# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Moraxella_catarrhalis_O35E-ASM19308v2/GCA_000193085.2_ASM19308v2_protein.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Moraxella_catarrhalis_O35E-ASM19308v2/GCA_000193085.2_ASM19308v2_protein.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Moraxella_catarrhalis_O35E-ASM19308v2/GCA_000193085.2_ASM19308v2_protein.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       EGE23445.1  [L=66]
Description: restriction endonuclease, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00026   20.4   0.0     0.0003   20.2   0.0    1.0  1  RE_NgoFVII  NgoFVII restriction endonuclease


Domain annotation for each model (and alignments):
>> RE_NgoFVII  NgoFVII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.7e-08    0.0003     248     288 ..      10      49 ..       7      53 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.7e-08
                 ...EEEEETTSEEEEEEEESGGG-EEEESS-THHHHHHHHH CS
  RE_NgoFVII 248 kdefevitDDGtsfkakvegdnpKqlssesdksiLGkylrn 288
                  ++f +it DG  + akv ++n+K+l +++ +s L  +l +
  EGE23445.1  10 DEPFDLITPDGQILNAKVCQENSKALMTNP-NSALADWLLR 49 
                 579***********************9976.5777777644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 497.20
//
Query:       EGE23446.1  [L=266]
Description: integral membrane protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-17   63.3  22.6    1.2e-15   57.8  22.6    2.0  1  Cation_efflux  Cation efflux family
      0.005   17.2   0.0      0.008   16.6   0.0    1.3  1  HMA            Heavy-metal-associated domain
  ------ inclusion threshold ------
      0.096   12.8   0.0        0.3   11.3   0.0    1.7  2  UPF0047        Uncharacterised protein family UPF0047
        9.4    6.5  11.7       0.11   12.7   2.9    2.2  2  TrbC           TrbC/VIRB2 family


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8  22.6   2.7e-19   1.2e-15       4     192 ..      93     263 ..      90     266 .] 0.92

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2.7e-19
  Cation_efflux   4 sllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqklikeger 99 
                    +l +n++++++e  vg+++nS+ l+ad++ +l+d +  +l+l a+ ++              ++  +a+  g++ ++la+f ++e i ++i + e+
     EGE23446.1  93 VLMINFVFFIIECSVGIFANSMGLIADSLDMLADSFVYILALSAIGMTLA------------YKKRVAFLAGITQIILALFGVIEVIRRFI-GTEQ 175
                    6889**************************************99987744............3445899**********************.**** PP

  Cation_efflux 100 eihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalkllk 192
                    + +  l+++ a+++l+ n ++l++l ++++  ++a +ka+++ + +D++ ++gv+ +  ++ll+ +    + D ++++++ +i+l  a+++lk
     EGE23446.1 176 LPNYQLMIGTAFLALIANWLCLYLLSKNQN--KEAHIKASMIFTSNDIIINIGVIAAGALTLLT-HS--SYPDLIIGMIVFVIVLFGARNILK 263
                    *************************99876..*******************************8.44..489999999999999999999988 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.8e-06     0.008       2      61 ..       6      62 ..       5      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.8e-06
         HMA  2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61
                +++  m+C + ++ ++  L+ ++++++  +d a + +tV +d  +    +i++ +e +++
  EGE23446.1  6 FNIAKMDCPSEEQLIRMRLKDVSDIYELQFDIAGRCLTVYHDNQD---TTILQVLEPLNF 62
                8999***********************************999999...778888887776 PP

>> UPF0047  Uncharacterised protein family UPF0047
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.78   3.5e+03      58      75 ..      45      69 ..      25      87 .. 0.65
   2 ?   11.3   0.0   6.7e-05       0.3      58      94 ..     198     232 ..     169     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.78
                -GGGTT.......S..THHHHHHHH CS
     UPF0047 58 Yrhnae.......gpdnadaHlkss 75
                Y+ n++       +p n d+H+ s+
  EGE23446.1 45 YHDNQDttilqvlEPLNFDSHIIST 69
                4444333333333555888888765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6.7e-05
                 -GGGTTS..THHHHHHHHHH-SEEEEEEETTEE---T CS
     UPF0047  58 YrhnaegpdnadaHlkssllgssltipvedgklalGt 94 
                 Y  +  +++n +aH+k+s++ +s  i+++ g +a G 
  EGE23446.1 198 YLLS--KNQNKEAHIKASMIFTSNDIIINIGVIAAGA 232
                 4444..567********************99999986 PP

>> TrbC  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.6      0.86   3.9e+03      56      73 ..     128     145 ..      92     166 .. 0.63
   2 ?   12.7   2.9   2.4e-05      0.11      56      97 ..     221     263 ..     209     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.86
        TrbC  56 viatiaiivaGimlafgr 73 
                 ++ ++a+ ++G +la ++
  EGE23446.1 128 FVYILALSAIGMTLAYKK 145
                 445555555555555544 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.4e-05
        TrbC  56 viatiaiivaGimlafgrls.wrtlvmvviGiviifgAssivs 97 
                 +i+ i++i+aG+  +  + s  + +++++++++++fgA +i +
  EGE23446.1 221 IIINIGVIAAGALTLLTHSSyPDLIIGMIVFVIVLFGARNILK 263
                 78899*************997777899*************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2063.11
//
Query:       EGE23447.1  [L=46]
Description: hypothetical protein EA1_08834 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00015   20.8   0.0    0.00015   20.8   0.0    1.0  1  PrpF      PrpF protein


Domain annotation for each model (and alignments):
>> PrpF  PrpF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   8.5e-09   0.00015      42      64 ..      21      43 ..       6      45 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 8.5e-09
                S-TT-TTSS--SSGGG-EEEEEE CS
        PrpF 42 pdplqiDGlGGgnsltskvviis 64
                p  +qiDGlG g+s tskvvi+s
  EGE23447.1 21 PYGKQIDGLGNGSSGTSKVVIVS 43
                4556*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 413.63
//
Query:       EGE23448.1  [L=153]
Description: hypothetical protein EA1_08839 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-08   35.4   3.1    1.9e-08   35.0   3.1    1.3  1  Hemerythrin  Hemerythrin HHE cation binding domain


Domain annotation for each model (and alignments):
>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   3.1   1.1e-12   1.9e-08      33     130 ..      30     129 ..       4     130 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.1e-12
                  C..HCCHHHHHHHHHHHHH....HHHHHHHHHCHHHHH.....CCC.HHHHHHHHHHHHHHHHHHHHHHHHCHTCGGSTCHHHHHHHHHHHHHHHHHH CS
  Hemerythrin  33 a..lrklaelldelvdele....aHhaaEEellfPlle....drpggravldvlereHdeirelleelrellkgleepsaaafaelleeladllreHi 120
                  +   +++ +++++lv++++    aH+a+EE++l   l      +p   a  ++l +eH+++r l  +l e + +++        ++l++la++l +Hi
   EGE23448.1  30 DstTDDIFRHWQALVAYVHddriAHFAIEERYLVAPLLanhgNHPKVMALGKQLLAEHEQLRTLS-QLTESASHPT-------IDDLHALAQALYDHI 119
                  144666777777777776633337*********66666488888888888888888888888554.4444444444.......77************* PP

                  HHHHHTHHHH CS
  Hemerythrin 121 akEesilfpl 130
                  + Ee+++fp 
   EGE23448.1 120 RFEEREVFPV 129
                  *********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1343.56
//
Query:       EGE23449.1  [L=417]
Description: ornithine-oxo-acid transaminase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.2e-118  396.3   0.0   1.4e-118  396.1   0.0    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.1   0.0  7.8e-123  1.4e-118       2     405 ..      21     409 ..      20     410 .. 0.96

  Alignments for each domain:
  == domain 1  score: 396.1 bits;  conditional E-value: 7.8e-123
                  C-TTB--SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHH CS
  Aminotran_3   2 vareednlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseA 99 
                   a+++++l++v++++eGv ++dv+gk+y+D++s++++vn+Gh+hPk+++ + eqa++l+++s +a++++++ +++    + ++   dk++ +n+G+eA
   EGE23449.1  21 GAHNYHPLPVVLSRGEGVHVWDVEGKQYYDFLSAYSAVNQGHCHPKIIATLTEQAKTLTLTS-RAFHSDKLGEFEAFACDYFGY--DKLLPMNTGAEA 115
                  688999999*****************************************************.*********************..************ PP

                  HHHHHHHHHHHHHHTS..HCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHH..CHTCCCE CS
  Aminotran_3 100 vetAlKlarkyarekk..atektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleeleale..kkkkdev 193
                  vetA+K++rk+a+ekk   ++++kii ++++fHGrt + +s +++ ++ +++fgp + ++++++y+                  l+ale   + +++v
   EGE23449.1 116 VETAIKICRKWAYEKKgiDENQAKIIVCENNFHGRTTTIISFSND-ENARKNFGPYTQGFIKVEYDN-----------------LQALEqaLTDNKDV 195
                  ****************999**************************.99******************6.................4444432456899* PP

                  EEEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTSB--T CS
  Aminotran_3 194 aAvivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgshgsT 290
                  a+++vEpiqge+Gv+v+s+++lak+++lc+kh+vl++ DE+qtG++rTGkl Al+h +v pD+++l+Ka++gG +p+s+v+a++++m++++pg+hgsT
   EGE23449.1 196 AGFLVEPIQGEAGVYVPSEGYLAKAKALCDKHNVLFLGDEIQTGIARTGKLLALDHENVRPDILILGKAVSGGvYPVSVVMADDDIMNVIRPGQHGST 293
                  ************************************************************************************************** PP

                  TTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.HHHHHHHHHCTEE-EEETTTEEEE--- CS
  Aminotran_3 291 fgGnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.keilkkakekGvlilsaGdnvirllpp 387
                  +gGnpl +ava  +le++ +++l++na++lg++++e++++l +k+e +  vRgkGl+ a+ + + ++  + ++++ ++ke+G+l ++++ n+ir++pp
   EGE23449.1 294 YGGNPLGAAVAKTALEVVRDDNLADNADKLGHIFREEMQKLVDKHELLTLVRGKGLLNAVVINDTEDSSTaWDLCLALKENGLLAKPTHGNIIRFAPP 391
                  ***********************************************************9776666644479************************** PP

                  TT--HHHHHHHHHHHHHH CS
  Aminotran_3 388 liitdeeidelleilkka 405
                  l++t+ +++e+++i+ k+
   EGE23449.1 392 LVMTETQLRECVDIIAKT 409
                  ***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3140.15
//
Query:       EGE23450.1  [L=310]
Description: arginase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-73  247.7   0.1    1.8e-73  247.5   0.1    1.0  1  Arginase  Arginase family


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.5   0.1     1e-77   1.8e-73       2     279 ..       6     298 ..       5     299 .. 0.92

  Alignments for each domain:
  == domain 1  score: 247.5 bits;  conditional E-value: 1e-77
                 EEEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSBTHCHEETTTTESCCSEEEEEEEEE--............SSCHHHH...HHHHHHHHHHHHHTTCE CS
    Arginase   2 dvallGvPfdaagsgrpGarfGPraireasarleealeynlelgvleelkivdlgdvavt............pvdneev...leqieeavaeilkagkl 85 
                 +val+G+P+d+ g+g +G++ GP+a+r a   +++a+e   + g    ++++d g+++ +             +d+  v   ++ +++av++ lk+g++
  EGE23450.1   6 TVALIGAPTDV-GAGVRGVNLGPDALRIA--DIDKAIE---QYG----FTVIDRGNLQGPanpnqppvngyrHFDE--VvawNKMAHDAVYDELKNGNF 92 
                 589********.*****************..4554333...346....9********9998888887776542333..2467***************** PP

                 EEEEESSGGGHHHHHHHHHHHH...STTEEEEEESSS----SSCTTTBSSSTTSHHHH.............HHHHTSECGCEEEEEEE-STCSHHHHHH CS
    Arginase  86 pivlGGDHsialgilralaeky...gkplgvihfDAHaDlrtpetegsgnshGtpfrr.............aaeegllkpkklvqiGirsvdneeyela 168
                 pi++GGDH + l++l a+a+++   gk+l+++++DAHaD++t+e ++sgn hG+p+++              + +g ++pk+++qiGirsvd++e+ ++
  EGE23450.1  93 PILMGGDHCLGLASLTAVARHCreqGKKLRILWLDAHADFNTSEMTPSGNIHGMPVACacgfgpdelttigGV-RGAISPKDVYQIGIRSVDAKEKYFI 190
                 *************************99******************************************9866.799********************** PP

                 HHTTSEEEEHHHHHHHHHHHHHHHHHHHHTCTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSSTTTHHH CS
    Arginase 169 kelgirvitmreidelglkavveeilervgaeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldteaeqta 267
                 +e g++v++mr ide+g+++++e++l+ + ++++++++SfD+D+lDp++aP++Gt++ gG t+re+  +++++a+++ ++++D++E+nP+ld++ ++ta
  EGE23450.1 191 NEKGVTVFDMRYIDENGMRHTMEQALKGL-DNDTHLHISFDVDFLDPSIAPAVGTTVMGGPTYREASLCMEMIADTGLMASLDIMELNPTLDER-NRTA 287
                 99***************************.5889***********************************************************5.5*** PP

                 HHHHHHHHHHHH CS
    Arginase 268 rlaarlvrelll 279
                  ++++++++l +
  EGE23450.1 288 VIMVDFIESL-F 298
                 ******9994.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2159.56
//
Query:       EGE23451.1  [L=41]
Description: hypothetical protein EA1_08854 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      142  (0.00792013); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 317.77
//
Query:       EGE23452.1  [L=35]
Description: hypothetical protein EA1_08859 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 286.23
//
Query:       EGE23453.1  [L=116]
Description: methylitaconate delta2-delta3-isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-25   90.0   0.2    1.7e-25   89.8   0.2    1.0  1  PrpF      PrpF protein
  ------ inclusion threshold ------
       0.39   10.3   1.6       0.83    9.3   1.6    1.5  1  PIR       Yeast PIR protein repeat


Domain annotation for each model (and alignments):
>> PrpF  PrpF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.2   1.9e-29   1.7e-25     111     209 ..      15     115 ..       4     116 .] 0.89

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.9e-29
                 GGG--.EEEEEEEETTT.TEEEEEEEEEETTEE----SB--TT-SS-B--EEEEEES------S-SSTTS-SSEEEEETT.EEEEEEEEESSSEEEEEE CS
        PrpF 111 aarep.vtavrilnvni.gklivaevpvedGqvqeeGdveldGvpgsaaevalefldaadsktgalfPtgnlvdtldvpg.gtvevtlidaaiPlvlve 206
                 a r+p ++ vr    n   k+i+a+v ++dGqvqe+Gd+e dGv+++++ev ++f+++ +s  g +fPtg+l+d l vp+  ++evtli+a++P++++ 
  EGE23453.1  15 ASRMPeMAFVRCEFGNKhCKTIIAHVLITDGQVQETGDFERDGVTFPTTEVWIDFINPVNSD-GDMFPTGKLIDILTVPNvDEFEVTLINAGMPTIFIC 112
                 45666688899988775279***************************************988.*****************9*****************9 PP

                 TTT CS
        PrpF 207 aes 209
                 a+ 
  EGE23453.1 113 ASD 115
                 986 PP

>> PIR  Yeast PIR protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.6   9.2e-05      0.83       7      13 ..      42      48 ..      42      48 .. 0.98

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 9.2e-05
         PIR  7 IgDGQiQ 13
                I+DGQ+Q
  EGE23453.1 42 ITDGQVQ 48
                9****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 875.50
//
Query:       EGE23454.1  [L=594]
Description: hypothetical protein EA1_08869 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-31  109.9  18.1    1.2e-31  109.7  17.0    1.7  2  DUF389           Domain of unknown function (DUF389)
     0.0076   16.0   0.0      0.019   14.7   0.0    1.7  1  DUF4239          Protein of unknown function (DUF4239)
  ------ inclusion threshold ------
       0.13   12.5   2.6       0.17   12.1   0.1    2.4  2  XRN1_D2_D3       Exoribonuclease Xrn1 D2/D3 domain
        5.8    6.3   8.0       0.31   10.4   0.5    2.3  2  GNAT_acetyltr_2  GNAT acetyltransferase 2


Domain annotation for each model (and alignments):
>> DUF389  Domain of unknown function (DUF389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7  17.0   2.6e-35   1.2e-31       1     141 [.     277     412 ..     277     413 .. 0.97
   2 ?   -3.2   0.0       1.7   7.7e+03      29      47 ..     449     467 ..     441     495 .. 0.53

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 2.6e-35
      DUF389   1 MlisPlmgpilaiafglvigdrkllrrglknlliglllallvgflfglllplkvlgeeelptsemlsrtepnlvdllvAlasGaagalallsgn.sssl 98 
                 Mli+ l+gpi +ia++++  +  ll+++l++ll g +l+ ++g+l+g+l+p +      + ++e+ +rt pn +d++vAla+G+aga+al+s+n s ++
  EGE23454.1 277 MLIAMLIGPISGIALAIIDARLALLKKSLLTLLSGGALIYAIGVLLGFLYPDQ------AASQEIIARTAPNTMDVFVALAGGVAGAYALISRNlSVAV 369
                 ***********************************************998875......666********************************9**** PP

      DUF389  99 vGvaIaaaLlPPavnaGlglalgewalalgslllllvNivgIv 141
                 vGva+a+aL+PP+ ++G++la+g+++lalg+l+l+l+Ni++I 
  EGE23454.1 370 VGVAVATALVPPLTASGILLATGHYQLALGALILTLTNILAIQ 412
                 ****************************************996 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.7
      DUF389  29 lknlliglllallvgflfg 47 
                 +++ ++ l+l + +++ ++
  EGE23454.1 449 IRRNMVTLILLIGLSVYLT 467
                 3444444444444444444 PP

>> DUF4239  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.2e-06     0.019      97     157 ..     194     263 ..     158     294 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.2e-06
     DUF4239  97 dllaevkgdasse.saaveell.........seiaqltelRakRisdeavalppthflvlaalsllslvgf 157
                 ++++e  +++ +e ++++e+ +         ++   + ++R+ Ri  e  alp  hf ++ +ls++++ gf
  EGE23454.1 194 NDIHEAVEKQLKEqQEQQEQQYeafkqylakKNSETAIDYRQIRIDIESGALPTRHFYLMNGLSAVIA-GF 263
                 44444444444441333333335555555677888899**************************9875.34 PP

>> XRN1_D2_D3  Exoribonuclease Xrn1 D2/D3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3      0.79   3.5e+03      34      64 ..     196     215 ..     172     226 .. 0.52
   2 ?   12.1   0.1   3.7e-05      0.17      36      74 ..     466     504 ..     461     508 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.79
                 EEEEEEBS-SS---SHHHHHHHHHHHHS-EE CS
  XRN1_D2_D3  34 lsvvlaklksekepefgkkrikeaeksnrYl 64 
                 ++  ++k           +  +++e++++ +
  EGE23454.1 196 IHEAVEK-----------QLKEQQEQQEQQY 215
                 3333333...........3333333333322 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.7e-05
                 EEEEBS-SS---SHHHHHHHHHHHHS-EE------EEHH CS
  XRN1_D2_D3  36 vvlaklksekepefgkkrikeaeksnrYlpsfavakklg 74 
                 ++l ++++ ++++++k +i+  +++++Y ps+ v+   g
  EGE23454.1 466 LTLDFQQRIRQKSYEKAVIEVVQQQIQYQPSYVVSSDFG 504
                 678888888999**********************98876 PP

>> GNAT_acetyltr_2  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   6.8e-05      0.31     106     181 ..      77     154 ..      68     159 .. 0.75
   2 ?   -0.6   0.9      0.16   7.4e+02     124     139 ..     200     215 ..     169     246 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.8e-05
  GNAT_acetyltr_2 106 elqkmGYGsralellekyyegklssleeeeekeeeeeeekeeeeeklsleeeklk..prkelpplllklseekpekld 181
                      +l ++G+  +++e ++k ++++ls++ +++ k++++++++  + ++++++++k++  ++k  p+ + ++s  + +k++
       EGE23454.1  77 NLIEQGFSEETIESVSKAVNKQLSKNANDDAKQDDNTDDNLPKGDDANQTHSKINpiTKKISPNDFAHTSRPNQSKVH 154
                      56789*******************999888888777776665555444444444411567778888888888888887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.16
  GNAT_acetyltr_2 124 yegklssleeeeekee 139
                      +e++l++++e++e++ 
       EGE23454.1 200 VEKQLKEQQEQQEQQY 215
                      1111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2940  (0.16398); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 4029.06
//
Query:       EGE23455.1  [L=202]
Description: methyltransferase small [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-29  100.8   0.0    6.7e-29  100.6   0.0    1.1  1  MTS              Methyltransferase small domain
    7.6e-15   55.0   0.0    1.1e-14   54.5   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    9.9e-08   31.7   0.0    1.2e-07   31.4   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    9.5e-07   29.4   0.0    1.5e-06   28.8   0.0    1.3  1  Methyltransf_25  Methyltransferase domain
     0.0023   17.3   0.0      0.003   16.9   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0038   16.7   0.0     0.0049   16.3   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
     0.0094   15.9   0.0      0.016   15.1   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
  ------ inclusion threshold ------
      0.016   15.1   0.4       0.02   14.8   0.4    1.2  1  FadR_C           FadR C-terminal domain
      0.041   14.6   0.0      0.066   14.0   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
       0.15   12.7   0.0       0.23   12.1   0.0    1.3  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   3.7e-32   6.7e-29       3     168 ..      31     196 ..      29     197 .. 0.92

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 3.7e-32
                 EEEEETTSTTTTS--HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST.TS-EE CS
         MTS   3 tlktlpgvFskdklDkGsklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeve.ekkfd 99 
                 ++++  g+Fs +klD Gs +Ll++++ +++++ +DlGcG+Gvlg+++a+e+p+ +  l+d+d+ A+e ak n+++n+l  +ev+ s+++ +v+  ++f 
  EGE23455.1  31 NFTSTWGIFSPEKLDDGSLMLLDYIDFQTQDNSIDLGCGYGVLGMTAARECPKGHHLLIDKDFVAIEYAKLNCKNNGLGnAEVMLSNGFYHVDkSRQFS 129
                 689999************************************************************************99********999985789** PP

                 EEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSC..HHHHHHHHHS--EEEEEESSEEEE CS
         MTS 100 livsNPPfhagkatelavaeeliaeAkeaLkegGeLliVanrklg..yeslleelfgnvevvaktkkfkvl 168
                 l++sN P +a+k++++      + +A +a+++gG++++V+ + l+  +++  +e+fgn + +++ k ++v 
  EGE23455.1 130 LVMSNLPAKASKEQHY----LYLLDAYNAMTSGGRFYVVTINGLRdfMKRSFTEVFGNADKIKQGKTYTVT 196
                 ***********99444....34679***************99997445666*****************996 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   6.1e-18   1.1e-14       6     120 ..      62     175 ..      57     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 6.1e-18
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpd.kileei 97 
                      + +DlGCG G l+  +a + +pk+++ +iD +  aie+A+ n++++gl n+e+  ++ +   +k+   ++f l++sn +  a +++   +l  +
       EGE23455.1  62 NSIDLGCGYGVLGMTAA-RECPKGHHLLIDKDFVAIEYAKLNCKNNGLGNAEVMLSNGFYhVDKS---RQFSLVMSNLPAKASKEQHyLYLLDA 151
                      679**************.88*************************************99999976...9********9996655554166779* PP

  Methyltransf_31  98 ervlkpggilliedprllaelp.a 120
                       +++++gg++ + ++++l+++  +
       EGE23455.1 152 YNAMTSGGRFYVVTINGLRDFMkR 175
                      ****************88887642 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   6.7e-11   1.2e-07     151     237 ..      48     138 ..      45     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 6.7e-11
        PrmA 151 clealekl.vkegeevlDvGtGSGiLaiaaak.LgakkvvavDiDevAvkvakeNaelNkveaklevalseellk...eekadvivaNILae 237
                 +l +l+ +  +++++ +D+G+G G+L + aa+     + + +D D vA++ ak N + N++ +   v+ls+   +   ++++ ++++N  a+
  EGE23455.1  48 SLMLLDYIdFQTQDNSIDLGCGYGVLGMTAAReCPKGHHLLIDKDFVAIEYAKLNCKNNGLGNAE-VMLSNGFYHvdkSRQFSLVMSNLPAK 138
                 67777777457788*************97776155668899*******************99855.5666666533348999****998776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   8.5e-10   1.5e-06       3      97 .]      65     159 ..      64     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 8.5e-10
                      EET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   3 dlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      dlGcG G l + +a++++k++ + +D +  ++e+a+ +++++gl n+e++  +      ++++f lv+s+      s+e++  +l  ++++++ 
       EGE23455.1  65 DLGCGYGVLGMTAARECPKGHHLLIDKDFVAIEYAKLNCKNNGLgNAEVMLSNGFYHVDKSRQFSLVMSNLPAK-ASKEQHYLYLLDAYNAMTS 157
                      9****************99*******************************999977777899*******53344.4556666677777777777 PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      gG
       EGE23455.1 158 GG 159
                      76 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.7e-06     0.003      53     171 ..      50     170 ..      43     187 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.7e-06
                 HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHH..HHHHHHHHHTS-SSS-EEEEES-GGG---..--SEEEEES-GGGTSGGGHHH CS
        CMAS  53 lileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeq..aklakkrvdeldlerkvevklldyedlde..kvdrvvsvgafehvgkenydt 147
                 ++l+ ++ +  ++ +d+GcG+G l ++a+++   k   l + k+    ++ak ++++ +l + + ++  ++  +d+  ++  v s ++  +  ke++  
  EGE23455.1  50 MLLDYIDFQTQDNSIDLGCGYGVLGMTAARE-CPKGHHLLIDKDFvaIEYAKLNCKNNGLGNAEVMLSNGFYHVDKsrQFSLVMS-NLPAKASKEQHYL 146
                 56788899999999*****************.67788888888861157899999*****9999999999****99867777666.6777888899999 PP

                 HHHHHHHHS-TT-EEEEEEEEE-- CS
        CMAS 148 ffkklkkllkedGllllhtitslh 171
                 +   +++++ ++G++ + ti  l+
  EGE23455.1 147 YLLDAYNAMTSGGRFYVVTINGLR 170
                 *****************9998765 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.7e-06    0.0049       5      65 ..      63     123 ..      59     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.7e-06
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHH CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvll 65 
                      +++GcG+G + ++ A + P+   l i++ +  ++++  + ++++l N +++ ++ ++++ 
      EGE23455.1  63 SIDLGCGYGVLGMTAARECPKGHHLLIDKDFVAIEYAKLNCKNNGLGNAEVMLSNGFYHVD 123
                     68*****************************************************977664 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     9e-06     0.016      14      82 ..      59     126 ..      51     134 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9e-06
  Methyltransf_18  14 kgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeee 82 
                      ++++ +D G+  g+l + +++e    + + +D    ++e ak n++++gl  + ev+ls+G+  ++++ 
       EGE23455.1  59 TQDNSIDLGCGYGVLGMTAARECPKGHHLLIDKDFVAIEYAKLNCKNNGLG-NAEVMLSNGFYHVDKSR 126
                      466889********************************************5.69********9998654 PP

>> FadR_C  FadR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.4   1.1e-05      0.02      59     121 ..     131     193 ..      86     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
      FadR_C  59 evkeledkaeafaefDYklfrelafasgnkiYvLilNglkklYsrvgslyFsneearelalkf 121
                  +++l  ka++ +++ Y l    a++sg ++Yv ++Ngl+++ +r  +  F n ++ ++ +++
  EGE23455.1 131 VMSNLPAKASKEQHYLYLLDAYNAMTSGGRFYVVTINGLRDFMKRSFTEVFGNADKIKQGKTY 193
                 455566668888899999999************************999999888777766666 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.7e-05     0.066       2      55 ..      65     117 ..      64     161 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-05
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelea 55 
                      ++GcG G l +  +++ p  + + +D +  aie ak   + + ++ n++v l +
       EGE23455.1  65 DLGCGYGVLGMTAARECPKGHHLLIDKDFVAIEYAKLNCKNN-GLGNAEVMLSN 117
                      9*******************************6665555554.45555555555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.23       2      95 ..      65     162 ..      64     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                      EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-.CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhv.edpekalkeiaRvLkpg 91 
                      d+GcG G l    a+ +  ++ + +D +  ++++ak + +++gl + e++ ++      ++ +f lv+s+       e++  +l  ++  +  g
       EGE23455.1  65 DLGCGYGVLGMTAARECpkGHHLLIDKDFVAIEYAKLNCKNNGLgNAEVMLSNGFYHVDKSRQFSLVMSNLPAKASkEQHYLYLLDAYNAMTSG 158
                      9*************9999*************************998788888777544566799999999988888777888888888888888 PP

                      EEEE CS
  Methyltransf_11  92 Gllv 95 
                      G+++
       EGE23455.1 159 GRFY 162
                      8887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1446.25
//
Query:       EGE23456.1  [L=140]
Description: hypothetical protein EA1_08879 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.086   13.1   0.0       0.13   12.5   0.0    1.4  1  DUF4157   Domain of unknown function (DUF4157)
       0.11   12.3   0.1       0.14   11.9   0.1    1.2  1  BSP       Peptidase of plants and bacteria


Domain annotation for each model (and alignments):
>> DUF4157  Domain of unknown function (DUF4157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05      0.13      45      77 ..      33      69 ..      12      71 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
     DUF4157 45 ndivfaage....yqpesaagrellaHELtHvvqqre 77
                 +++f ++     ++ +    r+ l HEL+Hv q ++
  EGE23456.1 33 GHVYFHPKDfcedFSSQHLMKRAWLIHELVHVWQVQQ 69
                5666655441111455556678999*******99876 PP

>> BSP  Peptidase of plants and bacteria
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.6e-05      0.14     102     122 ..      57      77 ..      44     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.6e-05
         BSP 102 Lthelvhvyqweaegrapggl 122
                 L+helvhv+q ++  r +++ 
  EGE23456.1  57 LIHELVHVWQVQQDIRVFWRA 77 
                 99*********9976666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1020.29
//
Query:       EGE23457.1  [L=412]
Description: recombination factor protein RarA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-64  216.6   0.1    2.6e-64  216.2   0.1    1.2  1  MgsA_C           MgsA AAA+ ATPase C terminal
    1.5e-20   73.3   0.0    3.1e-20   72.3   0.0    1.5  1  AAA_assoc_2      AAA C-terminal domain
    1.3e-11   45.0   0.0    5.3e-11   43.1   0.0    1.9  2  AAA              ATPase family associated with various cellul
    1.9e-11   44.0   0.0    3.5e-11   43.1   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    5.5e-07   30.1   0.9    0.00091   19.6   0.0    3.1  3  AAA_16           AAA ATPase domain
    1.5e-06   28.2   0.1    0.00014   21.8   0.1    2.6  1  AAA_5            AAA domain (dynein-related subfamily)
    1.1e-05   25.2   0.0      0.002   17.8   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
    0.00023   20.6   0.1       0.11   11.9   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0003   20.7   0.1      0.013   15.4   0.1    2.6  1  AAA_3            ATPase family associated with various cellul
    0.00043   20.3   0.0     0.0013   18.8   0.0    1.8  1  AAA_14           AAA domain
     0.0027   17.8   0.0       0.01   16.0   0.0    1.9  2  Sigma54_activ_2  Sigma-54 interaction domain
     0.0032   17.7   0.7       0.88    9.8   0.1    3.1  3  AAA_22           AAA domain
     0.0042   17.0   0.0      0.014   15.3   0.0    1.8  2  NACHT            NACHT domain
  ------ inclusion threshold ------
      0.013   15.2   0.4        3.4    7.3   0.0    2.7  2  AAA_30           AAA domain
      0.021   15.2   0.0      0.059   13.8   0.0    1.8  1  RNA_helicase     RNA helicase
      0.028   14.2   0.0        1.5    8.6   0.0    2.3  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
      0.029   13.6   0.0      0.068   12.4   0.0    1.5  2  TIP49            TIP49 P-loop domain
      0.041   14.2   0.5        2.5    8.5   0.0    2.4  2  AAA_19           AAA domain
       0.06   12.5   0.0       0.55    9.4   0.0    2.0  2  NB-ARC           NB-ARC domain
      0.073   13.6   0.0       0.15   12.6   0.0    1.5  1  AAA_18           AAA domain
      0.075   12.6   0.4       0.28   10.7   0.2    2.0  2  AAA_25           AAA domain
        0.1   12.6   0.0          2    8.4   0.0    2.2  2  ResIII           Type III restriction enzyme, res subunit
       0.11   12.3   0.1       0.25   11.1   0.0    1.6  1  AAA_26           AAA domain
       0.14   12.3   0.1       0.35   11.0   0.1    1.8  1  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> MgsA_C  MgsA AAA+ ATPase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.2   0.1   3.5e-67   2.6e-64       1     159 [.     246     403 ..     246     411 .. 0.96

  Alignments for each domain:
  == domain 1  score: 216.2 bits;  conditional E-value: 3.5e-67
                 TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHCS----GG.GHHHHHHHHH------ CS
      MgsA_C   1 GSdpdAAlyylarmleaGedprfiaRRlviiAseDiGlAdpqalqlavaaaeaveriGlpEariaLaqavvylalapKSnaaykAikkaledvkekksl 99 
                 GSd+dAA+y++ar+l+aGedp f+aRRlvi+AseDiGlA+p+al la a +++v+ iG+pEari+L q+++yla +pKSn++y+Ai++al+ ++ ++++
  EGE23457.1 246 GSDADAAIYWMARILAAGEDPAFVARRLVILASEDIGLANPNALLLADAGLRSVQSIGMPEARIILGQVIIYLANSPKSNSSYNAINHALKLAE-TDQS 343
                 9******************************************************************************************995.5679 PP

                 ---GGGST...........T-T---GGG--SS------S-CCG--..--------HHHHH CS
      MgsA_C 100 evPlhLrnaptklakklgygkgYkyphdypegvvkqqylpdelkkkkfYepterglekki 159
                 +vPlhLrn  tkl+++ gyg gY yphdyp+++  qqylpd+l  ++fYe  ++++e++ 
  EGE23457.1 344 PVPLHLRNGVTKLMQAEGYGMGYIYPHDYPNHYHPQQYLPDALIGTRFYEFADNQKEQAN 403
                 *******************************************999*******9999875 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   4.1e-23   3.1e-20      10      81 .]     178     245 ..     171     245 .. 0.93

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 4.1e-23
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHH CS
  AAA_assoc_2  10 dalealaeladGDaRkaLnlLElaaeaaeakegkieitledleealqrkalryDkagdehYdliSAlhKSiR 81 
                  + l+al++l++GD R+aLnlLEl+a+a e    +i i+++ + +++ +  +ryDk+gd hYdliSA++KS+R
   EGE23457.1 178 NNLAALIDLSQGDGRRALNLLELVAAAPE----PIIIDNASVVAVAGQPLVRYDKSGDGHYDLISAMIKSVR 245
                  56899*******************99986....7*************************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   7.1e-14   5.3e-11       1     126 [.      41     145 ..      41     149 .. 0.89
   2 ?   -1.1   0.0       3.1   2.3e+03      58      91 ..     204     242 ..     154     290 .. 0.49

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 7.1e-14
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka..kpsilfiDEidalaksrsgseseeeervvnqLlteldgvk 97 
                 ++l+G  G+GKT+la  +a  +g++f  +s+ +          k++re++++       +p ++f+DEi++++k++           +++Ll++++  +
  EGE23457.1  41 LILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSG-------VKELREVLRS-DDGLfhEPPVVFVDEIHRFNKAQ-----------QDALLQAVETGE 120
                 589***************************98888.......8899999976.33346889***************...........********9887 PP

                 TSSSTEEEEEEESS..GGGSTHHHHSTTSSE CS
         AAA  98 kkeskvivigatnr..pdkldpallrgRfdr 126
                       ++igat++    ++++all +R+++
  EGE23457.1 121 I-----TLIGATTEnpSFSVNNALL-SRCQV 145
                 7.....89***99987889999999.9*986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.1
                 TSEEEEEETGGGHHHHH.....TTCCCHHHHHHHHHHHH CS
         AAA  58 kpsilfiDEidalaksr.....sgseseeeervvnqLlt 91 
                 +p  ++iD++  +a +       +++ + + ++++++++
  EGE23457.1 204 APEPIIIDNASVVAVAGqplvrYDKSGDGHYDLISAMIK 242
                 244455555554444444444444444444444444444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   4.7e-14   3.5e-11       1     116 [.       8     124 ..       8     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 4.7e-14
      RuvB_N   1 lrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaalltn....leekdvlfideihr 95 
                 +rP++l+  igq+++ ++ + + +    r+  l  ++l+G+ G+Gkttla+++a+ +g  ++  s+   +  ++l  +l +    ++e  v+f+deihr
  EGE23457.1   8 MRPTTLDAVIGQTHLLSEGAPIFN--IVRQGFLPSLILHGSAGIGKTTLAMLLADAVGRPFRPLSAV-SSGVKELREVLRSddglFHEPPVVFVDEIHR 103
                 69**********998877665554..4688999****************************988864.3455666666654333368899********* PP

      RuvB_N  96 lsraveevlysamedfrldiv 116
                 +++a ++ l +a+e  ++ ++
  EGE23457.1 104 FNKAQQDALLQAVETGEITLI 124
                 **************9988765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.2e-06   0.00091      16      50 ..      30      64 ..      16      78 .. 0.85
   2 ?    6.9   0.1      0.01       7.5     134     160 ..      91     117 ..      67     124 .. 0.73
   3 ?    0.1   0.0       1.2   9.3e+02     116     137 ..     319     345 ..     234     349 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.2e-06
      AAA_16 16 lervrsgrpelvllsGesGvGKsslvrellralek 50
                ++ vr+g  ++++l+G +G+GK++l+  l++a+ +
  EGE23457.1 30 FNIVRQGFLPSLILHGSAGIGKTTLAMLLADAVGR 64
                666888888******************99987766 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.01
      AAA_16 134 erplvlvlDdlqwadeaslqllaaLlr 160
                 ++p v+++D+++++  a++++l + ++
  EGE23457.1  91 HEPPVVFVDEIHRFNKAQQDALLQAVE 117
                 3489*****************655554 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.2
      AAA_16 116 a.....srllellkrllallsrderpl 137
                 a     ++ +++++++l+l+++d++p+
  EGE23457.1 319 AnspksNSSYNAINHALKLAETDQSPV 345
                 144555899999999999999999986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.9e-07   0.00014       2      99 ..      41     126 ..      40     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.9e-07
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeg 99 
                 ++L G  G+gK++la+ la a++r++      +    + +k  re+      ++d  l     e+ ++++DE++r +++ +++Ll+  e+ ++ l   
  EGE23457.1  41 LILHGSAGIGKTTLAMLLADAVGRPFRPLSAVS----SGVKELREV-----LRSDDGLF---HEPPVVFVDEIHRFNKAQQDALLQAVETGEITLIGA 126
                 89************************9987766....455555554.....33455555...6999***********************999987655 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.025        18      25      59 ..      41      75 ..      27      90 .. 0.83
   2 !   17.8   0.0   2.7e-06     0.002      96     131 ..      95     130 ..      83     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.025
                     EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETT CS
  Sigma54_activat 25 vlitGesGtGKellaraiheaskrkekpfvavnca 59
                     ++++G  G GK++la ++ +a  r  +p+ av  +
       EGE23457.1 41 LILHGSAGIGKTTLAMLLADAVGRPFRPLSAVSSG 75
                     6789*************999998888888777665 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.7e-06
                      EEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEE CS
  Sigma54_activat  96 tlfLDeigelplelQekLlrvlqegevervGsskei 131
                      ++f+Dei++++ + Q  Ll+++++ge++ +G+++e 
       EGE23457.1  95 VVFVDEIHRFNKAQQDALLQAVETGEITLIGATTEN 130
                      79*****************************98765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0     0.007       5.3      24      43 ..      40      59 ..      14      68 .. 0.88
   2 !   11.9   0.0   0.00014      0.11     109     143 ..      95     129 ..      87     145 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.007
  Mg_chelatase 24 nlllvGppGsGKtmlakrlp 43
                  +l+l G++G GKt la  l+
    EGE23457.1 40 SLILHGSAGIGKTTLAMLLA 59
                  699************98775 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00014
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevtisrakak 143
                   v+f+DE+  f++   ++L + +e+ge+t+  a+++
    EGE23457.1  95 VVFVDEIHRFNKAQQDALLQAVETGEITLIGATTE 129
                   89*************************98766543 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.7e-05     0.013       3     100 ..      42     130 ..      40     138 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
       AAA_3   3 llegvPGlaktllvkalakaldlefkriqftpdllPsdilG.tevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethkl 100
                 +l+g  G++kt+l+  la+a++  f+ +   +    s +    ev+++++    f++ p    ++++dei r +   q all+a+e  ++t+ g+t++ 
  EGE23457.1  42 ILHGSAGIGKTTLAMLLADAVGRPFRPLSAVS----SGVKElREVLRSDDGL--FHEPP----VVFVDEIHRFNKAQQDALLQAVETGEITLIGATTEN 130
                 67888888888888888888888888765544....2332202344333333..33444....689**************************9998765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.7e-06    0.0013       5     130 ..      41     156 ..      39     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.7e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpewe.kalkslvdegknldvivtGSns 102
                 l++ G   +GKTtl+  l++      + +  ++  +   k+l++  + ++ ++     ++  ++f DEi++ ++++ +al + v++g   ++ + G   
  EGE23457.1  41 LILHGSAGIGKTTLAMLLADAVG---RPFRPLSAVSSGVKELREVLRSDDGLF-----HEPPVVFVDEIHRFNKAQqDALLQAVETG---EITLIGATT 128
                 78999999******999987766...444444444444443332211123333.....35689*********997526899999988...89999**** PP

      AAA_14 103 kllskeiatslagrvaeielyplsfaEf 130
                  + s  +++ l  r ++++l pls  E+
  EGE23457.1 129 ENPSFSVNNALLSRCQVYKLEPLSDDEI 156
                 *9999*******************9987 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-05      0.01      24      97 ..      41     120 ..      19     143 .. 0.83
   2 ?   -1.9   0.0       4.5   3.4e+03       8      34 ..     329     355 ..     324     360 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.3e-05
                      EEEEEETT--HHHHHHCC--TTS-EE--S.STTHHHH-HHHHHHH.....TTTSEEEEEE-TT--HHHHHHHHHHHHHHT CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwleif.vverlaklpldlleq.....akggtLylkdiadlskaeqkeLlellakae 97 
                      + l G +G gk++ A lL++  g+   +   v +++k+  ++l +      ++ + ++ +i+ ++ka+q  Ll++++ +e
       EGE23457.1  41 LILHGSAGIGKTTLAMLLADAVGRPFRPLsAVSSGVKELREVLRSddglfHEPPVVFVDEIHRFNKAQQDALLQAVETGE 120
                      5678****************9988777651566777999999999777666999*******************9998873 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.5
                      HHHHHHHHHHHT-SS-EEEEEETT--H CS
  Sigma54_activ_2   8 qelkerLeqaaqsklpvfltGekGsgk 34 
                      +++++ L+ a+  ++pv l   +G  k
       EGE23457.1 329 NAINHALKLAETDQSPVPLHLRNGVTK 355
                      578888999987777776666666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1    0.0012      0.88       7      27 ..      40      60 ..      39      66 .. 0.87
   2 ?    4.4   0.0     0.055        41      83     109 ..      80     112 ..      67     130 .. 0.69
   3 ?   -1.8   0.0       4.5   3.4e+03      42      70 ..     313     341 ..     296     360 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
      AAA_22  7 ilvvtGesGtGKTtllrrlle 27
                +l+++G +G+GKTtl+  l++
  EGE23457.1 40 SLILHGSAGIGKTTLAMLLAD 60
                689************988876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.055
      AAA_22  83 eqalrarav....ielliiDEaqhlr..seeal 109
                 ++ lr+ +     ++++ +DE+++++  +++al
  EGE23457.1  80 REVLRSDDGlfhePPVVFVDEIHRFNkaQQDAL 112
                 555555555777789**********64422222 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 4.5
      AAA_22  42 vvfvtlpsstsskdllrellralglelka 70 
                 +v ++l++s +s + ++++ +al+l   +
  EGE23457.1 313 QVIIYLANSPKSNSSYNAINHALKLAETD 341
                 45788888888888899999998876555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.9e-05     0.014       3      25 ..      41      63 ..      40      73 .. 0.88
   2 ?   -1.6   0.0       3.1   2.3e+03     137     162 ..     138     163 ..      99     167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-05
                EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawa 25
                +il+G aG+GKTtL+  la+a  
  EGE23457.1 41 LILHGSAGIGKTTLAMLLADAVG 63
                699*************9999876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.1
                 TTSSCE..EEEE--TCCHHHHHHHHC CS
       NACHT 137 eqleeaivlevegfsesrrkqlvrky 162
                  +l++ +v+++e++s +++ +l+ + 
  EGE23457.1 138 ALLSRCQVYKLEPLSDDEIYALIVRA 163
                 34455599999999999998887665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3     0.022        17      22      41 ..      42      61 ..      38      81 .. 0.85
   2 ?    7.3   0.0    0.0045       3.4     144     175 ..      91     122 ..      63     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.022
      AAA_30 22 vltGpAGtGKttalkalrea 41
                +l+G AG GKtt+   l++a
  EGE23457.1 42 ILHGSAGIGKTTLAMLLADA 61
                899*********98877766 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0045
      AAA_30 144 agigtaeLtevvRqkeseeraaalalregdae 175
                 ++++++ ++e++R++++++ a+ +a+++g+++
  EGE23457.1  91 HEPPVVFVDEIHRFNKAQQDALLQAVETGEIT 122
                 57788899999999999999999999999887 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.9e-05     0.059       2      64 ..      42     107 ..      41     137 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.9e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl..klkkkdsvys.rnpeddfw...dg.YtgqevvvidDfgqvkde 64 
                   +l+G++g+GK+tla  La+a+ + +       + v s  +   +++   dg +++++vv +d++ + ++ 
    EGE23457.1  42 ILHGSAGIGKTTLAMLLADAVGRPFrpL----SAVSSgVKELREVLrsdDGlFHEPPVVFVDEIHRFNKA 107
                   79******************99887321....33333222223333222332346666666666666655 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.089        67      21      43 ..      40      62 ..      31      64 .. 0.86
   2 ?    8.6   0.0     0.002       1.5     106     163 .]      95     152 ..      75     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.089
  DNA_pol3_delta2 21 ayLfeGdegigkkelalnlakal 43
                     +++++G++gigk +la+ la a+
       EGE23457.1 40 SLILHGSAGIGKTTLAMLLADAV 62
                     7899**************99875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.002
  DNA_pol3_delta2 106 iiiiedaekmtksAaNalLktlEEPsenaifiLitsdtn.klLktirSRcqelkfspls 163
                      ++ ++++ + +k+ + alL+ +E   e +++  +t++++ ++ + + SRcq++k++pls
       EGE23457.1  95 VVFVDEIHRFNKAQQDALLQAVETG-EITLIGATTENPSfSVNNALLSRCQVYKLEPLS 152
                      788999****************987.344444455555435699************985 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.1e-05     0.068      23      85 ..      13      71 ..       4      84 .. 0.85
   2 ?   -2.7   0.0       3.4   2.6e+03     282     291 ..      96     105 ..      93     157 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.1e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 23 eeglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsg 85
                 ++++Gq++     + i ++++++ l   +++l G +g Gkt la+ ++ ++g+  pf  ls+
  EGE23457.1 13 LDAVIGQTHLLSEGAPIFNIVRQGFLP--SLILHGSAGIGKTTLAMLLADAVGR--PFRPLSA 71
                478999999999999999*******99..9**********************94..6666665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.4
                 XXXXXXXXXX CS
       TIP49 282 lfiDevhmlD 291
                 +f+De+h ++
  EGE23457.1  96 VFVDEIHRFN 105
                 5555555433 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2      0.11        84      13      27 ..      41      55 ..      32      65 .. 0.84
   2 ?    8.5   0.0    0.0033       2.5      98     137 ..      88     126 ..      66     133 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.11
      AAA_19 13 llvtaGpGtGKTrvl 27
                l++ + +G GKT++ 
  EGE23457.1 41 LILHGSAGIGKTTLA 55
                7899********975 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0033
      AAA_19  98 kklqeee.llivDEfqdvd.elqyrLlkallgekkklllvGD 137
                   + +e  +++vDE+   +  +q +Ll+a+  +++ ++l+G 
  EGE23457.1  88 GLF-HEPpVVFVDEIHRFNkAQQDALLQAVE-TGE-ITLIGA 126
                 334.55559**********99999*****99.777.999995 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00073      0.55      23      38 ..      41      56 ..      34      66 .. 0.88
   2 ?    0.5   0.0      0.37   2.8e+02     142     183 ..     134     177 ..     114     191 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00073
                EEEEESTTSSHHHHHH CS
      NB-ARC 23 valvGmgGvGKttlak 38
                + l+G +G+GKttla 
  EGE23457.1 41 LILHGSAGIGKTTLAM 56
                679***********85 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.37
                 CCCCCS-S-EEEEEESS--HHHHHHHHHHCCTS-GGCHH....C CS
      NB-ARC 142 evanavsatsekievelLekdeawellenkvfekkleekes..l 183
                 +v na   ++++ ++e L++de + l+     + +l + ++  +
  EGE23457.1 134 SVNNALLSRCQVYKLEPLSDDEIYALIVRAIRQDTLLKTKDiqI 177
                 6778888889****************999888888876665434 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0    0.0002      0.15       2      65 ..      42     117 ..      41     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0002
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...........gvnlrdvakenglllevdpe.aldeskrldedkldklldale 65 
                 +l G +G GKttla  L++  g            + +lr+v++ ++ l+ + p   +de +r+++ ++d+ll+a+e
  EGE23457.1  42 ILHGSAGIGKTTLAMLLADAVGRpfrplsavssgVKELREVLRSDDGLFHEPPVvFVDEIHRFNKAQQDALLQAVE 117
                 678999***********9997768899988888888888888888888888887999*************999887 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00037      0.28      35      57 ..      40      62 ..      20      83 .. 0.82
   2 ?   -2.8   0.0       5.4     4e+03     120     146 ..     243     269 ..     229     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00037
      AAA_25 35 lallaGapgtGKttlaldlalav 57
                  +l G  g GKttla+ la av
  EGE23457.1 40 SLILHGSAGIGKTTLAMLLADAV 62
                679***************99887 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.4
      AAA_25 120 drggtlltadvdaleaaieevegvrlv 146
                   +g+ ++a++ ++++ + + e++++v
  EGE23457.1 243 SVRGSDADAAIYWMARILAAGEDPAFV 269
                 445666788888888888887778776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.29   2.2e+02      27      47 ..      41      61 ..      30      66 .. 0.85
   2 ?    8.4   0.0    0.0027         2     134     157 ..      91     116 ..      70     130 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.29
                EEEEESTTSTHHHHHHHHHHH CS
      ResIII 27 glikmaTGtGKTlvaaklier 47
                ++++   G GKT +a+ l+++
  EGE23457.1 41 LILHGSAGIGKTTLAMLLADA 61
                5678889********998765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0027
                 S...EEEEETGGGTTS.TTTHHHHHT- CS
      ResIII 134 d...viiiDEaHrlgakkswreilekf 157
                     v+++DE Hr+++ ++  ++l+++
  EGE23457.1  91 HeppVVFVDEIHRFNK-AQQDALLQAV 116
                 2445***********9.5555555554 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00033      0.25       9     153 ..      46     188 ..      41     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00033
      AAA_26   9 dtgvGKTvvslgLvralkrkgvkvgyfKPiqtgieededselikellgldqtyelpeplalsaplspelaarqeg..edidlekiv.......kelekd 98 
                 ++g+GKT+++++L++a        + f+P+++ +   + ++ ++e+l+ d+   + +p+++ +++ ++ +a+q+   ++++  +i        +     
  EGE23457.1  46 SAGIGKTTLAMLLADAV------GRPFRPLSAVS---SGVKELREVLRSDDGLFHEPPVVFVDEIHRFNKAQQDAllQAVETGEITligatteNPSFSV 135
                 579**************......66677777777...588999*********************99999998887444444445547777643333346 PP

      AAA_26  99 adivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealr 153
                 ++ ++     + ++p++++++ a i+++++ +++l  ++++  in+l++ i++ +
  EGE23457.1 136 NNALLSRCQVYKLEPLSDDEIYALIVRAIRQDTLL--KTKDIQINNLAALIDLSQ 188
                 67777777777788888888888888888888776..555666777777776666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00047      0.35       3      24 ..      42      63 ..      41     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00047
      AAA_33  3 llvGlpGsGKstlaerllkklg 24
                +l+G +G GK+tla  l+ + g
  EGE23457.1 42 ILHGSAGIGKTTLAMLLADAVG 63
                89************99987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 2982.34
//
Query:       EGE23458.1  [L=364]
Description: 3,4-dihydroxy-2-butanone 4-phosphate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-82  275.8   0.6      2e-82  275.4   0.6    1.2  1  DHBP_synthase    3,4-dihydroxy-2-butanone 4-phosphate synthas
    4.7e-29  101.1   0.0    9.5e-29  100.1   0.0    1.5  1  GTP_cyclohydro2  GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.4   0.6   2.2e-86     2e-82       2     192 .]       8     198 ..       7     198 .. 0.99

  Alignments for each domain:
  == domain 1  score: 275.4 bits;  conditional E-value: 2.2e-86
                    HHHHHHHTT--EEEESSTTTT-BEEEEEEGGG--HHHHHHHHHHB-S--EEEEEHHHHHHTT--BSSSS-SSTT---BB--EEESST-SSS-SHHH CS
  DHBP_synthase   2 eaiealkaGkfvivvDdedrenegdLiiaAekvtpekvafmirhasGlicvalteeradeLeLplmveenedkhktaftvsvdaaegttTGIsaaD 97 
                    e+ie++kaGk+vi++DdedrenegdLi+aA+++tpe+++fmi+ha+Gl+c++lte+r+++L+Lplm+++n  k +t+ft+s++aaeg+tTGIsa+D
     EGE23458.1   8 EIIEDIKAGKMVILMDDEDRENEGDLIMAANHITPEAINFMITHARGLVCLTLTEARCQQLDLPLMSDKNGAKFSTNFTLSIEAAEGVTTGISASD 103
                    79********************************************************************************************** PP

                    HHHHHHHHH-TT--GGGEEEEEEEEEEEE-TTGGGTS-SHHHHHHHHHHHTTS-SBEEEEEBB-TTSCB-BHHHHHHHHHHHT-EEEEHHHHHHH CS
  DHBP_synthase  98 RalTirkladpkakpedfrrPGhvfplrareggvleRrghTEaavdLarlaglkpaavicellnddgtmarrdeleefakkhglkiitiedliey 192
                    Ra+T++++++++akp+d+++PGh+fp++a++ggvl+R+ghTEa++dLarlagl+pa+vi+e+++ dg+marrd+le fak+hglki ti+dli+y
     EGE23458.1 104 RARTVQAAIAANAKPTDIVQPGHIFPIMAKKGGVLHRAGHTEAGCDLARLAGLEPASVIVEIIKPDGEMARRDDLEVFAKEHGLKIGTIADLIQY 198
                    *********************************************************************************************98 PP

>> GTP_cyclohydro2  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0   1.1e-32   9.5e-29       5     162 ..     211     362 ..     204     363 .. 0.92

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1.1e-32
                      EEEEEETTEEEEEEEE--.....EEEEEE-.........EEEEEE--HHHHHS-B--TTTTTHHHHHHHHHHHH-.EEEEEE--TTTTTHHHHH CS
  GTP_cyclohydro2   5 eaklptrfgefrliayedkvdgkehlalvkgdi....pvlvRvHsecltgDvlgslrcdcgeqldealeliaeegrGvlvylrqegrgigllnk 94 
                      +  ++t++g+f+++ +++  ++++hla+vkg++       vRvHs   ++D++g +++ +++++++al++ia++++Gvlv++ +     +l++ 
       EGE23458.1 211 HFAIQTEHGDFTAYRFSEFGSDDTHLAFVKGKPtggvS-TVRVHSFSPMKDLFGIHTSGSRWNIQNALAKIATAEHGVLVWIGHDD-TLNLGDG 302
                      6789*****************************99955.6*******************************99*********9998.5****** PP

                      HHHHHHHHCT--HHHHHHHHT--S-----HHHHHHHHHTT--EEEEE-S-HHHHHHHCTT....SEEE CS
  GTP_cyclohydro2  95 lkayalqdeglDTveanlalglpadardygiaaqILkdlgvkkirLlTnnpekveaLegfgievverv 162
                      ++a++ ++       + ++ +++a ++++g++aqILk+lgvk++rLl++ p k++aL+gf+++vve +
       EGE23458.1 303 FEALKDKQ-------SVTSVNRRAPYQTIGVGAQILKHLGVKDMRLLSS-PIKFNALSGFDLNVVETI 362
                      *8877774.......4666667899************************.***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3016.06
//
Query:       EGE23459.1  [L=86]
Description: transglycosylase associated protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-11   43.0  11.2    3.9e-11   43.0  11.2    2.3  3  Transgly_assoc   Transglycosylase associated protein
  ------ inclusion threshold ------
       0.21   11.9  11.1        2.2    8.6   6.3    2.3  2  DUF2929          Protein of unknown function (DUF2929)
       0.43   10.4   5.1       0.15   11.8   1.2    1.9  2  Gly-zipper_YMGG  YMGG-like Gly-zipper


Domain annotation for each model (and alignments):
>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.15   9.2e+02      37      45 ..       7      15 ..       2      19 .. 0.48
   2 ?    3.2   0.8     0.018   1.1e+02       9      32 ..      12      32 ..       8      35 .. 0.64
   3 !   43.0  11.2   6.5e-15   3.9e-11       1      47 [.      34      79 ..      34      81 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.15
  Transgly_assoc 37 AiILLfivr 45
                    A I+ f+v+
      EGE23459.1  7 ALIVGFVVG 15
                    344444444 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.018
  Transgly_assoc  9 fvGgfllgllgigvgggelasliv 32
                    fv g+l+++l +   g + +++i 
      EGE23459.1 12 FVVGLLARALKP---GVDGMGWIL 32
                    777899999999...444444443 PP

  == domain 3  score: 43.0 bits;  conditional E-value: 6.5e-15
  Transgly_assoc  1 IilGivGAfvGgfllgllgigvgggelaslivaiiGAiILLfivrlv 47
                    +ilGi+GA vG f+++++g+ +++  ++ li+++iGAiILLfi+  +
      EGE23459.1 34 MILGIAGAYVGAFIADFVGV-NAQSGFSYLIFSVIGAIILLFIYEIL 79
                    69******************.***********************987 PP

>> DUF2929  Protein of unknown function (DUF2929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.3   0.00037       2.2       7      50 ..       4      49 ..       1      54 [. 0.82
   2 ?    5.9   0.2    0.0026        15      35      53 ..      62      80 ..      56      83 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00037
     DUF2929  7 ifWsfiLgevvgYIgsaLtgv..tydfttalilavvfgvlviliia 50
                ++W++i g+vvg  + aL+ +     + +++il++  + + ++i+ 
  EGE23459.1  4 MIWALIVGFVVGLLARALKPGvdGMGWILTMILGIAGAYVGAFIAD 49
                79****************9885666688888888888888887765 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0026
     DUF2929 35 lilavvfgvlviliialis 53
                li++v+ ++++++i +++ 
  EGE23459.1 62 LIFSVIGAIILLFIYEILA 80
                6899999999999988875 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.13   7.7e+02      35      43 ..      10      18 ..       8      27 .. 0.63
   2 ?   11.8   1.2   2.5e-05      0.15       8      34 ..      38      70 ..      33      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.13
                     XXXXXXXXX CS
  Gly-zipper_YMGG 35 aGalaGgai 43
                     +G ++G ++
       EGE23459.1 10 VGFVVGLLA 18
                     444444443 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.5e-05
                     XXXXXXXXXXXXXXXXXXXXX......XXXXXX CS
  Gly-zipper_YMGG  8 aiGAaaGAvvGaliGsgggkG......AaiGAa 34
                      +GA +GA + + +G +++ G       +iGA 
       EGE23459.1 38 IAGAYVGAFIADFVGVNAQSGfsylifSVIGAI 70
                     689************999999998888788886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 659.20
//
Query:       EGE23460.1  [L=204]
Description: YrdC-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-27   95.2   0.0    3.9e-27   94.9   0.0    1.1  1  Sua5_yciO_yrdC  Telomere recombination
  ------ inclusion threshold ------
       0.09   12.6   0.0       0.12   12.2   0.0    1.3  1  COR             C-terminal of Roc, COR, domain


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.0   4.4e-31   3.9e-27       2     170 ..      19     199 ..      18     204 .] 0.87

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 4.4e-31
                     HHHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-TC--HHHHH...........HHHCT-SSSCEEEEE.. CS
  Sua5_yciO_yrdC   2 alrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklaeseveeealk...........llerfwPGpitlllkrs 85 
                     +l++Gg++a+p e+v+gL+cda n +a+++++++K+r+  k l+vl +  e lk l++ + e+ +l                     +t+l + +
      EGE23460.1  19 YLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAERLKSLIDVSHETSLLDymqnfsdefthE----HSRALTWLIPIQ 109
                     79********************************************************555555555233333322112....34599*****99 PP

                     E-TS-HHHHTTTTEEEEEE-SSHHHHHHHHHCTS-......EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTS CS
  Sua5_yciO_yrdC  86 keklpkevapglktvGvrlPdtplarlLlealgep......lvaTSanlsgepsitdaeeveeelgeivdlildggeiavgvdstVvdlte 170
                     +++lp+++ ++ +t++vr+  +p+ ++L++al +p      lv+TS n s+++++++ +++   +g+++ ++ld++     ++s + dl+ 
      EGE23460.1 110 SSALPSVLIGSYDTLAVRITIHPVLKDLCHALISPtnpygfLVSTSCNPSKSTPAKNLTQAMGYFGDQI-AYLDTDGLGFVQPSCIKDLLA 199
                     999****************************9988999******************************9.799999888888998888875 PP

>> COR  C-terminal of Roc, COR, domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.3e-05      0.12      75     141 ..      43     109 ..       2     148 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
         COR  75 tnavyrvldskkvankkGilkredlekiwkekeypaeehdlllelmekfelcyelee.eedtylvpql 141
                 t+a++++++ k+    kG++  +d ++ +k+   + ++ + ll+ m++f   +  e+ +  t+l+p  
  EGE23460.1  43 TDAINQIINLKHRDIGKGLIVLTDAAERLKSL-IDVSHETSLLDYMQNFSDEFTHEHsRALTWLIPIQ 109
                 89*****************************7.****************7766666654678888854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1640.19
//
Query:       EGE23461.1  [L=414]
Description: DNA protecting protein DprA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-74  249.7   0.0    2.1e-74  249.3   0.0    1.2  1  DNA_processg_A  DNA recombination-mediator protein A
    1.7e-08   34.5   0.2    5.8e-08   32.7   0.2    2.0  1  DprA_WH         DprA winged helix domain
  ------ inclusion threshold ------
      0.015   14.9   0.1      0.042   13.4   0.1    1.7  2  LDcluster4      SLOG cluster4 family
      0.058   12.7   0.1       0.14   11.5   0.1    1.6  1  STALD           Sir2- and TIR-associating SLOG family


Domain annotation for each model (and alignments):
>> DNA_processg_A  DNA recombination-mediator protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.3   0.0   4.7e-78   2.1e-74       6     209 ..      81     288 ..      76     289 .. 0.97

  Alignments for each domain:
  == domain 1  score: 249.3 bits;  conditional E-value: 4.7e-78
  DNA_processg_A   6 giklltledkeYPeklkeikdpPlvLfvkGnlellekravaiVGtRkaseygkevakklakelaeagitivSGlAlGiDaaahraaleag....g 96 
                      + +++++d++YPe+lk+i+dpP+vLf++Gnl  l+ r++aiVG+R+++e +++++ +la++l+++g+t+ SGlA G+D+ ah +al++     g
      EGE23461.1  81 MYGIVYVSDEDYPETLKSIYDPPPVLFYRGNLIRLKDRQIAIVGSRSPTEIAQKITFDLAQYLVQSGYTVTSGLAQGVDKQAHLGALSQLsvlsG 175
                     567899*********************************************************************************9978888* PP

  DNA_processg_A  97 ktvavlgtgldkiyPkenrklleeiaeegglllseyppgtkpkkenFpeRnriiaglseavlvveaaekSGalitaelAlelgrevfavpgdits 191
                     +tv+v+gtg++ +yP+++++l+ +i+++gg+l+se++p t+++k++Fp+Rnr++agls a++v+eaa +SG+lita+l +e+g++vfa+p++i++
      EGE23461.1 176 RTVGVMGTGINVCYPRNHNALFAQIIKDGGCLISELLPATPASKHTFPRRNRLVAGLSLATVVTEAALQSGSLITARLSAEQGKQVFAIPSHIHN 270
                     *********************************************************************************************** PP

  DNA_processg_A 192 kesagtnklikegaklvt 209
                     ++++g+ +li+ega+l+ 
      EGE23461.1 271 PNAEGCLHLIREGATLIY 288
                     **************9985 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.2   1.3e-11   5.8e-08      19      60 ..     368     409 ..     352     410 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.3e-11
     DprA_WH  19 aaLgpePvhvDqLvrrtglpaaevsaaLleLELaGlverlpG 60 
                  aL +eP+ +DqLv  ++ ++++++a+L+eLE+ Gl+e+  G
  EGE23461.1 368 YALMNEPCDLDQLVFSSQKDTGSLLAELMELEILGLIEQVGG 409
                 57889**********************************998 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.4e-06     0.042       3      63 ..     119     181 ..     117     202 .. 0.88
   2 ?   -2.2   0.0       0.6   2.7e+03      99     127 ..     237     265 ..     221     276 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.4e-06
  LDcluster4   3 kigVmGsaeteakeealelaeelGrliAkegavlltGgrtGvmeaaskGakea....gGltvGil 63 
                 +i+++Gs +   +e a +++ +l+++++++g+++ +G  +Gv + a  Ga ++     G tvG++
  EGE23461.1 119 QIAIVGSRS--PTEIAQKITFDLAQYLVQSGYTVTSGLAQGVDKQAHLGALSQlsvlSGRTVGVM 181
                 89*******..7877889*******************************6554333379999986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.6
  LDcluster4  99 vviaiggrsGTlsEialaleegkpvivlk 127
                 vv     +sG+l    l++e+gk+v ++ 
  EGE23461.1 237 VVTEAALQSGSLITARLSAEQGKQVFAIP 265
                 33445678899999999999999998886 PP

>> STALD  Sir2- and TIR-associating SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     3e-05      0.14      48      90 ..     129     171 ..     108     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
       STALD  48 kkeaekfieklskelvkegfkivsGfGlgvGsavinGvleeiy 90 
                 ++ a+k++ +l++ lv++g+ ++sG   gv ++   G+l++++
  EGE23461.1 129 TEIAQKITFDLAQYLVQSGYTVTSGLAQGVDKQAHLGALSQLS 171
                 455889999******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3287.53
//
Query:       EGE23462.1  [L=471]
Description: threonine synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-32  111.3   0.0    4.9e-32  110.0   0.0    1.8  1  Thr_synth_N  Threonine synthase N terminus
    2.3e-14   53.5   0.0      6e-14   52.1   0.0    1.5  2  PALP         Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.096   11.8   0.0       0.17   11.0   0.0    1.3  1  PaaA_PaaC    Phenylacetic acid catabolic protein


Domain annotation for each model (and alignments):
>> Thr_synth_N  Threonine synthase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.0   8.3e-36   4.9e-32       1      79 []       2      79 ..       2      79 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 8.3e-36
  Thr_synth_N  1 kYiSTRgeaeklsfeeallkGlAeDgGLyvPeeiPklsaeeleelrklsYaelafevlklfiedeipeedLkeliekaY 79
                 +YiSTRg++++++f+++ll+GlA+DgGL++Pe++P++++++l+++r+lsY+elafe+++lf+ ++ip++dLk++i+k+Y
   EGE23462.1  2 QYISTRGKTQPMQFSDVLLMGLAPDGGLMLPETYPSIDEATLQKWRNLSYSELAFEIMSLFV-TDIPADDLKNIINKTY 79
                 6*************************************************************.***************9 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0     1e-17     6e-14      28     219 ..     102     309 ..      86     339 .. 0.78
   2 ?   -2.1   0.0      0.35   2.1e+03     246     280 ..     372     407 ..     353     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 1e-17
                 EGGGS.TTSBTTHHHHHHHHHH....HHTTTTTSEEEEEBSSHHHHHHHHHHHHH.T-EEEEEEETTS-.HHHHHHHHHTT.-EEEEE..CCHHHHHHH CS
        PALP  28 lEsln.ptgSfKdRgaeyllar....lkegtgaktvveassGNhgralAaaaall.Glkvtivvpadas.pekvallrllG.aevvev..ggdydeava 116
                 lE  n pt +fKd ++++l  +    lk+++++ tv+ a+sG++g a+ +a +   +++v    p+++  + ++a++ +l  a+++ +  +g +d++++
  EGE23462.1 102 LELSNgPTLAFKDIAMQFLGNAfeyvLKQKNERLTVIGATSGDTGSAAEYALRGKdNIEVFMMSPEGKMsAFQRAQMYSLDdANIHNIavEGMFDDCQD 200
                 5556669**********88888888*99999**********************9988999999888766367788888887799999999********* PP

                 HHHHHHHH.STTCEE--TTTSHHHHHH.HHTHHHHHH....HHTT..TTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S. CS
        PALP 117 aaaelaae.gegaylvsqfdnptvieg.ygtiglEil....eqlg..gkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragrr 207
                 ++++l ++ + +a +   + n+ ++    ++i++ ++    + ++  +k+  + vp G+ g+i++   + + + p    ++v ++++d l++++ +g++
  EGE23462.1 201 IVKALQEDaKFKAKYSLGTVNSINWGRiLAQIVYYFKgyfgATTDnaQKIS-FCVPSGNFGNICAGHIARQMGLPI-DRLIVATNENDVLNEFFNTGKY 297
                 **999999644444444444999**999********955553333434555.9*******************9995.666666778************* PP

                 SS..B.SSS.CC CS
        PALP 208 vtvpvsdtiadg 219
                 ++ ++ +t +++
  EGE23462.1 298 TPRTSVETYVTS 309
                 999988655544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHH CS
        PALP 246 eealeamrllarregivvepssaaalaal.klreag 280
                 ++ l+++++++ ++  +++p++a ++ ++ +l++a 
  EGE23462.1 372 QDRLATIKKVYDDTQRLIDPHTADGVKVAiELQKAD 407
                 556778888888889999999999999887766665 PP

>> PaaA_PaaC  Phenylacetic acid catabolic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.9e-05      0.17     170     228 ..     376     441 ..     365     452 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.9e-05
                 HHHHHHGGGGGGGG---HHH.......HHHHHTTSS--GGGGHHHHHHHHHHHHHHTT-----S-- CS
   PaaA_PaaC 170 eAlnrlwpyvlelfgpddae.......ealaekgkavdndeLrqkfeakvvpvleeagltlPdepa 228
                 + +++++  ++ l++p++a+        + a +++ v + +L +kf++++v+ + e++l  P++++
  EGE23462.1 376 ATIKKVYDDTQRLIDPHTADgvkvaieLQKADEMILVAETALPAKFQETIVEAVGEMTLPRPEHTQ 441
                 678899999999999999999999988777788999**************************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3708.72
//
Query:       EGE23463.1  [L=448]
Description: 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-57  192.9   0.0    7.6e-57  192.2   0.0    1.3  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    3.2e-16   59.8   0.0    6.5e-16   58.8   0.0    1.5  1  NusB             NusB family
    4.6e-09   36.3   0.0    8.2e-09   35.4   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    9.9e-07   28.5   0.0    6.5e-06   25.8   0.0    2.1  1  MTS              Methyltransferase small domain
    1.7e-06   28.6   0.0    4.3e-06   27.4   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
      3e-05   24.2   0.0    5.1e-05   23.4   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase
     0.0047   16.5   0.0     0.0083   15.7   0.0    1.4  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
  ------ inclusion threshold ------
      0.017   15.1   0.1      0.041   13.8   0.0    1.6  2  Methyltransf_18  Methyltransferase domain
      0.021   14.5   0.0      0.044   13.4   0.0    1.5  1  Cons_hypoth95    Conserved hypothetical protein 95
      0.027   14.1   0.0      0.049   13.2   0.0    1.3  1  NodS             Nodulation protein S (NodS)
      0.053   13.8   0.1      0.098   12.9   0.1    1.3  1  DUF4375          Domain of unknown function (DUF4375)
      0.069   12.9   0.6       0.12   12.0   0.6    1.3  1  DUF2913          Protein of unknown function (DUF2913)
       0.15   12.6   0.0       0.31   11.6   0.0    1.6  1  Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransfer
       0.18   12.3   0.4         12    6.5   0.0    3.1  3  RuvA_C           RuvA, C-terminal domain


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.2   0.0   5.9e-60   7.6e-57       8     199 ..     256     443 ..     248     444 .. 0.92

  Alignments for each domain:
  == domain 1  score: 192.2 bits;  conditional E-value: 5.9e-60
                      TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--..SEEEEES-CTCCHHHHCC..EEEEEEEE--CCGGGTTT-T CS
  Methyltr_RsmB-F   8 eeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvt..ntivleaDarkidkvlggelfDriLlDaPCsgtgvirrdp 99 
                       ++ +lD+c+aPGgKTth++e+  + ++++A+d n+ Rlkrv+en++rL +   ++ v++aD++      +++ fD iLlDaPC++tgv+rr+p
       EGE23463.1 256 SHQSVLDMCCAPGGKTTHLLEM-FHMKHLTAIDGNRIRLKRVHENISRLKLDtkDISVVHADGTSW---RSDQCFDVILLDAPCTATGVLRRHP 345
                      5788*****************9.78899********************988744788889998765...77788******************** PP

                      CHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEECTSEEE-T.TTTSS- CS
  Methyltr_RsmB-F 100 dvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglklgeeagtlrllP.htenkd 192
                      d+ l+r+e+dia+ ++lq+ +l+ ++  lk gGvl+Y TCs+l +Ene +i ++L++++d++ ++++ls p+++k ++++   + lP +t+  d
       EGE23463.1 346 DIGLLRQEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDANAIPFDLSLPHQIKQQVGY---QCLPlDTKGGD 436
                      *********************************************************************99998888888...8899457789* PP

                      SEEEEEE CS
  Methyltr_RsmB-F 193 gffiakl 199
                      gf++a l
       EGE23463.1 437 GFYYALL 443
                      *****88 PP

>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   5.1e-19   6.5e-16      11     133 ..      23     131 ..       8     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 5.1e-19
                 HHHHHHH-S-HHHHHHHHHHHT-.......--HHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT--GGGS-HHHHHHHHHHHHHHTTS-SSHHHHHHH.H CS
        NusB  11 lyqveinkedeeekeailqealnklleeedldeedkafltelvkgvlrnleelDeliekllknwplerlskvdraiLrlavyellylddvPakvainea 109
                 + ++        +++++l e+l+ ll+    +   ++f++el+ g+lr++  l ++ e+l+ ++p+   ++ ++a++ +++y+l+y+ ++P+++ain +
  EGE23463.1  23 IEEI--------LNGKSLSELLDPLLKST--EMSSRGFVHELLLGTLRQWWALSRISESLI-ENPVT--DQGVQAAINIGLYQLIYM-NIPEYAAINDT 107
                 4444........77778888888454444..45567***********************98.88888..89****************.*********** PP

                 HHHHHHHS-HHHHHHHHHHHHHHH CS
        NusB 110 velakkygdeksakFvNgVLrkva 133
                 ve+ k++g+e  +++vN++Lrk +
  EGE23463.1 108 VEALKQLGKEYGTGLVNAILRKTQ 131
                 *********************976 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   6.4e-12   8.2e-09       3     118 ..     256     396 ..     254     433 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 6.4e-12
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld..nveFeqgdieeleklledekfDlilsn.......evl... 84 
                      ++ +vlD  C+ G +t  l  e++ +++++ iD +   +++  en ++l+ld   +++ ++d ++     +d++fD+il +         l   
       EGE23463.1 256 SHQSVLDMCCAPGGKTTHLL-EMFHMKHLTAIDGNRIRLKRVHENISRLKLDtkDISVVHADGTSWR---SDQCFDVILLDapctatgV-Lrrh 344
                      6779****************.******************************9999**********88...36*********66666650.1555 PP

  Methyltransf_31  85 .............naladpdkileeiervlkpggilliedpr.....llael 118
                                    +++ + +il ++ + lk gg+ll  +++      +++ 
       EGE23463.1 345 pdigllrqeqdiaTTVNLQRSILDNLWSRLKVGGVLLYVTCSilkaeNERQI 396
                      555555777777699999************************6443333333 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   5.1e-09   6.5e-06      21     109 ..     245     337 ..     237     401 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 5.1e-09
                 HHHHHHCHCC.TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTSTTS-EEEEEE---STT CS
         MTS  21 klLletlpke.lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasdvleeveekkfdlivsNPPfha 109
                  lL+ tl+++  +++vlD++c  G  +++l+++    ++t++d +   l+  +en+++ kl+   ++vv+ d+++  +++ fd+i+   P  a
  EGE23463.1 245 FLLAPTLQSQgSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDGNRIRLKRVHENISRLKLDtkdISVVHADGTSWRSDQCFDVILLDAPCTA 337
                 58999***9987888**********************************************9999*********************9888655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   3.3e-09   4.3e-06       1      70 [.     260     331 ..     260     343 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 3.3e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBSSSTTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedlpfedgsfDlvvs 70 
                      vLd++c +G  t +l++ ++ +++t++D +   l++++e++++ +l   ++++v++d +++   d+ fD++++
       EGE23463.1 260 VLDMCCAPGGKTTHLLEMFHMKHLTAIDGNRIRLKRVHENISRLKLdtkDISVVHADGTSWR-SDQCFDVILL 331
                      9******************99********************99777888************8.678****987 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     4e-08   5.1e-05      22     149 ..     257     401 ..     182     403 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4e-08
                 T-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS..HHH.TTEEEECS-CCCSSHHHHHC.HCHHHSSEEEEEE--S-..........SS-CH.HHH CS
        FtsJ  22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..apl.pgvttiqgditdpetiekik.ealserkvdlvvsDgap..........dvsgv.hdl 105
                  + v+D ++aPGg +  ll+ ++  +++ a+D + +  + + ++++ ++ d +d ++  +    + s++++d+++ D             d+ +  +++
  EGE23463.1 257 HQSVLDMCCAPGGKTTHLLEMFHM-KHLTAIDGNRIrlKRVhENISRLKLDTKDISVVHADGtSWRSDQCFDVILLDAPCtatgvlrrhpDIGLLrQEQ 354
                 377******************986.99*********663336888888777766666553321455789********8656677777777776664777 PP

                 HHHHHCCCCHHHHCCHCCCCECCCE...EEECCCHCCCHHHHHHHHH CS
        FtsJ 106 deylqsqLllaalelalkllkpggt...fvlkifrgeeteallkqlk 149
                 d +++++L ++ l    + lk gg+   + + i++ e+  +++ +l+
  EGE23463.1 355 DIATTVNLQRSILDNLWSRLKVGGVllyVTCSILKAENERQIIDFLR 401
                 77777899999999999999999994433477777777778887766 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.5e-06    0.0083       3      77 ..     259     331 ..     257     374 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.5e-06
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfe..kviaieinleklacaqhNaevYgv.sdkitlvlgdvfellaklklekikvdlvfl 77 
                       +lD+++  GG++ ++ ++f+  +  ai+ n+ +l+ +++N        + i +v++d ++     +++++ +d+++l
       EGE23463.1 259 SVLDMCCAPGGKTTHLLEMFHmkHLTAIDGNRIRLKRVHENISRLKLdTKDISVVHADGTS----WRSDQC-FDVILL 331
                      69**************9997522789***************99998845669999998765....333444.444444 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.1   9.1e+03      92     112 ..     119     139 ..     119     154 .. 0.59
   2 ?   13.8   0.0   3.2e-05     0.041      15      86 ..     257     329 ..     249     332 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7.1
  Methyltransf_18  92 GgelileILeeakeklkkikk 112
                      G+ l+  IL++++++++k++k
       EGE23463.1 119 GTGLVNAILRKTQKSKTKFTK 139
                      566777888888665555443 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.2e-05
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagl.edkievrlsdGleklkeeevdtv 86 
                      +++v+D ++  g  + +l++  ++k+ +a+D n+  l++ +eni++ +l +++i+v+ +dG +  +++ +d++
       EGE23463.1 257 HQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDGNRIRLKRVHENISRLKLdTKDISVVHADGTSWRSDQCFDVI 329
                      5689*********************************************6678********998876657776 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.4e-05     0.044      36     128 ..     251     340 ..     247     362 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.4e-05
                    HCCCHCC-EEEETT-TTSHHHHHHHH.TT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH CS
  Cons_hypoth95  36 laaeiegarvLDlfaGsGalglEAlS.RgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakell 128
                    l++++ +++vLD+++  G+     l    +k+ ++++ ++  +k ++en+++lkl+ +   +++ +  ++++     + fd++ lD P  +  +
     EGE23463.1 251 LQSQGSHQSVLDMCCAPGGKTTHLLEmFHMKHLTAIDGNRIRLKRVHENISRLKLDTKDISVVHADGTSWRSD----QCFDVILLDAPCTATGV 340
                    7777888889998875555444433213799************************997777777777777555....68*******99876655 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.8e-05     0.049      39     111 ..     252     330 ..     236     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
        NodS  39 laqgsiadalevGcaaGalterl..apyckrltvvdvveeaiararervk....esshiswivsdvqqfstdekfdliv 111
                  +qgs  ++l++ ca G  t +l    + k+lt +d     ++r +e +     ++ +is + +d +   +d+ fd+i+
  EGE23463.1 252 QSQGSHQSVLDMCCAPGGKTTHLleMFHMKHLTAIDGNRIRLKRVHENISrlklDTKDISVVHADGTSWRSDQCFDVIL 330
                 4789999*********99999883335789******8777777766544311145789*******************97 PP

>> DUF4375  Domain of unknown function (DUF4375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   7.7e-05     0.098      23      93 ..      87     161 ..      83     168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.7e-05
                 HHHHHHHHHCT-HHHH..CCHHHHHHCTT--HHHHHHHHHHHHHHHHHHHHHHHHHTT.-HHHHHHH..-GGGHH CS
     DUF4375  23 nGGfvqlfqnssgefi..nealkalrliGaeelakllekakklykkgkeelereerde.elealyeee.eeefde 93 
                 n G  ql++    e++  n++++al+++G e+   l++ +++  +k+k +++++ +++ +l+++  ++ ++++ e
  EGE23463.1  87 NIGLYQLIYMNIPEYAaiNDTVEALKQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNhSLPNWLAKQlKQDWGE 161
                 56999**********999************************667777777776666648999988876555554 PP

>> DUF2913  Protein of unknown function (DUF2913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6   9.7e-05      0.12      17      47 ..     127     157 ..     120     162 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.7e-05
     DUF2913  17 LeashksgklvktpaaenhfLvkWltkaLKs 47 
                 L +++ks+ ++  ++++nh L +Wl+k+LK+
  EGE23463.1 127 LRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQ 157
                 77889999**********************8 PP

>> Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00024      0.31       1      89 [.     147     240 ..     147     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
                      --HHHHHHHHHHHGGGHHHHHHHHH-----EEE--TTS..TTHHHHHHH....-SS--B-TT-.TTEEES---...TTSHHHHTTS-EE--TTT CS
  Methyltr_RsmF_N   1 LPeeFiekmkellgeeaeaflaaleeprkkglRvNtlKisveeleklse....efelepvpwc.eeGfyleeeerpgkhplheaGlyYiQEpSa 89 
                      LP+   +++k+  ge ++++ ++l+  ++  lRvNt   +++++ ++ +    + +l +  +  ++++ l+   r g+ p++ +G++ +Q++ a
       EGE23463.1 147 LPNWLAKQLKQDWGEYYDELGRTLRFAAPIFLRVNTKFSDNASYCQILDehhiQHSLVSLGYNqAQAVRLDGGVRIGELPYFDEGWVSVQDAHA 240
                      6777888999999999999999999999999*****99999999998776755555666666625799999999*****************977 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.5   3.2e+03      22      43 ..      63      86 ..      62      87 .. 0.79
   2 ?    1.9   0.0      0.25   3.2e+02       2      14 ..     103     115 ..     102     117 .. 0.89
   3 ?    6.5   0.0    0.0093        12      10      21 ..     203     214 ..     202     216 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.5
                HHHHHHHC..-TTS-HHHHHHHHH CS
      RuvA_C 22 kAvakvla..npgasveelIraAL 43
                 A++++++   ++  +++++ aA+
  EGE23463.1 63 WALSRISEslIENPVTDQGVQAAI 86
                589999998666666999999997 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHCT CS
      RuvA_C   2 aledaveALlaLG 14 
                 a +d veAL+ LG
  EGE23463.1 103 AINDTVEALKQLG 115
                 67899*******9 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0093
                 HHHCTS-HHHHH CS
      RuvA_C  10 LlaLGYkekeae 21 
                 L++LGY++++a 
  EGE23463.1 203 LVSLGYNQAQAV 214
                 9*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3463.81
//
Query:       EGE23464.1  [L=341]
Description: methionyl-tRNA formyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-41  142.3   0.0    2.1e-41  141.6   0.0    1.3  1  Formyl_trans_N  Formyl transferase
    4.3e-21   75.0   0.2    7.3e-21   74.3   0.2    1.4  1  Formyl_trans_C  Formyl transferase, C-terminal domain
  ------ inclusion threshold ------
      0.055   13.7   0.0       0.11   12.8   0.0    1.5  1  APC_15aa        APC 15 residue motif


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.0   3.6e-45   2.1e-41       1     180 [.       9     201 ..       9     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 3.6e-45
                     -EEEEEESESSHHHHHHHHHHH..HTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCC............SCCCCCCCHHHH.HHHHCTT- CS
  Formyl_trans_N   1 kkivvlisgtgsnlqalldalk..kgsleadvvlvvsnkdkaaglekaeaasiptkvfeekk............leprsqfeeela.eelkelka 80 
                     ++i++   gt+++++  l++l   +  l+ ++v+v++++d++ g++++  as  ++v++ ++            ++p++    ++  e l+++++
      EGE23464.1   9 MRIIFA--GTPEFAAVSLKHLIdlQDVLNIQIVAVYTQPDRKSGRGQKLTASAIKQVAQVYNipveqpisfslkYQPEQGVSGAVSrETLANYQP 101
                     677777..55555555555554115566799*****************************************99999977777765167999*** PP

                     SEEEEES--S---HHHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHH CS
  Formyl_trans_N  81 dlivlagymkllpkelvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehk 175
                     d++++a+y+++lp  +++ ++ ++lniH SLLPr++Gaa+iqra+ aGd+etG+ti+++  +lDtG++l++ +++i+ +dt ++l +++a  + +
      EGE23464.1 102 DIMIVAAYGLILPLGVLKIPKFGCLNIHASLLPRWRGAAPIQRAIMAGDQETGITIMQMATGLDTGDMLYRVSCPILDTDTTQTLHDKLAVIGAH 196
                     ****************************************************************************************9988888 PP

                     HHHHH CS
  Formyl_trans_N 176 alvea 180
                     a+ ++
      EGE23464.1 197 AITTV 201
                     77766 PP

>> Formyl_trans_C  Formyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.2   1.2e-24   7.3e-21       1      98 [.     225     325 ..     225     327 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 1.2e-24
                     ..-GGGGB--TTSBHHHHHHHHHHT-TS--EEEEETTEEEEEEEEEEE-S--SS-..TTSEEETT..TEEEE-S.BSE.....EEEEEEEETTS- CS
  Formyl_trans_C   1 kikkedgridwnqsaeeihnlvrglspwPgayttlngkrvkllkaevvsesssaes.pGtivavdkggllvacg.dga.....llilelqlegkk 88 
                     ki+ ++g+idwnq+a +i++++r+l    +a+t+++++r+k+l+a + + +++++   G+iv+v+k+++lv cg d+      ++i+++q +g+k
      EGE23464.1 225 KIHTQEGLIDWNQDALTIQRQIRAL----NAHTYHKSERIKVLSALPIKFDQTTSIpAGQIVSVGKNAILVSCGaDTNgiqhlINITSIQWPGGK 315
                     899**********************....8******************8877766689****************555599*************** PP

                     -EEHHHHHHH CS
  Formyl_trans_C  89 amsaedflng 98 
                     +++ae++++ 
      EGE23464.1 316 PLTAEQICQT 325
                     ******9975 PP

>> APC_15aa  APC 15 residue motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05      0.11       3      12 ..      72      81 ..      71      84 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
    APC_15aa  3 DQPtDYSlKY 12
                +QP+ +SlKY
  EGE23464.1 72 EQPISFSLKY 81
                9********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2650.26
//
Query:       EGE23465.1  [L=222]
Description: riboflavin synthase subunit alpha [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-43  147.0   1.9    4.8e-22   77.7   0.3    2.1  2  Lum_binding  Lumazine binding domain


Domain annotation for each model (and alignments):
>> Lum_binding  Lumazine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.3   2.7e-26   4.8e-22       1      87 []       3      87 ..       3      87 .. 0.95
   2 !   69.1   0.1   1.3e-23   2.3e-19       2      87 .]     101     187 ..     100     187 .. 0.93

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 2.7e-26
                 -S--SEEEEEEEEE.ECGCTTEETEESGGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding  1 tGiVeevgtvesiekeekledltielpelakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87
                 tGi+e++g+++si++ +   +l i++p+++   v+ Gdsia nG+cLTVv  ++ ++++ vdv++eTl++t+l+++++gd+VNlE a
   EGE23465.1  3 TGIIETTGRLKSINQIGGDVQLVIHAPDMDFNDVHLGDSIASNGICLTVV--DIGDKTYAVDVSRETLSKTALKNWRTGDTVNLEKA 87
                 8************87788999999999**********************9..899******************************75 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 1.3e-23
                  S--SEEEEEEEEE.ECGCTTEETEES.GGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGG.G--TTSEEEEEEE CS
  Lum_binding   2 GiVeevgtvesiekeekledltielp.elakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlg.elkvgdkVNlEra 87 
                  G+V++vg +++i+k+ ++  ++ie+p el++y ++kG si+v+G++LT ++ + e++ + +++ip+T + t++  +++vg  VN+E++
   EGE23465.1 101 GHVDGVGVIRHISKDARSIYIEIEIPsELMRYAADKG-SITVDGISLTTNAIKPEQNIVCLNIIPHTAKCTNIDrHWSVGGLVNIEVD 187
                  9***********99989999999999***********.***********9655669*****************8589*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1786.39
//
Query:       EGE23466.1  [L=350]
Description: riboflavin biosynthesis protein RibD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-38  133.2   0.0    1.5e-38  132.6   0.0    1.3  1  RibD_C           RibD C-terminal domain
    1.1e-21   76.6   0.0    1.9e-21   75.8   0.0    1.4  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    4.3e-13   49.2   0.0    6.9e-13   48.5   0.0    1.3  1  MafB19-deam      MafB19-like deaminase
     0.0014   18.5   0.0     0.0029   17.5   0.0    1.6  1  Inv-AAD          Invertebrate-AID/APOBEC-deaminase
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.022   14.7   0.0    1.5  1  APOBEC_N         APOBEC-like N-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.0   4.2e-42   1.5e-38       1     179 [.     157     320 ..     157     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 4.2e-42
                 -EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHHHTT.G.SS-EEEEEETTS-S-TTSH..HHH CS
      RibD_C   1 pyvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGrgtvladnpsltvrwvkkreaeadaea.rqpvrvVvdstlrvpldak..vlt 96 
                 pyv lk+a SlDG++a+a+geskwitg ear+dv++lra++ ai+ G+gt++adnp+ltvr  +            +p  v+vd+++r+ +  +  vl+
  EGE23466.1 157 PYVRLKTASSLDGRTAMASGESKWITGIEAREDVQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVD--LH-MlPKPKVVIVDRRNRLSDLDDyqVLN 252
                 8*************************************************************999633..23.369************87644355*** PP

                 SSS-EEEEESSCSCHHHHHHCCESE-HHHHHHHHHHT.T--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSSSSS CS
      RibD_C  97 ddaptlvatteeadkekveklkvrvdlkelleeLker.girsllveGGatLagsllraglvDelrlyiaPkllGgagktlfdge 179
                 +d  tl+ +                 l +ll++L  +  + ++l+e+G+ L g+++ +glvDel++y aP +lG++++++f  +
  EGE23466.1 253 RD-DTLIWRND---------------LMSLLKTLVSQyACYDVLIEAGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQ 320
                 99.77777766...............**********99*************************************777776533 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   5.4e-25   1.9e-21       3     100 ..       9     109 ..       7     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 5.4e-25
                      HHHHHHHHHHHHHHHHH..TTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCETTEEEEEEE--BHH......HHHH CS
  dCMP_cyt_deam_1   3 kdekllelalkaakeaq..kcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaaknggsklegatlyvtlePCsm......Caka 88 
                      +d ++++la++aak+    + +n+ VG+v+vk+  +i++gy+ ++ g++   HAE++A++ a  + g + +gat yvtlePCs+      Ca+a
       EGE23466.1   9 QDIYYMQLAIAAAKKGIytTRPNPAVGCVLVKDSLVIGQGYHPKA-GQP---HAEIFALADAKAQ-GFDTKGATAYVTLEPCSHtgrtppCADA 97 
                      7889***********9889*************************5.777...**********988.88999*********************** PP

                      HHHHT-SEEEEE CS
  dCMP_cyt_deam_1  89 iiqsgikkvvvg 100
                      +i +  k+vv++
       EGE23466.1  98 LIAADLKRVVIA 109
                      **********97 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.9e-16   6.9e-13       6     136 ..      13     151 ..       8     153 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.9e-16
  MafB19-deam   6 afrkalaevekatkik..edkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCd......mCagaivqaglk 95 
                  +++ a+a ++k++  +  +  +g+v vkd+ vi++g+      +    HaEi al  A  k ++   ++at yvtlepC+      +Ca a++ a+lk
   EGE23466.1  13 YMQLAIAAAKKGIYTTrpNPAVGCVLVKDSLVIGQGYHP----KAGQPHAEIFALADA--KAQGFDTKGATAYVTLEPCShtgrtpPCADALIAADLK 104
                  56666677777665551145699***************4....55889**********..6666666************64444448*********** PP

  MafB19-deam  96 klvygagnpks......lnkLkvkekngrvelveddckeilkgffkk 136
                  ++v ++ +p+       ++kL+   +   v + +++ +++  gf+k+
   EGE23466.1 105 RVVIASLDPNPkvagngIKKLQNAGIEVLVGVCDQQAAALNLGFLKA 151
                  *****998877778888888886666665555566666666666665 PP

>> Inv-AAD  Invertebrate-AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     8e-07    0.0029      50     116 ..      72     134 ..      35     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8e-07
     Inv-AAD  50 lpkntvlYttmepCskRlsGnlpCveRilklkeaiktvyvGvkePekfvaenkgrkkleeagievvh 116
                  +k +  Y t+epCs+      pC + +++    +k+v +   +P+  va n g kkl++agiev  
  EGE23466.1  72 DTKGATAYVTLEPCSHT-GRTPPCADALIAA--DLKRVVIASLDPNPKVAGN-GIKKLQNAGIEVLV 134
                 4566778*******974.3355899999875..6899************987.999********864 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.1e-06     0.022      34      95 ..      46     101 ..      21     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.1e-06
                 EEEEEEEE-..SSTBCHHHHHHHHHHHHT--.TTEEEEEEEEESS-S-HH......HHHHHHHH CS
    APOBEC_N  34 kkGvLrnqsgaaaskHaEelflediedqelrepkkkyeitlYvswsPChessde..Caeklaaf 95 
                  +G+ + ++g+    HaE + l+d + q  +        t Yv++ PC +   +  Ca++l a+
  EGE23466.1  46 GQGY-HPKAGQ---PHAEIFALADAKAQGFD----TKGATAYVTLEPCSHTGRTppCADALIAA 101
                 5666.555555...8*****99997766555....45679**********8888****998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2552.70
//
Query:       EGE23467.1  [L=156]
Description: transcriptional regulator NrdR [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-16   58.9   0.4    7.9e-16   58.4   0.4    1.2  1  ATP-cone         ATP cone domain
     0.0045   17.3   0.4     0.0073   16.7   0.4    1.4  1  Lar_restr_allev  Restriction alleviation protein Lar
  ------ inclusion threshold ------
        0.1   12.6   1.6       0.18   11.8   1.6    1.4  1  Zn_Tnp_IS1595    Transposase zinc-ribbon domain


Domain annotation for each model (and alignments):
>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.4   1.3e-19   7.9e-16       2      85 ..      50     136 ..      49     137 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.3e-19
                 EEE-TTS-EEE--HHHHHHHHHHHHHH...-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHH CS
    ATP-cone   2 kViKRdGtvepfdvekIkraiekAceg...seeeideiaeeveaevrkrlrdgisteeIqdlvektliehpdyavaaayilyrnlrk 85 
                 ++iK + ++ep+d++k++r+i+  +++   s +ei++ ++++e e+rk +++++s++ ++++v+++l+  +d+a+++++++yr++++
  EGE23467.1  50 RIIKTNSRIEPYDQSKLRRSISLPLQKrpiSVDEIEACISRIEHELRKTGEREVSSKILGEIVMNELKILDDVAYVRFASVYRDFQD 136
                 69****************************9999**************************************************987 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   1.2e-06    0.0073       6      36 ..       3      36 ..       1      58 [. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.2e-06
  Lar_restr_allev  6 CPfCggravlersqrvvaeigq...cvyCadCga 36
                     CPfC+++++++++ r +ae++q     +C  Cg 
       EGE23467.1  3 CPFCNKADTKVTDSRLAAEGAQvrrRRQCLACGE 36
                     *******************999***666666665 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.6     3e-05      0.18      20      45 ..       2      36 ..       1      37 [. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
  Zn_Tnp_IS1595 20 vCPhCgsr..kayrikt.......rglfqCkeCrk 45
                   +CP+C ++  k++  +        r++ qC +C++
     EGE23467.1  2 HCPFCNKAdtKVTDSRLaaegaqvRRRRQCLACGE 36
                   6*****9975444433388**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1238.42
//
Query:       EGE23468.1  [L=466]
Description: tRNA modification GTPase TrmE [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-54  185.7   2.0    1.4e-54  185.4   2.0    1.1  1  MnmE_helical  MnmE helical domain
    2.1e-34  118.3   0.0    9.8e-34  116.1   0.0    2.1  2  TrmE_N        GTP-binding protein TrmE N-terminus
    3.5e-23   81.9   0.2    5.9e-23   81.1   0.2    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
    1.1e-09   38.0   0.1    1.7e-09   37.4   0.1    1.3  1  FeoB_N        Ferrous iron transport protein B
    4.6e-07   29.6   0.0    8.8e-07   28.7   0.0    1.5  1  Ras           Ras family
    3.5e-05   23.8   0.7     0.0041   17.0   0.2    2.6  2  RsgA_GTPase   RsgA GTPase
    0.00019   20.9   0.3    0.00029   20.2   0.3    1.3  1  AIG1          AIG1 family
    0.00032   20.7   0.4     0.0029   17.6   0.0    2.5  3  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
    0.00084   19.4   0.9      0.016   15.3   0.1    2.3  2  Dynamin_N     Dynamin family
    0.00098   19.3   0.0     0.0021   18.2   0.0    1.6  1  Roc           Ras of Complex, Roc, domain of DAPkinase
     0.0043   16.2   0.5     0.0083   15.3   0.1    1.6  2  MCM           MCM P-loop domain
  ------ inclusion threshold ------
      0.027   13.9   0.0      0.044   13.1   0.0    1.4  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
      0.066   13.7   0.0       0.18   12.4   0.0    1.7  1  ABC_tran      ABC transporter
      0.091   12.2   0.5        0.4   10.1   0.5    2.1  1  Arf           ADP-ribosylation factor family
       0.12   12.6   0.0       0.22   11.8   0.0    1.4  1  AAA_28        AAA domain


Domain annotation for each model (and alignments):
>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   2.0   1.2e-57   1.4e-54       1     206 []     126     463 ..     126     463 .. 0.94

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 1.2e-57
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical   1 LtqaEavadlIdAeteaaakaalrqleGelskkikelrekllellaeleaaiDFpe.edleelseeelaekleelkeelekllatakrgellreGik 96 
                   L+qaEa++d I+A++ a+a +a+r+l+Ge+s+ki+el +kl++l+ ++ea+iDFpe ed+++ls+  +++kl+e+ + ++++latak+g+llr+G++
    EGE23468.1 126 LVQAEAISDAISATSVAQATSAIRSLTGEFSQKINELLDKLVHLRLYVEASIDFPEeEDVDFLSDGIIENKLTEILSGIDRILATAKQGQLLRDGVH 222
                   89******************************************************666************************************** PP

                   ................................................................................................. RF
  MnmE_helical  97 ................................................................................................. 96 
                                                                                                                    
    EGE23468.1 223 vvlagkpnagkssllnrlsgteraivteiagttrdtleetlilngltvhltdtaglrktddhvekigikrafdairqadvlmmvydvttetdplala 319
                   *************************************************************************************999999999999 PP

                   ...........................xxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical  97 ...........................Dllkeke.......ekeeeevlkiSaktgegieeLeeaike.leleeieeeplltnaRhkealekaleal 158
                                              Dll +k        +k+  + +++S++tg g++eL e +++ + ++   e++l++++Rh++al++a+   
    EGE23468.1 320 dqlfcegvtedvgdiirqklilvanksDLLISKPvlqvsceTKSAPKLVYVSCETGVGLDELIEILTQkVGFHP-PENSLIARTRHLDALNRAKGYA 415
                   99999999999997777777777777766665557888887677777779****************99444422.4669****************** PP

                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical 159 eeakealeaglpldlvaedLrealeaLgeItGevvtedlLdeIFskFC 206
                    ea e+l+ + + +lvae+Lr++++aLgeItG+++ ++lL++IFs+FC
    EGE23468.1 416 IEAYEQLTIYHAGELVAESLRQSQQALGEITGQMSADELLGKIFSSFC 463
                   **********99************************************ PP

>> TrmE_N  GTP-binding protein TrmE N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.0   8.2e-37   9.8e-34       1     115 []      10     123 ..      10     123 .. 0.93
   2 ?   -1.4   0.0       2.4   2.9e+03      99     108 ..     148     157 ..     128     214 .. 0.63

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 8.2e-37
                 -EEEE-S-SSS-SEEEEEEESTTHHHHHHTTEEE.T--CTEEEEEEEECT..TCEEEEEEEEEEBTTCSTTSSEEEEEEEESSHHHHHHHHHHHHCTT- CS
      TrmE_N   1 TIaAlatpagkgaiaiiRvsGpkaleiakklfkk.elkprkallgklvdeeekevlDevlvlvfkaprsyTgedvvElhlhGgpavvkavleallkaga 98 
                 TIaA+a+p+g+g+++iiR+sG++a +i   ++++ +l pr+a++g ++ +  + v+De+++++fkap+s+TgedvvEl+ hGg+++ + +l+++++ ga
  EGE23468.1  10 TIAAIASPIGQGGVGIIRLSGKDAYRIGCLMTRRsNLIPRMAYFGGFYGQ--EGVIDEGVIIYFKAPHSFTGEDVVELQGHGGMVLQNMLLARVFELGA 106
                 9************************99977766545669********954..668******************************************** PP

                 EE--CTHHHHHHHHTTS CS
      TrmE_N  99 rlAepGEFtkRaflngk 115
                 r+A +GEF+ Raf n+k
  EGE23468.1 107 RQAAAGEFSYRAFENDK 123
                 ***************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
                 EE--CTHHHH CS
      TrmE_N  99 rlAepGEFtk 108
                      GEF++
  EGE23468.1 148 IRSLTGEFSQ 157
                 2223333333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.2     5e-26   5.9e-23       2     114 .]     223     345 ..     222     345 .. 0.79

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 5e-26
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS.HHHHHH.HHHHHHHHHHCTSEEEEEEETT........... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie.gaseek.glgkaflaleeadlillvvdas........... 86 
                 v+++G+pN+GKS+L+n+l+g+ +aiv++++gtTrd+ e+++ l+g  ++l+Dt+Gl + +++ ek g+++af a+++ad++++v d++           
  EGE23468.1 223 VVLAGKPNAGKSSLLNRLSGTeRAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKtDDHVEKiGIKRAFDAIRQADVLMMVYDVTtetdplaladq 321
                 89******************889*******************9************65466666667********************8854333332221 PP

                 TTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  87 eeklkpldeeleelleeakkplilvlnk 114
                     + + e++ +++   +++lilv+nk
  EGE23468.1 322 L-FCEGVTEDVGDII---RQKLILVANK 345
                 0.1122445566665...4788999987 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   1.4e-12   1.7e-09       2     102 ..     222     323 ..     221     382 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.4e-12
                 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyLtl 99 
                 +v+l+G+pn+Gk++l+n+l+g++   v   +G+t +  e +l l+g +v+++D  G  + +++ e   + r f + +++dv++ v d t+    L L  
  EGE23468.1 222 HVVLAGKPNAGKSSLLNRLSGTErAIVTEIAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRQADVLMMVYDVTTETDPLALAD 320
                 799******************9825689*************************************************************9999999999 PP

                 HHH CS
      FeoB_N 100 qll 102
                 ql+
  EGE23468.1 321 QLF 323
                 986 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   7.3e-10   8.8e-07       2     158 ..     223     387 ..     222     390 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 7.3e-10
                 EEEEESTTSSHHHHHHHH..HHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHH........HHTTESEEEEEEETTBHH.HHHT CS
         Ras   2 lvlvGdsavGKtslllrf..vkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrel........yyrdaegillvyditsre.sfen 89 
                 +vl G+ + GK+sll+r   ++    +e   T   d +++++ ++g +v+  + DTAG  + +   e+         +r+a+++++vyd+t ++  +  
  EGE23468.1 223 VVLAGKPNAGKSSLLNRLsgTERAIVTEIAGTT-RDTLEETLILNGLTVH--LTDTAGLRKTDDHVEKigikrafdAIRQADVLMMVYDVTTETdPLAL 318
                 8999************99445677888888898.9999999999987776..57****765544332211112222589***********977516776 PP

                 HH.HHHHHHHHHST..TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHH CS
         Ras  90 vk.kwveeikrvae..envpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellr 158
                 ++  ++e +++ +    + +++Lv+nK+Dl  ++ v + + e + +  +l +  +S +t  +++e++e l++
  EGE23468.1 319 ADqLFCEGVTEDVGdiIRQKLILVANKSDLLISKPVLQVSCE-TKSAPKLVY--VSCETGVGLDELIEILTQ 387
                 664566778888876644699*********998888776665.233333444..455666666666666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   3.4e-06    0.0041      97     163 ..     217     280 ..     196     284 .. 0.74
   2 ?    4.2   0.0      0.03        36      48     101 ..     338     389 ..     332     391 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.4e-06
                  CTT.SEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SSSS CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGfre 163
                  l+d   +vl+G+  +GKS+L+n+l +++++ + e+  ++   + T  ++ +l+      l Dt G+r+
   EGE23468.1 217 LRDgVHVVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTT---RDTLEETLILNGL-TVHLTDTAGLRK 280
                  55546689*******************999999998754...4444333333333.555677777665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.03
                  EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSE CS
  RsgA_GTPase  48 epvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdkt 101
                  ++++v nK Dll ++  + +++ e++++  ++++vs +t+ gl+el e l++k+
   EGE23468.1 338 KLILVANKSDLLISKP-VLQVSCETKSA-PKLVYVSCETGVGLDELIEILTQKV 389
                  679999********99.77777777777.899999*************999886 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   2.4e-07   0.00029       2     129 ..     222     349 ..     221     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.4e-07
                 EEEEESSTTSSHHHHHHHHHTS--.SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETT....B CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkka.FesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslg....r 95 
                  +vl Gk  +GkS+  N + g++    ++   ++ t+   +++   +g +++  DT gl  ++++ +ki   i+r +   ++  ++l++v +++     
  EGE23468.1 222 HVVLAGKPNAGKSSLLNRLSGTERaIVTE--IAGTTRDTLEETLILNGLTVHLTDTAGLRKTDDHVEKIG--IKRAFDAIRQ-ADVLMMVYDVTtetdP 315
                 69*****************9988625555..5889999999999*********************99875..7999999888.8999999666621114 PP

                 -SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG CS
        AIG1  96 fteedekalktlkelFGekilkylivvftrkddl 129
                 +   d+   + ++e  G+ i ++li+v  + d l
  EGE23468.1 316 LALADQLFCEGVTEDVGDIIRQKLILVANKSDLL 349
                 5568999999999999999999999997776655 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.7   4.5e+03      64      79 ..     123     138 ..     121     167 .. 0.62
   2 ?   -0.2   0.0      0.83   9.9e+02      19      53 ..     162     196 ..     147     198 .. 0.75
   3 !   17.6   0.0   2.4e-06    0.0029      57     103 ..     338     388 ..     281     391 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.7
  MMR_HSR1_Xtn  64 KiDlisleeldelare 79 
                   KiDl++ e +++  + 
    EGE23468.1 123 KIDLVQAEAISDAISA 138
                   8888887776654443 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.83
  MMR_HSR1_Xtn  19 tvkkilkeykihnaevliredvtvDdlidviegnr 53 
                      k+++   +++a++ + e+ +vD l d i +n+
    EGE23468.1 162 LLDKLVHLRLYVEASIDFPEEEDVDFLSDGIIENK 196
                   45555566667888899999999999999988875 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 2.4e-06
  MMR_HSR1_Xtn  57 pclyvlNKiDl.isleeldelare...pnsvviSaekelnldeLkekiwee 103
                   + ++v NK Dl is+  l+  +++   p+ v +S+e++++ldeL e + ++
    EGE23468.1 338 KLILVANKSDLlISKPVLQVSCETksaPKLVYVSCETGVGLDELIEILTQK 388
                   6799******966666666666645668****************9977665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.3e-05     0.016       1      35 [.     223     258 ..     223     264 .. 0.78
   2 ?    2.7   0.1     0.097   1.2e+02     100     140 ..     267     311 ..     258     345 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SS.S---S- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpn.ptTrrp 35 
                 +++ G+ ++GKSS+ln L g +   + ++  tTr +
  EGE23468.1 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIaGTTRDT 258
                 6889****************8766655542666655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.097
                 S-SEEEEE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETTS CS
   Dynamin_N 100 vkgltlvDlPGldsvnkrdq....elvkeyikkadiilavtsanh 140
                   ++ l D+ Gl +++++ +    + ++ +i++ad++++v +  +
  EGE23468.1 267 GLTVHLTDTAGLRKTDDHVEkigiKRAFDAIRQADVLMMVYDVTT 311
                 568999********9999889999999*********999988765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.8e-06    0.0021       2     119 ..     223     347 ..     222     348 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.8e-06
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTT......T-HHH..HCTSCEEEEEEEGHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrs......lhply..lreaalailvydsrss 92 
                 vvl G+ ++GK+sll+r+   +     +++ g +  t  +   +   ++  ++ +++++ DtaG  +++       +++ +  +r+a+++++vyd +++
  EGE23468.1 223 VVLAGKPNAGKSSLLNRLSGTERAI-VTEIAGTTRDT--L---E---ETLILNGLTVHLTDTAGLRKTDDhvekigIKRAFdaIRQADVLMMVYDVTTE 312
                 89****************9766542.23333333222..2...1...1223455889*******88776422223356677556999********6655 PP

                 H...CH..HHHHHHHHHHCSSS...-EEEEEE-TT CS
         Roc  93 e...nl..keWlkelkkvagks...pvilvgnkiD 119
                 +    l  +   + +++ +g++   ++ilv+nk D
  EGE23468.1 313 TdplALadQLFCEGVTEDVGDIirqKLILVANKSD 347
                 31222233568899998888643337999****99 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.6   4.4e+03     142     167 ..     116     141 ..      88     158 .. 0.55
   2 !   15.3   0.1   6.9e-06    0.0083      47      97 ..     210     259 ..     192     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.6
                 HHHHHHSEEEEESSSCEEEEE--EEE CS
         MCM 142 hEamEqqtisiaKaGivatLnartsv 167
                 + a+E+++i + +a  +    + tsv
  EGE23468.1 116 YRAFENDKIDLVQAEAISDAISATSV 141
                 44556666665555433333333444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 6.9e-06
                 BBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHS CS
         MCM  47 kledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagL 97 
                 ++++++ lr  ++v+l g p  +Ks lL++++  ++ra+ t ++g++   L
  EGE23468.1 210 TAKQGQLLRDGVHVVLAGKPNAGKSSLLNRLS-GTERAIVTEIAGTTRDTL 259
                 44566779***********************9.78999***9999998776 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.7e-05     0.044       2      89 ..     223     312 ..     222     353 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-05
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvg...vliyVfDvesr 89 
                 v+L Gk ++GK+s+ + +     a  t   g+t d+ ++++ +l+ lt++l D  G ++  ++  +   ++ f  +    vl+ V Dv+++
  EGE23468.1 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGTTRDTLEETL-ILNGLTVHLTDTAGLRKTDDHVEKIGIKRAFDAIRqadVLMMVYDVTTE 312
                 899**************998888888888888888888888.9*************988877766665565555544444********966 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015      0.18       9      43 ..     218     252 ..     215     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkpteGeil 43 
                 + g  v++ G+  aGKS+Ll+ l+g ++    ei 
  EGE23468.1 218 RDGVHVVLAGKPNAGKSSLLNRLSGTERAIVTEIA 252
                 568899********************998777773 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.5   0.00033       0.4      12      70 ..     218     280 ..     207     389 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00033
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEE.EEEEETTEEEEEEEE-SSGG CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt...tvPTigfnv.eeleiknlkftvwDvGGqek 70 
                 +  ++++l G  naGK+ +l++l+  e +    +  T+  +  e+l  ++l++++ D  G +k
  EGE23468.1 218 RDGVHVVLAGKPNAGKSSLLNRLSGTERAIvteIAGTTRDTLeETLILNGLTVHLTDTAGLRK 280
                 456899*****************9887654112444444444145666889999999888665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00018      0.22       2      33 ..     223     254 ..     222     304 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
      AAA_28   2 ivitGgestGKTtlleaLaargypvvpEaare 33 
                 +v+ G + +GK++ll++L+ ++  +v+E+a +
  EGE23468.1 223 VVLAGKPNAGKSSLLNRLSGTERAIVTEIAGT 254
                 899***********************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3221.17
//
Query:       EGE23469.1  [L=31]
Description: hypothetical protein EA1_08944 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       109  (0.00607954); expected 358.6 (0.02)
Passed bias filter:                       66  (0.00368119); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 233.94
//
Query:       EGE23470.1  [L=547]
Description: putative inner membrane protein translocase component YidC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-76  255.8   0.4      9e-76  255.4   0.4    1.1  1  YidC_periplas  YidC periplasmic domain
    9.4e-59  198.0  12.4    1.6e-58  197.3  12.4    1.4  1  60KD_IMP       60Kd inner membrane protein
  ------ inclusion threshold ------
       0.15   11.7   3.5       0.37   10.4   0.3    2.7  3  Wzy_C          O-Antigen ligase
        2.4    8.0   4.0        1.2    8.9   0.0    2.3  2  DUF3989        Protein of unknown function (DUF3989)


Domain annotation for each model (and alignments):
>> YidC_periplas  YidC periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   0.4     2e-79     9e-76       2     282 ..      73     346 ..      72     347 .. 0.92

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 2e-79
                    EEEE-SS-EEEEETBTTEEEEEEEEEEESSTT-SS.EEEECEEETTEEEEEEEEEESTT-.TTSGGS--B-B-S-SEEE--TT-SEEEEEEEEE-T CS
  YidC_periplas   2 itvdtdvlegsislkGgriddleLkkYketldkdskpveLlspegaetyvaqsglvgagggkaldprktvftaeegeyelaeltdelpvtLtwdng 97 
                    itv+td++e++i+  Gg+i+ + Lk++++t+d+++ p++Ll+ ++ +tyvaqsgl+g + g++  + + v+++ +++y l+    +l+v+Lt+ + 
     EGE23470.1  73 ITVSTDRYEIKINPVGGDIVYAALKQHNATKDSTE-PFVLLE-TDLRTYVAQSGLIGRD-GIDTAEGRAVYHSPRSSYVLNPSAGSLQVPLTYHK- 164
                    8**************************99999988.*****9.66699********754.8999999999***********************98. PP

                    TS-EEEEEEEEETT-SEEEEEEEEE--SSS-EEEEEEEEEEEE--.------..----.--EEEEEEETTTCCEEEEHHHHHT..T---EEEEES- CS
  YidC_periplas  98 nGltftktytldrdsYlitvtdeveNtsgapvtlapygqlkrdpeeaseees..mfai.tyegaagvtdeeklqkvkfkdlekdkkakkekktggg 190
                    +Glt+tktyt+++++Y i+++++++N+s++p+++++y+qlkrd+++++++e+  m  + ty g+a+ ++++ ++k+kf++ +++     + ++++g
     EGE23470.1 165 DGLTITKTYTFNAGQYPINLSYNINNNSNQPWQGQMYAQLKRDSSKDPGLEDkgMLGMsTYLGGAWGVPSDPYNKLKFSNFDDN----INISSKDG 256
                    9******************************************6666744444677778**********************664....44567899 PP

                    EEEEEETTEEEEEEEE.SSSEEEEEEEEEE.TEEEEEEEE.--EEE-TT-EEEEEEEEEEEE--HHHHHHH.TTGGGHHHHHHHHHHTSHHHH CS
  YidC_periplas 191 WvamtqkYFlsAlipdqdaetnefyarkkkkdlyqagylsapavtvapgasasvtarlfaGPkevktlkai.pgLdlavDyGwltfitkplfw 282
                    Wva++q+YF+sA+ p+ ++ +++f+ar ++ +++ +gy s p+++va g++ +++++l+aGPk +++++++ +gL+++vDyG l+ i+k lf 
     EGE23470.1 257 WVAIVQHYFVSAWTPS-NSFEADFFARTTG-KDFYIGYNS-PVINVASGKQITLNSTLYAGPKVQSEMASVaEGLNQTVDYGLLWPISKVLFA 346
                    ***************9.66799*******8.69******6.*****************************99*******************96 PP

>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.3  12.4   3.6e-62   1.6e-58       1     166 []     358     536 ..     358     536 .. 0.92

  Alignments for each domain:
  == domain 1  score: 197.3 bits;  conditional E-value: 3.6e-62
    60KD_IMP   1 yglaIilltiivrlillpltlkqlkssakmqelqPelkeiqekykkdkqklqqemmklYkkegvnplaGclplLiqlpifialyrvlrslasf...... 93 
                 +g++Ii+lt+i++++l+ l++k+++s+akm++++P+l+++++k+ +d+++++qemm+lY++e+vnp+aGclp+Liq+pif++ly++l +  ++      
  EGE23470.1 358 WGWSIIVLTLIIKVALFWLSNKSYMSMAKMRAIAPKLQALKDKHGDDRMAMSQEMMQLYRDEKVNPMAGCLPILIQMPIFLGLYWMLVESVELrhapwi 456
                 9****************************************************************************************5533666889 PP

    60KD_IMP  94 .wikdLsapd....lpillavttflqqklsks..kkm.qkmmlyvmplmilffslsfpaglvlYwlvsnllsiaqqliink 166
                  wi+dLsa d    lpi++++t+f+qq+l+++    m  kmm  ++p+++++f+l fpaglvlYw+v+nl+s+  q+++nk
  EGE23470.1 457 gWITDLSAMDpwfiLPIFMGITMFVQQMLNPQptDPMqAKMM-KILPMIFVVFMLWFPAGLVLYWTVNNLFSMTHQHLVNK 536
                 9*******9999******************553323324555.9*********************************9986 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.099   4.5e+02      41      59 ..       5      34 ..       2     206 .. 0.73
   2 ?   10.4   0.3   8.3e-05      0.37      28     102 ..     345     418 ..     334     426 .. 0.77
   3 ?   -0.8   0.2      0.23   1.1e+03      23      43 ..     502     520 ..     468     541 .. 0.57

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.099
       Wzy_C 41 llllgilvgvilliilfv...........l 59
                l++l+i++++i++++l++           +
  EGE23470.1  5 LRILIIIAMLITAYLLILawrddyarkpvV 34
                556666666666666665445555555550 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 8.3e-05
       Wzy_C  28 vlliifykrripfllllgilvgvilliilfvlstnletlknitkafgkldkkkgkdksgssRlyiwkralplikd 102
                 ++++  +++ i   ++++i++ +i+ ++lf+ls++ +   +++ a+  + +   kdk g+ R+++ +++++l++d
  EGE23470.1 345 FAILDNINKVIGNWGWSIIVLTLIIKVALFWLSNKSYMSMAKMRAIAPKLQ-ALKDKHGDDRMAMSQEMMQLYRD 418
                 44444455555677999*999999999999998776655555566655555.9**************99999987 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.23
       Wzy_C  23 lvalivlliifykrripflll 43 
                 + +++v++++f+  ++  l++
  EGE23470.1 502 PMIFVVFMLWFPAGLV--LYW 520
                 3334444444444444..333 PP

>> DUF3989  Protein of unknown function (DUF3989)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.5      0.53   2.4e+03      25      37 ..       4      16 ..       1      22 [. 0.78
   2 ?    8.9   0.0   0.00027       1.2      28      64 ..     503     539 ..     493     546 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.53
     DUF3989 25 ekRlivvllllll 37
                  R+ +++++l+ 
  EGE23470.1  4 ILRILIIIAMLIT 16
                569*******986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00027
     DUF3989  28 livvllllllfallslYmtvssiydigredgerlqie 64 
                 +i v+ +l + a+l lY tv  ++ +  +   + ++e
  EGE23470.1 503 MIFVVFMLWFPAGLVLYWTVNNLFSMTHQHLVNKRVE 539
                 899********************99988776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3801.46
//
Query:       EGE23471.1  [L=106]
Description: hypothetical protein EA1_08954 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-26   91.5   1.6      3e-26   91.1   1.6    1.2  1  YidD      Putative membrane protein insertion efficiency fact


Domain annotation for each model (and alignments):
>> YidD  Putative membrane protein insertion efficiency factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   1.6   1.6e-30     3e-26       1      66 []       3      69 ..       3      69 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.6e-30
        YidD  1 kkllialirlYqkvispll.ksCrfyptCSeYaleaiekyGllkGlllalkRilrCnplskgGyDpv 66
                k++l++li++Y+++isp++ ++Cr+yptCS+Y  +ai  +G++kGl l+++Ri rC+p++  G+D v
  EGE23471.1  3 KNILLILIEIYRRWISPMMtPRCRYYPTCSAYSRQAIIWHGAIKGLRLSIWRIGRCHPWGGCGIDFV 69
                6899*************6669*******************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 858.31
//
Query:       EGE23472.1  [L=87]
Description: ribonuclease P protein component [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-15   56.3   0.4    3.5e-15   56.0   0.4    1.1  1  Ribonuclease_P  Ribonuclease P
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.17   11.9   0.0    1.2  1  DUF4128         Bacteriophage related domain of unknown funct


Domain annotation for each model (and alignments):
>> Ribonuclease_P  Ribonuclease P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.4   3.9e-19   3.5e-15      41     109 ..      11      77 ..       2      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 3.9e-19
  Ribonuclease_P  41 slrlGlsvskkvgk.AvvRNrikRllReafrlnkdelpagldlvviakkgaaeadfaelekelekllkkl 109
                     s+rlGl+++kk  k Av+RNr+kRl Re fr +++ +  ++d+vvi+k g       ++++e+++l++k+
      EGE23472.1  11 SARLGLAITKKKLKkAVDRNRLKRLCRENFRHRQASWV-AIDVVVIVKAG--YPREFDIATEVTELFNKI 77 
                     47************************************.*********98..777777888888887776 PP

>> DUF4128  Bacteriophage related domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05      0.17      56      99 ..      41      84 ..      29      87 .] 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
     DUF4128 56 drrrtGlfqvtvvtplgqgvaeadqiAdeiaalFpdglrlaegg 99
                ++r+ + + ++vv+ +  g  +  +iA+e+ +lF++  +l ++ 
  EGE23472.1 41 RHRQASWVAIDVVVIVKAGYPREFDIATEVTELFNKINKLYSDE 84
                567788899*************************9999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 751.82
//
Query:       EGE23548.1  [L=85]
Description: hypothetical protein EA1_08779 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 737.84
//
Query:       EGE23549.1  [L=51]
Description: hypothetical protein EA1_08784 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.081   13.0   0.0       0.11   12.6   0.0    1.2  1  Cro       Cro


Domain annotation for each model (and alignments):
>> Cro  Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     6e-06      0.11      21      44 ..      12      35 ..       9      41 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6e-06
                HHTS-HHHHHHHHHCT-EEEEEEE CS
         Cro 21 dlgvkqsaIsKAlkakRnIylivd 44
                +lg   +aI+ Al a+R I l+ +
  EGE23549.1 12 ALGLSFTAIANALDAHRAIQLTNK 35
                689999*************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 394.78
//
Query:       EGE23550.1  [L=308]
Description: chelated iron ABC transporter substrate binding protein AfeA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-79  266.5   1.2    2.5e-79  266.3   1.2    1.0  1  ZnuA      Zinc-uptake complex component A periplasmic


Domain annotation for each model (and alignments):
>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.3   1.2   1.4e-83   2.5e-79       1     255 [.      41     304 ..      41     305 .. 0.93

  Alignments for each domain:
  == domain 1  score: 266.3 bits;  conditional E-value: 1.4e-83
                 EEESSHHHHHHHHHHHGGGCEEEECS-TTSTTTT----HHHHHHHHHSSEEEESSTTTSGTHHHHHHHHTTCCCE.EEEETTTTCCSEBCSS....... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx....... RF
        ZnuA   1 VvattsplgdlvrqvaGdrvevtvLvppgadpHsyeptprdvrklaeAdllvynglelEtwldkllasssqatrv.evidlsegveeeeeee....... 91 
                 Vv+t+++++d++++vaG++++v++++++ga++H+yeptp+dv k+++Adl+++ngl+lE w++k+  ++s+   v +v+ +++g+++ + +e       
  EGE23550.1  41 VVTTFTVIADIAQNVAGEAADVQSITKAGAEIHEYEPTPQDVVKAQKADLILWNGLNLELWFEKFYHDTSN---VpAVV-VTQGITPINITEgaykdmp 135
                 9****************************************************************988874...43555.5667755555556666678 PP

                 ESTGGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHHHHTT-EEEEEESSSSS....HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxx RF
        ZnuA  92 DpHiWlspknaiamveniadaLveadpanadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgylarayglevagiagiste....aaq 186
                 +pH W+sp+na  +veni++aL++ dpan++ y++na++y +k++++da +r++l++ipe++r lvt++ af+yla++ygl+ a+++ i++e    ++q
  EGE23550.1 136 NPHAWMSPSNALIYVENIKNALIKQDPANQEVYTKNAEQYSAKIKAMDAPLRAKLSQIPENQRWLVTSEGAFSYLANDYGLKEAYLWPINAEqqgsPQQ 234
                 ***************************************************************************************9999999***** PP

                 HHHHHHHHHHTT-SEEEEETTS-THHHHHHHHHHT-EE.EEE-STSSSTSTTS.TTSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        ZnuA 187 iaalieeikeagvkaifveplaspklaetlaeeagvkv.atlysldslgdegs.aetYidmmranleslke 255
                 +++li+++++++++++f+e+++s+k a+++a+e+g+k  ++ly  dsl+++g   +tY+d++++ +++++ 
  EGE23550.1 235 VKSLIDTVRSNNIPVVFSESTISDKPAKQVAKETGAKYgGVLYV-DSLSEAGGpVPTYLDLLQTTVSTIAS 304
                 *************************************9455999.******9889************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2279.80
//
Query:       EGE23551.1  [L=301]
Description: chelated iron ABC transporter ATPase subunit AfeB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-30  104.6   0.0      1e-29  103.8   0.0    1.4  1  ABC_tran     ABC transporter
    9.4e-12   45.3   4.7      1e-07   32.1   0.1    2.5  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    5.3e-06   26.0   1.4      4e-05   23.2   1.4    2.0  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00022   20.9   0.2    0.00077   19.2   0.1    1.9  2  AAA_29       P-loop containing region of AAA domain
    0.00092   19.4   0.4     0.0078   16.4   0.4    2.2  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
     0.0038   17.2   0.2     0.0098   15.8   0.1    1.7  2  RsgA_GTPase  RsgA GTPase
     0.0062   16.9   0.0      0.014   15.8   0.0    1.7  2  AAA_16       AAA ATPase domain
     0.0068   16.2   0.2       0.11   12.2   0.0    2.2  2  AAA_15       AAA ATPase domain
  ------ inclusion threshold ------
      0.025   15.2   1.1        1.8    9.1   0.4    2.8  2  AAA_18       AAA domain
      0.046   13.8   0.2       0.09   12.9   0.2    1.7  1  MMR_HSR1     50S ribosome-binding GTPase
       0.13   11.8   0.4       0.69    9.4   0.1    2.0  2  AAA_7        P-loop containing dynein motor region
       0.13   12.7   1.4       0.42   11.1   0.2    2.1  2  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   6.8e-33     1e-29       2     136 ..      23     169 ..      22     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 6.8e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...................es 81 
                  +vsl+l+ g++ a+vG nG+GKStL+k+l+gl kp+ G+++l + ++++      ++ ++++pq ++++ +  v                      ++
  EGE23551.1  23 YDVSLHLQGGTTCALVGINGSGKSTLFKVLMGLIKPQTGHVKLCDLPITQ---ALKKNLVAYVPQSEEVDWQFPVSVLdvvmmgryghmnflrrpkpKD 118
                 589**************************************999999999...78888899*****666655543333559**************9999 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++i++a+s++++++l+++ +    s+LSgGqk+rv laral++++k+lllDEp+
  EGE23551.1 119 YQKIDEAMSRVQINHLANRQI----SELSGGQKKRVFLARALAQESKILLLDEPF 169
                 999******************....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.7   1.3e-05     0.019       3      22 ..      36      55 ..      35      76 .. 0.88
   2 !   32.1   0.1     7e-11     1e-07     220     299 ..     125     201 ..      82     204 .. 0.84
   3 ?   -2.6   0.0       2.5   3.7e+03     173     225 ..     225     277 ..     215     283 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +l+G NgsGKS+L++ l +l
  EGE23551.1 36 ALVGINGSGKSTLFKVLMGL 55
                69*************99665 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 7e-11
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                  +  +  ++  +++++elS G+k+  +l+ al++     ++ll+DEp +g + k  + +++ll+el+++g  ++++TH+ 
  EGE23551.1 125 AMSRVQINHLANRQISELSGGQKKRVFLARALAQES---KILLLDEPFTGVDVKTEKAIMDLLDELRQEGHLILISTHNL 201
                 788888999999*************88888888777...9****************************99999*****96 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.5
      AAA_21 173 adyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvfle 225
                 +++f++a++ + +++ +r+l+lv+  l+d +++  l  ++d+ ++ +++ ++ 
  EGE23551.1 225 KSTFTQANLEKVFGGVLRQLHLVGEDLHDDDDKRTLTILADDEIPAVFYGHHQ 277
                 56677777777888888888888888888777777777776666665555554 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.4   2.6e-08     4e-05      27     199 ..      35     200 ..      23     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.6e-08
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevse 125
                  a+vG NGSGKs l+  +   +G  +  +  + kl dl    ++ ++   a+v    ++ d +++++  +v++   + r g+ ++    k   ++++ e
  EGE23551.1  35 CALVGINGSGKSTLFKVL---MGLIKP-QTGHVKLCDLPIT-QALKKNLVAYVPQS-EEVDWQFPVSVLDVVM---MGRYGHMNFLRRPKPKDYQKIDE 124
                 589*************99...886555.6667778888665.67777778888774.6666666655555444...45566667777777777788888 PP

                 HHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 xxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 126 llesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                  +++++i+        +LSgG+k+ v la  +A    + + + llDe     D k  k++ +ll+e +++  +i is ++
  EGE23551.1 125 AMSRVQINHLanrqisELSGGQKKRVFLARALA----QESKILLLDEPFTGVDVKTEKAIMDLLDELRQEGHLILISTHN 200
                 88888886544444449*******888877766....66789***************************98888777554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   5.2e-07   0.00077      16      50 ..      24      60 ..      12      65 .. 0.77
   2 ?   -2.2   0.0       2.5   3.7e+03      31      38 ..     221     228 ..     208     232 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.2e-07
      AAA_29 16 tieidlkg..atlltGpsGsGKSTllDAiqalLvpak 50
                +++++l+g  ++ l+G +GsGKSTl+  ++ l+ p++
  EGE23551.1 24 DVSLHLQGgtTCALVGINGSGKSTLFKVLMGLIKPQT 60
                4556666667999************988888888876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
      AAA_29  31 sGsGKSTl 38 
                  Gs KST+
  EGE23551.1 221 MGSTKSTF 228
                 58889987 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   5.2e-06    0.0078      26      89 ..     135     185 ..     118     186 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.2e-06
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  +r++++lSGG+k     + la ala+   +        ++++LDE F ++D ++ +++++ll+
  EGE23551.1 135 ANRQISELSGGQK---KRVFLARALAQ---E-------SKILLLDEPFTGVDVKTEKAIMDLLD 185
                 679999*******...45555544443...3.......258********************997 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   6.6e-06    0.0098      88     131 ..      20      64 ..       4      67 .. 0.84
   2 ?   -2.5   0.0       2.7   4.1e+03      86      99 ..     176     189 ..     153     235 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.6e-06
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  ++l +++ +l++  t++lvG  G GKStL ++l++  + +tg+v+
   EGE23551.1  20 TALYDVSLHLQGgTTCALVGINGSGKSTLFKVLMGLIKPQTGHVK 64 
                  55667788899978999******************9999999886 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.7
                  THTTHHHHHHHCTT CS
  RsgA_GTPase  86 tkegleelkellkd 99 
                  t++++ +l ++l++
   EGE23551.1 176 TEKAIMDLLDELRQ 189
                  34444444333333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.5e-06     0.014      22     170 .]      30     196 ..      19     196 .. 0.66
   2 ?   -3.5   0.0       7.7   1.1e+04      83     148 ..     242     255 ..     223     272 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.5e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala............. 106
                 +++  + l+G  G+GKs+l + l+  ++ +     +g+ + +  +      ++qal++  l++ + +  e+ +++     l+ ++              
  EGE23551.1  30 QGGTTCALVGINGSGKSTLFKVLMGLIKPQ-----TGHVKLC--D----LpITQALKK-NLVAYVPQS-EEVDWQFPVSVLDVVMMgryghmnflrrpk 115
                 3447899*****************877777.....8999999..4....3399***66.999999988.332444333333333336666666666666 PP

      AAA_16 107 ......................avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrllesk.pllvv 170
                                       +++el+g +++r++ +  r+l   +++++ ++l+ + +  +d  + +++  Ll++l +  +l+++
  EGE23551.1 116 pkdyqkideamsrvqinhlanrQISELSGGQKKRVFLA--RAL---AQESK-ILLLDEPFTGVDVKTEKAIMDLLDELRQEgHLILI 196
                 66666666666688776666666666666666555544..333...44244.55555568888888888877777777764488776 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.7
      AAA_16  83 rqlldeaesaeleawrekleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwad 148
                 rql+                                                       +dl++ d
  EGE23551.1 242 RQLHLV----------------------------------------------------GEDLHDDD 255
                 333333....................................................33333222 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.2e-05      0.11      14      49 ..      22      58 ..      20     139 .. 0.83
   2 ?    1.9   0.0     0.098   1.5e+02     322     365 ..     158     200 ..     138     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.2e-05
      AAA_15 14 lkdveidlseelt.vliGkNnsGKSsilealdlFlnn 49
                l dv+++l+  +t  l+G N+sGKS++ ++l  +++ 
  EGE23551.1 22 LYDVSLHLQGGTTcALVGINGSGKSTLFKVLMGLIKP 58
                567888888885548*************999777665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.098
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 ++++ill++EP +    +  k +++ll el ++++  ++i+TH+
  EGE23551.1 158 QESKILLLDEPFTGVDVKTEKAIMDLLDELRQEGH-LILISTHN 200
                 4569999****99999******************8.9******8 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.4    0.0012       1.8       3      20 ..      37      54 ..      36     213 .. 0.78
   2 ?   -0.9   0.0       1.6   2.3e+03       7      52 ..     221     263 ..     220     292 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
      AAA_18  3 ltGtpGvGKttlakeLsk 20
                l G+ G+GK+tl k L  
  EGE23551.1 37 LVGINGSGKSTLFKVLMG 54
                78999*******999933 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.6
      AAA_18   7 pGvGKttlake.Lskrlgfgvnlrdvakenglllevdpealdeskrl 52 
                 +G+ K+t++++ L+k    g +lr+++  ++ l ++d++  +   +l
  EGE23551.1 221 MGSTKSTFTQAnLEKVF--GGVLRQLHLVGEDLHDDDDK--RTLTIL 263
                 56668888875244443..77777777766666666666..444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     6e-05      0.09       2      29 ..      35      63 ..      34     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6e-05
                EEEEESTTSSHHHHHHHHHTS.TEEESSS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge.kaivsdk 29
                +a+vG   +GKStL++ l+g  k ++++ 
  EGE23551.1 35 CALVGINGSGKSTLFKVLMGLiKPQTGHV 63
                79****************99655565555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00046      0.69      10      59 ..       9      58 ..       3      73 .. 0.80
   2 ?   -0.1   0.0      0.39   5.9e+02      11      54 ..     193     233 ..     187     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00046
       AAA_7 10 seilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldk 59
                ++i V  ++     y ++l+l+ +  + lvG  G+GK+++ k l+  +++
  EGE23551.1  9 DDISVRYNNGHTALYDVSLHLQGGTTCALVGINGSGKSTLFKVLMGLIKP 58
                56666666666677778999********************9998876665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.39
       AAA_7  11 eilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdll 54 
                  il+ t +   +  ++++++  ++ +l +G+t   K++ ++  l
  EGE23551.1 193 LILISTHNLGTVPEFCDQVIMINRTILAMGST---KSTFTQANL 233
                 57888888888999999999999999999998...777777655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00028      0.42      23      37 ..      36      50 ..      17      55 .. 0.76
   2 ?   -0.1   0.1      0.72   1.1e+03     118     153 ..     136     170 ..     107     198 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
      AAA_23 23 lItGpNGaGKTTild 37
                +++G NG+GK+T++ 
  EGE23551.1 36 ALVGINGSGKSTLFK 50
                699**********97 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.72
      AAA_23 118 eqfisellgskkiilnlilflgqerfeefelkdkke 153
                 +++isel g +k++  l   l+qe++  +++ +++ 
  EGE23551.1 136 NRQISELSGGQKKRVFLARALAQESKILLLD-EPFT 170
                 5678888888888888888888888533332.2322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.31s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2040.63
//
Query:       EGE23552.1  [L=280]
Description: chelated iron ABC transporter permease protein AfeC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-86  290.0  33.2    1.8e-86  289.9  33.2    1.0  1  ABC-3     ABC 3 transport family
      3e-08   33.1  29.1      3e-08   33.1  29.1    1.6  1  FecCD     FecCD transport family
  ------ inclusion threshold ------
        3.7    7.6   5.8        4.3    7.5   0.0    2.6  2  DUF1230   Conserved in the green lineage and diatoms 27


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.9  33.2     3e-90   1.8e-86       2     257 ..      11     265 ..      10     266 .. 0.99

  Alignments for each domain:
  == domain 1  score: 289.9 bits;  conditional E-value: 3e-90
       ABC-3   2 yeflqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvnlllgailvgliaavalellkrktklkedtaigivlsvflalglvl 100
                 ye++++a+  s lv+ +ca+l+++++l+++sl+gdalsHa++pGva+ay+lg +++lga+++g++aa+ + ++k+ tkl+ed++ig+++++f+algl++
  EGE23552.1  11 YEYMLKAIFLSSLVGGVCAFLSAYLMLKGWSLIGDALSHAVVPGVAIAYALGAPYALGAFFSGILAALSILWIKSVTKLREDAVIGFIFTTFFALGLFI 109
                 9************************************************************************************************** PP

       ABC-3 101 vslikkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLvialliiP 199
                 +sl++ ++ ++++++fGnil+i+++d+++++++ +++ll+ll+fwk+lll++fde +Ak+ gls k +kll++ l++++vv alq+vG+iLvia++i+P
  EGE23552.1 110 ISLNP-TAINVQEIIFGNILGIADTDMYQVTVVMVITLLILLIFWKDLLLVFFDEIQAKAVGLSSKYYKLLFFSLLSACVVSALQTVGAILVIAMVITP 207
                 *****.********************************************************************************************* PP

       ABC-3 200 aatArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllallv 257
                 +atA++lt+++++l+++A ++g+++  +G++lSy+ld atG++iv ++t+lf++a+l+
  EGE23552.1 208 GATAYQLTDKFRTLILIAGAIGVITGGFGVYLSYFLDGATGGIIVCLQTALFIIAFLF 265
                 *******************************************************987 PP

>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1  29.1     5e-12     3e-08     101     309 ..      63     263 ..      41     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 5e-12
       FecCD 101 falplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllark 199
                 + ++l af++++la+l +l++  + ++ +     ++G+++++++ al  +++ l n+ ++ +++ +++G++ g+  ++++ + v+++++ll+ll++ ++
  EGE23552.1  63 APYALGAFFSGILAALSILWIK-SVTKLR--EDAVIGFIFTTFF-ALGLFIISL-NP-TAINVQEIIFGNILGIADTDMYQVTVVMVITLLILLIFWKD 155
                 4567899999999999999999.333333..34578****9988.788888877.65.77789************************************ PP

       FecCD 200 ldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLiv.PhiarllvgadhrkllplsallGallllladllarlllsptelpvgiv 297
                 l l+ +++ +Ak++G++ + ++ll++ l ++++ +a   vG i  +++++ P    + + +++r+l+++++ +G++   +  +l+ +l   t    gi+
  EGE23552.1 156 LLLVFFDEIQAKAVGLSSKYYKLLFFSLLSACVVSALQTVGAILVIAMVItPGATAYQLTDKFRTLILIAGAIGVITGGFGVYLSYFLDGATG---GII 251
                 ***********************************************97626666666779*************9988888777777744444...666 PP

       FecCD 298 taliGapffiyl 309
                 + l  a+f i++
  EGE23552.1 252 VCLQTALFIIAF 263
                 666666666655 PP

>> DUF1230  Conserved in the green lineage and diatoms 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00071       4.3      59      99 ..      12      52 ..       4      54 .. 0.86
   2 ?    0.9   2.3     0.073   4.4e+02      29      81 ..     143     195 ..      84     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00071
     DUF1230 59 kellelllssalgalvlvalvllrlylgWsYvgdRLlsetv 99
                +++l++++ s+l++ v+++l +  +  gWs +gd L ++ v
  EGE23552.1 12 EYMLKAIFLSSLVGGVCAFLSAYLMLKGWSLIGDALSHAVV 52
                467888888888889999999999************99887 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.073
     DUF1230  29 saeylrrlllvwlvlllvvgpvaaasfspekellelllssalgalvlvalvll 81 
                 + ++l  l++   +ll+++  + a+++  +++  +ll+ s l+a+v+ al ++
  EGE23552.1 143 VITLLILLIFWKDLLLVFFDEIQAKAVGLSSKYYKLLFFSLLSACVVSALQTV 195
                 44444444444444455555999999999999999999999999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2044.22
//
Query:       EGE23553.1  [L=263]
Description: chelated iron ABC transporter permease protein AfeD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-84  283.7  35.0    1.5e-84  283.6  35.0    1.0  1  ABC-3     ABC 3 transport family
    3.7e-07   29.5  31.3    7.3e-07   28.5  31.2    1.5  1  FecCD     FecCD transport family
  ------ inclusion threshold ------
        2.4    8.2   4.6       0.78    9.8   0.3    2.3  3  DUF1664   Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.6  35.0   2.5e-88   1.5e-84       5     257 ..       1     252 [.       1     253 [. 0.99

  Alignments for each domain:
  == domain 1  score: 283.6 bits;  conditional E-value: 2.5e-88
       ABC-3   5 lqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvnlllgailvgliaavalellkrktklkedtaigivlsvflalglvlvsl 103
                 +q+al+ +++v+++call++++vl+++sl+gda+sHa +pGv++a++lg+++++ga+++g+++a a+++l+++t+lkedt++g+v+s ++alglv++++
  EGE23553.1   1 MQHALISAVAVAVICALLSCYIVLKGWSLMGDAISHAIFPGVVVAFWLGIPMTFGAFIAGVCCAGAVGYLQTHTRLKEDTLMGVVFSGMFALGLVIFHK 99 
                 89************************************************************************************************* PP

       ABC-3 104 ikkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLvialliiPaat 202
                 i+ s ++l++ LfGn+l+is++ +++++ ++a+++l+l+l++++lll++fd ++A+v+gls++ l++ ll+++++++vva+qavGviLvia+li P++t
  EGE23553.1 100 ID-SGQHLTHLLFGNLLGISRTLMYQTLGVSAIIFLILILKRRDLLLYCFDSHHAQVAGLSIQKLHYGLLIILSATIVVAMQAVGVILVIAMLISPGMT 197
                 **.************************************************************************************************ PP

       ABC-3 203 ArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllallv 257
                 A  l+++++++l++Ai+++++++v+G+++Sy+ld atGa+ivl+++l+fl a+++
  EGE23553.1 198 AFILCKRFDTMLLTAIISSCFTSVFGVIISYHLDSATGATIVLMQALVFLGAMIY 252
                 ****************************************************986 PP

>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5  31.2   1.2e-10   7.3e-07      94     307 ..      39     247 ..       6     252 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.2e-10
       FecCD  94 llgslslfalplaaflgallalllvllla.rkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvlllllll 191
                 + g   +f+l + + +ga++a +     +   +++++ +   L+G+++s +++    l+++  + ++ + +++ l+G+l g+s + ++  l ++++++l
  EGE23553.1  39 FPGVVVAFWLGIPMTFGAFIAGVCCAGAVgYLQTHTRLKEDTLMGVVFSGMFA--LGLVIFH-KIDSGQHLTHLLFGNLLGISRTLMYQTLGVSAIIFL 134
                 334444455555555555555444443332445777788889********995..3444444.6789******************************** PP

       FecCD 192 lllllarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGL.ivPhiarllvgadhrkllplsallGallllladllarlllsp 289
                 +l+l +r+l l+ ++   A+  G++++++ + ll++ ++ + va+ +vG+i  +++ i P +  +++ +++ ++l l+a++++++  +  +++ + l  
  EGE23553.1 135 ILILKRRDLLLYCFDSHHAQVAGLSIQKLHYGLLIILSATIVVAMQAVGVILVIAMlISPGMTAFILCKRFDTML-LTAIISSCFTSVFGVIISYHLD- 231
                 ******************************************************961567777766666666555.5666666665555555555443. PP

       FecCD 290 telpvgivtaliGapffi 307
                     +g+ + l+ a++f+
  EGE23553.1 232 --SATGATIVLMQALVFL 247
                 ..3446777777777666 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.3   0.00013      0.78       7      28 ..       8      29 ..       3      34 .. 0.88
   2 ?   -1.2   0.0      0.32   1.9e+03       6      20 ..      57      71 ..      54      86 .. 0.82
   3 ?   -3.0   0.1       1.2   7.2e+03       5      19 ..     239     253 ..     235     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
     DUF1664  7 ivpaavvgavgYgyvwwkGwkl 28
                +v++av+ a+  +y+  kGw+l
  EGE23553.1  8 AVAVAVICALLSCYIVLKGWSL 29
                5799*****************8 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.32
     DUF1664  6 livpaavvgavgYgy 20
                +i  +  +gavgY+ 
  EGE23553.1 57 FIAGVCCAGAVGYLQ 71
                56678899*****85 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.2
     DUF1664   5 slivpaavvgavgYg 19 
                 +l+ + + +ga+ Y 
  EGE23553.1 239 VLMQALVFLGAMIYD 253
                 677889999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1163  (0.064867); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2058.27
//
Query:       EGE23554.1  [L=406]
Description: tyrosyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-75  251.7   0.0    1.1e-74  251.4   0.0    1.1  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
    3.5e-07   29.8   0.1    6.5e-07   29.0   0.1    1.5  1  S4            S4 domain
     0.0011   18.7   0.7     0.0042   16.9   0.7    1.9  1  S4_2          S4 domain
  ------ inclusion threshold ------
      0.079   12.6   0.0       0.18   11.4   0.0    1.6  1  HTH_50        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.4   0.0   2.5e-78   1.1e-74       2     290 ..      33     317 ..      32     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 251.4 bits;  conditional E-value: 2.5e-78
                   HHS--EEEEEEETSSS.-BGGGHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT.-SSHHHHHHHHHHHHHH..HHHHHHHTCHTTTEEEEETHHHH CS
  tRNA-synt_1b   2 kerplrvysGidPTgk.lHlGylvplkklvelqkaghevffliaDlhAiigdps.kaeerklrkreevlena..ikaqlakgldpekaevvlqsewl 94 
                   k+rplr+++G+dPT+  lHlG++v+l+kl+++q+ ghev+fli+D +A igdps ++++r +++++ev +na  + +q+ k+ld +k+++v++s+w 
    EGE23554.1  33 KNRPLRIKLGMDPTAAdLHLGHTVVLNKLRHFQDLGHEVLFLIGDYTARIGDPSgRNATRPPLTEAEVKANAqtYAKQVFKILDKDKTKIVFNSDWF 129
                   589********************************************************************************************** PP

                   TTHHHHHHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHHSTTSS-EEEEET-B CS
  tRNA-synt_1b  95 ehlelaellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkkevfkkpegltvpll 191
                    +++  ++++  ++ ++++rml++++++kr++++++i ++ef+Ypl q++D+ +l+ad+++gG+DQ +n+ +gr l+ r+ k+    +++++t+p+l
    EGE23554.1 130 GKMSAGDMIQLASQ-ITVSRMLERDDFSKRYNSQTPIAIHEFLYPLVQGYDSIALDADVELGGTDQTFNLLMGRTLQGRYDKE----PQVCITMPIL 221
                   **********9999.******************88***********************************************9....********** PP

                   BSTTSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEE.ESSHHHHHHHHHCCCCHHHHHHHHHHHH CS
  tRNA-synt_1b 192 tgldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkp.kreaeellaeevtklvhggdlkkalaea 287
                   +gldG +KmSKS gn +I ++d    +  ++qk+++ +d  + ++++l+ + +++++++l   ++++  ++e++ +la e  +++h+++ +++++++
    EGE23554.1 222 EGLDGVQKMSKSLGN-YIGIND---PAGVMYQKILSMPDTLIARYFELLSFKPMSEVNALLDDMKNGRnPQEIKRILALELIERFHDKESADNAHKS 314
                   ***************.666665...56678999999***************************9999999**********************99987 PP

                   HHH CS
  tRNA-synt_1b 288 lne 290
                     +
    EGE23554.1 315 AGN 317
                   655 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1   1.5e-10   6.5e-07       5      48 .]     345     387 ..     343     387 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.5e-10
                 HHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4   5 kvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48 
                 +vl ++gla+   +A+++ + G V+V+G+vv+  s+ ++ g ++
  EGE23554.1 345 QVLNQAGLAKNSAQAKDMLSRGAVKVDGQVVD-GSFALEQGQTV 387
                 699*****************************.***99988765 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.7   9.3e-07    0.0042      10      43 ..     343     376 ..     335     395 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.3e-07
        S4_2  10 LgqlLKlaglvesGgeaKafiaegeVkvNGevet 43 
                 + q+L  agl+++ ++aK +++ g+Vkv+G+v +
  EGE23554.1 343 ITQVLNQAGLAKNSAQAKDMLSRGAVKVDGQVVD 376
                 5799***************************975 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     4e-05      0.18      30      48 ..      47      65 ..      45      65 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4e-05
      HTH_50 30 AkrLGvShtaianklrkYg 48
                A+ L++ ht ++nklr ++
  EGE23554.1 47 AADLHLGHTVVLNKLRHFQ 65
                899*************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2947.73
//
Query:       EGE23555.1  [L=411]
Description: anhydro-N-acetylmuramic acid kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-129  431.9   0.1   2.8e-129  431.4   0.1    1.2  1  AnmK      Anhydro-N-acetylmuramic acid kinase


Domain annotation for each model (and alignments):
>> AnmK  Anhydro-N-acetylmuramic acid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.4   0.1  1.5e-133  2.8e-129       2     363 ..      27     409 ..      26     411 .] 0.90

  Alignments for each domain:
  == domain 1  score: 431.4 bits;  conditional E-value: 1.5e-133
                 EEEEEE--TT-SEEEEEEEEESS......SEEEEEEEEEE--HHHHHHHHHTSS-.-BSHHHHHHHHHHH............HHHHHHHHHHHHHHHTT CS
        AnmK   2 lyiGlmsGtslDgvdivlvdlee.....akvellashlfpipedlreklldllqg.gaatlkalgeldqe............lgllfadavnellqkqe 82 
                 ++iG+msGtslDg+d+vl ++ e      +ve +ash++p+ edlr++ll l+++ g at  ++ e+d +             ++  a+++ ell k +
  EGE23555.1  27 YFIGMMSGTSLDGMDAVLCRFFEtddetCSVEVVASHSVPFTEDLRQALLSLTTPnGVATFIQTCEFDFQseldvygwasvyYATFAAQVALELLDKAN 125
                 89*****************986545555678999*****************99885556666655555332222222111114556689999******* PP

                 --GGGEEEEEE--EEEEEEGGG..TEEEEE--HHHHHHHHSS-EEE--HHHHHHTTS-S---HHHHHHHHHS-SSS-EEEEEESSEEEEEEE-TTS.-- CS
        AnmK  83 lkaeeiraigshGqtvrhepegevpftlqlgdanliaektgitvvaDfRrrDvaaGGqGaPLvpafheallaaenearavLniGGianvsvlapna.ev 180
                 ++++ + aig+hGqtvrh+p+    f+lql d+n++ae+tgi vv+DfRrrD+a+GGqGaPLvpafh+a+++++++++ vLn+GGian++vl  ++  +
  EGE23555.1 126 ISHDLVCAIGCHGQTVRHRPN--WSFSLQLLDPNILAEHTGIAVVSDFRRRDMAVGGQGAPLVPAFHQAIFGHDKQVKGVLNLGGIANITVLNHDKsTP 222
                 ********************5..69*******************************************************************9987258 PP

                 EEEEEEESSHHHHHHHHHHHS-SS-GGGHHHHCS---HHHHHHHHTSCCHH--SS----TTTSSHHHHHHHHTTSTT-..H.....HHHHHHHHHHHHH CS
        AnmK 181 lgfDtGPgnaLlDawiekergkayDkdgewaasGkvnkkLLaelladpyfalpaPkstGrelFnlawlekklakapea..al...peDvqatLveltav 274
                 +gfDtG +n L+Daw   ++++ yD+dg+waasG+v + LL+ ll++p+f++  PkstGre Fnl+wl++ +++ +++  +l   p+D+qatL+eltav
  EGE23555.1 223 IGFDTGVANLLMDAWNFLHTNTCYDQDGTWAASGQVIQPLLDILLSHPFFSQSPPKSTGREDFNLSWLDAMIDQLNSShpNLchtPADIQATLCELTAV 321
                 **********************************************************************999988764322678************** PP

                 HHHHHHHHH-TT--EEEEESGGGG-HHHHHHHHHHSTTSEEEEGGGGTS-GGGHHHHHHHHHHHHHHTT---S-HHHH--SS-----EE CS
        AnmK 275 tiadallkaqadaerllvcGGGaknpvlmarlaallpevevestdelgldsdavealaFawLaartlnglPgnlpsvtGakkavlLGai 363
                 + a +++++ ++   +lvcGGGakn+ lmarl+a+lp+ ++++t++ g++  ++e++aFawLa + + g  gn+p+vtGa+k+v+LG +
  EGE23555.1 322 SAAKQIRHFIKS-GTVLVCGGGAKNTHLMARLQAHLPNLSIKPTNDWGIEVTWIESVAFAWLARQNILGRHGNVPAVTGANKTVVLGQV 409
                 *******99885.99************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3038.98
//
Query:       EGE23621.1  [L=695]
Description: polynucleotide phosphorylase/polyadenylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-41  140.9   0.0      6e-20   72.1   0.0    2.5  2  RNase_PH      3' exoribonuclease family, domain 1
    6.5e-23   80.5   1.0    7.6e-14   51.5   0.0    2.5  2  RNase_PH_C    3' exoribonuclease family, domain 2
    3.6e-20   72.1   2.3    1.1e-19   70.5   2.3    1.9  1  S1            S1 RNA binding domain
    7.6e-20   71.2   0.6    2.3e-19   69.7   0.6    1.9  1  PNPase        Polyribonucleotide nucleotidyltransferase, RNA 
    3.1e-14   52.6   0.9    2.9e-12   46.2   0.6    2.7  2  KH_1          KH domain
    1.3e-05   24.9   0.2    4.5e-05   23.2   0.2    2.0  1  KH_2          KH domain
  ------ inclusion threshold ------
      0.023   14.5   0.1      0.058   13.2   0.1    1.7  1  SLS           Mitochondrial inner-membrane-bound regulator
      0.027   14.5   0.0       0.13   12.3   0.0    2.3  1  S1_2          S1 domain
      0.059   13.1   0.4       0.18   11.5   0.0    2.0  2  DUF3016       Protein of unknown function (DUF3016)
       0.12   13.1   0.4        3.2    8.5   0.1    3.0  3  Ribosomal_L6  Ribosomal protein L6


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   2.1e-21   3.8e-18       5     129 ..      16     140 ..      13     143 .. 0.91
   2 !   72.1   0.0   3.3e-23     6e-20       2     132 .]     326     458 ..     325     458 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 2.1e-21
                 EEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C........S...HHHHHHHHHHHHHHCCTC-CCGCCTC CS
    RNase_PH   5 lsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasger.....rregrpsdeeielsrlleralrpsillekkpks 98 
                 + +etg +++   S+++ +G ++vl++v +  e+ ++   ++++  l+v+++ +++asg++     +regr+s+ e+++srl++r +rp+++   +  +
  EGE23621.1  16 VVLETGRIARQANSVLVHMGGVSVLVAVVVRPEA-IAGQ-NFFP--LTVNYQEKMYASGKIpggygKREGRASEFETLTSRLIDRPIRPLFPEGYF--N 108
                 779***7777777*****************9998.5566.8999..********************999***********************7766..9 PP

                 EEEEEEEEEECCC.S-CHHHCHHHHHHHHHCT CS
    RNase_PH  99 tididitvlssdg.gslldalinaaslALada 129
                 +i++++tv+ssd  +    a++++as+ALa +
  EGE23621.1 109 EIQVTATVISSDKtQDADIAAMIGASAALAIS 140
                 *************778888999*******976 PP

  == domain 2  score: 72.1 bits;  conditional E-value: 3.3e-23
                 EEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEE....E-TCCG--CC....EEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-C CS
    RNase_PH   2 lRslsietgvlsqanGSaylelGdtkvlasvtgpiee....rpseerddae....galdveveyapfasgerrregrpsdeeielsrlleralrpsill 92 
                 +R+l+i+ gvl+  +GSa+++ G+t+ l++ t++++           d+      + ++++++++ ++ ge+ reg p+++ei   rl  r ++++++ 
  EGE23621.1 326 VRALDIQVGVLPYTHGSALFTRGETQALVVTTLGTTRdvnlV-----DTLAgtkqDHFMLHYNFPHYSVGETGREGAPKRREIGHGRLARRGVQAMLPA 419
                 69*********************************8844331.....2222344467****************************************** PP

                 CGCCTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  93 ekkpkstididitvlssdggslldalinaaslALadagip 132
                  ++  +ti+++ ++++s+g s  +a++++asl L+dag+p
  EGE23621.1 420 AERFPYTIRVVSEITESNG-SSSMASVCGASLSLMDAGVP 458
                 88888**************.******************99 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   4.2e-17   7.6e-14       1      62 [.     146     205 ..     146     209 .. 0.91
   2 !   27.3   0.2   1.6e-09   2.8e-06       1      66 [.     461     530 ..     461     531 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 4.2e-17
                 S--EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC.EEHHHHHHHHH CS
  RNase_PH_C   1 apviavtvgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsq.ldeetlleaie 62 
                 +p++a +vg++++++vl+pt+ E  + ++dl+l+vagtk+  +lm e +++ l+e+++l a+ 
  EGE23621.1 146 GPIGAARVGFINGEYVLNPTLAE--MKQSDLDLVVAGTKSA-VLMVESEAKeLSEDQMLGAVL 205
                 599********************..****************.8888888888******98875 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 1.6e-09
                 S--EEEEEEEETTE....EEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC..EEHHHHHHHHHHHHH CS
  RNase_PH_C   1 apviavtvgkvddq....fvlDptkeEedlsegdltlavagtkevvtlmkeggsq..ldeetlleaielAkk 66 
                 apv+++++g+v +     ++ D   +E++l+  d+++ vag+ + +t ++++ +   ++++ +++a++ A+ 
  EGE23621.1 461 APVAGIAMGLVKEGerfaVLSDILGDEDHLG--DMDFKVAGSVNGITALQMDIKIegITADIMEQALKQAHA 530
                 69*********87779***********9988..*********************99**************96 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   2.3   6.1e-23   1.1e-19       2      75 .]     621     692 ..     620     692 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 6.1e-23
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +e+g+v+eG+V +++++GafV ++ g +g+v++s++s++ rve+ ++ lk+G++vkv+v+++d+  r i l++k
  EGE23621.1 621 VEVGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDE-RVENVSDYLKEGQTVKVQVQDIDNRGR-IKLTMK 692
                 799************************************.***********************9977.999876 PP

>> PNPase  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.6   1.3e-22   2.3e-19       1      83 []     240     322 ..     240     322 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.3e-22
                 HHHHHHHTTTHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHH...HHSTTS-HHHHHHHHHHHHHHHHHHHHHHTS-TTTS-- CS
      PNPase   1 eleekvaelaeerisealtiteKqeRyaaldeikekvveafaaeleeedeedekeikeifkalekkvvRsrildegvRiDGRe 83 
                 el+ +++e +++++sea+tit Kq+Rya+lde+ ++++  +  e+ ++ +++ ++ike+f++l++++vR +il++++RiDGR+
  EGE23621.1 240 ELNTQLKEQFTAKVSEAYTITVKQDRYARLDELAAEALVLAGDETSDDYADKVAQIKELFETLKYRTVRDNILSGKPRIDGRD 322
                 578999********************************999988888779999*****************************6 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.6   1.6e-15   2.9e-12       3      65 ..     559     615 ..     557     616 .. 0.91
   2 ?    3.9   0.0     0.027        49      21      65 ..     630     669 ..     629     670 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 1.6e-15
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEE.SHHHHHHHHHHHH CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisG.speavekAkelie 65 
                 +i+++ ++++ +IGkgG++I+++ e+tga I+++       d+ +++i+G ++++  +A+ +ie
  EGE23621.1 559 TITINPEKIRDVIGKGGATIRQLTEDTGATIDID-------DNGTIRIFGtDKASTRAAITQIE 615
                 78999***************************76.......3569*****99999****99997 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.027
                 HHHHHHHHHT-EEEEESSTT...T.-EEEEEE.SHHHHHHHHHHHH CS
        KH_1  21 nIkeIreetgakIkvpksedegsderevtisG.speavekAkelie 65 
                 ++ +I +  ga +++  +     ++  v+is  s e+ve+  + ++
  EGE23621.1 630 TVARIVD-FGAFVTIL-PG----TDGLVHISQiSDERVENVSDYLK 669
                 5678888.9*****99.43....578*************9988775 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   2.5e-08   4.5e-05      15      68 ..     545     599 ..     524     604 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.5e-08
                 EEEEEEECCS.CEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEE CS
        KH_2  15 vskveIerta.nrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVkl 68 
                 +s+ eI+ +a n ++i+i  ++   vIGkgG++i++++++ +  i++  ++ +++
  EGE23621.1 545 TSRTEINAHApNYATITINPEKIRDVIGKGGATIRQLTEDTGATIDIDDNGTIRI 599
                 78999*99666********************************999888888776 PP

>> SLS  Mitochondrial inner-membrane-bound regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.2e-05     0.058      28      96 ..     551     626 ..     533     662 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
         SLS  28 e.......evklsprefflLltgngklLqnlsrihgakielnrsenklrit.Atkstaeyieasineilknittetv 96 
                 +       +++++p ++   +++ g  +++l+++ ga+i++  +++++ri  ++k++++++  +i+ i + +++ tv
  EGE23621.1 551 NahapnyaTITINPEKIRDVIGKGGATIRQLTEDTGATIDI-DDNGTIRIFgTDKASTRAAITQIEAITAEVEVGTV 626
                 1444444459999999999999*******************.569******66689999***********9998877 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.3e-05      0.13       1      37 [.     623     659 ..     623     691 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.3e-05
        S1_2   1 iGkintlkvlretdfgyfLqkdesgevlLpkkevpee 37 
                 +G++ + +v r+ dfg+f++   +++ l++ +++ +e
  EGE23621.1 623 VGTVYEGTVARIVDFGAFVTILPGTDGLVHISQISDE 659
                 69999***************************99854 PP

>> DUF3016  Protein of unknown function (DUF3016)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.9   3.4e+03       5      54 ..     213     261 ..     209     262 .. 0.72
   2 ?   11.5   0.0    0.0001      0.18      40      69 ..     662     691 ..     652     695 .] 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.9
     DUF3016   5 vefadpekfrDvkesnesrerarervlaeLeealeklaekaLpegqkLev 54 
                 v  ++ ++f  +   n ++e    ++ +eL++ l+++ ++ ++e ++++v
  EGE23621.1 213 VVIDNINTFAQAV-GNAKQEFVAPAINEELNTQLKEQFTAKVSEAYTITV 261
                 5555666677666.667777777888889999999998888888888776 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0001
     DUF3016  40 klaekaLpegqkLevevtDvdlAGdvepwr 69 
                 ++ + +L+egq+++v+v D+d  G+++ ++
  EGE23621.1 662 ENVSDYLKEGQTVKVQVQDIDNRGRIKLTM 691
                 567889******************998765 PP

>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.41   7.3e+02      42      64 ..     111     136 ..     103     138 .. 0.85
   2 ?   -3.6   0.0        10   1.8e+04      23      37 ..     248     262 ..     242     265 .. 0.73
   3 ?    8.5   0.1    0.0018       3.2       6      65 ..     559     617 ..     555     622 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.41
                   EEEEEECSESCHHHH...HHHHHHHH CS
  Ribosomal_L6  42 kvtvivvsgidkekv...Aligtvrs 64 
                   +vt +v+s ++ +++   A+ig + +
    EGE23621.1 111 QVTATVISSDKTQDAdiaAMIGASAA 136
                   68889999999999999****98876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 10
                   EEEEE-CTTSEEEEE CS
  Ribosomal_L6  23 eltreipegvtvevk 37 
                   + t++++e+ t++vk
    EGE23621.1 248 QFTAKVSEAYTITVK 262
                   567777888888877 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0018
                   EEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH.HHHHHHHHH CS
  Ribosomal_L6   6 rvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv.Aligtvrsl 65 
                   +++i+ ++++ v+G+ g   r++ e++  +++ +   +  i+++g+dk+   A i ++ ++
    EGE23621.1 559 TITINPEKIRDVIGKGGATIRQLTEDTGATIDID--DNGTIRIFGTDKASTrAAITQIEAI 617
                   7899999*****************9965555532..6678999*****9999888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4937.33
//
Query:       EGE23622.1  [L=88]
Description: 30S ribosomal protein S15 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-36  124.9   0.7    1.3e-36  124.6   0.7    1.0  1  Ribosomal_S15  Ribosomal protein S15


Domain annotation for each model (and alignments):
>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.7   7.4e-41   1.3e-36       3      81 .]       9      87 ..       7      87 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 7.4e-41
                   HHHHHHSSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCTST CS
  Ribosomal_S15  3 elikefqrhekDtGspevqiallterInnltehlkenkkDkhsrrgLlklvskRrkllkYLkrkdverYkklieklglr 81
                    +i+++qr e+DtGspevq+allt+rIn+l++h+k +k D+hsrrgL+++v++Rrkll+YLk kd +rY++li  lglr
     EGE23622.1  9 AVIAKYQRGENDTGSPEVQVALLTARINDLQDHFKAHKADHHSRRGLIRMVNQRRKLLDYLKGKDLNRYTDLIGSLGLR 87
                   569**************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 699.67
//
Query:       EGE23623.1  [L=217]
Description: Opa-like protein A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-30  105.6   4.6    1.9e-30  105.6   4.6    2.2  2  Opacity       Opacity family porin protein
    1.2e-15   58.1  14.0    1.6e-15   57.7  14.0    1.1  1  OMP_b-brl     Outer membrane protein beta-barrel domain
      4e-07   29.7   7.1    1.1e-06   28.3   7.0    1.7  1  Surface_Ag_2  Surface antigen
    1.4e-05   25.2   6.4      5e-05   23.4   5.8    2.0  1  OMP_b-brl_2   Outer membrane protein beta-barrel domain
      0.002   17.5   1.2      0.059   12.7   0.1    2.2  2  DUF3575       Protein of unknown function (DUF3575)
  ------ inclusion threshold ------
       0.02   14.9   0.6      0.048   13.6   0.0    1.8  2  DUF2490       Protein of unknown function (DUF2490)
      0.022   14.6   2.0      0.028   14.3   1.2    1.5  1  OmpW          OmpW family


Domain annotation for each model (and alignments):
>> Opacity  Opacity family porin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3      0.22   5.5e+02      88     107 ..       9      28 ..       2      63 .. 0.63
   2 !  105.6   4.6   7.5e-34   1.9e-30       2     132 .]      64     217 .]      60     217 .] 0.79

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.22
     Opacity  88 vlaGvkykltpnltldtgvr 107
                 vlaG + +   n+ ++ g+ 
  EGE23623.1   9 VLAGLSTAAAANVLVNNGYY 28 
                 66666666666666666653 PP

  == domain 2  score: 105.6 bits;  conditional E-value: 7.5e-34
     Opacity   2 Gykvgnlrlaadytryrkvnan..........rndnsaskvkgkllGlsviydfdtgskvkPyvGvrvasngakvsasaklpkkeaf.......asetr 83 
                 G + +  r a dyt+y+k+n++           + +s+ ++k ++lGls+iydfdt s + Py G+rv  n+ k + s+ ++   a        + e +
  EGE23623.1  64 GKDTDLARYALDYTNYGKINSSytyqpqtntnTSITSSGELKAQSLGLSAIYDFDTVSGFTPYAGARVGINQIKSTVSTVTTTAAAQsrtthsqKQENK 162
                 5566778*************9999999987655556778899999************************99888665544433333333333447889* PP

     Opacity  84 vGlGvlaGvkykltpnltldtgvrynrlGrl....eatrvk..tveaslGlrykf 132
                 vG+GvlaG++y+++p l++d+gv+yn+lG+     + +++k  +++a++Glr++f
  EGE23623.1 163 VGFGVLAGAQYAINPQLSVDAGVEYNYLGKYdkldTDSKLKahQYGAKVGLRHNF 217
                 *****************************98322323455411679******988 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7  14.0   6.2e-19   1.6e-15       2     177 ..       6     214 ..       5     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 6.2e-19
   OMP_b-brl   2 allllaalsaaaaaassf.ggfyvggglglskvkv........dgvgsds.....gfgfgvgagyef.........ndnvgvegglsysgdkdysgsgk 77 
                 ++ +la+ls+aaaa+     g+yv ++lg+s++++        d     +     g g+g++ g ++         +++  +  +++y+ + ++++s +
  EGE23623.1   6 LATVLAGLSTAAAANVLVnNGYYVQADLGYSNLEAkyndnrpnD-----NkledkGLGYGISFGKDTdlaryaldyTNYGKINSSYTYQPQTNTNTSIT 99 
                 57789999999888766668999999999998887555344332.....34555555555555554432444434355899999999999988888877 PP

   OMP_b-brl  78 tdikinllsvpvnagyafnlsdsvlpyggaGlgytkvevdvsgng...........asdsdtdfglglgaGveyaladnwslkaeYrytdlks....da 161
                 ++ + + +s+++ a y+f++   + py+ga +g ++ + +vs ++           + + +++ g+g+ aG++ya+++++s++a+ +y+ l++    d+
  EGE23623.1 100 SSGELKAQSLGLSAIYDFDTVSGFTPYAGARVGINQIKSTVSTVTttaaaqsrtthSQKQENKVGFGVLAGAQYAINPQLSVDAGVEYNYLGKydklDT 198
                 788899999*********987779****999998778888777778899999******************************77666655555555999 PP

   OMP_b-brl 162 dndlknntfqvgvgyr 177
                 d++lk+++  + vg r
  EGE23623.1 199 DSKLKAHQYGAKVGLR 214
                 999********99986 PP

>> Surface_Ag_2  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   7.0   4.4e-10   1.1e-06      81     223 ..      25     206 ..      22     217 .] 0.86

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 4.4e-10
  Surface_Ag_2  81 dgaRvelEvsYerfdvknegnaiks.........................dakkiaaltkdagalaraeekavvlkveaitsiSlmlNacYDilteg 152
                   +g  v+ + +Y+++++k ++n  ++                         d++++  ++   +   ++++++ +    ++ + Sl l a YD  t  
    EGE23623.1  25 NGYYVQADLGYSNLEAKYNDNRPNDnkledkglgygisfgkdtdlaryalDYTNYGKINSSYTYQPQTNTNTSITSSGELKAQSLGLSAIYDFDTV- 120
                   5677888999******96655555457788999999999999999999998888888888877788999999999*****************8665. PP

  Surface_Ag_2 153 ipvvPYvcaGvGadfvs.................vveainpKfayrgklGlsYaitpeislfaGafyhkvlgnefdeiplskistltg 223
                    +++PY++a vG + ++                  +++++ K+++ + +G  Yai+p+ s+ aG  y   + +++d++++ ++ ++ +
    EGE23623.1 121 SGFTPYAGARVGINQIKstvstvtttaaaqsrttHSQKQENKVGFGVLAGAQYAINPQLSVDAGVEYN--YLGKYDKLDTDSKLKAHQ 206
                   59*************999999*9999998888777788999*************************96..457899999888776655 PP

>> OMP_b-brl_2  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   5.8     2e-08     5e-05      43     174 ..      13     187 ..      10     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2e-08
  OMP_b-brl_2  43 fsvgvvveyrleegwglqpglgyssrgmefefeget.nne...............................................dkktkitstyl 92 
                  +s    +++ +++g+ +q++lgys+ + ++++++ + n +                                               +++++++ ++l
   EGE23623.1  13 LSTAAAANVLVNNGYYVQADLGYSNLEAKYNDNRPNdN-KledkglgygisfgkdtdlaryaldytnygkinssytyqpqtntntsiTSSGELKAQSL 109
                  5566667778899999*****************76533.13456677777777788888888899999999999999999999999************ PP

  OMP_b-brl_2  93 elPllakykikksnvrlflfaGpyfgylleskesgstsdvddgkakdasydsdklkkfdygltigagyeffkklglelryyy 174
                   l   +++ ++    ++  +aG ++g++  +++ ++ +++    +  ++++  + +k+++g+ +ga y ++++l ++++++y
   EGE23623.1 110 GLSAIYDFDTVS---GFTPYAGARVGINQIKSTVSTVTTTA-AAQSRTTHSQKQENKVGFGVLAGAQYAINPQLSVDAGVEY 187
                  *99999999999...************98776665543332.22667777899************************99988 PP

>> DUF3575  Protein of unknown function (DUF3575)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.2    0.0088        22      86     131 ..      34      75 ..      23     117 .. 0.69
   2 !   12.7   0.1   2.3e-05     0.059      99     149 ..     145     199 ..      81     214 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0088
     DUF3575  86 GlhalggqynvgglkklkdkryeGdlygaGisyGYqwvlskrwnle 131
                 G + l ++yn +   + +d++ e +++g Gis+G +  l++ ++l+
  EGE23623.1  34 GYSNLEAKYNDN---RPNDNKLEDKGLGYGISFGKDTDLAR-YALD 75 
                 334444445444...7899999************9988864.5555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.3e-05
     DUF3575  99 l.....kklkdkryeGdlygaGisyGYqwvlskrwnleasiGlGyarlkydkyece 149
                 +     +++ +++++ + +g+G+ +G q+ ++++++++a + + y+  kydk ++ 
  EGE23623.1 145 TtaaaqSRTTHSQKQENKVGFGVLAGAQYAINPQLSVDAGVEYNYLG-KYDKLDTD 199
                 2566667788899999*********************9877666553.56666443 PP

>> DUF2490  Protein of unknown function (DUF2490)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.55   1.4e+03      84      84 ..      62      62 ..      18     105 .. 0.54
   2 ?   13.6   0.0   1.9e-05     0.048      16      78 ..     142     207 ..     131     216 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.55
     DUF2490 84 k 84
                +
  EGE23623.1 62 S 62
                2 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.9e-05
     DUF2490  16 kwsvsleaqyRlrddlsefnqillr..pglgyklnkklsvslgyayeeekekkknntedriw.qqf 78 
                 ++  +++aq R++ + ++ n++ +   +g +y++n++lsv +g+ y+   + +k  t + ++ +q+
  EGE23623.1 142 TVTTTAAAQSRTTHSQKQENKVGFGvlAGAQYAINPQLSVDAGVEYNYLGKYDKLDTDSKLKaHQY 207
                 67778999*********99999888779*****************954444455445555555555 PP

>> OmpW  OmpW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.2   1.1e-05     0.028      85     162 ..     108     193 ..      83     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
                 -EEEEEEEETSTTSSEEEEEEE..EEEEEECCECCCHHC......TCCEEEE-SECEEEEEEEEEEECSSSEEEEEEEEEECTEEC CS
        OmpW  85 PptltlqYhgeasskvrPYvGa..Gvnyttffdeklgst......gltdlklkdslgaagqiGvDikvkddwllnldvkklflktk 162
                  + l++ Y +++ s++ PY Ga  G+n++++    +  t         + k ++++g  + +G  + ++ ++ + + v + +l   
  EGE23623.1 108 SLGLSAIYDFDTVSGFTPYAGArvGINQIKSTVSTVTTTaaaqsrTTHSQKQENKVGFGVLAGAQYAINPQLSVDAGVEYNYLGKY 193
                 556888899************555*****999999988877777667788999999999999999999999999999988776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 1785.41
//
Query:       EGE23624.1  [L=311]
Description: tRNA pseudouridine synthase B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-54  183.6   0.1    3.9e-54  183.1   0.1    1.2  1  TruB_N    TruB family pseudouridylate synthase (N terminal do
    2.4e-11   43.5   0.0    5.8e-11   42.3   0.0    1.7  1  TruB-C_2  Pseudouridine synthase II TruB, C-terminal
    1.3e-06   28.4   0.2    4.3e-06   26.8   0.3    1.9  2  TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
  ------ inclusion threshold ------
      0.027   14.2   0.0       0.13   12.1   0.0    2.1  2  TruB_C    tRNA Pseudouridine synthase II, C terminal
       0.04   14.0   0.1      0.097   12.8   0.1    1.6  1  DKCLD     DKCLD (NUC011) domain


Domain annotation for each model (and alignments):
>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1   0.1   1.1e-57   3.9e-54       3     149 .]      40     186 ..      38     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 1.1e-57
                 HTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE------------- CS
      TruB_N   3 llkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvkvn 101
                 l++ kk+GhtGtLDp+atG+L++++geaTk+++y l+adK+Y+a + lg++tdt D+ g+++++++v+++++++l+ +++++ G+++qvppmySA+k++
  EGE23624.1  40 LYDSKKAGHTGTLDPMATGLLPICFGEATKFAQYGLNADKSYVALLSLGVKTDTADRYGQVIQRTDVPSFNQQTLNGIANALIGKQMQVPPMYSALKKD 138
                 5788************************************************************99********************************* PP

                 --------------------EEEEEEEEEEEEEEEEEEEEEESTTTTH CS
      TruB_N 102 GkrlyelaregeeverkkrkvtiyelelleveepevelevecskGtYi 149
                 Gk+lye+ar ge ver +r++ i++l+l+++++ +++l v+cskGtY+
  EGE23624.1 139 GKKLYEYARLGEVVERDARPIIIHNLTLTKLDNTTIKLIVSCSKGTYV 186
                 ***********************************************8 PP

>> TruB-C_2  Pseudouridine synthase II TruB, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.6e-14   5.8e-11       1      58 []     248     310 ..     248     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 1.6e-14
    TruB-C_2   1 PeveLseesakrflqGQrvkl....aaglpaeg..lVRvydeegrFlGvGeitddgvlaPkRLv 58 
                 P ++L+ ++a+r+++GQr+ +    ++ l+ ++  lVR+y +++ F+G++e+ ++g+l+Pk Lv
  EGE23624.1 248 PMLRLTTDEAARIKMGQRLNVkdrlDSLLEFDDvlLVRLY-AQDIFIGLAEVSKSGRLQPKKLV 310
                 7799***************6644445555555559*****.*********************98 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.1   1.1e+04      21      36 ..     102     114 ..     101     122 .. 0.73
   2 !   26.8   0.3   1.2e-09   4.3e-06       1      62 [.     187     243 ..     187     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.1
                 EEEEETTEGG-..B-H CS
    TruB_C_2  21 RRtrvgpfdeedmvtl 36 
                  Rt v +f+++   tl
  EGE23624.1 102 QRTDVPSFNQQ---TL 114
                 59999999888...44 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHHHTTS-EEEEEEEEEEETTEGG-..B-HHHHHHHHHHHHT--HHHHHEEEGGGG CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpfdeedmvtledLedavllykedeeLdrlllPlesa 62 
                 R L +  +e L c +h+++L+Rt +g fd +d+++l +L+++ l    de L rl lP++++
  EGE23624.1 187 RVLGESVAEHLDCMGHLIALHRTCTGGFDVADAISLGELANSSL----DERLGRL-LPTDAM 243
                 556677889********************************888....8888775.466655 PP

>> TruB_C  tRNA Pseudouridine synthase II, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.65   2.3e+03      36      43 ..     201     208 ..     197     210 .. 0.82
   2 ?   12.1   0.0   3.6e-05      0.13       2      22 ..     248     268 ..     247     273 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.65
                 S-EEEEEE CS
      TruB_C  36 GrliALle 43 
                 G+liAL +
  EGE23624.1 201 GHLIALHR 208
                 9****965 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.6e-05
                 EEEE--HHHHHHHHTT---B- CS
      TruB_C   2 prrdvteaeArdlrhGrrLea 22 
                 p +++t++eA+++ +G+rL  
  EGE23624.1 248 PMLRLTTDEAARIKMGQRLNV 268
                 889****************86 PP

>> DKCLD  DKCLD (NUC011) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.7e-05     0.097      32      55 ..       3      26 ..       2      28 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
                G--HHHHHHTEEEEEEE-SSS-HH CS
       DKCLD 32 kRpieeyikyGvinLDKPsnPsSH 55
                +Rp ++ + +G+  LDKP+  sSH
  EGE23624.1  3 NRPTKKVVISGILLLDKPADISSH 26
                89********************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2704.85
//
Query:       EGE23625.1  [L=141]
Description: ribosome-binding factor A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-29  101.3   0.0    4.5e-29  101.0   0.0    1.1  1  RBFA      Ribosome-binding factor A


Domain annotation for each model (and alignments):
>> RBFA  Ribosome-binding factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0   2.5e-33   4.5e-29       1     104 [.       4     114 ..       4     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 2.5e-33
                 TCHHHHHHHHHHHHHHHHHCT-HCCTGHHCEEEEEEESTTSSEEEEEEEESS-HH.......HHHHHHHHHHHTHHHHHHHHHHHC-SSSG-EEEEESS CS
        RBFA   1 RqervaeliqrelseilqeelkdprlgklvtiteVkvsrDlskakVyvsvlgsee.......ekeevlkaLkkaagflrrelakrlklrktPeLkFvlD 92 
                 R +r+a++iqr l+ ++++e++dprl+ +vti++Vkvs+Dl +a Vyv++l+ ++       ++++ lk L+ aagflr+ela+++k r+tP+L+F++D
  EGE23625.1   4 RLQRLADQIQRTLAILIRDEINDPRLTGFVTISSVKVSPDLGYADVYVTILEPSQdggmnseAHAQSLKVLNTAAGFLRTELARTMKTRTTPRLRFHYD 102
                 779***********************88*********************9998334566555777779******************************* PP

                 STTTT--XXXXX CS
        RBFA  93 esleqakeiekl 104
                 e +++++++ +l
  EGE23625.1 103 EVTAHGNRMMSL 114
                 ********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1059.90
//
Query:       EGE23626.1  [L=282]
Description: hypothetical protein EA1_08322 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-28   98.6  15.1    4.1e-28   97.9  15.1    1.4  1  DUF2382   Domain of unknown function (DUF2382)
    2.3e-13   50.0   1.7    3.3e-13   49.5   0.6    1.8  2  PRC       PRC-barrel domain
  ------ inclusion threshold ------
      0.011   15.7   0.8      0.033   14.1   0.1    2.1  2  DUF3659   Protein of unknown function (DUF3659)


Domain annotation for each model (and alignments):
>> DUF2382  Domain of unknown function (DUF2382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9  15.1   6.8e-32   4.1e-28       1     111 []     143     252 ..     143     252 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 6.8e-32
     DUF2382   1 lklseErlrvgkervetGeVrvrkevvteeetveVpverEevvverepvdrevaaaeaareeeetievplyeErvvvekeavvvEeVrvrketveetet 99 
                 l+l eErl+v+k+r+ +G V+++k+vvtee+++eV +e+E++++er++vdr+++++ ++ ++++ti v+l++Er++v+k+++v+EeV+++k+++++tet
  EGE23626.1 143 LELLEERLTVNKDRIVAGIVSLGKYVVTEERRMEVDLEEEHAHIERTAVDRPTDRRIND-SGADTISVELEAERANVTKQTYVTEEVTLGKTSETRTET 240
                 6899*************************************************999998.*************************************** PP

     DUF2382 100 veetvrreeleV 111
                 + et++reel++
  EGE23626.1 241 ILETIQREELNI 252
                 *********986 PP

>> PRC  PRC-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.6   5.5e-17   3.3e-13       6      74 ..      23      88 ..      20      93 .. 0.89
   2 ?   -2.6   0.0         1   6.1e+03      62      73 ..     167     178 ..     153     192 .. 0.56

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 5.5e-17
                S---TT-EEEETTSSEEEEEEEEEEETTTTEEEEEEEEETTT.....-EEEEEGG.CEECCCTEEEETT CS
         PRC  6 asdliGkeVytedGeklGkVkDvvidekegrvralvvsvggflgigekevliPfdlavkigkdriivda 74
                + ++iGk+ y +  eklGkV+Dv+++ ++g++r+lvv+ gg+++  +kevl+P +    i++d ++ d+
  EGE23626.1 23 YYNPIGKTAYGIGQEKLGKVQDVLVEVDTGKIRYLVVDAGGWFF--SKEVLVPAG-LSCIVGDEVYFDS 88
                889****************************************9..*******99.7777777777666 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1
                 CEECCCTEEEET CS
         PRC  62 avkigkdriivd 73 
                  v ++++r+ vd
  EGE23626.1 167 YVVTEERRMEVD 178
                 333334444443 PP

>> DUF3659  Protein of unknown function (DUF3659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       0.4   2.4e+03      21      44 ..      45      65 ..      36      69 .. 0.56
   2 ?   14.1   0.1   5.6e-06     0.033      36      52 ..     250     266 ..     218     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.4
     DUF3659 21 vvGrvveGdlkkLaGkkvdedGni 44
                v+ +v  G++  L+   vd+ G +
  EGE23626.1 45 VLVEVDTGKIRYLV---VDAGGWF 65
                34444447777777...7777755 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 5.6e-06
     DUF3659  36 kkvdedGnivdedGnvi 52 
                   +d+ Gn+vd++Gnv+
  EGE23626.1 250 LNIDDLGNVVDKNGNVV 266
                 349************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2262.75
//
Query:       EGE23627.1  [L=168]
Description: hypothetical protein EA1_08327 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-18   64.8   6.1    1.1e-16   61.0   6.1    2.0  1  DUF2382   Domain of unknown function (DUF2382)


Domain annotation for each model (and alignments):
>> DUF2382  Domain of unknown function (DUF2382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   6.1   6.1e-21   1.1e-16       1     111 []      13     151 ..      13     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 6.1e-21
     DUF2382   1 lklseErlrvgkervetGeVrvrkevvteeetveVpverEevvverepvdrevaaaeaa............................reeeetievply 71 
                 l+l eEr++v+k+rv+tG+V ++k+++t+++++ +++++E++v++ ++ d+  a++e+                              + +  ie+ ly
  EGE23627.1  13 LELLEERAEVQKQRVNTGKVILSKKIHTRTVNIPITLTEEHLVITYQQDDASLATHEQLsndddlvniidntkathakitingqvrsLTPDTPIEMLLY 111
                 6899******************************************77766665555556778899*******************999999******** PP

     DUF2382  72 eErvvvekeavvvEeVrvrketveetetveetvrreeleV 111
                  E++ v+k+a+  E+++++++t ++++ ++ ++++e l++
  EGE23627.1 112 CETATVTKTAHAIEDIHLNTQTIQREHVFTTKLQKEVLDI 151
                 *************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1215.01
//
Query:       EGE23628.1  [L=912]
Description: translation initiation factor IF-2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-35  121.4   0.4      6e-35  119.5   0.4    2.1  1  IF-2         Translation-initiation factor 2
    1.1e-33  116.4   3.2    1.1e-33  116.4   3.2    3.2  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.4e-15   55.6   4.1    2.4e-11   43.3   0.6    2.7  2  IF2_N        Translation initiation factor IF-2, N-terminal r
    1.1e-09   38.3   2.3    1.8e-09   37.7   0.1    2.5  2  MMR_HSR1     50S ribosome-binding GTPase
      3e-06   27.4   7.9    9.4e-06   25.8   7.9    2.0  1  IF2_assoc    Bacterial translation initiation factor IF-2 ass
    0.00023   20.7   0.1     0.0011   18.6   0.1    2.1  1  FeoB_N       Ferrous iron transport protein B
     0.0011   18.6   0.0     0.0029   17.2   0.0    1.7  1  Ras          Ras family
     0.0039   16.7   0.1     0.0039   16.7   0.1    3.3  2  SRPRB        Signal recognition particle receptor beta subuni
     0.0092   16.4   8.9       0.01   16.2   0.2    4.4  4  GTP_EFTU_D2  Elongation factor Tu domain 2
  ------ inclusion threshold ------
      0.022   14.7   2.8       0.05   13.5   0.1    2.8  3  GTP_EFTU_D4  Elongation factor Tu domain 4
      0.025   14.8   0.0      0.072   13.3   0.0    1.8  1  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.026   14.3   0.0      0.083   12.6   0.0    1.9  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati


Domain annotation for each model (and alignments):
>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.4     4e-38     6e-35       2     105 .]     699     803 ..     698     803 .. 0.96

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 4e-38
                 CCHHHCCCSCS.SCCEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHHSTEEEEEESSSCTHHHHHCCCCCTSEEEEESSHHH CS
        IF-2   2 eelfeeikeeg.kelnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasasnaiiigFnvkvskkakklaekegvkirlynvIYk 99 
                 ++lfe++ + +  +ln+i+k+Dv GsleAl +aL++l+++evkv+vi+sgvGaitesDv la++s+a+++gFnv+++++ k++a++ g++ir+y+vIY 
  EGE23628.1 699 DTLFESMGSAEvATLNIILKTDVRGSLEALLNALDELSTDEVKVRVISSGVGAITESDVILAESSEAVLLGFNVRADNAGKRKADEAGIDIRYYSVIYG 797
                 5678888877789************************77************************************************************ PP

                 HHHHHH CS
        IF-2 100 liddvk 105
                 liddvk
  EGE23628.1 798 LIDDVK 803
                 ****97 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.6       3.9   5.9e+03      35      64 ..     202     231 ..     181     243 .. 0.57
   2 !  116.4   3.2   7.6e-37   1.1e-33       6     188 ..     418     572 ..     414     577 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.9
                 HHHHHHSTHCHSHHHHHHTSCSSCEEEEEE CS
    GTP_EFTU  35 ekaeeervlDtlkeErergiTiksaaisle 64 
                 +++ ee+ l ++++E +r    +++  +le
  EGE23628.1 202 AREAEEERLRQMEAETRRKAAEEAQKRTLE 231
                 222334556666666666666555555555 PP

  == domain 2  score: 116.4 bits;  conditional E-value: 7.6e-37
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdav 104
                 ++i+ghvDhGKt+L+d++ +++                   +  ++ giT ++ a ++   t++ li+++DtPGH+ F+   +rg++++D++vlvv+a+
  EGE23628.1 418 VTIMGHVDHGKTSLLDKIRTTK------------------VASGEAGGITQHIGAYHVT--TDRGLITFLDTPGHAAFTAMRSRGAQATDIVVLVVAAD 496
                 78****************9333..................3344578************..************************************** PP

                 TBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHH CS
    GTP_EFTU 105 eGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktlleal 188
                 +G++pqtee + +a++ g+p+iv+iNKmD+  a+ +++++e++ k         +++e+   ++p+v +Sa++g g+++lle++
  EGE23628.1 497 DGMMPQTEEAIDHARAAGTPLIVAINKMDKDTADPDRVINELSVKE--------VIPEEWGGDTPMVKVSAKSGMGIDELLEVI 572
                 ******************************************9333........3444433579******************98 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   5.3e-05     0.079       4      48 ..       3      46 ..       2      51 .. 0.91
   2 !   43.3   0.6   1.6e-14   2.4e-11       3      53 ..     338     386 ..     336     387 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.3e-05
       IF2_N  4 irVyeLAkeLgvkskevikkLfkelGievkshsssLDeetaelia 48
                ++V++LA+  +++ + ++k+L +++G +    ++ +++ +  +++
  EGE23628.1  3 KTVKQLAQTSKTTTETILKQL-ADAGLPSRGENDLVTDSEQDKLV 46
                89*******************.88****99999999999988876 PP

  == domain 2  score: 43.3 bits;  conditional E-value: 1.6e-14
       IF2_N   3 kirVyeLAkeLgvkskevikkLfkelGievkshsssLDeetaeliaeefgi 53 
                 +i  ++LA+++ vk+ evik L+k +G + +  s+s+D+ ta+l+ eefg+
  EGE23628.1 338 NIVLSDLAQKMAVKVREVIKSLMK-MGEM-VRESDSIDQMTAALVIEEFGH 386
                 56789*****************99.****.*******************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3       1.4   2.1e+03      24      86 ..      71     147 ..      59     186 .. 0.44
   2 !   37.7   0.1   1.2e-12   1.8e-09       2     114 .]     418     523 ..     417     523 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
                 EEESSSTTSSSSEEEEEEEETTEEEEEEECGGC..................SSHHHHHH.HHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  24 aivsdkpgtTrdinegrvklkgkeielvDtpGl..................iegaseek.glgkaflaleeadlillvvdas 86 
                 a+v+ + g+ +++n  r k      +++D p                    ++ a+e++  ++ + +a e+  + l  ++as
  EGE23628.1  71 AQVTGTSGKAKTVNVVRTK-----KVVYDKPDPakieakiaaqakaaeearLKAAEEKQaAERSKKEAAERQAATLAAMRAS 147
                 4444444444444444333.....3555555521212222222222222111222222222222222233344444444444 PP

  == domain 2  score: 37.7 bits;  conditional E-value: 1.2e-12
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeeleel 100
                 v i+G+   GK++L+ ++  +k+  ++  g T++i  ++v++++  i+++DtpG            ++    + +d+++lvv a  +++ p+ ee  + 
  EGE23628.1 418 VTIMGHVDHGKTSLLDKIRTTKVASGEAGGITQHIGAYHVTTDRGLITFLDTPG-HA----AFTAMRSRG-AQATDIVVLVVAAD-DGMMPQTEEAIDH 509
                 789**************************************9999*********.22....222222222.23479******877.7799999999999 PP

                 HHHTTSEEEEEEES CS
    MMR_HSR1 101 leeakkplilvlnk 114
                  + a+ pli+++nk
  EGE23628.1 510 ARAAGTPLIVAINK 523
                 999*********98 PP

>> IF2_assoc  Bacterial translation initiation factor IF-2 associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   7.9   6.3e-09   9.4e-06       1      38 [.      58      95 ..      58      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 6.3e-09
   IF2_assoc  1 pkklTLkRksvselrqsfshGrsKtVsVEVRKKRtyvk 38
                +++++Lk k++s+ ++++++G++KtV+V   KK +y k
  EGE23628.1 58 KSRISLKSKTTSTAQVTGTSGKAKTVNVVRTKKVVYDK 95
                79**********************************88 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   7.1e-07    0.0011       3     155 ..     418     571 ..     416     572 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.1e-07
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyLtlql 101
                 v+++G  + Gkt+l++++  +k   g   G+t      ++++++  ++++D PG  +++a+ +    a+d+++      +v  +d   + ++   +   
  EGE23628.1 418 VTIMGHVDHGKTSLLDKIRTTKVASGEAGGITQHIGAYHVTTDRGLITFLDTPGHAAFTAMRSRGAQATDIVV------LVVAADDGMMPQTEEAIDHA 510
                 7899*************************************999*************9998887777777664......44445556666777777888 PP

                 HHTTSSEEEEEETHHHHHHT.TEEE-HHHHHHHH......TS-EEEEBTTTTBTHHHHHHH CS
      FeoB_N 102 lelgvpvvlalnmideaekk.gieidlkkLsekL......gvpvvktsakkkegieellka 155
                    g+p+++a+n++d+ +++    i++ +++e +      ++p+vk+sak++ gi+ell+ 
  EGE23628.1 511 RAAGTPLIVAINKMDKDTADpDRVINELSVKEVIpeewggDTPMVKVSAKSGMGIDELLEV 571
                 999************876651566788777777755555559***************9975 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.9e-06    0.0029       3     156 ..     419     572 ..     417     577 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.9e-06
                 EEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrva 101
                  ++G    GKtsll +  + k  +     i   +++   +v   +  ++ +DT G   f+++r+   + ++ ++lv + ++      + +  e i +  
  EGE23628.1 419 TIMGHVDHGKTSLLDKIRTTKVASGEAGGI--TQHIGAYHVTTDRGLITFLDTPGHAAFTAMRSRGAQATDIVVLVVAADDG----MMPQTEEAIDHAR 511
                 5899999*********99999988877777..778888888888889999********************999999766654....3445555666666 PP

                 TTTSEEEEEEETTTGGG...G-SS-HHHHHHHH.HHHT..SEEEEEBTTTTCTHHHHHHHH CS
         Ras 102 eenvpivLvGnKvDlee...kravsteegeela.kelg..lkfletSAktnenveeafeel 156
                    +p+++  nK+D ++   +r++++ +++e+  +e+g  ++ +++SAk+ ++++e++e +
  EGE23628.1 512 AAGTPLIVAINKMDKDTadpDRVINELSVKEVIpEEWGgdTPMVKVSAKSGMGIDELLEVI 572
                 67899*********998889999999999998746666789***************98876 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   2.6       1.4     2e+03     121     165 ..     190     236 ..     188     249 .. 0.71
   2 !   16.7   0.1   2.6e-06    0.0039       4     135 ..     416     537 ..     413     544 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
                 -TTSTT---HHHHHHHHHHHHHHHH.H.CHHHHHH------T....T CS
       SRPRB 121 KqelflakspklikdaLEkElnkii.e.rrskalkeldeeedksavl 165
                 K+e+++ k+++  ++a E+ l ++  e rr++a +++  + ++  ++
  EGE23628.1 190 KKESATDKKAREAREAEEERLRQMEaEtRRKAAEEAQKRTLEQMKQM 236
                 8999999999999*999999999853414555555555555555554 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.6e-06
                 -EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHH CS
       SRPRB   4 pavllvGlsdsGKTslftrLttdsvkktvtSq..essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAElly 100
                 p v ++G  d GKTsl+ ++ t +v +  +    +   a++v+++    +t++D PGh  +    +      +++  +v +v  ++d+  + ++ E + 
  EGE23628.1 416 PVVTIMGHVDHGKTSLLDKIRTTKVASGEAGGitQHIGAYHVTTD-RGLITFLDTPGHAAFTAMRSRG----AQATDIVVLV-VAADDGMMPQTEEAI- 507
                 7799****************9999988887653445556777554.5568999*****9987644444....4444444333.345555555565532. PP

                 HHHHHHHHHTT---EEEEEE-TTSTT---HHHHHH CS
       SRPRB 101 eilliteklkdavdiliACnKqelflakspklikd 135
                     +   +  + ++++A nK +  +a ++++i +
  EGE23628.1 508 ----D-HARAAGTPLIVAINKMDKDTADPDRVINE 537
                 ....2.23445667777777777777777777765 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       2.4   3.6e+03      13      47 ..     333     368 ..     321     383 .. 0.71
   2 ?   -0.9   0.1       1.5   2.2e+03      30      58 ..     562     594 ..     550     595 .. 0.77
   3 ?    2.4   0.1      0.14   2.2e+02       1      21 [.     603     623 ..     603     645 .. 0.83
   4 !   16.2   0.2   6.8e-06      0.01       2      61 ..     835     892 ..     834     902 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.4
                  EETTEEEEEECTCTTSEE...EEEEEEEEEEETEEESE CS
  GTP_EFTU_D2  13 lkkGdevrilgndtskke...ivtrissletfhedede 47 
                  +++G+++++  +d  +k     ++ i+sl ++ e ++e
   EGE23628.1 333 VEVGENIVL--SDLAQKMavkVREVIKSLMKMGEMVRE 368
                  567888888..555455455466677777776665555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
                  E....EEEEEEEEEEETEEESEEETTSEEEEEE CS
  GTP_EFTU_D2  30 e....ivtrissletfhededeavaganaGviv 58 
                  +    ++ ++ s++++  +++ +++ga+ Gv +
   EGE23628.1 562 GmgidELLEVISIQAELMELEAPIDGAAQGVVI 594
                  45566777899999999999999******9976 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.14
                  EEEEEEEEEESEEETTEEEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevri 21 
                  G va   v +Gtl+ Gd v  
   EGE23628.1 603 GAVASLLVKRGTLNQGDLVLA 623
                  7899999**********9976 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 6.8e-06
                  EEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEES CS
  GTP_EFTU_D2   2 tvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaik 61 
                    a++ v +Gt+ ++  +r+l+ +++  +   +  +sl + + d+ e+ ag  +G+ v++ 
   EGE23628.1 835 AAAGCMVQEGTIYRNKPIRVLRdDKVIFT---GHLQSLRRYKDDVNEVKAGMECGLAVKGY 892
                  568899**************887777666...*************************9984 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.1   1.6e+03      32      77 ..     553     602 ..     549     607 .. 0.74
   2 ?   -1.8   0.1       2.1   3.1e+03      20      60 ..     605     644 ..     592     652 .. 0.70
   3 ?   13.5   0.1   3.4e-05      0.05      12      80 ..     827     901 ..     820     906 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.1
                  TT-EEEETTE.EEE...EEEEEEETTEEESEEETT-EEEEEEESS-.TTT CS
  GTP_EFTU_D4  32 pgvklikedGrevG...eilqiqdkgkkleeakaGqevaisiegki.vGr 77 
                  p vk+  ++G+ +    e+ +iq +  +le    G+  ++ ie++   Gr
   EGE23628.1 553 PMVKVSAKSGMGIDellEVISIQAELMELEAPIDGAAQGVVIESRLdKGR 602
                  55666777776655111567899999999999999999999999886676 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.1
                  EEEEEEEEEEEETT-EEEETTE.EEEEEEEEEET.TEEESEE CS
  GTP_EFTU_D4  20 ivGvevlgGvikpgvklikedGrevGeilqiqdk.gkkleea 60 
                  +  + v  G+++ g  ++   G+  G+++++ d+ g+++++a
   EGE23628.1 605 VASLLVKRGTLNQGDLVL--AGEYYGKVRAMTDEnGQRIKTA 644
                  555667777777775553..5889999999987515666655 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 3.4e-05
                  EEETCC.CEEEEEEEEEEEEETT-EEEE.TTE.EE..EEEEEEEETTEEESEEETT-EEEEEEES.S-.TTTS-- CS
  GTP_EFTU_D4  12 vfrrsd.paivGvevlgGvikpgvklik.edGrev..GeilqiqdkgkkleeakaGqevaisieg.ki.vGrqik 80 
                  vfr+s+  a  G  v +G+i+ + ++   +d + +  G+++++++ ++ ++e+kaG+e +++++g ++ vG +i+
   EGE23628.1 827 VFRSSKfGAAAGCMVQEGTIYRNKPIRVlRDDKVIftGHLQSLRRYKDDVNEVKAGMECGLAVKGyEVaVGDKIE 901
                  6777664688999*******98877643133333355***************************94568999997 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.8e-05     0.072       2     120 .]     418     526 ..     417     526 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.8e-05
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlk 100
                 v ++G    GKtsll+++ + k+ + e   i   +   +vt      +d    +  + + Dt G+  f ++++   ++ ++++lv+ +++    ++  +
  EGE23628.1 418 VTIMGHVDHGKTSLLDKIRTTKVASGEAGGITQHIGAYHVT------TD----RGLITFLDTPGHAAFTAMRSRGAQATDIVVLVVAADDGMMPQT-EE 505
                 578999*************9999988876666655555442......22....345889*******************999999997654433222.23 PP

                 HH.HHHCSSS-EEEEEE-TTT CS
         Roc 101 el.kkvagkspvilvgnkiDl 120
                  + +++a  +p+i+ +nk+D+
  EGE23628.1 506 AIdHARAAGTPLIVAINKMDK 526
                 3313455668999999*9995 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.6e-05     0.083       4     141 ..     418     572 ..     416     574 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.6e-05
   PduV-EutP   4 illiGkvgsGKttLtqalkgeelkYkk....tqaiefsde........viDtPGeylenrklysalivt.saeadvialvqdateeesvfppg...fas 86 
                 + ++G+v+ GKt+L  +++  ++        tq i  ++         ++DtPG         +a+++  +  +d+++lv++a++ +   +++    a+
  EGE23628.1 418 VTIMGHVDHGKTSLLDKIRTTKVASGEaggiTQHIGAYHVttdrglitFLDTPGH-----AAFTAMRSRgAQATDIVVLVVAADDGMMPQTEEaidHAR 511
                 678*****************88765433333788877665111111114677774.....334555555155569999999999877766654111567 PP

   PduV-EutP  87 vfnkeviGiitkidlae.deenie...aveelL.ksa.Gaekifevsavekegieellkyl 141
                     ++i  i k+d+ + d +++     v+e + ++  G + + +vsa +  gi+ell+++
  EGE23628.1 512 AAGTPLIVAINKMDKDTaDPDRVInelSVKEVIpEEWgGDTPMVKVSAKSGMGIDELLEVI 572
                 78899********98641444443122345555333415556699**********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2351  (0.131128); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.07u 0.32s 00:00:01.39 Elapsed: 00:00:00.47
# Mc/sec: 5823.80
//
Query:       EGE23629.1  [L=493]
Description: transcription elongation factor NusA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-32  111.5   4.9    3.1e-32  111.5   4.9    2.1  2  NusA_N    NusA N-terminal domain
    5.6e-27   93.6   0.1    4.4e-25   87.6   0.1    2.7  2  KH_5      NusA-like KH domain
    1.4e-08   35.2   3.6    0.00025   21.6   0.3    3.4  3  HHH_5     Helix-hairpin-helix domain
     0.0012   18.6   0.1       0.28   11.0   0.1    3.0  2  KH_1      KH domain
     0.0028   17.4   0.7       0.17   11.7   0.0    3.3  3  KH_2      KH domain
  ------ inclusion threshold ------
      0.053   13.9   0.0       0.15   12.4   0.0    1.9  1  S1        S1 RNA binding domain


Domain annotation for each model (and alignments):
>> NusA_N  NusA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   4.9     1e-35   3.1e-32       1     120 [.       4     126 ..       4     127 .. 0.92
   2 ?   -1.2   0.2      0.86   2.6e+03      83      90 ..     416     423 ..     340     472 .. 0.64

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 1e-35
                 .CHCCCCCCCCCS---HHHHHHHHHHHHHHHHHCC.T-SSS-..EEEEE-TTT--EEEEEEEEEE..SS-S-TTTEEEHHHHHCCSTT--TTBEEEEE- CS
      NusA_N   1 EllealeelakekgiskevviealeeaLakaykkn.ygeden..veveidretgeikvyskktVv..eevedpekeIsleeakkidpkikvGdtveeev 94 
                 E+l+++e++++ekg+++e ++ea+e+aL+  +kk+ y e+ +  ++v+idr+tg++++++++tVv  e+ e p  + ++++    + + ++Gd+ ee++
  EGE23629.1   4 EILTVVETVSNEKGLNPEDIFEAIEQALVVSTKKKvYTEQPEvaIRVHIDRKTGNYDTFRYWTVVadEDHEMPACQLAISDLD--ENEWQIGDVKEEQI 100
                 89********************************9666663348*********************876778889999999997..47789********* PP

                 ---SSCCHCHHHHHHHHHHHHHHHCC CS
      NusA_N  95 tpkdfgriaaqtakqvivqkireaer 120
                 ++ +fgriaa++akqvi+qkireaer
  EGE23629.1 101 ESIEFGRIAATQAKQVIIQKIREAER 126
                 99***********************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.86
                 T--TTBEE CS
      NusA_N  83 kikvGdtv 90 
                 ++ + d++
  EGE23629.1 416 EVIISDEI 423
                 22222222 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.1   1.5e-28   4.4e-25       1      65 [.     233     297 ..     233     300 .. 0.97
   2 ?    3.0   0.0     0.036   1.1e+02      12      49 ..     314     347 ..     304     354 .. 0.83

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 1.5e-28
        KH_5   1 aGertkvaVkshnpnvdpvGaivgkkGsrikavsseLkgekidvvewseDlaefianalsPaevl 65 
                 +G r+k+ Vk ++ ++dpvGa++g++G+ri+av +eL+ge+idv+ w+eD+a++i +al Pa+v+
  EGE23629.1 233 PGLRAKISVKTNDHRIDPVGACIGMRGTRIQAVQQELDGERIDVIVWNEDPAQYIISALEPADVI 297
                 689************************************************************97 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.036
        KH_5  12 hnpnvdpvGaivgkkGsrikavsseLkgekidvvewse 49 
                 +n   d+++ ++g +G++++ + seL g k   + +se
  EGE23629.1 314 TN---DQLARAIGSQGQNVR-LASELTGYKLNMILESE 347
                 45...8999**********8.78899999999888776 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.7   8.2e+03      35      43 ..     227     235 ..     213     244 .. 0.58
   2 !   12.8   0.1   4.6e-05      0.14      14      57 .]     373     416 ..     369     416 .. 0.92
   3 !   21.6   0.3   8.2e-08   0.00025       2      56 ..     434     488 ..     433     489 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.7
                 HHHHTSTTS CS
       HHH_5  35 eeLakipGi 43 
                  ++a++pG+
  EGE23629.1 227 RDVARLPGL 235
                 345555554 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.6e-05
                 HHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHHH CS
       HHH_5  14 tAlallsaGiesvedlaaadveeLakipGiGkktAeriilelkd 57 
                 +A  l++ G+  +e +a a vee+ +i G+  +t   i + +k+
  EGE23629.1 373 LAEVLAEVGFADIETVAYAPVEEFYEIDGLDDETITAIQERAKE 416
                 67778999*******************************99986 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 8.2e-08
                 HHHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5   2 eeLlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilelk 56 
                  eLl ++ + p++A +l++  i +++dla++++ ++ +i G+    A + i++++
  EGE23629.1 434 AELLALEDMTPAIAYKLAERDIITLDDLAEQAIFDIEDIEGLNSQSAGKFIMAAR 488
                 589**********************************************999998 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   9.3e-05      0.28      10      40 ..     246     282 ..     236     297 .. 0.76
   2 ?    4.3   0.0     0.012        37       7      36 ..     314     343 ..     307     360 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.3e-05
                 H....HHHHHTGGGHHHHHHHHHH.T-EEEEES.STT CS
        KH_1  10 l....vgriIGkgGsnIkeIreet.gakIkvpk.sed 40 
                 +    vg+ IG +G +I+  ++e  g +I+v+  +ed
  EGE23629.1 246 HridpVGACIGMRGTRIQAVQQELdGERIDVIVwNED 282
                 2555599****************99*****9944443 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.012
                 GGGHHHHHHTGGGHHHHHHHHHHT-EEEEE CS
        KH_1   7 PsslvgriIGkgGsnIkeIreetgakIkvp 36 
                  +++  r IG +G+n++   e tg k +++
  EGE23629.1 314 TNDQLARAIGSQGQNVRLASELTGYKLNMI 343
                 56788899*********9999999998877 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.7   8.1e+03      30      40 ..      38      48 ..      24      53 .. 0.67
   2 ?    2.2   0.1     0.052   1.6e+02      37      54 ..     252     269 ..     236     277 .. 0.91
   3 !   11.7   0.0   5.8e-05      0.17      18      65 ..     299     347 ..     285     371 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.7
                EEEESCHHHHH CS
        KH_2 30 viresqpgivI 40
                 ++++qp ++I
  EGE23629.1 38 KVYTEQPEVAI 48
                56666666665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.052
                 HHHHTGGGHHHHHHHHHH CS
        KH_2  37 givIGkgGsnikkigkel 54 
                 g  IG +G +i+++++el
  EGE23629.1 252 GACIGMRGTRIQAVQQEL 269
                 778*************98 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 5.8e-05
                 EEEEC.CSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTC CS
        KH_2  18 veIer.tanrviiviresqpgivIGkgGsnikkigkelrkdieklegkk 65 
                 +++++ ++ + +i+ ++ q +++IG +G+n++   +  ++++  +++++
  EGE23629.1 299 LVLDEdAKTAEVIFATNDQLARAIGSQGQNVRLASELTGYKLNMILESE 347
                 555552447888999999***********************99888776 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     5e-05      0.15       3      72 ..     136     198 ..     134     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEE CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriil 72 
                 ++g+ ++Ge+++ ++++ +V+lg+g eg++ + +         p e+l+v+ +v + + +v++d r+++l
  EGE23629.1 136 RIGDLISGEIKKQSRDAYIVDLGEGGEGYLAKDQTL-------PRETLRVKSRVSAILSQVNRDGRSPQL 198
                 689**************************9887655.......667999999999988888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3405.45
//
Query:       EGE23630.1  [L=165]
Description: hypothetical protein EA1_08342 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-22   78.9   0.0    4.3e-22   78.3   0.0    1.3  1  DUF150    RimP N-terminal domain
    1.5e-06   28.2   0.1    6.6e-06   26.2   0.1    2.0  2  DUF150_C  RimP C-terminal SH3 domain


Domain annotation for each model (and alignments):
>> DUF150  RimP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   4.8e-26   4.3e-22       1      73 []      13      92 ..      13      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 4.8e-26
      DUF150  1 liepvveslglelvdvelskegrgrvlriyid......kdgg.vtlddcekvSraisalLdvedpieeeYtLEVsSPGld 73
                li+p+v++ g++l+++e+  +gr++ lriyi+        g  vt++dc +v +++s +Ldv dpi +eY LEVsSPG d
  EGE23630.1 13 LIAPAVAACGVDLWGIEFMPQGRKSLLRIYIEslpenrAAGEhVTIEDCSAVNHQVSGVLDVHDPIAGEYVLEVSSPGFD 92
                699*****************************99998534446***********************************86 PP

>> DUF150_C  RimP C-terminal SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.19   1.7e+03       9      23 ..      50      64 ..      49      69 .. 0.71
   2 !   26.2   0.1   7.4e-10   6.6e-06       1      69 [.      95     164 ..      95     165 .] 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.19
    DUF150_C  9 rflGelVkvklklpv 23
                r++Ge V+++ +++v
  EGE23630.1 50 RAAGEHVTIEDCSAV 64
                778888888766655 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 7.4e-10
    DUF150_C   1 LktaedFarflGelVkvklklpv....egrkkftGkivevdeetitlevdgkkrkkettipladidkArlvpe 69 
                 L+t e+ a ++Ge++ ++l +++     +r+k++G++  v e++ t++ ++k    e++i ++ +dkA lv e
  EGE23630.1  95 LFTREQVAAYVGETINLRLIHAIgsgdTKRRKVVGRLTCVGEDSMTVITEDK---LEFNIAFDSVDKAHLVYE 164
                 899999999**********99994444589**************99998888...7999***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1296.01
//
Query:       EGE23631.1  [L=100]
Description: preprotein translocase subunit SecG [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-21   74.3   9.8    7.3e-21   74.0   9.8    1.1  1  SecG            Preprotein translocase SecG subunit
  ------ inclusion threshold ------
      0.032   14.1   5.4      0.045   13.6   5.4    1.2  1  DUF4013         Protein of unknown function (DUF4013)
        1.9    7.4   4.7        1.2    8.1   2.8    1.6  2  SHR3_chaperone  ER membrane protein SH3


Domain annotation for each model (and alignments):
>> SecG  Preprotein translocase SecG subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   9.8   1.2e-24   7.3e-21       1      68 [.       4      71 ..       4      73 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.2e-24
                HHHHHHHHHHHHHHHHHHHCHHCCSCCHHTT...SS-SS--SSCCCHHCCHHHHHHHHHHHHHHHHHH CS
        SecG  1 illillvivsilLillvLlQsgkgaglsgafgggasdslfgsrgaekfLtkiTvilavlFfvlslvla 68
                ill +++i++i++++++L+Q+gkga+++++fg+ga++++fg+ g+++fLt++T++la++Ff++sl+la
  EGE23631.1  4 ILLAIHIIIAIVMVGFILIQHGKGADAGASFGSGAAGTVFGAAGSANFLTRTTAVLATIFFATSLALA 71
                799****************************6665678****************************97 PP

>> DUF4013  Protein of unknown function (DUF4013)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   5.4   7.5e-06     0.045      52     122 ..       7      76 ..       1      81 [. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.5e-06
     DUF4013  52 vvslvYlliplii...alltllvalaslaagdsaagallvlallglllalllvllllllfglllpvalarfart 122
                 ++ ++     +i+   ++l++ + +a + a++++++a++v++  g + +l+   ++l ++++++++ala+fa++
  EGE23631.1   7 AIHII----IAIVmvgFILIQHGKGADAGASFGSGAAGTVFGAAGSANFLTRTTAVLATIFFATSLALAHFAQK 76 
                 22222....22224566777888888888888888888888888888888867777777899999*******97 PP

>> SHR3_chaperone  ER membrane protein SH3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.8   0.00019       1.2     128     152 ..       2      26 ..       1      27 [. 0.90
   2 ?   -2.0   0.0      0.24   1.4e+03      14      19 ..      62      67 ..      49      82 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00019
  SHR3_chaperone 128 lkvlaasntilalvLvGVlvLQaGq 152
                     l +l a ++i+a+v+vG +++Q G+
      EGE23631.1   2 LTILLAIHIIIAIVMVGFILIQHGK 26 
                     5678899***************996 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.24
  SHR3_chaperone 14 tsFflG 19
                     +F   
      EGE23631.1 62 IFFATS 67
                    222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 739.68
//
Query:       EGE23632.1  [L=250]
Description: triosephosphate isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-71  238.7   0.0    6.7e-71  238.5   0.0    1.0  1  TIM       Triosephosphate isomerase


Domain annotation for each model (and alignments):
>> TIM  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.5   0.0   3.7e-75   6.7e-71       2     243 .]       6     243 ..       5     243 .. 0.92

  Alignments for each domain:
  == domain 1  score: 238.5 bits;  conditional E-value: 3.7e-75
                 EEEEE-TBTS.-HHHHHHHHHHHHHHCHGCTSEEEEE--GGGHHHHHHHHTTSSECEEES--..BSSSSBS-TT--BHHHHHHTT-SEEEES-HHHHHH CS
         TIM   2 liagNwKmnk.tleeakellkklkaklkeekvevviappflylekvkklleesklklgaqnv..saeksGafTGevsaemlkdlgvkyviiGHsErrql 97 
                 +++gNwK+n  t++ a+el++ l+    + +v+v  +p+f+++++v+ +l+++ + +gaq++  ++++ Ga+TG+vsae+l+dlgv +viiGHsErr++
  EGE23632.1   6 CVIGNWKLNPaTKSAAHELAQGLSGIACD-AVRVGCTPSFTHVSTVAGVLAGTPIWVGAQDIcaYTQSTGAYTGDVSAEQLSDLGVGFVIIGHSERRNY 103
                 69*******83555556666667766655.9******************************73356778****************************** PP

                 ST--HHHHHHHHHHHHHTT-EEEEEE---HHHHHTT.HHHHHHHHHHHHTTTS-CCCGGCEEEEE--GGGSSSS----HHHHHHHHHHHHHHHHHHSTH CS
         TIM  98 fkEtdelvakKvkaalksglkpilCvGEtleereagkteevvkeqlkeilkkldeealknvviAYePvWAiGtgktatpeqaqevhaairkelaekvsk 196
                 ++E+++l+ +K+k+a +++l++++C+GEt+e++++++t +v+ +ql ++l++++     +++iAYeP+WAiGtg t +++++ ++ha+i+++la+    
  EGE23632.1 104 YREDHSLLVEKMKHAFAADLSVVFCIGETKEQYQDNQTLSVLDDQL-SVLQTFRVP-RGKLIIAYEPIWAIGTGLTPSTQEVIATHAHIKSVLASY--- 197
                 **********************************************.677877776.58**********************************876... PP

                 HHHTTSEEEEESS--TTTHHHHHTSTT--EEEESGGGCSHHHHHHHH CS
         TIM 197 evaekirilYGGsvnkenakellkqkdidGlLvGgaslkaesFlkii 243
                    e +++lYGGsvn++na+e+ + + +dG+LvGgaslk+++F++ii
  EGE23632.1 198 -HFEGVSVLYGGSVNEQNAAEFAQAEGVDGALVGGASLKLDTFAQII 243
                 .6899****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1866.49
//
Query:       EGE23633.1  [L=365]
Description: phospho-N-acetylmuramoyl-pentapeptide-transferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-28  100.3  16.4      1e-28  100.3  16.4    2.5  3  Glycos_transf_4  Glycosyl transferase family 4
    6.6e-06   25.4   0.6    6.6e-06   25.4   0.6    2.8  2  MraY_sig1        Phospho-N-acetylmuramoyl-pentapeptide-transf


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.21   1.9e+03      33      42 ..      24      33 ..      11      85 .. 0.53
   2 !  100.3  16.4   1.1e-32     1e-28       2     159 ..      93     289 ..      92     290 .. 0.88
   3 ?   -0.9   0.2      0.15   1.4e+03      45      73 ..     331     358 ..     297     362 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.21
  Glycos_transf_4 33 ilaalililt 42
                     ++++l+++++
       EGE23633.1 24 VITSLLIVII 33
                     2222222222 PP

  == domain 2  score: 100.3 bits;  conditional E-value: 1.1e-32
  Glycos_transf_4   2 llllltillilllGflDDv........lglkarlKlilqilaalililtld...........lslttlglllt......qvlielglilavllt 70 
                      ++l++++++++++G++DD         +gl ar K ++  + +l++ + ++           ++++++ ++l+        +i lg + +++ t
       EGE23633.1  93 WILMVVMVIFGAVGWADDWlkikhknpQGLIARKKYFWLSVGSLFAGCSMYyiaiqqdtntmIAMQDMLIPLFkdivipFSAIPLG-LGFIIAT 185
                      78899999**********8788888888***************9998877778877777666444444444444454444788888.788899* PP

  Glycos_transf_4  71 llvivgvtNavNliDGldGlaagvsiiialalvvla...............avdgrsellllalallgallGfllfNrypAkvFmGDsgslflG 149
                      ++v++g +NavNl+DGldGl +  ++++a+ l+v+a               +++ + e+ ++++a++ga lGfl++N+ pA vFmGD+g+l+lG
       EGE23633.1 186 YFVLAGSSNAVNLTDGLDGLVILPVVLVAAGLGVFAyisgsphfadymhvpYIAYNAEVTIVCAAMIGAGLGFLWYNAAPADVFMGDVGALSLG 279
                      ************************************************999999**************************************** PP

  Glycos_transf_4 150 lvlavlailg 159
                      ++l+++a+++
       EGE23633.1 280 GMLGTIAVMT 289
                      *******985 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.15
  Glycos_transf_4  45 lslttlgllltqvlielglilavlltllv 73 
                       ++++lgl+ t+v +   +i++++l++l 
       EGE23633.1 331 HHFEELGLKETKV-VARFYIVCIILVVLG 358
                      4555555555522.222224444444443 PP

>> MraY_sig1  Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.6   7.3e-10   6.6e-06       1      13 []      62      74 ..      62      74 .. 0.96
   2 ?    0.8   1.0     0.045   4.1e+02       7      11 ..     298     302 ..     298     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 7.3e-10
   MraY_sig1  1 KkGTPTMGGvlIi 13
                K GTPTMGGvlI+
  EGE23633.1 62 KQGTPTMGGVLIL 74
                99**********7 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.045
   MraY_sig1   7 MGGvl 11 
                 MGG++
  EGE23633.1 298 MGGIF 302
                 ****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.31s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2498.84
//
Query:       EGE23634.1  [L=494]
Description: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-41  142.3   0.0    9.3e-41  139.9   0.0    2.0  1  Mur_ligase_M  Mur ligase middle domain
    1.2e-11   44.7   0.9    6.4e-10   39.1   0.1    3.6  5  Mur_ligase_C  Mur ligase family, glutamate ligase domain
    8.7e-11   42.0   0.0    5.2e-10   39.5   0.0    2.2  2  Mur_ligase    Mur ligase family, catalytic domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9   0.0   1.6e-44   9.3e-41       2     191 ..     115     333 ..     114     334 .. 0.86

  Alignments for each domain:
  == domain 1  score: 139.9 bits;  conditional E-value: 1.6e-44
                   ESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHC.TTTCCHCBESEEEE---TSTTHHHHSSHHHHHHH CS
  Mur_ligase_M   2 TGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglge.krlegllkpdvavitnispdHldfhgtlenyaea 97 
                   TG++GKTTt+e+i ail++ + ++ t g++nn++g+p +l+e+++ e++++v+E+++++lge +  +++++pdva+i+ni+++Hl+++g + n+a a
    EGE23634.1 115 TGSSGKTTTKEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTD-EHRFLVIELGANHLGEiAYTASMVRPDVALILNIGTAHLGEFGGRANIACA 210
                   *********************************************.*****************99******************************** PP

                   HHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTS.........................ECEEEEEEEEETTEEEEEEEEE.... CS
  Mur_ligase_M  98 Kaelferlkeegiavinaddpyakelikklkkakvkvvtfglekea.........................edlraknieeksegteiellev.... 165
                   K+e+++ l+++g+a++   d+ + el k++++ +  +++fg+++                            dl a++ie +++ ++++l +     
    EGE23634.1 211 KSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGERAVPieqagleatdqamlkaegissvlmmGDLFADDIETFATHSTFTLNTNidid 307
                   ***************************9988876559999998877777666666666666666666666655555566665555555554325445 PP

                   TTEEEEEEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M 166 kggeleieipllGkhnvyNalaaiaa 191
                   + ++l +++p++G+hnv+Nalaa+ a
    EGE23634.1 308 QIDSLPVHLPFIGEHNVANALAAASA 333
                   667777*****************976 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.1   6.2e+02      22      77 ..      90     140 ..      76     147 .. 0.72
   2 ?   -3.3   0.0       1.9   1.1e+04      17      35 ..     165     184 ..     156     200 .. 0.55
   3 ?   -0.8   0.0      0.31   1.9e+03      28      61 ..     263     292 ..     259     296 .. 0.72
   4 !   39.1   0.1   1.1e-13   6.4e-10       2      81 ..     355     433 ..     354     443 .. 0.87
   5 ?   -1.9   0.0      0.72   4.3e+03      53      80 ..     450     475 ..     445     484 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.1
                   -SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEE CS
  Mur_ligase_C  22 hnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvv 77 
                   ++  +l ++ k+ r+  pd  +i++ g+ g     t    +++g+++s++a  l++
    EGE23634.1  90 DTKLALGNLGKFRRDAHPDLTVIALTGSSGK---TTT--KEMIGAILSQIAPTLIT 140
                   5556666677777777777788888887555...444..4899****997766665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
                   EEE.T--SHHHHHHHHHHHH CS
  Mur_ligase_C  17 idD.yahnpdslsaalkalr 35 
                   ++   a + +++  + +++r
    EGE23634.1 165 VIElGANHLGEIAYTASMVR 184
                   33336666666666666654 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.31
                   HHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTH CS
  Mur_ligase_C  28 saalkalreiapdkrlilvfgpggelgertrtfh 61 
                   +a+ +a+    +++ +  v++ +g+l+ ++++ +
    EGE23634.1 263 EATDQAM---LKAEGISSVLM-MGDLFADDIETF 292
                   5555555...34567889999.99***9999866 PP

  == domain 4  score: 39.1 bits;  conditional E-value: 1.1e-13
                   TTSSEEEEETTTEEEEEE.T--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE.EEEEESS CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidD.yahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasalads.lvvlgdy 81 
                   kgRl +++  dg+++idD y++np+s+ aa k+l+       +ilv+g++ elg+ + ++h  +g  ++ l ++ +++lg+ 
    EGE23634.1 355 KGRLMRLSM-DGYHIIDDtYNANPTSMLAAAKVLEAE--LDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDhVLTLGNH 433
                   799999998.99**********************654..469************************9999999955555554 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.72
                   .CCSCHCTHHHHHHHHCCHSSE.EEEEES CS
  Mur_ligase_C  53 lgertrtfhdefgrlasalads.lvvlgd 80 
                    +++  ++++++ +l+s+     +++  +
    EGE23634.1 450 HYTDKPSLLKDLRQLLSH-GSAtVLF--K 475
                   489999999999999997.4441444..3 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   8.7e-14   5.2e-10       5      49 ..      35      79 ..      32     103 .. 0.87
   2 ?   -1.7   0.0      0.62   3.7e+03      34      49 ..     217     232 ..     207     243 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 8.7e-14
                ESTTSCCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEEES-HGG CS
  Mur_ligase  5 igidgrgmsagalflalkGykvdGsdfieslialGaaavvghdaa 49
                i +d r+++ag++fla+kG+++d +dfi++++++Ga+a+++++  
  EGE23634.1 35 IVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVERVV 79
                789**************************************9866 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.62
                 CHHHTT-EEEES-HGG CS
  Mur_ligase  34 slialGaaavvghdaa 49 
                  l  +G+a+++++d+ 
  EGE23634.1 217 ALTSQGVAILPFSDDF 232
                 4889999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3272.97
//
Query:       EGE23635.1  [L=520]
Description: UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-43  147.6   0.0      7e-43  146.9   0.0    1.4  1  Mur_ligase_M     Mur ligase middle domain
    1.5e-20   73.2   0.0    2.2e-18   66.3   0.0    2.7  2  Mur_ligase_C     Mur ligase family, glutamate ligase domain
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.25   11.0   0.0    1.4  1  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0   1.2e-46     7e-43       1     191 [.     138     340 ..     138     341 .. 0.94

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 1.2e-46
                   EESSS-HHHHHHHHHHHHHCT...EEEEETTC............SS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TS CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka...gkvigtvg............ttnneiglpktlaemekkeaeyavlEvsshglgekrlegllkpdvavitnisp 82 
                   vTGtnGKTT+++lia++++++    +v+gt+g            tt + + ++ ++++m+++++++++lE+sshgl++ rl+g ++   a+ tn+s+
    EGE23635.1 138 VTGTNGKTTVSQLIAQLCQASgisSAVMGTAGngrlgqliqsanTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQG-VPIIGAIYTNLSR 233
                   9********************99889999999************9**************************************.9************ PP

                   TTHHHHSSHHHHHHHHHHHHHTSETTC..EEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSC CS
  Mur_ligase_M  83 dHldfhgtlenyaeaKaelferlkeeg..iavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggeleieipll 177
                   dHld+h ++  y +aKa+lf++       + v+n+dd+   +l++  + a+++++ ++ +k ++d++ak ++ + +++eie+  +++ge++  +pll
    EGE23635.1 234 DHLDYHADMASYRDAKAKLFDQSLFPTlrFGVVNLDDE--PALFDY-EAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQ-TSQGEMTAISPLL 326
                   ********************776655556*********..666666.566689***************************999.89*********** PP

                   SCHHHHHHHHHHHH CS
  Mur_ligase_M 178 GkhnvyNalaaiaa 191
                   G +nv N+la++aa
    EGE23635.1 327 GLFNVDNLLASMAA 340
                   ************97 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   3.7e-22   2.2e-18       2      90 ..     363     446 ..     362     447 .. 0.94
   2 ?    3.9   0.0      0.01        62      29      68 ..     470     509 ..     468     514 .. 0.81

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 3.7e-22
                   TTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS-TTSTHHHH CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdypraedsiaa 90 
                   +gR+++ ++ ++  +i+Dyah+pd+l+++l++lr +  ++rli+vfg+gg+   r+r +++++ ++  a+ad ++++ d+pr+e+++a+
    EGE23635.1 363 RGRMQRASS-QTGAFIIDYAHTPDALKQVLSSLRRH-CTGRLIAVFGCGGD---RDRGKRPQMTQAGLAYADQVILTADNPRSESPSAI 446
                   69******9.66689999****************99.67************...******************************99875 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.01
                   HHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHH CS
  Mur_ligase_C  29 aalkalreiapdkrlilvfgpggelgertrtfhdefgrla 68 
                   +a++++ ++a +  +++++g g e+++  +  + +f+ la
    EGE23635.1 470 NAIELAVKTAGKTDIVVIAGKGHETYQEIQGVRYDFDDLA 509
                   5666666777899********9999999888888888776 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.1e-05      0.25       8      47 ..     143     182 ..     140     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.1e-05
                      SHHHHHHHHHHHHHHTTE.EEEESSSTTSHHHHHHHHHHH CS
  Thymidylate_kin   8 GKttqaellkerlkeegikvvltrepggteiGekirelll 47 
                      GKtt+++l+++ ++++gi+  +    g++++G++i+++ +
       EGE23635.1 143 GKTTVSQLIAQLCQASGISSAVMGTAGNGRLGQLIQSANT 182
                      *******************7777888999*****999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3908.16
//
Query:       EGE23636.1  [L=652]
Description: peptidoglycan synthetase FtsI [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-70  238.4   0.4    1.6e-70  237.7   0.4    1.2  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    5.9e-18   65.8   0.7    1.2e-17   64.9   0.7    1.5  1  PBP_dimer       Penicillin-binding Protein dimerisation domai
  ------ inclusion threshold ------
       0.19   12.1   0.4       0.37   11.2   0.4    1.4  1  Aida_N          Aida N-terminus


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.7   0.4   2.7e-74   1.6e-70       4     306 .]     339     633 ..     337     633 .. 0.94

  Alignments for each domain:
  == domain 1  score: 237.7 bits;  conditional E-value: 2.7e-74
                     EEEETTT-BEEEEEEESE-TTTHHCC.TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-.SSSSEEE CS
  Transpeptidase   4 vvldaktgevlamaskpsydpnakvg.kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdn.kgsegit 96 
                     +v+d ktgevlam s ps++ n+  + +  + +nr v +++ePGS++K++t+aaale+g++++++++d+s+g +     ++++++ +  +++ it
      EGE23636.1 339 MVVDVKTGEVLAMGSWPSFNSNNLSErDGANERNRPVLDVFEPGSVMKPFTVAAALESGKYTTNSVIDTSPGSVS----VGGYTIRDgGNYGVIT 429
                     799*********************99988899***************************************9977....899999995445556* PP

                     HHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--SSH...HHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE--BS CS
  Transpeptidase  97 lrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptrkw...legatisfgiGltvtplqlaqayaaiangGklvkPhl 187
                     l + ++kSsn+++ k+a +l++d + ++  kfg+G kt +d+p e +G v  +k    + +at+s+g+G +vt  ql qayaa+ n G +++++l
      EGE23636.1 430 LDKLIQKSSNVASTKIALNLPTDAIANMQLKFGFGRKTALDFPAEASGrVSIPKErelSRRATLSYGYGQQVTLAQLTQAYAALGNQGLMQPLKL 524
                     ************************************************98888667889************************************ PP

                     EEEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCG.TCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SEEE CS
  Transpeptidase 188 vkaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtata.avegykvagKTGTAevagkkgngkkegakiswfvgyapadnpkyav 281
                     v          k ++ ++  ++is+ +ae + ++++ v+  g +t++a a+ gy+vagKTGT +  +++g+ +++ ++ + fvg apa++p+++v
      EGE23636.1 525 V----------KDQTIPKPTQVISAGHAEAIVRMMELVTGPG-STGQAaAINGYRVAGKTGTSRRTNPQGGYYTD-QHRAIFVGLAPASDPRFVV 607
                     *..........56777889***********************.5555559*****************99998766.67***************** PP

                     EEEECTCS.SSSSCCHHHHHHHHHHH CS
  Transpeptidase 282 avlieqpk.eaaggkaaapiakkile 306
                     ++l+e+p  +++ g+++ap+++++++
      EGE23636.1 608 SILVEDPRrQSYAGQVSAPVFHQVMK 633
                     ************************96 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.7   1.9e-21   1.2e-17       2     177 ..      97     294 ..      96     297 .. 0.75

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.9e-21
                 .EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHC.HHHTTS-H.HHHHH..................................HH CS
   PBP_dimer   2 ipapRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklakll.eseenldd.erlee..................................la 64 
                 +pa RG I Dr+g +LA n p yt+ ++p   +++     +++ +k+  ++  + ++ ++l+e                                   +
  EGE23636.1  97 EPAYRGVITDREGAPLAANAPLYTVFFDPYAYAEEYYR--LDNEIKTTkSETAKQKAlKKLKEmdlvrlaaaanyplekleaavgidhtldtsnsqkVK 193
                 79**********************77777666665544..44444444222222222444444556666666666666666666666666666665567 PP

                 CCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT-EEEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCHTCCTTCEEEESHHHHHTHHHHHECCC CS
   PBP_dimer  65 lkknsykaykpvviaediseeevarikenakdlpGinievepkRyYpkgelaahvlGyvgkiteeelekykekgyssgdliGksGlEkqyEeeLrGkkG 163
                  +  ++ ++   v+ + +s e ++ + +       i  e+  +RyY + e  a++lGy+ +            + ++g +iG++G+E++y+e+L Gk+G
  EGE23636.1 194 EALPKGASSRRLVLLNRVSPEVAKSVTDLGLF--AIGREQYFQRYYLQAEPNAQLLGYMAQS----------SDETQGGYIGRAGIEAKYNERLAGKDG 280
                 77888889999999999999999999988866..99*************************9..........46799********************** PP

                 EEEEEEECTSSCCE CS
   PBP_dimer 164 krqvkvdarGrile 177
                 k q+ +    ++++
  EGE23636.1 281 KVQILRGTGRQPIQ 294
                 *9998775544555 PP

>> Aida_N  Aida N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   6.1e-05      0.37      24      88 ..     129     196 ..     124     204 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.1e-05
      Aida_N  24 vdeYerlakqlkkeaes..qsseltedqkktlekvatalelRakalqavdgee.sitledlkkleevl 88 
                 ++eY rl +++k++ ++  +++ l++ ++  l ++a+a+++  ++l+a+ g +  +  ++ +k++e+l
  EGE23636.1 129 AEEYYRLDNEIKTTKSEtaKQKALKKLKEMDLVRLAAAANYPLEKLEAAVGIDhTLDTSNSQKVKEAL 196
                 69**********998887789999***************************88799999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4530.41
//
Query:       EGE23637.1  [L=116]
Description: cell division protein FtsL [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-19   69.8   2.8    1.7e-19   69.6   2.8    1.0  1  FtsL      Cell division protein FtsL
  ------ inclusion threshold ------
      0.068   13.1   0.7       0.34   10.8   1.0    1.7  2  Wzy_C_2   Virulence factor membrane-bound polymerase, C-termi
      0.073   12.4   0.1      0.094   12.0   0.1    1.1  1  SLATT_5   SMODS and SLOG-associating 2TM effector domain fami


Domain annotation for each model (and alignments):
>> FtsL  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   2.8   2.8e-23   1.7e-19       7      96 ..      13     102 ..       6     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 2.8e-23
        FtsL   7 kdllsvgkvlllllllvlvsavavvlithqtRqlvselekllserdkLeeewrnLlLEestlsahsrvesiAreqLkMkrpspeeeviis 96 
                 +  +    vl +l+++++++a+++v++t++ ++++ el+k  +e ++L++e ++L++E++t+sa+++v+++A+++L+M  p++e+ ++i+
  EGE23637.1  13 SMTWVLRLVLAVLVVMIFATALGIVTQTQERHEAYIELQKRSRELNELKIEEQRLMIEQQTFSATPQVAQRAVSELGMFFPTNENRRVIT 102
                 3344444455669***************************************************************************97 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.0   5.7e-05      0.34      45      96 ..      10      61 ..       4      83 .. 0.82
   2 ?    0.5   0.0      0.08   4.8e+02     150     181 ..      69     100 ..      63     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.7e-05
     Wzy_C_2 45 lrlrpklvlrvvalvlallglalllsilhdyqrleqlyltsepneaalrevt 96
                l+  +++vlr+v +vl++++ a+ l i+ ++q    +y+  ++++  l+e +
  EGE23637.1 10 LNSSMTWVLRLVLAVLVVMIFATALGIVTQTQERHEAYIELQKRSRELNELK 61
                5667899*************************99999999999988887764 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.08
     Wzy_C_2 150 ilslallGdedeAeqilararalfpeedakwv 181
                 i+ + ++  ++ A++ ++++   fp ++ ++v
  EGE23637.1  69 IEQQTFSATPQVAQRAVSELGMFFPTNENRRV 100
                 55566667788899999999999999988875 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.6e-05     0.094      73     123 ..      22      72 ..       5      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
     SLATT_5  73 ilvlvisllessknykerAekfhkcaleLselynelrllliseedlkekyk 123
                  +vlv+ +++++ +   + ++ h+ ++eL++ ++el++l+i+e+ l  +++
  EGE23637.1  22 LAVLVVMIFATALGIVTQTQERHEAYIELQKRSRELNELKIEEQRLMIEQQ 72 
                 46788889********************************97777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1526  (0.0851135); expected 358.6 (0.02)
Passed bias filter:                      841  (0.0469072); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 869.09
//
Query:       EGE23638.1  [L=54]
Description: hypothetical protein EA1_08382 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 438.21
//
Query:       EGE23639.1  [L=330]
Description: S-adenosyl-methyltransferase MraW [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-93  312.6   0.0    3.7e-93  312.4   0.0    1.0  1  Methyltransf_5   MraW methylase family
     0.0016   18.3   0.0      0.033   14.0   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
     0.0045   17.7   0.1       0.04   14.6   0.0    2.3  2  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.4   0.0   6.2e-97   3.7e-93       1     306 [.      10     317 ..      10     320 .. 0.94

  Alignments for each domain:
  == domain 1  score: 312.4 bits;  conditional E-value: 6.2e-97
                     XXXX--TTTHHHHHHT--.........-TT-EEEES--TTSHHHHHHHTT--TT.EEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHH CS
  Methyltransf_5   1 eleHvpVLlqevvellep.........kedgvyiDaTlGaggHsealLeqlsel.rligidrDksalarakerLkefekrltlvkgnfkelkeal 85 
                     e+ H++VLl e+v ++           k  gvy+DaT+G+ggHs+ lLe l  + +l  +d+D++a+a+ak+ L++   r+++v+++f++l++ l
      EGE23639.1  10 EFSHTTVLLPETVAMVLGvkqlndvtsKVSGVYVDATFGRGGHSQLLLEYLAPEaTLAVFDKDPEAIAVAKS-LAAQDTRIKVVHDSFAHLTKNL 103
                     589*********988665688899999***********************98887999*************9.99999***************** PP

                     HHTTTT-EEEEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHHS---BHHH CS
  Methyltransf_5  86 aeanvtkvdgillDLGvSslqldkaerGFsfaedapLDmRmdqsaeltAaevlnrlseeeLakilkeygeekfakriakaivekrkkkpiettke 180
                     +  +++k+dg+++DLGvSs+qld+  rGFsf++d+ +DmRmd+++    +e+l+r+s  eLa++l+eygee+++++ia+ai++ +     ++t++
      EGE23639.1 104 QALGIDKIDGLMADLGVSSPQLDDGTRGFSFMRDGVVDMRMDTTRGEPVSEWLQRVSADELADVLYEYGEERHSRKIARAIKSMQ---NYTSTRQ 195
                     *********************************************************************************9866...6789*** PP

                     HHHHHHHHS-------..-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT-----.------------ CS
  Methyltransf_5 181 laevikkvvpakekrkkihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkvfkeaskkeev.Paglpvaseelk 274
                     laevik++ pa +k k  hpat+ FQA+RI++N+El  +e +l++++ +l+ gg lavisFhSledr++k++++  s+ +    a+lp++++   
      EGE23639.1 196 LAEVIKQAHPAWQKGK--HPATQSFQAMRIFINNELGDVEAFLAQSIGVLKAGGMLAVISFHSLEDRLIKQFLQRHSRGQYEeDARLPIIPKR-- 286
                     ***********99966..*******************************************************999997655599****9987.. PP

                     --EEEEE..E.E---HHHHHH-GGGTT-EEEEE CS
  Methyltransf_5 275 aklklitk.kpilpseeeikeNprsrsakLrvi 306
                        k  +k k i ps++e+k+Npr+rsa Lr +
      EGE23639.1 287 --PKYFGKpKRIGPSDQEVKANPRARSAWLRGA 317
                     ..44444438899*****************965 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.6e-06     0.033       8      71 ..      43     104 ..      37     131 .. 0.80
   2 ?    2.2   0.0     0.024   1.4e+02      85     123 ..     227     266 ..     171     291 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.6e-06
  Methyltransf_31   8 lDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklle 71 
                      +D+  G G  +  l e l p+a++  +D ++eai +A++ a++    ++++ + ++ +l k+l+
       EGE23639.1  43 VDATFGRGGHSQLLLEYLAPEATLAVFDKDPEAIAVAKSLAAQDT--RIKVVHDSFAHLTKNLQ 104
                      566669999******************************988653..56677766666666544 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.024
  Methyltransf_31  85 naladpdkileeiervlkpggilliedpr.llaelpakve 123
                      n l d +++l + + vlk gg l++ +++ l+++l++++ 
       EGE23639.1 227 NELGDVEAFLAQSIGVLKAGGMLAVISFHsLEDRLIKQFL 266
                      778888999999999*********9999954455554443 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.6e-06      0.04       3      60 ..      44     101 ..      43     117 .. 0.88
   2 ?   -0.0   0.0      0.24   1.5e+03      63      97 .]     216     247 ..     181     247 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.6e-06
                      EET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSS CS
  Methyltransf_25   3 dlGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnvefvqgdaedlpf 60 
                      d+  G+G +++ l++ l ++a++  +D ++e+++ a++ a++ + ++++v+ ++ +l  
       EGE23639.1  44 DATFGRGGHSQLLLEYLaPEATLAVFDKDPEAIAVAKSLAAQ-DTRIKVVHDSFAHLTK 101
                      7889************9779*******************965.57******99988865 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.24
                      TTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  63 gsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      +sf ++ ++ +    +  d+e++l++   vLk gG
       EGE23639.1 216 QSFQAMRIFIN---NELGDVEAFLAQSIGVLKAGG 247
                      45555555322...234578899999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2636.76
//
Query:       EGE23640.1  [L=498]
Description: glutamyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-108  362.4   0.0   1.9e-108  362.1   0.0    1.1  1  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.1   0.0  1.1e-112  1.9e-108       2     314 .]       5     321 ..       4     321 .. 0.99

  Alignments for each domain:
  == domain 1  score: 362.1 bits;  conditional E-value: 1.1e-112
                   -EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---S........SEEEEGGGGHHHHHHHHHHHHH CS
  tRNA-synt_1c   2 VrtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwd........ekptyqsdrfdelkkyaeeLik 90 
                   VrtR+aP+PtG++H+G+a++al+n +fAk+ +G+filRieDTd+ r++++ e+ il++lkw g++w         + p++qs+r d++kkyae+L+ 
    EGE23640.1   5 VRTRIAPSPTGFPHVGTAYIALFNLVFAKSMGGEFILRIEDTDQVRSTKQSEQMILDALKWAGLSWAegpdvggpHAPYRQSERADIYKKYAEKLLD 101
                   9*****************************************************************99*******99******************** PP

                   TTSEEEE-STHHHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSSGGGSSTEEEEEEESGGGSBTTTBTSTSEEE-H CS
  tRNA-synt_1c  91 kGkAYvcectkeeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideessvefrDlvrgriklepqeihdlvivksdiyPtY 187
                   +G+A++c+ct+eel ++re+q+++g     +yd++ ++l++ee     a+g+++v+R++++ ++ ++++D++rg++ + +++++++v+ k+d++PtY
    EGE23640.1 102 DGHAFRCFCTPEELDAMREAQMAAG--LPVKYDGRYANLSREESDALVAQGKPFVIRMRVPSNGVCTIKDMLRGEVVIPWEQVDMQVLLKTDGLPTY 196
                   **********************999..7899****************************************************************** PP

                   HHHHHHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHH CS
  tRNA-synt_1c 188 dfavvidDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekere 284
                   ++a+v+dD+l++ithvlr+ee+l + pk+ +l+e++g+++p+  h++l++n +k+klSKRk+ ++  + ++++ + l+eal+n+l r+G++  +e+e
    EGE23640.1 197 HLANVVDDHLMQITHVLRGEEWLPSAPKHQLLYEYFGWQMPELCHMPLLRNPDKSKLSKRKNPTS--ITYYRDAGILPEALMNYLGRMGYSLPNEQE 291
                   *****************************************************************..****************************** PP

                   HHHHHCCCSSS.EEEEHHHHHHHHHHHHHH CS
  tRNA-synt_1c 285 lftreeliksfdlnresksleafdrkkLew 314
                    ft +e+i+sfd++r s    +fd++kL w
    EGE23640.1 292 KFTLDEMIQSFDIQRISLGGPVFDIEKLYW 321
                   ***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3946.42
//
Query:       EGE23641.1  [L=224]
Description: hypothetical protein EA1_08397 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-13   48.4   9.9    9.5e-13   47.8   9.9    1.4  1  YdjM      LexA-binding, inner membrane-associated putative hy
      0.003   17.2   0.3      0.003   17.2   0.3    3.1  4  DUF3188   Protein of unknown function (DUF3188)
  ------ inclusion threshold ------
      0.041   14.0   1.8      0.041   14.0   1.8    1.8  2  DUF3671   Protein of unknown function


Domain annotation for each model (and alignments):
>> YdjM  LexA-binding, inner membrane-associated putative hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   9.9   1.6e-16   9.5e-13       1     116 [.       1     168 [.       1     211 [. 0.82

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.6e-16
        YdjM   1 Mdgl.tHallGaalglalaallgaake.......avllavavlgAllPDiDhpsstlgrklgllskklak............................. 62 
                 M ++ tH++ G++ + ++aa+     e          lav+ lg+llPDiD  +s+ +++  l+ +++ +                             
  EGE23641.1   1 MANFhTHLTAGVIGSTIIAAFGFYF-ElyglttaVLCLAVGTLGSLLPDIDLDHSKPASQGFLIASLVVStlitilyanryhadrllidslilwmgafl 98 
                 77777********999999998875.459997666677777777*******999998887767666665579999************************ PP

        YdjM  63 ............lvgHRgftHSllflallalvlllllrlfgrsa..lrlgll..lllgvlsHlllDlltk 116
                             l+ HRg+ HS++ +a+++l+l + ++   + +  +++ ++  l++g+l+Hl+lD +  
  EGE23641.1  99 llrlglfgtfsrLTVHRGMVHSVPYMAMFGLLLVCGAFYGLKLTafVSWLFGaaLFMGALIHLILDEIYG 168
                 *************************999999888888777777655333333569999********8755 PP

>> DUF3188  Protein of unknown function (DUF3188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2       2.1   1.3e+04      30      37 ..      11      18 ..      10      23 .. 0.67
   2 !   17.2   0.3   5.1e-07     0.003       9      38 ..      70     100 ..      64     110 .. 0.86
   3 !    3.9   0.8    0.0071        43       2      43 ..      96     138 ..      96     141 .. 0.79
   4 ?   -3.2   0.2       1.2     7e+03      29      38 ..     152     161 ..     151     162 .. 0.70

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.1
     DUF3188 30 llvGlgLi 37
                +++G+ +i
  EGE23641.1 11 GVIGSTII 18
                67777766 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 5.1e-07
     DUF3188   9 gllillysqrqgsdr..lqslPallvGlgLiv 38 
                  l+ +ly +r+++dr  + sl +l +G++L++
  EGE23641.1  70 TLITILYANRYHADRllIDSL-ILWMGAFLLL 100
                 6899*****************.*******986 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.0071
     DUF3188   2 AplLillgllillysqrqgsdr..lqslPal.lvGlgLivsgavg 43 
                 A lL  lgl + +  +r    r  + s+P + + Gl+L++   +g
  EGE23641.1  96 AFLLLRLGLFGTF--SRLTVHRgmVHSVPYMaMFGLLLVCGAFYG 138
                 679999*******..888888888999997615699988877665 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.2
     DUF3188  29 allvGlgLiv 38 
                 al++G+++++
  EGE23641.1 152 ALFMGALIHL 161
                 4588888875 PP

>> DUF3671  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.39   2.3e+03      92     106 ..      62      76 ..      24      89 .. 0.63
   2 ?   14.0   1.8   6.8e-06     0.041      50     107 ..     149     208 ..     137     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.39
     DUF3671  92 ffiilvviillvliY 106
                 ++  lvv  l++++Y
  EGE23641.1  62 LIASLVVSTLITILY 76 
                 222333333333433 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6.8e-06
     DUF3671  50 lpvllpliglivpilfeaksk..kslkkkelevlatsieklytiffiilvviillvliYi 107
                 + + l++ +li++il+e++      l+ k+    a +++++++ f +i+ ++i+lvliY+
  EGE23641.1 149 FGAALFMGALIHLILDEIYGVniYGLRLKKSAGTAFKFFEIKKPFGYIFLYVIILVLIYV 208
                 5567888899999**99998866344455555778899*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1678.69
//
Query:       EGE23642.1  [L=298]
Description: hypothetical protein EA1_08402 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-77  259.4   0.4      3e-77  259.2   0.4    1.1  1  DUF3025   Protein of unknown function (DUF3025)


Domain annotation for each model (and alignments):
>> DUF3025  Protein of unknown function (DUF3025)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.2   0.4   1.7e-81     3e-77       1     210 []      71     291 ..      71     291 .. 0.96

  Alignments for each domain:
  == domain 1  score: 259.2 bits;  conditional E-value: 1.7e-81
     DUF3025   1 lrFvaqdalpageaYEaiiaetgevptRdnlHDffnaliWlafPrtKaalnalqaaeiaaegvgkkRgkvrdaltlfDEngvllvladea....laeal 95 
                 l+F+aqd+lp+g+aYE++i++t ++ptRdnlHD+f+a++W  fP+tK++lna+++a++a++++++ R++vrd++t+fDEng+++v++++a    + +al
  EGE23642.1  71 LQFTAQDDLPHGTAYEMYIHQTAKIPTRDNLHDWFGACVWSVFPKTKSMLNAKHIAHFAHQNTSNGRNRVRDTITVFDENGAIFVVSEDAigtqIGDAL 169
                 68************************************************************************************9999888899*** PP

     DUF3025  96 rafdWkelfveeReaw......eeeievvvfGHallekllqpykaltakalvveveeevfalsaaeqaaevdallaeele..eeallaakelsPlPvlG 186
                  afdW++++v++R+ w      +++++v+vfGHalle+l++pyk+l+a++l+v+v++++f+ls+ eq +++d++l+++l+    +  ++k+l+PlP+lG
  EGE23642.1 170 VAFDWQNCLVNTRQYWyhllqpDTHAKVFVFGHALLEQLISPYKSLCAHTLIVHVPKAFFELSQPEQLKRIDEILCNQLNdfLVEGVTPKHLHPLPILG 268
                 ********************999********************************************************633355666*********** PP

     DUF3025 187 vpgwwaenedaafYddtevFrpkR 210
                 vp++w +n+d++fY+d+ vFr++R
  EGE23642.1 269 VPHFW-DNADPSFYQDAFVFRAGR 291
                 *****.5**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2251.49
//
Query:       EGE23643.1  [L=294]
Description: glutamine amidotransferase class-II [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-92  308.8   0.0    2.7e-92  308.6   0.0    1.0  1  GATase_4  Glutamine amidotransferases class-II
    1.7e-05   25.0   0.1    4.1e-05   23.8   0.1    1.6  1  GATase_6  Glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.6   0.0     3e-96   2.7e-92       1     259 [.       1     272 [.       1     282 [. 0.94

  Alignments for each domain:
  == domain 1  score: 308.6 bits;  conditional E-value: 3e-96
    GATase_4   1 mceLLgmssnvptdisfsftgfaarggltdahadGwGiafye.....gkaarvfkdpepsaesplaelvreypiksknvvaHiRkatqGevklenthpF 94 
                 mc+LLgm++n+ptdi fsftgf++rggltd h+dG+Gi f+e     + + r f+d++ps  sp+a lv++ypi++ nv+aHiRkat+G   l+n hpF
  EGE23643.1   1 MCQLLGMNANTPTDIGFSFTGFRKRGGLTDYHEDGFGIVFFErtalgDIGLRQFHDDKPSHLSPVADLVNHYPIEAMNVIAHIRKATTGGHGLANIHPF 99 
                 9*********************************************999************************************************** PP

    GATase_4  95 vRelwgrewifAHnGdlke.ykpkl........egrfePvGsTDsElafCelleelasrfekaepsaeeleralaelakeiaelGvfnlllsdgralfa 184
                 vRe wg++w fAHnG++++ +  ++        ++++ PvG+TDsElafC+ll++l+++f k++p+ e l++ l++  + +a++G fn l+s+g++  a
  EGE23643.1 100 VREVWGEQWAFAHNGQMSDgFIRRTqrlmtngnAEHYAPVGTTDSELAFCYLLNRLKATF-KTRPTDEMLFAFLTAQCRYLAANGLFNCLISNGNWQLA 197
                 *****************6555443335688887889************************.569*********************************** PP

    GATase_4 185 hastrLvyilRkaPfgeaelkdedlevdfeevttkedrvavvatepLtrdetWkklepGellvfrdGalvatase 259
                 +a++ L y++RkaPfgea+l+d +++v+f++vtt++d+v++++t pLt++e+W++l+  e +vf+dG++v + + 
  EGE23643.1 198 YAGSLLFYLTRKAPFGEATLSDGEMTVNFSDVTTDKDKVTILVTIPLTDNEQWQQLAVDECIVFHDGEMVFKDTP 272
                 ********************************************************************9987443 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   4.6e-09   4.1e-05      14      81 ..      78     152 ..      60     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 4.6e-09
    GATase_6  14 valaHvRlaivglaeeega.qPf..psedgrlllvhNGeiynyk.....elreelpalkglafrsrsDtevlla.ll 81 
                  ++aH R a++g     ++ +Pf      ++++++hNG++++        l  +  a + +a  +++D+e+ +  ll
  EGE23643.1  78 NVIAHIRKATTGGH-GLANiHPFvrEVWGEQWAFAHNGQMSDGFirrtqRLMTNGNA-EHYAPVGTTDSELAFCyLL 152
                 689**********8.9999****74444567********998754433344444444.5556777999998877444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2304.53
//
Query:       EGE23644.1  [L=333]
Description: homoserine kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-19   70.0   0.0    3.5e-19   69.7   0.0    1.1  1  APH       Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   1.9e-23   3.5e-19       4     219 ..      28     247 ..      25     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.9e-23
                 EE--.SSCEEEEEEETT.-....-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-C.TTBS-EEETTE.........EEEEEE----EE-SSHHH CS
         APH   4 elsggasnrtylvttpa.g....ryvlrrnpparaaeeirrevallrlLakagvpvPevl.agdtddeeigl.........lfalieyvpgrsllrkls 87 
                 ++  g  n +++++t++      + v+++++++  + +i +++ +++ L ++ + ++++l  +   +++ig            ++++ + g ++     
  EGE23644.1  28 PITQGIKNSNWFIQTDSdEdgefSHVFTLYEER-VPDDIIKMATIMHTLKDRLP-IAAPLiKMTAKGNHIGEdcvmryenkAILIVPKLSGSHPVL--- 121
                 7889999********99658899999*******.****************9955.44443255567777776666666677777777777777777... PP

                 HHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC....T CS
         APH  88 aaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvd..pdd 184
                    + +++ ++g +la lh++ ++  p +d++ + l+++  + ++  ++ + +   l  +++  ++a l++ lp    ++l+H D   +N l+d   d 
  EGE23644.1 122 --TDVAMCHEMGKALATLHDALTTLQPSEDYGVP-LYDWTRVKERETAYMPTDEARLMNDIWT-AYANLPDDLP----KGLCHLDMFADNTLWDftGDT 212
                 ..899***************************65.9999999888889988888888999999.8999999999....9*****************999 PP

                 TEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCH CS
         APH 185 grvtGviDfedaglgpplyDlavllrswtseldpe 219
                 +++tG++Df  +++ ++l D+a+++++++ + + +
  EGE23644.1 213 PKLTGLLDFTEVSVEHYLMDIAITINDFCTTWGNA 247
                 *************************8899776644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2707.93
//
Query:       EGE23645.1  [L=257]
Description: imidazole glycerol phosphate synthase subunit HisF [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-89  297.4   1.2    7.1e-89  297.2   1.2    1.0  1  His_biosynth  Histidine biosynthesis protein
    3.4e-07   30.0   4.1    0.00045   19.7   1.4    2.2  2  NMO           Nitronate monooxygenase
      9e-07   28.4   0.4     0.0023   17.3   0.1    2.1  2  ThiG          Thiazole biosynthesis protein ThiG
    3.5e-06   26.3   0.4    7.1e-05   22.1   0.1    2.1  2  Dus           Dihydrouridine synthase (Dus)
    0.00018   20.9   0.2       0.14   11.5   0.0    2.3  2  TMP-TENI      Thiamine monophosphate synthase
     0.0014   17.7   3.8       0.17   10.9   0.2    2.1  2  IMPDH         IMP dehydrogenase / GMP reductase domain
     0.0019   17.6   0.2       0.03   13.8   0.0    2.2  2  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
     0.0084   15.4   0.1        1.5    7.9   0.0    2.3  2  DHO_dh        Dihydroorotate dehydrogenase
  ------ inclusion threshold ------
       0.05   12.4   0.0      0.098   11.5   0.0    1.4  1  Trp_syntA     Tryptophan synthase alpha chain
      0.061   12.5   0.1        9.9    5.3   0.0    2.2  2  DUF561        Protein of unknown function (DUF561)
        3.7    6.5   5.6       0.83    8.6   0.1    2.2  2  FMN_dh        FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.2   1.2   4.4e-92   7.1e-89       1     229 []       5     239 ..       5     239 .. 0.98

  Alignments for each domain:
  == domain 1  score: 297.2 bits;  conditional E-value: 4.4e-92
                   EEEEEEEEETTEEEEECTTCSTCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-S CS
  His_biosynth   1 riipalDlkdGkvVrlvkGdrfqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagad 97 
                   r+ip+lD+++G+vV   kG++f + ++agdpve+akry+++gade++++D++a+++gr++ +++ve+ia+++fip++vGGG+r+led+++ll+agad
    EGE23645.1   5 RLIPCLDIENGRVV---KGVNFIDIKDAGDPVEVAKRYNDQGADEITFLDITASSDGRDTTYEMVEKIARTIFIPLTVGGGVRKLEDIRNLLNAGAD 98 
                   79************...******************************************************************************** PP

                   EEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEE.....C...EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHH CS
  His_biosynth  98 kviigtaavknpelikelaekfgsqkivvaiDarr.....g...ykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkel 186
                   kv i++aa++np++++++a++fg+q+ivv+iDa+r     g   ++++++g+r+ tg+dav++a +++++gage+l+t++d dGt++G+dl lt+++
    EGE23645.1  99 KVGINSAAITNPDFVNDAASRFGNQCIVVSIDAKRvgdidGqprWEIFTHGGRKATGIDAVQWAVEMAKRGAGELLVTSMDGDGTRQGYDLLLTRTI 195
                   ***********************************865542899***************************************************** PP

                   HHHHSSEEEEESS--SHHHHHHHHHTTC.SEEEESHHHHTTSS- CS
  His_biosynth 187 aeavkipviasGGvgsledlkelksegv.davivgsalyegelt 229
                   ++ v+ipviasGGvg+l++l++   +g+ dav+++s++++g++t
    EGE23645.1 196 SDLVNIPVIASGGVGNLQHLADGILTGKaDAVLAASIFHFGDYT 239
                   ************************99999************986 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00014      0.23     179     226 ..      60     107 ..      42     119 .. 0.88
   2 !   19.7   1.4   2.7e-07   0.00045     142     222 ..     155     230 ..     148     245 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
         NMO 179 kglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfL 226
                   + ++v++++  + iP+   GG+ + +++   L +GA  v i ++ +
  EGE23645.1  60 DTTYEMVEKIARTIFIPLTVGGGVRKLEDIRNLLNAGADKVGINSAAI 107
                 668899999999*****************************9988865 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.7e-07
         NMO 142 tissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidrrgvaaaLalG.Asgvqig 222
                  i +v+ a ++++rGa  l v+ +++ G +    +     + L  ++ d v+iPviA GG+ + + +a  +  G A +v  +
  EGE23645.1 155 GIDAVQWAVEMAKRGAGELLVTSMDGDGTRQ--GY----DLLLTRTISDLVNIPVIASGGVGNLQHLADGILTGkADAVLAA 230
                 577899999****************988766..46....589*******************999998754444426666555 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.4e-06    0.0023     134     217 ..      33     116 ..      20     134 .. 0.86
   2 !    9.4   0.0   0.00035      0.57     167     217 ..     192     243 ..     175     250 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
                 HHHHHHHHHTT-SEBEEBSSSTTS----S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHH CS
        ThiG 134 lvlarrleevGcaavmPlaapiGsglGllnkealkiiieeakvPvivDAGigspsdaaqamelGadavllntavaeakdpvamA 217
                 + +a+r ++ G+  +  l     s    ++ e+++ i +++ +P+ v  G+++ +d+ + ++ Gad v +n+a  +  d v+ A
  EGE23645.1  33 VEVAKRYNDQGADEITFLDITASSDGRDTTYEMVEKIARTIFIPLTVGGGVRKLEDIRNLLNAGADKVGINSAAITNPDFVNDA 116
                 4489999999999998887776666666778899**************************************998888888766 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00035
                 HHHHHHH-SS-BEEES---SHHHHHHHHHTT.-SEEEESHHHHTSSSHHHHH CS
        ThiG 167 lkiiieeakvPvivDAGigspsdaaqamelG.adavllntavaeakdpvamA 217
                  ++i + +++Pvi   G+g+ ++ a  +  G adavl ++     +  ++ A
  EGE23645.1 192 TRTISDLVNIPVIASGGVGNLQHLADGILTGkADAVLAASIFHFGDYTIKQA 243
                 46788888******************99999568999887655555555555 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   4.3e-08   7.1e-05     135     225 ..      27     115 ..      17     132 .. 0.85
   2 ?    2.6   0.0     0.036        58     177     212 ..     194     229 ..     156     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.3e-08
                 TTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHH CS
         Dus 135 deeenalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfae 225
                 ++  + +e+ak+ +++Ga+++t    t+    +    +e ++++ + + ip+ + G+++++ed+++ l+  Gad v i  +a  nP +++ 
  EGE23645.1  27 KDAGDPVEVAKRYNDQGADEITFLDITASSDGR-DTTYEMVEKIARTIFIPLTVGGGVRKLEDIRNLLNA-GADKVGINSAAITNPDFVND 115
                 445568999999999999999998888776665.5579******************************99.***************99984 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.036
                 HHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEE CS
         Dus 177 evkqavsipviaNGdIkdaedaqaileetGadgvmi 212
                  + + v+ipvia G++ +++ + + +    ad+v++
  EGE23645.1 194 TISDLVNIPVIASGGVGNLQHLADGILTGKADAVLA 229
                 5777899***********999887776667777765 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   8.4e-05      0.14     134     180 ..      58     105 ..      31     106 .. 0.74
   2 !    7.4   0.0    0.0015       2.4     121     161 ..     169     211 ..     149     231 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.4e-05
    TMP-TENI 134 aeplgleglkelaealeiPvvaiGGit.lenvaevleagadgvavvsa 180
                  +    e ++++a+++ iP+ + GG++ le++ ++l+agad v + sa
  EGE23645.1  58 GRDTTYEMVEKIARTIFIPLTVGGGVRkLEDIRNLLNAGADKVGINSA 105
                 3566789999****************6379***********9987665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0015
    TMP-TENI 121 gvGpifpTdtKkdaeplglegl..kelaealeiPvvaiGGitl 161
                 g+G +  T+   d + +g ++l  +++++ ++iPv+a GG+  
  EGE23645.1 169 GAGELLVTSMDGDGTRQGYDLLltRTISDLVNIPVIASGGVGN 211
                 56777777777777777777665599**************963 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2    0.0001      0.17     108     179 ..      35     107 ..      12     117 .. 0.72
   2 !    8.1   0.4   0.00069       1.1     185     239 ..     178     233 ..     153     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
                 HHHHHHHTT-SEE.EEE..-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STT CS
                 xxxxxxxxxxxxx.xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 108 rvkalveagvdvl.vvd..sahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsi 179
                  +k+  ++g+d + ++d  ++    +++ e+v++i +++     ++G v   e +++L++agad  kvGi + +i
  EGE23645.1  35 VAKRYNDQGADEItFLDitASSDGRDTTYEMVEKIARTIFIPLTVGGGVRKLEDIRNLLNAGAD--KVGINSAAI 107
                 5555566666644134411334445678899999999885444789999999999999999999..677766665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00069
                 HCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT.-SEEEESCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
       IMPDH 185 vagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaG.adavmlGsll 239
                 + g G  q   ++ + ++ +  ++pvia GG+ + ++++  +  G adav+  s++
  EGE23645.1 178 MDGDGTRQGYDLLLTRTISDLVNIPVIASGGVGNLQHLADGILTGkADAVLAASIF 233
                 5677888888888888888899*******************999978999988776 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.8e-05      0.03     128     167 ..      63     102 ..      60     107 .. 0.90
   2 ?    1.6   0.0     0.095   1.6e+02     132     156 ..     193     217 ..     189     231 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
                   HHHHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE CS
  G3P_antiterm 128 pkvikeikkelkipiiaGGLietkedveealkaGaiavst 167
                    +++++i +++ ip+  GG +++ ed++++l+aGa+ v  
    EGE23645.1  63 YEMVEKIARTIFIPLTVGGGVRKLEDIRNLLNAGADKVGI 102
                   57999******************************99865 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.095
                   CTSTTS...EEEEESS--SHHHHHH CS
  G3P_antiterm 132 keikkelkipiiaGGLietkedvee 156
                   + i++ ++ip+ia+G + + +++ +
    EGE23645.1 193 RTISDLVNIPVIASGGVGNLQHLAD 217
                   67888899*****998877766544 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00093       1.5     228     279 ..      60     109 ..      57     119 .. 0.83
   2 !    5.1   0.0     0.007        11     235     283 ..     193     240 ..     188     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00093
                 HHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHH CS
      DHO_dh 228 dialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfe 279
                 d+  +++ ++++++   ip+   GG+   eD  + ++aGA  v + +a + +
  EGE23645.1  60 DTTYEMVEKIARTIF--IPLTVGGGVRKLEDIRNLLNAGADKVGINSAAITN 109
                 666777788887777..999999************************99644 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.007
                 HHHHHHTTT.S-EEEESS--SHHHHHHHHHHT.ECEEEESHHHHHHGTCH CS
      DHO_dh 235 relykrlkkeipiIgvGGiesgeDalekieaG.Aslvqvytalvfegpki 283
                 r++++ ++  ip+I++GG+   +   + i  G A +v   + ++f +++i
  EGE23645.1 193 RTISDLVN--IPVIASGGVGNLQHLADGILTGkADAVLAASIFHFGDYTI 240
                 56667777..*********9999999999888677777777777777765 PP

>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     6e-05     0.098     183     232 ..      59     109 ..      51     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
                 -TTHHHHHHHHHHCTSS-EEEESSS-SHHHHHHHH.TT-SEEEE-HHHHHH CS
   Trp_syntA 183 aaevdelverlkkltavPvavGFGistkeqvkqva.kvadGvivGSalvkk 232
                  +++ e+ve++ ++   P+ vG G+++ e+++++  ++ad v + Sa +++
  EGE23645.1  59 RDTTYEMVEKIARTIFIPLTVGGGVRKLEDIRNLLnAGADKVGINSAAITN 109
                 567899***************************998******999998875 PP

>> DUF561  Protein of unknown function (DUF561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0064        10      38      87 ..      44     102 ..      11     127 .. 0.68
   2 ?    5.3   0.0     0.006       9.9     178     198 ..     192     212 ..     175     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0064
      DUF561  38 kakatyvDiaadp.......klvkkvksvsniPiCvsa.v.eakllleavkaGadlvei 87 
                 + ++t++Di+a +       ++v+k+  ++ iP+ v + v + + + +   aGad v i
  EGE23645.1  44 ADEITFLDITASSdgrdttyEMVEKIARTIFIPLTVGGgVrKLEDIRNLLNAGADKVGI 102
                 44678999987542222233589999999999999975343567888888888887766 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.006
      DUF561 178 tyeiskkvslPvicasGlsdv 198
                 t +is  v++Pvi++ G+ ++
  EGE23645.1 192 TRTISDLVNIPVIASGGVGNL 212
                 779**************9765 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00051      0.83     252     299 ..      57     102 ..      20     109 .. 0.83
   2 ?   -1.0   1.9      0.42   6.8e+02     253     306 ..     182     236 ..     145     243 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00051
                 TT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEE CS
      FMN_dh 252 dgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavll 299
                 dg  +t ++  +i++ +   i++ v gG+r+ +D+   l  GAd v++
  EGE23645.1  57 DGRDTTYEMVEKIARTIF--IPLTVGGGVRKLEDIRNLLNAGADKVGI 102
                 666677777777777776..9999999999999999999999999987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.42
                 T---HHHCH..HHHHHHH..SS-EEEESS--SHHHHHHHHHTT.-SEEEESHHHHHH CS
      FMN_dh 253 gapatidvL..peiveavggrievlvDgGirrGsDvlkAlalG.AdavllGRpflyg 306
                 g+    d L   +i + v+  i+v+++gG+ + ++ +  +  G Adavl +  f++g
  EGE23645.1 182 GTRQGYDLLltRTISDLVN--IPVIASGGVGNLQHLADGILTGkADAVLAASIFHFG 236
                 4444444442234455554..899999999888888888888888888887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2035.13
//
Query:       EGE23646.1  [L=164]
Description: 6,7-dimethyl-8-ribityllumazine synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-54  182.1   0.4    5.2e-54  181.9   0.4    1.1  1  DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase


Domain annotation for each model (and alignments):
>> DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.9   0.4   2.9e-58   5.2e-54       2     140 ..      24     161 ..      23     162 .. 0.97

  Alignments for each domain:
  == domain 1  score: 181.9 bits;  conditional E-value: 2.9e-58
                    EEEEEEEESTTHHHHHHHHHHHHHHHHHCTTSSCCEEEEEESSCCCHHHHHHHHCTSTT-.SEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHHHC CS
  DMRL_synthase   2 lriaiVvarfneeitdkllegaldelkeagvaeenidvvtVPGafElplaakklaesskyldavialGvvirGetphfeyvaeavskglmrvsldt 97 
                    lri+i v+rfn +++++l+egald+l ++gv  eni+vv+VPGafElpl++k++a +++y da+++lG++irG+tphf++va++++kgl +v+l++
     EGE23646.1  24 LRIGIAVGRFNGFLVESLVEGALDALLRHGVLGENITVVRVPGAFELPLTTKRMAVTGNY-DAIVVLGAIIRGATPHFDIVASESAKGLSHVALHH 118
                    8*******************************************************7667.*********************************** PP

                    TS-EEEEEEEESSHHCCHHCCTSTCCCHHHHHHHHHHHHHHHH CS
  DMRL_synthase  98 gvPvifgvltvdteeqaleraggkagnkGeeaaeaalemanll 140
                    ++Pvi+g+lt++++eq +erag+kagnkG eaa++a+em+++l
     EGE23646.1 119 DIPVINGILTTENIEQTIERAGTKAGNKGYEAAMTAIEMVSVL 161
                    ***************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1293.34
//
Query:       EGE23647.1  [L=175]
Description: transcription termination/antitermination protein NusB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-25   89.8   0.1      2e-25   89.6   0.1    1.1  1  NusB      NusB family
     0.0019   18.1   0.1      0.016   15.2   0.1    2.2  2  HLH       Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
      0.025   15.0   0.8      0.066   13.7   0.8    1.7  1  CelTOS    Cell-traversal protein for ookinetes and sporozoite


Domain annotation for each model (and alignments):
>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.1   3.3e-29     2e-25       1     134 []      26     164 ..      26     164 .. 0.90

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 3.3e-29
                 HHHHHHHHHHHHHHHHH-S-.HHHHHHHHHHHT-............--HHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT--GGGS-HHHHHHHHHHHHH CS
        NusB   1 skaRelalqalyqveinked.eeekeailqealn.....klleeedldeedkafltelvkgvlrnleelDeliekllknwplerlskvdraiLrlavye 93 
                 +kaR++a+q ly++ +++ + ++ ++++l          ++++++++++ + ++++el++ + ++ +el++li + l +++l++l+ +++aiL++++ye
  EGE23647.1  26 RKARRFAVQGLYEWLMTDYRfAKQRRDLLGGNEPhtiaaRTRADNAMHTVHLGYYHELMRNIPAQIDELESLIVSQL-DRELSKLDIIEHAILLIGTYE 123
                 589***********99999994444444433333446679999********************************99.********************* PP

                 HTTS-SSHHHHHHH.HHHHHHHHS-HHHHHHHHHHHHHHHH CS
        NusB  94 llylddvPakvaineavelakkygdeksakFvNgVLrkvar 134
                 l++   +P+kv+++ea++l  ++g ++++k++N+V++k+a+
  EGE23647.1 124 LKHSLHIPYKVVLDEAMKLNVHFGATDAHKLINAVMDKIAK 164
                 ***99*********************************986 PP

>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.15   9.2e+02       2      16 ..      19      33 ..      18      41 .. 0.81
   2 !   15.2   0.1   2.6e-06     0.016      13      49 ..      84     119 ..      82     122 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.15
                HHHHHHHHHHHHHHH CS
         HLH  2 raahnerErrRRdri 16
                +++h ++ + RR  +
  EGE23647.1 19 KTSHTAVRKARRFAV 33
                799********9765 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHHHHHHCSTCSTTSS-STHHHHHHHHHHHH CS
         HLH  13 RdriNsaleeLrellPslppskKlsKaeiLekAveYI 49 
                 +++i   ++eL +l+  ++ ++ lsK +i e+A+  I
  EGE23647.1  84 MRNIPAQIDELESLIV-SQLDRELSKLDIIEHAILLI 119
                 6788899*********.8***************9776 PP

>> CelTOS  Cell-traversal protein for ookinetes and sporozoites
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   1.1e-05     0.066      23      82 ..      85     145 ..      70     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
      CelTOS  23 adldskgdelvdliandlekelqknslvaasfLq.sgfdvkkkaKeiiKkvllevlksllp 82 
                 +++    del +li+++l +el k ++++ + L   ++++k+ +    K vl e++k  + 
  EGE23647.1  85 RNIPAQIDELESLIVSQLDRELSKLDIIEHAILLiGTYELKHSLHIPYKVVLDEAMKLNVH 145
                 5677889*****************99998665543889*******************8875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1349.70
//
Query:       EGE23648.1  [L=303]
Description: thiamine-monophosphate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-23   82.3   2.4    4.1e-23   81.9   0.6    2.1  2  AIRS      AIR synthase related protein, N-terminal domain
    3.4e-05   24.0   0.1    6.7e-05   23.1   0.1    1.5  1  AIRS_C    AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.6   4.5e-27   4.1e-23       1      94 []       6     118 ..       6     118 .. 0.94
   2 ?   -1.5   0.0      0.46   4.1e+03      14      36 ..     133     155 ..     125     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 4.5e-27
                 SSSE.........EEEEEEEEE.EECCTCCCC........HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.......HHHHHHHHHHHHHHHTT-EEEE CS
        AIRS   1 dDaa.........vvvttdshnrpvlvepvhf........iGakavavnlsDlaamGArPlalllslalp.......wleevvrglaeaaeelgvplvg 75 
                 dD+a         +v ++d     +lv+++hf        i++k+vavnlsDla+mGA+P a+l+ l+lp        +++++ gla+a+  +gv+l+g
  EGE23648.1   6 DDCAisnippnsqLVSCVD-----TLVAGRHFvhetsphaIAYKSVAVNLSDLASMGATPYAILVGLSLPksmanddFCQAFAGGLAAACTPFGVELIG 99 
                 89**655555554589999.....*************************************************************************** PP

                 EEEEEESSEEEEEEEEEEE CS
        AIRS  76 GdtsfsneptisvtavGlv 94 
                 Gdt++s+ +tisvta+G v
  EGE23648.1 100 GDTTSSPILTISVTALGFV 118
                 *******9*********86 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.46
                 .EECCTCCCCHHHHHHHHHHHHH CS
        AIRS  14 rpvlvepvhfiGakavavnlsDl 36 
                   v v+++ +++ +a++++l Dl
  EGE23648.1 133 DVVCVSGTVGLASLALHGILDDL 155
                 45566666678888888888887 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   7.5e-09   6.7e-05       2     101 ..     131     232 ..     131     288 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 7.5e-09
                 TTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTT.TSEHHHHHHHHHHHHHHHHHHHH...HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHH CS
      AIRS_C   2 pGdvliltgslGlggagtslkrkileeegldds.avqlgdvlleptliyvkralaal...kglvkaahDvTgGGLlgalaemapasgvgaeidldkvpi 96 
                 +Gdv+ + g+ Gl ++++  +   l+ +g   +  + l +  l + ++y ++  a+     g ++++ D+++ GL  +l  ++ as+vga+idld++p 
  EGE23648.1 131 VGDVVCVSGTVGLASLALHGILDDLHGDGHANRpPESLPEK-LRQAMQYPAPQVALGkrlIGFANSMIDISD-GLGQDLGHILTASNVGAVIDLDAIPS 227
                 69999999997777777655555555555443232222222.3346777777666666677889********.8*********************9998 PP

                 HHHHH CS
      AIRS_C  97 fdele 101
                  + l 
  EGE23648.1 228 DALLD 232
                 87664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2337.82
//
Query:       EGE23649.1  [L=678]
Description: hypothetical protein EA1_08437 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-28   99.7  14.5    2.7e-28   99.7  14.5    3.5  3  DUF262     Protein of unknown function DUF262
    1.7e-17   63.6   1.7    1.7e-17   63.6   1.7    2.7  2  DUF1524    Protein of unknown function (DUF1524)
  ------ inclusion threshold ------
      0.041   12.9   0.5       0.06   12.4   0.5    1.2  1  Ric8       Guanine nucleotide exchange factor synembryn
      0.077   13.1   0.1       0.23   11.6   0.1    1.8  1  EF-hand_2  EF hand
       0.26   11.6   2.1       0.29   11.4   0.1    2.1  2  MCM2_N     Mini-chromosome maintenance protein 2


Domain annotation for each model (and alignments):
>> DUF262  Protein of unknown function DUF262
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7  14.5   7.4e-32   2.7e-28       1     220 [.       7     251 ..       7     252 .. 0.63
   2 ?   -0.7   0.6      0.37   1.3e+03     130     212 ..     267     345 ..     253     374 .. 0.54
   3 ?   -6.0   8.3         5   1.8e+04     200     200 ..     483     483 ..     396     662 .. 0.66

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 7.4e-32
      DUF262   1 ledllskskrglriPdfQRpyvWeeeqveeLiedlla...lkgyplGsivlw.............skaadsageleviDGQQRltTltlllaa...... 77 
                 ++dl++++   +riP++QR+y+W++ q +++++d+     +k+++ G + l+                +++ + + ++DGQQRltT ++++ a      
  EGE23649.1   7 INDLFKNRI--FRIPNYQRGYAWQNPQLSDFWKDVIIlpqDKSHYTGVLSLKkienidekykderWLIEQGVTPFHIVDGQQRLTTCVIFIQAfieffe 103
                 789***998..************************99*********************999888744566699********************877766 PP

      DUF262  78 ....t...keesekriknleaeiek................ekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdlakeekrne 153
                     +   +++s +++k+++   ek                +++++ ++++  +   +    +q+                               + +
  EGE23649.1 104 eknpNiiiDDKSLSELKSYYLYQEKdnkiltaykfgyevdnPSFNYLKQKIFNS---QESGNVQE-------------------------------TFY 168
                 654414554444444444443333323333333311111222222222222111...11112222...............................222 PP

      DUF262 154 eknlikayevieeilksa................llsalktklslieieleseddedqayeiFerlNsrGvpLtasellkall 220
                   nl ka ++++e+++s                 +++ + + +++  +++ +++++  ++  Fe++N+rG++L++ ellk+++
  EGE23649.1 169 TLNLEKAKSFFKEEIESLfnkkndenseqngedsVIELFTKITQNFLFNIYEISNDFNVFVAFETMNNRGKKLSNLELLKNRI 251
                 22222222222222222222222223333344443333344567888888899999*************************97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.37
      DUF262 130 ekeelaelnsltkkdl.....akeekrneeknlikayevieeilksallsalktklslieieleseddedqayeiFerlNsrGvpLta 212
                 e+++l+++ + t++++      ++++  +++ ++++y +i+      +  + k   + i ++l    ++  a++i++    +G+ L++
  EGE23649.1 267 EENTLTDFVNETWSEIyyqlgRNKNNPLSDDDFLRNYWIIY------FHYTKKRGSDYIDYFLN---EKFTAEQIYDYNHGNGEGLDP 345
                 33344444444444443333433333333333333333333......22233445555555554...455567777666666666655 PP

  == domain 3  score: -6.0 bits;  conditional E-value: 5
      DUF262 200 F 200
                 F
  EGE23649.1 483 F 483
                 1 PP

>> DUF1524  Protein of unknown function (DUF1524)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.75   2.7e+03      13      46 ..     164     197 ..     156     205 .. 0.66
   2 !   63.6   1.7   4.9e-21   1.7e-17      24     138 ..     505     640 ..     488     641 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.75
     DUF1524  13 naklysssrkklryilakelesalreedeeegea 46 
                 ++++y+ + +k++ ++ +e+es ++++++e++e+
  EGE23649.1 164 QETFYTLNLEKAKSFFKEEIESLFNKKNDENSEQ 197
                 5677777777888888888885555555555553 PP

  == domain 2  score: 63.6 bits;  conditional E-value: 4.9e-21
     DUF1524  24 lryilakelesalree.deeegeakklt...........iEHilPqslae.kwegagqedeekreelvndlgNLtlltkslNsslsnkpfleKrdlykk 109
                 l+y+l+ e e++l+++  +e+ e  +             iEHi+Pq++++ +w++  + ++++r+ l n+lgNL+ l+ s+Nssl+n  f++K+++  +
  EGE23649.1 505 LHYFLY-EYEYSLFSNyGNEKIE-WS-LfvkpdgndkvsIEHIYPQNPKDeDWQDFINYSADERKLLQNSLGNLLPLSFSINSSLQNTCFKDKKNQKLD 600
                 679999.9999999775555555.33.248899999999***********88899999********************************999995555 PP

     DUF1524 110 ...........sslrlnrklaekdewdeeaiearqeaLak 138
                            +    + ++a+++ w+ ++i++r+ +L++
  EGE23649.1 601 akgnekrrgytQGSHCEIEVAKNEIWTADTIKQRGLKLLE 640
                 4566666666644555666779999*********999976 PP

>> Ric8  Guanine nucleotide exchange factor synembryn
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   1.7e-05      0.06      22     231 ..     181     401 ..     164     488 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
        Ric8  22 eaistLlklafdssstsaslekeseeevareAlrcLaNalllsekarqrlverlkggeekavellkkdksspadiefldsRllFLlTaleseirkelke 120
                 e+i+ L++     +++++s e++ e  v++   ++  N l++  +  + +    +     a+e +++  +  ++ e+l+ R+l+L+T+ +s+    + +
  EGE23649.1 181 EEIESLFNK----KNDENS-EQNGEDSVIELFTKITQNFLFNIYEISNDFNVF-V-----AFETMNNRGKKLSNLELLKNRILYLITLYDSH----VLS 264
                 355666555....333333.2233556667789999************98883.3.....68999999999******************666....456 PP

        Ric8 121 lveeesllaealeqilkrkakevsssdeaasslskeesealselLKllFnltlhypksvldeeea..........................eelsekla 193
                  +ee++ l++ ++++ ++   ++    +++++ls+       + L+  + + +hy k+  ++                              e+ +   
  EGE23649.1 265 KYEENT-LTDFVNETWSEIYYQLG--RNKNNPLSD------DDFLRNYWIIYFHYTKKRGSD--YidyflnekftaeqiydynhgngegldPEKLKDYL 352
                 666777.99999988888877333..222222222......345555555555555444333..12234444444444444444444444422233355 PP

        Ric8 194 rllppllrlllllpipspdpLkpplthlinaLlnlpl............e 231
                 ++l  l ++ + ++ p+++  +p     +n+L  l +            +
  EGE23649.1 353 NKLKLLSQHWYNIHFPNEN-YSPKERLWLNCLNRLGFmyfrplitvlflK 401
                 5555555566666666654.244555555666555555555555555550 PP

>> EF-hand_2  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.3e-05      0.23      67     110 ..     182     227 ..     148     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
   EF-hand_2  67 vLldlysale..kkksslgqvkvevcvdlllnwLlnvyDrkrkgki 110
                  +++l+++ +  +++++ +++ +e+++++++n+L n+y+ +++ ++
  EGE23649.1 182 EIESLFNKKNdeNSEQNGEDSVIELFTKITQNFLFNIYEISNDFNV 227
                 4788999988655666677789****************98887666 PP

>> MCM2_N  Mini-chromosome maintenance protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.1e-05      0.29       2      47 ..     453     500 ..     451     506 .. 0.77
   2 ?   -2.3   0.2       1.4     5e+03      14      40 ..     546     566 ..     534     570 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-05
      MCM2_N   2 deeaeveeediadldevaa..eeeedgeDLfndnledDyreneeqDrY 47 
                 d+e+++e+ d a +++ +   ++ +dg+DLf+ ++ +Dy + +++  Y
  EGE23649.1 453 DSENNIEKIDKALKEQLHRwfKKTDDGKDLFEPKYFNDYIQTRHLGFY 500
                 566777776666666554367899****************99988777 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
      MCM2_N  14 dldevaaeeeedgeDLfndnledDyre 40 
                  ++     ++ed +D +  n+ +D+r+
  EGE23649.1 546 PQN----PKDEDWQDFI--NYSADERK 566
                 333....5789999999..89999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1239  (0.0691059); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 5026.53
//
Query:       EGE23650.1  [L=201]
Description: phosphatidylglycerophosphatase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-42  142.6   5.8      1e-41  142.3   5.8    1.1  1  PgpA            Phosphatidylglycerophosphatase A
  ------ inclusion threshold ------
        8.7    6.6  13.0       0.79    9.9   6.9    2.3  2  Tr-sialidase_C  Trans-sialidase of Trypanosoma hydrophobic C-


Domain annotation for each model (and alignments):
>> PgpA  Phosphatidylglycerophosphatase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   5.8   1.1e-45     1e-41       3     142 ..      30     187 ..      28     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 142.3 bits;  conditional E-value: 1.1e-45
                 HHHHHHHTT......--HHHHHHHHHHHTT.HHHHH.HHHHHHHHHHHHHHHHHHHHHT-S-HHT-TT--HHHHTTHHHHH.................. CS
        PgpA   3 llatlfgsGllpvaPgtvgslaalllalllllleslslllllilllflvGiwackktekelgekDpgeiviDEvvgqwiallll............... 86 
                 +l +++g+Gl ++aPgt+g++  l++al +lll  +  +l+++++ +lvG ++c+kt+k +g++D+ +iv+DE+vg+wi ll+                
  EGE23650.1  30 WLGVGLGTGLPKKAPGTWGTVGGLMIALPMLLLGFW-GFLVVVVVGCLVGSYVCGKTSKLMGVHDDPHIVFDEWVGMWISLLPSvwllaqtqdtaktgl 127
                 678899************************888888.6666****************************************776455555555555444 PP

                 .........TTHHHHHHHHHHHHS--THHHHTSSS.-S---TTHHHHHHHHHHHHHHHHH CS
        PgpA  87 ....patllalllafilFrlfDivKpgpigwldrklkgglgvmlDDllAgiaaalvlali 142
                     p t l +++ f+lFr+fDi+Kp pi+w+d++++gg+g+++DD+lAg++a++ + ++
  EGE23650.1 128 eychPSTALLFIVPFVLFRFFDIMKPPPIKWVDKNVSGGFGILIDDVLAGVMAVIFIFML 187
                 44433366677999****************************************998765 PP

>> Tr-sialidase_C  Trans-sialidase of Trypanosoma hydrophobic C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.9   8.8e-05      0.79       2      22 ..      48      68 ..      48      70 .. 0.82
   2 ?   -0.6   0.4      0.17   1.5e+03       9      14 ..     109     116 ..     103     116 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 8.8e-05
  Tr-sialidase_C  2 GtvResg.lLPLLLLLGLWGfA 22
                    Gtv + + +LP  LLLG WGf 
      EGE23650.1 48 GTVGGLMiALP-MLLLGFWGFL 68
                    78855568999.*********5 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.17
  Tr-sialidase_C   9 lLPL..LL 14 
                     lLP+  LL
      EGE23650.1 109 LLPSvwLL 116
                     89998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1649.04
//
Query:       EGE23651.1  [L=224]
Description: type III restriction system methylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.02   13.9   0.0      0.026   13.5   0.0    1.2  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
      0.086   12.5   0.0       0.12   12.1   0.0    1.2  1  UPF0020          Putative RNA methylase family UPF0020
       0.14   12.5   0.0       0.36   11.1   0.0    1.7  1  DUF3725          Protein of unknown function (DUF3725)


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.4e-06     0.026     189     291 ..      35     138 ..      11     151 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-06
  tRNA_U5-meth_tr 189 kmleWalevtqeskgdllelycGnGnfslalarnfekvlatei.......akssveaaqyniaankidnvqiirlsaeeltealkkkrefrrlk 275
                       ml+ +   t++ ++ +le  cG Gnf   la+ +++ lat +       +k s + aq+  ++ +i  ++ i    e l++  ++ r  rrl 
       EGE23651.1  35 AMLDLVKIQTEQITSTFLEPACGTGNF---LAEILRRKLATALrlsqinkSKKSPKYAQFHYEKHAICAISSI-YGIELLADNCDECR--RRLL 122
                      588888888999999************...8999999999987222222234444455555555555555544.24466666666666..5788 PP

  tRNA_U5-meth_tr 276 gidlksyafetifvdP 291
                      ++ l++y+ +    dP
       EGE23651.1 123 DLFLDHYQSHFKQTDP 138
                      8888888766555555 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     2e-05      0.12      20      85 ..      39     110 ..      31     144 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2e-05
                 HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS........HHHHHHHHHH.HH--EEEEES- CS
     UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle........lkaeaeeear.aelklygsDld 85 
                 lv++   + ++++l+P CG+G +l E   l ++ a  +lr   ++        ++ + e++a  a  ++yg++l 
  EGE23651.1  39 LVKIQTEQITSTFLEPACGTGNFLAEI--LRRKLA-TALRLSQINkskkspkyAQFHYEKHAIcAISSIYGIELL 110
                 333444455689************884..333333.233333333232444333333333333333336666655 PP

>> DUF3725  Protein of unknown function (DUF3725)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.1e-05      0.36      13      51 ..      36      74 ..      32      81 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.1e-05
     DUF3725 13 ilqLvvignaeigreFLEgnrfvRanileivrktlvgrL 51
                +l Lv i +++i+ +FLE   +  + + ei+r+ l ++L
  EGE23651.1 36 MLDLVKIQTEQITSTFLEPACGTGNFLAEILRRKLATAL 74
                689*******************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1820.22
//
Query:       EGE23652.1  [L=158]
Description: site-specific DNA-methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1196.56
//
Query:       EGE23653.1  [L=369]
Description: putative type II restriction endonuclease [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-05   24.4   0.0    8.2e-05   22.7   0.0    2.0  1  HNH_2     HNH endonuclease


Domain annotation for each model (and alignments):
>> HNH_2  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.6e-09   8.2e-05       1      71 [.     257     312 ..     257     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.6e-09
       HNH_2   1 CvitgiddpslleaAHIiPwslssffndlilnrfeigrillekgstidspsNgllLspdiHklFdqflfaf 71 
                 C +t i+d+ ll a+HI P          +  ++      +++  +  +  Ngl  +p+ ++lFd+++++f
  EGE23653.1 257 CPFTLITDELLLRASHIKP----------YAVCM-----AENNEKEALDYLNGLAFTPTYDWLFDRGYITF 312
                 788888888678*******..........66666.....6677788999********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2929.31
//
Query:       EGE23654.1  [L=408]
Description: DNA-cytosine methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-82  276.3   1.4      5e-82  275.9   1.4    1.1  1  DNA_methylase  C-5 cytosine-specific DNA methylase


Domain annotation for each model (and alignments):
>> DNA_methylase  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.9   1.4   2.8e-86     5e-82       5     333 ..      38     401 ..      34     402 .. 0.77

  Alignments for each domain:
  == domain 1  score: 275.9 bits;  conditional E-value: 2.8e-86
                    EES-TT-HHHHHHHHTT..-EEEEEEE--TTTHHHHHHH-....-SEEEES-TTTS-GS--.-SEEEE---GGGTECTSEE--TTSGGGHHHHHHH CS
  DNA_methylase   5 dLfaGiGGfrlgleaag..fecvaaseidkkaaktYeanfk...kvsigDitkidkkklpediDlLvgGfPCqpfSvaGkqkgfedtrgtLffeii 95 
                      f+GiG+++ +l++ +   ++v+a++id+ ++k Y an++   k  + Dit++d + +++++D+LvgG PCq+fS  Gk+ g edtrgtLf++++
     EGE23654.1  38 TVFSGIGAIEQALKRLNlnHSIVFANDIDNFVKKSYLANYEldeKNWHSDITTFDATPYKNQVDILVGGSPCQAFSMVGKRLGLEDTRGTLFYDFA 133
                    57**************98899*********************988899************99********************************** PP

                    HHHHHH--SEEEEEEEGGGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEGGGTT-SB--EEEEEEEEEGGG----------SS---GGG.....TSG CS
  DNA_methylase  96 riikekkPkvfllENVkgLlkhdkgktlkvilekleelGYevsykllnasdyGvpQnReRvfivgirkdlelnvlvkvkefrfpkkkdleasktlr 191
                    r++ e++Pk f+ ENVkgLl+hd+g+t++v+ + +++lGY+++ +lln++dyG+pQ ReR+f++g++++       + + f+fp++   e   t++
     EGE23654.1 134 RVVSETQPKLFIYENVKGLLNHDNGNTWQVVQDVFNSLGYTLYSQLLNSKDYGIPQHRERIFVIGFKNK-------PKNGFEFPQPI--ELEYTMQ 220
                    ********************************************************************6.......45677777775..4778888 PP

                    GGTTS-EEBTTTB--GGGSSSTT-EE--.......S---H..HHTS--..........................B--TTS...-B----S-STT-. CS
  DNA_methylase 192 dlleekseldeektalsdklvekeekikkttkaseegypk..elsrnr..........................idkveelkglsatrrksgrge. 258
                    d le++   ++ k+ l++k ++   ++k+++k+  ++  +   + + +                          +++vee ++ls++++++     
     EGE23654.1 221 DFLEDY---TDSKYFLKEKGIKFVTSSKNRQKRYTQINGDimLCQKANqqfnwhgdfifeslenesnfdefvfnVNDVEEKYYLSKKVKDYVLASg 313
                    888885...444554444444444444443333333333332222222445556666666666667777776664444444444444444443225 PP

                    ................-B-TTS---EEEETTEEE--T........TTGGG--B-BHHHHHHHHT--TT-----SBHHHHHHHHTS--HHHHHHHHH CS
  DNA_methylase 259 ................klekelaeagklqknkerfkp.......viekkriRrLtprEaarlqGfPddfefgskksaaykqiGnsVpvpvieaiak 331
                                    +l ++++++           +         ++ riR+LtprE+ rl+Gf ddf+++++++++y+q Gns++v+v+ ai+k
     EGE23654.1 314 tktfktstetdlsiarPLLQSMHKMH----------RagvdnyvTHNQGRIRKLTPRECLRLMGFRDDFKIAVSDTQMYRQAGNSIVVDVLIAILK 399
                    55677755555544433333333333..........1344444456789**********************************************9 PP

                    HH CS
  DNA_methylase 332 ei 333
                    ++
     EGE23654.1 400 QL 401
                    96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2907.61
//
Query:       EGE23655.1  [L=575]
Description: putative restriction enzyme [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.073   12.3   5.1       0.11   11.6   5.1    1.2  1  ISG65-75       Invariant surface glycoprotein
       0.11   12.3   0.8       0.71    9.6   0.0    2.3  2  Iron_permease  Low affinity iron permease


Domain annotation for each model (and alignments):
>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.1   1.3e-05      0.11      45     117 ..     406     473 ..     403     486 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
    ISG65-75  45 dkvreetadyllketkdklayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkare 117
                 + +++e a + l+++++  +++++++e v +++ek+++l+e+ak++g+l+++d++ l  +    +++ k+ r+
  EGE23655.1 406 NLMSNEDAMNALNNIEE-FRNLNDDIEVVINRSEKIKGLKEKAKNDGELSKEDKKTLSDE----EKQQKSLRK 473
                 56888999999999986.589********************************6665433....333333333 PP

>> Iron_permease  Low affinity iron permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0     8e-05      0.71      71     107 ..      18      54 ..      11      61 .. 0.85
   2 ?   -0.4   0.8       0.1   9.2e+02      73     122 ..     402     452 ..     391     460 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 8e-05
  Iron_permease  71 iqlkLdeLirasksaknrlidleelteeeleelakey 107
                    + +k deLi ++++ ++ +i++e+++e+el   a++y
     EGE23655.1  18 LFAKGDELIETQNDYQDMEIQIENFDENELPITADHY 54 
                    556889************************9888877 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.1
  Iron_permease  73 lkLdeLirasksaknrlidleelt..eeeleelakeyerlaeaakeeeevkk 122
                    + L++L+  ++ a n+l ++ee+   ++++e + ++ e+++  ++++++  +
     EGE23655.1 402 ITLKNLMSNED-AMNALNNIEEFRnlNDDIEVVINRSEKIKGLKEKAKNDGE 452
                    45777766555.9999999999873347888888877777766666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1241  (0.0692175); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4148.09
//
Query:       EGE23656.1  [L=310]
Description: Hsp33 protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-69  232.8   0.0    5.2e-69  232.6   0.0    1.0  1  HSP33     Hsp33 protein


Domain annotation for each model (and alignments):
>> HSP33  Hsp33 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.6   0.0   2.9e-73   5.2e-69       1     267 []      12     293 ..      12     293 .. 0.91

  Alignments for each domain:
  == domain 1  score: 232.6 bits;  conditional E-value: 2.9e-73
                 .EEEEEEETTTTEEEEEEE-HHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHCCS-.T-EEEEEEE...ESSTT-EEEEEEETTSEEEEEES......- CS
       HSP33   1 DkllrflledgsvRgrlvrltelveealkrhdlppavtallgealaaaallastlkfegrltlqik...gdgplgllvaeadsdgevRgyar......n 90 
                 D+ +rf+++ + vRg +v+lt++++++++++d+p a +allge+l+ a+ll stlk +g+l++q++   +d  l++++ae+d++g+vR++a       n
  EGE23656.1  12 DYRQRFFIDGSVVRGDVVKLTDAYQTVITQKDYPVALKALLGEMLVSASLLISTLKIDGKLSIQLQssdSDARLNWAMAECDHTGSVRALAGfddtnqN 110
                 7889*************************************************************96333588999****************8776432 PP

                 TT---..............HH-SCEEEEE..EE.TC..EEEEEEE-SSSSSHHHHHHHHHHCC-S-EEEEEEEEEETSCEEEEEEEEEEESTTTSCCHH CS
       HSP33  91 pavelp.............avgkGvlavt..kdqkegepyqGivelvsgeiaedlehYfaqSEQiptavalavlvdkrsvkaagGlllQlLPgadeeli 174
                 +    +              +gkGvl ++  +d+  ge yqGive vs+++ e+l+hY +qS Qipt ++la++++ +    agG+l+QlLP++d ++ 
  EGE23656.1 111 Q----TvwqhlksadeafgELGKGVLFISihPDN--GEAYQGIVERVSDSLGECLAHYQRQSAQIPTIIKLATNET-T----AGGILVQLLPQSDADKE 198
                 2....13455679999878778*******75545..56************************************88.7....*************8888 PP

                 HHHH..HHHCCS-.-HHH.HC.CC-HHHHHHHHHHSTS--EEEEEEE-EE-----HHHHHHHHHTT-CHHHHHHHHC.CTEEEEE-TTT--EEEEE CS
       HSP33 175 edle..erlkalaatlteeelleelpaeellerlfheedvevleekpvefkCrCsrervekaLkslgkeeleeilee.dgkievtCefCgkkYrfd 267
                 +d +  +rl+al++tl+++el ++l+a+e+l+rl+heedv + + +p++f C+Cs ++ e+a+ +lg +e+++  +   g ++++C fCg++Yrfd
  EGE23656.1 199 ADPDlwDRLTALTDTLKTDEL-TDLDANEILYRLYHEEDVVLPSLTPLQFACTCSSQKSEGAILQLGYDEAKQAAAAqGGVLTLDCGFCGREYRFD 293
                 888899***************.59************************************************9966627999*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2265.01
//
Query:       EGE23657.1  [L=612]
Description: glucosamine--fructose-6-phosphate aminotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-55  185.1   0.7    2.4e-27   95.3   0.0    2.3  2  SIS       SIS domain
    7.4e-19   68.3   0.2    1.3e-18   67.5   0.2    1.4  1  GATase_6  Glutamine amidotransferase domain
    3.9e-13   49.4   0.0    6.6e-13   48.6   0.0    1.4  1  GATase_7  Glutamine amidotransferase domain
  ------ inclusion threshold ------
      0.018   13.9   0.2      0.043   12.7   0.3    1.5  2  GATase_4  Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.7   1.2e-28   5.4e-25       2     125 ..     292     415 ..     291     421 .. 0.96
   2 !   95.3   0.0   5.4e-31   2.4e-27       2     130 ..     465     594 ..     464     595 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 1.2e-28
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEE.EEEESSTTSHHHHHSS CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergaki.iaITdskgsplaread 99 
                 +ak ++i +l++Gtsy +a+ ++++le+i++i ++ve ase++++     d+d lvi is+sget d+ +a+++a ++g++  ++I++  +s+l r ++
  EGE23657.1 292 FAKIQSIKILACGTSYYAALTGKHYLESIAKIRCDVEIASEYRYR-DVISDPDELVITISQSGETLDTMEALKYAMAQGHRYsLSICNVMESALPRTST 389
                 678899***************************************.9999*****************************9999**************** PP

                 EEEEEEEECHCSSSHCHHHHHHHHHH CS
         SIS 100 lalyinaepetlvastksltaqlaal 125
                 la+ ++a++e++vastk++t+ql++l
  EGE23657.1 390 LAIFTRAGAEIGVASTKAFTTQLVVL 415
                 ***********************987 PP

  == domain 2  score: 95.3 bits;  conditional E-value: 5.4e-31
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHH.HHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaae.lakergakiiaITdskgsplaread 99 
                 +a++ + ++lG+G +y+ia+e+alkl+e+++i++e+++a+elkhg+lal+de+++v++is+++   d+v+a+  ++++rg+++ ++ d +++  a e  
  EGE23657.1 465 FANKPSALFLGRGIHYPIALEGALKLKELTYIHAEAYPAGELKHGPLALVDENMPVVVISPNDGLLDKVKANMqEVSARGGELFVLSDLDSDYTASEG- 562
                 6788899*****************************************************************99************************. PP

                 EEEEEEEECHC..SSSHCHHHHHHHHHHHHHHH CS
         SIS 100 lalyinaepet..lvastksltaqlaaldalav 130
                  + +i++++++  l +++ ++++ql+a+++++v
  EGE23657.1 563 -IHIIRTPRHIgtLSPIVHTIPVQLLAYHVALV 594
                 .667777777777****************9987 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.2   2.9e-22   1.3e-18      13     134 .]      63     195 ..      31     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 2.9e-22
    GATase_6  13 e....valaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevlla.lleelG.........eevl.erlrGmf 96 
                 +    ++++H+R+a++g  ++  a+P   ++g +++vhNG i+n+++ r +l+    ++f+s++Dtev+++ +++e+           +++ +r+ G++
  EGE23657.1  63 QihglTGIGHTRWATHGGVTKPNAHPH-ISAGLISVVHNGIIENFETERTRLQH-LDYEFESQTDTEVIAHsVHQEYTtnggdlyhaVQTAcSRFHGAY 159
                 0444489***********977777**9.9****************999999998.9***************7775555555699888444449****** PP

    GATase_6  97 afaiwdk.rentlilardrlgvkplyyavdesglafase 134
                 a+a++ + ++n++++a  r+g  pl +a  ++ + +as+
  EGE23657.1 160 AIAVIANdAPNQMVIA--RMG-CPLLVAFGDNEVFVASD 195
                 *******9*******9..999.99999999999999985 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   1.5e-16   6.6e-13      15     121 ..      88     199 ..      72     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1.5e-16
    GATase_7  15 PmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllallea..........ewgeealerlnGmfAfaiwdeeek.rlllaRDrlGikPL 102
                 P +s   g + +v+nG i N++  r +L++ +++f++++Dtev+++ +++          + ++ a++r++G +A+a++ ++   ++++aR   G  PL
  EGE23657.1  88 PHIS--AGLISVVHNGIIENFETERTRLQHLDYEFESQTDTEVIAHSVHQeyttnggdlyHAVQTACSRFHGAYAIAVIANDAPnQMVIARM--G-CPL 181
                 5552..57789*************************************999*********9***************9997655439999986..5.799 PP

    GATase_7 103 yygedkgdallfaSelkal 121
                  ++  + +++++aS ++a+
  EGE23657.1 182 LVAFGD-NEVFVASDVSAV 199
                 999996.79*****99886 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   9.6e-06     0.043      63     133 ..      58     129 ..      34     160 .. 0.83
   2 ?   -3.5   0.0      0.83   3.7e+03     156     184 ..     530     558 ..     524     571 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.6e-06
    GATase_4  63 lvreypiksknvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpkl....egrfePvGsTDsEla 133
                   ++ +i+    + H R at+G v++ n+hp +       +   HnG +++++ ++    +  +e   +TD+E++
  EGE23657.1  58 AAKQKQIHGLTGIGHTRWATHGGVTKPNAHPHIS---AGLISVVHNGIIENFETERtrlqHLDYEFESQTDTEVI 129
                 5678889999*********************875...4456788*****99988876665556777788888887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.83
    GATase_4 156 eralaelakeiaelGvfnlllsdgralfa 184
                  + +++ ++e++++G   ++lsd +  ++
  EGE23657.1 530 LDKVKANMQEVSARGGELFVLSDLDSDYT 558
                 55677788999999999999999776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4304.75
//
Query:       EGE23658.1  [L=356]
Description: UDP-glucose 4-epimerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-57  195.7   0.0    1.5e-57  195.5   0.0    1.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.3e-48  165.6   0.0    1.7e-48  165.2   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    4.4e-16   58.9   0.0      3e-15   56.2   0.0    1.9  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    4.5e-15   55.4   0.3    1.1e-14   54.1   0.1    1.6  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.1e-09   36.9   0.0    3.1e-09   36.4   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    2.2e-06   27.3   0.0    7.2e-06   25.6   0.0    1.9  1  adh_short        short chain dehydrogenase
    2.3e-06   27.6   0.0    4.3e-06   26.7   0.0    1.5  1  NAD_binding_10   NAD(P)H-binding
    1.4e-05   25.1   0.0    2.5e-05   24.3   0.0    1.3  1  KR               KR domain
    4.5e-05   22.7   0.3     0.0011   18.2   0.4    2.4  1  NAD_binding_4    Male sterility protein
      0.002   17.8   0.3      0.016   14.8   0.2    2.1  2  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   0.0   8.4e-61   1.5e-57       1     331 [.      20     342 ..      20     343 .. 0.85

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 8.4e-61
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-..TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssf..ntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfek 94 
                    L+TG+aG+iGs+++  L++ g+  ++ +++s+s   +++r+e++         +++++++gD+ D++ l+ +++ +q+ +v+++A+ ++V++s ++
     EGE23658.1  20 LVTGGAGYIGSHTLIELIQAGFVPVVYDNLSNSSfvAVQRVEQIV-------GKHIEFIQGDVLDKTHLDAVFKAHQFFAVVHFAGLKAVGESTKN 108
                    9*********************99988887655311455555554.......35689*************************************** PP

                    HHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---.EEEEEE-E....EES CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglf.avngilfn....hes 185
                    P +++++nv+Gtl LLe++ ++g++ +   +++S+++vYG+ ++ p+tE+ p   +sPY+ +Kl+ ++i ++  +a + + +v  ++fn    hes
     EGE23658.1 109 PLKYYQNNVVGTLSLLELMAKYGVK-N--CVFSSSATVYGSSNRLPITEDMPRFCTSPYGQSKLMVEHILEDLVNADDTWnVVCLRYFNpigaHES 201
                    ***********************96.3..566*******************************************9987538889*********** PP

                    TTS-TT..SCCCHHHHHHHHHHTTS-C-EEC.TTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH..... CS
  GDP_Man_Dehyd 186 prrget..fvtrkitravarialgkqevlyl.GnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkge. 277
                     r ge+   + ++++++++++a+g+ + l + Gn +++ d + v+Dy+++++l   +++           + v++ v + f+ +    + +g+++ 
     EGE23658.1 202 GRIGEDptDIPNNLMPYISQVAVGNLKQLSVfGNDYETPDGTGVRDYIHVVDL--AKGHVAALH------YLVGQSVGIGFCPINLG-TGQGTSVl 288
                    ***996336889*************7777666********************8..555543333......55555555555555543.33344441 PP

                    ........TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 278 eevgrakesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvre 331
                    + +++ +++  + v++    +r g+  ++++ a+kak  L+W+++ ++e ++ +
     EGE23658.1 289 QLIKAFESNTGQSVPYVITSRRTGDIAAYYASADKAKAILNWTAELDIERMCVD 342
                    34556667777799999*********************************9976 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.2   0.0   9.3e-52   1.7e-48       1     228 [.      19     264 ..      19     273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 165.2 bits;  conditional E-value: 9.3e-52
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknl 92 
                 ilVtG++G+iGs+++ +l ++g   ++ d+ls++s  a ++         e++++d++d++ l+++fk +q+ av+h+A+ + v++s ++p +++++n+
  EGE23658.1  19 ILVTGGAGYIGSHTLIELIQAGFVPVVYDNLSNSSFVAVQRVEqivgkhiEFIQGDVLDKTHLDAVFKAHQFFAVVHFAGLKAVGESTKNPLKYYQNNV 117
                 8*********************99999999988877776666688****************************************************** PP

                 HHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTT.......S-TTSTT CS
   Epimerase  93 qgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGpr.......ngegevs 183
                 +gtl lle + k+gvk+ +f sS++vYG +++ p +e++   p   +spY+ +Kl++e+++e++ ++   +n+++lr+fn +G++       ++++ ++
  EGE23658.1 118 VGTLSLLELMAKYGVKNCVFSSSATVYGSSNRLPITEDM---PRFCTSPYGQSKLMVEHILEDLVNADdTWNVVCLRYFNPIGAHesgrigeDPTDIPN 213
                 **********************************99999...8889*****************9998879******************99944445599 PP

                 SHHHHHHHHHHTTS.SSEEEET......TST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 184 rvipalirkilegk.qevtllg......dgtalRdflyveDvaeaillvleh 228
                 +++p +i++++ g  +++ ++g      dgt +Rd+++v D+a++++++l  
  EGE23658.1 214 NLMP-YISQVAVGNlKQLSVFGndyetpDGTGVRDYIHVVDLAKGHVAALHY 264
                 9999.88889998889********************************9975 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   1.6e-18     3e-15       1     170 [.      19     194 ..      19     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 1.6e-18
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      +lvtG++G iGs+ + ++++     ++  + +  +  ++++    ++  k++++    + gdv dk++l+ ++++++  +v+h A lK V    
       EGE23658.1  19 ILVTGGAGYIGSHTLIELIQAGFVPVVYDNLSNSSFVAVQRVE--QIVGKHIEF----IQGDVLDKTHLDAVFKAHQFFAVVHFAGLKAVGEST 106
                      89*******************9999988888888888888764..455556654....59********************************** PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGSS-..............-SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-E CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliStDKAvnP..............tnvmGatKrlaekllqalakeseekktkfvvvRfGN 170
                      +npl+  ++Nv+gt +++e   ++gvk++v+ S+     +              t+ +G +K++ e +l  l +    ++ ++v+ R+ N
       EGE23658.1 107 KNPLKYYQNNVVGTLSLLELMAKYGVKNCVFSSSATVYGSsnrlpitedmprfcTSPYGQSKLMVEHILEDLVNAD--DTWNVVCLRYFN 194
                      ******************************9997655443000001111111114455666666666665555554..445666666666 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.1   6.3e-18   1.1e-14       1     156 [.      20     174 ..      20     192 .. 0.77
   2 ?   -1.5   0.0      0.57     1e+03     203     233 ..     236     266 ..     220     270 .. 0.77

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 6.3e-18
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespell..eelskvnvkk....viegDvtdkdkleealegvd..vvihlaslvdvag.kltedeimk 90 
                 +vtGgaG++G++   eL++++ +  v v+D   +++    ++++++        +i+gDv+dk +l+++ +  +  +v+h a+l  v   + +  ++++
  EGE23658.1  20 LVTGGAGYIGSHTLIELIQAGFVP-V-VYDNLSNSSFVavQRVEQIV--GkhieFIQGDVLDKTHLDAVFKAHQffAVVHFAGLKAVGEsTKNPLKYYQ 114
                 69*******************644.3.57744444433002333332..13356***************987663379*********985666779*** PP

   3Beta_HSD  91 vnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEkl 156
                  nv GT ++le   k gv+  v+ Ssa v g  s+  +i+   E++  +   +++y +sK + E++
  EGE23658.1 115 NNVVGTLSLLELMAKYGVKNCVFSSSATVYGS-SNRLPIT---EDM--PRFCTSPYGQSKLMVEHI 174
                 *****************************999.6666666...555..455678899999888876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.57
   3Beta_HSD 203 lfkigdeevlsdrvYvgNvawahilAaralq 233
                  +++ d   + d++ v  +a+ h+ A ++l 
  EGE23658.1 236 DYETPDGTGVRDYIHVVDLAKGHVAALHYLV 266
                 5677778888999999999999999999886 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.7e-12   3.1e-09       2     138 ..      18     177 ..      17     191 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.7e-12
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaay 75 
                    kilvtG+ G +Gs+   +l ++g+  +  ++                       + d+ d++++++++k+++  +vv+ A  +av +  +++ + y
     EGE23658.1  18 KILVTGGAGYIGSHTLIELIQAGFVPVVYDNLsnssfvavqrveqivgkhiefiQGDVLDKTHLDAVFKAHQFFAVVHFAGLKAVGESTKNPLKYY 113
                    79**********9988888878866665544467899999999***************************************************** PP

                    HHHTHHHHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  76 avnaeavealAeaaaavgal.LihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla 138
                    + n+ ++  l e+ a++g++  ++ S+  V+  ++  p +ed +    + YG++Kl  E+  ++
     EGE23658.1 114 QNNVVGTLSLLELMAKYGVKnCVFSSSATVYGSSNRLPITEDMPRFCTSPYGQSKLMVEHILED 177
                    ******************964899999******************************9998765 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     4e-09   7.2e-06       1     122 [.      17     130 ..      17     191 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4e-09
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 k +lvtG+++ IG  +  el+++G+  vv+d+ ++    +++ +++  g+++ +iq+Dv d++ ++a++++      +  ++v+ AG++ +g+    s 
  EGE23658.1  17 KKILVTGGAGYIGSHTLIELIQAGFVPVVYDNLSNSSFVAVQRVEQIvGKHIEFIQGDVLDKTHLDAVFKAH-----QFFAVVHFAGLKAVGE----ST 106
                 689********************************9999*******9*******************999875.....4555666666643333....23 PP

                 HHHHHHHHHHTHHHHHHHHHHHHH CS
   adh_short  99 eewervievNltgvflltravlpa 122
                 ++  ++++ N++g+++l ++++++
  EGE23658.1 107 KNPLKYYQNNVVGTLSLLELMAKY 130
                 444555666666666666665555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.4e-09   4.3e-06       1     140 [.      23     187 ..      23     222 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.4e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT........HHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-S..EE.EES-....--TCC...HHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn........peklaeleaeeglevvegdvtdvedlaealkgad..aV.vsal....ggggk...deeg 77 
                     G+ G +G++ + el+++g + v ++  n         ++++++   +++e ++gdv+d+  l +++k ++  aV  +a+    g   +       
      EGE23658.1  23 GGAGYIGSHTLIELIQAG-F-VPVVYDNlsnssfvaVQRVEQIV-GKHIEFIQGDVLDKTHLDAVFKAHQffAVvHFAGlkavGE--StknP--L 110
                     899**************6.5.44555662222222223444443.489*********************9885514555665422..12230..1 PP

                     .........HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHH....CCHHHHHHHHHHHHHHHH...SSSEEEE CS
  NAD_binding_10  78 .........aknivdaakeagvkRfvlvsaigvgdevpgefgewnke....llkaylaakraaeellra...sgldwTi 140
                              + ++++ + + gvk  v+ s++ v+ ++++ + +++++      ++y + k   e++l++    + +w +
      EGE23658.1 111 kyyqnnvvgTLSLLELMAKYGVKNCVFSSSATVYGSSNR-L-PITEDmprfCTSPYGQSKLMVEHILEDlvnADDTWNV 187
                     4455556789999*********************75443.2.2333311113456667777777777664434444555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.4e-08   2.5e-05       4     145 ..      20     148 ..      18     151 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.4e-08
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 l+tGG+G +G ++   l++ g   +v+   s    ++s   ++++e+  g ++e+++ Dv dk+++ a++++ +        v+h Ag+    ++ e t
  EGE23658.1  20 LVTGGAGYIGSHTLIELIQAGFVPVVYDNLS----NSSFVAVQRVEQIvGKHIEFIQGDVLDKTHLDAVFKAHQ-----FFAVVHFAGLK---AVGEST 106
                 9***********************9997776....3344457777776699*******************9986.....679******85...555666 PP

                 HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT CS
          KR 102 aedleqvlapKvkGawnLhelledesldffvlfSSiagllgsag 145
                 ++ l + ++  v G+  L el+++  ++  v fSS a+++gs  
  EGE23658.1 107 KNPL-KYYQNNVVGTLSLLELMAKYGVKNCV-FSSSATVYGSSN 148
                 6655.568889************98888865.788888999865 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.4     6e-07    0.0011      59     192 ..      65     180 ..      21     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6e-07
                    TTTEEEEE--TTSGGGG--HHHHHHH..HHH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--S CS
  NAD_binding_4  59 aerikvveGDlseprlGLseedlqel..aeevdviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregevee 149
                     + i++++GD+ +      +++l+ +  a++  +++h a+   + e++k+    ++ Nv Gt  +lel +k   +   ++ S+a+v+g +++    
     EGE23658.1  65 GKHIEFIQGDVLD------KTHLDAVfkAHQFFAVVHFAGLKAVGESTKNplkYYQNNVVGTLSLLELMAKYGVK-NCVFSSSATVYGSSNR---- 149
                    4556666666533......33333333367888999**9999999999985557889*************99888.99999*****999994.... PP

                    SS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHH CS
  NAD_binding_4 150 kvyeegekeekldederaklkglpntYeqsKalaEklvrearr 192
                                   +++  + ++  Y qsK + E+++++  +
     EGE23658.1 150 ------------LPITEDMPRFCTSPYGQSKLMVEHILEDLVN 180
                    ............4578888899999************998764 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   8.8e-06     0.016       1     103 [.      19     141 ..      19     154 .. 0.82
   2 ?    0.5   0.0       0.2   3.7e+02     212     232 ..     285     305 ..     279     306 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.8e-06
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S......-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG................S- CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdt......kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy................sk 77 
                 Ilv+G++G++G++    l++ag+ v ++  ++        ++++++  +  e+++gd+ dk  l++++k ++ +f+v+ f+                ++
  EGE23658.1  19 ILVTGGAGYIGSHTLIELIQAGF-VPVVYDNLsnssfvAVQRVEQIVGKHIEFIQGDVLDKTHLDAVFK-AHQFFAVVHFAglkavgestknplkyyQN 115
                 9*********************9.556666666777777777888888999*************98886.78899999988888888888888888777 PP

                 HHHHHHHHHHHHHHHS-SEEEEEE-- CS
        NmrA  78 eiedgkklvdAakeaGvkhfiySslg 103
                 ++     l +  ++ Gvk+ ++Ss +
  EGE23658.1 116 NVVGTLSLLELMAKYGVKNCVFSSSA 141
                 88888888888888888888888865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.2
                 E-HHHHHHHHHHHHTS-EEEE CS
        NmrA 212 lsgneivelfekkigktvkYt 232
                  s+ +++++fe ++g++v Y+
  EGE23658.1 285 TSVLQLIKAFESNTGQSVPYV 305
                 57889*************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2606.36
//
Query:       EGE23659.1  [L=152]
Description: hypothetical protein EA1_08487 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1208.27
//
Query:       EGE23660.1  [L=170]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   14.9   0.2      0.024   14.5   0.2    1.3  1  DUF4493   Domain of unknown function (DUF4493)


Domain annotation for each model (and alignments):
>> DUF4493  Domain of unknown function (DUF4493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   1.3e-06     0.024      30      73 ..      69     119 ..      25     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-06
     DUF4493  30 e......ftveIydskg.egevrsyatyaelpeaieLpvGtYtvkaesgds 73 
                 +      + v+I ++   ++e++sy        +++Lp+G+Y+vk ++gd+
  EGE23660.1  69 KtnsgshYWVKIVNAYDeREELVSYFIRGGETLDVTLPAGSYVVKYTYGDT 119
                 0444556889995555555888888888888888***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1340.62
//
Query:       EGE23661.1  [L=42]
Description: hypothetical protein EA1_08497 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 348.94
//
Query:       EGE23662.1  [L=81]
Description: hypothetical protein EA1_08502 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 676.88
//
Query:       EGE23663.1  [L=422]
Description: UDPglucose 6-dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-22   77.2   0.0    1.6e-21   76.3   0.0    1.4  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,
  ------ inclusion threshold ------
      0.017   15.5   0.0      0.052   14.0   0.0    1.9  2  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   1.7e-25   1.6e-21       4      93 ..     189     278 ..     187     279 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 1.7e-25
  UDPG_MGDP_dh   4 EliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaeelgleaelleavrevNe 93 
                   E+++ +  a+lat++sf+Ne+a+l+++ g+++++V +++++d rig+++l++g+G+GG+ lp++++ L+++ +++ ++++l++av ++N+
    EGE23663.1 189 EFARSTLMAMLATRLSFMNEMARLADNQGVNIKSVERIIAQDGRIGSAYLSAGWGFGGKTLPRELELLMDKFKQNRVDTSLISAVSHINN 278
                   78888889*********************************************************************************7 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.5   1.4e+04       8      24 ..      86     102 ..      84     104 .. 0.82
   2 ?   14.0   0.0   5.8e-06     0.052       2     104 ..     303     402 ..     302     403 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.5
                     STT-S--TT-HHHHHHH CS
  UDPG_MGDP_dh_C   8 KkdtdDlReSpaldiie 24 
                       d+dD+  S ++++++
      EGE23663.1  86 LDDVDDITLSHIIHVLD 102
                     57999999999998875 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.8e-06
                     EE-SSSSTT-S--TT-HHHHHHHHHHHCTSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCCSS-EE CS
  UDPG_MGDP_dh_C   2 ilGlafKkdtdDlReSpaldiieeLleegaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehdefkeldlaklkelmkpavv 96 
                     i+G  ++++   + +S++  +ie L ++g+   ++  ++  e ++ ++++  ++++d++++ l +ada+ i+ +++ +++ d++ l++   +  +
      EGE23663.1 303 IWGAGYRNGASRMINSAIHPLIELLWSYGICTLVFAHNTAFEMQSTYGDHPLLRLTDDPYQDLVQADALFII-NWSLLTKPDIHVLNQ--INIAI 394
                     9*****************************9999988888888888999999****************9886.799999999877766..56678 PP

                     EESSS-CC CS
  UDPG_MGDP_dh_C  97 fDgrnvld 104
                     fD++nvld
      EGE23663.1 395 FDAKNVLD 402
                     99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3072.40
//
Query:       EGE23664.1  [L=542]
Description: glucose-6-phosphate isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-178  593.9   0.0   2.4e-178  593.7   0.0    1.0  1  PGI       Phosphoglucose isomerase


Domain annotation for each model (and alignments):
>> PGI  Phosphoglucose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  593.7   0.0  1.3e-182  2.4e-178       1     486 []      41     531 ..      41     531 .. 0.96

  Alignments for each domain:
  == domain 1  score: 593.7 bits;  conditional E-value: 1.3e-182
                 E-TTSS--HHHHHHHHHHHHHTTHHHHHHHHHTT---BTTTTB---HHHHT-TT----EETTEESHHHHHHHHHHHHHHHHHHHTT-SB-TTS-B--EE CS
         PGI   1 dysknkvddeilealvklaeeaklkaarealfaGekinstenravlhvalrnrsnkpilvdGkdvvpevkevldkmkefsekvrsGewkGatgkaitdv 99 
                 d+sk+ +dde l +l++la++++l+++++al+aGek+n te+ra lh+alr ++ ++++vdG+dv  +v++ ldk   +++++rsG w+G++gkai+dv
  EGE23664.1  41 DFSKQAIDDESLLKLIQLADACELSQKIKALLAGEKVNDTEQRAALHTALRLPKGESLIVDGVDVGEQVHDSLDKCEALVHRIRSGIWRGYSGKAIRDV 139
                 9************************************************************************************************** PP

                 EEE--GGGTHHHHHHHHHTGGG-TT.-EEEEE--SSHHHHHHHHTT--GGGEEEEEE-SSS--HHHHHHHHHHHHHHHHHH--.GGGGGGTEEEESS-H CS
         PGI 100 vniGiGGsdlGPvlvtealkkeser.lkvafvsnvdgthiaevlkkldpettlfivasktfttaetllnaesakewllkalke.dsavakhfvalstna 196
                 vniG+GGsdlGP+++t al + +++ ++v+fvsn+dgt+++  lkkl+p+ttlfi++sk f t +tl na++a  wll a  + ++ + +hf+ +st +
  EGE23664.1 140 VNIGVGGSDLGPLMATTALSEWADTdIHVHFVSNMDGTQLESLLKKLNPQTTLFIISSKSFGTVDTLSNAKTALSWLLAAYAHkPTILRRHFIGISTRP 238
                 ********************9998879**************************************************9877662666789********* PP

                 HHHHHHT--GGGEEE--TTS-GGG-TTSGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTS---EEEEEES-GGGTTHH CS
         PGI 197 ekveefGideknmfefwdwvGGryslwsaiGlsvalsiGfenfeelleGaaaidkhfleaplekniPvllalvgvwyvnflgaeteailpydqylerla 295
                 +k+++ Gi ++n + +wdwvGGr+s+wsaiGl++a++iG  nf++ll Ga+++dkhf++a + kn+Pvll+l+gvw+ +flg++++++lpyd +l +++
  EGE23664.1 239 DKMSDWGIHPDNQLLLWDWVGGRFSMWSAIGLAIAVRIGMANFRALLAGAHEMDKHFAQADFYKNLPVLLGLIGVWNATFLGINAHTVLPYDGRLSHFP 337
                 *************************************************************************************************** PP

                 HHHHHHHHHHH---BBTTS-B-SS--S-EEE---TTTGGGTSHHHHHHSSS---EEEEEEEE-S-......GGGGHHHHHHHHHHHHHHHHHHH-B-HH CS
         PGI 296 aylqqldmesnGksvtkdgvlvdvetgeiifGeagtngqhafyqlihqGtkliPcdfiaavksqn......ieiadhhkillsnffaqtealmvGksee 388
                  yl ql+mesnGksv++ g+ v+++t +i++G+ g n+qhafyql+hqGt+ + cdfi+++++ n       + + +hk  l+n +aq++ l++G    
  EGE23664.1 338 NYLTQLEMESNGKSVKRTGESVNYRTCPILWGDIGSNAQHAFYQLLHQGTQRVSCDFITPIHRYNdtqivnNSLVYQHKLSLANCLAQSQVLAFGNA-- 434
                 *************************************************************99887666544556789999**************99.. PP

                 HHHHHHHHTHHHHHGGGG-B-----EEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHTB-TT--GGGHHHHHHHHHHHHHHSSS----SS-HHHHHHH CS
         PGI 389 evkkelakakveklvphktfeGnrPsnsillekltpaelGalialyehkilvqGviwginsfdqwGvelGkelakkilkeleasekvsdfdsstngli 486
                  + + + +++ ++l  +k ++Gn+Ps+++ll +l+p++lGalialyehk++v  v+w+in fdqwGve+Gk++a+++ +el ++++   fd stn+l+
  EGE23664.1 435 ALPHGV-ANAADDLAKFKKYRGNQPSTTLLLGDLNPKTLGALIALYEHKVYVMSVLWQINPFDQWGVEVGKVMANRVYDELISKTNTDCFDHSTNTLL 531
                 455544.45589***********************************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4094.60
//
Query:       EGE23665.1  [L=288]
Description: UTP-glucose-1-phosphate uridylyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-28   98.1   0.0    7.4e-28   97.8   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    2.6e-07   31.1   0.0    4.2e-07   30.5   0.0    1.3  1  NTP_transf_3     MobA-like NTP transferase domain
    0.00037   20.3   0.3      0.002   17.9   0.0    2.2  3  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.28   11.1   0.0    1.3  1  SfsA             Sugar fermentation stimulation protein RE do


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   1.6e-31   7.4e-28       2     244 ..       7     279 ..       6     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1.6e-31
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT.....................SE CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg.....................ve 74 
                      a+I   G GtR+ PL+++++k l+p ++k + i +++ +++++gi++ iv +++ +++ +e+++  + +++                     v+
       EGE23665.1   7 AIIPTAGFGTRMLPLSKAVPKELLPLGDK-PAIHYVVMEAVRAGIKT-IVLVNHAQKQAIENYFDINTELDsqlrqkgkdgladglnflpkdVR 98 
                      688899***********************.999999999999*****.77888888888999999888888889999999************** PP

                      EEEEEESS--BGGHHHHHTHHHHTTSSE..EEEEETTEEEEST........THHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC...... CS
  NTP_transferase  75 vlialepegkgtAdAvalaaelledeksdelvlvLggDhlikd........ayeeavkkaiekaakgtvtfgivpveeateyGviead...... 154
                      +  + +  + g+ +Av++++ +++d+     ++vL  D++ +         ++  ++++++++++  ++++ +v +++  +yG+++ +      
       EGE23665.1  99 IVSVRQGYPLGLGHAVLQGRAVVGDNP----FVVLLPDVVLDPfttdfradNLAYMMTRFAQTGR-SQILVEPVADSQVHKYGIARLKdrqsvq 187
                      ************************999....5777777776655665888889999999999999.79*******************9777776 PP

                      ..TTS....BEEEEECS-SSHSH.CSEECCSEEEEETTHHHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHH CS
  NTP_transferase 155 ..eeg....rverfvEKPkeaka.selassGiYvfnsevllflakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldsllea 241
                        +      +v  fvEKP+ + a s+la+ G Yvf +e++++lak  +++  ge ++td++ ++++++  ++    k+a+   D G++ s+++a
       EGE23665.1 188 ksD-AnhpfDVLGFVEKPSLDLApSNLAVVGRYVFSPEIFEYLAK-TKPSVGGEIQLTDAIDALISQQGMDVV-TIKGAS--FDAGDMTSYIQA 276
                      651.15678***********99989******************88.*********************999986.555655..9*********99 PP

                      HHH CS
  NTP_transferase 242 nek 244
                       + 
       EGE23665.1 277 FAY 279
                      865 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   9.4e-11   4.2e-07       2     117 ..       8     160 ..       7     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 9.4e-11
                   EEEEESS-TTT....TT.THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..CHHHH........................HHTTCTS-EEE-TT CS
  NTP_transf_3   2 viLAGGrSsRm....gg.dKallplggkpllervldalraagvdevvvvggd..eevla........................alarlgvrvveded 67 
                   +i  +G ++Rm    +  +K llplg+kp +++v+  + +ag++ +v+v  +  +++++                         + +++vr+v+ ++
    EGE23665.1   8 IIPTAGFGTRMlplsKAvPKELLPLGDKPAIHYVVMEAVRAGIKTIVLVNHAqkQAIENyfdinteldsqlrqkgkdgladglNFLPKDVRIVSVRQ 104
                   66679******6665226*************************9999996553245555888888888888888888877777667889**999987 PP

                   SS.-SHHHHHHHHHHHH.SSSCEEEEETT-TT......--HHHHHHHHHCHHHHTSS CS
  NTP_transf_3  68 pg.kgplaslaaalraaadadavlvlacDmPl......ltpelverllaaaaasgad 117
                    +  g +++++ + + + ++ +++vl+ D++l      ++++ +++++ ++a++g +
    EGE23665.1 105 GYpLGLGHAVLQGRAVV-GDNPFVVLLPDVVLdpfttdFRADNLAYMMTRFAQTGRS 160
                   7549*********9998.9999*******9998878888888888888888877743 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.5e-07     0.002       2      58 ..       6      63 ..       5     106 .. 0.79
   2 ?   -0.6   0.0      0.21   9.4e+02     106     154 ..     143     188 ..     111     198 .. 0.68
   3 ?   -2.3   0.0      0.69   3.1e+03      25      51 ..     236     262 ..     229     272 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.5e-07
                EEEEECTTSSCTT...-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHH CS
        IspD  2 vvvipAAGsGkRm...kaglpKqflelkgqtllehtvdallaskavdkivvvvseddtee 58
                +++ip AG+G+Rm    + +pK +l l +++ ++  v  +     +++iv+v +++++ +
  EGE23665.1  6 HAIIPTAGFGTRMlplSKAVPKELLPLGDKPAIHYVVMEAVR-AGIKTIVLVNHAQKQ-A 63
                79**********9555689**************999877666.689****99988763.3 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.21
                 -HHHHHHHHHHHHTTCSEEEEEEE-SSEEEEEETTTBEEEEETGTTEEE CS
        IspD 106 kaadiaellaaaeqstqgailalpvkDtikrveadglvaetedRegLwa 154
                 +a+++a +++   q+  + il+ pv D+  +v+ +  +a  +dR+++ +
  EGE23665.1 143 RADNLAYMMTRFAQTGRSQILVEPVADS--QVH-KYGIARLKDRQSVQK 188
                 4567777888888888899999999997..455.556888888887766 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.69
                 ETTEEHHHHHHHHHHCTTTEEEEEEEE CS
        IspD  25 lkgqtllehtvdallaskavdkivvvv 51 
                 + g+  l+ ++dal +++ +d + +  
  EGE23665.1 236 VGGEIQLTDAIDALISQQGMDVVTIKG 262
                 566666777888888888777777655 PP

>> SfsA  Sugar fermentation stimulation protein RE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.2e-05      0.28      80     134 ..      43      99 ..      40     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.2e-05
                 HHHHHTT-EEEEEEE.E-SSS--.EEEE-TTT-HHHHHHHHHHHHHT-EEEEEEEEE CS
        SfsA  80 aelvkegyravvlfv.vqredar.efkpnkeidpefaealreaaeaGVevlaydckv 134
                 +e+v++g +++vl+  +q + ++ +f +n e d ++ ++ ++  + G+++l+ d+++
  EGE23665.1  43 MEAVRAGIKTIVLVNhAQKQAIEnYFDINTELDSQLRQKGKDGLADGLNFLPKDVRI 99 
                 899*******998761666666689**************************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2036.46
//
Query:       EGE23666.1  [L=859]
Description: glycerol-3-phosphate acyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-22   79.3   0.0    3.7e-22   78.4   0.0    1.5  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   2.1e-26   3.7e-22      11     134 ..     318     450 ..     308     451 .. 0.85

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 2.1e-26
  Acyltransferase  11 pe...kgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidR..ksnaraagslenise.lleegklvviF 98 
                      ++   + ++++v++H+s++D+lll+++ yk+++ r ++++a+++ l+ip+lg+l+r++g++f++R  k+n  + ++ +++++ l++++  + +F
       EGE23666.1 318 RTlapDYQVVYVPCHRSHVDYLLLSYVIYKRGL-RIPHVAAGEN-LNIPILGELLRSGGAFFMRRsfKGNTLYSTVFKEYVHsLMQRQAPIEYF 409
                      44444889************************7.8889888888.89********************77777777777776626666666**** PP

  Acyltransferase  99 PEGtrsregellpfkkGlvrlaakak.....kgvpivPvai 134
                       EG+rsr+g+llp+k G+  + ++ +     k v+ +P +i
       EGE23666.1 410 IEGGRSRTGRLLPPKLGMLAMTVNSHlrkpaKPVVFIPAYI 450
                      **************************999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5841.00
//
Query:       EGE23667.1  [L=320]
Description: acyl-CoA thioesterase II [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-48  164.0   0.1    8.7e-48  163.7   0.1    1.0  1  4HBT_3         Thioesterase-like superfamily
    2.7e-32  111.4   0.0    1.5e-26   92.8   0.1    3.1  2  Acyl_CoA_thio  Acyl-CoA thioesterase


Domain annotation for each model (and alignments):
>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.1   9.7e-52   8.7e-48       7     248 .]      45     308 ..      41     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 9.7e-52
                 CTTC.-HHHHHHHHHHHHHHT...-S.SSEEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEE.............TTEEEEEEEEEEE---T. CS
      4HBT_3   7 pggagyGGyvlAlalraaqrtv..pdprlhslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsq.............ggrpiftatasfgraest 89 
                 ++++ +GG+vlA+al a   t+  ++p  hslh+yFlr gd   p++y+v+r+rdGrs s r+v + q             ++++if+++asf+ +e  
  EGE23667.1  45 GPRV-FGGQVLAQALLAGANTLtiDKP-CHSLHGYFLRGGDIRlPIVYQVRRLRDGRSLSAREVIAVQyvpttdkngnhttNEQVIFSMIASFSPMEG- 140
                 4556.**************99877888.9**********************************************99999989**************6. PP

                 ...---EE-------.GGGE---........--SSGGGSGG..TEEEE-HHT---S........S-EEEEEEEET...TTS-SSHHHHHHHHTT-.... CS
      4HBT_3  90 gwelepaaapppvpppdeaalaad.......eaplplfrrvpgflepfeprpaeggkpd.spagpkrvrqWvrlr...eggepahlaaLaylsDs.f.. 174
                 g  l+ ++++p+ ppp+  + +++       + p+pl +r+  + +++e+rp++++ p+  +  +++++ Wvr +   e + + h+a La++sD+ +  
  EGE23667.1 141 G--LDYQETMPDYPPPESLKTEQElkadylhKIPEPLKARF-MRQRHVEIRPVTPRDPVtPKPERPHQANWVRIAdigEQPVAIHQALLAFVSDYyLvs 236
                 5..44555799999988885555556767554444444433.24559******8888884444578999*****97433334888999*******8898 PP

                 -GGGGTSS-......SB--EEEEEEEE-S--.S-...EEEEEE-SEEETTEEEEEEEEE-TTS-EEEEEEEEEET CS
      4HBT_3 175 pvprvhglrldaeasgwmpsldltiyfhrep.aedeWllleaetpwagdgrglvearlwdedGrlvAtstQeglv 248
                 + ++ hgl+l++++   m+s+d++i+fhr p + +e ll+++ + + ++  gl ++++w +dG+l+A++ Qegl+
  EGE23667.1 237 TGLMSHGLSLMTQG-LQMASIDHSIHFHR-PfDMTEYLLYDMWSDTTSHAKGLNHGQFW-QDGKLIASTQQEGLM 308
                 88888899988788.99************.52449************************.9************97 PP

>> Acyl_CoA_thio  Acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   9.3e-06     0.083      81     118 ..      75     103 ..      39     127 .. 0.76
   2 !   92.8   0.1   1.7e-30   1.5e-26       3     132 .]     176     307 ..     174     307 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.3e-06
                    EEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEE CS
  Acyl_CoA_thio  81 HsvyFlrpgdlnewilydvespsasggrgLrqGriFst 118
                    H  yFlr+gd++ +i+y+v +        Lr+Gr+ s 
     EGE23667.1  75 HG-YFLRGGDIRLPIVYQVRR--------LRDGRSLSA 103
                    66.9*****************........888887654 PP

  == domain 2  score: 92.8 bits;  conditional E-value: 1.7e-30
                    CTCCEC-.SEEEECSSSSBTTCHHHHH.EECCCCCCCCTS-TTHCCCCCHHHHHTTSSSGGGGGGGGT..TTSTTEEE.EEEEEEEE-S--BTTS- CS
  Acyl_CoA_thio   3 kelfeleypvevrpkelkrefgGqvva.ekqsllrakktvPddallhsvllaYlSDltllltalttHe..lledslqv.sldHsvyFlrpgdlnew 94 
                    k++f+ ++ ve+rp + + +   +    ++  ++r+ ++  +   +h++lla++SD +l+ t l+ H+  l++++lq+ s+dHs++F+rp+d+ e 
     EGE23667.1 176 KARFMRQRHVEIRPVTPRDPVTPKPERpHQANWVRIADIGEQPVAIHQALLAFVSDYYLVSTGLMSHGlsLMTQGLQMaSIDHSIHFHRPFDMTEY 271
                    56788888899999888888888877789****************************************99************************* PP

                    EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEEEEEE CS
  Acyl_CoA_thio  95 ilydvespsasggrgLrqGriFstqdgkliasvqqeGl 132
                    +lyd+ s ++s+++gL +G+++  qdgklias+qqeGl
     EGE23667.1 272 LLYDMWSDTTSHAKGLNHGQFW--QDGKLIASTQQEGL 307
                    *********************9..************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2502.44
//
Query:       EGE23668.1  [L=55]
Description: hypothetical protein EA1_08532 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 465.97
//
Query:       EGE23669.1  [L=386]
Description: hypothetical protein EA1_08537 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-121  405.8   0.2   1.5e-121  405.5   0.2    1.0  1  DUF1615   Protein of unknown function (DUF1615)
  ------ inclusion threshold ------
       0.46   10.6   2.2          2    8.5   0.1    2.9  3  Annexin   Annexin


Domain annotation for each model (and alignments):
>> DUF1615  Protein of unknown function (DUF1615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.5   0.2  1.7e-125  1.5e-121       2     319 ..      45     378 ..      44     379 .. 0.96

  Alignments for each domain:
  == domain 1  score: 405.5 bits;  conditional E-value: 1.7e-125
     DUF1615   2 vkdregWaediaaalealkiaktkenvcavlAvieqeSsfqadpavpglgkiarkeieeraekl...evpkllveaalkkkspdGktykerldavrtek 97 
                 v++ + Wa+di +++++l+++kt++n+c+++Avi+qeS+f+adp+vp+lg+ a k+i+++ e++   ++++++ ++  ++++p+ +++ ++++av+tek
  EGE23669.1  45 VNNAKLWATDIGDIFDELSLPKTAQNICTAIAVIDQESNFHADPSVPNLGNAALKAIDDKLEDKlgkNMAGVFRNMLETRPTPK-NNFIKQIKAVKTEK 142
                 78999*******************************************************99987879999999*9999****9.************** PP

     DUF1615  98 eldelyedliaev..............llgkklleelnpvttgGpmqvsvafAeeharkkypyeakgslReevftrrGglyfGiarLleYpaaYdkply 182
                 +ldely+++++++              l g+ + e++npvtt G+mqv++++A++h+r  ++++ + +lR +++tr+Ggly+Gi+rL+ Y+a+Ydkply
  EGE23669.1 143 QLDELYREIFDYFtrtykiapltnitkLSGQGIDERINPVTTLGSMQVHIDYARAHRR--ASMS-DRDLRADLYTRYGGLYYGIHRLMVYQANYDKPLY 238
                 **************************99******************************..2222.456******************************* PP

     DUF1615 183 rfADfNaGvYaSRNAafqaavsrlsgeklalDGDLllyekdes.seasstekalralakrl..klsekqirrdlkkeksadfeetelykkvfaladkka 278
                 rfAD+N+G+Y+SRNAafq+++++lsge+la+DGDLlly++++  s+ sste+a++al +++   ++++qir+d+kkek++dfe+t +y++v++++++k+
  EGE23669.1 239 RFADYNSGMYSSRNAAFQQRIATLSGESLAIDGDLLLYKDGSPiSKISSTETAAIALLATAskPINAQQIRSDFKKEKTRDFEKTITYRAVNDMFASKF 337
                 ***************************************998569***********99887779*********************************** PP

     DUF1615 279 gkelpravlPqiklkspKisrklttaWfAkrvdeRyqrCla 319
                 g+e+++a++P++ +++pK+sr+++t+WfA+rv+eRyq+C++
  EGE23669.1 338 GREPTYAIMPKVVISGPKLSRDFDTNWFATRVNERYQTCIT 378
                 ***************************************96 PP

>> Annexin  Annexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.11   9.9e+02      45      63 ..     103     121 ..      99     123 .. 0.87
   2 ?   -2.2   0.1      0.52   4.6e+03      39      48 ..     229     238 ..     227     239 .. 0.88
   3 ?    8.5   0.1   0.00023         2      11      53 ..     283     326 ..     280     334 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.11
                 S-HHHHHHHHS-HHHHHHH CS
     Annexin  45 kdLekdIksetsGdfekll 63 
                  +Le+ + + + G f+++l
  EGE23669.1 103 DKLEDKLGKNMAGVFRNML 121
                 579*************998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.52
                 HHHHHSS-HH CS
     Annexin  39 YkkkygkdLe 48 
                 Y+++y k L+
  EGE23669.1 229 YQANYDKPLY 238
                 *******997 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00023
                 SSSSSCHHHHHHHHHHSTHH.HHHHHHHHHHHHHSS-HHHHHHH CS
     Annexin  11 kglGtdektlieIlatRsna.qlqaifeeYkkkygkdLekdIks 53 
                 +++ + e++ i  lat s++   q+i+  +kk+  +d ek I+ 
  EGE23669.1 283 SKISSTETAAIALLATASKPiNAQQIRSDFKKEKTRDFEKTITY 326
                 56778899999999999975489*******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3031.91
//
Query:       EGE23670.1  [L=369]
Description: putative ABC transporter permease protein YjgP/YjgQ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-54  185.2   8.7    1.7e-54  185.1   8.7    1.0  1  LptF_LptG  Lipopolysaccharide export system permease LptF/Lpt
  ------ inclusion threshold ------
      0.025   14.9   0.3      0.025   14.9   0.3    2.7  2  CPBP       CPBP intramembrane metalloprotease


Domain annotation for each model (and alignments):
>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.1   8.7   1.8e-58   1.7e-54       1     354 []       8     366 ..       8     366 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.1 bits;  conditional E-value: 1.8e-58
   LptF_LptG   1 rYilreflkpfllvllvllfllllqdllryldllvgkglpvgdllelilynlpyilelalPlavLlavlltfgrLaedsEltalrsaGislgrllrpil 99 
                 +Y++r+ l  ++++++ l ++ +++++l +ld++ +  +++ d+l +ily+ py+l++++P   Ll++++ +g La++sEl+++r+aG+s++r++  ++
  EGE23670.1   8 KYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNI-SETYTLTDALLFILYRSPYFLVQFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAM 105
                 6*********************************.9999************************************************************ PP

   LptF_LptG 100 ilalllsvlsfllnnyvvPwankkaesllseirqkspsllikpgvfikdgdg..yiiyvgsmddeggelqdvtiydltegkgltsiitAksgvlvksad 196
                 + a++++v+s+++n++v+P an+ a  +++++  ++  + i+ +  ++ + +   ++y+++ d+egg l +v  y+l ++++l++ ++Aksgv+  ++d
  EGE23670.1 106 LPAVIFVVISLGVNQFVLPTANQHAAAIRADTIYDKLIT-IDGYWSVNHDGDnqDVVYISYADNEGG-LGEVKRYQL-KDGQLITALKAKSGVYLPQSD 201
                 ***********************************9999.44444444433359************9.*********.99***************9999 PP

   LptF_LptG 197 ........elqlrLfngeiyevgddekkysretferyridinldpadlsteeespdelslselkekikalrseglevrryraelhkrlalplaclvfal 287
                           +++L+    + +g +  ++++   e + ++++  p d+  ++++p+ lsls l+++ + ++ +g +  r++++++++l  p+a+l ++l
  EGE23670.1 202 dvmnaqkaRYTWQLSGIDEIGIGTS--QVQQAHSEGKILTLPIAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSLRHELAFWQKLLSPFAVLSLVL 298
                 9999998888999999999888877..899999999999999********************************************************* PP

   LptF_LptG 288 iaaplglvk.rrggrglrlliaillfvlyyvllslgkalaengvlppilaawlpnilflllglflllr 354
                 +a ++++ + r +g+glr+++a+l ++l+  l  l    a ++ l+p+l+a++p++l +++g++ll r
  EGE23670.1 299 VASSFVFGSlRSQGLGLRVVLALLTGLLFSYLTDLTGFVALATGLSPLLMALVPIVLSAMAGMYLLNR 366
                 *********999****************9999999999999999*********************976 PP

>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   3.4      0.17   1.5e+03      38      72 ..      43      79 ..       9     124 .. 0.72
   2 ?   14.9   0.3   2.8e-06     0.025      28      81 ..     285     338 ..     225     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.17
                HHHHHHHHHHHHHCSGGG.HHH.HHHHHHHHHHHHHH CS
        CPBP 38 tlailissilFglaHlpn.gps.vllaalaGlvlgyl 72
                 +++l  ++lF l+  p+  ++ + + +l+G v+g+ 
  EGE23670.1 43 ETYTLTDALLFILYRSPYfLVQfIPTGTLLGAVIGLG 79
                6778888999999998885444444456667666554 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.8e-06
                 HHHHHHH...S-HHHHHHHHHHHHHCSGGGHHH.HHHHHHHHHHHHHHHHHTT-HHH CS
        CPBP  28 lqllqer..gsstlailissilFglaHlpngps.vllaalaGlvlgylylktgslla 81 
                 ++ll+ +      l++++ss++Fg +        v+la+l Gl+++yl+  tg ++a
  EGE23670.1 285 QKLLSPFavL--SLVLVASSFVFGSLRSQGLGLrVVLALLTGLLFSYLTDLTG-FVA 338
                 4444444333..5999***********9995555******************9.544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2636.56
//
Query:       EGE23671.1  [L=437]
Description: putative ABC transporter permease protiein YjgP/YjgQ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-97  326.4   4.3    1.7e-97  326.4   4.3    1.3  2  LptF_LptG  Lipopolysaccharide export system permease LptF/Lpt
  ------ inclusion threshold ------
      0.049   13.5   0.0        1.4    8.8   0.0    2.2  2  NUC153     NUC153 domain
        1.1    9.5   0.0        1.1    9.5   0.0    4.3  4  DUF4229    Protein of unknown function (DUF4229)


Domain annotation for each model (and alignments):
>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   0.8       1.2   6.9e+03     320     350 ..      18      49 ..      14      52 .. 0.72
   2 !  326.4   4.3  2.9e-101   1.7e-97       1     351 [.      60     417 ..      60     420 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 1.2
   LptF_LptG 320 slgkalaengvlpp.ilaawlpnilflllglf 350
                 ++g+++  ++ l+p ++ +++ n+l  + +l 
  EGE23671.1  18 NIGNKINLANHLKPlWFFVIIRNLLATFWSLC 49 
                 78888888888866477788888877777665 PP

  == domain 2  score: 326.4 bits;  conditional E-value: 2.9e-101
   LptF_LptG   1 rYilreflkpfllvllvllfllllqdllryldllvgkglpvgdllelilynlpyilelalPlavLlavlltfgrLaedsEltalrsaGislgrllrpil 99 
                 rY++ +++++++lvl++l+++ll+++l+ry++ ++++gl vg+l++li+yn py+lel+lPl+++++++l+fgrL++d+E+t+++++Gis+gr++r+++
  EGE23671.1  60 RYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLM 158
                 9************************************************************************************************** PP

   LptF_LptG 100 ilalllsvlsfllnnyvvPwankkaesllseirqkspsllikpgvfikdgdgyiiyvgsmddeggelqdvtiydlt..........egkgltsiitAks 188
                 +l+++l++++ +++ +++Pw+ ++a ++++e++  + ++li+p+ fi++gd y++yvg+m ++ + l+dv+i++ +          + ++++sii Aks
  EGE23671.1 159 PLVVVLMCIEGWVSMVAKPWGMERATNIWQEQSVAQVFDLIRPQEFISSGD-YHLYVGEMGANREFLKDVIIIQMHtaepsdiqsrQSHQRDSIIFAKS 256
                 ***************************************************.**********************999*******9988*********** PP

   LptF_LptG 189 gvlvksad.elqlrLfngeiyevgddekkysretferyridin.ldpadlsteeespdelslselkekikalrseglevrryraelhkrlalplaclvf 285
                 ++ v+  + + ql+L++g++yev++ + +ys+++feryr++++ ++p+ +s  +   + +s++el   i+   + +++ ++ +ael +rl++p+++l++
  EGE23671.1 257 ATHVETGNgQIQLDLQQGRRYEVDPTSRQYSQIGFERYRMTLSvKPPEGTSHIRI--EGVSTTELLSIIQGHSKRDNP-QEAYAELGYRLSMPWLILLA 352
                 ***988889**********************************777777777766..699*****8888876555555.6677**************** PP

   LptF_LptG 286 aliaaplglvkrrggrglrlliaillfvl.yyvllslgkalaengvlppilaawlpnilflllglfl 351
                 +l+a pl++v +r+gr+ +l++ail++v+ ++v++sl+ ++a++ ++ p + ++ +++ +++++++l
  EGE23671.1 353 ILLATPLSYVRPRQGRWYKLVPAILIYVAgVLVVISLKDTIAKGKLS-P-VIYLAALLMMMVVAMYL 417
                 *******************************************9666.4.57777777778887776 PP

>> NUC153  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.028   1.7e+02       4      12 ..     131     139 ..     131     139 .. 0.96
   2 ?    8.8   0.0   0.00023       1.4      13      23 ..     277     287 ..     272     289 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.028
      NUC153   4 FkalFedhd 12 
                 F++l++dh+
  EGE23671.1 131 FGRLYTDHE 139
                 9*******8 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00023
      NUC153  13 FaIDptspeFk 23 
                 +++Dpts+++ 
  EGE23671.1 277 YEVDPTSRQYS 287
                 9*********6 PP

>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.7      0.26   1.5e+03       9      25 ..      71      87 ..      70      93 .. 0.84
   2 ?   -2.6   0.4         1   6.1e+03       6      16 ..     154     164 ..     152     176 .. 0.49
   3 ?    9.5   0.0   0.00018       1.1      30      48 ..     344     362 ..     335     368 .. 0.83
   4 ?    1.1   2.4      0.07   4.2e+02      11      47 ..     380     419 ..     372     432 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.26
     DUF4229  9 aLfvvltavillvarli 25
                aL++++++vill +rli
  EGE23671.1 71 ALVLGFLVVILLGGRLI 87
                68999999999998887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1
     DUF4229   6 aRlaLfvvlta 16 
                 aRl++ +v+ +
  EGE23671.1 154 ARLLMPLVVVL 164
                 55554333222 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00018
     DUF4229  30 pllvaallAlvvalplSmv 48 
                  + +++llA+++a plS+v
  EGE23671.1 344 SMPWLILLAILLATPLSYV 362
                 56699*************8 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.07
     DUF4229  11 fvvltavillvarliglp......vpllvaallAlvvalplSm 47 
                 ++++++vi l   +   +      v  l a+l+ +vva+ l +
  EGE23671.1 380 VAGVLVVISLKDTI---AkgklspVIYLAALLMMMVVAMYLNY 419
                 33344444444433...14458666667778888899988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3269.04
//
Query:       EGE23672.1  [L=503]
Description: leucyl aminopeptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.1e-118  393.9   2.3     7e-118  393.4   2.3    1.2  1  Peptidase_M17    Cytosol aminopeptidase family, catalytic dom
    9.5e-08   32.0   0.4    4.8e-07   29.7   0.0    2.3  2  Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal do
  ------ inclusion threshold ------
      0.027   14.8   0.3        1.1    9.7   0.0    3.0  3  PDZ_2            PDZ domain


Domain annotation for each model (and alignments):
>> Peptidase_M17  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.4   2.3  1.2e-121    7e-118       2     310 ..     184     495 ..     183     496 .. 0.95

  Alignments for each domain:
  == domain 1  score: 393.4 bits;  conditional E-value: 1.2e-121
                    HHHHHHHS-TTTS-HHHHHHHHHHHHTCCT.EEEEEEEECHHHHHTT-HHHHHHHTTSSSS--EEEEEEEE-SS.......TTSEEEEEEEEEEEE CS
  Peptidase_M17   2 lardlvntpaneltpeklaeeaeelakeag.kvevevldeeeleekgmgallaVgkgSeeepprlveleykgak.......ekekklalVGKGitf 89 
                    +ard++n+ +n+l+p++la++a++lak+++ +v+v+vl+e++++++gmg++laV++gS+  + +l ++ey g++       + +k++alVGKG+tf
     EGE23672.1 184 TARDVANEAPNVLNPSELAKKAKQLAKDYAdTVSVTVLNEKDMKKLGMGCFLAVSQGSD-AEGKLAVIEYYGKSkksdkkaKLDKPFALVGKGLTF 278
                    69*********************975555449**************************5.5**********99988777666678889******** PP

                    EE-TTSS--HHHHTTGGGGGHHHHHHHHHHHHHHHHT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-EEEES-TTGCHHHHHHHHHHHHHGCT CS
  Peptidase_M17  90 DtGGlslKpsasmeemkaDmgGAAavlgalkavaelklpvnvvavlplaeNmisgkavkpgdvitamnGktvevlnTDaEGRLvLADalayaeeke 185
                    D+GG+slKp+a+meemk DmgGAA++lg+++avae++l++++vavl++aeNm+s+++ +pgdv+tamnG+tve+lnTDaEGRLvL+Dal+y++e++
     EGE23672.1 279 DSGGISLKPAAGMEEMKFDMGGAASILGTVRAVAEAGLEIDLVAVLACAENMPSSRSARPGDVVTAMNGTTVEILNTDAEGRLVLCDALCYVQEHY 374
                    *********************************************************************************************999 PP

                    --SEEEEEE---THHHHHHTTTSEEEEES-HHHHHHHHHHHHHHS-EEEE----HHHGGGG--SSSSEESS-SSSSTHHHHHHHHHHTTSSE.CGE CS
  Peptidase_M17 186 kpdlivdvATLTgavvvalGkkaaglfsnddelaeelekageeagervwrlpleeeykkqlkskvaDlknvgkkrragaitAalFLkefvke.tpW 280
                    ++++i+d+ATLTga+v+alG+  +g++snd++   +l++a+e +g+ vw++pl++ y++q++sk+aD++n+g+ r+ag++tAa+FL++f+ke ++W
     EGE23672.1 375 DARIIIDTATLTGACVIALGSVRSGMYSNDEDALFALQAASEYTGDLVWHMPLDDAYDEQINSKIADVQNIGG-REAGSVTAACFLQRFIKEgQAW 469
                    ******************************************************99*****************.999*************88899* PP

                    EEEE-TTTTES.BTTB.S..EE--TTHHHH CS
  Peptidase_M17 281 aHlDiagtalkekealkkekgatGvgvrtL 310
                    +HlDiag+a+k+ +    ++ a+G++v++L
     EGE23672.1 470 VHLDIAGPAWKSGS----TNTASGRPVALL 495
                    *********96532....3589*****998 PP

>> Peptidase_M17_N  Cytosol aminopeptidase family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     8e-11   4.8e-07       3     126 .]      29     147 ..      27     147 .. 0.83
   2 ?   -1.1   0.1      0.28   1.7e+03       6      49 ..     197     240 ..     194     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 8e-11
  Peptidase_M17_N   3 gvf...eggklspaaekldealagllsellkegdftGkagevlvlralsgekakrvllVGLGkeeeltaealrkaagaaaralkgakvttiava 93 
                       vf   eg+ l +++   d+++  + ++l++++ f+G  g++++ +al+ + ++ + +VG+Gk ++  a+++ k+a a+   +k+++ + i+  
       EGE23672.1  29 VVFvndEGQILGNLG---DAQYISRATALIQQSHFKGTLGKSVTDYALDDQASPAISIVGVGKLDK-LADNIAKVAVATYDVIKNSQSAAILWG 118
                      444334555555555...89999999****************************************.7899999999********555555544 PP

  Peptidase_M17_N  94 lplegknsdekaeaaaegallglYrfdrykskk 126
                       +      + +  ++++++  ++Yrf++ k+k+
       EGE23672.1 119 DT----ICQIHFTQFVTALIGASYRFEHHKTKP 147
                      44....3348999****************9985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.28
  Peptidase_M17_N   6 eggklspaaekldealag.llsellkegdftGkagevlvlralsg 49 
                      ++++l++ a++l +++a     ++l+e+d++ k g   +l   +g
       EGE23672.1 197 NPSELAKKAKQLAKDYADtVSVTVLNEKDMK-KLGMGCFLAVSQG 240
                      5677888889999888885666788888888.7776666665555 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.56   3.3e+03      24      41 ..     107     124 ..      91     133 .. 0.70
   2 ?    1.1   0.0     0.083   4.9e+02      58      78 ..     209     229 ..     197     231 .. 0.81
   3 ?    9.7   0.0   0.00018       1.1      16      47 ..     321     351 ..     311     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.56
                 TSGGGGT.--TT-EEEEE CS
       PDZ_2  24 ggPaakaglkagDvilkv 41 
                  + ++ a +  gD+i+++
  EGE23672.1 107 IKNSQSAAILWGDTICQI 124
                 344567778999999987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.083
                 TS-TT-EEEEEEEETTEEEEE CS
       PDZ_2  58 kkkpGdtVkltvlRdgkkktv 78 
                 +k+  dtV++tvl ++++k++
  EGE23672.1 209 AKDYADTVSVTVLNEKDMKKL 229
                 566779*******99999876 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00018
                 EEEEEE-TTSGGGGT.--TT-EEEEETTB--S CS
       PDZ_2  16 vlvvsVkeggPaakaglkagDvilkvdgkkvk 47 
                 v v    e++P++++  ++gDv+++ +g++v+
  EGE23672.1 321 VAVLACAENMPSSRS-ARPGDVVTAMNGTTVE 351
                 556777899999888.9*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3601.24
//
Query:       EGE23673.1  [L=398]
Description: aromatic amino acid aminotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-76  256.2   0.0    5.7e-76  256.0   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.0   0.0   3.2e-80   5.7e-76       2     362 ..      28     392 ..      27     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 256.0 bits;  conditional E-value: 3.2e-80
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT- CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllklnpgd 94 
                    +++nLg++ y +++g+ p+l++v+ ae + +   +    y+p+dglp +++a  ++l+  +++++ + r a++ +++G+gal + ++f+ + +p  
     EGE23673.1  28 IKVNLGVGVYYTEDGQlPVLECVKTAESK-ITNPPRPRGYLPMDGLPGYRKACQDLLFgkNHPAVLEGRVATIATLGGSGALKVGADFIHEWFPNA 122
                    689**************************.9999999*********************99999********************************* PP

                    EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETT CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaY 190
                    + +v+dpt+a++  i++ +g+ev +yp+y++++ ++ +++l+e  k++ e+++   v+l+ ++hNPtG+++t+e++  ll+++k ++l++f D aY
     EGE23673.1 123 KCYVSDPTWANHVGIFEGAGFEVAKYPYYDPKTIGVKFDELCEFFKTLNENDV---VLLHPCCHNPTGVDLTREQWNVLLQIVKDKKLIPFMDIAY 215
                    *****************************************************...**************************************** PP

                    TTCBSSSS.HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH.......HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH...H CS
  Aminotran_1_2 191 agfvfgsl.davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs...e 273
                    +gf  +   da+a+r  v  +  +++ +s+sK+++l+GeRvG ++++a        v+ ql+  +r+++s   +++ ++v a+++d+ l +    e
     EGE23673.1 216 QGFGDDMDgDAYAIRRAVGLGLTVFVSNSFSKNLSLYGERVGGLSVVAptkeeadVVLGQLKFTVRRIYSspAAHGNYVVDAVMNDEALFALwigE 311
                    *****9559*************************************999**********************999***************999999* PP

                    HHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHH..HHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 274 leemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskk..LleevgvyvtpgtsftvpgrlRitvAglteeeleelvea 362
                      emr+r+ ++r++l ++L ++    +++++++q gmf++t+l++e      ++  L+ee+ vy++         ++R++vAgl+++++e++++a
     EGE23673.1 312 AYEMRDRIRDMRQKLQEALSNKlperDFSYFTKQRGMFSFTGLTKE------QVirLREEFAVYMVE--------NGRMCVAGLNNSNVEYVASA 392
                    *******************999************************......8888***********........9***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3014.29
//
Query:       EGE23674.1  [L=307]
Description: LysR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-39  133.5   0.1    8.5e-39  133.1   0.1    1.2  1  LysR_substrate  LysR substrate binding domain
    2.5e-21   75.4   0.6    3.6e-20   71.7   0.6    2.7  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.066   13.3   0.0       0.17   12.0   0.0    1.7  1  T2SSM           Type II secretion system (T2SS), protein M
      0.082   13.1   0.1        5.8    7.1   0.1    2.4  2  Phenol_monoox   Phenol hydroxylase conserved region
       0.11   12.5   0.3       0.63   10.0   0.1    2.4  3  MarR            MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.1   2.4e-42   8.5e-39       4     207 ..      91     293 ..      88     295 .. 0.92

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 2.4e-42
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                      +g++r+++++ l+++ +p+++a+f+  +P++++ l+  + +++++ +++ e+Dl+++ ++ ++++l+a++L++ p++lv+++ hp+a+++ +++
      EGE23674.1  91 HQGHVRLAVSQQLSASTMPKFVAKFCDIHPNIQVTLTDCSVDDVVEHIENLEADLGVAPERVHSDDLQAVVLFSSPFYLVLPATHPFAKKDVLRW 185
                     69********************************************************************************************* PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCT..TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalrea..glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                      dL +e+li+l+   ++  +l++ l ++   +  +  +evn l+++l++ + GlG++l   +a+ +++++++lv++p+++p ++r + l+++k+r
      EGE23674.1 186 TDLLNERLITLN--GPFIKSLQNELPAQisSRIFNSEFEVNFLSTALGMTRMGLGVTLCLLYAA-EWVEQNGLVMRPIADPVVERKFLLYTHKNR 277
                     **********88..34444444444444224445999**************************8.***************9999*********** PP

                     CCHHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflrea 207
                      lspa+ af +fl ++
      EGE23674.1 278 SLSPAALAFKEFLEQN 293
                     *************875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.6     1e-23   3.6e-20       1      59 [.       5      63 ..       5      64 .. 0.98
   2 ?    0.2   0.0       0.2   7.2e+02      31      43 ..     135     147 ..     129     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 1e-23
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                lrql++f+ vae+ sft+AAe L l+q+a+s  ik+LE+ lgv+Lf+Rt+r+l L +aG
  EGE23674.1  5 LRQLKAFLLVAEQNSFTKAAETLCLTQSALSGLIKELEQNLGVKLFDRTTRKLHLSDAG 63
                79********************************************************9 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHTS CS
       HTH_1  31 srqikrLEeelgv 43 
                   +i +LE+ lgv
  EGE23674.1 135 VEHIENLEADLGV 147
                 579********98 PP

>> T2SSM  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.6e-05      0.17      49     142 ..      66     155 ..      58     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHCT-..-EEEEEEETT.EEEEEE--B-HHHHHHHHHHHHHHS--EEEEEEEE CS
       T2SSM  49 elqklraqlawveeqaaevralraapasalsgaaleqvvtrsarqagL..alarlqpqgdgsvqvwleevpfeallrWLaeleeqqgvsveeadld 142
                  l+++r+ l ++    ++v +l+     +l ++ ++ +v++++++  +   +a++    + ++qv+l +++++++++ ++ le+  gv  e+++ d
  EGE23674.1  66 LLPQARRVLNEMSVLNEKVNNLK-----SLHQGHVRLAVSQQLSASTMpkFVAKFCDIHP-NIQVTLTDCSVDDVVEHIENLEADLGVAPERVHSD 155
                 58899999999999999999998.....56667788899999999999766778888888.9**************************98887655 PP

>> Phenol_monoox  Phenol hydroxylase conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0016       5.8      21      39 ..     161     179 ..     157     184 .. 0.91
   2 ?    3.3   0.0     0.025        88      32      58 ..     281     307 .]     266     307 .] 0.89

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0016
  Phenol_monoox  21 llFcapvalplppdmpFga 39 
                    +lF++p+ l lp++ pF++
     EGE23674.1 161 VLFSSPFYLVLPATHPFAK 179
                    69***************85 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.025
  Phenol_monoox  32 ppdmpFgalvekvlkpligahPdfari 58 
                    p+++ F++++e+++++ + +h+ +++i
     EGE23674.1 281 PAALAFKEFLEQNAHEFLVSHSKVSGI 307
                    78899****************998876 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00018      0.63      21      44 ..      21      44 ..       4      44 .. 0.87
   2 ?   -3.2   0.0       2.3   8.1e+03      23      48 ..     226     251 ..     223     253 .. 0.67
   3 ?   -2.2   0.0       1.1   4.1e+03      42      49 ..     251     258 ..     246     259 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00018
                HHHHHHHTS-HHHHHHHHHHHHHT CS
        MarR 21 seLakklgvskstvtrvldrLekk 44
                ++ a+ l++++s+++ ++++Le++
  EGE23674.1 21 TKAAETLCLTQSALSGLIKELEQN 44
                556899****************96 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.3
                 HHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  23 LakklgvskstvtrvldrLekkGlie 48 
                 L  +lg++++ +  +l  L+ ++++e
  EGE23674.1 226 LSTALGMTRMGLGVTLCLLYAAEWVE 251
                 66677777776666666677777775 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.1
                 HHTTSEEE CS
        MarR  42 ekkGlieR 49 
                 e++Gl++R
  EGE23674.1 251 EQNGLVMR 258
                 89****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2527.11
//
Query:       EGE23675.1  [L=359]
Description: calcium/proton antiporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-18   66.6  45.2    6.9e-11   42.3  17.1    2.1  2  Na_Ca_ex  Sodium/calcium exchanger protein
  ------ inclusion threshold ------
        1.1    9.7   3.5         21    5.6   0.2    2.5  2  Goodbye   fungal STAND N-terminal Goodbye domain


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3  17.1   7.7e-15   6.9e-11       4     150 ..      33     186 ..      30     187 .. 0.84
   2 !   30.5  20.1   3.5e-11   3.1e-07       2     149 ..     215     356 ..     214     358 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 7.7e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT...HHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCEC CS
    Na_Ca_ex   4 vlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltge...vdlaignvlGsnifnlllviGlialigslkvdsesl 99 
                 +l il+ ++++ +    v ++e++a   +  g+++G+++lAl+ +++E++++i+ ++ g    + l +++v+++++++l++++G+++ ig+lk++++ +
  EGE23675.1  33 LLQILGGVFLIGSVLSAVYHTEVVA---HKVGEPFGTIILALAITIIEVALIISLMVAGGdnaAYLPRDTVFAAIMLILNGILGMSLMIGGLKHREQFF 128
                 5567777777888888899999999...9****************************86666899999***********************55555555 PP

                 CHHHHHHHHHHHHHHHHHHHTCHHHHH........HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 100 kldlgllllvallllllvlllllplfv........pgrltvleglvllllYalylvlsl 150
                   +   + l++l++ +lv++l+lp+f+        +  +  +++++ l+lY+ ++ +++
  EGE23675.1 129 GQKSASTALITLVS-ILVMTLILPNFTtsttqgtySSAQLMFVAVASLVLYGSFIMVQT 186
                 55555556666655.55667789**99********999999**************9997 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 3.5e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 +f++++++l ++++la+ l++s+e+ + ++g + +++G+ ++A+++ +pE ++++ aa+++  + +++ +lGs+++ ++l+i+ + ++    ++   l 
  EGE23675.1 215 SFIFLLICLGIVVMLAKSLSPSIEAAVAYMGAPVALVGV-IIAAVVLMPEGLAALNAARHNRFQTSLNLALGSALASIGLTIPAVTIVCL--IYDIPLV 310
                 6889999999999**************99**********.99******************************************999955..4444556 PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                 l l ++++v+l l+ ++++l  ++  +gr ++l g+vll+   +y++  
  EGE23675.1 311 LGLDGKSMVLLGLSTFIVMLS-LN--QGRTNILYGIVLLVNLSAYVFTI 356
                 666667777776655444444.44..5***********99877777765 PP

>> Goodbye  fungal STAND N-terminal Goodbye domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2    0.0023        21      57      94 ..      74     111 ..      68     123 .. 0.83
   2 ?    4.4   0.4    0.0056        50      46      91 ..     131     176 ..     116     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0023
     Goodbye  57 kilspiqllggiaaqgasmaFgPaslcfnAvsyLikaa 94 
                 +i+++   ++ ++a g ++a+ P +++f+A++++++  
  EGE23675.1  74 TIIEVALIISLMVAGGDNAAYLPRDTVFAAIMLILNGI 111
                 566677778889999999***************99865 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0056
     Goodbye  46 ekkeklkealkkilspiqllggiaaqgasmaFgPaslcfnAvsyLi 91 
                 ++ +++  +l +il +   l ++ ++  + ++ +a+l+f Av  L+
  EGE23675.1 131 KSASTALITLVSILVMTLILPNFTTSTTQGTYSSAQLMFVAVASLV 176
                 4555666677788888899999********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 2788.07
//
Query:       EGE23676.1  [L=440]
Description: putative hemolysin-related protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-39  134.5   2.7    5.8e-39  133.6   2.7    1.4  1  DUF21      Cyclin M transmembrane N-terminal domain
    4.7e-22   77.8   0.1    1.2e-21   76.4   0.1    1.8  1  CorC_HlyC  Transporter associated domain
    5.5e-08   33.1   1.3    6.2e-05   23.4   0.3    2.5  2  CBS        CBS domain
  ------ inclusion threshold ------
      0.016   14.4   0.0      0.026   13.7   0.0    1.3  1  Hus1       Hus1-like protein


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   2.7   1.3e-42   5.8e-39       2     176 .]      13     203 ..      12     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.3e-42
       DUF21   2 iivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae...........galavvia 89 
                 ii++l+l s+ffs +E+Al   ++++l+ lae+g+ +a+++lkl +n  ++ +t +ig + v il ++++++++  +++e           +++a++ +
  EGE23676.1  13 IILVLILTSSFFSISEIALAGSRKIKLKLLAESGDDRAEKVLKLQENSADFFATSQIGLNAVAILGGSVGESALRPYFSEwiglvyqgiwlDSIAFFSS 111
                 78999********************************************************************99999889999*************** PP

       DUF21  90 tvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil.....esesepavseeelkklveeseeegvieeee 176
                 +v+vtll+++ ++++Pk++a+ ++e++al+++ p+ + +++++Pl+w+++ ++++        +++++ ++ +++ ++v++++e+gv+ e+e
  EGE23676.1 112 FVLVTLLFILYADLIPKRIAMINPERVALVVINPILWTIRVVKPLAWIINTIADVTFrlfkfDTARDDSITFDDISAIVDAGAEAGVLMEQE 203
                 **************************************************************99************************7765 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   2.8e-25   1.2e-21       2      80 ..     354     432 ..     353     433 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 2.8e-25
                 EECTTEEEEETT-BHHHHHHHHTS.TTHH.CT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEEE- CS
   CorC_HlyC   2 eldegsylvdGslpldeleeelgl.elpe.edyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrvekl 80 
                 ++de+s+l+dG +p+d+++ +l++ e+p+ + yeTl+G+++ +l +iP++ + ve +  g++f+V+++d+ +I+++ v++l
  EGE23676.1 354 RRDENSWLIDGITPIDDVKHALDInEFPDwDHYETLAGFIMYRLRKIPRPADWVEHE--GFKFEVVDIDHYKIDQLLVTRL 432
                 689*********************99***999********************66666..*******************986 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00076       3.4       6      55 ..     225     275 ..     218     277 .. 0.84
   2 !   23.4   0.3   1.4e-08   6.2e-05       7      53 ..     290     336 ..     286     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00076
                 BSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTT..BEEEEEEHHHHHHHH CS
         CBS   6 trdvvtvppdttleealelmrekgvsrlPVVdedg..klvGivtlrDllral 55 
                 ++dvv++  +++ e + ++++++ +s ++V + ++  +++G+v  +D+l  +
  EGE23676.1 225 REDVVYFALSESEESIRQKIADYPYSKFLVCN-EHidQVIGYVDTKDILVRI 275
                 458999999999999*****9999****9983.44458**********9776 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.4e-08
                 SSCEEEETTSBHHHHHHHHHHHT..SSEEEEEETTTBEEEEEEHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekg..vsrlPVVdedgklvGivtlrDllr 53 
                 r+v+ +p + tl+e+l+++r ++    ++ V++e+  +vG++tl+D++ 
  EGE23676.1 290 RNVLIIPDTLTLSELLDKFRASNekM-AV-VINEYALVVGLITLSDIMM 336
                 68999**************9666345.66.78****666********86 PP

>> Hus1  Hus1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.7e-06     0.026     125     201 ..     268     342 ..     241     359 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.7e-06
        Hus1 125 thdiPvkvlseseveelkePelrdpdvsilLPdllqLkklvdkfkklssdlltlsankdGeL.klvvetd.lvrvsskw 201
                 t di v++lse+ + +l+e ++r++   +++Pd+l+L++l+dkf+   ++++ + +n++     l+  +d +++v  +w
  EGE23676.1 268 TKDILVRILSEQPIFQLNESTIRNV---LIIPDTLTLSELLDKFRAS-NEKMAVVINEYALVvGLITLSDiMMTVMGDW 342
                 569*******************765...568***************9.****999997754314444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3531.08
//
Query:       EGE23677.1  [L=259]
Description: short chain dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-42  145.3   0.0    1.7e-42  145.1   0.0    1.0  1  adh_short     short chain dehydrogenase
    7.5e-33  114.0   0.0    3.3e-32  111.9   0.0    1.7  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    6.8e-12   45.7   0.1    9.5e-12   45.2   0.1    1.1  1  KR            KR domain
     0.0012   18.3   0.0     0.0016   17.9   0.0    1.2  1  DUF1776       Fungal family of unknown function (DUF1776)
     0.0045   16.5   0.3      0.049   13.1   0.3    2.2  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1   0.0   4.7e-46   1.7e-42       1     192 [.      23     219 ..      23     222 .. 0.93

  Alignments for each domain:
  == domain 1  score: 145.1 bits;  conditional E-value: 4.7e-46
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTT..SHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvt..dreevealvekavkklgkldvLvnNAGi.tgsgpfse 95 
                 k++lvtGa++GIG+  a ++ak Ga+v++++++++kle v++e++++  a   ++++D++  d +++++l   ++k++g+ld + +NA+i    +p + 
  EGE23677.1  23 KIILVTGAGDGIGKVAALTYAKCGATVLLLGKTQSKLEVVYDEIEALgLALPAILPMDLEraDFAQMQKLAGLIEKEFGHLDGVLHNAAIlGTLTPLEM 121
                 79*********************************************64445666777776699**************************666777777 PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT.EEEEEEEESSBSSHHHHHHCT CS
   adh_short  96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg.irvnavaPGlvdTdmakelre 192
                 ++  ++e+v+ vN+t+vf+lt++++p + +++sG++v++sS +g  p a + aY+ sK av+g++  + +e ++    r n+++PG+++T+m++ + +
  EGE23677.1 122 YDPITFEQVMRVNMTAVFMLTQSLIPLLRAAQSGSVVFTSSSVGARPRAFWGAYALSKQAVEGMATIFTQETQNMTaLRFNCINPGATRTNMRAHAFP 219
                 77788*******************************************************************99888***************998765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   9.2e-36   3.3e-32       1     227 [.      29     252 ..      29     255 .. 0.89

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 9.2e-36
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE..E.EE--TT..SHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae..v.lecDVt..deeqvealveevvekfgklDilvnnagiapklkgpfletsr 92 
                   Ga  gIG+ +A ++a+ Ga+v+l    +++ + v +  e+lg +  + l++D +  d +q+++l+  ++++fg+lD++++na+i  +  +p++  + 
    EGE23677.1  29 GAGDGIGKVAALTYAKCGATVLLLGKTQSKLEVVYDEIEALGLAlpAiLPMDLEraDFAQMQKLAGLIEKEFGHLDGVLHNAAILGT-LTPLEMYDP 124
                   8889***********************999888888888899554535888886226679**************************9.9999999** PP

                   HHHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG.GTEEEEEEEE--BHCTG.GGGSTTH CS
  adh_short_C2  93 eefdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgp.kgiRvNavspgpikTla.asgikgf 185
                     f++++ vn++++f+l++ ++pl+++   gs+v +ss  + r  +   ay+ +K a+e+++  +  e  +    R N++ pg+++T++ a +++g+
    EGE23677.1 125 ITFEQVMRVNMTAVFMLTQSLIPLLRAAqsGSVVFTSSSVGARPRAFWGAYALSKQAVEGMATIFTQETQNmTALRFNCINPGATRTNMrAHAFPGE 221
                   ***********************7765558***************************************997889**************44455533 PP

                   HHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEE CS
  adh_short_C2 186 delleelearaplgrlgtpeevaeaalfLasdeasyitGqtl 227
                           + + l+   tpe++  ++++L+ deas+i Gq++
    EGE23677.1 222 --------DPYTLK---TPEDIMPVYVYLMTDEASGIKGQVI 252
                   ........334444...6**********************98 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.1   2.7e-15   9.5e-12       3     177 ..      25     203 ..      24     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 2.7e-15
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dklleem 100
                  l+tG+  g+G++ a + a+ ga +++ll++++++ e   ++i++l      +  ++++ +d +++++l   i++e++ + Gv+h A +l   ++le  
  EGE23677.1  25 ILVTGAGDGIGKVAALTYAKCGA-TVLLLGKTQSKLEVVYDEIEALGLALPAILPMDLERADFAQMQKLAGLIEKEFGHLDGVLHNAAILGtLTPLEMY 122
                 59*********998888776666.677889996666666666666666666888888888999************************999835889999 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEEEE-- CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsinwgl 177
                 +  ++eqv++  ++++  L + l +     +   +v++SS  g    a  ++Ya   + ++++a+  +++ ++ +++ + +
  EGE23677.1 123 DPITFEQVMRVNMTAVFMLTQSLIPllraAQSGSVVFTSSSVGARPRAFWGAYALSKQAVEGMATIFTQETQNMTALRFNC 203
                 9**************9999987655555599999********************************999999999988776 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.5e-07    0.0016     105     187 ..     116     195 ..     100     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.5e-07
     DUF1776 105 tgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrp 187
                  +p+e   + ++++++  ++ + ++++q+l+pll++    ++  +v++ s + +   +f +  al  +a++ +++++++e+++
  EGE23677.1 116 LTPLEMYDPITFEQVMRVNMTAVFMLTQSLIPLLRA---AQSGSVVFTSSSVGARPRAFWGAYALSKQAVEGMATIFTQETQN 195
                 67888888999************************9...7788888999999999999**********************993 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.3   1.4e-05     0.049       1     175 [.      25     206 ..      25     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..............EEEE--TT-HHHHHHHHHHH..T-SEEEE--S.---H.HHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..............elveldltdrsalerlfkee..qpdavihlAa.vggv.aass 81 
                 ilVtGa   iG+  +   ++ g +v+ l + +s+ +   +                 +l ++d+ + ++l+ l+++e  + d v+h Aa  g+  + ++
  EGE23677.1  25 ILVTGAGDGIGKVAALTYAKCGATVLLLGKTQSKLEVVYD--EiealglalpailpmDLERADFAQMQKLAGLIEKEfgHLDGVLHNAAiLGTLtPLEM 121
                 89**********************9999999555554443..24689****************************99999*********8776425566 PP

                 HSHHHH...HHHH....THHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEE CS
   Epimerase  82 edpadf...iekn....lqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnly 173
                  dp  f   ++ n    +++t+ l+  +r+a+   ++f sSs   G+ ++            +   +Ya++K+a+e +++ ++++ + n+++lr fn +
  EGE23677.1 122 YDPITFeqvMRVNmtavFMLTQSLIPLLRAAQSGSVVFTSSS--VGARPR------------AFWGAYALSKQAVEGMATIFTQETQ-NMTALR-FNCI 204
                 666544222444422224667777777778877788888882..332222............3468999999999999999999984.666666.3444 PP

                 ST CS
   Epimerase 174 Gp 175
                  p
  EGE23677.1 205 NP 206
                 44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2015.94
//
Query:       EGE23678.1  [L=230]
Description: putative phosphoglycolate phosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-34  117.3   0.0    9.1e-34  117.1   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    5.9e-16   59.4   0.0    1.5e-15   58.0   0.0    1.6  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.1e-09   38.9   0.0    1.9e-09   38.2   0.0    1.4  1  HAD             haloacid dehalogenase-like hydrolase
    3.3e-07   30.3   0.0    5.6e-07   29.5   0.0    1.3  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.047   13.4   0.0        7.3    6.2   0.0    2.4  3  Hydrolase_3     haloacid dehalogenase-like hydrolase
       0.13   12.4   0.0       0.95    9.6   0.0    2.1  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   0.0   3.1e-37   9.1e-34       1     177 [.       8     192 ..       8     193 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 3.1e-37
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee.........kieellrkyneekkkkevkpydgvkelLee 90 
                 + FDlDgTl+dt +  + +++++++++gls +se  +r+ +    r +++ ++ ++  +           ++ +l++y+        ++++g++ lLe+
  EGE23678.1   8 VFFDLDGTLIDTAPDFVRIIQQMCADEGLSAPSEAAIREQVSAGARAIVQLMFAEQLGQIcdddprllsRRQAFLDRYEIDVCV-DSRVFEGLEVLLEK 105
                 57************************************************99998665449999***99999999999999988.9************* PP

       HAD_2  91 LkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                 L+  ++  givT+k r  +e+ l++l++ s   v v+ +dv+++KPdpe++  a++k ++++  +iy+GD+ +Diea+++ag++++ 
  EGE23678.1 106 LEGYRIPWGIVTNKPRYLTENLLDKLNLSSRCGVLVCPDDVKNPKPDPEPLYLACQKIGVEPLACIYIGDHRRDIEAGRAAGMQTAI 192
                 ************************************************************************************975 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   5.1e-19   1.5e-15       1     210 []       5     187 ..       5     187 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 5.1e-19
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHH.HC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgal.tgfatfigrgayaigkpewltaldippdlgaaigsaqs.qg 97 
                 i +v+fD+dGTL+++ p  +++i++                       a +++s +  + +++     ++  g +  ++ + + ++lg+  ++  +   
  EGE23678.1   5 IQAVFFDLDGTLIDTAPDFVRIIQQM---------------------CADEGLSAPSeAAIRE-----QVSAGARAIVQLM-FAEQLGQICDDDPRlLS 76 
                 789***********************.....................5555555444588888.....8888888888888.66666666555444134 PP

                 HHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  98 rtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevam 195
                 r +a+l +r+  ++ +     v+++++ ++++L    i+++++t+  +   e ++++l+      + ++ d+++  kp+pe +  a+++++++p  ++ 
  EGE23678.1  77 RRQAFL-DRYEIDVCVDSR--VFEGLEVLLEKLEGYRIPWGIVTNKPRYLTENLLDKLNlSSRCGVLVCPDDVKNPKPDPEPLYLACQKIGVEPLACIY 172
                 445555.266666667777..*************9999*********************877779********************************** PP

                 EESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxx RF
   Hydrolase 196 VGDgvnDaaalaaAg 210
                 +GD   D++a++aAg
  EGE23678.1 173 IGDHRRDIEAGRAAG 187
                 **************8 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   6.3e-13   1.9e-09       1     188 []       8     184 ..       8     184 .. 0.67

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 6.3e-13
         HAD   1 alfDfDgTLldgdsle.lllrfllrrgaprlwralreklllal...frellrldraglaelleallaglseelaaelerfv.....aevirpklldpga 90 
                 ++fD+DgTL+d+ +++  +++++ +   + l +  ++++++++   +r + +l   ++ae+l  +  + + +l  + ++f+     +  +  +++ +g+
  EGE23678.1   8 VFFDLDGTLIDTAPDFvRIIQQMCAD--EGLSAPSEAAIREQVsagARAIVQL---MFAEQLGQICDDDP-RLLSRRQAFLdryeiDVCVDSRVF-EGL 99 
                 79**********88885666655544..4455566666666662223444444...66666666554443.233333333332222223333356.777 PP

         HAD  91 lellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                   ll++     ++  +v++ +r+l+e ll++l+    l++         g   l  ++  ++ k++    +la ++ g ++  ++++GD++ D+++ r
  EGE23678.1 100 EVLLEKLEGYRIPWGIVTNKPRYLTENLLDKLN----LSS-------RCGV--LVCPDDVKNPKPDPEPLYLACQKIGVEPLACIYIGDHRRDIEAGR 184
                 777777777778*********************....***.......4566..666666666788888888899999999999***********9865 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.9e-10   5.6e-07       4      62 ..     150     207 ..     148     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.9e-10
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHH CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepe 62 
                     KP pe +  a +++g++p ++++iGD  + Di+++++aG++++    G  +++dl++  
      EGE23678.1 150 KPDPEPLYLACQKIGVEPLACIYIGDH-RRDIEAGRAAGMQTAIAGFGYLSAADLASID 207
                     999************************.**************99998888888887655 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0024       7.3       1      12 [.       8      19 ..       8      46 .. 0.89
   2 ?   -3.0   0.0       1.6   4.9e+03      32      55 ..     111     134 ..      99     141 .. 0.74
   3 ?    4.6   0.0     0.008        24     195     227 ..     159     191 ..     155     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0024
                 EEEEIIIIIS-T CS
  Hydrolase_3  1 ialDlDGTLlns 12
                 +++DlDGTL++ 
   EGE23678.1  8 VFFDLDGTLIDT 19
                 79*******985 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.6
                  SEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  32 ikvviATGRslravlpvleelgld 55 
                  i   i T  + + ++++l++l+l+
   EGE23678.1 111 IPWGIVTNKPRYLTENLLDKLNLS 134
                  556688889999999999999876 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.008
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEE CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvA 227
                   ++++++++  +i +GD   Die   aag+  A
   EGE23678.1 159 ACQKIGVEPLACIYIGDHRRDIEAGRAAGMQTA 191
                  5899999***************98777777666 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00032      0.95       2      52 ..       9     132 ..       8     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00032
                  EEESTTTSE.........................................................................ETTEE-TTHHHHHHHH CS
  Hydrolase_6   2 lfDidGvLw.........................................................................rgdkaipgaaealnal 26 
                  +fD+dG+L+                                                                          ++++++g + +l+ l
   EGE23678.1   9 FFDLDGTLIdtapdfvriiqqmcadeglsapseaaireqvsagaraivqlmfaeqlgqicdddprllsrrqafldryeidvcVDSRVFEGLEVLLEKL 106
                  78888888888888888888888888888888888888888888888888888888888888777777777777777777767889999999999999 PP

                  HHTT-EEEEEE---SS-HHHHHHHHH CS
  Hydrolase_6  27 raagkpvvllTNnsskseeeyakkle 52 
                  +   +p  ++TN+ +   e++++kl+
   EGE23678.1 107 EGYRIPWGIVTNKPRYLTENLLDKLN 132
                  9999***********99999999983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1716.79
//
Query:       EGE23679.1  [L=270]
Description: 3-demethylubiquinone-9 3-methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-20   72.9   0.0    4.3e-20   72.2   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    7.5e-20   71.3   0.0    1.1e-19   70.7   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    4.2e-19   69.0   0.1      8e-19   68.1   0.1    1.5  1  Methyltransf_11  Methyltransferase domain
    2.4e-16   60.2   0.3    5.2e-16   59.1   0.3    1.6  1  Methyltransf_25  Methyltransferase domain
      9e-14   52.0   0.2    1.8e-13   51.0   0.1    1.6  1  Methyltransf_12  Methyltransferase domain
      3e-09   36.6   0.0    4.4e-09   36.0   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.1e-08   34.3   0.0    1.4e-08   34.0   0.0    1.1  1  Methyltransf_9   Protein of unknown function (DUF1698)
      9e-08   31.7   0.0    1.3e-07   31.2   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
    7.5e-07   28.8   0.1    1.1e-06   28.3   0.1    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    9.7e-05   22.0   0.1    0.00017   21.2   0.1    1.4  1  MTS              Methyltransferase small domain
     0.0002   21.4   0.0    0.00031   20.7   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
     0.0018   17.9   0.0     0.0028   17.3   0.0    1.2  1  NodS             Nodulation protein S (NodS)
     0.0051   17.1   0.1      0.011   16.1   0.1    1.5  1  AdoMet_MTase     Predicted AdoMet-dependent methyltransferase
  ------ inclusion threshold ------
       0.01   14.9   0.0       0.02   14.0   0.0    1.4  1  DREV             DREV methyltransferase
      0.042   13.5   0.0      0.062   12.9   0.0    1.4  1  TPMT             Thiopurine S-methyltransferase (TPMT)
      0.064   12.8   0.0       0.11   12.0   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   3.8e-23   4.3e-20      23     161 ..      75     226 ..      53     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 3.8e-23
  Methyltransf_23  23 ggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae......kakkaqkdqfdeq.eaaepqgkfdlIvlrevlehvpdppellrqiatll 109
                       ++v+diGcG Gil+ +++ +g+sv g+Dl +e+ + a       +++   + ++ ++  aae +  fd+++++e+lehvpdp + ++  ++ll
       EGE23679.1  75 AKSVVDIGCGGGILAHSMAVRGASVLGIDLGDENLKAAGihaaktGIDGLDFRCVAAEeLAAEHASGFDVVTCMEMLEHVPDPSAIVQACYDLL 168
                      579***************************988666555999999888888888766614566777**************************** PP

  Methyltransf_23 110 kpgGylllseplasl....kedrllldwlylvpagrhi..sffsarslkelleeaGle 161
                      kpgG+++ s+++++      +   ++++l lv++g+h   +f++  +l +++   G++
       EGE23679.1 169 KPGGVCVMSTINRNPksylFAIIGAEYVLNLVDKGTHDwhKFITPAELDQMAMSVGFQ 226
                      **********998766655577778888888888866555999999999999999996 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0     1e-22   1.1e-19       5     113 ..      76     180 ..      73     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1e-22
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                      ++v+D+GCG G l++ +a     +a v GiD   e ++ A  +a+k g+d + F+   +eel    + + fD++++ e l +++dp +i +   
       EGE23679.1  76 KSVVDIGCGGGILAHSMA---VRGASVLGIDLGDENLKAAGIHAAKTGIDGLDFRCVAAEELAAE-HASGFDVVTCMEMLEHVPDPSAIVQACY 165
                      789***************...45799***********************************7643.3489************************ PP

  Methyltransf_31  99 rvlkpggilliedpr 113
                      ++lkpgg++++++++
       EGE23679.1 166 DLLKPGGVCVMSTIN 180
                      **************9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.1   7.1e-22     8e-19       1      96 []      79     176 ..      79     176 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 7.1e-22
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-T.T-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaeklpfed.nsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      +d+GcG+G+la  +a rga+v+g+Dl +e lk+a  +a + g+  ++f++  ae+l  e  + fD+v++ e+l+hv+dp+++++ ++ +LkpgG
       EGE23679.1  79 VDIGCGGGILAHSMAVRGASVLGIDLGDENLKAAGIHAAKTGIdGLDFRCVAAEELAAEHaSGFDVVTCMEMLEHVPDPSAIVQACYDLLKPGG 172
                      59********************************999999999989**********8777357******************************* PP

                      EEEE CS
  Methyltransf_11  93 llvi 96 
                      ++v+
       EGE23679.1 173 VCVM 176
                      **85 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.3   4.7e-19   5.2e-16       1      97 []      78     172 ..      78     172 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 4.7e-19
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpf.edgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      v+d+GcG G l+  +a r+  a+v+g+D+ +e l+aa  +a++ g+  ++f++  ae+l   +++ fD+v+++ +l+h++d    ++++ ++++
       EGE23679.1  78 VVDIGCGGGILAHSMAVRG--ASVLGIDLGDENLKAAGIHAAKTGIdGLDFRCVAAEELAAeHASGFDVVTCMEMLEHVPD--PSAIVQACYDL 167
                      89**************995..*************************************98625669******888***985..569******** PP

                      EEEEE CS
  Methyltransf_25  93 LkpgG 97 
                      LkpgG
       EGE23679.1 168 LKPGG 172
                      ****9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1   1.6e-16   1.8e-13       1      98 [.      79     173 ..      79     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.6e-16
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      ++iGcG G l++ ++ +  +++++g+D+  + + +a+  +a++ + +   ++  a + l  +  s fD+v++ + l+h++d+ ++++ +++lLk
       EGE23679.1  79 VDIGCGGGILAHSMAVR--GASVLGIDLGDENL-KAAGIHAAKTGIDGLDFRCVAAEELAAEHASGFDVVTCMEMLEHVPDPSAIVQACYDLLK 169
                      69************999..**************.55555555444333333333333333333479**************************** PP

  Methyltransf_12  95 pgGr 98 
                      pgG+
       EGE23679.1 170 PGGV 173
                      ***8 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   3.9e-12   4.4e-09      20     151 ..      41     176 ..      22     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 3.9e-12
                      HHHHHHHHHTTTHHH....HHH.HHHHH--S.--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--T CS
  Ubie_methyltran  20 yDlmndvlslgihrl....Wkk.fveklvav.krgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqana 107
                      +D m +  sl+  +     W +  v+++ ++ + +++v+D+ +G g la +++    +   v ++D+ ++ Lk +  ++ ++g   ++f +  a
       EGE23679.1  41 WDRMGAFKSLHDINPlrlnWIEdRVNDCYGSsLVAKSVVDIGCGGGILAHSMAV---RGASVLGIDLGDENLKAAGIHAAKTGIDGLDFRCVAA 131
                      4667766666533320111544466666654144559*********98876643...345899******************************* PP

                      TT-TTS-.T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 108 eeLpfed.dsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvv 151
                      eeL  e    fDvvt    l  v+D +  ++  y  lkpGG  v+
       EGE23679.1 132 EELAAEHaSGFDVVTCMEMLEHVPDPSAIVQACYDLLKPGGVCVM 176
                      ****998688*******************************7664 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.3e-11   1.4e-08      58     220 ..      16     179 ..       1     188 [. 0.81

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.3e-11
                     EE-SS..-HHHHHHHHHHHHTT---..-CE-EE.ETTEEE--SEEHHHHHHHHGGGS..--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---H CS
  Methyltransf_9  58 iekeeqlsegekkklekllralmPW..rkGPfs.lfGvdidteWrsdwkWdrvlphl.sdlkgrtildvGcgnGyhlwrmvgegaklvvGidPse 148
                      ++++++++ +  ++ k  +    W  r G f+ l+ ++     r +w  drv+    s l  ++++d+Gcg G   + m+ +ga +v+Gid   
      EGE23679.1  16 SDTNQAINNADFDEISKFTKLADEWwdRMGAFKsLHDIN---PLRLNWIEDRVNDCYgSSLVAKSVVDIGCGGGILAHSMAVRGA-SVLGIDLGD 106
                     456678888888888888888888867778885366554...579999999998754389*********************9998.589***888 PP

                     HHHHHHHHHHCCTTTTSSEEEE---GGGS-T..---EEEEEEES-GGG-S-HHHHHHHHHCTEEEEEEEEEEEE CS
  Methyltransf_9 149 lfliqfeavrkllgedqrahllplgieqlpe..leafdtvfsmGvlyhrrsPldhllqlkdqlvkgGelvletl 220
                       l          g d   +   ++ e+l +   ++fd+v  m +l h   P   +++  d l+ gG  v+ t+
      EGE23679.1 107 ENLKAAGIHAAKTGIDGLDFRC-VAAEELAAehASGFDVVTCMEMLEHVPDPSAIVQACYDLLKPGGVCVMSTI 179
                     7777666555667778888877.8889998755778**********************************9986 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.2e-10   1.3e-07      65     172 ..      77     184 ..      73     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.2e-10
                 EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---....--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT CS
        CMAS  65 tlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde....kvdrvvsvgafehvgkenydtffkklkkllked 159
                  ++diGcG G l++ ++ r +++v+g+ l +e+ k a  + +++++ +  + +    e+l+      +d v  ++++ehv      + ++++++llk++
  EGE23679.1  77 SVVDIGCGGGILAHSMAVR-GASVLGIDLGDENLKAAGIHAAKTGI-DGLDFRCVAAEELAAehasGFDVVTCMEMLEHVPDP--SAIVQACYDLLKPG 171
                 689****************.***************99999998885.45566666666665545569*************876..5789********** PP

                 -EEEEEEEEE--H CS
        CMAS 160 Gllllhtitslhk 172
                 G+ ++ ti +  k
  EGE23679.1 172 GVCVMSTINRNPK 184
                 *******987655 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   9.5e-10   1.1e-06     161     263 ..      74     181 ..      50     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 9.5e-10
        PrmA 161 egeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevalseellk..eekadvivaNILaevl...ielaedikklvkeg 253
                   ++v+D+G+G GiLa   a  ga +v+++D+ +  +k+a   a++ +++   ++  ++eel +  ++ +dv+ +  + e +     +++  + l+k+g
  EGE23679.1  74 VAKSVVDIGCGGGILAHSMAVRGA-SVLGIDLGDENLKAAGIHAAKTGIDGlDFRCVAAEELAAehASGFDVVTCMEMLEHVpdpSAIVQACYDLLKPG 171
                 3579************88887776.7***********************998888777777764346789*****8777777344579*********** PP

        PrmA 254 gllilSGilk 263
                 g++++S i +
  EGE23679.1 172 GVCVMSTINR 181
                 ******9865 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.5e-07   0.00017      32     103 ..      75     147 ..      68     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.5e-07
                 CSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivs 103
                 +++v+D+GcG G+l+ ++a +  ++  ++l d++ +A  +  +     +l+ ++va + l++ +   fd++ +
  EGE23679.1  75 AKSVVDIGCGGGILAHSMAVRGASVLgIDLGDENLKAAGIHAAKTGIDGLDFRCVAAEELAAEHASGFDVVTC 147
                 578******************999888********99988888888888998888888888777789998865 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.8e-07   0.00031      13      80 ..      61     122 ..      48     169 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.8e-07
  Methyltransf_32  13 vakllkel.akesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnk 80 
                      +++ +++   ++  a++vvD+G+G g L+  +a      + +v+gid+ +e+ ++a   a+k g  + +
       EGE23679.1  61 IEDRVNDCyGSSLVAKSVVDIGCGGGILAHSMAV----RGASVLGIDLGDENLKAAGIHAAKTG--I-D 122
                      55555555455667899*****************....59*************99998888887..4.4 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.5e-06    0.0028      45     170 ..      76     202 ..      63     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-06
        NodS  45 adalevGcaaGalterlapyckrltvvdvveeaiararervkes....shiswivsdvqqfstdekfdlivvaevlyyiedvaelraavrnlvsllapd 139
                  +++++Gc  G l+  +a+   ++  +d+ +e ++ a     ++     +   + ++    +    fd++ + e+l ++ d  ++        +ll+p+
  EGE23679.1  76 KSVVDIGCGGGILAHSMAVRGASVLGIDLGDENLKAAGIHAAKTgidgLDFRCVAAEELAAEHASGFDVVTCMEMLEHVPDPSAIVQ---ACYDLLKPG 171
                 5799************************98877665554444421100456666666666777889**********99999987755...566789**9 PP

        NodS 140 gqlvfGsardavcrrwGh.vaGaetvlallne 170
                 g  v+ s+++ + +++   ++Gae vl+l+++
  EGE23679.1 172 GVCVM-STINRNPKSYLFaIIGAEYVLNLVDK 202
                 99887.889999999875268*******9976 PP

>> AdoMet_MTase  Predicted AdoMet-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   9.6e-06     0.011      59      89 ..      75     105 ..      56     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.6e-06
  AdoMet_MTase  59 etsfvdvgcgngllvyvlaaegykgygidlr 89 
                    +s vd+gcg g+l + +a+ g    gidl 
    EGE23679.1  75 AKSVVDIGCGGGILAHSMAVRGASVLGIDLG 105
                   6799************************986 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05      0.02      92     188 ..      72     178 ..      63     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
        DREV  92 dqedkklldlGaGdGeitkrvaptfeevyatelset.........mrdrlkkkkynvlsale.lqetdvkldlilclnlldrcfdplklledirsalep 180
                     k ++d+G G G +++ +a     v   +l  +          +  ++ ++++ ++a e  +e    +d+++c+++l+   dp  +++  +  l+p
  EGE23679.1  72 SLVAKSVVDIGCGGGILAHSMAVRGASVLGIDLGDEnlkaagihaAKTGIDGLDFRCVAAEElAAEHASGFDVVTCMEMLEHVPDPSAIVQACYDLLKP 170
                 556788999999999999999988888666555432111111111345577789********55677889****************************9 PP

        DREV 181 ngrvival 188
                  g  +++ 
  EGE23679.1 171 GGVCVMST 178
                 99988875 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.6e-05     0.062      45      75 ..      82     112 ..      38     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.6e-05
                 T-TT-HHHHHH-BTTEEEEEE-S-HHHHHHH CS
        TPMT  45 lCGkaldlvwlAeqgrevvGvelselAvekf 75 
                 +CG+++ ++ +A +g +v+G++l +  ++++
  EGE23679.1  82 GCGGGILAHSMAVRGASVLGIDLGDENLKAA 112
                 8**********************99988874 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.11      16      97 ..      77     163 ..      71     181 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
        MetW  16 rvldlGcGdGellellkeekqvdgrGleldeegvaec....vakGlsviq..gdldkdlenfedksfdyvvlsqtlqatrnpkevlde 97 
                  v+d+GcG G l + ++  ++ +  G++l +e+++++     + G+  ++    + ++l+  + + fd+v     l  + +p+ +++ 
  EGE23679.1  77 SVVDIGCGGGILAHSMA-VRGASVLGIDLGDENLKAAgihaAKTGIDGLDfrCVAAEELAAEHASGFDVVTCMEMLEHVPDPSAIVQA 163
                 599*******9999985.599999999999888875421114556665431145678899999999*****9999*999999999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2141.83
//
Query:       EGE23680.1  [L=44]
Description: hypothetical protein EA1_08592 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 382.34
//
Query:       EGE23681.1  [L=52]
Description: hypothetical protein EA1_08597 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.086   13.0   0.6       0.36   11.0   0.6    1.8  1  PapD-like  Flagellar-associated PapD-like


Domain annotation for each model (and alignments):
>> PapD-like  Flagellar-associated PapD-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6     2e-05      0.36      22      64 ..       3      41 ..       1      48 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2e-05
   PapD-like 22 yvltvellnvstvpcRyrvrlpavvkkllsveYkrqFvaPGlt 64
                y l+  l nv+tv  R+r rl++    ++ ++ ++  v  G+ 
  EGE23681.1  3 YSLSYFLSNVATVFLRFRCRLCK----FFAISVRPTLVYFGMI 41
                67778899**************9....6667767666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 453.10
//
Query:       EGE23682.1  [L=206]
Description: DSBA oxidoreductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-19   69.1   3.2    1.1e-14   54.6   0.3    2.1  2  DSBA           DSBA-like thioredoxin domain
    1.3e-07   31.9   0.0    1.9e-07   31.4   0.0    1.1  1  Thioredoxin_4  Thioredoxin
      1e-05   25.6   0.1    1.7e-05   24.9   0.1    1.3  1  DUF1525        Protein of unknown function (DUF1525)
    0.00034   20.6   0.5      0.029   14.4   0.0    2.5  2  Thioredoxin_3  Thioredoxin domain
    0.00079   19.4   0.1     0.0061   16.5   0.1    2.1  2  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.032   14.7   0.0      0.098   13.1   0.0    1.7  1  Thioredoxin_2  Thioredoxin-like domain
      0.038   13.6   0.0      0.082   12.5   0.0    1.6  1  DUF953         Eukaryotic protein of unknown function (DUF953
       0.11   12.1   0.1       0.18   11.5   0.1    1.3  1  DUF4874        Domain of unknown function (DUF4874)


Domain annotation for each model (and alignments):
>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   5.5e-06     0.012       2      41 ..      46      86 ..      45      92 .. 0.87
   2 !   54.6   0.3   5.1e-18   1.1e-14      90     183 ..      92     187 ..      88     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.5e-06
                EEEEEBTTBHHHHHHHHHHHHHHHHCCT.EEEEEEE-SSSC CS
        DSBA  2 vdeffDvlCPyCylgkerleklaarspd.vkvvlrpfelag 41
                v eff + CP+Cy  ++ ++k a+ +pd v +   p  + +
  EGE23682.1 46 VREFFWYGCPHCYHLEPHMQKWAKTRPDdVAFFQTPAAMNP 86
                899***********************666999988876655 PP

  == domain 2  score: 54.6 bits;  conditional E-value: 5.1e-18
                 HHHHHHHHHHHGHHHHHHHHHHHHHTSSS-..TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEETTCEEEESSS CS
        DSBA  90 arlllaagaeglaekvvrelfealwsegqa..itddqellevaekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvvdgkrmvfGad 183
                 ar ++aa++ + +ek  ++lf+a++++g    i+++qel     + G+d +++d +++s+av+ ++++  aaa ++g++GvP+vvv gk++v+G d
  EGE23682.1  92 ARGFYAAQQLDAQEKTHQALFDAVHKDGNRniISSQQELGNWYASKGIDKAKFDSLYNSFAVTTKIERAKAAATRYGLSGVPAVVVHGKYVVSGED 187
                 7999*********************998655599999********************************************************987 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   8.3e-11   1.9e-07      15     151 ..      44     182 ..      41     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 8.3e-11
                    EEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..---S.TTTHHHHHHHTT--TTHHHHHHHHHHHHTHHHHTTS-HHHHH...... CS
  Thioredoxin_4  15 vtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldkek.eslkaamaarcageespeaflaikallysqqeewaeslkela...aea 106
                    ++v e+  + CphC ++e +++k  +     ++v f   + ++++      ++  aa+ +  ++++  + ++a+ ++  ++   s++el    a++
     EGE23682.1  44 IVVREFFWYGCPHCYHLEPHMQKWAKTR--PDDVAFFQTPAAMNPVWeVGARGFYAAQQLDAQEKTHQALFDAVHKDGNRNIISSQQELGnwyASK 137
                    6899*******************99998..99*****99998887653334455555555544444455555555566666666666666555779 PP

                    ..HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEETTEEE CS
  Thioredoxin_4 107 ldkdekfeacleeekldalveaeskeakkagiestPtfiingekv 151
                    + +++kf++  ++  + +++e++++ a++ g++++P +++ g+ v
     EGE23682.1 138 GIDKAKFDSLYNSFAVTTKIERAKAAATRYGLSGVPAVVVHGKYV 182
                    999******99*****************************99986 PP

>> DUF1525  Protein of unknown function (DUF1525)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   7.7e-09   1.7e-05      24      98 ..     100     186 ..      84     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.7e-09
     DUF1525  24 elDaverleeelsaelpadpeqaaalvrqr.........lnspdwaaleeqie...qayqgvadawqlgikkiPAVvvdrraVvYGe 98 
                 +lDa+e+ ++ l+  + +d ++     +q+         ++++++  l++  +   +  ++ a+a ++g+  +PAVvv  ++Vv Ge
  EGE23682.1 100 QLDAQEKTHQALFDAVHKDGNRNIISSQQElgnwyaskgIDKAKFDSLYNSFAvttKIERAKAAATRYGLSGVPAVVVHGKYVVSGE 186
                 79**********************9999999*******98888888888886511145689999********************997 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.025        55       9      26 ..      53      70 ..      42      77 .. 0.87
   2 !   14.4   0.0   1.3e-05     0.029      35      65 ..     156     187 ..     146     197 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.025
                   SSTTCHHHHHHHHHHCHC CS
  Thioredoxin_3  9 gCakCpklekavkeaaae 26
                   gC++C++le  +++ a++
     EGE23682.1 53 GCPHCYHLEPHMQKWAKT 70
                   8*******9999998876 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.3e-05
                    CCTTHHHH.HHCT-SSSSEEECTTCEEEESS- CS
  Thioredoxin_3  35 kvtdfeei.ekygVmsvPalvidgkvvvsGkv 65 
                    k++  +    +yg   vPa+v+ gk vvsG+ 
     EGE23682.1 156 KIERAKAAaTRYGLSGVPAVVVHGKYVVSGED 187
                    55555566689*******************64 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.7e-06    0.0061      18      56 ..      42      80 ..      34      90 .. 0.85
   2 ?    0.2   0.0      0.33   7.5e+02      58      78 ..     157     177 ..     141     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.7e-06
                 SSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEE CS
  Thioredoxin 18 kklvlveFyApwCghCkalaPeleklaeelkdkvklakv 56
                 +  v+ eF+   C+hC +l+P+++k a++  d+v + + 
   EGE23682.1 42 DVIVVREFFWYGCPHCYHLEPHMQKWAKTRPDDVAFFQT 80
                 456777999999**********************99876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.33
                  TTTSHHHHHHTT-SSSSEEEE CS
  Thioredoxin  58 vdenedlakkyevegiPtlkl 78 
                  ++  +  a++y+ +g+P++++
   EGE23682.1 157 IERAKAAATRYGLSGVPAVVV 177
                  456677899999999999855 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.4e-05     0.098      16      86 ..      53     177 ..      44     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.4e-05
  Thioredoxin_2  16 dCpyCkklkkelkel.....ddvtvrvllfp..lkpsfepkavaiwcakekkkafkd....................................... 65 
                    +Cp C  l+  ++++     ddv ++    p  ++p +e  a+ ++ a++   +  +                                       
     EGE23682.1  53 GCPHCYHLEPHMQKWaktrpDDVAFF--QTPaaMNPVWEVGARGFYAAQQLDAQ--Ekthqalfdavhkdgnrniissqqelgnwyaskgidkakf 144
                    7**************98877777666..55578888888888888888888633..23478889999999999*********************** PP

  Thioredoxin_2  66 ............ieenvelarkygvrgtPtivf 86 
                                ie+ ++ a +yg++g+P++v+
     EGE23682.1 145 dslynsfavttkIERAKAAATRYGLSGVPAVVV 177
                    ******************************996 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.7e-05     0.082      38      81 ..      54      97 ..      50     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
                SHHHHHHHHHHHHHHHH-SS-EEEEEEE---HHHHT-TTSHHHH CS
      DUF953 38 CPdCvkaepvieealkeapedvklvrvdvGdrevWkdpanpfRk 81
                CP C + ep +++  k  p dv + +  +   +vW   a  f  
  EGE23682.1 54 CPHCYHLEPHMQKWAKTRPDDVAFFQTPAAMNPVWEVGARGFYA 97
                ***********************************998888865 PP

>> DUF4874  Domain of unknown function (DUF4874)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     8e-05      0.18       4      62 ..      93     155 ..      91     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8e-05
     DUF4874   4 rGfyhlyevelke...aselekvrkeeevtlvlleiyLkdfrdkd.lseealdklekiletlr 62 
                 rGfy + +++++e   ++  + v+k+ + +++  +  L ++ +++ ++++++d l + ++   
  EGE23682.1  93 RGFYAAQQLDAQEkthQALFDAVHKDGNRNIISSQQELGNWYASKgIDKAKFDSLYNSFAVTT 155
                 9************77666667778879************9876666*********99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1526.43
//
Query:       EGE23683.1  [L=167]
Description: hypothetical protein EA1_08607 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-25   89.2   2.1    3.2e-25   88.9   2.1    1.1  1  DUF615           Protein of unknown function (DUF615)
  ------ inclusion threshold ------
      0.011   15.0   0.8      0.018   14.3   0.7    1.4  1  Noc2             Noc2p family
       0.02   14.7   0.6      0.027   14.3   0.6    1.4  1  Phage_integrase  Phage integrase family
      0.031   14.6   1.4      0.045   14.1   1.4    1.4  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 


Domain annotation for each model (and alignments):
>> DUF615  Protein of unknown function (DUF615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   2.1   7.1e-29   3.2e-25       2     133 ..      10     136 ..       9     156 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 7.1e-29
      DUF615   2 rpSksqlKreaealqklgeeLaaLskkqlkklpldeelldalleakrikshrearrRqlqyigkllReadveairaalealknkseeetaalhelerwr 100
                 r+S++++K+  e+lq+l e La+Lskkql++lp++e  ld+l+   +i sh  a++Rq++++gkl+ e++ +a+ +al +++       ++++++e w 
  EGE23683.1  10 RVSRTEIKKSHERLQALSEPLAKLSKKQLANLPVSEYFLDELKHLTNIDSH-AAKNRQIKRVGKLIIEENRHALTQALFECQFT----PEQIAKIETWY 103
                 79*************************************************.*****************************998....67899****** PP

      DUF615 101 drLiaeddaaleelleeypevDrqeLRqlirna 133
                 drL  +d+++++++++++++++ + + ql+  +
  EGE23683.1 104 DRLKLSDESTIKQFVKQFKKAEYNSIYQLLLWI 136
                 ****************************98765 PP

>> Noc2  Noc2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.7   4.1e-06     0.018     229     298 ..      49     120 ..      19     121 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.1e-06
        Noc2 229 vqLkrflkstkneklrkqlkqLvek.leenskfieekRekvefspkdreeveafekelk.sektPlgkyvks 298
                  +Lk++++  +++  ++q+k++ +  +een +  ++   +++f+p++ +++e++ ++lk s+++ ++++vk+
  EGE23683.1  49 DELKHLTNIDSHAAKNRQIKRVGKLiIEENRHALTQALFECQFTPEQIAKIETWYDRLKlSDESTIKQFVKQ 120
                 56888888888888899999998852799******************************9*********997 PP

>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.6   5.9e-06     0.027      48     122 ..       2      70 ..       1     123 [. 0.73

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.9e-06
                      EECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTSBSSBETTSSB--HHHHHHHHHHHHHHC CS
  Phage_integrase  48 ldlengvilvheregKgskeravplseealellkellskaleeaeksellfaskrgkplsrqtvrkafkraveea 122
                      +d+ +  ++v  +e+K+s+er  +lse +++l k++l++     + se+ + +   k+l++ +  +a +r  ++ 
       EGE23683.1   2 IDWSKMDMRVSRTEIKKSHERLQALSEPLAKLSKKQLANL----PVSEYFLDEL--KHLTNIDSHAAKNRQIKRV 70 
                      678888899999999************************9....7777776666..5555555544444444443 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.4     1e-05     0.045       6      94 ..      18     120 ..      14     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
  CPSase_L_D3   6 ptdeRifaiaealrrglsveeiheltkidpwFLekleelvelekelkkkkk..........eldeellreakklGfsDkqiaell......eeeeeee 87 
                   ++eR+ a+ e l  +ls +++++l  + ++FL++l++l++++++ +k+++          e +++l + + +  f+ +qia++       + ++e++
   EGE23683.1  18 KSHERLQALSEPLA-KLSKKQLANLP-VSEYFLDELKHLTNIDSHAAKNRQikrvgkliieENRHALTQALFECQFTPEQIAKIEtwydrlKLSDEST 113
                  56789999999998.78999999985.899***************999999999999998555555566678999*******9865555552234444 PP

  CPSase_L_D3  88 vrelrkk 94 
                  +++  k+
   EGE23683.1 114 IKQFVKQ 120
                  5444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1350  (0.075297); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1260.63
//
Query:       EGE23684.1  [L=120]
Description: tetratricopeptide repeat family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-23   80.5  19.6    2.5e-11   43.9   2.8    3.1  3  Sel1      Sel1 repeat
  ------ inclusion threshold ------
      0.043   14.1   8.1        2.7    8.3   2.0    3.1  2  TPR_12    Tetratricopeptide repeat
       0.53   10.5  15.3       0.56   10.5   0.2    5.2  6  TPR_2     Tetratricopeptide repeat
       0.81    9.7  10.7         14    5.7   0.9    4.6  4  TPR_10    Tetratricopeptide repeat
        1.8    8.5  14.6         10    6.2   0.3    4.5  4  TPR_1     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   2.8     7e-15   2.5e-11       4      38 .]       1      33 [.       1      33 [. 0.97
   2 !   34.8   2.9   4.8e-12   1.7e-08       1      38 []      34      69 ..      34      69 .. 0.94
   3 !   12.1   0.4   6.8e-05      0.24       1      37 [.      70     103 ..      70     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 7e-15
        Sel1  4 myrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38
                my+L+   +y+ G+gv+++++kA+ wy+kAA++G+
  EGE23684.1  1 MYNLA--VAYFQGDGVKQNYQKAHAWYQKAADMGH 33
                9****..888************************9 PP

  == domain 2  score: 34.8 bits;  conditional E-value: 4.8e-12
        Sel1  1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38
                a+A y+LG   +y++G+gv ++++ A+ ++++AA+qG+
  EGE23684.1 34 ASAKYNLG--SMYFYGQGVAANQSHALALWQQAAKQGN 69
                6899****..777************************7 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 6.8e-05
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqG 37 
                 a A+++ G   +y++   +++++  A +w+  ++++G
  EGE23684.1  70 AKAAHNIG--VYYYKSN-LEQNKAAAKQWFLVSCQLG 103
                 689*****..555***8.9***********9877776 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.5    0.0013       4.7      24      55 ..      16      44 ..       1      49 [. 0.60
   2 ?    8.3   2.0   0.00076       2.7      24      58 ..      52      83 ..      33      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
      TPR_12 24 ellekaleiarrllGpdhpltattlrnLgrly 55
                ++++ka++ ++++   d  + a++ +nLg +y
  EGE23684.1 16 QNYQKAHAWYQKA--AD-MGHASAKYNLGSMY 44
                4556666666555..43.35566666666665 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00076
      TPR_12 24 ellekaleiarrllGpdhpltattlrnLgrlyral 58
                ++  +al++++++   +  + a + +n+g +y+++
  EGE23684.1 52 ANQSHALALWQQA--AKQ-GNAKAAHNIGVYYYKS 83
                67889*****999..655.79***********987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.085     3e+02       5      13 ..       2      10 ..       1      12 [. 0.84
   2 ?   10.5   0.2   0.00016      0.56      15      28 ..      16      29 ..      14      31 .. 0.89
   3 ?    1.0   0.1      0.16   5.9e+02       2      13 ..      35      46 ..      34      48 .. 0.84
   4 ?    0.4   0.0      0.26   9.3e+02      19      29 ..      56      66 ..      53      68 .. 0.82
   5 ?    3.3   0.4      0.03   1.1e+02       1      15 [.      70      84 ..      70     102 .. 0.89
   6 ?   -2.7   0.0       2.5     9e+03       7      19 ..     104     116 ..      99     116 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.085
       TPR_2  5 ynlGlayyk 13
                ynl+ ay++
  EGE23684.1  2 YNLAVAYFQ 10
                999999996 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00016
       TPR_2 15 gdyeeAleafekAl 28
                ++y++A+++++kA 
  EGE23684.1 16 QNYQKAHAWYQKAA 29
                79***********7 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.16
       TPR_2  2 ealynlGlayyk 13
                 a ynlG  y++
  EGE23684.1 35 SAKYNLGSMYFY 46
                678******997 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.26
       TPR_2 19 eAleafekAle 29
                 Al+++++A +
  EGE23684.1 56 HALALWQQAAK 66
                69999999986 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.03
       TPR_2  1 aealynlGlayyklg 15
                a+a +n+G  yyk++
  EGE23684.1 70 AKAAHNIGVYYYKSN 84
                68899*******975 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 2.5
       TPR_2   7 lGlayyklgdyee 19 
                 l + ++k +++++
  EGE23684.1 104 LSDGCIKHDNFDK 116
                 5566778888875 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.9    0.0038        14      15      31 ..      15      31 ..       1      34 [. 0.69
   2 ?    2.1   0.1     0.055     2e+02       2      13 ..      34      45 ..      33      49 .. 0.80
   3 ?   -0.5   0.0      0.36   1.3e+03      27      35 ..      56      64 ..      51      68 .. 0.72
   4 ?    3.8   0.1     0.015        55       2      15 ..      70      83 ..      70      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0038
      TPR_10 15 rgrydeAealleealai 31
                 ++y++A a++++a ++
  EGE23684.1 15 KQNYQKAHAWYQKAADM 31
                46999999999999765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.055
      TPR_10  2 AsslnNLanalr 13
                As+  NL+ +++
  EGE23684.1 34 ASAKYNLGSMYF 45
                78999******4 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.36
      TPR_10 27 ealairrrl 35
                +ala+++++
  EGE23684.1 56 HALALWQQA 64
                467777765 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.015
      TPR_10  2 AsslnNLanalrqr 15
                A + +N+++++++ 
  EGE23684.1 70 AKAAHNIGVYYYKS 83
                6689*******986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.013        46       5      13 ..       2      10 ..       1      11 [. 0.89
   2 ?    6.2   0.3    0.0028        10      15      27 ..      16      28 ..      14      31 .. 0.89
   3 ?    4.3   0.3     0.011        40       1      12 [.      34      45 ..      34      47 .. 0.87
   4 ?    1.6   0.4     0.078   2.8e+02       1      14 [.      70      83 ..      70      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.013
                HHHHHHHHH CS
       TPR_1  5 ynlGnayfk 13
                ynl++ayf+
  EGE23684.1  2 YNLAVAYFQ 10
                9******96 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0028
                T-HHHHHHHHHHH CS
       TPR_1 15 gkydeAleyyekA 27
                ++y++A + y+kA
  EGE23684.1 16 QNYQKAHAWYQKA 28
                79**********9 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.011
                HHHHHHHHHHHH CS
       TPR_1  1 akalynlGnayf 12
                a a ynlG +yf
  EGE23684.1 34 ASAKYNLGSMYF 45
                6789*******9 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.078
                HHHHHHHHHHHHHT CS
       TPR_1  1 akalynlGnayfkl 14
                aka  n+G+ y+k 
  EGE23684.1 70 AKAAHNIGVYYYKS 83
                67888******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 857.49
//
Query:       EGE23685.1  [L=200]
Description: hypothetical protein EA1_08617 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   18.6   1.0     0.0027   17.7   1.0    1.4  1  MIT        MIT (microtubule interacting and transport) domain
  ------ inclusion threshold ------
      0.055   13.6   0.1       0.13   12.4   0.1    1.7  1  TPR_2      Tetratricopeptide repeat
       0.15   12.2   0.0       0.26   11.4   0.0    1.3  1  SICA_beta  SICA extracellular beta domain


Domain annotation for each model (and alignments):
>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.0   4.5e-07    0.0027       2      33 ..      48      79 ..      47      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.5e-07
         MIT  2 dkAlelvkkAveeDnagnyeeAlelYkealel 33
                ++A e+++ Av +D+a +y+ A++ Y++a el
  EGE23685.1 48 QQADEFFELAVRYDQASDYPMAVREYQKAAEL 79
                6888999**********************986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.3e-05      0.13       1      30 [.      50      79 ..      50      81 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
       TPR_2  1 aealynlGlayyklgdyeeAleafekAlel 30
                a+  ++l+  y ++ dy  A++ ++kA el
  EGE23685.1 50 ADEFFELAVRYDQASDYPMAVREYQKAAEL 79
                56789**********************998 PP

>> SICA_beta  SICA extracellular beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.4e-05      0.26      69     120 ..     125     176 ..     123     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.4e-05
   SICA_beta  69 kaCkllaagLkklkkikkaksskkkkeknksfkqtmgCllLkayakklkeka 120
                 +aC ++ +gL ++k ++++++++  ++ ++    ++ C++ +++ +k+k+++
  EGE23685.1 125 AACIFMGKGLLQIKATHSHSGNRPPNKATQKPPIILACIITNQILNKIKQQQ 176
                 69***********9997777777777777888889**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1558.00
//
Query:       EGE23686.1  [L=221]
Description: type I restriction modification DNA specificity protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-31  108.3   1.1    5.7e-31  108.0   1.1    1.1  1  Methylase_S  Type I restriction modification DNA specificity 


Domain annotation for each model (and alignments):
>> Methylase_S  Type I restriction modification DNA specificity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   1.1   3.2e-35   5.7e-31       5     167 ..      27     201 ..      24     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 3.2e-35
                  EEEEHHHHEEE.EE-----TT..GGTTT--EEEE-HH.HCCT........EE-HHHHCCTT---B-TT-EEEE-S.SSTT-EEEESS-BEE-TTEEEE CS
  Methylase_S   5 evvkLgdvfei.kkgktpkkk..elkengkypyirag.ilnn........kvvkdglgykkkyilpkgdilissr.atiGkvayrdkkyylnqsvivl 89 
                  e + Lg+v++   +g tpk+   e+++ng++p++r+    n         k+ + g+++++++ +p + ++i++  at+G+v +++ + ++nq +  +
   EGE23686.1  27 EWRALGEVAKKiSSGGTPKTGipEYYNNGEIPWLRTQeV-NFndiydtgvKIIEPGVKNSSAKWIPANCVIIAMYgATVGRVGINKIPMTTNQACANI 123
                  6679*****999*************************54.4449******66666666666666665555555544********************** PP

                  EESTTT--HHHHHHHHHHCHHHHHHHCCSSTTT---HHHHCC-EEEE--HHHHHHHHHHHHHHHH.HHHHHHHHHHHHH CS
  Methylase_S  90 ipknkkkineflylylllklkklkslsvgstqpkltkenlkkikIplPpleeQkkIakiLsqldn.tielekkikneie 167
                  ++++++ + ++ y++l+++++++ks ++ + q++++ + +kk+kIp+Ppl++Q +I+ iL+++d  t  + +++++ei+
   EGE23686.1 124 EVNEEIAEYRYVYYCLANQYEYIKS-LGTGSQTNINAQIVKKLKIPIPPLSIQSQIVAILDTFDTlTQSISEGLPKEIK 201
                  **65555556666666688888888.5888888********************************9999999*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1610.69
//
Query:       EGE23687.1  [L=295]
Description: hypothetical protein EA1_08627 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-81  273.4   0.0    2.4e-81  273.1   0.0    1.0  1  ATP_bind_2   P-loop ATPase protein family
     0.0033   17.5   0.0     0.0053   16.8   0.0    1.3  1  Dynamin_N    Dynamin family
      0.007   16.6   0.0       0.04   14.2   0.0    2.2  3  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.013   15.9   0.0       0.03   14.7   0.0    1.6  1  AAA_16       AAA ATPase domain
      0.039   13.0   0.1      0.066   12.3   0.1    1.3  1  T2SSE        Type II/IV secretion system protein
      0.043   13.7   0.2       0.12   12.2   0.1    1.7  2  RsgA_GTPase  RsgA GTPase
      0.054   12.8   0.0       0.83    8.9   0.0    2.1  2  Zeta_toxin   Zeta toxin
      0.066   13.7   0.0       0.13   12.7   0.0    1.4  1  ABC_tran     ABC transporter
      0.071   12.8   0.0      0.098   12.4   0.0    1.3  1  PRK          Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> ATP_bind_2  P-loop ATPase protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.1   0.0   1.2e-84   2.4e-81       3     279 ..      10     290 ..       8     293 .. 0.90

  Alignments for each domain:
  == domain 1  score: 273.1 bits;  conditional E-value: 1.2e-84
                 EEEEEESTTSSHHHHHHHHHHHTXEEEBSXXGGGHHHHHHHHH...TTTXXEEEEESTTTSXS.SHHHHHHHHHTSXT..TSEEEEEEEEXXHHHHHHH CS
  ATP_bind_2   3 lvivsGlsGaGksvalraledlGyyvvdnlPlsllpklvdllkeansreskvavvldvrnree.saelleqaeellek..aitprilfleadddtlvrr 98 
                 +++vsG+sG+Gk+  l++led Gyy  dnlPls++p  ++ l  ++s++ ++av +dvr+ +   ++  ++ ++l++   + +  +l+  a+dd+lv r
  EGE23687.1  10 IIVVSGRSGSGKTSVLNTLEDFGYYPLDNLPLSIVPLAIEKLV-NDSQIHRIAVGIDVRTPKAdLSNFGQVYDSLIQTygKTALSVLYTTAQDDVLVAR 107
                 89**********************************9999988.789999*********97651455556667777765567789************** PP

                 CTSSSXSSTTSXXXSSHHH.HHHHHHHTHHHHHTXSEEEECTTXXHHHHHHHHHHHHHXXXSSS-EEEEEEEEGGG---TT-SEEEE-TTS--GGGSTT CS
  ATP_bind_2  99 yedtrrshPlsakdlsleg.iakerelleplraradlildtselsvrelreklrkalagnsekeltvvvesfGfkyGiPldadlvfdvrflPnPhwvee 196
                 y+ trr+hPl a   +l   i+ke+ llep+  +ad+ +dts l+++el+++lr++l+ ++  ++ v+v sfGf++G P dad+vfdvr lPnPhw+ +
  EGE23687.1 108 YDATRRVHPLMAMAGNLPNaIQKETALLEPIACHADIKIDTSLLNIHELKNSLRQHLGVDN--HIIVNVLSFGFRHGTPKDADFVFDVRTLPNPHWQMD 204
                 **********9988777555*************************************9875..7899******************************** PP

                 TTTS-TTSHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHSS-SEEEEEEEESSSSSHHHHHHHHHHHHHHH...TT-EEEEEET CS
  ATP_bind_2 197 lrPltGkdkevaeyvlkrtevaefieklrsllslvlpslkregksyltiaiGctGGkhrsvaiaeqladyfrs...dgktvvarhr 279
                 lrPltG+d++v+e+  + + v+e+ + + ++l  +lp + ++++ ++tiaiGctGGkhrsv +++++++ +     d+ +v+++hr
  EGE23687.1 205 LRPLTGLDAPVQEFFAQFSAVHEMTHDISTFLLKWLPDFIENNRHFVTIAIGCTGGKHRSVFVSQAVGEILTGhlpDKMQVNVKHR 290
                 *****************************************************************999998752213444446777 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.7e-06    0.0053       1      75 [.      11      86 ..      11     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-06
                EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE.CCT---CCS...SSEEEET-EB--CHHHHHHHHHH CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql.geeeeaseravkeelkekekkledfsevreeieke 75
                i+v G   sGK+Svln L    + p ++ p +  pl +++  ++++++  av ++++  +++l++f +v + + + 
  EGE23687.1 11 IVVSGRSGSGKTSVLNTLEDFGYYPLDNLPLSIVPLAIEKlVNDSQIHRIAVGIDVRTPKADLSNFGQVYDSLIQT 86
                89************************************75488999998899999999999999999999887765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     2e-05      0.04       6      27 ..       9      30 ..       6      64 .. 0.93
   2 ?   -1.8   0.0       1.7   3.5e+03      17      51 ..      88     114 ..      85     167 .. 0.53
   3 ?   -2.0   0.0         2   3.9e+03      99     131 ..     227     258 ..     218     263 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlle 27
                +i+vv G sG+GKT +l++l +
  EGE23687.1  9 SIIVVSGRSGSGKTSVLNTLED 30
                79****************9976 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
      AAA_22  17 GKTtllrrlleqldeeakaeeerpevvfvtlpsst 51 
                 GKT l   ++   d        ++ v++++++   
  EGE23687.1  88 GKTALSVLYTTAQD--------DVLVARYDATRRV 114
                 77777777777765........4444444444443 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2
      AAA_22  99 Eaqh.lrseealeeLrsllnlsrkgvqliLvGtp 131
                 E+ h + s  +l++L ++ + +  ++  i +G++
  EGE23687.1 227 EMTHdI-STFLLKWLPDFIE-NNRHFVTIAIGCT 258
                 444545.6777778855544.5777777777776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.5e-05      0.03      25      45 ..       9      29 ..       4      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
      AAA_16 25 elvllsGesGvGKsslvrell 45
                +++++sG sG+GK+s++++l 
  EGE23687.1  9 SIIVVSGRSGSGKTSVLNTLE 29
                799**************9985 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.3e-05     0.066     126     149 ..       5      28 ..       1      32 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
       T2SSE 126 vrerglilvsGgTgsGKttllyal 149
                 ++ + +i+vsG  gsGKt +l++l
  EGE23687.1   5 IAPNSIIVVSGRSGSGKTSVLNTL 28 
                 455789****************96 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.1e-05      0.12      99     120 ..       8      29 ..       3      34 .. 0.88
   2 ?   -2.3   0.0       1.8   3.6e+03      54      86 ..      69     101 ..      48     110 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.1e-05
                  TSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinall 120
                  ++++v+ G SG GK++++n+l 
   EGE23687.1   8 NSIIVVSGRSGSGKTSVLNTLE 29 
                  5789****************96 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
                  E-GGG--HHHHHHHHHHHHHHTTSEEEE--TTT CS
  RsgA_GTPase  54 nKiDlleeeeeleelkeelealgyevllvsakt 86 
                   K+Dl +  + +++l +++ ++ ++vl++ a++
   EGE23687.1  69 PKADLSNFGQVYDSLIQTYGKTALSVLYTTAQD 101
                  588888888888888888888888888887764 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00042      0.83      18      38 ..      10      30 ..       3      33 .. 0.88
   2 ?    1.3   0.0     0.085   1.7e+02      28      60 ..      88     117 ..      86     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00042
  Zeta_toxin 18 lillgGqpGAGKselaellkd 38
                +i+++G +G+GK+++++ l+d
  EGE23687.1 10 IIVVSGRSGSGKTSVLNTLED 30
                6899************99875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.085
  Zeta_toxin  28 GKselaellkdelerqgnvvrldpDdlRelhPe 60 
                 GK++l+ l +++   q++v++   D  R+ hP 
  EGE23687.1  88 GKTALSVLYTTA---QDDVLVARYDATRRVHPL 117
                 899998888887...89***************6 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.7e-05      0.13       9      32 ..       6      29 ..       4      37 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.7e-05
                ETTSEEEEEESTTSSHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  9 kegekvaivGenGaGKStLlklla 32
                 +++++++ G++G+GK+++l++l 
  EGE23687.1  6 APNSIIVVSGRSGSGKTSVLNTLE 29
                678999***************986 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.9e-05     0.098       1      21 [.      10      30 ..      10      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.9e-05
         PRK  1 vIgvagsSGaGkttvarklek 21
                +I v+g SG+Gkt+v ++le+
  EGE23687.1 10 IIVVSGRSGSGKTSVLNTLED 30
                799**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2227.21
//
Query:       EGE23688.1  [L=280]
Description: pantoate--beta-alanine ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-98  328.9   0.0    2.1e-98  328.8   0.0    1.0  1  Pantoate_ligase  Pantoate-beta-alanine ligase
  ------ inclusion threshold ------
      0.029   14.2   0.0       0.57   10.1   0.0    2.4  2  NIL              NIL domain


Domain annotation for each model (and alignments):
>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.8   0.0  2.4e-102   2.1e-98       2     265 ..       3     275 ..       2     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: 328.8 bits;  conditional E-value: 2.4e-102
                      EEESHHHHHHHHHHHHHTT-EEEEEEE-SS-GHHHHHHHHHHHHHSSEEEEEEEEEGGGSSTTSCTTTSEEEHHHHHHHHHHTT-SEEE---HH CS
  Pantoate_ligase   2 iiktvaelrellkelrkegkkvglVpTmGaLHeGHlsLvkaakeendvvvvSiFvNplqFgpkedlekYPrtleaDlelleeagvdlvFaPsve 95 
                      i++t+++l++ l+ lr++  k++lVpTmG+LH+GHlsLv+ ak+++dvvvvSiFvNp+qFg+ ed+++YPrtl++D+++l++agv lvFaPsv+
       EGE23688.1   3 ICHTIKDLKNKLNPLRNQ--KIALVPTMGNLHDGHLSLVNLAKQHADVVVVSIFVNPTQFGAGEDFASYPRTLDDDCQKLTKAGVALVFAPSVD 94 
                      899*********999654..7************************************************************************* PP

                      HHST.....EEEEECSGGCSTHHHHSTTHHHHHHHHHHHHHHHHT-SEEEEEGGGHHHHHHHHHHHHHTT-SSEEEEEEEEBETTSEBTTGGGG CS
  Pantoate_ligase  96 emyp.....ttvevkelsevlegasrpghFrGVatvvtkLfnivqpdrayfGqKDaqqlavirrlvkdlnlpveivavpivReedgLAlSSRNk 184
                      emyp     +++   ++s++l+g++rp+hF+GV  vv+kLfniv+pd+a+fG+KD+qqla+i +lv++ln++++i++ +ivR++dgLAlSSRN+
       EGE23688.1  95 EMYPvyppnVQILSGSISKILCGQTRPTHFDGVGLVVSKLFNIVRPDVAVFGKKDYQQLAIIYQLVQELNFEIDIIGGEIVRADDGLALSSRNQ 188
                      ***9999888888889****************************************************************************** PP

                      GS-HHHHHHTTHHHHHHHHHH.........BHHHHHHHHHHHHHTHTTEEEEEEEEEETTTSS..BSSB.SEEEEEEEEEETTEEEEEEE CS
  Pantoate_ligase 185 yLseeerkaAlvlykaLkaak.........eaealkeaakeeleeeelekadyveivdaetleeleleeekkavllvaakvgkvrLiDni 265
                      yL+e+e++ A+ l +aL++++         + + + +++k+el++++++ +dy+++ ++ +l++ +++++k++v+l+a+++g +rL+Dn+
       EGE23688.1 189 YLTEQEHAIAPRLAQALQQLAgglksanfaDFDMMIQKTKDELTHDGFT-VDYLQVLNQ-QLQP-ASRHDKNLVILTACYLGGARLLDNL 275
                      *********************9998776655556668888888888865.8******98.6778.5566799*****************7 PP

>> NIL  NIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.034   3.1e+02      27      38 ..     103     114 ..      88     120 .. 0.83
   2 ?   10.1   0.0   6.4e-05      0.57      12      39 ..     151     178 ..     142     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.034
                 EEEEEEEEEEEE CS
         NIL  27 evnIlqGsveri 38 
                 +v Il+Gs+++i
  EGE23688.1 103 NVQILSGSISKI 114
                 799******988 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 6.4e-05
                 -SS-HHHHHHHHHT-EEEEEEEEEEEET CS
         NIL  12 avePllshlvrqlglevnIlqGsveriq 39 
                  +  ++++lv++l+ e+ I++G + r +
  EGE23688.1 151 QQLAIIYQLVQELNFEIDIIGGEIVRAD 178
                 56679*****************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2051.61
//
Query:       EGE23689.1  [L=280]
Description: 3-methyl-2-oxobutanoate hydroxymethyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-101  339.5   1.5   1.4e-101  339.3   1.5    1.0  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase
     0.0058   16.1   0.2      0.069   12.6   0.0    2.4  3  PEP_mutase       Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.3   1.5  1.5e-105  1.4e-101       2     258 ..      17     275 ..      16     276 .. 0.97

  Alignments for each domain:
  == domain 1  score: 339.3 bits;  conditional E-value: 1.5e-105
  Pantoate_transf   2 vtvkdlrkmkeegekiamlTaydattAklvdeagvdviLVGDslgmvvlgyestlpvtleemiyhtkaVargakralvvadlPfgsyeaskeqa 95 
                      +t+++l+k+k+eg+ +++lT+y+a++A++++ a++d+iL+GDslgmvv+g++stlpv +++m+yht+ V+rg+++al+++dlPf+sy a+ ++a
       EGE23689.1  17 ITLSTLNKLKAEGKTFSCLTCYEASFAHAMQLADIDTILIGDSLGMVVQGQSSTLPVGVQDMVYHTQNVVRGNSHALILCDLPFMSY-ATLSDA 109
                      6999***********************************************************************************.9***** PP

  Pantoate_transf  96 lenAarllkeggadavKleggaevaetvkalveagipVmgHiGltPqsvnalggykvqgkteeeaeklledakaleeaGafalvlEavpaelak 189
                      +++A  ++++ ga++vK+egg+e+ +tvk l+++g+pV+ H+GltPqsvn++ggykvqgkt+++a+kl++d++a+ +aGa +l+lE+vpa+lak
       EGE23689.1 110 ITSAKAVMQA-GANVVKIEGGSELSDTVKVLTNNGVPVCVHLGLTPQSVNVFGGYKVQGKTDAQADKLMRDCTAVVNAGASLLLLECVPAPLAK 202
                      *********9.*********************************************************************************** PP

  Pantoate_transf 190 eiteklsiptIGIGAGaacdGqvlvlhDllgltekfkpkfvkkyaelae....sieeavkaYaeevkegsFPa 258
                      ++te+ ++p+IGIGAG ++dGqvlv+hD+lg+++++ +kfvk++++  +    +i  a+kaY+++vk+++FP+
       EGE23689.1 203 AVTERFDVPVIGIGAGVDTDGQVLVMHDMLGIYTRKPAKFVKNFLTDDSnqtkDIVGAFKAYHHAVKQRAFPT 275
                      ********************************************9765522226777***************8 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.15   1.3e+03       2      66 ..      23      87 ..      22      99 .. 0.72
   2 !   12.6   0.0   7.8e-06     0.069     151     200 ..     102     151 ..      87     166 .. 0.84
   3 ?    0.7   0.0     0.032   2.9e+02     152     196 ..     170     213 ..     157     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.15
  PEP_mutase  2 raLhakgeplvlpnawDalsakiveeagfkalatsSlavaaslGvpDgeelpleellaavraiae 66
                ++L+a+g+++  +  + a  a +++ a ++ + ++      ++G+  +  + ++ ++ +++++++
  EGE23689.1 23 NKLKAEGKTFSCLTCYEASFAHAMQLADIDTILIGDSLGMVVQGQSSTLPVGVQDMVYHTQNVVR 87
                57888888888888888888888888888888877666666777777777777777777776666 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 7.8e-06
  PEP_mutase 151 agagleeaieRaraYaeAGAdgvfvpglqkdaeiaelvaavdvplnvvpl 200
                  +a+l +ai+ a+a ++AGA++v + g+++ ++  +++++ +vp+ v ++
  EGE23689.1 102 SYATLSDAITSAKAVMQAGANVVKIEGGSELSDTVKVLTNNGVPVCVHLG 151
                 678899***************************77777788899999882 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.032
  PEP_mutase 152 gagleeaieRaraYaeAGAdgvfvpglqkdaeiaelvaavdvpln 196
                 +a+ ++ ++ ++a ++AGA+ ++  ++  +   +++++++dvp++
  EGE23689.1 170 DAQADKLMRDCTAVVNAGASLLLLECVPAPL-AKAVTERFDVPVI 213
                 455666667799999****999998877665.4778888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2017.55
//
Query:       EGE23690.1  [L=162]
Description: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-31  106.9   0.0    9.4e-31  106.6   0.0    1.1  1  HPPK      7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase


Domain annotation for each model (and alignments):
>> HPPK  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   5.2e-35   9.4e-31       1     111 [.       5     136 ..       5     137 .. 0.93

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 5.2e-35
                 EEEEEE-S....SSHHHHHHHHHHHHHH....EEEEE---EEE--S...SS-GEEEEEEEEEESS-HHHHHHHHHHHHHHTT--C..STS-BS-EEEEE CS
        HPPK   1 ylalGsNl....gdreanleealealee....kvvkvSslyetepv...dqpdFlNavvevetelspeellealkeiEkelgrer..rwgpRtlDlDil 86 
                 +++lG N+    g +++++ +a++a+++    + vk+Ssly+++++   dqpdF+Nav++++t+l p ell+ ++ +E++++r+r  +wg+R+lD+Dil
  EGE23690.1   5 FIGLGGNItnelGTPTEHIINAVQAFKQsphfTDVKMSSLYQSKAFgitDQPDFINAVLSANTSLPPLELLDFCQGLEQTAKRVRlrHWGERSLDVDIL 103
                 699****97666778999********887766568***********9988**********************************7657*********** PP

                 EET........EEES-TTGGG-HHHHHHHHHHC CS
        HPPK  87 lyg........ltlPhprlaeraFvlvplaela 111
                 lyg        lt+Ph+ l er+Fvl p++e++
  EGE23690.1 104 LYGdkrihherLTVPHQGLFERNFVLIPMLEID 136
                 *******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1228.53
//
Query:       EGE23691.1  [L=599]
Description: poly(A) polymerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-30  105.9   0.4    1.3e-29  103.2   0.0    2.5  3  PolyA_pol        Poly A polymerase head domain
    1.3e-26   93.0   0.8    1.3e-26   93.0   0.8    2.3  2  PolyA_pol_arg_C  Polymerase A arginine-rich C-terminus
    4.6e-11   42.3   0.0    1.6e-10   40.6   0.0    1.9  2  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym


Domain annotation for each model (and alignments):
>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   2.2e-33   1.3e-29       1     126 []      49     175 ..      49     175 .. 0.92
   2 ?   -1.1   0.0      0.39   2.4e+03      44      79 ..     286     321 ..     270     334 .. 0.69
   3 ?   -2.2   0.0      0.89   5.3e+03      15      43 ..     560     588 ..     557     596 .. 0.72

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 2.2e-33
                 EEEETHHHHHHHTT---CEEEEEECS-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEEEEECCEECEEEEEE---SSHHH.......HHHHHHCTSS CS
   PolyA_pol   1 lylvGGaVRDlllgkepkDvDlatdaapeelakllrkkvkeallsgeefqtiavlekkqllevatfRlekdesdarnpesekste....sleeDlkrRD 95 
                 +y+vGG VRD llg  pkD+D +tda+p+e++ ++  + ++    g++fq+++v  +++ +evatfR+  + + +   +     +    ++e+D +rRD
  EGE23691.1  49 AYIVGGGVRDSLLGLAPKDFDAVTDARPHEIKAIFGGRCRI---IGRRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDnvwgDIEQDFARRD 144
                 6**********************************888877...6***********************997777777666555557888********** PP

                 BGGGS-EEECTTTCEE-TTSHHHHHHTTEE- CS
   PolyA_pol  96 ftiNalaynlnkgkvlDlfgGikdLkskvir 126
                 f+iNal+y++ kg+vlD++g +kd++s+ +r
  EGE23691.1 145 FSINALYYQPIKGEVLDFCGALKDIDSHTLR 175
                 **************************99886 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.39
                 EEETTTTCCCCEECCEEEEECCEECEEEEEE---SS CS
   PolyA_pol  44 lsgeefqtiavlekkqllevatfRlekdesdarnpe 79 
                 +++  f  +a+l+++ l+++a+++ +  + + ++ +
  EGE23691.1 286 SVNPAFFYAAMLWENYLYQLAKYKKRGLPFHEAQIK 321
                 337889999999999999999999887655554444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.89
                 ---CEEEEEECS-HHHHHHHHHHHHT-EE CS
   PolyA_pol  15 kepkDvDlatdaapeelakllrkkvkeal 43 
                 +++k vD +td +p+ ++++ + k+ + +
  EGE23691.1 560 HQSKQVDGVTDIEPKLVENQAKPKRTRRR 588
                 67789999999999888887766666544 PP

>> PolyA_pol_arg_C  Polymerase A arginine-rich C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.8   2.1e-30   1.3e-26       2     119 ..     312     434 ..     311     435 .. 0.92
   2 ?   -1.9   2.0      0.56   3.3e+03     102     118 ..     562     588 ..     517     591 .. 0.50

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 2.1e-30
  PolyA_pol_arg_C   2 glspvdAlalAadevleeqvkkvaiprrftadmreIWalQprlekrqgkrakrllehprFraayDfLlLraesgev.....leelaewWtefqe 90 
                      gl+ ++A  +Aa++ +++q  k+aip+  ++ + +IW lQp+l + + +++++l + p+Fraa+DfL+Lr+  + +     ++++++wW+++q+
       EGE23691.1 312 GLPFHEAQIKAAEKTIDAQRIKTAIPKFAEQFITDIWLLQPKLVNPRVRDIANLERLPKFRAAFDFLVLREGYDTHplsepTQNMGAWWQAYQD 405
                      8899******************************************************************855544677789************ PP

  PolyA_pol_arg_C  91 adeeereelikelkeeeakkkkrrrrrrr 119
                      a++ +++ +i++ + ++++ k+rr r+ +
       EGE23691.1 406 ASAVDKAIMIEAFGTQAGTPKRRRDRNAK 434
                      ***************99886777776655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.56
  PolyA_pol_arg_C 102 elkeeeakk............kkrrrrrr 118
                      +++ +                k +r rrr
       EGE23691.1 562 SKQVDG--VtdiepklvenqaKPKRTRRR 588
                      222222..123555566665433333333 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   2.6e-14   1.6e-10       1      57 [.     202     259 ..     202     264 .. 0.96
   2 ?   -4.0   0.0       2.3   1.4e+04      31      40 ..     503     512 ..     501     513 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 2.6e-14
  PolyA_pol_RNAbd   1 gFtIepeTaaairklap.lLkkispeRifeEllKlLlsghpeaglelLretgLlkylf 57 
                      gF+++++ a+++++ ++ lL+++s++R+++E++K++ +g+  + l lL+e g+++ l+
       EGE23691.1 202 GFEFDQDLANQFHQDNWtLLEQVSAHRLYDETQKMFGGGYLTPLLPLLFEHGAMSSLM 259
                      8****************************************************99875 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.3
  PolyA_pol_RNAbd  31 llKlLlsghp 40 
                      ++KlL +++p
       EGE23691.1 503 FEKLLANDEP 512
                      89***99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4465.72
//
Query:       EGE23692.1  [L=112]
Description: competence protein ComEA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-19   69.2   0.1    3.5e-19   68.8   0.1    1.2  1  HHH_3     Helix-hairpin-helix motif
    9.7e-10   37.8   0.0    0.00027   20.6   0.0    2.2  2  HHH       Helix-hairpin-helix motif
    0.00013   22.5   0.1       0.07   13.7   0.0    2.3  2  HHH_5     Helix-hairpin-helix domain
    0.00075   19.5   0.1       0.05   13.7   0.0    2.2  2  HHH_2     Helix-hairpin-helix motif
     0.0084   16.4   0.0      0.012   15.9   0.0    1.4  1  HHH_6     Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.026   13.9   0.0      0.037   13.4   0.0    1.3  1  T2SSK     Type II secretion system (T2SS), protein K
       0.15   12.4   0.1         14    6.2   0.0    2.2  2  HHH_8     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.1   1.3e-22   3.5e-19       3      64 ..      47     108 ..      45     109 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.3e-22
       HHH_3   3 avgvdiNtAsaeeLqklpGlgpklAknIvayReknGpfksreeLlkvkglgpktfeqlagfl 64 
                 ++  +iNtAs ++   l G+g k+A++Iv+yR+++G+f s++ L++vkg+gp+ + +++++l
  EGE23692.1  47 SKLLNINTASQADFISLVGVGHKTAQAIVDYRHEHGKFDSVQSLMNVKGIGPAILNKNRHRL 108
                 6789******************************************************9987 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.1e-07   0.00027       2      30 .]      49      77 ..      48      77 .. 0.94
   2 !   15.3   0.0   5.1e-06     0.013       1      22 [.      78      99 ..      78     103 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.1e-07
                HHHHHTSSHHHHHTSTT-SHHHHHHHHHH CS
         HHH  2 leglipasreeLlalPGVGpktAeaIlsy 30
                l ++++as ++  +l GVG ktA+aI +y
  EGE23692.1 49 LLNINTASQADFISLVGVGHKTAQAIVDY 77
                679***********************998 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 5.1e-06
                SHHHHHTSSHHHHHTSTT-SHH CS
         HHH  1 sleglipasreeLlalPGVGpk 22
                ++e  + +s+  L+ ++G+Gp+
  EGE23692.1 78 RHEHGKFDSVQSLMNVKGIGPA 99
                68999****************7 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.7e-05      0.07      18      52 ..      41      75 ..      33      78 .. 0.77
   2 !    6.6   0.0    0.0048        12       3      14 ..      89     100 ..      86     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.7e-05
                HHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHH CS
       HHH_5 18 llsaGiesvedlaaadveeLakipGiGkktAerii 52
                l+s+  + +  +  a+++++ ++ G+G ktA+ i+
  EGE23692.1 41 LISTQKSKLLNINTASQADFISLVGVGHKTAQAIV 75
                555544445567778999***************98 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0048
                 HHHTSTT--HHH CS
       HHH_5   3 eLlsvsGiGpkt 14 
                 +L+ v+GiGp++
  EGE23692.1  89 SLMNVKGIGPAI 100
                 7999*****987 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     2e-05      0.05      26      57 ..      49      80 ..      39      83 .. 0.87
   2 ?    3.8   0.0     0.024        61      33      47 ..      86     100 ..      83     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
       HHH_2 26 ldaLkkasleeLlevddiGeeiAqsivefFen 57
                l ++ +as  + +++ ++G ++Aq+iv++ ++
  EGE23692.1 49 LLNINTASQADFISLVGVGHKTAQAIVDYRHE 80
                668999**********************9765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.024
       HHH_2  33 sleeLlevddiGeei 47 
                 s++ L +v++iG+ i
  EGE23692.1  86 SVQSLMNVKGIGPAI 100
                 6899********987 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.6e-06     0.012      32      61 ..      63      92 ..      35     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.6e-06
       HHH_6 32 ikglgeaaaerivaeRekegpfksledlar 61
                + g+g+++a++iv+ R+++g+f s++ l++
  EGE23692.1 63 LVGVGHKTAQAIVDYRHEHGKFDSVQSLMN 92
                569***********************9986 PP

>> T2SSK  Type II secretion system (T2SS), protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.5e-05     0.037     183     233 ..      48      98 ..      36     111 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
       T2SSK 183 tkiNiNta.saevLaAlveglslsqaqrllaaRpea.gfrsvadflaasalsg 233
                   +NiNta +a  ++ +      + aq++++ R e   f+sv+ +++ + ++ 
  EGE23692.1  48 KLLNINTAsQADFISLVGV--GHKTAQAIVDYRHEHgKFDSVQSLMNVKGIGP 98 
                 579*****66666665555..599*********88768****99999855444 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0053        14      42      65 ..      52      76 ..      36      79 .. 0.80
   2 ?    4.7   0.0     0.015        38      43      62 ..      85     103 ..      77     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0053
                HHHHTT.HCTTSTT--HHHHHHHHH CS
       HHH_8 42 itslee.eltklpgiGkkiaakiee 65
                i+++ + ++ +l g+G k+a+ i  
  EGE23692.1 52 INTASQaDFISLVGVGHKTAQAIVD 76
                55553448999**********9976 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.015
                 HHHTTHCTTSTT--HHHHHH CS
       HHH_8  43 tsleeeltklpgiGkkiaak 62 
                 +s++  l  ++giG++i +k
  EGE23692.1  85 DSVQS-LMNVKGIGPAILNK 103
                 56565.999*******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 961.26
//
Query:       EGE23693.1  [L=279]
Description: nucleoside triphosphate pyrophosphohydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-34  116.0   0.2    2.5e-22   78.9   0.1    2.3  2  MazG       MazG nucleotide pyrophosphohydrolase domain
    2.5e-08   34.2   0.4    0.00012   22.4   0.0    2.5  2  PRA-PH     Phosphoribosyl-ATP pyrophosphohydrolase
      0.001   19.3   0.1     0.0062   16.8   0.0    2.3  2  MazG-like  MazG-like family
  ------ inclusion threshold ------
      0.032   14.1   0.0      0.073   12.9   0.0    1.5  1  PUB_1      PNGase/UBA- or UBX-containing domain
       0.11   12.9   0.6       0.71   10.2   0.6    2.1  1  Mis14      Kinetochore protein Mis14 like


Domain annotation for each model (and alignments):
>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.1   6.9e-26   2.5e-22       1      74 []      27     105 ..      27     105 .. 0.95
   2 !   35.1   0.0   3.2e-12   1.1e-08       6      69 ..     173     244 ..     168     247 .. 0.86

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 6.9e-26
                 --HHHHHHHHHHHHHHHHHHHHTT-HH.....HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-GGGG CS
        MazG   1 qtpetllaylleEvgEvaeaIkkedrd.....eleeELGDvLlqvlflaniaeeeggidledvaetileKlerRhphvf 74 
                 qt+ +l +y +eEv+E++eaI+++d +     +l++ELGDvLlqv+f+ ++ +e g++d++ v+ ++ +Kl+rRhphvf
  EGE23693.1  27 QTNASLQKYAIEEVYELIEAIQTDDGSafateQLKSELGDVLLQVVFHTHLYQEAGRFDMSAVILALQDKLIRRHPHVF 105
                 7899*******************776677777**********************************************8 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 3.2e-12
                 HHHHHHHHHHHHHHHHHT............T-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
        MazG   6 llaylleEvgEvaeaIkk............edrdeleeELGDvLlqvlflaniaeeeggidledvaetileKlerR 69 
                 +l  l eE gE+ e +              +++++l++ELGDvL+++ +la+     +gid e +++ ++ K++rR
  EGE23693.1 173 VLDKLNEELGELYELLPLgdfnyktdtlsdNQKQKLSDELGDVLFVLTNLARH----LGIDSEMALQGTVGKFRRR 244
                 677899**********996666666666655566******************6....******************9 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1   0.00034       1.2      21      58 ..      26      72 ..       7      96 .. 0.72
   2 !   22.4   0.0   3.3e-08   0.00012      25      73 ..     171     231 ..     150     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00034
                HHHHHHHHHHHHHHHHHHHHHT-SC.....HHHHHHHHHHHH....H CS
      PRA-PH 21 aelaslraaligEEavElleaaseg.....dlaeladelaDl....l 58
                +++++ ++++  EE+ El+ea + +       ++l +el D+    +
  EGE23693.1 26 KQTNASLQKYAIEEVYELIEAIQTDdgsafATEQLKSELGDVllqvV 72
                34455599999**********99776677777888888888855552 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 3.3e-08
                 HHHHHHHHHHHHHHHH............HT-SCHHHHHHHHHHHHHHHHHHHHHHCT--CH CS
      PRA-PH  25 slraaligEEavElle............aasegdlaeladelaDllYvtygllvllGidld 73 
                 + +++++ EE+ El e            + s++++++l del D+l+v+  l+ +lGid +
  EGE23693.1 171 QGVLDKLNEELGELYEllplgdfnyktdTLSDNQKQKLSDELGDVLFVLTNLARHLGIDSE 231
                 34899***********99*******9999999**************************976 PP

>> MazG-like  MazG-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.44   1.6e+03       9      42 ..      42      68 ..      32      76 .. 0.58
   2 !   16.8   0.0   1.7e-06    0.0062      25      60 ..     199     235 ..     164     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.44
   MazG-like  9 ElLkaellksveelfkallkgseeeildeLAdvi 42
                El++a + ++ +++       + e+++ eL dv+
  EGE23693.1 42 ELIEAIQTDDGSAF-------ATEQLKSELGDVL 68
                44444444444333.......3466666666666 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.7e-06
   MazG-like  25 allkgseeeildeLAdviiylylLAdrlGidfee.id 60 
                 +l +++++++ deL dv+ +l  LA+ lGid e  ++
  EGE23693.1 199 TLSDNQKQKLSDELGDVLFVLTNLARHLGIDSEMaLQ 235
                 4556999************************886665 PP

>> PUB_1  PNGase/UBA- or UBX-containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     2e-05     0.073      15      37 ..      42      64 ..      34      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2e-05
       PUB_1 15 ELasALrkDsgqaFslEqLrpLL 37
                EL++A++ D g aF+ EqL+  L
  EGE23693.1 42 ELIEAIQTDDGSAFATEQLKSEL 64
                9******************9765 PP

>> Mis14  Kinetochore protein Mis14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6    0.0002      0.71      47     128 ..       5     135 ..       4     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCT--HHHHH--................................................... CS
       Mis14  47 qelEdltvevAqlRreaPrkiaeayakelkaeleeldeyleainelek.................................................qe 96 
                 + ++dl+   A+lR + P  +++  a   k ++ee+ e+ eai+  +                                                   +
  EGE23693.1   5 DNFDDLLALMARLRTDCPWDAKQTNASLQKYAIEEVYELIEAIQTDDGsafateqlkselgdvllqvvfhthlyqeagrfdmsavilalqdklirrhPH 103
                 579***********************************8888888888999988888888888888888888888888888888888888888888777 PP

                 ------SSSHHHHHHHHHHHHHHHHHHHHHHH CS
       Mis14  97 kkdpeeddededekerleelvkqyeeslkslk 128
                 + ++e+ ++d d+k r++e+++q + +l +l 
  EGE23693.1 104 VFEQENLQTDADVKRRWDEIKAQEKAHLAALG 135
                 77888888888888888888888888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2077.40
//
Query:       EGE23694.1  [L=309]
Description: cysteine synthase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-69  232.1   4.4    1.1e-68  231.9   4.4    1.0  1  PALP           Pyridoxal-phosphate dependent enzyme
     0.0087   16.0   2.0       0.13   12.3   1.1    2.8  2  ADH_zinc_N     Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.09   12.6   0.3       0.85    9.4   0.1    2.1  2  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.9   4.4   1.8e-72   1.1e-68       2     292 ..       8     291 ..       7     293 .. 0.95

  Alignments for each domain:
  == domain 1  score: 231.9 bits;  conditional E-value: 1.8e-72
                 GGCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHH CS
        PALP   2 tlgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvall 97 
                 t+ ig+TPlv+l+rl++ l +++ +KlE+ np  S+KdR a +++ ++++    t+ +t+vea+sGN+g++lA++aa+ G++++i +p+++s e++all
  EGE23694.1   8 TDLIGKTPLVELNRLTEGLSARVVVKLEYANPASSVKDRIALSMIDDAEKSgllTKDTTIVEATSGNTGIGLAMVAAARGYRLVITMPESMSLERRALL 106
                 789********************************************88888*********************************************** PP

                 HHTT-EEEEE..CCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEEC CS
        PALP  98 rllGaevvev..ggdydeavaaaaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepe 193
                 r++Ga++v++   ++   a a+a+elaa+ +g+++  qfdn ++ +   +t++ Ei+++++g++d +v +vG+Gg+++G++  lk+++  +++++vep 
  EGE23694.1 107 RAYGAKLVLTpaAEGMGGAIAKANELAAQ-DGYFMPRQFDNLANPQIhRTTTAEEIWADTDGQVDIFVSGVGTGGTVTGVGETLKAKKEAIQIVAVEPL 204
                 **********876669999999*******.********************************************************************* PP

                 TTCGGTTCCS..S.SS..B.SSS.CCSTCS.CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTCEEEEE CS
        PALP 194 gsdalarslragrrvtvpvsdtiadglavg.spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelkegdrvvv 290
                  s+ l ++          ++++ ++g+++g  ps+l+ +++d+ ++    v +e+a++ +r +a +eg++v+ ss+aa+ a+ +l+ ++e +++  +vv
  EGE23694.1 205 ASPVLSGGE---------KGPHPIQGIGAGfIPSVLNTDIYDEVIK----VANEDAFSVARDMAAKEGLLVGISSGAAVSAAlELAAREENAGK-LIVV 289
                 999999999.........779********************88777....***********************999999999788888888888.8888 PP

                 EE CS
        PALP 291 il 292
                 i+
  EGE23694.1 290 II 291
                 87 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   1.1   2.1e-05      0.13       1      73 [.      76     183 ..      75     205 .. 0.73
   2 ?    0.6   0.0     0.087   5.2e+02      60      90 ..     237     266 ..     228     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHTT-EEEE.EESSHHHHHHHHHTTESEEEET...................................TTCHHHHHHHHHTTTSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaevia.vdsseeklelakklGadeviny...................................keadlverikeltggegvdvvf 63 
                 g+Gla v++A+ +   +++  + s e+++l++ +Ga+ v+++                                   ++++  e+i++ t +++vd+ +
  EGE23694.1  76 GIGLAMVAAARGYRLVITMpESMSLERRALLRAYGAKLVLTPaaegmggaiakanelaaqdgyfmprqfdnlanpqiHRTTTAEEIWADT-DGQVDIFV 173
                 56666666666666655555678889****************887777777777777777777777777666666664445777777777.44888888 PP

                 ESSCSHHHHH CS
  ADH_zinc_N  64 ecvGsgatle 73 
                   vG+g t++
  EGE23694.1 174 SGVGTGGTVT 183
                 8888777766 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.087
                 EEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N  60 dvvfecvGsgatleaalkllkpgGrlvvvGg 90 
                 d v+ +++ +++++ a +++++ G lv +  
  EGE23694.1 237 DEVIKVAN-EDAFSVARDMAAKEGLLVGISS 266
                 55666666.8888888888888888877654 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.051     3e+02      67     101 ..     165     200 ..     120     218 .. 0.68
   2 ?    9.4   0.1   0.00014      0.85      67     109 ..     253     293 ..     232     306 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.051
                    TETTCEEEEEEETHHHHHHHHHH.HHHHHTT---.EE CS
  Abhydrolase_3  67 gadpsrivlaGdSaGGnlaaava.lrardegepk.va 101
                       +  i++ G   GG+ + +   l+a++e  ++ va
     EGE23694.1 165 TDGQVDIFVSGVGTGGTVTGVGEtLKAKKE-AIQiVA 200
                    33345899*******999877653566655.444233 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00014
                    TETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE- CS
  Abhydrolase_3  67 gadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyPv 109
                     + +++  l+G S G+  +aa+ l+ar+e+  + + +v+i P 
     EGE23694.1 253 DMAAKEGLLVGISSGAAVSAALELAAREEN--AGKLIVVIIPS 293
                    344556789*******************96..66778888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2406.02
//
Query:       EGE23695.1  [L=40]
Description: hypothetical protein EA1_08667 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       175  (0.00976072); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 331.05
//
Query:       EGE23696.1  [L=474]
Description: phosphomannomutase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-33  113.9   0.1    8.5e-33  113.0   0.1    1.4  1  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    4.1e-21   75.3   0.0    8.3e-21   74.3   0.0    1.6  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.5e-18   67.3   0.0    3.4e-18   66.2   0.0    1.7  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.8e-08   34.4   0.0    6.1e-08   32.7   0.0    2.0  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.1   1.9e-36   8.5e-33       4     130 ..      14     142 ..      12     149 .. 0.94

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 1.9e-36
                 BBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHC..STS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEEEB-HHHHHHHHHHCCECEEEEE--T CS
   PGM_PMM_I   4 fgtsGlRgkvgegeltpelveklgqaiaeylkae..akkkkvvvGrDtRvssrelaealaaglaanGvevillgllptPavsfairklkadagimitaS 100
                 f+++++Rg+ g  +l+++  +++++a+a++lk++  a+ ++vv+G D R ss  l+ a+++g++ +Gv+vi+lg++ t +v+fa+ +++  +gi +taS
  EGE23696.1  14 FKAYDVRGELG-VTLDEHISYRIARAFAQILKSQntAEHPTVVIGSDIRPSSHSLKLAAIQGITDAGVDVIDLGMTGTEEVYFATSHYNTIGGIEVTAS 111
                 99*********.55********************9999************************************************************* PP

                 TS-TTCCCEEEEETTTCE--CHH.HHHHHHH CS
   PGM_PMM_I 101 HnppeyngiKvylsnGgpispev.eekIeai 130
                 Hnp +yng+K++ +n  pis ++  ++++a 
  EGE23696.1 112 HNPINYNGLKMVRENSRPISADTgLAEVRAL 142
                 *******************998755555555 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   1.9e-24   8.3e-21       3     113 ..     272     380 ..     270     381 .. 0.89

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 1.9e-24
                  HHHHHHHHHHHHCHCSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTTBSS--HHHHHHHHHHHHHHHT CS
  PGM_PMM_III   3 dqllallakylleeklkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiifldeattkDGilaallvleilaetg 100
                   +++ +la ++l++  +++ ++v +      +++v+kk +++   +k G++++++ m+e++a +GgE+S+h++f+d+ +++ G++++ll++e+l+ tg
   EGE23696.1 272 SYVVGMLAAAFLQK-YPKQ-TIVYDPRVIYNTQNVIKKMQGTPALSKSGHSFIKQVMRETKAIYGGEMSAHHYFKDFFYCDSGMIPWLLLIELLSVTG 367
                  55666666666663.5655.5***************************************************************************** PP

                  S-HHHHHHHHHHH CS
  PGM_PMM_III 101 kslselleellkk 113
                  ksl+el+++ +++
   EGE23696.1 368 KSLAELVDDYIQD 380
                  *******887765 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   7.5e-22   3.4e-18       2     103 .]     164     266 ..     163     266 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 7.5e-22
                 HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-...EEEES-----TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE-TTS-BEE CS
  PGM_PMM_II   2 aYiealkekvdseaikksglkvvidplhGaggeilkellkelgv...dvvelnaepdpdfptkapnpeekealkllielvkkegadlglafDgDaDRlg 97 
                 aYi++l + +d+++   +  k+vi+ ++G++g ++++l  +l     ++ +++++pd++fp++ pnp   ++ ++  ++v +++ad+g+afDgD DR++
  EGE23696.1 164 AYIDKLMSFIDTSKFLPK--KIVINSGNGSAGPVIDTLEVRLAGspiELLKIHHQPDGNFPNGIPNPMIIANQAATRDAVIAHKADFGVAFDGDFDRCF 260
                 7**********7677677..8*****************9998887999999****************9999999999********************** PP

                 EEETTE CS
  PGM_PMM_II  98 vvderG 103
                 ++de+G
  EGE23696.1 261 LFDENG 266
                 ****98 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.4e-11   6.1e-08      21      68 ..     414     459 ..     388     465 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.4e-11
                 TTHHCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEES.SHHHHHHHHHH CS
  PGM_PMM_IV  21 kvasikeglkilledGrrlavRpSGTepllrvyvEak.sdeelarlaee 68 
                 k+  + +gl  ++++ +r+++R S+Tepl+r++vEa+ +  +l +  +e
  EGE23696.1 414 KN--TLDGLSLDFGN-WRFNLRSSNTEPLIRLNVEACgDATLLTQKTKE 459
                 34..77888888877.5566*****************555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3506.68
//
Query:       EGE23697.1  [L=285]
Description: SPFH domain Band 7 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-34  118.8   2.8    3.8e-34  118.2   2.8    1.3  1  Band_7           SPFH domain / Band 7 family
    0.00011   22.2   0.1    0.00032   20.7   0.1    1.9  2  Band_7_C         C-terminal region of band_7
    0.00066   19.5   0.2     0.0011   18.7   0.2    1.4  1  Band_7_1         SPFH domain-Band 7 family
  ------ inclusion threshold ------
      0.029   14.5   0.3       0.07   13.3   0.3    1.6  1  XisH             XisH protein
          2    8.6   7.4         39    4.5   4.1    3.1  3  DUF4148          Domain of unknown function (DUF4148)


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   2.8   1.1e-37   3.8e-34       2     177 ..      24     194 ..      23     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1.1e-37
      Band_7   2 iieegevgvvvrfGklsrvlepGlhfilPfgrsvt.vvsvrvqtldvsvsltvptkDglpvtidvtviyrvpddapklvaaveresanldnlirrvles 99 
                 ++++ge  +++r Gk++++lepGl fi+P++++v+ +v +++++ld++  ++v+t+D++++  ++++++++  ++  +v+ +    +n++  ir++++ 
  EGE23697.1  24 MVSQGEKWIIQRLGKYHQTLEPGLNFIIPYVDAVAyKVTTKDIVLDIPS-QEVITRDNVVIIANAVAYINI-VQPEHAVYGI----ENYEHGIRNLVQT 116
                 799*******************************99*************.*********************.**********....************* PP

      Band_7 100 alrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaeaqaeiaraeae 177
                 +lr++i+em+l+  ls+r++++++lk ++ ++ + +G+++  v i+di+p+++ + a+++ +aae++++a + ra ++
  EGE23697.1 117 SLRSIIGEMDLDAALSSRDQIKAQLKHAISDDISDWGITLKTVEIQDIKPSATMQLAMEEQAAAERQRRATVTRADGQ 194
                 ********************************************************************9999988766 PP

>> Band_7_C  C-terminal region of band_7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.2   1.5e+04      14      22 ..      55      63 ..      55      64 .. 0.80
   2 !   20.7   0.1   8.9e-08   0.00032      16      45 ..     241     272 ..     228     284 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.2
    Band_7_C 14 eAvsLrvAe 22
                +Av+++v  
  EGE23697.1 55 DAVAYKVTT 63
                799999976 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 8.9e-08
    Band_7_C  16 vsLrvAeqYveaFgkLAkesnt..vilPanvg 45 
                 v + + eqY++a +++Ak++n   v+lPa++ 
  EGE23697.1 241 VVYLLGEQYIKAMNEMAKSNNAkmVVLPADIL 272
                 667789***************998*****953 PP

>> Band_7_1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   3.1e-07    0.0011     128     209 ..     101     180 ..      79     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.1e-07
    Band_7_1 128 fdteeiseqlkslivtrlsdvlaeskipvldlaakseelaeklkealkeelaeyGlelekleienislpeevekaldkrasm 209
                 +  e+ ++ +++l++t+l ++++e ++ +    +  +++ ++lk+a+++++++ G++l+ +ei++i     ++ a++++a++
  EGE23697.1 101 YGIENYEHGIRNLVQTSLRSIIGEMDLDAA--LSSRDQIKAQLKHAISDDISDWGITLKTVEIQDIKPSATMQLAMEEQAAA 180
                 45667778899***********99998764..3567899*****************************99******999876 PP

>> XisH  XisH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   1.9e-05      0.07       2      53 ..     132     185 ..     131     190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
        XisH   2 pakDifheavkkaLekd..gWtitddplklkleevelyvdLgaekliaaekeee 53 
                 + +D ++ ++k+a+  d  +W it  +++++  + + ++ L++e+  aae++++
  EGE23697.1 132 SSRDQIKAQLKHAISDDisDWGITLKTVEIQDIKPSATMQLAMEEQAAAERQRR 185
                 789************98779*******************************986 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.063   2.3e+02       1      17 [.       1      17 [.       1      30 [. 0.84
   2 ?    1.2   0.0      0.12   4.4e+02      29      42 ..     133     146 ..      81     151 .. 0.84
   3 ?    4.5   4.1     0.011        39      24      50 ..     184     210 ..     167     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.063
     DUF4148  1 Mkstliaaalaaavaaa 17
                M  t+i++al+a+v+++
  EGE23697.1  1 MEFTVIILALVALVVFT 17
                77789999999988775 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.12
     DUF4148  29 TRAqVraELaqaea 42 
                 +R q +a+L+ a +
  EGE23697.1 133 SRDQIKAQLKHAIS 146
                 799******99876 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.011
     DUF4148  24 skspkTRAqVraELaqaeaaGylpsgd 50 
                   +++TRA+ + ++a +ea+G+l +++
  EGE23697.1 184 RRATVTRADGQKQAAILEADGRLEASR 210
                 4589*****************999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2122.82
//
Query:       EGE23698.1  [L=149]
Description: membrane protein implicated in regulation of membrane protease activity [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-12   48.0   2.6    1.2e-12   48.0   2.6    1.8  2  NfeD      NfeD-like C-terminal, partner-binding


Domain annotation for each model (and alignments):
>> NfeD  NfeD-like C-terminal, partner-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.8      0.22   3.9e+03       2      12 ..      33      43 ..      28      49 .. 0.55
   2 !   48.0   2.6   6.9e-17   1.2e-12       1      83 [.      54     147 ..      54     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.22
                XXXXXXXXXXX CS
        NfeD  2 favvsvlllvl 12
                +a+v++lll++
  EGE23698.1 33 AALVTALLLWV 43
                34444444443 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 6.9e-17
                 XXXXXXXXXXXXXXXXS---SSS--S.S---..GGTTSEEEEEE-B...S-EEEEET.....TEEEEEE-.SS..B-TT-EEEEEEE-SSSEEEE CS
        NfeD   1 ifavvsvlllvllrplllkklkkkekktnae..aliGkegvvledi...gtGrvkvd.....GeeWsarsege..iekgerVrVveveGltliVe 83 
                 i++ +s+++ +l+++l++ ++k+++k  + +   +iG++g +++++   g G v++       +eW +r+ ++  ie+g+rV V++v G+ liV 
  EGE23698.1  54 IWLGLSIVACILWFRLIQPRIKTRTK-AGLGgsVIIGEIGMIVSPVvanGLGVVRFSvpkvgAAEWACRTLDGhsIEVGTRVIVTAVMGNELIVI 147
                 7999***************9977665.4433436************97547999966666626*******76679******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1198.05
//
Query:       EGE23699.1  [L=410]
Description: major facilitator superfamily protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-17   61.5  66.5      4e-12   45.7  47.9    2.1  2  MFS_1     Major Facilitator Superfamily
    0.00036   20.0  33.2    0.00053   19.4  33.2    1.2  1  MFS_4     Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7  47.9   4.5e-16     4e-12       3     294 ..      25     314 ..      20     316 .. 0.77
   2 !   19.0  22.0   6.1e-08   0.00055      45     171 ..     275     403 ..     271     409 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 4.5e-16
       MFS_1   3 laaflsalarsi....lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fasslwlllvlrvlq 95 
                 ++++++a+++       g+++p +l++d+g+s  +ig l ++ + ++a++sl +++l+ +fG  r+++ + ll+alg  +++  +  ++  l+v+ ++ 
  EGE23699.1  25 IGLIFAAANMRSplvmMGSIVP-MLSDDFGLSSVQIGYLGAMPMPLFAFGSLMAAVLAKKFGLERMMIGMTLLLALG--VAIrnW-FGVIELYVGTLIL 119
                 4444444444446664666667.9*****************************************************..444245.44555******** PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.kgtgp 193
                 +++ g+l+++ a +i +++p  + ++a+g++s+++s  a +g+     +a  +gW+ ++   ai++++a+++  ++l  ++ +  + +  + +   +  
  EGE23699.1 120 SFAIGMLNALTAPFIKQYAPN-NIALATGVFSLSMSTLAGFGAWMVVPFAKTFGWQFAMSSWAIFGVIAAWI--WWLIYRHNRMDNLKLMPALpTIKP- 214
                 ********************9.********************999999*********************777..666545555555544444221222. PP

       MFS_1 194 aplvpawkallkdpvlw......illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr..lgrrrrlllallll 284
                         +l+k+  lw       + + l l +f f++l ++lp++  + +g +  l  ++ l++++ v+a+la+l+  ++ r  ++ +++ + ++l  
  EGE23699.1 215 ------TAHLKKPINLWrqkaawQMAVLLGLQSFLFYSLASFLPSI-GMAFGVT--LDEAIRLPFVFQVMAPLAILWLTWLSRcgTSFQIISVAGCLMN 304
                 ......33333333443333222344444444679999*******7.*******..8888899999999999988888888894544466777777777 PP

       MFS_1 285 llaalglall 294
                 +l+  gl+++
  EGE23699.1 305 ALGISGLLMI 314
                 7777777766 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 6.1e-08
       MFS_1  45 aavaslplGrlsdrfGrrr..vlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergrai.gllsagfslGailgpl 139
                 +a +++++  +  r+G     + ++g l+ alg+  ll+   ++ l+l+  +l+G+g++++f++++ +++  ++ +e +r + ++++a     a++gpl
  EGE23699.1 275 MAPLAILWLTWLSRCGTSFqiISVAGCLMNALGISGLLM---IPsLMLFWSALMGFGCALVFTLSLMMFSLRTTSTETARDLsSMVQAVGYSIAMFGPL 370
                 677889999999999965555778899999999555556...5559*****************************9999988466666666666***** PP

       MFS_1 140 lggllasslg.Wravfyilaivsllafvlflll 171
                   g l+++ g W+++ ++l +++++ + ++l+ 
  EGE23699.1 371 MIGKLYQWQGdWQLPLMVLVVLMIINIPFGLWA 403
                 ******88778***************8866665 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4  33.2   5.9e-08   0.00053      15     356 ..      44     394 ..      40     398 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.9e-08
       MFS_4  15 iLPallaegqlslsqagllaaaNylGYLvGallaa.falsagaeRlrllagllatvlllla..maltesfaaflliRflaGvasAvvlvfgsslvlaha 110
                 i+P+l  + +ls  q+g+l+a+ +  +  G+l+aa  a++ g eR+++ + ll++  +++    +++e  +  l++ f+ G+  A++  f+ + + +++
  EGE23699.1  44 IVPMLSDDFGLSSVQIGYLGAMPMPLFAFGSLMAAvLAKKFGLERMMIGMTLLLALGVAIRnwFGVIELYVGTLILSFAIGMLNALTAPFIKQYAPNNI 142
                 89**********************99999*99875156777889996544444444333331145667788899*********************6665 PP

       MFS_4 111 a.aarrervgallfaGvGlGiavsgllvllllqlglsassl.Wlalavlsavllllvalllp..raalreasaaaeaak......aeqkslpllallla 199
                 a a++  ++     aG G+      ++v+++ ++g++ +++ W +++v++a +  l+    +  + +l  a    ++++      ++ ++ ++++++++
  EGE23699.1 143 AlATGVFSLSMSTLAGFGAW-----MVVPFAKTFGWQFAMSsWAIFGVIAAWIWWLIYRHNRmdNLKLMPALPTIKPTAhlkkpiNLWRQKAAWQMAVL 236
                 41667777888899999975.....5677888888876655599999988877666555444343333344443333330000004456778999**** PP

       MFS_4 200 YglaGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsgl..rralaaallieavgvllsllspsplglivssvllGltflai 296
                  gl  f +   a Fl+ i  + +g+ l ea   + v   +++ + +wl   +r g+  + + +a +l++a+g+   l+ ps+++   + +++G + + +
  EGE23699.1 237 LGLQSFLFYSLASFLPSIGMA-FGVTLDEAIRLPFVFQVMAPLAILWLTWLSRCGTsfQIISVAGCLMNALGISGLLMIPSLMLFWSALMGFGCALVFT 334
                 ******************988.8888887766665555555666666666666665116678999*****************887777788******** PP

       MFS_4 297 talvlqlarelappatrrllglmTas.fgigQilGpllasllaeatgslalallvaaaalv 356
                  +l +   r  + ++ r l +++ a+ + i  + Gpl+++ l++  g+ +l+l+v  ++++
  EGE23699.1 335 LSLMMFSLRTTSTETARDLSSMVQAVgYSIA-MFGPLMIGKLYQWQGDWQLPLMVLVVLMI 394
                 *************999999999876427775.89*******************98666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2943.80
//
Query:       EGE23700.1  [L=442]
Description: 3-oxoacyl-[acyl-carrier-protein] synthase II [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-55  187.7   1.4    2.8e-55  187.7   0.3    1.5  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    1.1e-36  125.5   0.5    1.9e-36  124.6   0.5    1.4  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.4e-06   28.1   1.0      0.041   13.7   0.1    2.7  2  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    0.00055   19.4   0.2      0.003   16.9   0.1    2.1  2  Thiolase_N       Thiolase, N-terminal domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.7   0.3   6.1e-59   2.8e-55       2     253 .]      21     277 ..      20     277 .. 0.87
   2 ?   -2.6   0.0       0.7   3.2e+03      94     109 ..     312     327 ..     310     353 .. 0.79

  Alignments for each domain:
  == domain 1  score: 187.7 bits;  conditional E-value: 6.1e-59
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaaw 97 
                     +++i+Gmga++P gn+++++w++L +g ++is+l+  + +  +    +a++ag +k+          fd++ +  +p+ea++ d + +++ +aa+
     EGE23700.1  21 ARIVITGMGALTPIGNSLDTIWQNLTQGVSGISRLDGFEDKSVAIDGFRAQIAGLVKN----------FDAK-DYLNPKEARRFDTFVHYAQVAAA 105
                    69*******************************8886444444444557777777776..........6655.445777788************** PP

                    HHHHHHTS-HHTC........TTGGEEEEEEESST..HH..HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHH CS
  ketoacyl-synt  98 ealedagltpeel........dgsrvgvfiGvgag..dy..aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslva 181
                     al +agl ++          dg+r+gv++G+g+g  ++     ++l+++g  +k+sp++++ ++ n+ ag i+++++l+G++++++tAC++s  a
     EGE23700.1 106 MALYHAGLIDDIKgdslpinvDGERFGVVMGSGIGgiQTieTSRDTLKSYG-AKKVSPFIIPGAIINMPAGLIAIRHHLKGANLATTTACTTSTHA 200
                    *******977443566677778888**********7633555567788888.7****************************************999 PP

                    HHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTT.BB-TT.SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 182 vhaavqslrsgeadvalaGGvellltpeavagfsaag.llspd.grckafdpka...dGfvlGEGvGavvLkrleda 253
                    + +  + + +g++d++l+GG+e + tp ++ gf a++ l++++ ++++a++p++   dGfvlG+G+Ga+vL++l++a
     EGE23700.1 201 IGLGARLIAYGDCDAVLVGGSEKASTPLGLSGFGAMHaLSTRNdEPTRASRPFDkdrDGFVLGDGAGALVLESLAHA 277
                    99999********************************88888899999999999999****************9886 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.7
                    HHHHHHHHHHTS-HHT CS
  ketoacyl-synt  94 eaawealedagltpee 109
                    +a++ al+dag+++ e
     EGE23700.1 312 RAMAAALADAGIDACE 327
                    5788999999998754 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.5   4.3e-40   1.9e-36       1     117 [.     285     396 ..     285     397 .. 0.98

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 4.3e-40
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      +a+++g++++ d++h++ ++  ge++ara+++ala+ag+d+ +v+y++ahgt+tp+gD +E +a++++fg++     + v+S+Ks++GHl++Aa
       EGE23700.1 285 LAELVGFGMSDDANHITSPSVGGEGAARAMAAALADAGIDACEVGYINAHGTSTPQGDVAESQAIERLFGQD-----ILVSSTKSMTGHLLGAA 373
                      699********99*********************************************************95.....79*************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G++e+i ++lal+++ +ppt+nl
       EGE23700.1 374 GAIEAIFTILALQNQLLPPTINL 396
                      **********************8 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   9.2e-06     0.041       4      39 ..     191     226 ..     189     231 .. 0.94
   2 !   12.3   0.1   2.6e-05      0.12      47      65 ..     257     278 ..     235     290 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.2e-06
                  E-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG CS
  ACP_syn_III   4 naaCsgfvyalsvAdaliesgaakrvLvigaetlsk 39 
                  ++aC++ ++a+ + ++li+ g +  vLv g+e+ s 
   EGE23700.1 191 TTACTTSTHAIGLGARLIAYGDCDAVLVGGSEKAST 226
                  689******************************996 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.6e-05
                  HHHTTB-EEEEEEEEEEE...S CS
  ACP_syn_III  47 stavlfGDGAgAvvleas...e 65 
                  +  +++GDGAgA+vle     +
   EGE23700.1 257 RDGFVLGDGAGALVLESLahaK 278
                  445799*********9874333 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   6.8e-07     0.003      81     117 ..     190     226 ..     171     243 .. 0.90
   2 ?   -0.8   0.0      0.18   7.9e+02      28      48 ..     311     331 ..     308     352 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.8e-07
                 EEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTT CS
  Thiolase_N  81 vnkvcsSglkavalaaqsiaageadvvvagGvEsmsn 117
                  + +c  + +a+ l+a+ ia g++d+v++gG E+ s+
  EGE23700.1 190 TTTACTTSTHAIGLGARLIAYGDCDAVLVGGSEKAST 226
                 5789*****************************9875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHTS-GGGCCEE CS
  Thiolase_N  28 aealkallekagvdpeevdev 48 
                 a+a+ a+l++ag+d+ ev ++
  EGE23700.1 311 ARAMAAALADAGIDACEVGYI 331
                 78999**********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3418.26
//
Query:       EGE23701.1  [L=307]
Description: tyrosine recombinase XerD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-46  156.7   0.1    7.1e-46  156.1   0.1    1.3  1  Phage_integrase  Phage integrase family
    2.2e-09   37.5   1.3      6e-08   32.9   0.0    3.0  3  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
    1.2e-05   25.7   0.1    3.5e-05   24.2   0.0    1.9  2  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
  ------ inclusion threshold ------
       0.11   11.3   0.3       0.28   10.1   0.2    1.6  2  DUF3435          Protein of unknown function (DUF3435)


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   0.1   1.6e-49   7.1e-46       2     170 ..     122     292 ..     121     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 156.1 bits;  conditional E-value: 1.6e-49
                      HHHHHHHHHHHHCCGC..HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH...CHC CS
  Phage_integrase   2 vltedeverllaalee..slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellska...lee 90 
                      +l e+ev++ll+a +      +rdk++le+ly++GlR+sEl sL++++l+l  g + v    gKg+k r +pl+e al++l e+l+++   l  
       EGE23701.1 122 TLSEQEVSSLLDAPDIssVRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSV---TGKGNKMRLIPLGEYALSALNEYLAVRgslLIG 212
                      799************998999*************************************...***************************998888 PP

                      CTTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase  91 aeksellfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                      +++ +++f+ ++g  ++r ++++ +k+++  agi+++++pHtlRh+fat+L+++g+dlr vq llGHs++sttqiYthva
       EGE23701.1 213 KKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292
                      88899*************************************************************************97 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.3e-11     6e-08       7      82 ..      27      98 ..      22     100 .. 0.91
   2 ?   -3.1   0.0       2.3     1e+04      44      64 ..     110     129 ..     102     147 .. 0.51
   3 ?    2.3   0.2     0.045     2e+02      20      58 ..     264     301 ..     237     306 .. 0.66

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.3e-11
                     HHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS----------HHHHHHHHHHHHHHHHH CS
  Phage_int_SAM_1  7 yLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeglsatslarrlsalrsFfqflvr 82
                       +++rgls +T++aY +d+r  ++  ++     ++  +++dvr+ l  l+++++s++s+ar+l++l +Ff + ++
       EGE23701.1 27 AAMLARGLSIATRNAYSQDVRLCIRLSDT----PVNLWQPSDVRNHLMCLKDAKKSERSIARALASLCQFFLWQIE 98
                     45789********************9999....8999999*******************************99986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.3
                      --HHHHHHHHHS--------- CS
  Phage_int_SAM_1  44 lttedvraflaeleeeglsat 64 
                      ++t  + + l ++++e+   +
       EGE23701.1 110 IKTPKLGKTLPKTLSEQ-EVS 129
                      55555555555555543.222 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.045
                      HHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS--- CS
  Phage_int_SAM_1  20 raYrrdLrrflkflaergkesleqlttedvraflaelee 58 
                       ++  dLr+++  l +    s +q+ t+   + l+ l++
       EGE23701.1 264 VNHGADLRSVQLLLGH-SDLSTTQIYTHVATTRLQNLHA 301
                      3788899999999999.7777777777776666666665 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   7.9e-09   3.5e-05       3      83 ..      23     101 ..      21     103 .. 0.93
   2 ?   -2.5   0.0       1.7   7.5e+03      18      30 ..     229     241 ..     227     266 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 7.9e-09
  Phage_int_SAM_4   3 erfrealrlaglserTiksYlsaikrflrflkkkapeeltkedieaYlnyLanerklsastqknalnalsffykkvlerel 83 
                       +fr a+ ++gls  T+++Y + ++  +r  +  +++  ++ d++  l  L   +k s +++ +al++l +f+ + +e  +
       EGE23701.1  23 SEFRAAMLARGLSIATRNAYSQDVRLCIRLSD-TPVNLWQPSDVRNHLMCLKDAKK-SERSIARALASLCQFFLWQIESGY 101
                      689*****************************.*******************5555.****************99888776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
  Phage_int_SAM_4  18 TiksYlsaikrfl 30 
                      T+++ ++ ik ++
       EGE23701.1 229 TRHNFWHLIKKYA 241
                      6777777776665 PP

>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.36   1.6e+03     271     300 ..     118     147 ..     112     155 .. 0.82
   2 ?   10.1   0.2   6.2e-05      0.28     172     237 ..     227     290 ..     214     306 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.36
     DUF3435 271 rrPkeLtdeqkasveedpelqelkrkreel 300
                   Pk L++++ +s+ + p++ +++  r+++
  EGE23701.1 118 TLPKTLSEQEVSSLLDAPDISSVRGLRDKA 147
                 679999999999999999999888777665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 6.2e-05
     DUF3435 172 altastlnsrlkrlgeiagfeepitpYklRrgaakalneSgevseaqrnlilqHassrtFlkhYls 237
                  +t   +   +k+ +  ag++ +i+p+ lR + a +l +   +   + +l+l+H++ +t  + Y +
  EGE23701.1 227 YMTRHNFWHLIKKYALMAGINTAISPHTLRHAFATHLVN-HGADLRSVQLLLGHSDLSTT-QIYTH 290
                 5899999999**********************9988766.47777788899***998886.45544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2255.62
//
Query:       EGE23702.1  [L=79]
Description: SirA-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-25   86.4   0.0    9.6e-25   86.2   0.0    1.0  1  TusA      Sulfurtransferase TusA


Domain annotation for each model (and alignments):
>> TusA  Sulfurtransferase TusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   5.3e-29   9.6e-25       1      70 []       6      76 ..       6      76 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 5.3e-29
                EEEEBTT-STTCCHHHHHHHHCCCGCT-EEEEEESSCHHHHHHHHHHHHHTEEEEEEE-.GCC-EEEEEEE CS
        TusA  1 ielDlrGlvCPePllklkkalekleegevlevladdpaatediprfakklghelvevee.edgeyrivirk 70
                ++lD++Gl+CPeP++ l+k ++++  ge +e+la+dpa+++dip+f++ lgh+lv +e  +dg yr++++k
  EGE23702.1  6 HTLDTKGLICPEPVMLLHKIIRQALGGEHIEILATDPATMRDIPNFCRYLGHTLVNQETlDDGSYRYLVQK 76
                79*******************************************************9999********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 623.28
//
Query:       EGE23703.1  [L=155]
Description: hypothetical protein EA1_08707 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1158.62
//
Query:       EGE23704.1  [L=158]
Description: putative Holliday junction resolvase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-32  112.3   0.0    2.5e-32  112.1   0.0    1.0  1  RuvX      Holliday junction resolvase


Domain annotation for each model (and alignments):
>> RuvX  Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   1.4e-36   2.5e-32       3     133 ..       7     140 ..       5     142 .. 0.95

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 1.4e-36
                 EEEEEESSSEEEEEEE-S--SS---EEEEE---HHHHHHHHHHHHHHTT--EEEEE------SSS---SSTTHHHHHHHHHT......T-EEEEE--S- CS
        RuvX   3 ilglDvGtkriGvAvsdplgilaspletierkskekdleelkelvkeeeveeiVvGlPlnldgsegesakkvrkfaeeLakrl....kklpvelvDErl 97 
                  l+lD+G k++G+A++++ +  a+p+++++++++++d+++l  +++++ +++++vGlPln+dg+e+  +k+++kfa++La+rl    +++ v+++DErl
  EGE23704.1   7 TLALDYGVKKMGMALGNSITHNARPFDILAMNNGQPDWDNLLGIIEHWGIDRVLVGLPLNMDGTESMLTKRAHKFARRLAHRLgerrQAVSVFIYDERL 105
                 69******************************9**************************************************9999999********* PP

                 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RuvX  98 ttveaerilresglsrkkrkkvvDklaAviiLqsyL 133
                 +++ea+ i+ ++g   + +++ +D++aA+++L+sy 
  EGE23704.1 106 SSKEAKMIALDNGWI-ASSSEPIDDIAACLLLDSYY 140
                 ******999988875.778899***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1237.77
//
Query:       EGE23705.1  [L=185]
Description: hypothetical protein EA1_08717 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-36  124.5   0.0    4.2e-36  124.3   0.0    1.0  1  DUF179    Uncharacterized ACR, COG1678


Domain annotation for each model (and alignments):
>> DUF179  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   2.3e-40   4.2e-36       1     160 []      16     172 ..      16     172 .. 0.92

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 2.3e-40
                 TTSTTTTSTTEEEEEEEEETTEEEEEESSSEEEEEHHHHHHHGCTSSSST-CHHHSEEEES-SEEEEEEEEEEES...SSSEEECSTTEEEE-SSHHHH CS
      DUF179   1 psledpnFersVvlllehdeegalGlvlNrpleltlkelleelleleaepateklssvylGGPveqdrlfvlhsle.elessleisdglylttsldile 98 
                 p+++d++F  +V+++++h+++ga G+++N+ l  +++ ll+e le+  + +t  + + ++GGPv ++++f+lh+ +   +ss +is++++ltts+dile
  EGE23705.1  16 PQMTDERFMDAVIYICRHTKDGAWGFIINQSLPNSVGGLLTE-LEVPVTAST-MQVPAMNGGPVRPEAGFILHTGQpIYKSSFAISENVCLTTSKDILE 112
                 89***************************************9.556555444.4589*****************7768899****************** PP

                 HHCSTTSCSSEEEEEEEEEECTTHHHHHHHTTSEEEEE-.HHHHHCTSTSSHHHHHHHHCCT CS
      DUF179  99 alagkagpeklrvflGyagWeagQLeeEieegaWlvvpassedllfetppeelWeealrrlG 160
                 +l    g +++++++Gy+ W++gQL++E++ g+W+ +pa+ + +lf+tp e++ +++++++G
  EGE23705.1 113 RL-SYDGLRHYLLCMGYCNWGRGQLDAEMAFGDWYACPADLP-TLFSTPFEDRLKACYDKIG 172
                 **.599*********************************888.99999****9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1604.68
//
Query:       EGE23706.1  [L=568]
Description: DNA repair protein RecN [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-24   85.3   0.0    5.1e-24   84.9   0.0    1.1  1  SMC_N          RecF/RecN/SMC N terminal domain
    3.1e-13   50.7   0.0    6.1e-13   49.7   0.0    1.5  1  AAA_23         AAA domain
    4.7e-05   23.3   0.0     0.0066   16.3   0.0    2.7  3  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    5.3e-05   22.9   0.0    0.00015   21.4   0.0    1.7  1  AAA_29         P-loop containing region of AAA domain
    0.00038   20.3   0.0     0.0006   19.6   0.0    1.3  1  AAA_15         AAA ATPase domain
     0.0096   16.2   0.1       0.26   11.6   0.0    3.0  3  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.052   14.1   0.3       0.31   11.6   0.0    2.6  4  ABC_tran       ABC transporter
        4.8    8.0   9.1        5.4    7.9   0.3    4.2  4  PSK_trans_fac  Rv0623-like transcription factor
        6.2    7.2  13.1    1.1e+03   -0.1   9.6    3.7  2  AAA_16         AAA ATPase domain


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.0   2.5e-27   5.1e-24      16     218 ..      14     514 ..       1     516 [. 0.94

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 2.5e-27
                 EEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  16 ktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykin 114
                 +++ ++f+++f++i+G+ G+GKs +ldA++ + Ger+ +++ ++ +++      e + + +a+v   f+++d+k   e+e + i+r+++++g+s+ +in
  EGE23706.1  14 EQKHIDFDDRFNVITGETGAGKSLILDALSLCVGERADSSMVRHGCDEASVF-GEFDISGNAQVIAWFEQHDRK--LEDETLLIRRKISNQGRSKSWIN 109
                 68899*******************************8888777666665444.69999***********99999..9999******************* PP

                 TEEE-HHHHHHHHHC.TT-STT............................................................................. CS
                 xxxxxxxxxxxxxxx.xxxxxx............................................................................. RF
       SMC_N 115 gkevtkkevselles.agiske............................................................................. 135
                 g  ++ +e+++l ++ ++i+++                                                                             
  EGE23706.1 110 GVPASISELKSLGSMlVNIHSQhaglellkpqfivdwldriggfgdlkaaaktafhhyqtlkrqaddarsqsaqradrmallsakltdieplllvdfqe 208
                 *********98765524555559**************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  EGE23706.1 209 ieaeydelsnleslmrealeaavqldndddalsvlsllgramricdnnaqssktfgecsqllvlaqeqiidavakltdyaerelpdaarldelngllsl 307
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  EGE23706.1 308 ahrlsskyhtpiteliadavywqdeldmlsslpdndtmdakvleayqaylvaadaldqariqiapdvcerlearlvplalpnarcqfsfnekpvehyta 406
                 *************************************************************************************************** PP

                 .......................CS-HHHHHHHHHHH.HHH.HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                 .......................xxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 .......................lLSgGektLvalaL.lfA.iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209
                                        + SgGe + +al + ++A    +  +p  ++De+d  +     + v ell++  k+ Q++ i++++++ + a++ +
  EGE23706.1 407 qgkydiallfsanvgmplqplhkVASGGELSRMALTMqVMAaDDGIGAHPTLVFDEVDVGISGGTAQVVGELLRTLGKQQQLLAITHQAQVAAAAHHHI 505
                 ***********************9*****999999874444256799**************************************************** PP

                 EEEEEETTE CS
                 xxxxxxxxx RF
       SMC_N 210 gvtkvengv 218
                  v+k++ ++
  EGE23706.1 506 LVYKEHGEH 514
                 ***977655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   3.1e-16   6.1e-13       1     194 [.       4     225 ..       4     244 .. 0.52

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 3.1e-16
      AAA_23   1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgrytrsiererelskk 99 
                 +L+ en+  ++ ++idF++ +++ItG++GaGK+ ildA+ l+ ++++       + g+ +++v  e++ +++a+v   fe  d++    +e+e  l++ 
  EGE23706.1   4 SLTFENLALIEQKHIDFDDRFNVITGETGAGKSLILDALSLCVGERADSSMV--RHGCDEASVFGEFDISGNAQVIAWFEQHDRK----LEDETLLIRR 96 
                 6999*****************************************8754444..3445555555555556666655557666654....6666665555 PP

      AAA_23 100 kgkttkkaklellei.....deleqfisellgskkiilnlilflgqer..........................feefelkdkke.............. 153
                 k +++  +k   ++      +el+ + s l+++  +   l l+++q                                  k++ +              
  EGE23706.1  97 KISNQGRSKSW-INGvpasiSELKSLGSMLVNIHSQHAGLELLKPQFIvdwldriggfgdlkaaaktafhhyqtL-----KRQADdarsqsaqradrma 189
                 55444333322.222244446666666665555555333333333322223333444444333332222222111.....1111122222232223333 PP

      AAA_23 154 ...............rleelekeleeledekkllekleqekekekeleeleeelee 194
                                  +e+e e++                    el++le+ + e
  EGE23706.1 190 llsakltdieplllvDFQEIEAEYD--------------------ELSNLESLMRE 225
                 3333333344444443333333333....................44444433333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.3e-06    0.0066       1      42 [.      24      68 ..      24     105 .. 0.79
   2 ?   -1.9   0.0       1.2   2.3e+03     142     199 ..     176     233 ..     139     245 .. 0.73
   3 ?    3.9   0.0      0.02        40     254     299 ..     447     495 ..     425     499 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.3e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl...drdvegltdelsggggi 42
                +nv++G  g+GKS +Ldal+l  +     ++v+++ de+s +g++
  EGE23706.1 24 FNVITGETGAGKSLILDALSLCVGEradSSMVRHGCDEASVFGEF 68
                8******************99866566655555555555555444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
      AAA_21 142 kaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklveiel 199
                 +a+  +  ra++ +ll+ +l + + +ll +f++   +++e+  l+ l+r+ +++   l
  EGE23706.1 176 DARSQSAQRADRMALLSAKLTDIEPLLLVDFQEIEAEYDELSNLESLMREALEAAVQL 233
                 4455555566666666666666688888888888888888888888888888776655 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.02
      AAA_21 254 alkkg....sllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                 a++ g    ++l++DE++ g+       + ell+ l +   Q+++ TH+ 
  EGE23706.1 447 AADDGigahPTLVFDEVDVGISGGTAQVVGELLRTLGK-QQQLLAITHQA 495
                 4444566789*************888888888865555.68999999986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.4e-08   0.00015      13      43 ..      14      43 ..       4      50 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 7.4e-08
      AAA_29 13 dghtieidlkg.atlltGpsGsGKSTllDAiq 43
                +++ i++d  + + ++tG++G+GKS +lDA++
  EGE23706.1 14 EQKHIDFD--DrFNVITGETGAGKSLILDALS 43
                56678888..448*****************97 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     3e-07    0.0006       1      48 [.       1      47 [.       1     120 [. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3e-07
      AAA_15  1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFln 48
                M + +++ +N   +++ +id+++ ++v+ G+ ++GKS il+al l   
  EGE23706.1  1 M-LISLTFENLALIEQKHIDFDDRFNVITGETGAGKSLILDALSLCVG 47
                6.778999***********************************88665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00013      0.26       4      27 ..      21      44 ..      17      90 .. 0.83
   2 ?   -1.5   0.1       1.5   2.9e+03      98     117 ..     214     235 ..     159     259 .. 0.60
   3 ?    0.7   0.0       0.3   5.9e+02      91     112 ..     452     482 ..     374     544 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
      AAA_22  4 tagilvvtGesGtGKTtllrrlle 27
                ++++ v+tGe+G+GK++ l  l  
  EGE23706.1 21 DDRFNVITGETGAGKSLILDALSL 44
                567889***********9998866 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
      AAA_22  98 DEaqhlrs...eealeeLrslln 117
                 DE  +l +    eale  ++l n
  EGE23706.1 214 DELSNL-EslmREALEAAVQLDN 235
                 222222.1344555555555555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.3
      AAA_22  91 v..ielliiDEaqh.lrs.......eealeeL 112
                    ++ l+ DE++  + s        e+l++L
  EGE23706.1 452 IgaHPTLVFDEVDVgI-SggtaqvvGELLRTL 482
                 2445666666666655.223332223333322 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.31      15      34 ..      26      45 ..      21     196 .. 0.84
   2 ?   -2.4   0.0       3.1   6.2e+03     108     124 ..     430     446 ..     416     452 .. 0.80
   3 ?   -2.8   0.0       4.1   8.2e+03     107     130 ..     465     489 ..     435     491 .. 0.76
   4 ?   -1.9   0.1       2.2   4.4e+03      53      67 ..     511     525 ..     466     559 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                EEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 15 aivGenGaGKStLlkllagl 34
                +i+Ge+GaGKS +l +l+  
  EGE23706.1 26 VITGETGAGKSLILDALSLC 45
                799************99855 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.1
                 GS-HHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
    ABC_tran 108 sLSgGqkqrvalarall 124
                   SgG+ +r+al + ++
  EGE23706.1 430 VASGGELSRMALTMQVM 446
                 569*******9988776 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.1
                 GGS-HHHHHHH.HHHHHHHHTSSEE CS
                 xxxxxxxxxxx.xxxxxxxxxxxxx RF
    ABC_tran 107 ssLSgGqkqrv.alarallkkpkll 130
                   +SgG  q v +l r+l k+++ll
  EGE23706.1 465 VGISGGTAQVVgELLRTLGKQQQLL 489
                 5679999887746888888888877 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.2
                 -HHHCCHCEEEE-SS CS
                 xxxxxxxxxxxxxxx RF
    ABC_tran  53 eleslrkeigvlpqe 67 
                   e+++++i+v++ e
  EGE23706.1 511 HGEHTKSQIQVITDE 525
                 233333444444443 PP

>> PSK_trans_fac  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.7         3   5.9e+03      40      58 ..     177     194 ..     159     241 .. 0.61
   2 ?    1.9   0.0      0.19   3.8e+02      13      33 ..     307     327 ..     305     365 .. 0.89
   3 ?   -0.4   0.0      0.98     2e+03      50      80 ..     486     512 ..     475     514 .. 0.72
   4 ?    7.9   0.3    0.0027       5.4      12      51 ..     526     564 ..     523     567 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3
                    XXXXXX--HHHHHHHHHHH CS
  PSK_trans_fac  40 lrreraepllerllallrr 58 
                     r+ +++++++r++ l ++
     EGE23706.1 177 ARS-QSAQRADRMALLSAK 194
                    222.444444444444333 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.19
                    XXXXXXXXXXXXXXXXXXXXX CS
  PSK_trans_fac  13 lareLarltgeskteAvrrAl 33 
                    la++L++  ++ +te + +A+
     EGE23706.1 307 LAHRLSSKYHTPITELIADAV 327
                    899*****************9 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.98
                    HHHHHHHHHHHTS--SS-SSTTSTTTXXXXX CS
  PSK_trans_fac  50 erllallrraaakaekedrspdekllyDeeg 80 
                    ++lla+ ++a+  a++     +++l y e+g
     EGE23706.1 486 QQLLAITHQAQV-AAA---AHHHILVYKEHG 512
                    677777777666.333...458999999998 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0027
                    XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX--HHHH CS
  PSK_trans_fac  12 rlareLarltge.skteAvrrAleerlerlrreraepller 51 
                    + ++eLar+ g  ++teA r+ ++  l+ +r  ++++ ++r
     EGE23706.1 526 AQIDELARMSGGvNITEATRAHVKSLLADIR--HTDKMAQR 564
                    5689*****9877****************99..66665554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   9.6      0.53   1.1e+03      28      63 ..      26      62 ..      14     358 .. 0.54
   2 ?   -0.1   0.1      0.54   1.1e+03     116     163 ..     435     483 ..     350     555 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.53
      AAA_16 28 llsGesGvGKsslvrellralekd.ggiflrgkcdql 63
                +++Ge G GKs ++++l   + ++ +   +r  cd+ 
  EGE23706.1 26 VITGETGAGKSLILDALSLCVGERaDSSMVRHGCDEA 62
                5777888888877777764333332233344444444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.54
      AAA_16 116 a.srllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrlle 163
                 + sr++ +++ ++a    +++   lv+D+++  +  +++q+  +Llr+l 
  EGE23706.1 435 ElSRMALTMQVMAADDGIGAH-PTLVFDEVDvGISGGTAQVVGELLRTLG 483
                 256666666666666666566.5566777774344444444555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 4534.91
//
Query:       EGE23707.1  [L=184]
Description: peptide deformylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-54  182.3   0.0    5.7e-54  182.0   0.0    1.1  1  Pep_deformylase  Polypeptide deformylase


Domain annotation for each model (and alignments):
>> Pep_deformylase  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   0.0   3.2e-58   5.7e-54       3     158 ..       5     155 ..       3     156 .. 0.97

  Alignments for each domain:
  == domain 1  score: 182.0 bits;  conditional E-value: 3.2e-58
                      G---TT-GGGCS--B---BSSHHHHHHHHHHHHHHHHHCT-SEEEGGGGT--BSEEEEECCSS-ETT....SEEEEEEEEEEECSCEEECCEE- CS
  Pep_deformylase   3 kivkvgdpvLrekakpvekfeskelekllekmletmkeakgvgLAApQigvnkrlfvielpseeeeeeenkeltvliNPkitskseetitdeEg 96 
                      +i++++dp+Lr+ akpv+ f+++ l++l+e+m+etm++a+g+gLAA+Q++ + +l+v++l +++e ++++    v+iNPk+t+  +e  + +Eg
       EGE23707.1   5 PILTYPDPRLRTLAKPVTVFDDR-LKQLIEDMFETMYDARGIGLAATQVDRHIQLIVMDLARKDEPPSPQ----VFINPKVTPLVDEHSSYQEG 93 
                      79******************988.*****************************************98876....******************** PP

                      -TTSTT--CEEEEESCEEEEEE-TTS-EEEEEEEHHHHHHHHHHHHHCTT--GGGGC-TTXX CS
  Pep_deformylase  97 ClSvpgieakVeRskrikvkyldltgkeveleaegllArvlqHEiDhlnGklfidridksek 158
                      ClSvp+++ ++eR++r+++++ld++g+++e+eaegllA+++qHE+DhlnGklf+d ++ +++
       EGE23707.1  94 CLSVPEVFDTIERPSRVRIEALDKDGQPFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQ 155
                      ********************************************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1404.91
//
Query:       EGE23708.1  [L=196]
Description: imidazoleglycerol-phosphate dehydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-64  217.0   0.3    2.6e-64  215.9   0.3    1.5  2  IGPD      Imidazoleglycerol-phosphate dehydratase
  ------ inclusion threshold ------
       0.02   15.1   0.1        3.2    8.0   0.0    2.2  2  SpmSyn_N  S-adenosylmethionine decarboxylase N -terminal


Domain annotation for each model (and alignments):
>> IGPD  Imidazoleglycerol-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.31   2.8e+03      59      85 ..       2      28 ..       1      31 [. 0.78
   2 !  215.9   0.3     3e-68   2.6e-64       1     144 []      32     175 ..      32     175 .. 1.00

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.31
                --EEEEEEEETTEEEEEEEE--SS-EE CS
        IGPD 59 kRfgsallpmDealaevaldlsgrpyl 85
                +Rf s++    e++++v ++l g    
  EGE23708.1  2 TRFSSVTRNTAETQISVNINLDGSGQG 28
                688889889999999999999887655 PP

  == domain 2  score: 215.9 bits;  conditional E-value: 3e-68
                 ....HHHHHHHHHHHHHT--EEEEEEESSH...HHHHHHHHHHHHHHHHHHS..-SSB--EEEEEEEETTEEEEEEEE--SS-EEE--..-SB--TT.- CS
        IGPD   1 TgigfldhmLdqlakhggfdlkvkvkgdlevddHhtvedvgialGqalkealgdkrgikRfgsallpmDealaevaldlsgrpylvleaelkrekigel 99 
                 Tg++fldhmLdq+++hg +dl+vk+ gd+++ddHh+vedvgia+Gqalk+algdk+gi+R+g++++p+De+l++v++d+sgrp l++++ ++r++ig++
  EGE23708.1  32 TGVPFLDHMLDQIKRHGLIDLDVKCVGDTHIDDHHSVEDVGIAIGQALKQALGDKKGIRRYGHFYAPLDESLSRVVVDISGRPGLHMNVPFTRSHIGSM 130
                 9************************************************************************************************** PP

                 -HHHHHHHHHHHHHHHT-EEEEEEEE--BHHHHHHHHHHHHHHHH CS
        IGPD 100 dtelveeffeslaeaagitlhvkvlrgenahhivealfKafaraL 144
                 d++l+ eff +l+++a itlh+++l+g+n+hh++e++fKa+araL
  EGE23708.1 131 DVDLFSEFFYGLVNHAFITLHIDTLKGKNSHHQIESVFKALARAL 175
                 ********************************************8 PP

>> SpmSyn_N  S-adenosylmethionine decarboxylase N -terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00036       3.2      42      79 ..      43      82 ..      25      94 .. 0.77
   2 ?    5.0   0.0     0.003        27      45      91 ..     144     190 ..     138     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00036
    SpmSyn_N 42 riyphGlvlldlqsyeedekaq..evdkllnkveerlkel 79
                +i  hGl+ ld++++ + +     +v+++  ++ + lk+ 
  EGE23708.1 43 QIKRHGLIDLDVKCVGDTHIDDhhSVEDVGIAIGQALKQA 82
                5889***********9876443237777777777777665 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.003
    SpmSyn_N  45 phGlvlldlqsyeedekaqevdkllnkveerlkellegsikrvkrlP 91 
                  h +++l + +++++++ ++++++++++ + l+  +e + +   +lP
  EGE23708.1 144 NHAFITLHIDTLKGKNSHHQIESVFKALARALRMAVEYDERAKDQLP 190
                 7999*************************999988887777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1570.47
//
Query:       EGE23709.1  [L=208]
Description: imidazole glycerol phosphate synthase subunit HisH [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-16   60.1   0.0    2.8e-16   59.8   0.0    1.0  1  GATase         Glutamine amidotransferase class-I
    3.8e-06   26.7   0.0    4.8e-06   26.3   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
    0.00025   21.0   0.1     0.0021   17.9   0.0    1.9  2  SNO            SNO glutamine amidotransferase family
  ------ inclusion threshold ------
      0.085   12.6   0.4       0.18   11.5   0.1    1.8  2  Peptidase_C26  Peptidase C26
       0.17   11.8   0.4          5    7.0   0.1    2.2  2  UPF0146        Uncharacterised protein family (UPF0146)


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   7.8e-20   2.8e-16       2     186 ..       6     203 ..       5     206 .. 0.75

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 7.8e-20
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT.... CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg......vegkieaikearenkiPiLGICLGmQllaiefgr.... 90 
                 l+D++ ++ +++++al  +g++v        +  i    k++d+il++ G+g+        +++ i+++ + + n +P++ IC GmQ++++ + +    
  EGE23709.1   6 LLDYGVGNLYSVANALKVAGADVITTD--RAD-DI----KKADKILLP-GVGAMRdamahmAKHGIDIAVKEALNTKPVMAICVGMQAMFDVSEEgdvp 96 
                 7999999**********9998776655..333.33....368999886.56665558888866667655444445******************998888 PP

                 .......EEE...........EEECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBT CS
      GATase  91 .......kvv...........kekekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHP 171
                        + v           +  + +h g++   +d+++ l++g  n  + ++ H+y ++p    p++  ++a+++ +++++  i  +n ++ +QFHP
  EGE23709.1  97 clgiisgT-VrrfddawiqndEPIKIPHVGWNRVDTDTDHMLWQGC-NHEYFYFTHSYYCDP---TPNNQLILAHTTYGQKFCSSIIWDN-LFITQFHP 189
                 88777762.1466677777775555999999977777666777777.999************...6666566666668889999999999.667***** PP

                 TSTTSTTHHHHHHHH CS
      GATase 172 Eststpegpellfnf 186
                 E+++  +  +ll nf
  EGE23709.1 190 EKSHHAG-LKLLSNF 203
                 *999876.7777776 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.3e-09   4.8e-06       3      88 ..       5      86 ..       3     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.3e-09
    GATase_3  3 avirlpaisnytdldpLeaepevrvrfvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmL 88
                a++ +   + y+  ++L+ ++  +v+  + + +++++ ad ++lpG    ++++a+++++g+d a+kea+ + +pv++iC G+q +
  EGE23709.1  5 ALLDYGVGNLYSVANALKVAG-ADVITTD-RADDIKK-ADKILLPGVGAMRDAMAHMAKHGIDIAVKEAL-NTKPVMAICVGMQAM 86
                555555666777778888866.5666666.6889965.******************************98.59***********76 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     6e-07    0.0021       8     102 ..      14     107 ..      11     113 .. 0.80
   2 ?    0.9   0.0     0.099   3.5e+02     160     182 ..     180     203 ..     157     206 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6e-07
                 HHHHHHHHHHTTSEEEEE-SGGGGCC-SEEEE-SS-H..HHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTBSS-SS--CCEEEET CS
         SNO   8 veehveaikkclaenktvkrkedlaevdaliiPGGes..tamskliertglyedllefvknsekvvlGtCaGlillskelenelvktlellkvkvkr 102
                 +    +a+k ++a+  t  r +d+++ d +++PG  +   am+++++  g ++   + + n+ k+v+  C G+  +    e+ +v+ l+++  +v+r
  EGE23709.1  14 LYSVANALKVAGADVITTDRADDIKKADKILLPGVGAmrDAMAHMAK-HG-IDIAVKEALNT-KPVMAICVGMQAMFDVSEEGDVPCLGIISGTVRR 107
                 55667899*************************95431156766654.56.35555555566.9**********999888888*********99999 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.099
                 TTEEEESS-GGGSTT.HCHHHHHH CS
         SNO 160 kkilatsfhPelaed.dirvhdyf 182
                 ++++ t fhPe + + + ++   f
  EGE23709.1 180 DNLFITQFHPEKSHHaGLKLLSNF 203
                 688999*****9864245665555 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.1e-05      0.18     100     118 ..      68      86 ..      30      95 .. 0.80
   2 ?   -2.7   0.0       1.1     4e+03     211     216 .]     185     190 ..     180     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.1e-05
  Peptidase_C26 100 aalergvPilgiCrGlqll 118
                    ++  + +P+++iC G+q +
     EGE23709.1  68 KEALNTKPVMAICVGMQAM 86 
                    3444679**********88 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
  Peptidase_C26 211 vQwHPE 216
                     Q+HPE
     EGE23709.1 185 TQFHPE 190
                    6****9 PP

>> UPF0146  Uncharacterised protein family (UPF0146)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0014         5      19      46 ..       8      35 ..       2      45 .. 0.83
   2 ?    3.4   0.1     0.018        65      15      42 ..      41      68 ..      34      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0014
                EET-TT--HHHHHHHHHS-EEEEE-SS- CS
     UPF0146 19 EvGiGrkldvaealakrgvdlvatDike 46
                + G+G    va+al+  g d++ tD  +
  EGE23709.1  8 DYGVGNLYSVANALKVAGADVITTDRAD 35
                679*********************9654 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.018
                SEEEEET-TT--HHHHHHHHHS-EEEEE CS
     UPF0146 15 gkvvEvGiGrkldvaealakrgvdlvat 42
                 k+   G+G+  d  +++ak+g+d+ + 
  EGE23709.1 41 DKILLPGVGAMRDAMAHMAKHGIDIAVK 68
                577778****************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1558.46
//
Query:       EGE23710.1  [L=629]
Description: DNA topoisomerase IV subunit B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-41  141.5   0.0    3.3e-41  140.7   0.0    1.3  1  DNA_gyraseB    DNA gyrase B
    3.3e-25   88.0   0.7    6.2e-25   87.2   0.7    1.5  1  DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
    5.8e-20   71.9   0.1    1.1e-19   71.0   0.1    1.4  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    1.4e-11   44.5   0.0    3.8e-11   43.1   0.0    1.8  1  Toprim         Toprim domain
    0.00043   20.1   0.0     0.0014   18.5   0.0    1.8  2  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li
     0.0012   19.1   0.0     0.0026   18.0   0.0    1.4  1  TOPRIM_C       C-terminal associated domain of TOPRIM
      0.004   17.0   0.4      0.011   15.6   0.4    1.8  1  DUF4880        Domain of unknown function (DUF4880)
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.21   10.9   0.0    1.4  1  TRAP_beta      Translocon-associated protein beta (TRAPB)


Domain annotation for each model (and alignments):
>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   0.0   1.5e-44   3.3e-41       1     170 [.     218     387 ..     218     391 .. 0.96

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 1.5e-44
  DNA_gyraseB   1 Glkdfveelnkdkkelikevlsvegekaveevievevalqwtssyse.nilsFvNniatpeGGtHvdgfksaltktlneyakkkkllkkkeekisged 97 
                  G+ ++++e   ++++l ke+++v++e +  e+  + +al w  +  +  ++s+vN i+t++GGtHv+g++++++++l+e+++ ++ll+++  k+sged
   EGE23710.1 218 GVVQYLTEQLDGSDTLPKEPFYVSQEPTLGERGGATFALSWLAEGGTpITESYVNLIPTAQGGTHVNGLRTGVLEALREFCDIHNLLPRQI-KLSGED 314
                  8899**9999999**************99888**********88888799***************************************98.****** PP

  DNA_gyraseB  98 iregltavvsvkipepqFeGQTKekLgnsevksivekvvseeleafleenkeeakkilekaveaakareaark 170
                  + +g+ +++s+k+ epqF GQTKe+L+++e++++v+++ +++++ +l+++++ ak+i+e a+++a +r+a  +
   EGE23710.1 315 VWDGVNYILSLKFVEPQFSGQTKERLSSREAAPLVQTLAKDAFSLWLNQHPDHAKAIAELAISKATKRLATAQ 387
                  ********************************************************************98765 PP

>> DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.7   2.8e-28   6.2e-25       1      63 []     556     619 ..     556     619 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 2.8e-28
  DNA_gyraseB_C   1 kkkveiqRfKGLGEmnpeqLweTTmdpetRrLlqvtiedaeeadelfstLmGkk.vepRrefie 63 
                    +kk++i+RfKGLGEmnp+qL+eTTm+p+tR+L++++++d++++++++++L++kk  ++R++++e
     EGE23710.1 556 NKKTQITRFKGLGEMNPSQLKETTMNPDTRKLIRLDLDDTASTNSIMDMLLAKKrSADRKQWLE 619
                    5899**************************************************9*******97 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.1   4.9e-23   1.1e-19       2     109 ..      27     169 ..      26     171 .. 0.91

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 4.9e-23
                 HHHHHHHHHHHHHHHHHHH..HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT..............GTCSTTCHHCSTCHTSTSSSHHHHHHHHH CS
   HATPase_c   2 dekrLrqiisnlvdNavkf..atkageieveikaseddlvisveDnGiGipkedlk..............klfekfsqddstkrggggtGlGlsivkkl 84 
                 d  r  ++ ++++dN+v++  a+ a +i v ++  + d ++sveD+G+G+p ++++              + ++kfs+ ++++++gg +G+G s+v++l
  EGE23710.1  27 DTMRPNHLAQEVIDNSVDEalAGFARHIIVILH--K-DGSLSVEDDGRGMPTDIHPefnqsgveliltrlHAGGKFST-ENYQVSGGLHGVGISVVNAL 121
                 778899*************6666999*******..7.9******************************555555****.*******************9 PP

                 HHHTTTEEEE.......................EEETTTEEEEEEEEE CS
   HATPase_c  85 velmgGeiwv.......................esepgrGttftftlp 109
                 +++++ ++w+                        ++++rGt+++f+++
  EGE23710.1 122 STRVEVTVWRdglmhtmafehgepvtaliadksANKKKRGTKVQFWVD 169
                 9999999999*********99999999998866555599******997 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.7e-14   3.8e-11       1      88 [.     416     510 ..     416     527 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.7e-14
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS...TTEEEEE....ECTTTHHHHHH...HHHHH.HHHSEEEEECSSSHHHHHHHHHHHHHHT CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildlet...efkpvye....eiedkkkvlka...lkela.kradeiilatDpDreGeaiawellevlk 88 
                 el++vEg s+ +++++a+++ fqa+++++G+il+  +   +    +     ei+d+  ++++    + l+ +r+d+i ++ D+D +G +ia+++  ++ 
  EGE23710.1 416 ELFLVEGQSAGGSAKQARDNAFQAILPLRGKILNAWEvssD----TVlssqEIHDIAIAIGVdpaSDDLSeLRYDKICILADADSDGLHIATLICALFV 510
                 69**********************************94222....225577999999999999984444469********************9986554 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.1e-07    0.0014       9      53 ..      37      85 ..      30     146 .. 0.65
   2 ?   -3.6   0.0         4     9e+03      66      86 ..     242     261 ..     235     268 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.1e-07
  HATPase_c_3  9 elvdNsld....AdaenvkievnknrgktgeivieDdGkGmsee...elkn.a 53
                 e++dNs+d    + a+++ + ++k+    g++++eDdG Gm+ +   e+ + +
   EGE23710.1 37 EVIDNSVDealaGFARHIIVILHKD----GSLSVEDDGRGMPTDihpEFNQsG 85
                 99******98866688899999996....69**********987666665543 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4
  HATPase_c_3  66 kstslGkkGiGlklAslslgk 86 
                  ++++lG++G G  +A  +l++
   EGE23710.1 242 QEPTLGERG-GATFALSWLAE 261
                  678999999.76999988876 PP

>> TOPRIM_C  C-terminal associated domain of TOPRIM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.2e-06    0.0026      34      96 ..     556     620 ..     528     625 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.2e-06
    TOPRIM_C  34 lkkwkikYYkGLgtstskeakeyfsnld.khlkefkleeeedk.eaielaFskkkaderkewlkk 96 
                 +kk +i  +kGLg ++ ++ ke   n d ++l++++l+++ ++ + +++   kk++ +rk+wl++
  EGE23710.1 556 NKKTQITRFKGLGEMNPSQLKETTMNPDtRKLIRLDLDDTASTnSIMDMLLAKKRSADRKQWLET 620
                 45678899**************9888872567899998886553889****************85 PP

>> DUF4880  Domain of unknown function (DUF4880)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4     5e-06     0.011      20      40 ..     354     374 ..     339     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5e-06
     DUF4880  20 raafqaWlaadPrHarAwqra 40 
                   af  Wl+++P+Ha+A +++
  EGE23710.1 354 KDAFSLWLNQHPDHAKAIAEL 374
                 689**************8876 PP

>> TRAP_beta  Translocon-associated protein beta (TRAPB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.6e-05      0.21      58     111 ..     169     224 ..     159     243 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.6e-05
   TRAP_beta  58 D.dsfpeeaFevvsgslsakw.erlapgenvshsfvvepkksgsfngtaavvtYre 111
                 D + f++ +F++ + + ++k  ++la+g  + ++ ++ep  s s ++t+ vv+Y  
  EGE23710.1 169 DgQYFDTPKFSIKTLKHNLKAkAVLAAGLHIDFISEIEPNDSESWQFTDGVVQYLT 224
                 545589999999887555554168******************************43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4840.23
//
Query:       EGE23711.1  [L=43]
Description: hypothetical protein EA1_08747 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       129  (0.00719505); expected 358.6 (0.02)
Passed bias filter:                      105  (0.00585643); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 392.21
//
Query:       EGE23712.1  [L=202]
Description: hypothetical protein EA1_08752 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-29  102.1   0.0    4.6e-29  101.7   0.0    1.1  1  UPF0227        Uncharacterised protein family (UPF0227)
    0.00021   22.0   0.0    0.00026   21.7   0.0    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0067   15.6   0.0     0.0069   15.6   0.0    1.1  1  DUF2920        Protein of unknown function (DUF2920)
  ------ inclusion threshold ------
       0.14   12.3   0.1       0.46   10.6   0.0    1.9  2  Complex1_LYR   Complex 1 protein (LYR family)


Domain annotation for each model (and alignments):
>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0     1e-32   4.6e-29       1     183 [.       2     193 ..       2     196 .. 0.82

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 1e-32
     UPF0227   1 kllYlHGFdSSPlshkaqllsqfiaedvlaielsvlklkedpqqalkeleklvaelgddnillvGssLGGyyatrlgerfglrqvllnPalkplenlag 99 
                 kl+YlHG dS  +  kaq  + ++++  ++ie++ + l+  p +++k l++l+ +  d+n +l+GssLGGy+a+ l+ + g+ +vllnP + p+ ++  
  EGE23712.1   2 KLIYLHGLDSDSNAIKAQITQTYCQANYPNIEVIRPDLNRTPDEVVKLLKSLIID--DRNTVLIGSSLGGYFANLLSDLTGVPAVLLNPSIWPDISFRR 98 
                 69********99*****************************************76..5588************************************** PP

     UPF0227 100 klgeeavqs..tqetyvleeyhiielkalelsr............lkrperilvllskqDevldyrravaefra..aaeiveddgdHafkdvsehlqqi 182
                 +l+++  +   ++et+ ++          ++++            +k+p+ i vll+ +De ld + ++a + +  ++ + +++gdH ++d + ++  +
  EGE23712.1  99 FLDQNFDERalSDETVIYTTA-----GGWQITYgdlawferhrlaVKNPDLIKVLLKMGDELLDAQVTQAFYDQkgVQVLAQAGGDHRISDYEVQVATV 192
                 ***964433114455555432.....22333334444444555889**************************7621444556788*****998887776 PP

     UPF0227 183 i 183
                 +
  EGE23712.1 193 M 193
                 5 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   5.8e-08   0.00026      51     146 ..      44     133 ..       8     197 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 5.8e-08
                    HHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..EEEEES-..----TTTS----TTHHHHHHTT-C.......CCCHCCHS-HSCCCCHHH CS
  Abhydrolase_6  51 adlaalldelaagggpvvlvGHSlGGalalaaaplalvvgvlldppptalpagllaaalelllallallrl.......lawlsreplprlfladed 139
                    ++++ ll +l+ ++++ vl+G SlGG+ a ++ +l+ v +vll+p   ++p+  ++++l +    +al           +w        ++ +   
     EGE23712.1  44 DEVVKLLKSLIIDDRNTVLIGSSLGGYFANLLSDLTGVPAVLLNP--SIWPDISFRRFLDQNFDERALSDEtviyttaGGWQI------TYGD--- 128
                    55567777777688888**************666666666*****..766666644444444433332222122223323332......2222... PP

                    CCCCHCH CS
  Abhydrolase_6 140 adaawra 146
                       aw +
     EGE23712.1 129 --LAWFE 133
                    ..22222 PP

>> DUF2920  Protein of unknown function (DUF2920)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.5e-06    0.0069     177     228 ..      55     105 ..       7     155 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-06
     DUF2920 177 eadlpviliGgsyGGYlalLiaKiaPwyvdgvlDn.ssvakpllayilGreie 228
                   d + +liG+s GGY+a+L++ +    v +vl n s +    ++  l ++++
  EGE23712.1  55 IDDRNTVLIGSSLGGYFANLLSDLTG--VPAVLLNpSIWPDISFRRFLDQNFD 105
                 3479****************998864..4555444255666666666666665 PP

>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.88   3.9e+03      17      28 ..      91     102 ..      91     109 .. 0.62
   2 ?   10.6   0.0    0.0001      0.46      34      58 ..     132     157 ..     130     158 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.88
  Complex1_LYR  17 fpdyntreyfrr 28 
                   +pd+++r+++ +
    EGE23712.1  91 WPDISFRRFLDQ 102
                   567776666543 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0001
  Complex1_LYR  34 Frknkh.vtDpekieellkkgreeLe 58 
                   F++++  v++p+ i+ llk g e+L+
    EGE23712.1 132 FERHRLaVKNPDLIKVLLKMGDELLD 157
                   9****99****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1768.25
//
Query:       EGE23713.1  [L=217]
Description: hypothetical protein EA1_08757 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0021   18.0   1.7     0.0021   18.0   1.7    3.0  3  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
     0.0042   17.2   0.9     0.0071   16.5   0.9    1.4  1  Pox_A14         Poxvirus virion envelope protein A14
     0.0094   15.8   0.1       0.02   14.8   0.1    1.6  1  DUF4006         Family of unknown function (DUF4006)
  ------ inclusion threshold ------
      0.011   15.7  10.0       0.04   14.0   2.2    2.6  2  DZR             Double zinc ribbon
      0.025   14.7   0.3      0.025   14.7   0.3    1.8  2  DUF2318         Predicted membrane protein (DUF2318)
      0.034   13.8   3.9      0.034   13.8   3.9    2.3  2  zf-RRN7         Zinc-finger of RNA-polymerase I-specific TFII
      0.044   13.4   0.6      0.044   13.4   0.6    1.6  2  DpnI            Dam-replacing family
      0.083   12.9   7.8       0.16   12.0   1.4    2.3  2  zinc-ribbons_6  zinc-ribbons
       0.14   12.4   9.2        2.4    8.4   1.1    2.5  2  IBR             IBR domain, a half RING-finger domain
       0.14   11.9   2.3        2.6    7.8   0.2    2.3  2  Rep_fac-A_C     Replication factor-A C terminal domain
       0.34   10.4   7.3      0.068   12.7   1.7    2.4  2  TF_Zn_Ribbon    TFIIB zinc-binding
       0.59   10.3   0.1       0.59   10.3   0.1    3.6  4  Zn-ribbon_8     Zinc ribbon domain
        4.6    7.2  10.6        6.5    6.8   6.6    2.9  3  Zn_ribbon_SprT  SprT-like zinc ribbon domain
        6.7    6.6   9.3        9.8    6.1   0.3    3.7  4  zinc_ribbon_2   zinc-ribbon domain


Domain annotation for each model (and alignments):
>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   3.5      0.15   1.9e+02       5      26 ..      18      40 ..       9      41 .. 0.71
   2 ?    5.6   0.4     0.012        16       5      27 ..      18      41 ..      16      48 .. 0.86
   3 !   18.0   1.7   1.6e-06    0.0021      17      45 ..     166     193 ..     154     194 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.15
  Zn_Tnp_IS1595  5 earalLealrWpngfv.CPhCgs 26
                   ++ +++++ ++++g + C hC++
     EGE23713.1 18 DCGKMFCDTIYKHGIIfCLHCQK 40
                   57777777788888555888875 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.012
  Zn_Tnp_IS1595  5 earalLealrWpngfv.CPhCgsr 27
                   ++ +++++ ++++g + C hC+++
     EGE23713.1 18 DCGKMFCDTIYKHGIIfCLHCQKS 41
                   68999*********777****976 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 1.6e-06
  Zn_Tnp_IS1595  17 ngfvCPhCgsrkayriktrglfqCkeCrk 45 
                    + + CPhC+s++++ +++   + C++C++
     EGE23713.1 166 HAPYCPHCQSQRFHNTAD-DDYVCQKCHT 193
                    5689*************9.********96 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.9   5.5e-06    0.0071       8      63 ..      65     120 ..      59     153 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.5e-06
     Pox_A14   8 knyys.tvliaGiiLLilacifafvdfskststtdkawralsivsFilgivillgll 63 
                 ++yy  +v+ +G+ +Li + ifaf  + k + tt   w a+ i+   l  v+++++ 
  EGE23713.1  65 TRYYKiYVVCTGMPILIYTAIFAFDGLDKFNLTTG-FWVAVIILMIFLFFVAIVAIE 120
                 45554378999*******************99775.999988776555555555543 PP

>> DUF4006  Family of unknown function (DUF4006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.6e-05      0.02      14      58 ..      97     140 ..      83     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
     DUF4006  14 itGmliavvLLLsilavLtvlaikvqqaeatnyYkledldsvkmi 58 
                  tG+ +av++L+  l++  + ai+ +     + Yk+++   +k  
  EGE23713.1  97 TTGFWVAVIILMIFLFFVAIVAIENNL-RYYHAYKIKNRPLIKGV 140
                 49*********************9755.56788999998888865 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.1     0.019        25       4      22 ..      24      42 ..      14      51 .. 0.82
   2 ?   14.0   2.2   3.1e-05      0.04       9      41 ..     164     198 ..     160     202 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.019
         DZR  4 CgeelppdarfCseCgtkl 22
                C +  +++ +fC +C+++l
  EGE23713.1 24 CDTIYKHGIIFCLHCQKSL 42
                7777888888999998886 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.1e-05
         DZR   9 ppdarfCseCgtklkavaa..edrCpsCgekvdpe 41 
                 +++a +C++C+++    +a   ++C +C++k +++
  EGE23713.1 164 DAHAPYCPHCQSQRFHNTAddDYVCQKCHTKSSLN 198
                 56778899998884433334688999998887765 PP

>> DUF2318  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       3.6   4.7e+03      51      61 ..      32      42 ..      21      47 .. 0.70
   2 ?   14.7   0.3     2e-05     0.025      28      63 ..     157     197 ..     141     204 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.6
     DUF2318 51 elvCknCgvrf 61
                 + C +C++++
  EGE23713.1 32 IIFCLHCQKSL 42
                46777777655 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2e-05
     DUF2318  28 gklrvalda....CevCekkgYv.qegeelvCknCgvrfal 63 
                 +kl++ +da    C  C++++++   +++ vC++C ++ +l
  EGE23713.1 157 DKLATSFDAhapyCPHCQSQRFHnTADDDYVCQKCHTKSSL 197
                 4455555544444*********98899********998765 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.7     6e+03      20      25 ..      20      25 ..      20      25 .. 0.88
   2 ?   13.8   3.9   2.6e-05     0.034       7      31 ..     170     195 ..     164     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.7
     zf-RRN7 20 GfyyCr 25
                G+++C+
  EGE23713.1 20 GKMFCD 25
                899**7 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.6e-05
     zf-RRN7   7 CgvCgcrsftl.ddGfyyCrrChtqe 31 
                 C+ C + +f+  +d  y+C+ Cht++
  EGE23713.1 170 CPHCQSQRFHNtADDDYVCQKCHTKS 195
                 ************************86 PP

>> DpnI  Dam-replacing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.9   4.9e+03      32      42 ..      33      43 ..      30      48 .. 0.74
   2 ?   13.4   0.6   3.4e-05     0.044      29      74 ..     165     207 ..     147     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.9
                ---TTT--SS- CS
        DpnI 32 lyCpkCgskkl 42
                ++C +C+++ l
  EGE23713.1 33 IFCLHCQKSLL 43
                57888877755 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.4e-05
                 HHH---TTT--SS-EE--------EEE-TTT--EEEEEEEES.S--S CS
        DpnI  29 aknlyCpkCgskklsefennkpvaDfyCesckeefeLkskks.klsk 74 
                 a+  yCp+C+s+   +f+ n+   D+ C++c+ +  L  k + ++++
  EGE23713.1 165 AHAPYCPHCQSQ---RFH-NTADDDYVCQKCHTKSSLNPKLKkRIPS 207
                 5677*******9...454.56778********998887664435555 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.6     0.032        42      14      37 ..      30      53 ..      13      57 .. 0.74
   2 ?   12.0   1.4   0.00012      0.16      31      57 ..     169     193 ..     161     203 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.032
                    SSEEE-TTT--EEEEEEE-SSS-S CS
  zinc-ribbons_6 14 geqyhCeaCqedlkkealCpeCeq 37
                    +  ++C +Cq++l ++++ p+ +q
      EGE23713.1 30 HGIIFCLHCQKSLLVNPFTPDLQQ 53
                    356899999999999998887665 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00012
                     E-SSS-S---EEEETTEEEE--TTTT- CS
  zinc-ribbons_6  31 lCpeCeqelevlkaCgavdyfCnkcne 57 
                     +Cp+C++  ++++  +  dy C+kc+ 
      EGE23713.1 169 YCPHCQS--QRFHNTADDDYVCQKCHT 193
                     5555554..344444455555555553 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.5     0.003       3.8      15      46 ..       8      40 ..       2      42 .. 0.72
   2 ?    8.4   1.1    0.0019       2.4      15      47 ..     164     194 ..     153     198 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.003
         IBR 15 dpnlkwCprpdCeaiiekseg.cksvtCskCgf 46
                +p+ + Cp  dC++++ ++    + + C +C++
  EGE23713.1  8 TPTPRTCPHGDCGKMFCDTIYkHGIIFCLHCQK 40
                567789*******99977666333466777765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0019
         IBR  15 dpnlkwCprpdCeaiieksegcksvtCskCgfe 47 
                 d    +Cp   C++   ++   ++  C+kC+++
  EGE23713.1 164 DAHAPYCP--HCQSQRFHNTADDDYVCQKCHTK 194
                 555679**..9**8887777767779****975 PP

>> Rep_fac-A_C  Replication factor-A C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.036        46      20      47 ..      13      42 ..       9      64 .. 0.90
   2 ?    7.8   0.2     0.002       2.6      21      47 ..     170     195 ..     153     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.036
                 B--STT---B-EEE..TTTEEEETTTTEEE CS
  Rep_fac-A_C 20 ACpsedCnkKvvee..edgewrCekCdkev 47
                  Cp+ dC k   ++  ++g   C +C+k++
   EGE23713.1 13 TCPHGDCGKMFCDTiyKHGIIFCLHCQKSL 42
                 7**********999878899*******985 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.002
                  --STT---B-EEE.TTTEEEETTTTEEE CS
  Rep_fac-A_C  21 CpsedCnkKvvee.edgewrCekCdkev 47 
                  Cp  +C+   +++ +d+ + C+kC ++ 
   EGE23713.1 170 CP--HCQSQRFHNtADDDYVCQKCHTKS 195
                  88..9998877776999*******9764 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.46   5.8e+02      23      39 ..      17      33 ..      13      35 .. 0.85
   2 ?   12.7   1.7   5.3e-05     0.068       2      25 ..     169     191 ..     168     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.46
                  SSSSBEEEECCCCCCCH CS
  TF_Zn_Ribbon 23 tdCGlVlednsidegpe 39
                  +dCG +  d ++++g+ 
    EGE23713.1 17 GDCGKMFCDTIYKHGII 33
                  58999999999999986 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.3e-05
                   EETTTTCEECHEETSTTCEEESSS CS
  TF_Zn_Ribbon   2 kCPnCgstnlveDpergelvCtdC 25 
                    CP C s +   +++  ++vC +C
    EGE23713.1 169 YCPHCQSQR-FHNTADDDYVCQKC 191
                   6******76.79************ PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.9       1.9   2.5e+03      26      32 ..      11      17 ..       4      24 .. 0.62
   2 ?   -1.7   0.7       2.6   3.3e+03      29      33 ..      35      39 ..      17      43 .. 0.54
   3 ?   10.3   0.1   0.00046      0.59      16      34 ..     157     175 ..     153     180 .. 0.81
   4 ?    5.1   0.0     0.019        24       5      14 ..     185     194 ..     184     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.9
  Zn-ribbon_8 26 ltaCPeC 32
                 + +CP+ 
   EGE23713.1 11 PRTCPHG 17
                 4458874 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.6
  Zn-ribbon_8 29 CPeCg 33
                 C +C+
   EGE23713.1 35 CLHCQ 39
                 55554 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00046
  Zn-ribbon_8  16 evlqsisdapltaCPeCgs 34 
                  ++l++++da  + CP+C+s
   EGE23713.1 157 DKLATSFDAHAPYCPHCQS 175
                  6788777999999****99 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.019
  Zn-ribbon_8   5 eYrCeeCghe 14 
                  +Y C++C+++
   EGE23713.1 185 DYVCQKCHTK 194
                  79*****976 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.93   1.2e+03       7      11 ..      35      39 ..      34      42 .. 0.82
   2 ?    5.7   0.9     0.011        14      21      32 ..     164     176 ..     161     179 .. 0.65
   3 ?    6.8   6.6    0.0051       6.5       6      32 ..     169     193 ..     169     197 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.93
  Zn_ribbon_SprT  7 CtgCg 11
                    C +C+
      EGE23713.1 35 CLHCQ 39
                    99999 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.011
  Zn_ribbon_SprT  21 rrhnYrCrrCk.g 32 
                     + h+ +C++C+ +
      EGE23713.1 164 DAHAPYCPHCQsQ 176
                     6677777777744 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0051
  Zn_ribbon_SprT   6 rCtgCgreythhlsirrhn.....YrCrrCkg 32 
                     +C++C+++  +h      n     Y C++C+ 
      EGE23713.1 169 YCPHCQSQ-RFH------NtadddYVCQKCHT 193
                     7*****65.444......333566******96 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       9.7   1.2e+04       5       7 ..      19      21 ..      18      21 .. 0.63
   2 ?    1.7   0.1      0.18   2.4e+02       1       8 [.      34      41 ..      34      44 .. 0.78
   3 ?    6.1   0.3    0.0076       9.8      13      19 ..     167     173 ..     164     176 .. 0.74
   4 ?    2.5   0.1     0.097   1.2e+02       2       8 ..     188     194 ..     182     196 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 9.7
  zinc_ribbon_2  5 CGa 7 
                   CG+
     EGE23713.1 19 CGK 21
                   775 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.18
  zinc_ribbon_2  1 fCpnCGae 8 
                   fC +C + 
     EGE23713.1 34 FCLHCQKS 41
                   79999876 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0076
  zinc_ribbon_2  13 akFCpyC 19 
                    a++Cp+C
     EGE23713.1 167 APYCPHC 173
                    6777777 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.097
  zinc_ribbon_2   2 CpnCGae 8  
                    C +C+++
     EGE23713.1 188 CQKCHTK 194
                    6666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1280  (0.0713927); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 1812.05
//
Query:       EGE23714.1  [L=355]
Description: hypothetical protein EA1_08762 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.063   13.4  31.6       0.08   13.1   9.2    3.0  3  DUF5518        Family of unknown function (DUF5518)
       0.47    9.1   6.0        1.8    7.2   4.8    1.9  2  EMP70          Endomembrane protein 70
       0.93    9.6   3.9       0.42   10.8   0.1    2.0  2  Thioredoxin_4  Thioredoxin
        1.2    9.4  22.4       0.17   12.1   7.7    3.1  3  DUF3792        Protein of unknown function (DUF3792)
        3.4    7.5   9.4        5.3    6.8   9.4    1.2  1  RIFIN          Rifin
        3.8    7.7   9.4        0.5   10.5   1.3    2.3  2  DUF148         Domain of unknown function DUF148


Domain annotation for each model (and alignments):
>> DUF5518  Family of unknown function (DUF5518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   9.2   2.7e-05      0.08      43     108 ..       9      71 ..       4      76 .. 0.56
   2 ?    6.7  11.6    0.0025       7.6      47     112 ..      90     155 ..      83     159 .. 0.75
   3 ?    0.2   0.0      0.27   8.1e+02      57      73 ..     316     332 ..     302     348 .. 0.47

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-05
     DUF5518  43 ggdskdgavaGalaGligaipvlvlllvlllglvaaigglagfvallvalllvvllllvvllvilg 108
                 ++ s +g  aG+l+Gl+++ ++l+l+lvl + +++  + l g+ ++++++++v++l++++++++++
  EGE23714.1   9 RRPSWRGIFAGLLMGLVVSMIMLALALVLSS-FLS--LDLRGAGIAAGVYTAVTALISAFVAGFFA 71 
                 4455566666666666666666666665553.444..44444555555555555577777766654 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0025
     DUF5518  47 kdgavaGalaGligaipvlvlllvlllglvaaigglagfvallvalllvvllllvvllvilgaiGG 112
                 kd+a+ G+l+++  +++  v+++  ++g+v ++g+++g++a++++ ++ +++ +v+ +++ ga ++
  EGE23714.1  90 KDAALTGMLTAAAIVVISSVFAFNSVTGIVRTAGNAVGTTAGAIGGAASAVTSTVTTVAGAGATAA 155
                 4666777777777777777777766669**************999999966666666666665544 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.27
     DUF5518  57 Gligaipvlvlllvlll 73 
                 Gl+  i +l+ +++ ++
  EGE23714.1 316 GLFWLISTLLTFVASIM 332
                 33322222222222222 PP

>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.8   0.00059       1.8     249     353 ..       2     114 ..       1     163 [. 0.70
   2 ?    0.9   0.0     0.047   1.4e+02     373     397 ..     315     339 ..     301     351 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00059
       EMP70 249 lvhgdVfrpPknsllLsvlvGsGvqlllmalvtlllallgflspsnrgslltvalllyv...llgliaGYvsarl...yktfg.ge.kwkkntlltall 339
                 ++h+ V r P+ + +++ l+ +G+ ++ m+++ l+l l +fls   rg+ + +++++ v   +++++aG+++++     + fg g+    k + lt++l
  EGE23714.1   2 SIHTTVARRPSWRGIFAGLL-MGL-VVSMIMLALALVLSSFLSLDLRGAGIAAGVYTAVtalISAFVAGFFAVKAsapEALFGdGTdILPKDAALTGML 98 
                 58**************8766.343.44555556666666899999999999888765432227788899988877554455542342455667777777 PP

       EMP70 340 lpgllflv..ffllnl 353
                   + ++++  +f +n+
  EGE23714.1  99 TAAAIVVIssVFAFNS 114
                 7666555411444444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.047
       EMP70 373 lllwflisvPlvliGsllgfkkkai 397
                   l+ lis+ l+++ s++g k +a+
  EGE23714.1 315 SGLFWLISTLLTFVASIMGAKTAAA 339
                 567889*************996543 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00014      0.42     100     141 ..     164     205 ..     118     209 .. 0.72
   2 ?   -0.6   0.6      0.45   1.3e+03      79      94 ..     281     296 ..     227     315 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
                    HHHH.....HHHHHTS-------HHHHHHHHHHHHHHT--SS CS
  Thioredoxin_4 100 kelaaealdkdekfeacleeekldalveaeskeakkagiest 141
                     ++ a+a + ++k   ++++++++a+v+++ +++++a+i++t
     EGE23714.1 164 GDITAKAQELYQKATGNISRQDIEAWVAKNNETFDEAQISAT 205
                    235566778899999************************998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.45
                    HHHHHHHHHHHTHHHH CS
  Thioredoxin_4  79 eaflaikallysqqee 94 
                    e+ +  ++++ +++++
     EGE23714.1 281 EYRASTEQAIADAKMN 296
                    1222222222222222 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   7.7   5.7e-05      0.17       4      59 ..      15      74 ..      12      82 .. 0.63
   2 ?    4.0   3.4     0.019        55      70     113 ..      94     136 ..      87     154 .. 0.59
   3 ?    0.4   0.1      0.23     7e+02      70      86 ..     317     333 ..     303     347 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
     DUF3792  4 avlkgllialvitlilllilalllyftsls....ekvlsililiililsvfigGflagkk 59
                 ++ gll++lv+++i+l++  +l  f sl+      +  + + ++ ++s+f++Gf+a k 
  EGE23714.1 15 GIFAGLLMGLVVSMIMLALALVLSSFLSLDlrgaGIAAGVYTAVTALISAFVAGFFAVKA 74
                567777777777777777777777776666333244444444556666778888887765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.019
     DUF3792  70 lvGllyflillllsllikksgsafslkllikllllllagaiGGi 113
                 l+G+l  + ++++s+++  ++ +  +      +++  agaiGG 
  EGE23714.1  94 LTGMLTAAAIVVISSVFAFNSVT-GIVRTAGNAVGTTAGAIGGA 136
                 44444444444445555222222.22222233456677777775 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.23
     DUF3792  70 lvGllyflillllslli 86 
                 l+ l+ +l++++ s+++
  EGE23714.1 317 LFWLISTLLTFVASIMG 333
                 22233333323333332 PP

>> RIFIN  Rifin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   9.4    0.0018       5.3     116     281 ..     123     291 ..     118     317 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0018
       RIFIN 116 gggvapsvGllggiavaawkkaalaaaieaaie.age..aagikaviellkkllk..lselkekklesli.tatnyknvtslvkaikeeyeescllklk 208
                 g +v ++ G +gg a a+ ++++++ a + a++ ag+  aag + + +  ++l++  + +++++++e ++ ++++  ++++++ +++   +    +k++
  EGE23714.1 123 GNAVGTTAGAIGGAASAV-TSTVTTVAGAGATAaAGSsdAAGGDITAK-AQELYQkaTGNISRQDIEAWVaKNNETFDEAQISATVNVLEDMLNKTKAD 219
                 567888999999998777.33333333333333222234777776644.44444422344566888888646666677788888888775444433222 PP

       RIFIN 209 kskaaltsakekekkeasskekikkkvekivekaekkaaaaaaeaaaeataeaekaetaaveattaslqtaii 281
                  + +   ++  + k+  + +++  ++v++iv+  e  a+ +a+  ++e++ e+ +++++a+++  as+++ai 
  EGE23714.1 220 LNGMD-FTNLDTWKNIDEYAKQRADEVQAIVTGDELIARLQAEGLTQEQALEVREETATAYHEYRASTEQAIA 291
                 22222.3333333333444444455555555533444444444444444444444443333333333333332 PP

>> DUF148  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.3   0.00017       0.5      36     102 ..     185     249 ..     160     255 .. 0.77
   2 ?    1.2   1.5      0.12   3.7e+02      23      61 ..     265     303 ..     258     311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
      DUF148  36 eykefeakvkaqkeevkknvtavisnLssvqekleaIldnkslTrkeqkeaieelkkqypkevstlf 102
                 +++++ ak ++  +  +++++a ++ L++  +k +a l+  + T+ ++++ i+e++kq  +ev++++
  EGE23714.1 185 DIEAWVAKNNETFD--EAQISATVNVLEDMLNKTKADLNGMDFTNLDTWKNIDEYAKQRADEVQAIV 249
                 44444444444444..4678999*****************************************997 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.12
      DUF148  23 qleawaekygvtdeykefeakvkaqkeevkknvtavisn 61 
                 q +a+  + + +++y+e++a  +++ + +k n+++ +++
  EGE23714.1 265 QEQALEVREETATAYHEYRASTEQAIADAKMNIEQTLQS 303
                 445555556778899999999999999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1697  (0.0946511); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 2675.66
//
Query:       EGE23771.1  [L=67]
Description: hypothetical protein EA1_08051 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 601.70
//
Query:       EGE23772.1  [L=83]
Description: 4Fe-4S ferredoxin [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-09   35.2  21.2      2e-06   27.3   4.8    3.1  3  Fer4         4Fe-4S binding domain
      3e-06   27.7  12.8     0.0001   22.8  14.1    2.2  2  Fer4_7       4Fe-4S dicluster domain
    1.5e-05   25.0  12.9    2.2e-05   24.5  12.9    1.3  1  Fer4_9       4Fe-4S dicluster domain
    8.1e-05   22.8  16.0     0.0014   19.0   2.5    2.7  2  Fer4_4       4Fe-4S binding domain
    0.00016   21.6  14.4       0.03   14.4   3.8    2.4  2  Fer4_2       4Fe-4S binding domain
    0.00021   22.2  13.8      0.023   15.6   6.1    2.4  2  Fer4_16      4Fe-4S double cluster binding domain
    0.00073   19.6  12.2    0.00073   19.6  12.2    1.5  2  Fer4_10      4Fe-4S dicluster domain
     0.0013   18.5   5.8     0.0016   18.2   5.8    1.3  1  GF_recep_IV  Growth factor receptor domain IV
     0.0071   16.4  20.1       0.14   12.3   5.4    2.4  2  Fer4_6       4Fe-4S binding domain
  ------ inclusion threshold ------
      0.016   15.3  21.1       0.18   12.0  21.3    2.2  1  Fer4_21      4Fe-4S dicluster domain
      0.029   15.3  20.0       0.45   11.6   5.2    2.3  2  Fer4_3       4Fe-4S binding domain
       0.14   12.8   4.2       0.14   12.8   4.2    2.5  2  Fer4_17      4Fe-4S dicluster domain
        2.4    8.4  15.8       0.14   12.4   6.7    2.1  2  Fer4_18      4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   4.8   1.5e-09     2e-06       4      24 .]       5      25 ..       2      25 .. 0.92
   2 !    6.5   0.2    0.0058         8       1      11 [.      31      41 ..      31      41 .. 0.94
   3 !   10.8   3.7   0.00025      0.35      13      23 ..      49      59 ..      49      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.5e-09
                ETTTSSS-THHHHHSTTTEEE CS
        Fer4  4 deekCigCGaCvevCPvgAIt 24
                ++e Ci+C  C+ vCP++AI+
  EGE23772.1  5 ITEECINCDVCEPVCPNEAIS 25
                689****************96 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0058
                EEEETTTSSS- CS
        Fer4  1 vvideekCigC 11
                +vi++ +C+ C
  EGE23772.1 31 YVINPALCTEC 41
                69********* PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00025
                HHHHHSTTTEE CS
        Fer4 13 aCvevCPvgAI 23
                +Cv++CPv++I
  EGE23772.1 49 QCVDICPVDCI 59
                6*********9 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8  14.1   7.3e-08    0.0001       2      51 ..       9      57 ..       8      58 .. 0.88
   2 !   11.4   3.8   0.00027      0.37       2      25 ..      38      67 ..      37      80 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 7.3e-08
      Fer4_7  2 CigCgaCvaaCpvkaieldeeenekgtekveidpekClgC......gaCvavCPtg 51
                Ci+C  C+++Cp++ai+  ++        ++i+p  C+ C       +Cv+ CP++
  EGE23772.1  9 CINCDVCEPVCPNEAISAGDD-------IYVINPALCTECvghydtPQCVDICPVD 57
                *****************9775.......799********976665557******97 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00027
      Fer4_7  2 CigCg......aCvaaCpvkaieldeeene 25
                C++C       +Cv+ Cpv++i  d++  e
  EGE23772.1 38 CTECVghydtpQCVDICPVDCIPKDPKFPE 67
                88883344555***********99987554 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5  12.9   1.6e-08   2.2e-05       1      51 []       8      59 ..       8      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.6e-08
      Fer4_9  1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga......CveaCpkgai 51
                +C++C+ C+++Cp+++++  +  + ++        C++C        Cv++Cp ++i
  EGE23772.1  8 ECINCDVCEPVCPNEAISAGDDIYVINPA-----LCTECVGhydtpqCVDICPVDCI 59
                5****************999999998874.....6****999***********9987 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.5   9.8e-07    0.0014       2      15 ..       7      20 ..       6      28 .. 0.91
   2 !    8.5   5.8    0.0022       3.1       4      16 ..      38      56 ..      35      64 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.8e-07
      Fer4_4  2 erCigCgsCvaaCP 15
                e Ci+C++C+ +CP
  EGE23772.1  7 EECINCDVCEPVCP 20
                78************ PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0022
      Fer4_4  4 CigCg......sCvaaCPq 16
                C++C       +Cv++CP+
  EGE23772.1 38 CTECVghydtpQCVDICPV 56
                665554444449******7 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   3.8   2.1e-05      0.03       7      22 .]       6      21 ..       2      21 .. 0.87
   2 !   12.7   3.0   7.5e-05       0.1       3      21 ..      31      55 ..      29      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.1e-05
      Fer4_2  7 tdrCigCgaCvsaCPa 22
                t+ Ci+C  C  +CP+
  EGE23772.1  6 TEECINCDVCEPVCPN 21
                677************5 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.5e-05
      Fer4_2  3 vvvdtdrCigC.g.....aCvsaCP 21
                +v++++ C++C g      Cv+ CP
  EGE23772.1 31 YVINPALCTECvGhydtpQCVDICP 55
                79**********667888******* PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   6.1   1.7e-05     0.023       2      30 ..       9      38 ..       8      48 .. 0.79
   2 !    8.5   4.3    0.0029         4       7      25 ..      49      65 ..      37      82 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-05
     Fer4_16  2 CgtCgkCaevCPtnaikek.kekeiearec 30
                C++C  C  vCP +ai++    ++i++  c
  EGE23772.1  9 CINCDVCEPVCPNEAISAGdDIYVINPALC 38
                ****************98735555665555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0029
     Fer4_16  7 kCaevCPtnaikekkekei 25
                +C+++CP+++i ++  +++
  EGE23772.1 49 QCVDICPVDCIPKD--PKF 65
                7**********999..333 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6  12.2   5.3e-07   0.00073       6      56 .]       6      55 ..       1      55 [. 0.73
   2 !   10.3   2.6   0.00044       0.6       3      22 ..      32      57 ..      30      74 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.3e-07
     Fer4_10  6 ddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgc...g...aCveaCP 56
                ++ Ci+C  C  +CP        +++  +++   +++  Ct+c       +Cv++CP
  EGE23772.1  6 TEECINCDVCEPVCPN-------EAISAGDDIYVINPALCTECvghYdtpQCVDICP 55
                689*************.......555555555555777777775442667******9 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00044
     Fer4_10  3 vidddtCirCg......kCvkaCPad 22
                vi++  C++C       +Cv+ CP+d
  EGE23772.1 32 VINPALCTECVghydtpQCVDICPVD 57
                78999999998788888999999985 PP

>> GF_recep_IV  Growth factor receptor domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   5.8   1.2e-06    0.0016      48      96 ..       9      59 ..       2      79 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
  GF_recep_IV 48 ekkCvkChpeCeklnes..etCsgpgadeClkCahfkdgseCvseCPegvk 96
                   +C  C+p C +   s  +  +  ++  C++C+   d+++Cv+ CP +  
   EGE23772.1  9 CINCDVCEPVCPNEAISagDDIYVINPALCTECVGHYDTPQCVDICPVDCI 59
                 45799999999654433337788999*********************8865 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   5.4   9.9e-05      0.14       9      24 .]       9      24 ..       6      24 .. 0.93
   2 !    9.5   6.7   0.00077       1.1       3      24 .]      32      59 ..      32      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.9e-05
      Fer4_6  9 CigCgdCvrvCPegai 24
                Ci C+ C+ vCP  ai
  EGE23772.1  9 CINCDVCEPVCPNEAI 24
                ************8887 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00077
      Fer4_6  3 eidpdkCigC.gd.....CvrvCPegai 24
                +i+p +C+ C g      Cv++CP + i
  EGE23772.1 32 VINPALCTECvGHydtpqCVDICPVDCI 59
                69**********************9765 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  21.3   0.00013      0.18       6      57 ..       7      59 ..       5      61 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
     Fer4_21  6 dkCigCgkCliaCedtshqaieidaktvl..kvvedeCvG...CnlCssvCPvedci 57
                ++Ci+C  C  +C++   +ai+  ++ ++  + +  eCvG      C+++CPv dci
  EGE23772.1  7 EECINCDVCEPVCPN---EAISAGDDIYVinPALCTECVGhydTPQCVDICPV-DCI 59
                79************6...8998665554333556778887333358******9.**9 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.2   0.00032      0.45       1      15 []       9      23 ..       9      23 .. 0.93
   2 ?    9.7   6.8    0.0013       1.8       1      14 [.      38      57 ..      38      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00032
      Fer4_3  1 CtgCgaCvevCPvgA 15
                C++C  C+ vCP+ A
  EGE23772.1  9 CINCDVCEPVCPNEA 23
                ************866 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0013
      Fer4_3  1 CtgC.g.....aCvevCPvg 14
                Ct C g     +Cv+ CPv+
  EGE23772.1 38 CTECvGhydtpQCVDICPVD 57
                999*64889999******97 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   4.2   9.8e-05      0.14      44      59 ..       7      22 ..       2      24 .. 0.82
   2 ?    1.0  15.7      0.45   6.2e+02       2      15 ..       9      22 ..       8      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.8e-05
     Fer4_17 44 slCieCgeCerkCPqg 59
                ++Ci+C  Ce +CP++
  EGE23772.1  7 EECINCDVCEPVCPNE 22
                7899999999999986 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.45
     Fer4_17  2 CiqCgyClpeCpsy 15
                Ci+C  C+p+Cp  
  EGE23772.1  9 CINCDVCEPVCPNE 22
                66666666666654 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   6.7    0.0001      0.14      58      94 ..       6      41 ..       2      47 .. 0.81
   2 ?    0.6   3.5      0.46   6.3e+02      63      74 ..      46      57 ..      39      62 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
     Fer4_18 58 agdcidcescvkvcPtgidirkGlqleciscllcida 94
                + +ci+c++c  vcP +  i  G  +  i+ +lc + 
  EGE23772.1  6 TEECINCDVCEPVCPNE-AISAGDDIYVINPALCTEC 41
                689************98.5999999999996666543 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.46
     Fer4_18 63 dcescvkvcPtg 74
                d  +cv++cP++
  EGE23772.1 46 DTPQCVDICPVD 57
                5678*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 641.88
//
Query:       EGE23773.1  [L=164]
Description: pantetheine-phosphate adenylyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-20   73.8   0.0      2e-20   73.4   0.0    1.1  1  CTP_transf_like  Cytidylyltransferase-like
     0.0053   16.5   0.0      0.034   13.8   0.0    1.9  2  Citrate_ly_lig   Citrate lyase ligase C-terminal domain
  ------ inclusion threshold ------
       0.19   11.3   0.0       0.25   10.9   0.0    1.1  1  HRXXH            Putative peptidase family


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   3.4e-24     2e-20       1     142 [.       9     137 ..       9     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 3.4e-24
                      EEEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHHH CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlela.kevdevisvdpweltrevlkklkpdklylvigadv 93 
                      l++GtFDpi++GH++l+ +a+kl++e ++++v+ +  +    kp+++ +eR++ +e++   +++v +v +  l  e+ k++++   ++++g ++
       EGE23773.1   9 LYPGTFDPITNGHIDLVTRALKLFDE-VVIAVAFAHHK----KPIFDFDERVALVEQYfGNNPKVSVVGFEGLLVEFAKEQGVS--AVLRGLRA 95 
                      699***********************.99977766544....5***************99999999999999999*********..******** PP

                      HHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHH CS
  CTP_transf_like  94 ledfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkire 142
                      ++df  ++e+     n+ l         + v+l +++++++iSst +re
       EGE23773.1  96 VSDF--EYEFGLANMNRSLDDD-----FEAVFLTPSQEYSFISSTLVRE 137
                      ****..7777766666666666.....446899***************8 PP

>> Citrate_ly_lig  Citrate lyase ligase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   5.7e-06     0.034       9      65 ..      15      73 ..      13      85 .. 0.81
   2 ?    0.5   0.0     0.072   4.3e+02     148     177 ..     125     152 ..     101     156 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.7e-06
  Citrate_ly_lig  9 nPftlGhryLvekaakendvvhlfvv..kedkslfsyeerlklvkkGikdlknvtlheg 65
                    +P t+Gh  Lv +a k  d v + v   ++ k  f ++er++lv++   +  +v+++  
      EGE23773.1 15 DPITNGHIDLVTRALKLFDEVVIAVAfaHHKKPIFDFDERVALVEQYFGNNPKVSVVGF 73
                    69***************99998877522667789***********98888888877655 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.072
  Citrate_ly_lig 148 keeelisaskvrkllkeknleklaelvPkt 177
                     +e ++is++ vr++ k +   +++++vP++
      EGE23773.1 125 QEYSFISSTLVREVAKLGG--DVSKFVPES 152
                     5567999999999988664..688888876 PP

>> HRXXH  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.2e-05      0.25      71     112 ..      42      83 ..      21      88 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.2e-05
       HRXXH  71 ahardhllrfGnsseiykkyFGdaslaeviGvlekvvsadks 112
                 ah ++ +  f +  +++++yFG+++ ++v+G    +v+  k+
  EGE23773.1  42 AHHKKPIFDFDERVALVEQYFGNNPKVSVVGFEGLLVEFAKE 83 
                 35567799999999*****************98888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1320.31
//
Query:       EGE23774.1  [L=260]
Description: NADPH-flavin oxidoreductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-18   65.5   0.0    9.8e-18   64.8   0.0    1.4  1  Nitroreductase  Nitroreductase family
  ------ inclusion threshold ------
       0.05   13.2   0.0       0.16   11.5   0.0    1.8  2  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   1.1e-21   9.8e-18       3     170 .]      13     178 ..      11     178 .. 0.78

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1.1e-21
                     H--B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEEE. CS
  Nitroreductase   3 kRrSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvlivi. 96 
                     + rSiRk++ ep+++ +l  ilea+r + +++ lq   ++ v dk++r +l++++ +   ++ ++a    +        +  + +++++ ++v+ 
      EGE23774.1  13 EHRSIRKYTGEPIDDKVLTAILEAGRAVSTSSFLQAASIIRVVDKNKRTQLRQISCDMSEEEYQKALADGK-------RLGHAYVEDCAEYLVFc 100
                     78****************************************99******999987777777666665554.......45555555555555554 PP

                     .....---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase  97 .....vatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                            +l+k +++   + +   ++da+++aqn+l aA++lGlg ++ig + ++ ++  ++lglp++  ++  +++G+
      EGE23774.1 101 mdsyrHNQLAKVQTDWT-EVMIIGAIDAALMAQNILAAAESLGLGGVYIGSLRNDIRRAGEILGLPKHVVPLFGLCLGH 178
                     77663333333333333.33455679***************************999989*******7677778888886 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.8e-05      0.16       7      52 ..      12      57 ..       7      83 .. 0.78
   2 ?   -2.2   0.0      0.27   2.4e+03      90     113 ..     133     156 ..     129     209 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.8e-05
                    HH--B---B--S---HHHHHHHHH-----S...S-----EE.E... CS
  TM1586_NiRdase  7 ekRhsvRkYkdealeeelleelkeaieeinkesglelqlvidenka 52
                     + +s+RkY+ e++++++l+++ ea +++++ s l+   +i   ++
      EGE23774.1 12 LEHRSIRKYTGEPIDDKVLTAILEAGRAVSTSSFLQAASIIRVVDK 57
                    4567************************999997776666554433 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.27
                     HHHHHHHHTT-EEEEES--SST.. CS
  TM1586_NiRdase  90 qlvLkltalGlgtcWvggtykkkk 113
                     +++  + +lGlg  ++g+  +  +
      EGE23774.1 133 NILAAAESLGLGGVYIGSLRNDIR 156
                     555567788999999887766633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2076.00
//
Query:       EGE23775.1  [L=154]
Description: SsrA-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-59  197.6   0.7    9.3e-59  197.4   0.7    1.0  1  SmpB      SmpB protein


Domain annotation for each model (and alignments):
>> SmpB  SmpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4   0.7   5.2e-63   9.3e-59       1     143 [.       9     151 ..       9     152 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.4 bits;  conditional E-value: 5.2e-63
                 EEE-CHHHTTSEEEEEEEEEB---HHHHHHHHH--EESSSEEEEEESSCEEEEESEE---S-.-SS----TT--EEBB--HHHHHHHHHHHHHHT-EEE CS
        SmpB   1 iakNkkarhdYeieetyeaGivLkGtEvkslragkvnlkdsyvkikngelfllnvhiseyek.gnifnhdpkrkrkLLlhkkeikklagkveekgltlv 98 
                 i+ Nkkarh+Y+ieetyeaG+vL+G+Evks+ragk+++++syv +kn+e+fl+++hi+++ + +++ n d+ r+rkLLl+++ei+kl g v++kg+++v
  EGE23775.1   9 ICANKKARHEYFIEETYEAGLVLEGWEVKSIRAGKMSITESYVIFKNNEAFLFGAHIQPLLTsSTHINPDNIRTRKLLLNRREIDKLYGMVNQKGYAVV 107
                 679********************************************************999789999******************************* PP

                 EEEEEE.ESSEEEEEEEEEEC--SS--XXXXXXXXXXXXXXXXXX CS
        SmpB  99 plklyfkkkglvKveialakgkklydkretlkerdakreieralk 143
                 +l+ y+ k+g+vK+eialakgkkl+dkr+tlkerd +r+++r +k
  EGE23775.1 108 ALSCYW-KHGRVKCEIALAKGKKLHDKRATLKERDFARDKQRGFK 151
                 ******.88*********************************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1141.02
//
Query:       EGE23776.1  [L=214]
Description: hypothetical protein EA1_08076 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1554.98
//
Query:       EGE23777.1  [L=294]
Description: hypothetical protein EA1_08081 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-22   80.8  40.5      5e-13   49.4  13.8    2.1  2  EamA      EamA-like transporter family
  ------ inclusion threshold ------
       0.03   13.7  12.1      0.036   13.4   7.2    2.3  2  TPT       Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7  18.8   2.3e-13   2.1e-09       3     136 ..      11     140 ..       9     141 .. 0.95
   2 !   49.4  13.8   5.6e-17     5e-13       2     134 ..     152     287 ..     151     290 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 2.3e-13
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsle 101
                  il +l+++++++++ ++  +   +v  ++++f+r+ i++++++++a l+++k+  +  ++ l+++ll+  +  l   l+  +++ +++++ +l++sl+
  EGE23777.1  11 SILGLLIGCILFGMGSLIVAY--VDVGAYAMSFWRLAISSVVFVLLARLFRQKF--PQSRSALIYALLAGAALGLDLALWHESIHAVGPGISTLLNSLQ 105
                 57889999999***9999955..6******************************..999999999999999999999********************** PP

        EamA 102 PvftlilsvlllgekltlkqllgivlillGvllil 136
                   f ++++++++ e+ +l+ql++++l+++Gv+li 
  EGE23777.1 106 IFFLTFIGFYFFAEHQKLIQLVSLILAVMGVVLIA 140
                 *********************************95 PP

  == domain 2  score: 49.4 bits;  conditional E-value: 5.6e-17
        EamA   2 lgillallaalfwaiyfvlskillrkvspl...tltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnasl 96 
                 +g ++ +++  + ai+ +  +++ ++++p    +l ++  l ++i++l+++l+ ++ +    ++ ++ ++l++g++  +laf++++ ++ ++s ++ +l
  EGE23777.1 152 WGFITGIISGACLAISLTWVRQV-HYHEPTplfSLMALVGLGGAIVMLPLMLWLDQDHiLPKTPHELSWILVYGTVMQCLAFGAITFSIPRLSLAVTGL 249
                 8999************9999886.4443331125555666689999999999999999444444559999***************************** PP

        EamA  97 itslePvftlilsvlllgekltlkqllgivlillGvll 134
                 +++ ePv +l+l +++l++++tl+q+lg++l +++++l
  EGE23777.1 250 LLLSEPVAALVLDYFWLNKTITLIQWLGAILTMFAIYL 287
                 ***********************************998 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   7.2     4e-06     0.036      37     227 ..      42     234 ..       4     244 .. 0.75
   2 ?    8.9   1.1   9.2e-05      0.83      34     138 ..     186     291 ..     172     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-06
         TPT  37 vqllvgsvlilvlwalglkkrpkisseflkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvala 135
                  +l++ sv+ ++l +l  +k p+  s+++ a+l  a +  l   l + s+++v    +  + +++ +F   +   ++ e+++l  ++sL+  v+Gv+l 
  EGE23777.1  42 WRLAISSVVFVLLARLFRQKFPQSRSALIYALLAGAALG-LDLALWHESIHAVGPGISTLLNSLQIFFLTFIGFYFFAEHQKLIQLVSLILAVMGVVLI 139
                 556666666555555555555555555544444433322.23334466777777777888889999999999999************************ PP

         TPT 136 svtElsFnli...gfisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllPvallvegvlktpsllkstk.vslkevllllllsgv 227
                 +  E   n+    gfi+ +is  + ++   + +++  +        l+a++++ +++++lP++l +++    p++ ++ + + ++ ++++ l+ g 
  EGE23777.1 140 ASPEFGHNMQagwGFITGIISGACLAISLTWVRQVHYH-EPTPLFSLMALVGLGGAIVMLPLMLWLDQDHILPKTPHELSwILVYGTVMQCLAFGA 234
                 ********963448999999999999988888888777.3488999999*****************995555555555543446667776666665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 9.2e-05
         TPT  34 vsavqllvgsvli.lvlwalglkkrpkisseflkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgG 131
                 +++v l   +v++ l+lw  + +  pk   e+ + ++  +++++l+  + ++s+ + +   t  +  seP+ + +l  + l+++++l  +l  +  +  
  EGE23777.1 186 MALVGLGGAIVMLpLMLWLDQDHILPKTPHELSWILVYGTVMQCLAFGAITFSIPRLSLAVTGLLLLSEPVAALVLDYFWLNKTITLIQWLGAILTMFA 284
                 4555555555555145677788889******************************************************************99999999 PP

         TPT 132 valasvt 138
                 + l sv+
  EGE23777.1 285 IYLGSVK 291
                 9888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       902  (0.0503096); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.32s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2000.62
//
Query:       EGE23778.1  [L=691]
Description: NAD-dependent DNA ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-115  385.6   0.0   2.1e-115  385.2   0.0    1.1  1  DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
    1.6e-30  104.8   1.7    3.7e-30  103.7   1.7    1.6  1  DNA_ligase_OB    NAD-dependent DNA ligase OB-fold domain
    1.3e-22   79.7   0.4    8.8e-22   77.0   0.3    2.5  3  HHH_2            Helix-hairpin-helix motif
    7.8e-16   58.4   0.1    2.3e-10   40.9   0.0    2.7  2  HHH_5            Helix-hairpin-helix domain
      6e-10   39.4   0.0    1.2e-09   38.4   0.0    1.6  1  BRCT             BRCA1 C Terminus (BRCT) domain
    9.8e-07   28.3   0.2    4.7e-05   23.0   0.0    3.0  3  HHH              Helix-hairpin-helix motif
    1.6e-06   28.0   3.8    3.1e-06   27.1   3.8    1.5  1  DNA_ligase_ZBD   NAD-dependent DNA ligase C4 zinc finger doma
    1.6e-06   27.9   0.2    3.8e-06   26.7   0.2    1.6  1  PTCB-BRCT        twin BRCT domain
     0.0028   18.2   0.1      0.029   15.0   0.0    2.6  3  5_3_exonuc       5'-3' exonuclease, C-terminal SAM fold
  ------ inclusion threshold ------
       0.12   12.3   0.2        4.8    7.2   0.1    2.5  2  End_beta_barrel  Beta barrel domain of bacteriophage endosial
       0.16   11.6   0.8       0.44   10.2   0.6    1.9  2  Telomere_Sde2_2  Telomere stability C-terminal


Domain annotation for each model (and alignments):
>> DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.2   0.0  1.3e-118  2.1e-115       4     318 .]      24     334 ..      21     334 .. 0.98

  Alignments for each domain:
  == domain 1  score: 385.2 bits;  conditional E-value: 1.3e-118
                      HHHHHHHHHHHHHHHHHHHCTT-SSC-HCHHHHHHHHHHHHHHHSGGG--TTSCCG-SSSS--CTS-EEE-SS-----EEE-SHHHHHHHHHHH CS
  DNA_ligase_aden   4 kkeleelrellrkydyeYyvldePlvsDaeyDrllkelkelEekfPelitpdSPtqrvgaeleaefkkveHeapllSLdnafdedelkafleri 97 
                       +++++l +ll++++++Yyv+d+P++sD eyD l + l  lE+++P+li+pdSP + vg e++  f++v+He+p+lSL n+f++d+l+ fl+r 
       EGE23778.1  24 IAQMRALIKLLKRHNHAYYVMDAPTISDGEYDGLRRTLMMLEQQHPNLIQPDSPINTVGGEPLPFFTQVAHEVPMLSLGNVFNADDLSGFLRRA 117
                      57899***************************************************************************************** PP

                      HHHSSS--S-EEEEEEEESSEEEEEEEETTEEEEEEE-TTSSEEEB-HHHHCT-TTS-SB-SSSS--SEEEEEEEEE--HHHHHHHHHHHHHCT CS
  DNA_ligase_aden  98 eealgnkekvayvvelKiDGlavsllYengvlvraatRGdGttGedvtaNvktiksiPlklkvdnlpeelevRGEvylrkedFeklNeerleeg 191
                      +e+lg +   +y +elK+DGlavsl Y+ng++ +a+tRGdG++Ged+t+Nv+ti+++Pl+l+  +++++le+RGEv+++k+ FeklN+e +++g
       EGE23778.1 118 NERLGIAID-EYEMELKLDGLAVSLKYQNGQFAQAVTRGDGQVGEDITHNVRTIRNLPLTLTGCEQIKQLEIRGEVLMPKAGFEKLNRESIAQG 210
                      *******96.************************************************************************************ PP

                      ----SSHHHHHHHHHT-SSHHHHHTS--EEEEEEEEEEESS---.SBHHHHHHHHHHCT--B-TT-EEECSHHHHHHHHHHHHHHGGGSSS-EE CS
  DNA_ligase_aden 192 eklfaNpRNaAaGslRqldpkitakrkLkliayglglvekeelevktqsealkvlkklglkvseelklvksieevleyieelekkRdeleyeiD 285
                       k+faNpRNaAaGslRql+++i+a r+L ++ y+++  ++  + ++tqs a+++l +lg+++ + +k++ks++e++++++++ k+R++l++eiD
       EGE23778.1 211 IKTFANPRNAAAGSLRQLNAAIAAARPLAFFGYSVN--DGLPDGITTQSGAMQWLGQLGFEIAP-FKVAKSLDEIQAFYAHVIKTRSQLPFEID 301
                      ***********************************9..8999*******************986.799************************** PP

                      EEEEEESBHHHHHHH-EETSCESSEEEEE---C CS
  DNA_ligase_aden 286 GvVvkvdelalqeeLGftakaPrwAiAyKfpae 318
                      G+V+kv++l+lq++LGf ++ PrwA AyKfpae
       EGE23778.1 302 GLVIKVNDLNLQARLGFLSREPRWATAYKFPAE 334
                      *******************************96 PP

>> DNA_ligase_OB  NAD-dependent DNA ligase OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   1.7   2.2e-33   3.7e-30       2      78 ..     338     414 ..     337     415 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 2.2e-33
                    --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB   2 tkledievqVGRtGaltpvAeLepvelaGttVsratLhnedeierkdirigdtVvvekaGdvIPevvgvvlekreee 78 
                    t+l d+e+qVGRtG+ltpv +Lep++++G+tVs++tLhn+ eier+++++gd V v++aGdvIP+v gv+ e r+++
     EGE23778.1 338 TRLIDVEWQVGRTGTLTPVGRLEPITVGGVTVSNVTLHNFGEIERLGVMVGDVVNVHRAGDVIPKVSGVIGELRPTD 414
                    89**********************************************************************99875 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.4   7.1e+03      13      30 ..     367     384 ..     365     400 .. 0.71
   2 ?   -3.3   0.0       6.3     1e+04      33      52 ..     496     515 ..     489     524 .. 0.72
   3 !   77.0   0.3   5.4e-25   8.8e-22       1      64 []     528     591 ..     528     591 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.4
       HHH_2  13 ektAklLakrFksldaLk 30 
                  ++++   ++F+++++L 
  EGE23778.1 367 VTVSNVTLHNFGEIERLG 384
                 566666678999999985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.3
       HHH_2  33 sleeLlevddiGeeiAqsiv 52 
                 ++e L+++++ G++  ++  
  EGE23778.1 496 QAEYLITLEGMGDKSVTKML 515
                 57889999999988655555 PP

  == domain 3  score: 77.0 bits;  conditional E-value: 5.4e-25
       HHH_2   1 rllfaLGIrhVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsivefFeneknreli 64 
                 r++faLGIr VGe+tA  La++F++l+ + +a+l+ L++v+diGe++Aqsi++fF+ ++n+e++
  EGE23778.1 528 RFIFALGIRGVGESTALSLAQQFGELQSIIEADLQALQAVPDIGEITAQSIYDFFRASHNIEVV 591
                 79***********************************************************987 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.9e-05     0.031       2      56 ..     462     519 ..     461     520 .. 0.86
   2 !   40.9   0.0   1.4e-13   2.3e-10       3      54 ..     531     581 ..     529     584 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-05
                 HHHHTSTT--HHHHHHHHTTT.--SHHHHHHS..-HHHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5   2 eeLlsvsGiGpktAlallsaG.iesvedlaaa..dveeLakipGiGkktAeriilelk 56 
                 +  ++++G+G +  ++  + G + +v+d+ ++   +e L ++ G+G k + +++ +++
  EGE23778.1 462 RRAMDIDGLGSQWLIKFFEMGlVQTVADIYKLhkQAEYLITLEGMGDKSVTKMLSAIE 519
                 56789***************8899*****988224566*************9998875 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 1.4e-13
                 HHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHH CS
       HHH_5   3 eLlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriile 54 
                   l++ G+G++tAl+l+ + ++ ++ +++ad ++L+++p+iG+ tA++i + 
  EGE23778.1 531 FALGIRGVGESTALSLAQQ-FGELQSIIEADLQALQAVPDIGEITAQSIYDF 581
                 6799***************.*****************************876 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   7.5e-13   1.2e-09       3      79 .]     611     685 ..     609     685 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 7.5e-13
                 TTTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   3 ellfhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlldci 79 
                 +l+++g + v+tg+l ++ rde+++++  +G+kv ++vs ktt l++ge    ++k+++a+kl++++v e+++l++i
  EGE23778.1 611 SLPLTGETWVVTGTLGSMGRDEAKDKLIALGAKVAGSVSAKTTRLLAGEK--AGSKLEKAQKLGVTVVLEDEFLALI 685
                 6788888999****************************************..88********************987 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.3     1e+04      13      22 ..     500     509 ..     500     511 .. 0.83
   2 ?    2.0   0.0      0.13   2.2e+02      16      24 ..     535     543 ..     533     548 .. 0.81
   3 !   23.0   0.0   2.9e-08   4.7e-05       2      30 .]     553     581 ..     552     581 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.3
                 HHTSTT-SHH CS
         HHH  13 LlalPGVGpk 22 
                 L +l+G G k
  EGE23778.1 500 LITLEGMGDK 509
                 6789****87 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.13
                 STT-SHHHH CS
         HHH  16 lPGVGpktA 24 
                 + GVG++tA
  EGE23778.1 535 IRGVGESTA 543
                 67******9 PP

  == domain 3  score: 23.0 bits;  conditional E-value: 2.9e-08
                 HHHHHTSSHHHHHTSTT-SHHHHHHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAeaIlsy 30 
                 l+++i+a++  L+a+P +G+ tA++I+++
  EGE23778.1 553 LQSIIEADLQALQAVPDIGEITAQSIYDF 581
                 899***********************986 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   3.8   1.9e-09   3.1e-06       2      27 .]     424     450 ..     423     450 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.9e-09
  DNA_ligase_ZBD   2 CPvCGsavvReegeaiyRCtn.lsCpA 27 
                     CPvC s++  +egea +RCt+ l C A
      EGE23778.1 424 CPVCQSPISLPEGEALARCTGgLYCAA 450
                     ********************77***98 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.2   2.4e-09   3.8e-06       5      59 ..     621     676 ..     618     678 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.4e-09
                 EECB-TTC.HHHHHHHHHHTT-EEESSEETT-SEEEECSS-CHHHHHHHHCT-EEE CS
   PTCB-BRCT   5 vtgysgdd.rkslqklieamGaeyskdltksvTHLicksgeGekyekAkkwgipvV 59 
                 vtg  g+  r+++++ + a+Ga++ + ++ ++T L + +  G+k ekA+k g++vV
  EGE23778.1 621 VTGTLGSMgRDEAKDKLIALGAKVAGSVSAKTTRLLAGEKAGSKLEKAQKLGVTVV 676
                 566666666**********************************************9 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.5     9e+03      24      39 ..     504     519 ..     498     523 .. 0.81
   2 !   15.0   0.0   1.8e-05     0.029      22      47 ..     534     559 ..     532     576 .. 0.87
   3 ?   -1.1   0.0       1.8   2.9e+03      21      35 ..     565     579 ..     561     596 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.5
  5_3_exonuc  24 pgiGektAakLlkeyg 39 
                 +g+G+k  +k+l+ ++
  EGE23778.1 504 EGMGDKSVTKMLSAIE 519
                 7999999999998765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.8e-05
  5_3_exonuc  22 GvpgiGektAakLlkeygsleeilen 47 
                 G++g+Ge tA +L +++g+l++i+e+
  EGE23778.1 534 GIRGVGESTALSLAQQFGELQSIIEA 559
                 9**********************993 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.8
  5_3_exonuc  21 pGvpgiGektAakLl 35 
                 + vp iGe tA+++ 
  EGE23778.1 565 QAVPDIGEITAQSIY 579
                 679********9875 PP

>> End_beta_barrel  Beta barrel domain of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0029       4.8       7      40 ..     364     397 ..     360     413 .. 0.81
   2 ?    2.2   0.0      0.11   1.7e+02       5      23 ..     441     459 ..     438     465 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0029
                      ES-EEE-TTSSEEEEE-TT----TT-EEEEES-S CS
  End_beta_barrel   7 tGGitkaanqrvatiriedhGlfaGdfvnfsnsa 40 
                       GG+t +        +ie  G+++Gd+vn   ++
       EGE23778.1 364 VGGVTVSNVTLHNFGEIERLGVMVGDVVNVHRAG 397
                      69****999999999**************97765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.11
                      EEES-EEE-TTSSEEEEE- CS
  End_beta_barrel   5 hltGGitkaanqrvatiri 23 
                      + tGG+  aa+q+ a i+ 
       EGE23778.1 441 RCTGGLYCAAQQQEALIHF 459
                      78**************985 PP

>> Telomere_Sde2_2  Telomere stability C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       6.4   1.1e+04      14      30 ..     196     212 ..     192     213 .. 0.81
   2 ?   10.2   0.6   0.00027      0.44      12      43 ..     625     656 ..     621     669 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6.4
  Telomere_Sde2_2  14 alglerLKeaLqalGLK 30 
                      + g e+L ++  a+G+K
       EGE23778.1 196 KAGFEKLNRESIAQGIK 212
                      67999999999999998 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00027
  Telomere_Sde2_2  12 LealglerLKeaLqalGLKcGGtlqeRAaRLf 43 
                      L ++g ++ K +L alG K+ G+++ +  RL 
       EGE23778.1 625 LGSMGRDEAKDKLIALGAKVAGSVSAKTTRLL 656
                      67899*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4613.63
//
Query:       EGE23779.1  [L=56]
Description: hypothetical protein EA1_08091 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 416.18
//
Query:       EGE23780.1  [L=340]
Description: phosphotransferase system EIIC family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.1e-104  349.1  46.7   2.4e-104  348.9  46.7    1.0  1  PTS_EIIC_2  Phosphotransferase system, EIIC
  ------ inclusion threshold ------
        1.1    9.6   5.0        3.1    8.1   5.0    1.8  1  MscL        Large-conductance mechanosensitive channel, MscL


Domain annotation for each model (and alignments):
>> PTS_EIIC_2  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.9  46.7  2.7e-108  2.4e-104       1     326 [.      24     336 ..      24     338 .. 0.98

  Alignments for each domain:
  == domain 1  score: 348.9 bits;  conditional E-value: 2.7e-108
  PTS_EIIC_2   1 ikalngmalgifasLlvgailktlgkallitalllqvgevaqsllgvaiGvlvalalkanplvlfslgaagvigsgavklkeaglllagsGdpinalla 99 
                 i+aln malg+f sL+ g+i+k+lg++l     l+++g+ aqsl+g+aiG++va+alka+plvlf+ +++g++g++             +G+pi+a++a
  EGE23780.1  24 IEALNFMALGLFSSLILGLIIKNLGTWLDL-PWLVEIGKQAQSLMGAAIGAGVAYALKAPPLVLFTSITTGFAGAA-------------MGGPIGAFIA 108
                 579***************************.********************************************6.............9********* PP

  PTS_EIIC_2 100 ailavlvgklvskkktkldilvvplvtilvgglvglllapvvksileaigeviasatnlqPllmgiliavvfgilltsPiSSaAiaialgltGlaagaA 198
                 a++ +++gk+v  + t ldi+v+p++t+++g  v+ +++p++++++ ++g++i++a++l+P++m+i++a+++g++lt+PiSSaAiai lgl GlaagaA
  EGE23780.1 109 ALIGAEFGKFVH-RMTPLDIIVTPATTLIIGMAVAGFISPAIDQLMISLGQLIMWAVDLSPIVMSIIVAIAMGLMLTLPISSAAIAISLGLGGLAAGAA 206
                 ************.************************************************************************************** PP

  PTS_EIIC_2 199 aiGcaaqmvgfavaslkenklggllavglgtpklqvpnilknPiilippllasailGpvatlifklqgtaasaGmGtaGLvgplaal..eaagasavll 295
                 ++Gcaaqm+gfav+s+++n++gg +a glgt+++qvpnilknP i++pp+la+a+l+p+at+if++ + + +aGmGt+G+vg++++l  ++ ++ ++ll
  EGE23780.1 207 TVGCAAQMIGFAVMSYRDNGIGGAIACGLGTSMIQVPNILKNPKIWLPPTLAGAVLAPFATAIFGMVNIPSGAGMGTSGFVGQIGTLdaMGISPMTWLL 305
                 ***************************************************************************************666666788*** PP

  PTS_EIIC_2 296 lilvlfvlPlvlalliskvfkklglikegdl 326
                 +i+++++lP++l+++++k+++k+g+ik+gdl
  EGE23780.1 306 IISFHVILPAILTWIFAKLCDKKGWIKTGDL 336
                 *****************************98 PP

>> MscL  Large-conductance mechanosensitive channel, MscL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.0   0.00035       3.1      19      89 ..     107     177 ..      93     195 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00035
        MscL  19 vgviiGaaftkiVtslv..kdiimpliglllggvdfselkiklkaeaavlkygafiqavinFliiafviFliv 89 
                 ++ +iGa f+k V+ ++  + i++p   l++ g+ ++  +i+ + ++ ++++g++i   +++  i + i + +
  EGE23780.1 107 IAALIGAEFGKFVHRMTplDIIVTPATTLII-GMAVAG-FISPAIDQLMISLGQLIMWAVDLSPIVMSIIVAI 177
                 7889************975677788888888.544443.3444556778888888887777654444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2444.80
//
Query:       EGE23781.1  [L=215]
Description: uracil phosphoribosyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-64  217.1   0.0    1.9e-64  216.9   0.0    1.0  1  UPRTase         Uracil phosphoribosyltransferase
    1.7e-12   47.1   0.0    2.9e-12   46.4   0.0    1.3  1  Pribosyltran    Phosphoribosyl transferase domain
  ------ inclusion threshold ------
       0.16   11.9   0.0        2.6    7.9   0.0    2.0  1  DrsE_2          DsrE/DsrF/DrsH-like family
       0.17   11.9   0.0       0.25   11.4   0.0    1.2  1  Pribosyl_synth  Phosphoribosyl synthetase-associated domain


Domain annotation for each model (and alignments):
>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.9   0.0   4.3e-68   1.9e-64       1     207 []       9     211 ..       9     211 .. 0.98

  Alignments for each domain:
  == domain 1  score: 216.9 bits;  conditional E-value: 4.3e-68
     UPRTase   1 vsshpllkakltilRdastsrkdfrelvdriarllaeealsallpveevtvttplgkeysgelldeekialVpilRaGegmeealrellpearvghlgl 99 
                 v++hpl+++kl+++R+++ts+ +fr+l+++++rl+a+ea ++ +++e+  ++  +g+ + ++++ + ++++VpilRaG+gm++++++llp+a++  +gl
  EGE23781.1   9 VIDHPLVRHKLSLMREKETSTYKFRTLTNELGRLMAYEASRD-FEIESFSMQGWCGEITGEQIKGK-TVTIVPILRAGLGMLDGVLDLLPTAKISVVGL 105
                 689***************************************.***************99998886.******************************** PP

     UPRTase 100 qreeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvtaavDeeldekgyivpGlG 198
                 qr+e tlepv +++k+ ++i++r +l+lDp++aTGgs++a i++Lk++g+   +I  l ++a++egv+ + +++p+vk++taa+D++l+e+gyi+pGlG
  EGE23781.1 106 QRDEMTLEPVPFFEKFVSDIDRRPALILDPMLATGGSMVATIDMLKKHGC--TNIKALVLVAAPEGVRLVNKAHPDVKIYTAALDSHLNENGYIIPGLG 202
                 ***********************************************988..69********************************************* PP

     UPRTase 199 DfGDRlFgT 207
                 D+GD++FgT
  EGE23781.1 203 DAGDKIFGT 211
                 ********9 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   6.4e-16   2.9e-12      25     135 ..      68     175 ..      55     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 6.4e-16
                   E.--GGGEEEEEEETTTHHHHHHHHHHS...TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSE CS
  Pribosyltran  25 e.yngkpdvvvgiargGvpfakiladeL...evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpee 117
                   e ++gk +++v+i+r G+ + + + d L   ++ ++ +++     ++ + + +         +d++ +  li D +l+tGg++ a+++ Lk++g++ 
    EGE23781.1  68 EqIKGKTVTIVPILRAGLGMLDGVLDLLptaKISVVGLQRDEMTLEPVPFFEK-------FVSDIDRRPALILDPMLATGGSMVATIDMLKKHGCTN 157
                   44899***********************6444444444444444444444443.......889********************************** PP

                   EEEEEEEE-HHHHHHHHH CS
  Pribosyltran 118 vriavlvdkpateeevdk 135
                   +++ vlv+ p++++ v k
    EGE23781.1 158 IKALVLVAAPEGVRLVNK 175
                   ***********9998865 PP

>> DrsE_2  DsrE/DsrF/DrsH-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00058       2.6      53     113 ..     111     173 ..      17     175 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00058
                 --TT--HHHHHHHHHS-SS--SSS-GGGHHHHHHH..HHHHHCT---HHHHHHHHHHTT-EEE CS
      DrsE_2  53 kvkkkslekmamkmvtrksklskmnmagigtkmmk..kvmkekgvasleeLleaakeagvklv 113
                 +++  ++ +++++ + r+ +l    m   g  m+   +++k++g ++++ L+  a  +gv+lv
  EGE23781.1 111 TLEPVPFFEKFVSDIDRRPALILDPMLATGGSMVAtiDMLKKHGCTNIKALVLVAAPEGVRLV 173
                 344444444455555544455555555555555441246699999999999999999999997 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.6e-05      0.25      77     118 ..     121     162 ..     108     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.6e-05
                     EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEE CS
  Pribosyl_synth  77 vvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvla 118
                      v d+  r a+i+d ++    s+va+ ++lk++G   i +l+
      EGE23781.1 121 FVSDIDRRPALILDPMLATGGSMVATIDMLKKHGCTNIKALV 162
                     699*******************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1631.21
//
Query:       EGE23782.1  [L=330]
Description: luciferase-like monooxygenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-30  106.5   1.6    2.2e-29  102.9   1.6    2.0  1  Bac_luciferase  Luciferase-like monooxygenase
  ------ inclusion threshold ------
       0.15   11.3   0.0        0.2   10.8   0.0    1.3  1  Peptidase_C25   Peptidase family C25


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   1.6   2.4e-33   2.2e-29      20     309 ..      20     296 ..       5     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 2.4e-33
  Bac_luciferase  20 aslrylvelaraaEelGfdavwvaehhggpgga.ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglgt..ggpa 111
                     ++++++v+la++aE+lG+ ++w+aehh++p+ a + +  l+  ++  T +ir+g++ ++l++++P+v+A+ + tL  l+  R++lglg+  g ++
      EGE23782.1  20 QAVDNTVALAQHAEKLGLSRFWIAEHHNMPYLAsSATSLLIQRVLDKTAHIRVGSGGVMLPNHSPFVVAEYYGTLASLYSNRVDLGLGRapGTDP 114
                     479*****************************97666777789**********************************************777777 PP

  Bac_luciferase 112 veerrfGvdhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiPvyvaaaspaglelaarhadglllag.eppeeaaelier 205
                     + +r+  ++hd+    +   ++ l+  + g++          ++++  p  g + +P+y+ ++s +++ laa+ + ++ +a+ + p  + ++++ 
      EGE23782.1 115 ETARAIRRNHDDFAMSFPNDIKELQFYF-GDDA-------DSNKVRAYPAKGLK-VPLYILGSSTESAYLAAQMGLPYAFAShFAPRFLTQAVQI 200
                     78888888*****999999999999999.6553.......33567889999888.**************************************** PP

  Bac_luciferase 206 lragaaeagrdpa...dirvgisltvivadteeeAraea...raliagldfyaldsegagreaeaaeiqeeedanlwagaadavpdelvaatalv 294
                     +r     + +++a   +++v++++   vadt++eA+  a   +++++++      ++++g + + a++  ++ + +  ++ad+     + ++ l 
      EGE23782.1 201 YRN----HFQPSAvldTPKVIVGVNAFVADTDAEAEFLAstsLQFFLNI----VTGQRSGMK-PPATDIAAHIPAHIVQMADS-----MMSCRLL 281
                     **8....555444555***********************8887777322....222222222.33344444444444444444.....578888* PP

  Bac_luciferase 295 Gtpeqvaerlaayae 309
                     G++++vae+l+++++
      EGE23782.1 282 GSAKTVAEQLEQLQS 296
                     ***********9986 PP

>> Peptidase_C25  Peptidase family C25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.2e-05       0.2      98     143 ..      61     120 ..      14     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.2e-05
                    ....................TTT-SEESHHHHS-T.....TSSS-SSEEEEE--SSHHHHHHH CS
  Peptidase_C25  98 s.................lgnestiptDdyyasldgnedsddltpdlavGRipvtsaaeaaav 143
                    +                 l+n+s ++   yy++l +    +++  dl  GR+p t++++a+a+
     EGE23782.1  61 QrvldktahirvgsggvmLPNHSPFVVAEYYGTLAS---LYSNRVDLGLGRAPGTDPETARAI 120
                    04444456666666677788999999999******7...4*******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2336.93
//
Query:       EGE23783.1  [L=44]
Description: hypothetical protein EA1_08111 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       182  (0.0101512); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.28s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 323.11
//
Query:       EGE23784.1  [L=233]
Description: HAD-superfamily subfamily IB hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-28  100.8   0.0    1.4e-28  100.6   0.0    1.1  1  HAD              haloacid dehalogenase-like hydrolase
    0.00047   19.6   0.4     0.0026   17.2   0.4    2.0  1  Put_Phosphatase  Putative Phosphatase
  ------ inclusion threshold ------
       0.05   13.3   0.1       0.38   10.5   0.0    2.3  3  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   2.4e-32   1.4e-28       1     188 []      13     202 ..      13     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 2.4e-32
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprl...wralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpklldpgalella 95 
                 alfD+D+TL+d ds++++ +++++++   +   + ++r+++++++    ++ld   ++e+++++l++ + + l +  + f++++i+p+ ++p+   +++
  EGE23784.1  13 ALFDLDHTLIDVDSDYMWGQYIVEEKLVADddyGITNRQFYENYI---DGTLDATLYNEFVARFLRSKTmPVLLQLRNNFIDKKIKPA-MRPKGIVAIN 107
                 79******************9999999887553334444455555...6777778999*****************************9.99*99999** PP

         HAD  96 ahraaGdrvvvvSgglrplvepllaelg..adevlatelevdd.rltgelglegkpvrgegkvaalrewlaaegegidlee.vvayGDspsDlpllr 188
                  h++ G++vv+ S+++++lv ++++++g  +++ l+t l  ++  +tg   l + p +++gk+ ++++wl+  +++  + e ++ay+Ds +D+pll+
  EGE23784.1 108 NHLRLGHEVVITSATNSFLVPAIAELFGihSKNTLSTPLQIQKdLFTGF--LTDRPNFKDGKLYHINKWLKNMERENLYFEgTYAYSDSKNDIPLLE 202
                 9***************************999999***8888889*****..*****************99876666666666*************96 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   4.4e-07    0.0026       2     114 ..      12     138 ..      11     152 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.4e-07
  Put_Phosphatase   2 lvvfDFDktiidedsdnw....vvde.l......patel...feelretlrkglwnelmdrvlkelheq...gvseadikkvlrsiplspglve 78 
                      l++fD D+t+id+dsd +    +v+e l      + t++    + +  tl  +l+ne+++r l+        + + + i k ++      g+v+
       EGE23784.1  12 LALFDLDHTLIDVDSDYMwgqyIVEEkLvadddyGITNRqfyENYIDGTLDATLYNEFVARFLRSKTMPvllQLRNNFIDKKIKPAMRPKGIVA 105
                      789************9752222333212111111222111112446667777889999988887644431113555667777776666666666 PP

  Put_Phosphatase  79 likslakkkleldliiiSDaNsffieeileaagled 114
                      + ++l   +l+ +++i S +Nsf +  i e  g+++
       EGE23784.1 106 INNHL---RLGHEVVITSATNSFLVPAIAELFGIHS 138
                      66666...6899***********9999988888775 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.18   1.1e+03       3      14 ..      15      26 ..      13      33 .. 0.84
   2 ?   -1.9   0.0      0.37   2.2e+03      21      48 ..     103     130 ..      91     140 .. 0.72
   3 ?   10.5   0.0   6.3e-05      0.38     200     229 ..     182     211 ..     167     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.18
                 EEIIIIIS-TTS CS
  Hydrolase_3  3 lDlDGTLlnsdk 14
                 +DlD TL++ d+
   EGE23784.1 15 FDLDHTLIDVDS 26
                 9******99765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.37
                  HHHHHHHHHTTSEEEEE-SS-HHHHHHH CS
  Hydrolase_3  21 keaikklkekgikvviATGRslravlpv 48 
                  + ai++    g++vvi+++ +   v  +
   EGE23784.1 103 IVAINNHLRLGHEVVITSATNSFLVPAI 130
                  5577777778999999998766655555 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 6.3e-05
                  T--GGGEEEEESSGGGHHHHHHSSEEEEET CS
  Hydrolase_3 200 nisleeviafGDgeNDieMLeaaglgvAmg 229
                  n+  e ++a  D++NDi++Le++++ v++ 
   EGE23784.1 182 NLYFEGTYAYSDSKNDIPLLEWSDNPVCIT 211
                  55556788888****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1670.63
//
Query:       EGE23785.1  [L=331]
Description: polyamine ABC transporter ATPase subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-38  131.5   0.0    5.3e-38  130.6   0.0    1.4  1  ABC_tran      ABC transporter
    2.4e-09   37.4   1.2     0.0011   18.8   0.2    2.6  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.3e-06   28.4   0.0    2.8e-06   27.4   0.0    1.6  1  TOBE_2        TOBE domain
    5.3e-06   26.0   0.4    1.3e-05   24.7   0.4    1.6  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00026   21.0   0.1    0.00064   19.7   0.1    1.7  1  RsgA_GTPase   RsgA GTPase
    0.00039   20.8   0.4    0.00092   19.6   0.3    1.6  1  AAA_16        AAA ATPase domain
    0.00048   20.6   0.0     0.0019   18.6   0.0    1.9  2  AAA           ATPase family associated with various cellular 
    0.00069   20.2   0.7     0.0019   18.7   0.6    1.9  1  AAA_23        AAA domain
     0.0042   16.7   0.6      0.048   13.2   0.6    2.2  1  AAA_25        AAA domain
     0.0075   16.0   0.1      0.018   14.8   0.1    1.6  1  AAA_29        P-loop containing region of AAA domain
     0.0089   16.0   0.0      0.015   15.3   0.0    1.4  1  Rad17         Rad17 P-loop domain
  ------ inclusion threshold ------
      0.012   15.9   0.8      0.051   13.9   0.6    2.1  1  AAA_22        AAA domain
      0.023   13.5   0.3        2.1    7.0   0.0    2.9  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.031   14.8   0.0       0.13   12.8   0.0    2.0  2  AAA_18        AAA domain
      0.036   14.1   0.0      0.097   12.7   0.0    1.7  2  AAA_5         AAA domain (dynein-related subfamily)
      0.053   13.4   0.0      0.099   12.6   0.0    1.4  1  NACHT         NACHT domain
      0.058   13.8   0.0       0.28   11.6   0.0    2.1  2  RNA_helicase  RNA helicase
      0.068   13.2   0.0       0.16   12.0   0.0    1.9  1  MMR_HSR1      50S ribosome-binding GTPase
      0.095   12.9   0.1       0.16   12.1   0.1    1.7  1  AAA_33        AAA domain
      0.096   12.7   0.0       0.21   11.6   0.0    1.6  1  AAA_14        AAA domain
       0.13   11.6   0.4        5.4    6.3   0.0    2.3  2  ATPase        KaiC
       0.17   11.6   0.2          6    6.5   0.0    2.7  3  AAA_24        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   6.5e-41   5.3e-38       2     136 ..      20     161 ..      19     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 6.5e-41
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 ++++l++++g++v ++G++G+GKStLl+++agl++ ++G+i l+++d+++  l+  +++i++++q+  lfp++tv++n             e+  ++++
  EGE23785.1  20 DDLNLNVEKGSLVTLLGPSGCGKSTLLRCIAGLETLNQGSIILNNQDITY--LKPQKRRIAMVFQNYALFPNMTVADNvefglkikkvsleERLTKVKD 116
                 899***********************************************..********************************999844444444555 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +l+ ++l+ +++++    p+sLSgGqkqrvalaral+ +p+llllDEp 
  EGE23785.1 117 VLDLVELTSFAQQK----PESLSGGQKQRVALARALVMEPDLLLLDEPL 161
                 55555555555555....5*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   3.9e-06    0.0031       3      53 ..      33      74 ..      31     119 .. 0.63
   2 !   18.8   0.2   1.4e-06    0.0011     212     298 ..     124     193 ..      93     199 .. 0.76
   3 ?   -2.1   0.0       3.2   2.6e+03     176     210 ..     221     255 ..     213     297 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.9e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlyd 53
                 l Gp g+GKS+LL+++ +l            +++++  +  ++ +l +  
  EGE23785.1 33 TLLGPSGCGKSTLLRCIAGLET---------LNQGSIILNNQDITYLKPQK 74
                699***************9943.........33333333333344444444 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.4e-06
      AAA_21 212 vderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 +++++                 + +lS G+k+  al+ al   +   +lll+DEp + L+ kl ++l   +k+ ++  g   +++TH+
  EGE23785.1 124 TSFAQ---------------QKPESLSGGQKQRVALARALVMEP---DLLLLDEPLSALDAKLRKSLRMQIKRIQKeLGLTTLFVTHD 193
                 33333...............337789*******9*******999...9********************66655555589999*****8 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.2
      AAA_21 176 fgfakekrllqrlvrslklveielsdlgegeelia 210
                 ++ ++++r++ +++++++   +e  +++ +++l++
  EGE23785.1 221 LYTQPNNRFTAGFIGHYNIGYFESVKSKSAKQLSM 255
                 55566666666666666666665555554444443 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   3.4e-09   2.8e-06       1      68 [.     256     321 ..     256     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 3.4e-09
      TOBE_2   1 laiRPEklrlaaaggan.glsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelsw 68 
                 +aiRPE + l   +++n  ++G++ +++  G  +ry+v+++ g ++ v + n+ + s+l++  +V l +
  EGE23785.1 256 MAIRPETILL---DTDNgDIPGVILERTLTGGVVRYQVRTDYGDIFDVDVLNHGKISQLKVNCKVFLII 321
                 59********...77677****************************99999998525777777776655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.4   1.6e-08   1.3e-05      25     207 ..      30     203 ..       3     214 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.6e-08
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE.EEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdnedkklkiekeevsisrrvkrkge.seykingkevtk 120
                 s+  ++Gp G+GKs ll  i    G ++       +  ++i +    +  + +k +++++f+n         +++++  +v+ + +  ++ ++++  + 
  EGE23785.1  30 SLVTLLGPSGCGKSTLLRCI---AGLETL------NQGSIILNnqDITYLKPQKRRIAMVFQNYALF-----PNMTVADNVEFGLKiKKVSLEERLTKV 114
                 456899**************...454333......444445442445667889999*****999887.....666666666555554678888888888 PP

                 HHHHHHHHCTT-...STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSH.HHCCC-SC CS
                 xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx.xxxxxxxx RF
       SMC_N 121 kevsellesagi...skelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislre.emlekadk 207
                 k+v +l+e + +   ++e+LSgG+k+ vala  +         l llDe  +aLD+k +k +   +k+ +k+     + +++++ e l+ +d+
  EGE23785.1 115 KDVLDLVELTSFaqqKPESLSGGQKQRVALARALV----MEPDLLLLDEPLSALDAKLRKSLRMQIKRIQKElgLTTLFVTHDQdEALAMSDE 203
                 8888888777662226789*******999886643....334589*********************998888443444555544044444455 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   7.9e-07   0.00064      89     130 ..      18      60 ..       3      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.9e-07
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                   +++l+ ++++ ++++l+G+SG GKStL+  +++ ++l+ g++
   EGE23785.1  18 VIDDLNLNVEKgSLVTLLGPSGCGKSTLLRCIAGLETLNQGSI 60 
                  577888888777999*****************99877777665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   1.1e-06   0.00092      21      49 ..      28      53 ..      17     186 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-06
      AAA_16 21 sgrpelvllsGesGvGKsslvrellrale 49
                +g  +lv l G+sG+GKs+l+r+++  le
  EGE23785.1 28 KG--SLVTLLGPSGCGKSTLLRCIAG-LE 53
                33..799****************994.33 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.4e-06    0.0019       2      52 ..      33      83 ..      32      97 .. 0.91
   2 ?   -0.7   0.0       2.2   1.8e+03      49      71 ..     143     164 ..      92     198 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.4e-06
                EEESSTTSSHHHHHHHHHHH..HTHEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavake..lgvefleisgsellskyvgesekkirelfke 52
                 l Gp G+GK++l + +a    l++  + ++  +++  y++ ++++i+++f++
  EGE23785.1 33 TLLGPSGCGKSTLLRCIAGLetLNQGSIILNNQDIT--YLKPQKRRIAMVFQN 83
                699***************875588999*********..*************97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.2
                 HHHHHHHTSTSEEEEEETGGGHH CS
         AAA  49 lfkeakekakpsilfiDEidala 71 
                  +++a  + +p  l++DE  +  
  EGE23785.1 143 ALARALVM-EPDLLLLDEPLSAL 164
                 33333333.57888888744444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.6   2.3e-06    0.0019       7      40 ..      13      50 ..       5     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.3e-06
      AAA_23  7 frsf...rdqeidFsk.gltlItGpNGaGKTTildAik 40
                f+s+   +d +++ +k  l+ + Gp G+GK+T+l++i 
  EGE23785.1 13 FGSLtviDDLNLNVEKgSLVTLLGPSGCGKSTLLRCIA 50
                777777788888887736999***************96 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.6   5.9e-05     0.048      31      98 ..      27     104 ..      19     196 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-05
      AAA_25  31 pagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEds.edelrrRlravgeal...................r 98 
                  +g+l+ l G++g+GK+tl+  +a   +     l      qg  ++ + + +  +  +rR++ v++++                   +
  EGE23785.1  27 EKGSLVTLLGPSGCGKSTLLRCIAGLET-----L-----NQGSIILNNQDITyLKPQKRRIAMVFQNYalfpnmtvadnvefglkikK 104
                 689***************9865553322.....2.....2444444444444333445555555555555555555555555555551 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.2e-05     0.018      17      40 ..      24      47 ..      16      63 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.2e-05
      AAA_29 17 ieidlkg.atlltGpsGsGKSTllD 40
                ++++ kg  + l GpsG GKSTll 
  EGE23785.1 24 LNVE-KGsLVTLLGPSGCGKSTLLR 47
                5555.44578899**********95 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-05     0.015      40      67 ..      24      51 ..      16     126 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-05
       Rad17 40 LesrkkriLLisGPsGCgkstvvkvLsk 67
                L+ +k  ++ + GPsGCgkst ++ ++ 
  EGE23785.1 24 LNVEKGSLVTLLGPSGCGKSTLLRCIAG 51
                566667789999***********99875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.6   6.2e-05     0.051       4      29 ..      28      53 ..      25     160 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleql 29
                + +++++ G+sG+GK+tllr ++   
  EGE23785.1 28 KGSLVTLLGPSGCGKSTLLRCIAGLE 53
                567899**************987554 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.077        63     242     265 ..      26      50 ..      23      52 .. 0.84
   2 ?    7.0   0.0    0.0026       2.1     324     417 ..     135     213 ..     124     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.077
                 E-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAle 265
                 + kG ++++ G+   GKsTLL+ ++
  EGE23785.1  26 VEKGsLVTLLGPSGCGKSTLLRCIA 50 
                 677878888999999******9985 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0026
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEE CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpk 417
                 SG   q +++++al ++ +llL+DE  sA              +k +   ++l  +++++ k+lg++t+ v+   ++ l+++d+v+l+++ k++
  EGE23785.1 135 SGGQKQRVALARALVMEPDLLLLDEPLSALD------------AKLR---KSLRMQIKRIQKELGLTTLFVTHDQDEALAMSDEVVLLNKGKIE 213
                 6666677777777777777777777777643............2222...45566677777888888888888888888888888888876665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00016      0.13       1      54 [.      32      79 ..      32     119 .. 0.83
   2 ?   -0.7   0.0       2.4   1.9e+03      20      39 ..     170     187 ..     137     259 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00016
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrlde 54
                + l G++G+GK+tl + ++ ++    n ++++ +n+  ++  p+    ++r+ +
  EGE23785.1 32 VTLLGPSGCGKSTLLRCIAGLE--TLNQGSIILNNQDITYLKPQ----KRRIAM 79
                6799**************9999..99999999998888887777....444444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.4
      AAA_18  20 krlgfgvnlrdvakenglll 39 
                 k+l    +++ + ke gl +
  EGE23785.1 170 KSL--RMQIKRIQKELGLTT 187
                 222..333334444444444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012     0.097       2      37 ..      32      68 ..      31      82 .. 0.81
   2 ?   -3.1   0.0       8.7   7.1e+03      92     124 ..     203     241 ..     199     253 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
                EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT-- CS
       AAA_5  2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtt 37
                v L+Gp+G+gKs+l + +a +   ++  ++++++d+t
  EGE23785.1 32 VTLLGPSGCGKSTLLRCIAGLEtLNQGSIILNNQDIT 68
                679*************999887655556666777766 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.7
                 SEEE..-SSSEEE---............-EEEEEESS-- CS
       AAA_5  92 rrllleeggelvkakndd.ller.....frviatanpld 124
                 + +ll++g+ +++  +d+  +++       +i+ +n  +
  EGE23785.1 203 EVVLLNKGKIEQHSTPDTlYTQPnnrftAGFIGHYNIGY 241
                 555555555555555555444437776667777777666 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012     0.099       2      21 ..      31      50 ..      30      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                lv l G++G+GK+tLl+ +a
  EGE23785.1 31 LVTLLGPSGCGKSTLLRCIA 50
                7899*************997 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00034      0.28       2      46 ..      33      72 ..      32     121 .. 0.69
   2 ?   -0.8   0.0       2.4     2e+03      25      64 ..     211     250 ..     199     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00034
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdg 46
                   l Gpsg+GKStl + +a  l+    + +++s++ +n + ++++ 
    EGE23785.1 33 TLLGPSGCGKSTLLRCIA-GLE----TLNQGSIILNNQDITYLKP 72
                  689**********99933.333....3444555555555555544 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.4
  RNA_helicase  25 klklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkde 64 
                   k+++++++++ + +p++ f  g+ g+  + +++  ++k+ 
    EGE23785.1 211 KIEQHSTPDTLYTQPNNRFTAGFIGHYNIGYFESVKSKSA 250
                   4555555566666999999999999998888887777765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0002      0.16       2      42 ..      32      78 ..      31     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0002
                EEEEESTTSSHHHHHHHHHT.....S.TEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg.....e.kaivsdkpgtTrdinegrvk 42
                v ++G +  GKStL++ + g     +   i +++  t ++++++r++
  EGE23785.1 32 VTLLGPSGCGKSTLLRCIAGletlnQgSIILNNQDITYLKPQKRRIA 78
                6799**************97655533344667777777888888877 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1    0.0002      0.16       1      20 [.      31      50 ..      31     201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
      AAA_33  1 lvllvGlpGsGKstlaerll 20
                lv l G++G+GKstl++ ++
  EGE23785.1 31 LVTLLGPSGCGKSTLLRCIA 50
                78899**********99876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00026      0.21       4      37 ..      31      71 ..      28      98 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00026
      AAA_14  4 ilvitGaRrvGKTtllkqlikell.......vkkesilyin 37
                ++++ G+  +GK+tll+ ++  +         ++++i y++
  EGE23785.1 31 LVTLLGPSGCGKSTLLRCIAGLETlnqgsiiLNNQDITYLK 71
                7899************9998666633333333333333333 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.084        68      17      35 ..      27      45 ..      18      48 .. 0.87
   2 ?    6.3   0.0    0.0066       5.4     137     169 ..     165     198 ..     157     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.084
      ATPase 17 pegrvvlitGepGtGKtif 35
                 +g+ v + G +G+GK+++
  EGE23785.1 27 EKGSLVTLLGPSGCGKSTL 45
                578999**********987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0066
      ATPase 137 eavaReilrqlvrvl.kklgvTailvseksssee 169
                 +a++R+ lr  ++++ k+lg+T+++v+  ++++ 
  EGE23785.1 165 DAKLRKSLRMQIKRIqKELGLTTLFVTHDQDEAL 198
                 5789999998888888**********99766554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0074         6       5      22 ..      32      49 ..      28      70 .. 0.88
   2 ?   -1.7   0.0       2.5     2e+03     162     193 ..     199     231 ..     172     232 .. 0.70
   3 ?    1.8   0.0      0.21   1.7e+02      15      35 ..     246     271 ..     239     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0074
      AAA_24  5 iliyGpsgiGKTtlakel 22
                + + Gpsg GK+tl++ +
  EGE23785.1 32 VTLLGPSGCGKSTLLRCI 49
                6799**********9865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.5
      AAA_24 162 eevDlvlranlkred.kvgervlktsksesida 193
                  ++D+v+ +n  + +  ++  +l+t+++++++a
  EGE23785.1 199 AMSDEVVLLNKGKIEqHSTPDTLYTQPNNRFTA 231
                 466777777655444766667899999998887 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.21
      AAA_24  15 KTtlakel.....gpkplfidtekGl 35 
                 K+ +ak+l      p+++++dt++G 
  EGE23785.1 246 KSKSAKQLsmmaiRPETILLDTDNGD 271
                 8999999999999***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 2408.99
//
Query:       EGE23786.1  [L=281]
Description: polyamine ABC transporter permease protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-11   43.0  15.6    4.1e-11   43.0  15.6    2.4  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   8.8         1   1.8e+04      24      57 ..      32      95 ..      16     107 .. 0.39
   2 !   43.0  15.6   2.3e-15   4.1e-11      15     175 ..     110     268 ..     102     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 1
  BPD_transp_1 24 iivllslPsfvlaillvlvf.................................vilsilghlilpvi 57
                   i l+++P+++ ++     +                                 ++   +g++il++i
    EGE23786.1 32 LISLMMIPVVATGVYA---VsgdwsqsilpeswtikwlleiwtqerflwacfySLVLCIGSAILSII 95
                  3333333333322222...022344444444444444444444444222222222222222222222 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 2.3e-15
  BPD_transp_1  15 kldkllrpliivllslPsfv..laillvlvf...vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPna 106
                    +++++ ++ i+++++P++v  + il    +   ++ s++g++++ +   +++ ++++ r + +++  +  kdl+e a +lGas+ qi+ +++lPn+
    EGE23786.1 110 QWQRWINFILILPFTVPPIVasISIL---DLysgILGSKIGTTFILIGCYFTIVLPFVYRSLDNNFRAIGVKDLIESANLLGASTPQIIAYILLPNL 203
                   5689999*************443333...223557779999999999999999999999999999999999************************** PP

  BPD_transp_1 107 lppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadil 175
                   +p +i  +++++++l+g++v + +l++++    ++ + + +   +++   ++ a+vi+++ +++++ ++
    EGE23786.1 204 KPGFIVAFFISIAFLIGEFVYVNILIGGH--FETIQTYLFNLKNQSGH--LSSAVVISYFCILIIITAF 268
                   **************************554..33333333333333333..3344444444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2045.01
//
Query:       EGE23787.1  [L=305]
Description: polyamine ABC transporter permease protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-08   33.2  35.6    4.3e-06   26.6  35.6    2.3  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6  35.6   2.4e-10   4.3e-06      16     183 ..      27     302 ..      17     304 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.4e-10
  BPD_transp_1  16 ldkllrpliivllslPsfvlaillvlvf..................................................................... 43 
                    d++l +l + l  lP++vl+++++l+                                                                      
    EGE23787.1  27 ADNALKGLGEYLALLPFVVLVVMFILLPlgliifnafyneygefgfgnfskifnsefylqalvlslkislyssligiiigfqgayslyaikdsalgr 123
                   5566666666666666666333322111234444555666666666666666666666666666666666666666666666666666666666666 PP

  BPD_transp_1  44 .......................................vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkv 101
                                                          +++ i  +++ ++++ ++++++p+++l+   a++ l +++ e a +lGas++q f+kv
    EGE23787.1 124 alislntllsnfsgvplafammiifgssgvitlilsrfgINDLIDIYSFKGILLSYTYFQIPVAILLLFPAISGLKREWQESAALLGASTRQYFFKV 220
                   666666666666666666666666678899999999985444444477778********************************************** PP

  BPD_transp_1 102 vlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.nggvlalviavlllnlvadilqrlldprv 183
                    lP + p i+ ++i+ f+++lg+++ ++ l+s++ ++ l +++  +   ++++   +++al+++++ l+l++ +++++l  r 
    EGE23787.1 221 GLPVLSPAILGTFIILFANALGAYATAYALTSGS-FNILPIRIAAMIAGNLTLePNMAAALALILVGLMLIITFVHQYLLSRY 302
                   *******************************666.666666666666656555889999999999999999999999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2334.34
//
Query:       EGE23788.1  [L=271]
Description: type I phosphodiesterase/nucleotide pyrophosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-22   78.9   0.1    1.3e-19   71.1   0.1    2.0  1  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
    1.7e-05   24.3   0.2    4.3e-05   23.0   0.0    1.8  2  Metalloenzyme  Metalloenzyme superfamily
    2.4e-05   24.5   0.2     0.0019   18.3   0.1    2.5  3  PglZ           PglZ domain


Domain annotation for each model (and alignments):
>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.1   2.1e-23   1.3e-19       1     235 [.       7     211 ..       7     221 .. 0.71

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 2.1e-23
                   EEEEEETT-BTTHHHHHGSTSHHHHHHHHHSEEESE.EE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEE.ETTTTEEEEEETTTTGGGGGCTT... CS
  Phosphodiest   1 vlvislDGlradlldrlaellpnlaaLakegvsapn.lrpvfPtlTfpnhaslvTGlyPgeHGivgNtfy.drktgeyvvfvtededaprwwqg... 92 
                   v++++lDGl ad        + +l+aL ++    ++ l +  P+l+ p   +++TG +P + Gi++N++   +k +++ ++++++++    ++    
    EGE23788.1   7 VILVVLDGLNADVGLT---CMGFLQALCEQHKAKAYkLQCELPSLSRPLYECILTGVRPTDSGIYHNQINrLSKEKSVFNYCIQSNK----VTAaaa 96 
                   79**********9887...8*********98888888*******************************8723344444566666555....333222 PP

                   .S-HHHHHHHTHTTC.EEEESE...TTTTSEBTTCT.SC.TBHHSBTCT.CSTTSCHHHHHHHHHHHHHHHCHTHSHHHHHCTSSESEEEEEECCCH CS
  Phosphodiest  93 .epiwdtaakarglk.aaalfw...pgsevdystyyylvsetppryleddfnakvpledkvdkavlqtwldaafakvvlekelekpdlllvyleetD 184
                    +    +    ++++   a+f      s  ++        +   +y+ dd   + +l d++d+             + +    ++pd+llv+ +++D
    EGE23788.1  97 yY----WISELYNRSpFQAAFDrhtNDSSLPI--------QFGHFYY-DDAYPDSHLFDDADH------------LRKI----YRPDFLLVHSMNID 164
                   21....22222111112222221112222222........3444444.222233333333333............2222....9************* PP

                   HHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---E CS
  Phosphodiest 185 tvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGma 235
                    +gH+fG +s++ ++a rr+D+ + + +++  ++     ++ii++SDHGm+
    EGE23788.1 165 DAGHRFGLNSMQYRNAARRADMLLSNYINLWLDD----GYQIIVTSDHGMN 211
                   *****************************97777....7***********7 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.16   9.8e+02       2      11 ..       6      15 ..       5      23 .. 0.88
   2 !   23.0   0.0   7.1e-09   4.3e-05     132     193 ..     153     216 ..      72     260 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.16
                   EEEEEEETTB CS
                   xxxxxxxxxx RF
  Metalloenzyme  2 kvvlvvlDGl 11
                   kv+lvvlDGl
     EGE23788.1  6 KVILVVLDGL 15
                   89*******8 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 7.1e-09
                    -SEEEEEE-HHHHHHHTT-HH..HHHHHHHHHHHHHHHHHTTS-TTTEEEEEE-SSB--TTTSS CS
                    xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 132 fdlvvvniknaDmvGHtgdle..atiaaieaaDeavkeildaieqvdgilvvtADHgnaedmvk 193
                     d+++v+  n D +GH+  l+  ++ +a  +aD  + + ++   +++  ++vt+DHg  +d+ +
     EGE23788.1 153 PDFLLVHSMNIDDAGHRFGLNsmQYRNAARRADMLLSNYINLWLDDGYQIIVTSDHGMNNDLSH 216
                    58**************97665227899******************************9999887 PP

>> PglZ  PglZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.014        86       1      26 [.       5      30 ..       5      65 .. 0.68
   2 ?   -1.7   0.0      0.44   2.6e+03     116     130 ..      66      80 ..      63     105 .. 0.72
   3 !   18.3   0.1   3.2e-07    0.0019     105     169 ..     147     210 ..     132     211 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.014
        PglZ  1 ekvfvIisDalryeaweelkqlLnke 26
                +kv++++ D+l  +++ + +  L+  
  EGE23788.1  5 NKVILVVLDGLNADVGLTCMGFLQAL 30
                69*************99988777653 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.44
        PglZ 116 yivhnkvDalgdkas 130
                 +i+hn++  l+ ++s
  EGE23788.1  66 GIYHNQINRLSKEKS 80 
                 589999999887433 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 3.2e-07
        PglZ 105 rrellkdkevvyivhnkvDalgdka.steqksfeaveeslkelkelvkslleengykvlltaDHGf 169
                  r+ +   + + +   ++D+ g++  +   +  +a++++   l++ ++  l++ gy++++t+DHG 
  EGE23788.1 147 LRK-IYRPDFLLVHSMNIDDAGHRFgLNSMQYRNAARRADMLLSNYINLWLDD-GYQIIVTSDHGM 210
                 444.4445666677778******5314444556677777789***********.***********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2279.19
//
Query:       EGE23789.1  [L=368]
Description: extracellular solute-binding protein family 1 protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-32  112.4   0.7    3.5e-32  111.8   0.7    1.2  1  SBP_bac_6       Bacterial extracellular solute-binding protei
    2.9e-11   43.7   5.8    2.9e-11   43.7   5.8    1.8  2  SBP_bac_8       Bacterial extracellular solute-binding protei
    1.1e-06   28.6   0.5      2e-06   27.7   0.3    1.6  2  SBP_bac_11      Bacterial extracellular solute-binding protei
     0.0026   17.4   0.1     0.0045   16.6   0.1    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
      0.003   17.4   0.0     0.0052   16.6   0.0    1.3  1  TACC_C          Transforming acidic coiled-coil-containing pr


Domain annotation for each model (and alignments):
>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.7   9.7e-36   3.5e-32       1     220 [.     103     321 ..     103     340 .. 0.90

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 9.7e-36
   SBP_bac_6   1 nplpdlilsfdkdflekfieeglfqpldpanlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnngsdl 99 
                 n ++d++  ++ +f   ++++g+ qp++p  +++++     e+ kd+dg++++ ++g++ ++ +k+++++  +P+sW++L + +yk  ++ ++++ ++ 
  EGE23789.1 103 NATADIGD-VGASFAPVAVDKGVTQPYKPSTWDQIP-----EWAKDKDGHWVIGYTGAIAFIADKQKVNK--IPTSWDELKRSKYKVTIGDVSTASQAV 193
                 5689***9.***************************.....***************************75..5***********************999 PP

   SBP_bac_6 100 fealllalyk...dfgedgvkkllrnlkanlhpaqmvkaagslesgepavsvvpyffadilpekkkgk..nlkvvwPedGalvspifmlvkkg.kkkel 192
                 + +l+++++    + ++ ++ +++ +l+++ +  + + ++++le+ge  + v++ ++++ l ++++ +  +++vv+P dG++ s ++ +++k+ k++  
  EGE23789.1 194 NGVLAANYALggtEADLTPALDYFTDLAKQKRLGMADPSVANLEKGE--IEVAVVWDFNGLNYRDQINreRFDVVIPSDGSVQSGYATIINKYaKNPHA 290
                 9999999999**7777*******************************..777777777777777766666***************************** PP

   SBP_bac_6 193 akafidfllspevqailakaggvfPvv....t 220
                 a+   +++ls+++q +la+ +   Pv     t
  EGE23789.1 291 AMLTREYILSDKGQLNLARGYA-RPVRidhlT 321
                 *********************8.999654442 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.23   8.3e+02     107     139 ..      35      71 ..      13      87 .. 0.62
   2 !   43.7   5.8   8.2e-15   2.9e-11      19     260 ..      88     312 ..      71     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.23
                 S...---BHHHHHHHHHHHHHH-...SEGG---GGGGG CS
   SBP_bac_8 107 a..edpktwdellaaakklkgkf...glpdpasgwlqa 139
                 a   +  +++el +  +k +g++   g+p+ +++w ++
  EGE23789.1  35 AvaTPQLSVEELIE-KAKSEGRVnsvGMPNTWANWEET 71 
                 24445567777777.55556776777666666666543 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 8.2e-15
                 --SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH-HHHHHTT--TS.----EEEEEEE-EEEEEHHHHHHS.---BHHHHH CS
   SBP_bac_8  19 aasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnlddltdalaavgydgklygvPyasetpyvliynkdllekaedpktwdell 117
                 ++s++ ++k+ a+    +a ++d+    +++++ ++++g++++ +   ++d+++ ++++   dg   +v   ++   ++i +k ++ k   p++wdel+
  EGE23789.1  88 MSSAQEIAKFLAEK--ENA-TADIGDVGASFAPVAVDKGVTQPYKP-STWDQIPEWAKD--KDG--HWVIGYTGA-IAFIADKQKVNK--IPTSWDELK 175
                 55566666666653..344.67889999999999999999999775.789999999996..566..667777787.8**********6..********* PP

                 HHHHHHH...HH-SEGG---GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-.EE-S..--SSTTTTTSBSEEEE-TTHHHHHH-T.T.TSE CS
   SBP_bac_8 118 aaakklk...gkfglpdpasgwlqaallakdgksldddggkdglkealellkklkdngk.tydtgadavsefanGevaftingswdiaaaqka.g.kkl 210
                     k+k   g + ++ +a + ++aa +a +g         ++l  al+++++l +++   +   +  v+++ +Ge+  ++ ++ +  +++++ + +++
  EGE23789.1 176 R--SKYKvtiGDVSTASQAVNGVLAANYA-LGGTE------ADLTPALDYFTDLAKQKRlGM--ADPSVANLEKGEIEVAVVWDFNGLNYRDQiNrERF 263
                 *..77754467776666666666777777.66555......456999********9986344..3456789***********9999888888844579* PP

                 EEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH- CS
   SBP_bac_8 211 gaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektg 260
                  +++p +gs++ g  ++++k akn+  aA+   ++++s+ +q +la ++ 
  EGE23789.1 264 DVVIPSDGSVQSGYATIINKYAKNPH-AAMLTREYILSDKGQLNLARGYA 312
                 **************************.699999**********9998444 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.62   2.2e+03      91     128 ..      63     102 ..      58     151 .. 0.50
   2 !   27.7   0.3   5.6e-10     2e-06      78     221 ..     152     304 ..      88     311 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.62
                 T---SHHHHHHS.S--EEEE--T-.TTTTHH.HHHHGGG- CS
  SBP_bac_11  91 kkikgwadLlkp.glklavadPtt.spsGlaalalleaag 128
                 ++  +w++ +++ +++++++   t  +s++ + ++l+  +
  EGE23789.1  63 NTWANWEETWNDiNTEFGLSHQDTdMSSAQEIAKFLAEKE 102
                 5555666666654555666555553333333334443222 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 5.6e-10
                 EEEEEEEESTT-TT-.--SHHHHHHSS--EEEE--T-TTTTHH.HHHHG.GG--........HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEH CS
  SBP_bac_11  78 ssplviavpkgnpkk.ikgwadLlkpglklavadPttspsGlaalalle.aaga........qellkalekkvvklgessrqlltaveageadagivye 166
                 +  +++++ k + +k +++w++L++ + k+ + d +t++++ + + +++ a+g+         ++++ l+k+ + lg  +++ ++ +e ge+++++v+ 
  EGE23789.1 152 TGAIAFIADKQKVNKiPTSWDELKRSKYKVTIGDVSTASQAVNGVLAANyALGGteadltpaLDYFTDLAKQKR-LGM-ADPSVANLEKGEIEVAVVWD 248
                 4557788877775542678****************999999965544442555566677777456666666665.444.5788899************7 PP

                 HHH.H...H.STTSSEEEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHH CS
  SBP_bac_11 167 sea.kaa.e.ngdkleavylpeglnldpldypaavlkkaakreaAraFlafLrspeaq 221
                  +  +++ + n++++++v +++g +   + y+ ++ k a+++ aA    ++++s+++q
  EGE23789.1 249 FNGlNYRdQiNRERFDVVIPSDGSV--QSGYATIINKYAKNPHAAMLTREYILSDKGQ 304
                 76643334449*************9..4999999999********************9 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.2e-06    0.0045      16     186 ..      68     267 ..      62     293 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-06
                     HHHHHHHHHHHHSSE...EEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEE.........EETT--S..EEEEEEEEETTSS CS
  Phosphonate-bd  16 yqpladyLseelGve...velvvatdyaavvealragqvDiaflgplayvqardqagveplatr.........vrsdGsa..syrsviivradsd 96 
                     +++  + +++e G      +   a+ +a +  + ++ ++Di+ +g++ + +a+d+  ++p   +         +++dG    +y ++i+  ad +
      EGE23789.1  68 WEETWNDINTEFGLShqdTDMSSAQEIAKFLAEKENATADIGDVGASFAPVAVDKGVTQPYKPStwdqipewaKDKDGHWviGYTGAIAFIADKQ 162
                     66666666777755555577777888888888889999***************998778887775556666443356643669999998888864 PP

                     .--....SHHHH..GG-EEEE--TT-TT....TTHHHHHHT.CCCCT--HH.....HHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH CS
  Phosphonate-bd  97 .iq....sledL..kgktiafvspsSts....GylvpaalL.vkeagldpe.....ddfsevfsgshdaavlavlsgdadaaavsadaledlvae 174
                      ++    s+++L     ++++++ s +s    G l+  + L   ea+l+p      d+ ++++ g  d +v+++ +g++++a+v++++  +++++
      EGE23789.1 163 kVNkiptSWDELkrSKYKVTIGDVSTASqavnGVLAANYALgGTEADLTPAldyftDLAKQKRLGMADPSVANLEKGEIEVAVVWDFNGLNYRDQ 257
                     48755557799965333455554443333344999999999434677777798885667777**************************9999876 PP

                     -HHHHTTEEEEE CS
  Phosphonate-bd 175 gpedkdelrvia 186
                       ++++++ v+ 
      EGE23789.1 258 --INRERFDVVI 267
                     ..7888887764 PP

>> TACC_C  Transforming acidic coiled-coil-containing protein (TACC), C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06    0.0052       7      94 ..      27     118 ..      23     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
      TACC_C   7 daalekvkeeveekeeeiqelkkkveelkkenq.emkkivaefektiaqliee....kqkqkelakkeiqkvleekeqlladlnsveksfsdl 94 
                 daa ++ ++ v + +  ++el +k + + + n   m ++ a++e+t +++ +e    +q +  ++ +ei+k l+eke+++ad+ +v  sf+ +
  EGE23789.1  27 DAAEQD-DKAVATPQLSVEELIEKAKSEGRVNSvGMPNTWANWEETWNDINTEfglsHQDTDMSSAQEIAKFLAEKENATADIGDVGASFAPV 118
                 444444.4455666999***999998777665549***********99999975554788888999*********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3091.81
//
Query:       EGE23790.1  [L=496]
Description: exopolyphosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-73  245.6   0.4    1.3e-72  244.6   0.3    1.5  2  Ppx-GppA  Ppx/GppA phosphatase family
      1e-07   32.3   0.4    0.00038   20.8   0.1    3.1  2  FtsA      Cell division protein FtsA
  ------ inclusion threshold ------
      0.076   12.9   0.0       0.18   11.6   0.0    1.6  1  ACT_5     ACT domain


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.6   0.3   2.2e-76   1.3e-72       4     284 ..      25     303 ..      22     304 .. 0.97
   2 ?   -2.8   0.0      0.55   3.3e+03      66      89 ..     328     351 ..     327     351 .. 0.91

  Alignments for each domain:
  == domain 1  score: 244.6 bits;  conditional E-value: 2.2e-76
                 EECTTEEEEEEEEEEE--CCCCCHCCSSC-HHHHHHHHHHHHHHHHHCCCTTGCCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHHHHH CS
    Ppx-GppA   4 rkaagllqivarekrkvrLaeglnesgrlqeeaiertisaLkefaellqkfkvenvrvVATsalRdavNadeFlarvkkevglkveiisgeeEarliyl 102
                 +    +l  +a+  +kv+La gl+e + l+ ++i+r+i++L++fa +l +++ +++rvVAT++lR+avN++eF+ r+++ +++ +eiisg eEarliyl
  EGE23790.1  25 ERHGDQLRRIASMSEKVQLAMGLDECNHLSSAVIDRGIECLTRFAGRLGDVNNSRLRVVATNTLRRAVNSQEFIVRANDILPVHIEIISGREEARLIYL 123
                 444555899999*************************************************************************************** PP

                 HHHHHT---SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCEHHCCCCCCCHCCHHCHH CS
    Ppx-GppA 103 gvvssllekgrglviDiGGGStElvlgeekevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkegewtrlvgtsgtisalae 201
                 gv ++ ++ ++  v+DiGGGStEl++g++ ++   +S+++G+  +t++f+ d+++++  +e a  +++ke+ ++   +kk g    +vg+sgti+++++
  EGE23790.1 124 GVSHTCPSHQQRFVVDIGGGSTELIIGKNLNPILTESTQMGVAGFTQQFFGDGNINALSFEKAIYVAQKEIIKYGSHYKKTG-FEEAVGSSGTIKTIQQ 221
                 ******77777799********************************************************************.**************** PP

                 HHHHCT.SSCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES--HHHHHHHHHHHH CS
    Ppx-GppA 202 ltelhgekgyeitaeeleeliekllqlkkeeelklagvsdeRadvivagalilsavlealeieaviisegalrEGvlyslllk 284
                   ++ g  g eit + +e+l   l+ + + +   +agv+  R+ +++ag++il+a+++++ i+ +++++galrEGv+y++l +
  EGE23790.1 222 AIAGFG-LGDEITLAGVEQLKSSLIACGHIDAIDMAGVKSHRKGIFPAGVAILLAIMRVFGIRLLRYCDGALREGVMYDMLSR 303
                 ******.99***********************************************************************975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.55
                 HHHHSTTHHHHHHHHCCCCSS-EE CS
    Ppx-GppA  66 alRdavNadeFlarvkkevglkve 89 
                 a R a+ a   +++v k +gl++e
  EGE23790.1 328 AKRVAKTAGSLFNQVHKPLGLAIE 351
                 6799999**************997 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00058       3.4       1      19 [.      10      28 ..      10      92 .. 0.84
   2 !   20.8   0.1   6.3e-08   0.00038       2      71 ..     137     236 ..     136     433 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00058
                EEEEE-SSSEEEEEEETTE CS
                xxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedga 19
                a++DiG++++ +a+ae+++
  EGE23790.1 10 AAIDIGSNSIHLAIAERHG 28
                79*************9954 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 6.3e-08
                 EEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHH.......HHHHHT--HHHHHHHHHHH--S--.............EEEEEHHHHH.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxx.......... RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigvggngitkd.......iakalrtaveeAerikikyGsala.............ekeigrkels.......... 70 
                 +vDiG+g+t+++++++ +++ +++ ++g  g+t+         a ++ +a+  A++  ikyGs ++              k+i+ + ++          
  EGE23790.1 137 VVDIGGGSTELIIGKNLNPILTESTQMGVAGFTQQffgdgniNALSFEKAIYVAQKEIIKYGSHYKktgfeeavgssgtIKTIQ-QAIAgfglgdeitl 234
                 8***************************************98788899999999888889***999777766665555433333.22224555544444 PP

                 .G CS
                 .x RF
        FtsA  71 .g 71 
                  g
  EGE23790.1 235 aG 236
                 41 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.1e-05      0.18       5      42 ..     430     467 ..     427     476 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.1e-05
       ACT_5   5 vLeRvlrvvrrrgFevkslnmsttedggtvrieltVes 42 
                 +L R+  v ++ +Fe+++ +++ t d++++++++ ++ 
  EGE23790.1 430 LLLRLSVVANHGRFEISKHQLKLTIDNHHWHVTVKIDR 467
                 799*******************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3388.67
//
Query:       EGE23791.1  [L=348]
Description: two-component system phosphate regulon sensor histidine kinase PhoR [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-23   81.9   0.1    1.2e-22   80.5   0.1    1.7  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      3e-17   62.4   0.1    8.5e-17   61.0   0.1    1.8  1  HisKA        His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
      0.015   15.2   0.1      0.044   13.7   0.1    1.8  1  HATPase_c_5  GHKL domain
      0.024   14.6   0.0      0.058   13.4   0.0    1.6  1  PAS          PAS fold
      0.026   14.5   0.0      0.047   13.7   0.0    1.3  1  HATPase_c_2  Histidine kinase-like ATPase domain
      0.028   14.5   0.0      0.064   13.3   0.0    1.6  1  PAS_8        PAS domain
      0.029   14.2   0.0      0.056   13.3   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.6   9.3e+03      46      72 ..     186     211 ..     181     215 .. 0.62
   2 !   80.5   0.1   4.7e-26   1.2e-22       3     109 ..     229     336 ..     227     339 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.6
                 SSSSTTHHHTGTCS.TTCHHCSTCHTST CS
   HATPase_c  46 GiGipkedlkklfe.kfsqddstkrggg 72 
                  + + + ++++l +  f+q  ++++++ 
  EGE23791.1 186 TKPMAEVNMPRLLMqVFDQ--ASASNQA 211
                 5567777777777767777..3344444 PP

  == domain 2  score: 80.5 bits;  conditional E-value: 4.7e-26
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                 e  L+ +i+nlv Na+k+++++g i++  + +++d+++sv+DnGiGi  e+l +l e+f++ d++++r +ggtGlGl+ivk + ++++ +++++se+g 
  EGE23791.1 229 EAYLYSAIINLVLNAIKYTPSGGMIDIIYEEDDGDVHLSVTDNGIGIGGEHLGRLTERFYRvDSGRSRATGGTGLGLAIVKHVLNKHNARLEISSEEGV 327
                 667999************88**********8779************************************************8888************* PP

                 EEEEEEEEE CS
   HATPase_c 101 Gttftftlp 109
                 G+ f++ +p
  EGE23791.1 328 GSMFRIIFP 336
                 *****9777 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.1   3.3e-20   8.5e-17       1      66 [.     118     183 ..     118     184 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 3.3e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH..HC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaL..kregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 ++++f+ +v+HELrtPL++ilg++e     +++k  +  ++ l+ ++++a r+++l++dlL+lsr+e+
  EGE23791.1 118 MRTDFVGNVSHELRTPLTVILGYLENFtlTDDIK--PAWMRGLKLMHEQAIRMNDLINDLLMLSRLES 183
                 689***********************73355455..99****************************97 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.7e-05     0.044       8      92 ..     234     326 ..     228     333 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
  HATPase_c_5   8 vilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg..........ekkkle...sskskkeehGiGlksireivkkykgnlsieaedg 92 
                  + + nl  NAi     ++ +  +I++  +e+++++ +s++ +  g          e + ++    +++ ++  G+Gl  ++++++k++  l+i+ e+g
   EGE23791.1 234 SAIINLVLNAIK---YTP-SGGMIDIIYEEDDGDVHLSVTDNGIGiggehlgrltE-RFYRvdsGRSRATGGTGLGLAIVKHVLNKHNARLEISSEEG 326
                  555556555554...444.3668999999999998888876644446665665531.222232244788999*********************99987 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.2e-05     0.058       5      40 ..      10      46 ..       7      74 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
                HHHHHSSSEEEEEE.TTSBEEEECHHHHHHHSSTHHH CS
         PAS  5 aileslpdpifvvD.edgrilyvNaaaeellGlsree 40
                 ++e+l+d+i+v D  + +i y+N+aa +ll ++ ++
  EGE23791.1 10 LLVENLTDGIVVMDmSRLIIEYINPAAKSLLAITSND 46
                589***********99999************998766 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.8e-05     0.047      40     112 ..     240     315 ..     228     334 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
  HATPase_c_2  40 ctNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep........keslkegGrGlalikglvDev 112
                  + Na+++       g + + +e d++ ++++v+D+G g   e+l + te           +      G+Gla++k++ ++ 
   EGE23791.1 240 VLNAIKYTPS---GGMIDIIYEEDDGDVHLSVTDNGIGIGGEHLGRLTE--RfyrvdsgrSRATGGTGLGLAIVKHVLNKH 315
                  4455555554...68899********************88887766555..345999988888889999******998876 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.5e-05     0.064       6      35 ..      11      41 ..       2      56 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
       PAS_8  6 lfesspdgiavvdlgd.rivdvNqaalellG 35
                l+e++ dgi+v d  +  i ++N+aa  ll 
  EGE23791.1 11 LVENLTDGIVVMDMSRlIIEYINPAAKSLLA 41
                79**********944447999*****99985 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.2e-05     0.056       4      81 ..     233     307 ..     230     346 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
  HATPase_c_3   4 ekAlaelvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslGkkGiGlklAs 81 
                  ++A++ lv N++    +   ++i +++++g +  ++++D+G G+  e l +   r+ + +      s+ +G  G+Gl  A+
   EGE23791.1 233 YSAIINLVLNAIKytPSGGMIDIIYEEDDG-DVHLSVTDNGIGIGGEHLGRLTeRFYRVDSG---RSRATGGTGLGL--AI 307
                  57999999999874466677*******985.899**************99955378888877...578888888884..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2641.38
//
Query:       EGE23792.1  [L=230]
Description: two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-26   93.0   0.1    2.5e-26   92.1   0.1    1.5  1  Response_reg  Response regulator receiver domain
      9e-25   86.6   0.0    1.7e-24   85.7   0.0    1.5  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.1   2.7e-30   2.5e-26       1     111 [.       5     117 ..       5     118 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 2.7e-30
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSS.SEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpg.mdGlellkeireed..pelpviiltahseeedavealkaga 94 
                   +l+v+D+p++ el++  l+ +++ +v +a d + a+  +  ek+dlillD++mp+  +G+++++++++++   ++p+i+lta++ee+++v +l+ag+
    EGE23792.1   5 ILVVEDEPAINELIAGTLDLSDF-DVVQAYDTQGAYVAVVDEKPDLILLDWMMPHgESGIDFARRLKKNPatADIPIIMLTAKGEEDNKVYGLDAGV 100
                   8**********************.8889999999999999999***********989*************8889*********************** PP

                   SEEEESSG-HHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkal 111
                   dd+++Kpf+ +eL++++
    EGE23792.1 101 DDYITKPFSTRELISRV 117
                   **************998 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   1.9e-28   1.7e-24       1      77 []     151     226 ..     151     226 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 1.9e-28
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  g+e++++ +e++lL +++ +++r ++r+++l++vwg + ++d+rt+dvhi+rLRk L++ ++++ lI+tvrg GYr+
   EGE23792.1 151 GTEITMSITEYRLLCFFVTHSERAYTRAQILDAVWGGNVYIDERTIDVHIRRLRKLLAPYGADT-LIQTVRGTGYRF 226
                  6899*******************************************************99777.**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1692.15
//
Query:       EGE23793.1  [L=268]
Description: phosphate transporter ATP-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-33  115.4   0.0    3.8e-33  114.9   0.0    1.2  1  ABC_tran      ABC transporter
    5.1e-09   35.9   0.0    8.3e-09   35.2   0.0    1.3  1  SMC_N         RecF/RecN/SMC N terminal domain
    6.8e-09   35.9   0.2    0.00085   19.2   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      6e-06   26.2   0.0    9.3e-06   25.6   0.0    1.3  1  AAA_15        AAA ATPase domain
    9.5e-06   25.6   0.0    1.8e-05   24.7   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
    1.1e-05   25.7   0.0    8.3e-05   22.9   0.0    2.2  1  AAA_22        AAA domain
    8.8e-05   23.1   0.1    0.00014   22.5   0.1    1.5  1  AAA_23        AAA domain
     0.0013   18.5   0.0     0.0025   17.5   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
     0.0022   18.4   0.1      0.011   16.1   0.1    2.1  1  AAA_16        AAA ATPase domain
     0.0032   17.4   0.0     0.0056   16.6   0.0    1.3  1  Rad17         Rad17 P-loop domain
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.024   14.8   0.0    1.6  1  AAA_33        AAA domain
      0.016   15.5   0.0      0.028   14.7   0.0    1.4  1  AAA_28        AAA domain
      0.031   14.3   0.0        0.2   11.6   0.0    2.1  2  AAA_5         AAA domain (dynein-related subfamily)
      0.031   14.0   0.0       0.15   11.7   0.0    1.9  2  AAA_30        AAA domain
      0.032   14.8   0.1       0.08   13.5   0.1    1.8  1  AAA_18        AAA domain
      0.039   12.7   0.0        2.1    7.1   0.0    2.2  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.073   12.7   0.0       0.15   11.7   0.0    1.4  1  Relaxase      Relaxase/Mobilisation nuclease domain
      0.093   13.1   0.1       0.27   11.6   0.0    1.8  2  RNA_helicase  RNA helicase
       0.14   12.6   0.0       0.51   10.8   0.0    2.0  1  AAA           ATPase family associated with various cellular 
       0.15   11.7   0.0       0.46   10.0   0.0    1.7  2  AAA_25        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   4.2e-36   3.8e-33       1     137 []      37     193 ..      37     193 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 4.2e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren............. 79 
                 lkn++l++   +++a++G++G+GKStLl++l ++++      + Gei ld++++ +   + + lr+++g+++q+p+ f  + +++n             
  EGE23793.1  37 LKNINLDILDKKVTAFIGPSGCGKSTLLRTLNRMYDLysgmrATGEIILDNQNILDsrVDVNLLRARVGMVFQKPTPFAMS-IYDNvafgvklyenlsk 134
                 79**********************************98999999**********99889999*****************99.99999***********9 PP

                 .HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  e d+++e al+k  l +  ++++k+s+ sLSgGq+qr+++ar+++++p++lllDEpt+
  EGE23793.1 135 sELDDRVEWALQKSALWNEVKDKLKKSGLSLSGGQQQRLCIARSVATRPEVLLLDEPTS 193
                 9999*****************************************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   9.3e-12   8.3e-09      21     205 ..      44     229 ..      29     241 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 9.3e-12
                 ETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--......BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  21 pfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk......skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseyki 113
                  ++k++ta +Gp G+GKs ll  +  +     ++ +r++    +i        s+   ++ +a+v ++f+++   +    ++v   ++++++ + + ++
  EGE23793.1  44 ILDKKVTAFIGPSGCGKSTLLRTLNRMYDL--YSGMRATGE--IILDnqnildSRVDVNLLRARVGMVFQKPTPFAMSIYDNVAFGVKLYENLS-KSEL 137
                 36899*******************777664..445777532..222212343358899999************998888888888888887765.4444 PP

                 TT.......EEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 114 ng.......kevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 ++       k++  +ev++ l+++g+s   LSgG+++ + +a  +A+   +p  + llDe  +aLD   + ++ el++  +++  + +++++ ++  ++
  EGE23793.1 138 DDrvewalqKSALWNEVKDKLKKSGLS---LSGGQQQRLCIARSVAT---RP-EVLLLDEPTSALDPISTGAIEELIHDLKQDYTIAIVTHNMQQAVRC 229
                 331111111445559999999999996...9*****97766666553...44.4679**************************9999999998876655 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   9.5e-07   0.00085       1      25 [.      49      73 ..      49      98 .. 0.77
   2 !   14.3   0.0   2.9e-05     0.026     237     298 ..     165     222 ..     147     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.5e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl 25
                ++++iGp g+GKS+LL++l  + +l
  EGE23793.1 49 VTAFIGPSGCGKSTLLRTLNRMYDL 73
                699****************999775 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.9e-05
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 lS G+++ l+++ +++ ++    +ll+DEp + L+P  +  + el+ +l++ +  + ++TH+
  EGE23793.1 165 LSGGQQQRLCIARSVATRP---EVLLLDEPTSALDPISTGAIEELIHDLKQ-DYTIAIVTHN 222
                 6888888888888888888...9*************666666677766666.6889999997 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     1e-08   9.3e-06      11      50 ..      34      74 ..      32     165 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1e-08
      AAA_15 11 FRslkdveidlsee.ltvliGkNnsGKSsilealdlFlnnk 50
                +++lk++ +d+ ++ +t +iG+ ++GKS++l+ l+ + +  
  EGE23793.1 34 YKALKNINLDILDKkVTAFIGPSGCGKSTLLRTLNRMYDLY 74
                9********987667*******************9998854 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     2e-08   1.8e-05      71     122 ..      18      70 ..       5      87 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2e-08
                  HHHHTTSEEEE--TTTHTTHHHHH.HHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  71 elealgyevllvsaktkegleelk.ellkdktsvlvGqSGvGKStLinallpe 122
                  + ++++++ l     + ++l++++ + l++k+++++G+SG GKStL+ +l+  
   EGE23793.1  18 TAAKVQVRNLDFYYGDYKALKNINlDILDKKVTAFIGPSGCGKSTLLRTLNRM 70 
                  444444444444445556777776245677******************99865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   9.3e-08   8.3e-05       5      90 ..      47     149 ..      44     228 .. 0.59

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 9.3e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee......................erpevvfvtlpsst...sskdllrellral..glelkaerlsse 76 
                 +++++ +G+sG+GK+tllr+l + +d ++  +                       +          +++   +++ ++  +  ++  g++l + +ls++
  EGE23793.1  47 KKVTAFIGPSGCGKSTLLRTLNRMYDLYSGMRAtgeiildnqnildsrvdvnllrA---------RVGMvfqKPTPFAMSIYDNVafGVKLYE-NLSKS 135
                 78899********************9887766688889888888884444444332.........3333334343333333332200222333.44555 PP

      AAA_22  77 ellealeqalrara 90 
                 el +++e al++ a
  EGE23793.1 136 ELDDRVEWALQKSA 149
                 55555555554443 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.5e-07   0.00014      11      40 ..      38      68 ..      21     175 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.5e-07
      AAA_23 11 rdqeidF...skgltlItGpNGaGKTTildAik 40
                +  +i++   +k++t+++Gp G+GK+T+l+ + 
  EGE23793.1 38 K--NINLdilDKKVTAFIGPSGCGKSTLLRTLN 68
                3..4666669*******************9887 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.8e-06    0.0025      17      39 ..      40      64 ..      28      70 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.8e-06
      AAA_29 17 ieidlkg..atlltGpsGsGKSTll 39
                i++d  +  +t ++GpsG GKSTll
  EGE23793.1 40 INLDILDkkVTAFIGPSGCGKSTLL 64
                4444444459**************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.2e-05     0.011      26      46 ..      49      69 ..      36     220 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_16 26 lvllsGesGvGKsslvrellr 46
                ++ ++G+sG+GKs+l+r+l r
  EGE23793.1 49 VTAFIGPSGCGKSTLLRTLNR 69
                56789*************986 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.2e-06    0.0056      34      68 ..      36      70 ..      17      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.2e-06
       Rad17 34 wlkadvLesrkkriLLisGPsGCgkstvvkvLske 68
                +lk   L+   k++    GPsGCgkst ++ L + 
  EGE23793.1 36 ALKNINLDILDKKVTAFIGPSGCGKSTLLRTLNRM 70
                56666777778889999*************99876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.7e-05     0.024       1      20 [.      49      68 ..      49     112 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.7e-05
      AAA_33  1 lvllvGlpGsGKstlaerll 20
                ++ ++G++G+GKstl++ l 
  EGE23793.1 49 VTAFIGPSGCGKSTLLRTLN 68
                5689*************983 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.1e-05     0.028       3      23 ..      51      76 ..      49      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.1e-05
      AAA_28  3 vitGgestGKTtlleaLaar.....g 23
                +++G++++GK+tll+ L+++     g
  EGE23793.1 51 AFIGPSGCGKSTLLRTLNRMydlysG 76
                79***************987544444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00023       0.2       4      23 ..      52      71 ..      50      91 .. 0.85
   2 ?    0.0   0.0      0.87   7.8e+02      30      73 ..     126     190 ..     115     213 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00023
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                 +Gp+G+gKs+l + l +++
  EGE23793.1 52 FIGPSGCGKSTLLRTLNRMY 71
                59**************9987 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.87
                 EE--TT--HHHHH--B--.........--------..........................G-SEEEEES CS
       AAA_5  30 vqltrdtteedlkgrreikngttslvdsplvraar..........................egeilvlDE 73 
                 v l++++++++l  r+e      +l++s+l ++++                          ++e+l+lDE
  EGE23793.1 126 VKLYENLSKSELDDRVEW-----ALQKSALWNEVKdklkksglslsggqqqrlciarsvatRPEVLLLDE 190
                 667777777777777776.....44444444444444444445555556666666666666777777777 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017      0.15      18      44 ..      47      73 ..      41      84 .. 0.84
   2 ?   -0.5   0.0      0.94   8.4e+02      90     127 ..     184     224 ..     145     257 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
      AAA_30 18 drvavltGpAGtGKttalkalreawea 44
                ++v++  Gp G GK+t+l++l+++++ 
  EGE23793.1 47 KKVTAFIGPSGCGKSTLLRTLNRMYDL 73
                459999***************999875 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.94
      AAA_30  90 tllivDEagmv....dtkqlaallkaaekagakvilvGDerQ 127
                 ++l+ DE   +    +t  +++l+  +++ + ++ +v  + Q
  EGE23793.1 184 EVLLLDEPTSAldpiSTGAIEELIHDLKQ-DYTIAIVTHNMQ 224
                 66666665554455555555555555555.445544444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   8.9e-05      0.08       4      25 ..      53      77 ..      51     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.9e-05
      AAA_18  4 tGtpGvGKttlakeLskrlgf...g 25
                 G++G+GK+tl + L+++  +    
  EGE23793.1 53 IGPSGCGKSTLLRTLNRMYDLysgM 77
                7**************9984224441 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0023       2.1     242     266 ..      45      69 ..      37      76 .. 0.88
   2 ?    3.7   0.0     0.025        22     324     353 ..     166     195 ..     154     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0023
                 E-SSEEEEEE-TTSSHHHHHHHHHH CS
  ABC_ATPase 242 ipkGvtlIvGggfhGKsTLLeAlek 266
                 + k+vt+ +G+   GKsTLL+ l++
  EGE23793.1  45 LDKKVTAFIGPSGCGKSTLLRTLNR 69 
                 5689******************986 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.025
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAt 353
                 SG   q   i++++  + ++lL+DE tsA 
  EGE23793.1 166 SGGQQQRLCIARSVATRPEVLLLDEPTSAL 195
                 888999999*******************96 PP

>> Relaxase  Relaxase/Mobilisation nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.15     167     207 ..     131     171 ..     118     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
    Relaxase 167 ssykeeirqalkkalenasdfedlkealkekglelrrktgk 207
                  + k+e++ +++ al+++  ++++k++lk+ gl+l+  +++
  EGE23793.1 131 NLSKSELDDRVEWALQKSALWNEVKDKLKKSGLSLSGGQQQ 171
                 67799******************************954444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0003      0.27       3      21 ..      52      70 ..      50      90 .. 0.80
   2 ?   -2.6   0.0       8.2   7.3e+03      77      81 ..     227     231 ..     204     256 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0003
  RNA_helicase  3 lyGpsgeGKStlakeLaka 21
                  + Gpsg+GKStl ++L + 
    EGE23793.1 52 FIGPSGCGKSTLLRTLNRM 70
                  78***********997664 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.2
  RNA_helicase  77 vsstp 81 
                   v +  
    EGE23793.1 227 VRCSD 231
                   22222 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00056      0.51       3      22 ..      52      71 ..      50     200 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00056
                EESSTTSSHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakel 22
                ++Gp G+GK++l + + +  
  EGE23793.1 52 FIGPSGCGKSTLLRTLNRMY 71
                89***********9987775 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00051      0.46      32      50 ..      46      64 ..      36      89 .. 0.82
   2 ?   -1.5   0.0       1.8   1.6e+03     121     140 ..     194     213 ..     134     223 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00051
      AAA_25 32 agelallaGapgtGKttla 50
                 +++++++G++g+GK+tl+
  EGE23793.1 46 DKKVTAFIGPSGCGKSTLL 64
                6899*************97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
      AAA_25 121 rggtlltadvdaleaaieev 140
                 + +++ t+++++l+ ++++ 
  EGE23793.1 194 ALDPISTGAIEELIHDLKQD 213
                 23344677777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 1854.61
//
Query:       EGE23794.1  [L=290]
Description: phosphate ABC transporter, permease protein PstA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-27   94.5  26.4    8.2e-26   90.9  15.1    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   3.5   3.9e-05      0.69      10      59 ..      17      86 ..      12      97 .. 0.76
   2 !   90.9  15.1   4.6e-30   8.2e-26       1     175 [.      98     285 ..      94     288 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 3.9e-05
  BPD_transp_1 10 lnrnkkldkllrpliivllslPsfvlaillvlvf....................vilsilghlilpviil 59
                  ++r++ ++++ ++l+ v +++  f+la +lv +f                    ++ ++l ++i + i++
    EGE23794.1 17 YHRRRAVSRFAMGLTVVAMTFGLFWLAWILVTLFaqgiqglmsmpvfgmdtpppMVEGGLRNAIVGSIMI 86
                  6899***************************888887777777777666666665555555555554444 PP

  == domain 2  score: 90.9 bits;  conditional E-value: 4.6e-30
  BPD_transp_1   1 gillGilaa.lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   gil+G+++a + ++++l ++ r++ ++lls Ps+v++++++++  + ++ g++ ++++++l++  +p+v+++++++l  +p +l+ea +alG ++ +
    EGE23794.1  98 GILTGVYLAeFDQGGWLGRATRFMNDILLSAPSIVIGLFVFAL--MVQGRGFSGWAGVVALAVIVIPVVVRTTESMLLLVPNNLREAGYALGTPKYK 192
                   788899999**************************99999864..889************************************************* PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..................nggvlalviavlllnlvadil 175
                   ++ +++l++a+  +itg++laf+++ g+++ l+f++    l+++ +++ +++ +++                    ++++l +++avllln++a++l
    EGE23794.1 193 LVSHITLKSAKAGVITGVLLAFARIAGETAPLLFTA----LNNQYFSTDMSQAMANLPntiyqfamspydnwhalaWAAALLITFAVLLLNIIARAL 285
                   ************************************....7777777777777776667777899999****9999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2134.55
//
Query:       EGE23795.1  [L=320]
Description: phosphate transporter permease subunit PstC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-13   50.4  21.9    2.1e-13   50.4  21.9    2.4  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.017   15.4   8.7        2.9    8.3   0.6    4.0  3  Htr2          Htr2 transmembrane domain


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   6.3         1   9.1e+03     121     168 ..      36      91 ..      18     104 .. 0.48
   2 !   50.4  21.9   2.4e-17   2.1e-13       6     175 ..     101     306 ..      96     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1
  BPD_transp_1 121 llggavlleflgswpG...lgtllleailgydyseis.....nggvlalviavlll 168
                    lgg +l + +g+ p    +g+ + +++++ +++        + g++++ i+ +++
    EGE23795.1  36 TLGGIMLSLVFGAIPSireFGLNFYTSSNWDPVAGQFgalapIYGTIVTSIIAVVI 91 
                   34455555555544444444444444444444443335555533333333333333 PP

  == domain 2  score: 50.4 bits;  conditional E-value: 2.4e-17
  BPD_transp_1   6 ilaalnrnkkldkllrpliivllslPsfvlaillvlvf.........................vilsilghlilpviillllsaapyvrlirraalr 77 
                   +++     ++l+k l + i++l ++Ps++ ++  ++vf                         ++   +g + + + ++l+++++p++  ++r+++ 
    EGE23795.1 101 VFLTELCPNFLKKPLGIAIELLAGIPSIIYGMWGLFVFapwfgdtvqpwlinhlaglpiigqmFVGAPIGIGLFTAGLVLAIMIIPFIAATMRDVFL 197
                   5555555689999999*************99999999999**********************8888888889999********************** PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis............nggvlalv 162
                   ++p+ l+e a+ +Ga++w+++ kvvlP ++  ++ glil +g++lg+++++ fl++++ ++  +  +++g  +++++              ++l l+
    EGE23795.1 198 VVPDLLKESAYGMGATTWEVVTKVVLPYTKAGVVGGLILGLGRALGETMAVTFLIGNT-FNINTSLFTSGVSITSALanefaeassemhLSSLLHLG 293
                   *******************************************************776.777777777777777666889999999*9955555555 PP

  BPD_transp_1 163 iavlllnlvadil 175
                   ++++++++++   
    EGE23795.1 294 LILFVISFIVLSA 306
                   5555555555443 PP

>> Htr2  Htr2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0028        25      30      56 ..      19      45 ..       9      49 .. 0.89
   2 ?    8.3   0.6   0.00032       2.9       3      20 ..      86     103 ..      84     107 .. 0.90
   3 ?    4.7   0.2    0.0041        37      21      53 ..     268     301 ..     245     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0028
        Htr2 30 DaaavgeaavsaiLGLivLtvinLGLv 56
                D a v     sa+L L+ L +i L Lv
  EGE23795.1 19 DGAFVWTTKLSALLVLLTLGGIMLSLV 45
                7888999999***************99 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00032
        Htr2   3 iFalviavtvaFGgaaYl 20 
                 i a+viav v FG a++l
  EGE23795.1  86 IIAVVIAVPVSFGIAVFL 103
                 89*************997 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0041
        Htr2  21 evtaalasGDaaavgeaavsaiLGL.ivLtvinL 53 
                  +t ala+  a a  e   s++L L ++L vi  
  EGE23795.1 268 SITSALANEFAEASSEMHLSSLLHLgLILFVISF 301
                 699*****999**********9877677888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2378.25
//
Query:       EGE23796.1  [L=379]
Description: phosphate ABC transporter substrate binding protein PstS [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-64  218.7  11.9    1.6e-64  218.3  11.9    1.1  1  PBP_like_2  PBP superfamily domain
    2.2e-09   36.7   0.3    1.1e-08   34.5   0.1    2.1  2  PBP_like    PBP superfamily domain


Domain annotation for each model (and alignments):
>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.3  11.9   1.8e-68   1.6e-64      11     281 ..      46     340 ..      26     341 .. 0.89

  Alignments for each domain:
  == domain 1  score: 218.3 bits;  conditional E-value: 1.8e-68
  PBP_like_2  11 e..........ifgaGsttpapalrkladafekaapgakvnyastGSgagikalrngdvdfagsdrplteseiaagwaangaggliqvpvaigaialvv 99 
                            i+gaG+++p+p++ k+  +f++a +  +vny+s GS++gik++ +++vdf++sd+plt +e+ +      a +liq+p +ig+++ vv
  EGE23796.1  46 ApaameqvainITGAGASFPQPIYAKWSADFKEA-TSGQVNYQSIGSSGGIKQIIAKTVDFGASDAPLTVDEL-N------AENLIQFPTVIGGVVPVV 136
                 14445556666****************999****.6778********************************99.3......589*************** PP

  PBP_like_2 100 nkd....nplnlsreaLakIfsgkItnWnd........vlglpadgpIkvvhrsdgsgttflfstalaeq...............gpwtasgigasgse 171
                 n +    + l+l+ e+La+I+ gk+t+Wnd         l+lp d++I+ v+rsdgsgttf+f+++l+++               +p+ +sg + +g+e
  EGE23796.1 137 NIEgieaGALKLDGETLANIYLGKVTKWNDpaivalnpDLTLP-DADITTVFRSDGSGTTFNFTDYLNKVstdwagsvgvdkaikWPTASSGAAGKGNE 234
                 *888**99999**************************988888.************************99*************99999999999999** PP

  PBP_like_2 172 gvasavsn.ngaigyvsvaywlavkgysladvtngagkfvlptaataasalkvakias...nplawslqpveeniadgayPlsrftyiivyqpyayhgn 266
                 gvas+vs  ++ igyv++ay++++ g+s+++++n+agkfv+p+a ++a+a  + ++++   +      q + ++ ++ga+P+ ++t+iiv++++ + ++
  EGE23796.1 235 GVASYVSRiKNSIGYVEYAYAKQN-GMSHVALKNAAGKFVQPSADSFAAAGDI-DWSAapgF-----NQVLTNSETAGAWPIAAATFIIVHKNPEN-PE 325
                 ******666***************.******************9999887766.88776543.....4556666679***************8866.58 PP

  PBP_like_2 267 naalakaFldyllsd 281
                 + a++  F+d+++++
  EGE23796.1 326 QVAGVLRFFDWAYTN 340
                 8************86 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1   1.2e-12   1.1e-08      10     178 ..      81     277 ..      74     285 .. 0.79
   2 ?   -0.7   0.0      0.07   6.3e+02     146     172 ..     335     359 ..     289     362 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.2e-12
                 TCEEEEEES-HHHHHHHHHTTS-SEEEESS---CCCHHCCCCCEEE...EEEEEEEEE-CC-HCHCCCCHCCHHH......S--BGGGC.......... CS
    PBP_like  10 gvrvavanvGsggGlkalrageadiagshlldketeeynapalrka...ldgievvlvnlarreqglvvakgnpk......kitnwkdl.......... 89 
                 + +v+++ +Gs+gG+k++ a+++d ++s+ + +  +e na+ l +    + g  v +vn    e+g +   g+ +      k+t+w+d           
  EGE23796.1  81 SGQVNYQSIGSSGGIKQIIAKTVDFGASDAPLTV-DELNAENLIQFptvIGG-VVPVVNIEGIEAGALKLDGETLaniylgKVTKWNDPaivalnpdlt 177
                 45799**************************984.47777766544110444.567788888899***9999999666666699999855567787778 PP

                 .-S-B-EEEEE-TTSHHHHHHHHHHC-CEECT.............E-SSTTSEEESSHHHHHCCHCCETTCCECCCGG-HCCCCCCECTTCE-EEEEEE CS
    PBP_like  90 .adaplrlvnRetGSGtrdlfdellkkegisk.............ssikgyaqearshlavaaaVaagradvgvgieavaeelkgldfvplaeerydlv 174
                  +da+++ v R  GSGt   f++ l+k   +               + +g  +  + +  va++V++ +  +g+   a a++ +g + v l+  +  +v
  EGE23796.1 178 lPDADITTVFRSDGSGTTFNFTDYLNKVSTDWagsvgvdkaikwpTASSG--AAGKGNEGVASYVSRIKNSIGYVEYAYAKQ-NGMSHVALKNAAGKFV 273
                 899**********************9986666777788878887755555..356888889999999999999999999977.7999999988777777 PP

                 EECT CS
    PBP_like 175 vrke 178
                  + +
  EGE23796.1 274 QPSA 277
                 6665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.07
                 CCECCCGG-HCCCCCCECTTCE-EEEE CS
    PBP_like 146 dvgvgieavaeelkgldfvplaeeryd 172
                 d++++  + a  + +ld+vp+++ + +
  EGE23796.1 335 DWAYTNGDQA--ALDLDYVPFSDKAVE 359
                 6777777777..349999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2835.02
//
Query:       EGE23797.1  [L=275]
Description: M48 family zinc metallopeptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-36  123.8   0.2    9.7e-36  123.4   0.2    1.2  1  Peptidase_M48    Peptidase family M48
  ------ inclusion threshold ------
      0.095   12.9   0.0       0.19   12.0   0.0    1.5  1  Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.2   1.1e-39   9.7e-36       4     195 ..      77     260 ..      74     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 1.1e-39
                    SSHHHHHHHHHHHHTT-....-E.....EEEEEE-GGGT-EEEEESSS-EEEEEEHHHH.-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxx..xxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   4 eaelkevveelakeagl..pkpl.....tkvyvvnspkrNAFalgggknkrivltdgLl.kqllseeelaaVlGHElGHikhrhsvvslivsllas 91 
                     ++l+++ ++l+ ++ +  p        +kv  + ++++NA++++ g   +iv+++g++    l+++e+aaV+GHE++H+ ++hs++++++    +
     EGE23797.1  77 VRRLHRIANRLIPQTAVlrP--DatrwdWKVHAITDNQINAYVMPSG---KIVFYTGIIeRLRLTDAEIAAVMGHEMAHALREHSREKASRHIATQ 167
                    689************99554..344888*******************...*********33568******************************** PP

                    HHHHHHHHHHTT-SHHHHHTT--S---HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHHHHS-SS--HHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  92 illllglallisraeedaagafldalavliglliillflalSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrsellstHPplle 187
                     +l +++ +l+ + ++++  + +++l+           l+ SR++E +AD++g+el++ra+++++a+i+l+++++++  +  ++  +lstHP++++
     EGE23797.1 168 GVLSIAVNALGLSGGQAQLVGLAGRLGLD---------LPHSRTQEAEADKIGIELMARAGYDPNAAITLWQKMQSAGGNGVPQ--FLSTHPSSTN 252
                    ******98888887777777777666665.........59******************************************96..********** PP

                    HHHHHHH- CS
                    xxxxxxxx RF
  Peptidase_M48 188 Riqalkel 195
                    Ri++lk+l
     EGE23797.1 253 RIANLKAL 260
                    *****975 PP

>> Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05      0.19       3      53 ..      76     133 ..      74     169 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
  Gluconate_2-dh3   3 qaallaaladrIiPstdt...gpgakeagvaafidrqladaplppeqeayrkg....l 53 
                      q++ l+++a+r+iP+t     + ++ + +v+a  d+q++ + +p+ +  +  g    l
       EGE23797.1  76 QVRRLHRIANRLIPQTAVlrpDATRWDWKVHAITDNQINAYVMPSGKIVFYTGiierL 133
                      8899***********76585556666889***********999998877777754443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2061.23
//
Query:       EGE23798.1  [L=106]
Description: transcriptional regulator protein BolA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-24   84.0   0.2    8.5e-24   83.6   0.2    1.1  1  BolA      BolA-like protein


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.2   4.7e-28   8.5e-24       3      76 .]      14      89 ..      13      89 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 4.7e-28
        BolA  3 ealkpehlevedeShkhaghaeaggetHFkvvivseaFegkslvarhRlvyalLkeelakg...iHALslktktpee 76
                +al+p+ l++++eSh+hag   +g+e+HFk+vivs+aFe+++l arh+ vyal +  l+ +   +HAL+++++tp+e
  EGE23798.1 14 QALSPSILSLQNESHMHAGY-FEGKESHFKLVIVSDAFEKQRLAARHQTVYALAQPFLTVNggmVHALAIHAYTPSE 89
                79******************.88***********************************543369***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 775.90
//
Query:       EGE23799.1  [L=569]
Description: sulfate transporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-86  287.9  31.5    1.4e-85  287.3  31.5    1.2  1  Sulfate_transp  Sulfate permease family
    1.9e-13   50.1   0.0    3.4e-13   49.2   0.0    1.4  1  STAS            STAS domain
  ------ inclusion threshold ------
       0.14   12.5   0.0        0.3   11.5   0.0    1.6  1  STAS_2          STAS domain


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.3  31.5   2.4e-89   1.4e-85       3     379 ..      23     400 ..      22     401 .. 0.91

  Alignments for each domain:
  == domain 1  score: 287.3 bits;  conditional E-value: 2.4e-89
  Sulfate_transp   3 gDliaGitvallaiPqalayallaglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakvaeeepekgieiattltllaGviqvl 97 
                     +D++aG+++a+l iPq+l+ya+laglppi+gLy+++ p +vya +G s  +++Gpva+++++++++++   ++ + ++i +a++l++++G i+++
      EGE23799.1  23 SDIPAGLMMAVLVIPQSLGYATLAGLPPIMGLYAAITPVIVYAWIGASSVSSIGPVAITAIMTASALSVY-ATGSLQYISLAIVLAFMVGGILLI 116
                     7******************************************************************966.8999******************** PP

  Sulfate_transp  98 lGllRLgflveflseavlsGfiaGaaivillsqikvllglervskkeslvsvlsslftnlekvnlakvvlgllllvvLlvtkellkklkkl.... 188
                     +Gl+RLg++++f+s+ v sGfi+Gaa+ i++sq+k+++g+    +  sl++ + s+ t+ + ++l++++lg+ +++ L++++++ + +       
      EGE23799.1 117 AGLIRLGWIMQFVSRGVASGFISGAAVLIIFSQLKHIIGIP--LNTDSLINLFLSIYTSTQPIHLPTALLGIGATL-LFIISRYGESIIWGwlpt 208
                     *****************************************..89999*********************9987665.455555555542225555 PP

  Sulfate_transp 189 ...lvipapaelvavivatlvsaifelkreagvkivgeipsglpelslpkvdwsllsallpdalaialvglleaiavsksldkkkgykvdsnkEL 280
                         +   ++ +++v +++ +s+ +   ++ ++  +  +p+glp++ lp+++  +l +llp al ial++++ + ++s + ++++g ++d+nkEL
      EGE23799.1 209 qwrGFGNRFFVILIVAISIWLSHHI-GFEQMQIRLLQPLPTGLPKITLPNFSATTLLDLLPSALLIALIAFISSSTISAQQARIRGESYDANKEL 302
                     4442233344444444455555555.4566777789*********************************************************** PP

  Sulfate_transp 281 vAlGfsNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglLvelkelkklwklskldfl 375
                      +lG++Ni s+lfgg++++g++sr+ +n ++Gakt+l++++ al vll+llv++++l  +P a+Laa+ii+ +++ +++ k+l+++w+l+k+d++
      EGE23799.1 303 GGLGLANITSGLFGGFAVSGGISRTSLNLSVGAKTPLASIICALGVLLILLVFGQYLTGLPYAILAAVIISSVIS-MIDTKTLINAWQLDKSDAI 396
                     ***************************************************************************.9999*************** PP

  Sulfate_transp 376 illa 379
                     ++ +
      EGE23799.1 397 CFGI 400
                     9866 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   5.7e-17   3.4e-13       4     105 ..     454     547 ..     451     558 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 5.7e-17
                 EEECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTTCG CS
        STAS   4 aeeiegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektgff 102
                 a++ +g l lr+d+ ++f+na+s+  +l r  ++++        ++ ++l ++av++iD s++++L  + +++ ++g  + l+ +k+ + + l+++ + 
  EGE23799.1 454 ATTFDGLLLLRIDESLYFGNAQSVHANLMRLSDDTN--------IHDIVLIMTAVNHIDLSAQEMLCAFNQSCIKRGQHLHLAEVKGPMMDILKTSPVI 544
                 6677999***************************97........********************************************99999988777 PP

                 GCC CS
        STAS 103 dev 105
                 + +
  EGE23799.1 545 ENL 547
                 665 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     5e-05       0.3       5      74 ..     467     538 ..     463     541 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5e-05
      STAS_2   5 Geldldtaaelreqlleal.aag.aevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrll 74 
                 + l   +a +++++l ++   +   ++v+ ++ v+ +D++a  +L+a+   + +rg++l l  + + + ++l
  EGE23799.1 467 ESLYFGNAQSVHANLMRLSdDTNiHDIVLIMTAVNHIDLSAQEMLCAFNQSCIKRGQHLHLAEVKGPMMDIL 538
                 5555667778888888877433367888999*******************************9999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4184.64
//
Query:       EGE23800.1  [L=108]
Description: hypothetical protein EA1_08201 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-19   68.4   0.0    5.5e-19   68.3   0.0    1.0  1  DUF442    Putative phosphatase (DUF442)
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.21   11.4   0.0    1.4  1  OST-HTH   OST-HTH/LOTUS domain


Domain annotation for each model (and alignments):
>> DUF442  Putative phosphatase (DUF442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   6.1e-23   5.5e-19      10     104 ..       6     100 ..       1     105 [. 0.95

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 6.1e-23
      DUF442  10 svspqidlddiaelaeaGfksvinnRPDgeepgqpsnaavqeaaeaaglaylfvPvisgeiteddveafqralaeaegpvlayCrsGtRalvlya 104
                 ++  qi++++   la+ Gfks+in R D+e  gqp    + ++a++agl+y+ +P+   +i  ++ +af+  +++a  pv+++C +G+Ra  ly 
  EGE23800.1   6 TLYKQIHPKQCDGLAKLGFKSLINLRFDDEIKGQPKGYDIAQSAKNAGLSYHTLPIGIDDIHLAQAQAFADLINNAPKPVMVFCGTGSRAKRLYQ 100
                 56689****************************************************************************************97 PP

>> OST-HTH  OST-HTH/LOTUS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.4e-05      0.21      29      52 ..       6      30 ..       3      52 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.4e-05
                HHHHHHHSST-S.TCCCTSSSHHHH CS
     OST-HTH 29 slykkkygksfd.prkyGfskLseL 52
                +lyk+ ++k++d   k+Gf++L +L
  EGE23800.1  6 TLYKQIHPKQCDgLAKLGFKSLINL 30
                78********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 906.98
//
Query:       EGE23801.1  [L=242]
Description: ribosomal large subunit pseudouridine synthase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-27   96.3   0.0    2.5e-27   95.9   0.0    1.1  1  PseudoU_synth_2  RNA pseudouridylate synthase
     0.0066   17.0   0.0       0.01   16.4   0.0    1.4  1  Trm112p          Trm112p-like protein


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   2.8e-31   2.5e-27       2     158 ..      38     191 ..      37     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 2.8e-31
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeee..g 93 
                      ++v++KPag+ +  +        + ++  +sr  + + +++l+hRLD +tsGl+++Akssea  + +k+f +r  +K+Y+a+vfg  + +   g
       EGE23801.1  38 IWVLDKPAGLLSVDGR-------MLKVSLQSRLLRINPNIRLIHRLDMDTSGLIIFAKSSEAQTHISKQFIDRIPQKEYQAVVFGTLMIDDkkG 124
                      789**********999.......99999999*****************************************************7766554004 PP

  PseudoU_synth_2  94 aikkkiskdtekqegarrkaeeldgkkavtylkvlksgs....seksakvslveleletGrkhQiRvhl 158
                       ++ ++    e   ++r+ + ++++k+a t+++v++++     +++  +v+ v l+++tGr hQ+Rvh+
       EGE23801.1 125 VVDVPVR--YEPTTKPRHIVDMDWNKRALTHYEVMHHELrcddNGRAYPVTRVSLKPITGRSHQLRVHM 191
                      4555555..59*******************************999***********************9 PP

>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.1e-06      0.01      34      66 ..     134     173 ..      88     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-06
                 -SS----S.......CHHTTEECCCCEEEETTTTEEEEEE CS
     Trm112p  34 pkekpedy.......ellleldieegeLvCpncgraYpIk 66 
                 p +kp ++        +l  +++++ eL C + graYp+ 
  EGE23801.1 134 PTTKPRHIvdmdwnkRALTHYEVMHHELRCDDNGRAYPVT 173
                 45555555888889977888******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1838.32
//
Query:       EGE23802.1  [L=106]
Description: thioredoxin [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-35  120.4   0.0      3e-35  120.3   0.0    1.0  1  Thioredoxin    Thioredoxin
    1.1e-10   41.6   0.0    2.4e-08   34.2   0.0    2.1  2  Thioredoxin_8  Thioredoxin-like
    5.7e-10   39.6   0.0    1.7e-09   38.1   0.0    1.6  1  Thioredoxin_2  Thioredoxin-like domain
    1.2e-07   31.7   0.0    1.6e-07   31.4   0.0    1.1  1  TraF           F plasmid transfer operon protein
    1.3e-06   28.2   0.0    1.5e-06   28.0   0.0    1.1  1  Thioredoxin_9  Thioredoxin
    1.8e-05   24.7   0.0    2.8e-05   24.0   0.0    1.4  1  AhpC-TSA       AhpC/TSA family
    9.3e-05   21.9   0.0    9.3e-05   21.9   0.0    1.1  1  OST3_OST6      OST3 / OST6 family, transporter family
    0.00017   21.7   0.0    0.00024   21.2   0.0    1.2  1  Thioredoxin_7  Thioredoxin-like
    0.00018   21.7   0.0    0.00026   21.2   0.0    1.3  1  Glutaredoxin   Glutaredoxin
     0.0003   20.5   0.0    0.00033   20.4   0.0    1.2  1  Redoxin        Redoxin
    0.00065   19.7   0.0    0.00079   19.4   0.0    1.2  1  Thioredoxin_3  Thioredoxin domain
     0.0033   17.8   0.0     0.0042   17.5   0.0    1.2  1  DUF836         Glutaredoxin-like domain (DUF836)
     0.0036   17.2   0.0     0.0037   17.2   0.0    1.1  1  HyaE           Hydrogenase-1 expression protein HyaE
     0.0046   16.6   0.1      0.027   14.1   0.1    1.9  1  DUF953         Eukaryotic protein of unknown function (DUF953
     0.0056   15.7   0.0     0.0063   15.5   0.0    1.0  1  Phosducin      Phosducin
      0.007   16.5   0.0        1.9    8.6   0.0    2.1  2  Thioredoxin_4  Thioredoxin
  ------ inclusion threshold ------
       0.01   15.6   0.1        1.5    8.6   0.0    2.0  2  DSBA           DSBA-like thioredoxin domain
      0.018   15.0   0.0      0.023   14.6   0.0    1.1  1  Thioredoxin_6  Thioredoxin-like domain
      0.035   14.2   0.0      0.044   13.8   0.0    1.1  1  TrbC_Ftype     Type-F conjugative transfer system pilin assem
      0.038   13.8   0.0      0.042   13.6   0.0    1.0  1  DIM1           Mitosis protein DIM1
      0.061   13.1   0.0      0.077   12.7   0.0    1.2  1  KaiB           KaiB domain


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   3.5e-38     3e-35       2     102 ..       3     103 ..       2     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 3.5e-38
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaa 99 
                  +++ t+++F+++v +++ lvlv+F+A wCg+Cka+aP+le+lae+++++vk++kvdvd+n++ a+++++++iPtl +fkng++v++++g+r+k+++aa
   EGE23802.1   3 IINATDASFDTDVVNSDGLVLVDFWAAWCGPCKAIAPVLEELAEDYQGRVKIVKVDVDANPQSAARFGIRSIPTLFVFKNGERVETVVGGRPKSEFAA 100
                  567899******************************************************************************************99 PP

                  HHH CS
  Thioredoxin 100 flk 102
                   l+
   EGE23802.1 101 LLD 103
                  887 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   2.8e-11   2.4e-08       3      46 ..      21      62 ..      19      67 .. 0.93
   2 ?    6.1   0.0     0.016        14      75      94 ..      66      85 ..      62      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 2.8e-11
                   EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS- CS
  Thioredoxin_8  3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkk 46
                   +vl+ f+a wc pcka+ p l el e+++   +v+iv v +d +
     EGE23802.1 21 LVLVDFWAAWCGPCKAIAPVLEELAEDYQ--GRVKIVKVDVDAN 62
                   69**************************9..**********986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.016
                   TT-S--TT-SEEEEE-TT-B CS
  Thioredoxin_8 75 kkkynvkaiPtlvvldknge 94
                   + ++++ +iPtl+v ++  +
     EGE23802.1 66 AARFGIRSIPTLFVFKNGER 85
                   6789**********987665 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0     2e-12   1.7e-09       8     109 .]      22     102 ..      17     102 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2e-12
  Thioredoxin_2   8 vlvvftdpdCpyCkklkkelkel.ddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgkeivarlpGyvp 101
                    vlv+f++ +C+ Ck++  +l+el +d++ r         ++++ v+++ +++              a ++g+r+ Pt +vf +g+ +v++++G  p
     EGE23802.1  22 VLVDFWAAWCGPCKAIAPVLEELaEDYQGR---------VKIVKVDVDANPQS-------------AARFGIRSIPTlFVFKNGE-RVETVVGGRP 94 
                    89*********************6666555.........66666666666655.............699********55599999.999******* PP

  Thioredoxin_2 102 aeeleall 109
                    + e++all
     EGE23802.1  95 KSEFAALL 102
                    *****997 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.8e-10   1.6e-07     132     204 ..      22      85 ..      15      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.8e-10
        TraF 132 gLlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpksq 204
                  L+ F ++ c+ c+a ap+l+++a++y+  v++V+vd   +p+          aar+g++++P+l++++  ++
  EGE23802.1  22 VLVDFWAAWCGPCKAIAPVLEELAEDYQGRVKIVKVDVDANPQS---------AARFGIRSIPTLFVFKNGER 85 
                 466689999****************************9999764.........56************998844 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.8e-09   1.5e-06      49     120 ..      27      96 ..      10     104 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.8e-09
                    --TT-HHHHHHHHHHHHHHH.H-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-HH CS
  Thioredoxin_9  49 tedwCgDaavnvPvlakiae.lnpnievkillrdenlelmdqyltngaraiPtliildeegeelgvwgerPae 120
                     + wCg + ++ Pvl+++ae ++ ++++  +  d+n++   ++   g r+iPtl++++++ ++ +v g rP+ 
     EGE23802.1  27 WAAWCGPCKAIAPVLEELAEdYQGRVKIVKVDVDANPQSAARF---GIRSIPTLFVFKNGERVETVVGGRPKS 96 
                    579****************636778888888899999999999...89**********999999999999985 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   3.3e-08   2.8e-05      25      73 ..      19      65 ..       5      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 3.3e-08
                TSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHH CS
    AhpC-TSA 25 gkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspesh 73
                +  v++ f+++ wc +C++ +p l++l+e+++   v+++ v vd   ++
  EGE23802.1 19 DGLVLVDFWAA-WCGPCKAIAPVLEELAEDYQ-GRVKIVKVDVDANPQS 65
                4589999****.********************.5699*99999987655 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.1e-07   9.3e-05      46     106 ..      31      84 ..       3     101 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.1e-07
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkk 106
                 C +C+ ++p +e +a+ ++         +  +kvd+d +++  +++g++s+P l++f+  +
  EGE23802.1  31 CGPCKAIAPVLEELAEDYQGR-------VKIVKVDVDANPQSAARFGIRSIPTLFVFKNGE 84 
                 99*************999988.......789**************************9844 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.8e-07   0.00024      20      82 ..      22      81 ..      18      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.8e-07
                   EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE- CS
  Thioredoxin_7 20 vlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvafld 82
                   vlv+f a+wc++C+a++ ++++    ++ +++++  ++vdv+ + ++  ++  + +P++++++
     EGE23802.1 22 VLVDFWAAWCGPCKAIAPVLEEL---AEDYQGRVKIVKVDVDANPQSAARFGIRSIPTLFVFK 81
                   8****************999876...555************98888774555588***99985 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     3e-07   0.00026       6      57 ..      28      83 ..      22      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3e-07
                  STSSHHHHHHHHHHHHTT......GGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEE..TT CS
  Glutaredoxin  6 kptCpyCkkakrlLkelg......vkfeeidvdkdeeireelkelsgvrtvPqvfi..dg 57
                    +C+ Ck++  +L+el       vk+  +dvd++++  +      g+r++P++f+  +g
    EGE23802.1 28 AAWCGPCKAIAPVLEELAedyqgrVKIVKVDVDANPQSAARF----GIRSIPTLFVfkNG 83
                  579***********888888888999*********9999999....*********85455 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.8e-07   0.00033      29      75 ..      20      64 ..       4      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.8e-07
                SEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH CS
     Redoxin 29 kkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf 75
                + v+v f+++ +c++C+a +p le+lae + ++ v++v v +d +++
  EGE23802.1 20 GLVLVDFWAA-WCGPCKAIAPVLEELAEDY-QGRVKIVKVDVDANPQ 64
                4579999999.*****************95.5558888887777776 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.3e-07   0.00079      10      58 ..      31      84 ..      22     103 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 9.3e-07
                   STTCHHHHHHHHHHCHCCTCECEEECC..TTHHHH.HHCT-SSSSEEEC..TTC CS
  Thioredoxin_3 10 CakCpklekavkeaaaekgikaevekv..tdfeei.ekygVmsvPalvi..dgk 58
                   C  C++++ +++e+a++ +  ++++kv    +++  +++g++s+P+l++  +g+
     EGE23802.1 31 CGPCKAIAPVLEELAEDYQGRVKIVKVdvDANPQSaARFGIRSIPTLFVfkNGE 84
                   999***************877777766545555556***********7634555 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.9e-06    0.0042      10      57 ..      31      81 ..      26     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.9e-06
                -HHHHHHHHHHHHHCCCTT..EEEEEEETTT-CCCHCCCCTT.TTEEEECT CS
      DUF836 10 ChlCeqakekLkelkleeg..leleviDIakdeeleakYgle.ipvlaleg 57
                C+ C+ +  +L+el+++ +  ++++++D++ +++  a++g + ip l++ +
  EGE23802.1 31 CGPCKAIAPVLEELAEDYQgrVKIVKVDVDANPQSAARFGIRsIPTLFVFK 81
                9***********988887789******************964388888766 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.4e-06    0.0037      46      99 ..      37      89 ..      10      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.4e-06
                HCHHHHHHHCT-TTS-EEEEEETHHHHHHHHHCCT-TSSSEEEEEETTEEEEEE CS
        HyaE 46 vaVvlpEllkaFpnalraavvadreqeealaerfgvlktPsllflrdgeylgvl 99
                 a vl El + ++ + +++ v   + + + a rfg++  P+l ++++ge + ++
  EGE23802.1 37 IAPVLEELAEDYQGRVKIVKVD-VDANPQSAARFGIRSIPTLFVFKNGERVETV 89
                56699*********99999887.88888899****************9988766 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.1e-05     0.027      36     102 ..      29      86 ..      27      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
                 BSSHHHHHHHHHHHHHHHH-SS-EEEEEEE---HHHHT-TTSHHHH..TS---SSSEEEEETSS-EE CS
      DUF953  36 sWCPdCvkaepvieealkeapedvklvrvdvGdrevWkdpanpfRkdpklkltgvPtLlrwkgkkrL 102
                 +WC  C +  pv+ee  ++    vk+v+vdv   ++           +++ +  +PtL  +k+ +r+
  EGE23802.1  29 AWCGPCKAIAPVLEELAEDYQGRVKIVKVDVDANPQ---------SAARFGIRSIPTLFVFKNGERV 86 
                 7*****************************976553.........3356677888888888887776 PP

>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.4e-06    0.0063     149     214 ..      22      89 ..      12      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.4e-06
                 EEEEEE-TTSTTHHHHHHHHHHHHHH-T.TSEEEEEEH.HHH--TTSS-TTT-SEEEEEETTEEEEEE CS
   Phosducin 149 ivvhiyedgvkgtealnssliclaaeyp.tvkfckvka.svigasdrfsrdvlpallvykagellsnf 214
                 ++v  +      ++a+   l  la +y   vk+ kv   ++  ++ rf    +p+l+v+k ge +   
  EGE23802.1  22 VLVDFWAAWCGPCKAIAPVLEELAEDYQgRVKIVKVDVdANPQSAARFGIRSIPTLFVFKNGERVETV 89 
                 6666666667779999999999*****647******8725667889*****************98765 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0025       2.1      16      60 ..      22      64 ..      17      68 .. 0.83
   2 !    8.6   0.0    0.0023       1.9     126     153 ..      59      88 ..      55     104 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0025
                   EEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..--- CS
  Thioredoxin_4 16 tvieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldke 60
                   +++ +    C  C++ +  +e+l e+y  +G+vk++  d+  +++
     EGE23802.1 22 VLVDFWAAWCGPCKAIAPVLEELAEDY--QGRVKIVKVDVDANPQ 64
                   577788889******************..******9888855544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0023
                    HHHHHHHHHHHT--SS-EEEE..TTEEE-T CS
  Thioredoxin_4 126 veaeskeakkagiestPtfii..ngekvee 153
                    v a+ ++a + gi s Pt+++  nge+ve+
     EGE23802.1  59 VDANPQSAARFGIRSIPTLFVfkNGERVET 88 
                    6778899999*****************864 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0044       3.7       8      34 ..      29      56 ..      23      60 .. 0.81
   2 ?    8.6   0.0    0.0018       1.5     149     190 ..      55     100 ..      53     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0044
                TTBHHHHHHHHHHHHHHHHCCT.EEEEE CS
        DSBA  8 vlCPyCylgkerleklaarspd.vkvvl 34
                  C+ C++ +++le+la+ +++ vk+v+
  EGE23802.1 29 AWCGPCKAIAPVLEELAEDYQGrVKIVK 56
                46******************77788886 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHTT-SSSSEEEE..TTC..EEEESSSSHHHHHH CS
        DSBA 149 vkeavrentaaaqslgvtGvPtvvv..dgk..rmvfGadrldtlad 190
                 vk +v+ n ++a++ g++ +Pt +v  +g+   +v+G  +   +a 
  EGE23802.1  55 VKVDVDANPQSAARFGIRSIPTLFVfkNGErvETVVGGRPKSEFAA 100
                 678999*******************998877778888877666665 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.7e-05     0.023     116     159 ..      40      81 ..      34      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.7e-05
                    HHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEE CS
  Thioredoxin_6 116 aiekvakefkdkinfaladaksfkrpleylglsssdlPvivivd 159
                    ++e++a++++++++++ +d++++++   ++g++  ++P++ +++
     EGE23802.1  40 VLEELAEDYQGRVKIVKVDVDANPQSAARFGIR--SIPTLFVFK 81 
                    579******************************..999999887 PP

>> TrbC_Ftype  Type-F conjugative transfer system pilin assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.2e-05     0.044      50      84 ..      43      86 ..      32     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.2e-05
  TrbC_Ftype 50 e.........emekasvqidPllFrqfkitaVPalvlaeedkas 84
                e         +  k++v+ +P+   +f+i+++P+l++ ++ ++ 
  EGE23802.1 43 ElaedyqgrvKIVKVDVDANPQSAARFGIRSIPTLFVFKNGERV 86
                3333355556668899999****************999887665 PP

>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.9e-05     0.042      18      94 ..      17      93 ..       6     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-05
                -SSSEEEEEEE-TT-HHHHHHHHHHHHHHHHTTTTEEEEEEETTT--TTSCCCTT-SSSEEEEEETTEEEEEE-SSS CS
        DIM1 18 eeerlvviRFGrdedaeClklDelLakiaeklknfaviylvdidevpdfnkmyeledpvtilffyrnkhmkvDfgtg 94
                +++ lv++ F  ++   C  +  +L++ ae+ +  ++i  vd+d  p+    + +++  t+++f ++ +++  +g  
  EGE23802.1 17 NSDGLVLVDFWAAWCGPCKAIAPVLEELAEDYQGRVKIVKVDVDANPQSAARFGIRSIPTLFVFKNGERVETVVGGR 93
                567899999***********************************************999*****9999887766655 PP

>> KaiB  KaiB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     9e-05     0.077      17      56 ..      40      78 ..      34      95 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9e-05
                HHHHHCCCHCTTTEEEEEEETTTSHCHHCCTCEESCCCCC CS
        KaiB 17 nlkkleeedlgfqyeLqvvdvleqPelaeedrlvatPaLi 56
                +l++l+e+  ++++++  vdv  +P+ a  + +  +P+L 
  EGE23802.1 40 VLEELAED-YQGRVKIVKVDVDANPQSAARFGIRSIPTLF 78
                55666555.7888999999*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 846.14
//
Query:       EGE23803.1  [L=422]
Description: transcription termination factor Rho [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-31  107.0   0.0    6.1e-31  106.1   0.0    1.5  1  Rho_RNA_bind  Rho termination factor, RNA-binding domain
    1.6e-24   86.8   0.1    2.4e-24   86.2   0.1    1.3  1  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
    6.1e-17   61.3   0.2    1.4e-16   60.1   0.2    1.7  1  Rho_N         Rho termination factor, N-terminal domain
    7.8e-05   22.7   0.0    0.00021   21.3   0.0    1.6  1  NACHT         NACHT domain
     0.0031   17.2   0.0     0.0069   16.0   0.0    1.6  1  OB_RNB        Ribonuclease B OB domain
     0.0056   16.3   0.1       0.02   14.4   0.1    1.9  1  AAA_25        AAA domain
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.044   14.1   0.0    1.7  1  AAA_22        AAA domain
      0.029   14.6   0.0      0.095   12.9   0.0    1.8  1  AAA_28        AAA domain
      0.046   14.1   0.0       0.11   12.9   0.0    1.6  1  AAA           ATPase family associated with various cellular 
      0.088   12.7   0.1        4.2    7.3   0.0    2.6  2  DUF2249       Uncharacterized conserved protein (DUF2249)
       0.12   12.3   0.0       0.27   11.2   0.0    1.6  1  Mor           Mor transcription activator family


Domain annotation for each model (and alignments):
>> Rho_RNA_bind  Rho termination factor, RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   3.8e-34   6.1e-31       2      73 .]      52     125 ..      51     125 .. 0.98

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 3.8e-34
                   EEEEEE-TTS-EEEE-G..TT---TT-EEE-CCCCCCTT--TT-EEEEEEE---SSS-SEEECEECEETTEEXX CS
  Rho_RNA_bind   2 eGiLeilpdgygFlRts..nylpgpedvYVsasqirkfgLrtGDaveGkvrppkerekynaLlrvesvngeepe 73 
                   +G+Leilpdg+gFlR+s  +yl+gp+d+YVs+sqir+f+L+tGD ++G++rppk++e+y+aLl+v+++n ++p+
    EGE23803.1  52 NGVLEILPDGFGFLRSSegSYLAGPDDIYVSPSQIRRFNLQTGDSIAGQIRPPKDSERYFALLKVSEINFDTPD 125
                   7****************99***************************************************9986 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.1   1.4e-27   2.4e-24       3     211 ..     160     363 ..     158     365 .. 0.91

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 1.4e-27
                  HHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS..S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   3 rvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd..d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlA 97 
                  r++D++ pi++Gqr +i++  + Gktv++q++++  +++  + + i+ +i er +ev+e+ +++  +       +va+t +ep+   ++++ + i  A
   EGE23803.1 160 RIIDLIAPIGKGQRSIIVAPPKAGKTVLLQTIAQAITKNhpEcYLIVLLIDERPEEVTEMQRTVWGE-------VVASTFDEPPQRHIQVAEMVIEKA 250
                  89***************************999999877766579**************987777653.......89********************** PP

                  HHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCS.TTSHHHHHHHHHSSEEEEB- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  98 EyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggD.fsdpvttatlgitdgfivLd 194
                    + +++++v++++ds++r a+A++ +  + g++  + g  a    +  ++   a ++ ++ Gs+ti+ +  ++ g  ++  + ++  g  +  i L+
   EGE23803.1 251 KRLVEHKQDVVILLDSITRLARAYNTVIPSSGKVL-TGGVDAHALERPKRFFGAARNV-EEGGSLTIISTALIDTGSkMDSVIFEEFKGTGNQEITLE 346
                  ********************************986.589*******************.678******99999877615566778888888999**** PP

                  HHHHHTTBSSSBCTTTE CS
                  xxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 195 kklaqrkhfPainvlvS 211
                  ++la+r++fPain+ +S
   EGE23803.1 347 RELAERRIFPAINIKKS 363
                  **************999 PP

>> Rho_N  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.2   8.8e-20   1.4e-16       1      43 []       5      47 ..       5      47 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 8.8e-20
                HHHHS-HHHHHHHHHHTT-TTGGGS-HHHHHHHHHHGGGSSSS CS
       Rho_N  1 eLkektlseLraiAkelgienysrlRKqdLIfaIlkaqaekgg 43
                eLk+k++ eL+aiA+ +g+ n++r RKqd+IfaIlk++a++g+
  EGE23803.1  5 ELKSKSVGELLAIAEHMGLDNMARSRKQDIIFAILKTHARNGE 47
                8****************************************97 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.3e-07   0.00021      12      96 ..     183     273 ..     174     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.3e-07
                 CHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-......-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE.......EEEE-STT-SS- CS
       NACHT  12 GKTtLlqklalawaegklpqgafklvFflslrelsrsgna...rsladllfsqlpepaapvsevwavllelperlL.......lilDglDelvtd 96 
                 GKT+Llq +a+a+ ++++++  +  v++    e++++ ++   +   ++++s ++ep +++ +v ++++e ++rl+       ++lD++ +l++ 
  EGE23803.1 183 GKTVLLQTIAQAITKNHPEC--YLIVLL--IDERPEEVTEmqrTVWGEVVASTFDEPPQRHIQVAEMVIEKAKRLVehkqdvvILLDSITRLARA 273
                 *****************777..344444..44444443334456999**********99999988888888888888888888*****9988775 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.2e-06    0.0069       1      43 [.      53     102 ..      53     110 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.2e-06
                 EEEEE-SSS-EEEEECT......TEEEEE-HHHHTT..S-TT-EEEEEEE CS
      OB_RNB   1 GtvrahkkGFGFlipde.....gkeDifippeqmkk..amhGDrVlvrit 43 
                 G++++ ++GFGFl+  e     g +Di+++p+q+++     GD +  +i 
  EGE23803.1  53 GVLEILPDGFGFLRSSEgsylaGPDDIYVSPSQIRRfnLQTGDSIAGQIR 102
                 7889999*******9999***************98511455666665555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   1.2e-05      0.02      31      85 ..     169     216 ..     160     277 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
      AAA_25  31 pagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsede 85 
                  +g  ++++++p++GKt+l+  +a a+++ +p           Vl+++ E +e+ 
  EGE23803.1 169 GKGQRSIIVAPPKAGKTVLLQTIAQAITKNHPECY------LIVLLID-ERPEEV 216
                 68999***********************9997432......2333333.555544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.7e-05     0.044       9     103 ..     175     270 ..     169     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevv....fvtlpsst...sskdllrellralglelkaerlsseell.ealeqalraravielliiDE 99 
                 ++++++ +GKT+ll+++++  ++       +pe++    +++   ++    +++++ e++  + +e   +  +  e++ e+  + ++++++ +++++D 
  EGE23803.1 175 IIVAPPKAGKTVLLQTIAQAITKN------HPECYlivlLIDERPEEvteMQRTVWGEVVASTFDEPPQRHIQVAEMViEKAKRLVEHKQD-VVILLDS 266
                 799****************98532......4444444467777777777777888777666665555555888888888999999999999.*****98 PP

      AAA_22 100 aqhl 103
                 + +l
  EGE23803.1 267 ITRL 270
                 8887 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.9e-05     0.095       7      82 ..     179     268 ..     173     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.9e-05
      AAA_28   7 gestGKTtlleaLa.....ar............gypvvpEaareileeklakgedalpwvedllafaervleeqleeeaaaaankvlfcDrgl 82 
                 ++ +GKT ll+ +a     ++              + v+E+ r+++ e  a+++d+ p+  + +++ae+v+e++ +++ + +++ v+++D  +
  EGE23803.1 179 PPKAGKTVLLQTIAqaitkNHpecylivllideRPEEVTEMQRTVWGEVVASTFDEPPQ--RHIQVAEMVIEKA-KRLVEHKQDVVILLDSIT 268
                 677999999999995555422666777777764566899999****9999****98886..89*****999865.678888899999999755 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.7e-05      0.11       3      74 ..     176     274 ..     174     286 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.7e-05
                 EESSTTSSHHHHHHHHHHHHTHE....................EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS......TS.EEEEEETGGGHHHHH CS
         AAA   3 lyGppGtGKTllakavakelgve....................fleisgsellskyvgesekkirelfkeakeka......kp.silfiDEidalaksr 74 
                 ++ pp  GKT l + +a+ +  +                    + ++   e++ +++ e +++  ++ + + eka      k+ +++++D i +la++ 
  EGE23803.1 176 IVAPPKAGKTVLLQTIAQAITKNhpecylivlliderpeevteMQRTVWGEVVASTFDEPPQRHIQVAEMVIEKAkrlvehKQdVVILLDSITRLARAY 274
                 788****************85333444444444444444444455555556665677777777666666654444456676444*********999875 PP

>> DUF2249  Uncharacterized conserved protein (DUF2249)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0026       4.2       8      31 ..     124     147 ..     116     149 .. 0.90
   2 ?    2.3   0.0     0.092   1.5e+02      11      33 ..     295     317 ..     289     318 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0026
     DUF2249   8 ppperhaaIfeafeaLapGetlel 31 
                 p + rh++Ife ++ L p ++l+l
  EGE23803.1 124 PDRSRHKLIFENLTPLFPTQQLVL 147
                 8899*****************997 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.092
     DUF2249  11 erhaaIfeafeaLapGetlelvn 33 
                 er ++ f+a++++++G +l++++
  EGE23803.1 295 ERPKRFFGAARNVEEGGSLTIIS 317
                 566788**************997 PP

>> Mor  Mor transcription activator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.27      59     103 ..     324     368 ..     307     372 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHH--SS-HHHHHHHHT--HHHHHHHHHHHHH--XXX CS
         Mor  59 lelrdreifnefkGnnvaeLarkYglseqwiykiikrvrkeeiar 103
                  +++d  if+efkG   +e++ + +l+e++i+  i+  +++ +++
  EGE23803.1 324 GSKMDSVIFEEFKGTGNQEITLERELAERRIFPAINIKKSSTRRE 368
                 589*****************************9998666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 3348.65
//
Query:       EGE23804.1  [L=116]
Description: hypothetical protein EA1_08221 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.37   11.4   3.2       0.86   10.2   3.2    1.7  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s
        2.1    7.6  19.8        2.5    7.4  19.8    1.1  1  DUF4407   Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.2   9.5e-05      0.86       6      18 .]       8      20 ..       4      20 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.5e-05
      LPAM_1  6 lalgalllLsGCs 18
                +al a+l+L++Cs
  EGE23804.1  8 SALIATLALTACS 20
                79**********9 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  19.8   0.00028       2.5     124     215 ..      23     115 ..       6     116 .] 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00028
     DUF4407 124 keqlaaaltaelaeleaqia....alqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaal 215
                 +eq +aa++a++a++ea  a    a++a+ +aa ++ +a++++ ++ ++g+  tg  ++ G+ +a++++ a++d+aqa+ ++++a   at++++++
  EGE23804.1  23 QEQAEAAADATVAANEASAAmtgdAAEAAAEAAADATAAANEASAAAMTGDAMTGD-AMTGDAAATEAAHAAADQAQANAEAAQAA--ATEATEQA 115
                 55566667777777777777777677777777777777777777788899999995.599*************************9..88887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1775  (0.0990016); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 875.44
//
Query:       EGE23805.1  [L=137]
Description: OsmC family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-14   53.5   0.0    3.3e-14   53.2   0.0    1.1  1  OsmC      OsmC-like protein
  ------ inclusion threshold ------
       0.11   12.9   0.9       0.55   10.7   0.0    2.5  3  HiaBD2    HiaBD2_N domain of Trimeric autotransporter adhesin


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   3.7e-18   3.3e-14       3      99 ..      36     132 ..      34     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 3.7e-18
                 XS.SB-HHHHHHHHHHHHHHHHHHHHTCCCT---.SCEEEEEEEEEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHHHHHSHHHHHHCT-SSSEE CS
        OsmC   3 gs.gpsPeelllaalasCfaitlravakkkgikl.edleveveaerdpegakgiteirlkvevkipgadseeklkkllekaekrCpvsntlkngvkvel 99 
                 ++ g +Pe+++++++a+Cf  +l+ v k +  ++  + ev++e++++ +  + + +  ++v  + ++++ e++l  l+ek++  Cp+s++++ +++++l
  EGE23805.1  36 NQaGNNPEQFFAMGYAACFDGALALVKKSADKSFdSRTEVTIELNKEGDSNF-FFTGAIHVVASNGDIT-EDELLSLVEKTHTVCPYSKAVQGNIDMKL 132
                 44599*************************9999544488887777777777.7778899*99767666.8*************************987 PP

>> HiaBD2  HiaBD2_N domain of Trimeric autotransporter adhesin (GIN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.16   1.4e+03      23      37 ..       5      19 ..       2      43 .. 0.71
   2 ?   -1.1   0.1       0.3   2.7e+03      34      46 ..      55      67 ..      25      69 .. 0.58
   3 ?   10.7   0.0   6.1e-05      0.55       1      42 [.      73     113 ..      73     128 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.16
      HiaBD2 23 adlakqvdgAknGLv 37
                 +++ +v gA +G  
  EGE23805.1  5 YQTTASVSGARTGTA 19
                577777777777744 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.3
      HiaBD2 34 nGLvnLnekgagk 46
                +G + L +k+a+k
  EGE23805.1 55 DGALALVKKSADK 67
                4445555666665 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 6.1e-05
      HiaBD2   1 tNVtSgLKtYgdTnfnaannsaadlakqvdgAknGLvnLnek 42 
                 t Vt+ L++ gd+nf + ++++ ++a + d   + L+ L ek
  EGE23805.1  73 TEVTIELNKEGDSNF-FFTGAIHVVASNGDITEDELLSLVEK 113
                 67************8.6789***9999998888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1105.15
//
Query:       EGE23806.1  [L=508]
Description: fumarate hydratase class I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-101  339.5   0.2   1.8e-101  339.1   0.2    1.2  1  Fumerase         Fumarate hydratase (Fumerase)
    3.1e-79  265.1   0.0    4.6e-79  264.5   0.0    1.2  1  Fumerase_C       Fumarase C-terminus
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.21   11.5   0.0    1.4  1  Cleaved_Adhesin  Cleaved Adhesin Domain


Domain annotation for each model (and alignments):
>> Fumerase  Fumarate hydratase (Fumerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.1   0.2    3e-105  1.8e-101       2     269 ..      11     288 ..      10     289 .. 0.96

  Alignments for each domain:
  == domain 1  score: 339.1 bits;  conditional E-value: 3e-105
    Fumerase   2 eaveealkeastelpedvlealkkalekEesenakevleqlleNaeiAaeeklplCqDTGiavvfvkigeeve.vetgdleeaineGvreayk..egpl 97 
                 +++++a++++s+++p+d++eal +al++Ee+++ak+++ q+l N++++ae+++p+CqDTGia+vf+k+g++v+   t+++e+++neGvr+ay+  ++ l
  EGE23806.1  11 QSIADAFQYISYYHPTDYIEALVEALAREENPAAKDAMTQILVNSRMCAEGHRPICQDTGIATVFLKVGMNVTwDATMSVEDMVNEGVRRAYNhaDNTL 109
                 789*********************************************************************955677**************9999*** PP

    Fumerase  98 Rksvvadpl.erkntgdnlPavihielvpgdeleitvlakGgGsenksklkmlnpsdglegvkkfvletvkeagtnaCpPlvlgvgiGgtseeaallak 195
                 R+sv++dp  +r+nt+dn+Pavih+++v gd++e+t++akGgGsenkskl+mlnpsd   +++++vl+t++++g+ +CpP++lg+giGgt e+aallak
  EGE23806.1 110 RASVLTDPAgKRQNTKDNTPAVIHMQIVAGDKVEVTCAAKGGGSENKSKLAMLNPSD---DIVDWVLKTIPTMGAGWCPPGILGIGIGGTPEKAALLAK 205
                 ********88*********************************************77...*************************************** PP

    Fumerase 196 kallrelgeenpdee.........laeleeellekinklgiGpqGlGGkttvldvkierlprhiAslpvavnvsCsadRrakv 269
                 ++l+ +++ ++ +++          ++l+ e+++k+n+lgiG+qGlGG ttvldvki  +p+h+As pva+ ++C+a+R++++
  EGE23806.1 206 ESLMSHIDIHKLKQKadsgaqlstTEALRLEIYDKVNALGIGAQGLGGLTTVLDVKILDYPTHAASKPVAMIPNCAATRHVEF 288
                 ***********77776777777666*******************************************************986 PP

>> Fumerase_C  Fumarase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.5   0.0   7.6e-83   4.6e-79       1     205 [.     292     491 ..     292     492 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.5 bits;  conditional E-value: 7.6e-83
  Fumerase_C   1 GvflekleeepakllpeveekekkeeavevdLnqketeeelskykvgtrlllsGkllvaRDaaHkrlkerlekgeelpeyvklkdrviYyaGPvktped 99 
                 G+++ +l +++++++p+v+++ +  + +++++++  t+ee++++++g++lllsGk++++RDaaHkr++++l++ge+lp  v++++++iYy+GPv++++d
  EGE23806.1 292 GSGPVELMPPSLDVYPDVTYNPE--NGKRINVDT-LTKEEIANWQTGDVLLLSGKIYTGRDAAHKRMTDMLNNGETLP--VDFTNKIIYYVGPVDPVGD 385
                 788899999********999999..89*******.*******************************************..9****************** PP

  Fumerase_C 100 eavgsaGPTTatRmdkyvekllkktgllimlaKgnrskkvleaikkhggvYLgaiGGaAilakkaikkvevvefeelGmEAiyeievedfpafvvvddk 198
                 e+vg+aGPTTatRmdk+++++l++tgll+m++K++r++++++ai ++++vYL+a+GG+A+l++kaik+++vv+f+elGmEAiye+ev d+p++v+vd++
  EGE23806.1 386 EVVGPAGPTTATRMDKFTRQMLEQTGLLGMIGKSERGEAACQAIADNKAVYLMAVGGSAYLVSKAIKNAKVVAFPELGMEAIYEFEVCDMPVTVAVDSS 484
                 *************************************************************************************************** PP

  Fumerase_C 199 Gndlfke 205
                 G++++++
  EGE23806.1 485 GSSVHAT 491
                 *****86 PP

>> Cleaved_Adhesin  Cleaved Adhesin Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.4e-05      0.21      41     118 ..     333     416 ..     319     454 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.4e-05
  Cleaved_Adhesin  41 hsGdlv.vsskswtgssGaltpdnYLitpelklpeegakkvkYwvasqdtfpsehYavmvsttGteaadfvillfeet.....l 118
                      ++Gd   +s k++tg   a +    ++ +  +lp +  +k++Y+v   d++ +e  +    tt t ++ f+  ++e+t     +
       EGE23806.1 333 QTGDVLlLSGKIYTGRDAAHKRMTDMLNNGETLPVDFTNKIIYYVGPVDPVGDEVVGPAGPTTATRMDKFTRQMLEQTgllgmI 416
                      566654145578888887766666666677779*********************************************543222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3939.85
//
Query:       EGE23807.1  [L=365]
Description: histidinol-phosphate aminotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-62  212.2   0.0    1.4e-62  212.0   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II
  ------ inclusion threshold ------
      0.038   13.0   0.0        2.6    6.9   0.0    2.1  2  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   0.0   1.5e-66   1.4e-62       2     362 ..      28     356 ..      27     357 .. 0.95

  Alignments for each domain:
  == domain 1  score: 212.0 bits;  conditional E-value: 1.5e-66
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH.HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke.galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdei 96 
                    ++++L++ne+++     ++p+++ a++   a +   l  y+ ++ ++el+++la+++g      l  + +v vg+G++++++++++++ +++++  
     EGE23807.1  28 NLVKLNTNENPYP----PSPKAVMAMQAvLADEACALRLYPEPE-SDELRQTLADYHG------LGLD-EVFVGNGSDEVLALVFACF-FMKQRPL 110
                    789**********....999999999998899999999******.*************......9999.*******************.******* PP

                    EEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHT.TEEEEEEETTT CS
  Aminotran_1_2  97 lvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakky.nlllfvDeaYa 191
                    l+pd +y+ y  ++   g++ +++pl+  +df++d++++ +           + +i++++p+ PtG +++ e+++kl  +a  +  +++++DeaY 
     EGE23807.1 111 LMPDISYSFYPVYADTFGVTTQSIPLK--DDFSIDIKEYHQ----------SCDGIILANPNAPTGRLLPIEDIKKL--IAM-HpDAVVVIDEAYI 191
                    *************************99..***********9..........788***********************..444.449********** PP

                    TCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS...SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 192 gfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls...ssllqaavaaalsdallkqseleemrqrlqkr 284
                    + + + ++a a + ++ + +nl+i++++sK+ +laG+RvG++++n++++ +l  ++++f+s   + l+qa + a+++d+     ++e+ r +++k+
     EGE23807.1 192 DYADDVKQASA-VRLIRQFDNLVITQTFSKSRALAGLRVGMAFANPNLIAALMAMKNSFNSyplDRLAQAGAKASVEDVA----YFEDKRTQVIKL 282
                    ****9777755.778888888***********************************************************....9*********** PP

                    HHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 285 rkelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelvea 362
                    rk l++ L+ lg++vl+s ++++  t+ +++ a +ls++L++e gv+v+++++++++  lRi+v  +t++++++l++ 
     EGE23807.1 283 RKALTQDLQTLGFIVLPSAANFVFATLPNHQ-AADLSQALRQE-GVIVRHFNQPRIKDYLRISV--GTQAQNQRLIDV 356
                    *********************9999999999.***********.********************..*********986 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0   0.00029       2.6     110     177 ..     125     189 ..     121     193 .. 0.88
   2 ?    3.8   0.0    0.0025        22     277     336 ..     276     329 ..     260     351 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00029
                  HHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHT.T-EEEEE-T CS
  Aminotran_5 110 krtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkk.galvlvDaa 177
                  ++ g++ + ipl+++ ++d++e+++     ++ ++++  +  tG + p+e+i+kl+  + +a+v++D a
   EGE23807.1 125 DTFGVTTQSIPLKDDFSIDIKEYHQS----CDGIILANPNAPTGRLLPIEDIKKLIAMHpDAVVVIDEA 189
                  57899999999999999999999665....567889999999***************988*******76 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0025
                  HHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEE CS
  Aminotran_5 277 ekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavr 336
                  +++  +l+++l++ l+ l+ + l      +  a+ v  ++++++a+d+ ++L++eg+ vr
   EGE23807.1 276 RTQVIKLRKALTQDLQTLGFIVL------PSAANFVFATLPNHQAADLSQALRQEGVIVR 329
                  45566788888888888888888......56788888888******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2916.30
//
Query:       EGE23808.1  [L=435]
Description: histidinol dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-158  528.6   2.5   1.3e-158  528.4   2.5    1.0  1  Histidinol_dh  Histidinol dehydrogenase
  ------ inclusion threshold ------
       0.18   12.2   0.0       0.38   11.1   0.0    1.5  1  MbeB_N         MbeB-like, N-term conserved region


Domain annotation for each model (and alignments):
>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.4   2.5  1.4e-162  1.3e-158       7     408 ..      28     432 ..      23     433 .. 0.97

  Alignments for each domain:
  == domain 1  score: 528.4 bits;  conditional E-value: 1.4e-162
                    --HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCSS.S.SGGCCEE-HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHCC----EEEEEECTTEEEEE CS
  Histidinol_dh   7 dseeveetvkeiledvreeGdealleytekFDkv.k.kleslrvseeeieealekldeelkealeeaaenirkfheaqkeseeevketepgvvlgq 100
                    +++++ +tv++i+++vre+Gd+a+l++t++FDk+   ++++l vs++++++a++ l +++k+al+ aa++i +fh++q+e+   + +++ g  lgq
     EGE23808.1  28 TDSTLIATVNDIIAAVREDGDDAVLKLTQEFDKHpAkSMHELFVSADQLKAAFDGLADDVKHALQYAAKRIFEFHQHQVEAGFRF-TDHLGNSLGQ 122
                    5667899*************************998437799**************************************865555.999******* PP

                    EEEE-SEEEEE---STT--CHHHHHHHHHHHHHT-SEEEEEE-SSGG.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH--SSS---SEEE---SH CS
  Histidinol_dh 101 kvrpiervGlYvPgGkaaypStvlmnavpAkvAgvkeivvvtPpqdgkvnpavlaaaklagvdeiykvGGaqAiaalAyGtesipkvdkivGPGni 196
                    kv p++rvG+YvPgG a+ypS+vlmna+pAkvAgv +i++v+P+ +g++np vlaaa+l gvd+++++GGaqA+aalAyGt+si+kvdki+GPGn+
     EGE23808.1 123 KVIPLDRVGIYVPGGLASYPSSVLMNAIPAKVAGVGHITMVVPAPNGELNPLVLAAAHLSGVDSVITIGGAQAVAALAYGTDSIAKVDKITGPGNK 218
                    *******************************************99*************************************************** PP

                    HHHHHHHHHCTTBEES----S-EEEEEE-TT..S-HHHHHHHHHHHHTT-TT-EEEEEES-HHHHHHHHHHHHHHHCC-TTHHHHHHHHCCH-EEE CS
  Histidinol_dh 197 yVaaAKrlvsgevgiDmiaGPsEvlviaDet..adpefvAaDLlsqaEHdedaqavlvttseelaeaveeevekqleelprkeiaekslekqsaii 290
                    yVaaAKr+v+g+vgiDmiaGPsEvlv a+ +   +++++A+DLlsqaEHd+ aqa++vtt  + ++av++++++ l+elp+++ia+++l++++a+i
     EGE23808.1 219 YVAAAKRAVFGQVGIDMIAGPSEVLVYAEGEpdDNADWLAMDLLSQAEHDTVAQAIFVTTCPSQLDAVKDAIDHALAELPKADIAKQALASRGALI 314
                    ****************************98644899************************************************************ PP

                    E-SSHHHHHHHHHHH--SEEEEESTTHHHHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S-GGGGEEEEEEEEE-HHHHHHHH CS
  Histidinol_dh 291 lvedleeaielaneyApEHlelqvedpeellekiknaGaiflGeyspeslgDYaaGtnhvLPTsgtArfssglsvedFlkkisvqelskealkela 386
                    lv++ +e i+++n++ApEHlel++++pee+ + +++aGa+flG+++pe++gDY+aG+nhvLPTsgtArfss+l+v+dF+kk+s+++++++++k la
     EGE23808.1 315 LVKNRAEGINIINQVAPEHLELSLNNPEEVEQYVRHAGAVFLGRHTPEAIGDYCAGSNHVLPTSGTARFSSPLGVYDFTKKTSLIYCTPNGAKPLA 410
                    ************************************************************************************************ PP

                    HHHHHHHHHTT-HHHHHHHHHH CS
  Histidinol_dh 387 eavetlAeaEgLeaHaeavkvR 408
                    +++  lA  E+L+aHa ++++R
     EGE23808.1 411 KTADILAVQENLDAHALSARYR 432
                    *******************999 PP

>> MbeB_N  MbeB-like, N-term conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.2e-05      0.38       5      48 ..      52      98 ..      50     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.2e-05
      MbeB_N  5 LdLAktFeq...kskeqaeSteemvksafekheksvkeaLkesekki 48
                L+L ++F +   ks  +    + ++k+af  +  +vk aL+ ++k+i
  EGE23808.1 52 LKLTQEFDKhpaKSMHELFVSADQLKAAFDGLADDVKHALQYAAKRI 98
                66777777644467777777789***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3449.02
//
Query:       EGE23809.1  [L=33]
Description: hypothetical protein EA1_08246 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       119  (0.00663729); expected 358.6 (0.02)
Passed bias filter:                      106  (0.00591221); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 256.50
//
Query:       EGE23810.1  [L=218]
Description: ATP phosphoribosyltransferase catalytic subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-49  166.7   0.0    4.6e-49  166.4   0.0    1.1  1  HisG      ATP phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> HisG  ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.0   2.6e-53   4.6e-49       1     158 [.      60     209 ..      60     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 2.6e-53
                 -GGGHHHHHHTTSSSEEEEEHHHHHHCT...TEEEEEEESESEEEEEEEEETTSS--SGCGG.TT-.EEEEES-HHHHHHHHHHTT-EEEEEE-SS-CT CS
        HisG   1 raadiptyVeegavdlGitGkDvveEskeeeeveelldLgfgkcklvvavpeesevkslkdlvedkgkriaTsypnlakkyfeekglkveiiklsGsvE 99 
                 ra+d+ptyVe+ga+d+G+ GkDv+ E +  ++++elldLg++kc+l+ a  + +       l  ++++riaT+y+n+a++yf+++g +v+iikl+Gs+E
  EGE23810.1  60 RASDVPTYVEHGAADIGVAGKDVLIEYD--AQIYELLDLGIAKCRLMTAGVKGAV------L-PNRRLRIATKYTNVARNYFASRGEQVDIIKLYGSME 149
                 89************************74..57*******************9432......2.33559******************************* PP

                 HHHHTTS-SEEEEEESSSHHHHHTTEEEEEEEEEEEEEEEEEHHHHH.SHHHHHHHHHHH CS
        HisG 100 aapalglaDaIvDlvetGeTLrangLkaietilessavLiankkslk.kkekieellerl 158
                 +ap +gl D+IvD+v+tG+TLrangL+ +eti+++s++Li+n+ s+k k  +ie +l+ l
  EGE23810.1 150 LAPLVGLGDLIVDVVDTGNTLRANGLEPLETICQVSSRLIVNPVSYKrKLVQIEPILQIL 209
                 **********************************************94444888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1742.64
//
Query:       EGE23811.1  [L=420]
Description: UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.2e-103  344.7   4.2     7e-103  344.5   4.2    1.0  1  EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvin
  ------ inclusion threshold ------
       0.14   12.4   0.0       0.31   11.3   0.0    1.5  1  BK_channel_a   Calcium-activated BK potassium channel alpha s


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.5   4.2  7.8e-107    7e-103       4     417 .]       9     408 ..       6     408 .. 0.96

  Alignments for each domain:
  == domain 1  score: 344.5 bits;  conditional E-value: 7.8e-107
                    SS--EEEEE--B-HHHHHHHHHHHGGG.BSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHHHH CS
  EPSP_synthase   4 gkrlegevkvpGsksisnralllAaLa.egestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalrlL 98 
                     +r+ gev+++G  ++++++ll+A L+ +ge+ + n+++++D+ + +e++   g++i+k+   ++v+ +++   ++ ap+elv+++++s+++l++L
     EGE23811.1   9 ASRIIGEVTISG-SKNAALPLLAAMLLpNGETVLHNVPTLKDTATLIELIAGTGVKIYKE--GNTVTADASVVTNYYAPYELVRTMRASILVLGPL 101
                    57899*******.789********9983456***********************999998..799999***********9**************** PP

                    HHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEETSS-BEEEEETSSTTHHHHHHHHHHHTTSBSEEEEES-TTHHHH CS
  EPSP_synthase  99 tallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkglklkgveikaevsSqqvtsllllaallaegtteleelasepsi 194
                    +a++++a  ev+L+G++si++RP+d++l+aL+++Ga+ieve+g++ka +   g +l g ++++++++++ t+++++aa+la gtt+le+ a ep++
     EGE23811.1 102 LARFGEA--EVSLPGGCSIGSRPVDQHLKALEAMGATIEVENGYVKARAP-AGGRLIGCDFSFDMVTVGGTENIIMAATLALGTTRLENCATEPEV 194
                    *****99..9***************************************9.78******************************************* PP

                    HHHHHHHHHTT-EEEETTSSEEEEEE--SSB--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEEEEESTSEEE CS
  EPSP_synthase 195 ddtlkmlkkfgikietsgteesitvkGkeklpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaeitqeedasiv 290
                    +d+++ml ++g+ki++ gt++ + ++G+e+l+g+ey+v++D+++++ +l+ A++++g+v+v n+ ++ l      + ++ e mga+it++  ++i+
     EGE23811.1 195 VDLANMLVAMGAKISGIGTTT-MVIEGVESLHGCEYSVIADRIETGSYLAGALMSRGDVLVLNTSAEFLH----PVLKKFEAMGATITTGH-NWIR 284
                    ****************99998.************************************************....6677*************.9999 PP

                    EEETTS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.EB-EEEE-TTSTTTTHH CS
  EPSP_synthase 291 vgpsglklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaekqlkgaevesydDhRiama 386
                      +   ++k+vdi+t ++++++++++a++++    +eg++ + +++++++++++ eL+++Ga+++++ ++ i++++ek + +a v+++ D+R++m+
     EGE23811.1 285 AVM-TTRPKAVDIRTQVHPGFPTDMQAQLMAVCCLAEGTSTIIENIFENRFMHVPELQRMGANIRIDGHTAIVKGVEK-FMPAPVMAT-DLRASMS 377
                    999.7*****************************************************************98777776.*********.******* PP

                    HHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 387 lalaglvaegeveiddiectdksfpefeekL 417
                    l++a+  aege  id+i+++d+++ + e+kL
     EGE23811.1 378 LVMAAACAEGESVIDRIYHIDRGYDDVENKL 408
                    *************************999987 PP

>> BK_channel_a  Calcium-activated BK potassium channel alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.4e-05      0.31      16      42 ..     307     333 ..     304     345 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.4e-05
  BK_channel_a  16 elKlglLAqsclcpGistllanLissa 42 
                   +++ +l+A  cl++G+st++ n+++++
    EGE23811.1 307 DMQAQLMAVCCLAEGTSTIIENIFENR 333
                   57889******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3343.28
//
Query:       EGE23812.1  [L=80]
Description: BolA familiy protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-14   54.0   0.1    1.8e-14   53.7   0.1    1.1  1  BolA      BolA-like protein


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.1     1e-18   1.8e-14      25      76 .]      22      74 ..       8      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 1e-18
        BolA 25 aggetHFkvvivseaFegkslvarhRlvyalLkeelakg.iHALslktktpee 76
                 +++  F+++iv +aFegk+lvar+++vy+l+++ +++g +HAL++++ tp+e
  EGE23812.1 22 VNEGNKFELLIVDDAFEGKRLVARQQMVYTLVNQYIQNGaMHALTIHALTPAE 74
                457889******************************8888***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 619.64
//
Query:       EGE23813.1  [L=253]
Description: putative phospholipid binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-11   42.2   0.0    1.7e-05   25.0   0.0    2.2  2  BON       BON domain


Domain annotation for each model (and alignments):
>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   9.7e-10   1.7e-05       1      68 [.      42     111 ..      42     112 .. 0.86
   2 !   15.2   0.0   1.1e-06      0.02       3      44 ..     124     165 ..     122     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 9.7e-10
                 EHHCCHHHHHHHHHHHCHTTG..CCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEEE CS
         BON   1 dDaeiaakvkaalakdgglda..adinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkvr 68 
                 +D+ i+   ++ la  +g+++   +i++ + + +V+L+G+V+se+ k  + + + +   V+kV n l+v+
  EGE23813.1  42 SDSSIELTARRNLATIPGVSPntVRIDIASFRREVLLTGEVPSEQIKIEVGRTIDSMRDVEKVFNYLTVV 111
                 5888888888999988888663377777777777********************************9997 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.1e-06
                 HCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHH CS
         BON   3 aeiaakvkaalakdggldaadinVevenGvVtLsGtVdseae 44 
                 + +++k++++l+ +++l+++  +V+v +  +++ G+ +se++
  EGE23813.1 124 NYLRSKINTRLLTNRHLKSSQYKVVVRDRTAYVLGYLTSEQQ 165
                 5699************************99*******66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1888.45
//
Query:       EGE23814.1  [L=137]
Description: hypothetical protein EA1_08271 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-22   79.0   0.0      3e-22   78.6   0.0    1.1  1  UPF0102    Uncharacterised protein family UPF0102
     0.0074   16.3   0.0     0.0087   16.1   0.0    1.1  1  Mrr_cat    Restriction endonuclease
  ------ inclusion threshold ------
      0.098   12.2   0.1       0.26   10.9   0.0    1.8  1  AHJR-like  REase_AHJR-like


Domain annotation for each model (and alignments):
>> UPF0102  Uncharacterised protein family UPF0102
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   5.1e-26     3e-22       2      77 ..      19     119 ..      18     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 5.1e-26
                 HHHHHHHHHHTT-EEEEEEEEETT.EEEEEEE.............TTEEEEEEEEE-......-------HHHHHHHHHHHHHHH...........EEE CS
     UPF0102   2 EelaaeyLekkgyeilernwrcra.gEiDiia.............tevlvfvEVKtRssekfgspaeavtprKqrrlrraaeayl...........rfD 75 
                 E+la++ L+++gyei+ +n+ + + gEiDiia             + + vfvEV++R+s+ +g+++e+vt +Kq++++r+ae +l           rfD
  EGE23814.1  19 EQLAVDKLKQAGYEIILTNFTTPFvGEIDIIArqpleqshrlvqpRFCTVFVEVRSRTSSVYGTALESVTSKKQAKIYRTAERFLinypkyiddayRFD 117
                 9********************9888******************996679************************************************** PP

                 EE CS
     UPF0102  76 vv 77 
                 v+
  EGE23814.1 118 VM 119
                 *8 PP

>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.5e-06    0.0087       5      84 ..      14     104 ..      10     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.5e-06
                 -TTCHHHHHHHHHHHHSSSEEE---B-T..TSSB--EEEETTEEEE.........EEEEEEE--TS-B-HHHHHHHHHHCTT..S..SEEEEE CS
     Mrr_cat   5 spkeFeklvaellealGykeveltgrsg..DggiDliakkdplgse.........rilvqaKryknkvgvkeVqeligalkk..rgadkgifv 84 
                 ++  Fe+l+ + l++ Gy+ + lt+ +    g iD+ia++  l++          +++v+++ ++++v   +++++ +  ++  ++  + +++
  EGE23814.1  14 QGDVFEQLAVDKLKQAGYE-IILTNFTTpfVGEIDIIARQP-LEQShrlvqprfcTVFVEVRSRTSSVYGTALESVTSKKQAkiYRTAERFLI 104
                 6788**************9.8888876644789*****985.55445889999999*******999999999888887777644444455555 PP

>> AHJR-like  REase_AHJR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.3e-05      0.26      13      78 ..      18      90 ..       6     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.3e-05
   AHJR-like 13 lesla.eqyrekGyevllhPnredlPdfLksYrpDliarkdee...........aviiEvksrrssaseqyLqelaka 78
                +e+la +++++ Gye++l   + ++P f +  + D+iar+  e           +v +Ev+sr+ss+    L++++++
  EGE23814.1 18 FEQLAvDKLKQAGYEIILT--NFTTP-FVG--EIDIIARQPLEqshrlvqprfcTVFVEVRSRTSSVYGTALESVTSK 90
                5555425677778888875..23344.455..4799999998889999999999****************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1106.40
//
Query:       EGE23815.1  [L=164]
Description: RDD family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-26   92.5   5.4    3.1e-26   92.3   5.4    1.0  1  RDD       RDD family


Domain annotation for each model (and alignments):
>> RDD  RDD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   5.4   1.7e-30   3.1e-26       1     141 []      20     156 ..      20     156 .. 0.90

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 1.7e-30
         RDD   1 laslgrRllAfliDlvllliislllallivall....nakasaneavagslllllllvlllvllvyqllllskkgqTlGklllglkvvd.edgrklgla 94 
                 +a+++ R++A l+D++++ ii ++++++ + ++    ++     +    +l+ ++ ++l lv ++  +++++kkg+T+Gk+l+gl+v+d ++g+ +++ 
  EGE23815.1  20 YAGFWIRFVACLVDNLIIMIIIAPYWFYNYQQMmampADQIPFYSVGDAILYSAGDAILNLVMAAAVVWFWVKKGATPGKMLFGLQVRDaKTGQFISVP 118
                 79*****************************999997555555555555566666677777889999******************************** PP

         RDD  95 qaliRalllllllvlglslvlllllligflfvlfsrkrqalhDklag 141
                 +al+R +          +l++ ++l +g+++v f++k+q++hDk+a+
  EGE23815.1 119 RALLRYF---------SYLISSVILCLGLIWVGFDKKKQGWHDKIAK 156
                 ******9.........9****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1303.11
//
Query:       EGE23816.1  [L=160]
Description: rRNA large subunit methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-48  165.0   0.0    1.3e-48  164.9   0.0    1.0  1  SPOUT_MTase    Predicted SPOUT methyltransferase
  ------ inclusion threshold ------
      0.049   13.0   0.0       0.07   12.5   0.0    1.2  1  SPOUT_MTase_2  AF2226-like SPOUT RNA Methylase fused to THUMP


Domain annotation for each model (and alignments):
>> SPOUT_MTase  Predicted SPOUT methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.9   0.0   1.5e-52   1.3e-48       1     154 []       1     157 [.       1     157 [. 0.95

  Alignments for each domain:
  == domain 1  score: 164.9 bits;  conditional E-value: 1.5e-52
                  XEEEEEEES---H.HHHHHHHHHHHHHTTT-EEEEEEE........--..-S-HHHHHHHHHHT--....TT-EEEEE-TTSEE--HHHHHHHHHHHH CS
  SPOUT_MTase   1 mkikiiavgklkekylkelieeYlkrlkkyakleiielk....kekks..ekeeekakekegerilkklkkkayvillderGkelsSeelakklekla 92 
                  mk++i+++g+++++++++++eeYlkr+++++++e++el+    ++  +   +e++k k+ e+++il++ ++k+++ ll+++Gk+ls+e+l++kl+ ++
   EGE23816.1   1 MKLRILSIGHKMPNWVQQGFEEYLKRIQPMISVEMVELPpakrSK--TpsPAEIDKYKAIEATTILNAKHPKERLWLLEVKGKMLSTEHLSDKLSVAM 96 
                  9*************************************5343333..245999********************************************9 PP

                  HHT-.-EEEEE--TT---GGGGGG-SEEEE--SS---HHHHHHHHHHHHHHHHHHHT--XXX CS
  SPOUT_MTase  93 eegkselvfvIGGsdGlseevkkradeklslsklTfpHqlvrvvllEQiYRaftIlkgepYH 154
                  ++g  ++++vIGG+dG+s+e++++ad+k+sls+lT+pH lvr++++EQ+YRa+++++++pYH
   EGE23816.1  97 QDGA-DIALVIGGADGVSPEILQAADFKWSLSELTLPHPLVRIIVIEQLYRAMSLINHHPYH 157
                  9999.********************************************************* PP

>> SPOUT_MTase_2  AF2226-like SPOUT RNA Methylase fused to THUMP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.8e-06      0.07      90     144 ..      66     122 ..      53     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.8e-06
  SPOUT_MTase_2  90 krrkkellivtdPeGeeis..evkeelaealrkakevvvlvGsReGiPkGlfrfadf 144
                    +++ ke l +++ +G+ +s  ++ ++l+ a++    +++++G  +G+   +++ adf
     EGE23816.1  66 AKHPKERLWLLEVKGKMLSteHLSDKLSVAMQDGADIALVIGGADGVSPEILQAADF 122
                    566678899999999987533789********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1221.56
//
Query:       EGE23817.1  [L=38]
Description: polynucleotide phosphorylase/polyadenylase, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-05   24.3   0.4      3e-05   24.3   0.4    1.0  1  S1        S1 RNA binding domain
     0.0014   18.4   0.0     0.0014   18.4   0.0    1.0  1  DUF3016   Protein of unknown function (DUF3016)
  ------ inclusion threshold ------
      0.073   13.1   0.1       0.09   12.8   0.1    1.1  1  EFP       Elongation factor P (EF-P) OB domain
      0.097   12.6   0.0       0.11   12.5   0.0    1.1  1  BPL_C     Biotin protein ligase C terminal domain


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.4   6.7e-09     3e-05      40      75 .]       2      35 ..       1      35 [. 0.92

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.7e-09
                SCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1 40 darvedpdevlkvGdevkvkvlkvdkdrrriilsik 75
                + rve+ ++ lk+G++vkv+v+++d+  r i l++k
  EGE23817.1  2 E-RVENVSDYLKEGQTVKVQVQDIDNRGR-IKLTMK 35
                6.89*********************9977.999986 PP

>> DUF3016  Protein of unknown function (DUF3016)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.2e-07    0.0014      41      69 ..       6      34 ..       3      38 .] 0.87

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.2e-07
     DUF3016 41 laekaLpegqkLevevtDvdlAGdvepwr 69
                + + +L+egq+++v+v D+d  G+++ ++
  EGE23817.1  6 NVSDYLKEGQTVKVQVQDIDNRGRIKLTM 34
                56789******************999866 PP

>> EFP  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     2e-05      0.09      30      48 ..       3      21 ..       2      25 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
                HHTTGCGG--TT-EEEEEE CS
         EFP 30 qlgdaakfLkEgmevtvll 48
                 +++ +++LkEg++v+v+ 
  EGE23817.1  3 RVENVSDYLKEGQTVKVQV 21
                677777*********9975 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.4e-05      0.11      11      28 ..      13      30 ..       7      36 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
                TSCEEEEEEEEE-TTSEE CS
       BPL_C 11 edgkveGiavGIdddGaL 28
                e+++v   +++Id +G+ 
  EGE23817.1 13 EGQTVKVQVQDIDNRGRI 30
                79**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 312.20
//
Query:       EGE23868.1  [L=692]
Description: glycyl-tRNA synthetase subunit beta [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-195  651.2   0.0   1.9e-195  650.8   0.0    1.1  1  tRNA_synt_2f  Glycyl-tRNA synthetase beta subunit
    3.4e-10   40.1   0.1      1e-09   38.6   0.1    1.8  1  DALR_1        DALR anticodon binding domain
     0.0016   18.0   0.1      0.003   17.1   0.1    1.4  1  HDOD          HDOD domain
  ------ inclusion threshold ------
       0.13   11.1   0.0       0.22   10.3   0.0    1.3  1  DUF267        Caenorhabditis protein of unknown function, DUF


Domain annotation for each model (and alignments):
>> tRNA_synt_2f  Glycyl-tRNA synthetase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  650.8   0.0  4.3e-199  1.9e-195       2     533 ..       5     553 ..       4     554 .. 0.98

  Alignments for each domain:
  == domain 1  score: 650.8 bits;  conditional E-value: 4.3e-199
  tRNA_synt_2f   2 LlEigtEElPakalkkaleqlkkllekalkearlsyeevevfatpRRLallveglaekqadkeeekkgppvkvafdadgkptkaaegflrkqgve.. 96 
                   L+E+gtEElP+k lk+++++lk+++ + l+++++s++++++fa+pRRLal+++g+ e q+d+ e+kkgp+vk+afd++g+ t+a +gfl++ +++  
    EGE23868.1   5 LFELGTEELPPKNLKTLRDALKNSVGTLLNDQNISFDDIHAFAAPRRLALTITGVGEFQPDRIETKKGPSVKAAFDDAGNLTRAGQGFLQGLNATgr 101
                   9******************************************************************************************988877 PP

  tRNA_synt_2f  97 ...veeleveekkkgeylfakkekkgretaelLaelleelikklpfpksMrWgsselrFvRPvrwlvallgeevvpveiaglksgrttrghrfla.e 189
                      v++l +  +kkgey++++ + kg+++++l++++l++++++lp++k+Mr g  + +F+RPv+w+v++ ++ v++++i+g k+g+++rghr ++ +
    EGE23868.1 102 nlsVKDLGRIADKKGEYIAYDLTIKGEKITDLMPNILQKALDDLPIAKRMRSGIDRHEFIRPVHWIVLMSDDVVIDATIQGHKTGNQSRGHRYHSpD 198
                   777999999999**********************************************************************************989 PP

  tRNA_synt_2f 190 eveiksaddYaekleeakVivdaeeRkekIleqlealakeagleveedeeLleevtaLvEwPvvllGsfdeefLelPeevlittmkehqkyfpvrdk 286
                    ++i++ad+Y++ l++++Vi+d+++R++ Il+q+++la+++++++ +++eLl+evtaLv+ Pv+l +sf e+fL++P+e+li+tm+++qkyf ++d+
    EGE23868.1 199 FFAIDHADHYENLLKNHHVIADFDQRQADILAQVKTLADDVNGTAIMPQELLDEVTALVDLPVALRASFPERFLAVPQEALISTMQADQKYFCLTDQ 295
                   9**************************************99******************************************************** PP

  tRNA_synt_2f 287 egkLlpkFivvsnieskdeeaviaGnerVlraRLsDAkFFyeeDlkkplesrvekLkkvvFhekLGslldkverieklaeelaeekle....eaera 379
                   +gkL+p+Fi++sni+skd++++i+Gne+V+r+RLsDA+FF+ +D+k+pl +  ++Lk+ +F++kLG+l++k eri++la+++a+ +++    +a ra
    EGE23868.1 296 AGKLMPHFIFISNINSKDSAQIITGNEKVVRPRLSDAEFFFLQDQKQPLFELSHHLKTQIFQDKLGTLWEKSERIANLAAHIAD-QIGantdAAYRA 391
                   ***********************************************************************************5.653344478*** PP

  tRNA_synt_2f 380 aeLaKaDLvtemVgeFpeLqGimGryYakadgekeeVaeAieehylprgagdelPetkvgavvaladkldtlvglfaigekptGskDPfaLRRaalg 476
                     L+K+DL++++VgeFpeLqGi G+yYa+ ++e++ Va+Aiee+ylp+++gd+lP+t+vg+++alad+ldtlvg+f+ige+p+GskDPf LRRa++g
    EGE23868.1 392 GLLSKCDLASRLVGEFPELQGIAGTYYARLNHEPDVVADAIEEQYLPKFSGDKLPATHVGVALALADRLDTLVGIFGIGEIPSGSKDPFSLRRASIG 488
                   ************************************************************************************************* PP

  tRNA_synt_2f 477 virillekklrldlkellekalealk........vleelleFfaeRlkvllreegiradlvdavl 533
                   ++ril+ek+lr++l++l+++al  +         +l+e++eF+  R++++++e+g+ +d+++av 
    EGE23868.1 489 ILRILIEKRLRVSLSHLVKQALMGYGdilenidqTLTEVMEFINARYRAMYSEQGVLVDTIQAVQ 553
                   **********************888899999999999**************************96 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   2.3e-13     1e-09       5     104 ..     586     681 ..     582     687 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 2.3e-13
                 HHHHHHHHHHTTCTTCCCCHCCHCCS-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHHHHHHHHH CS
      DALR_1   5 haRiksilrkaeeegekleeealalleeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLvkavrqv 103
                   R+++il ka++ + + ++++  l  e++e +L++a+   +  ++   ++ +++ +++ l +L++  ++f++++ v+ ++e  + ++RLaL+++vr+ 
  EGE23868.1 586 NKRVANILAKAGTVQGDVTPQN--L-IEPAEQALYQAIESAKVSVQPLHNHGDYQGILTTLVSLSEPLTQFFDHVMVNADDETLK-QNRLALLSQVRKL 680
                 68*******9997765554444..3.579************************************************98887755.***********97 PP

                 H CS
      DALR_1 104 L 104
                 +
  EGE23868.1 681 F 681
                 6 PP

>> HDOD  HDOD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   6.7e-07     0.003      89     129 ..     357     396 ..     346     405 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.7e-07
                 SS-HHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHTTT CS
        HDOD  89 gadlkklwehslavAlvarelaeelgledpeeaflaGLLhd 129
                 + +l +lwe+s ++A +a ++a+++g +  + a+ aGLL +
  EGE23868.1 357 QDKLGTLWEKSERIANLAAHIADQIGANT-DAAYRAGLLSK 396
                 567889*********************99.*********86 PP

>> DUF267  Caenorhabditis protein of unknown function, DUF267
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.9e-05      0.22     205     235 ..     209     239 ..     202     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.9e-05
      DUF267 205 ekkLknpqvlekFskRqaellelvrkanesL 235
                 e+ Lkn++v+++F++Rqa++l  v+++   +
  EGE23868.1 209 ENLLKNHHVIADFDQRQADILAQVKTLADDV 239
                 6789*******************99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4983.07
//
Query:       EGE23869.1  [L=312]
Description: glycyl-tRNA synthetase subunit alpha [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.4e-151  501.3   0.1   7.3e-151  501.1   0.1    1.0  1  tRNA-synt_2e  Glycyl-tRNA synthetase alpha subunit
  ------ inclusion threshold ------
      0.094   13.3   0.0       0.32   11.6   0.0    1.9  2  Lipase_C      Lipase C-terminal domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2e  Glycyl-tRNA synthetase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  501.1   0.1  8.2e-155  7.3e-151       1     277 [.       9     289 ..       9     290 .. 0.99

  Alignments for each domain:
  == domain 1  score: 501.1 bits;  conditional E-value: 8.2e-155
                   HHHHHHHHHHHHHCTT-EE----SS--SSGGGSHHHHTCCCSSS-EEEEEEEEEE-GGG--TT-STT--SEEEEEEEEEES--TTHHHHHHHHHHHC CS
  tRNA-synt_2e   1 fqelilklqkfwaeqgcvilqpydlevGagtlhpatflralgpepwkvayvepsrRptDgrygenpnrlqkyyqfqvilkPspeniqelylesleal 97 
                   fq lil+lq++wa++gcv+lqpyd+evGagt+h+atflral pe w++ayv+psrRptDgryg+npnrlq+yyqfqv+lkP+p+niqelyl sl+a+
    EGE23869.1   9 FQALILTLQNYWASRGCVVLQPYDMEVGAGTFHTATFLRALTPERWNAAYVQPSRRPTDGRYGDNPNRLQHYYQFQVVLKPNPANIQELYLGSLKAI 105
                   89*********************************************************************************************** PP

                   T--CCCS-EEEEEEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEEETTEE-SS--EEEEEEHHHHHHHHCT-SSGGG-ECCT....TEEHHHHHHHH CS
  tRNA-synt_2e  98 gidlkehdirfveDdWesptlGawGlGwevwldGmeitqftYfqqvgglelkpvsveityGleRlamylqevdnvydlewne....kvtygdvflqn 190
                   gid+ +hd+rfveD+WesptlGawGlGwevwl+Gme+tqftYfqqvgg+e+ pv++eityGleRlamy+q+vd+vydl+w++    +vtygdvf+qn
    EGE23869.1 106 GIDTLTHDVRFVEDNWESPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIECFPVTGEITYGLERLAMYIQGVDSVYDLVWADgefgRVTYGDVFHQN 202
                   ********************************************************************************9977777********** PP

                   HHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  tRNA-synt_2e 191 eveqsaynfeeadvelllklfeeyekeakrllekklvlpaydlvlkashtfnlldargaisvterakyiarvrklakkvaeayleqr 277
                   eveqsaynfe+a+v++l++lf+ ye++a +l++ +l+lpay++vlkash+fnlldargaisvter+++i rvr+la+kva +y+e+r
    EGE23869.1 203 EVEQSAYNFEHANVAKLFELFDFYEEQADKLVAVNLPLPAYEMVLKASHAFNLLDARGAISVTERQRFILRVRTLARKVAISYTEAR 289
                   ***********************************************************************************9976 PP

>> Lipase_C  Lipase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.5e-05      0.32      32      78 ..      50      98 ..      24     103 .. 0.82
   2 ?   -2.2   0.0       0.7   6.3e+03      47      56 ..     185     194 ..     178     207 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.5e-05
                TS-BSSSS-SEEEEEE..SEE.EEEEETT--EEEEEE.ETT.--EEEEE CS
    Lipase_C 32 tGkRktrapvkstrvaadGrfGplaarggqsyEfvls.rpg.eattHlY 78
                t +R ++a v+  r  +dGr+G+   r +++y f+++ +p  ++++ lY
  EGE23869.1 50 TPERWNAAYVQPSRRPTDGRYGDNPNRLQHYYQFQVVlKPNpANIQELY 98
                67888999999999999*****************865255545555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.7
                 E..SEE.EEE CS
    Lipase_C  47 aadGrfGpla 56 
                  adG+fG ++
  EGE23869.1 185 WADGEFGRVT 194
                 4699999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 2724.35
//
Query:       EGE23870.1  [L=81]
Description: putative stress-responsive transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-22   77.2   1.1    6.9e-22   77.0   1.1    1.1  1  PspC          PspC domain
    0.00079   18.7   0.6    0.00088   18.5   0.6    1.1  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> PspC  PspC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   1.1   7.7e-26   6.9e-22       2      53 .]       6      64 ..       5      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 7.7e-26
        PspC  2 rLyRspdnkvlgGVcaGlAeyfgvdptlvRlifvlll.......glllYiilwiilPea 53
                +L Rs+++++++GV++G+Aey+g++p++vR++fv+++       g+l+Y++lw+i+P+a
  EGE23870.1  6 KLHRSKNHRMIAGVMGGIAEYLGWSPNMVRIAFVIISslsaavpGILIYLVLWLIMPNA 64
                79*******************************************************86 PP

>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.6   9.8e-08   0.00088     167     209 ..      23      65 ..      14      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.8e-08
  BPD_transp_2 167 aaralGinvkrvklltfvisgalAglaGallalllgsippnig 209
                   +a++lG++++ v+++ ++is++ A++ G+l++l l  i pn+ 
    EGE23870.1  23 IAEYLGWSPNMVRIAFVIISSLSAAVPGILIYLVLWLIMPNAT 65 
                   79*******************************9988887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 628.98
//
Query:       EGE23871.1  [L=351]
Description: nicotinamide-nucleotide adenylyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-28  100.3   0.1    1.8e-28   99.9   0.1    1.2  1  AAA_28       AAA domain
     0.0048   16.8   0.0      0.077   12.8   0.0    2.2  2  dNK          Deoxynucleoside kinase
  ------ inclusion threshold ------
       0.03   14.0   0.1      0.044   13.4   0.1    1.4  1  ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-bindi
      0.068   13.5   0.0       0.11   12.9   0.0    1.4  1  AAA_16       AAA ATPase domain
       0.11   12.9   0.0       0.18   12.2   0.0    1.4  1  AAA_17       AAA domain
       0.11   12.1   0.1        0.2   11.3   0.1    1.4  1  SRP54        SRP54-type protein, GTPase domain
       0.17   11.8   0.0       0.31   10.9   0.0    1.4  1  NACHT        NACHT domain


Domain annotation for each model (and alignments):
>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.1   6.9e-32   1.8e-28       2     163 .]     168     329 ..     167     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 6.9e-32
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvvpEaareileeklakgedalpwvedllafaervleeqleeeaaaaankvlfcDrglldtlaYarayggeaeae 99 
                 ++i+Gges+GKTtl+++La+  g ++ pE++r ++ ++l   e al+++ d   +a+   ++++e+++ +a++ v+++D+++ +t a+++ y+g++++ 
  EGE23871.1 168 VCIVGGESSGKTTLVQKLANYyGASIAPEMGRLYTHSHLGGSELALQYS-DYASIAIN-HANAIETARTTASSAVTLIDTDFATTQAFCEIYEGRTHPL 264
                 89******************88*************************96.88888876.6789********************************9999 PP

      AAA_28 100 leaaarekrydlvfllppapeidddgeRr.edleereaiderlrealrelgipviivpsgdveeR 163
                 + + a+++r d  ++l+++  ++ dg Rr  d+++r  ++++l+e+l +++i  +i++ +d+++R
  EGE23871.1 265 VAEFAKQMRLDFTIYLDNNVAWVADGMRRlGDDHQRSLFANKLLEILARYDIGHHIINDTDYHKR 329
                 99999*************98888*****95699****************************9988 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     3e-05     0.077       2      53 ..     169     222 ..     168     242 .. 0.81
   2 ?    1.6   0.0     0.082   2.1e+02     106     142 ..     254     293 ..     239     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
                 EEEESTTSSHHHHHHHHHCCSTCEEEE-HHHHCCSSSS..HHHHHHHHSHHHHH CS
         dNK   2 vveGnIgaGKstlvklLskklgvkvfeEpvdkwtnvqk..nlLekfYkdpsrws 53 
                 ++ G  ++GK+tlv+ L++ +g  +++E+   +t  +     L + Y d +  +
  EGE23871.1 169 CIVGGESSGKTTLVQKLANYYGASIAPEMGRLYTHSHLggSELALQYSDYASIA 222
                 8889999*********************99999554436788888888876555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.082
                 HHHHHHHHHHHHHHCCH...-SEEEEEE--HHHHHHHHHH CS
         dNK 106 lkiykelldnlleelak...pdlliYLkasletclerikk 142
                  +iy+   + l+ e+ak   +d+ iYL+ ++  +   +++
  EGE23871.1 254 CEIYEGRTHPLVAEFAKqmrLDFTIYLDNNVAWVADGMRR 293
                 47888889999988888888*******9988777666665 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.7e-05     0.044      11      45 ..     162     193 ..     154     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
                  EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  11 ivqGqrtlipgafgvGktvisqslskqsnsddaii 45 
                  +   q+++i+g+   Gkt+++q+l+++     a+i
   EGE23871.1 162 YFYTQTVCIVGGESSGKTTLVQKLANYYG---ASI 193
                  56679*********************952...445 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05      0.11      25      76 ..     166     222 ..     151     321 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd.....ggiflrgkcdqlesaipysalaqal 76 
                 + v ++G   +GK++lv++l++++ ++     g +++  +   +e a+ ys +a+++
  EGE23871.1 166 QTVCIVGGESSGKTTLVQKLANYYGASiapemGRLYTHSHLGGSELALQYSDYASIA 222
                 678999999************988888666442222322222223345555555554 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.2e-05      0.18       1     111 [.     171     283 ..     171     303 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.2e-05
                 EE-TTSSHHHHHHHHHHHHTEEEE.EHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEET.....TEEEESSH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthl.saGdllreeakrgglakardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeq.....agfldglp 93 
                 +Gg  sGK+t+++kl+  yg ++  ++G l       gg++ a ++ + +++ +++   ++a+e+ + +a++   l+d+ + + +      +g    l 
  EGE23871.1 171 VGGESSGKTTLVQKLANYYGASIApEMGRLYTHS-HLGGSELALQYSDYASIAINH---ANAIETARTTASSAVTLIDTDFATTQAfceiyEGRTHPLV 265
                 69999***************99876999988744.334444456666666666666...6788888888888888999988752222222233333333 PP

                 HHHHHHH..SEEEEEE-- CS
      AAA_17  94 kevleelkpdaiillead 111
                 +e+ +++  d+ i+l+ +
  EGE23871.1 266 AEFAKQMRLDFTIYLDNN 283
                 555677777888887755 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   7.7e-05       0.2       3      26 ..     167     190 ..     165     196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.7e-05
                 EEEEEESTTSSHHHHHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaallk 26 
                  + +vG + +GKTt + KLa+++ 
  EGE23871.1 167 TVCIVGGESSGKTTLVQKLANYYG 190
                 5789*****************995 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.31       2      22 ..     167     187 ..     166     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                 +v++ G   sGKTtL+qkla 
  EGE23871.1 167 TVCIVGGESSGKTTLVQKLAN 187
                 899****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2333.02
//
Query:       EGE23872.1  [L=253]
Description: nicotinamide mononucleotide transporter PnuC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-36  124.8  28.0    3.6e-36  124.8  28.0    1.9  2  NMN_transporter  Nicotinamide mononucleotide transporter
  ------ inclusion threshold ------
        3.1    6.5   3.9         20    3.9   0.3    2.1  2  DUF5423          Family of unknown function (DUF5423)


Domain annotation for each model (and alignments):
>> NMN_transporter  Nicotinamide mononucleotide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   4.7     0.096   8.6e+02      76     119 ..      17      54 ..       7      54 .. 0.56
   2 !  124.8  28.0     4e-40   3.6e-36       1     176 []      47     243 ..      47     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.096
  NMN_transporter  76 kltkkewlilllvivlgtallgfllkaltdaalpvlDafttvls 119
                      ++t++ +l+ ++++++++ +++   ++    a  +lD f +++s
       EGE23872.1  17 WTTSWVLLWFVCGFIALFTGFW--TTT----AHTHLDWFYFIIS 54 
                      5566666666666665555333..222....2356777777665 PP

  == domain 2  score: 124.8 bits;  conditional E-value: 4e-40
  NMN_transporter   1 slleligallgllsvl.laarrniwnwpvgiisvllyivvffqaglygdallqlfyivmsiyGwirWsknkkk..a.v.rkltkkewlilllvi 89 
                      +++++i +++gl++v+ l++r+ni+++ +g+++++  ++v+ ++g +g +l  lf +++++yG+ +Ws+++ +  + + +++ k  wli++++i
       EGE23872.1  47 DWFYFIISIIGLVCVVsLSFRKNITGNGLGMVATAGEVIVQGTSGAVGLMLAPLFNFFTHVYGVKYWSNHTGAdgDmIpKSAGKYVWLITICFI 140
                      59*******************************************************************9998763578*************** PP

  NMN_transporter  90 vlgtallgfllkal.................tdaalpvlDafttvlsivaqllmarryvenWllWivvdvvsvvlyllkglyvtailyvvylvl 166
                      vlg++ l+ +++++                    ++ +++++++vlsi+aq++m++ry+ nW+lWivv++v+++++l++g++++ai++v+y ++
       EGE23872.1 141 VLGLL-LFPTVNTWlanmgyvvvendgsrflGRIDFFWINVLAFVLSITAQTMMILRYSLNWWLWIVVNAVWLIINLMTGNTIFAIQTVIYQIN 233
                      *****.787777743333444444433333344456788******************************************************* PP

  NMN_transporter 167 avyglleWrk 176
                      a++gl+ W++
       EGE23872.1 234 AFVGLYGWHR 243
                      ********86 PP

>> DUF5423  Family of unknown function (DUF5423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3    0.0022        20      12      56 ..      41      86 ..      31     102 .. 0.67
   2 ?    3.9   0.4    0.0023        21      85     137 ..     180     232 ..     170     250 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0022
     DUF5423 12 drhpklryvydialiaisilcivsiilw..tqgsglalfaiapalai 56
                  h +l + y i  i i ++c+vs+ +     g gl ++a a  + +
  EGE23872.1 41 TAHTHLDWFYFIISI-IGLVCVVSLSFRknITGNGLGMVATAGEVIV 86
                468889999987655.8899999998761156888988888876554 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0023
     DUF5423  85 slpfiltgtaaglmfsaiavgggavilanplflmgsmtlgfalmslhrvtyqy 137
                  l f+l+ ta  +m+   ++     i+ n ++l+  +  g ++++++ v yq 
  EGE23872.1 180 VLAFVLSITAQTMMILRYSLNWWLWIVVNAVWLIINLMTGNTIFAIQTVIYQI 232
                 589************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1830.18
//
Query:       EGE23873.1  [L=43]
Description: hypothetical protein EA1_07755 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 353.32
//
Query:       EGE23874.1  [L=219]
Description: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-16   59.8   1.4    3.3e-16   59.8   1.4    2.8  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   1.4   1.8e-20   3.3e-16       1      66 []      17     109 ..      17     109 .. 0.88
   2 ?   -2.3   4.6      0.45   8.1e+03      26      30 ..     186     197 ..     111     214 .. 0.60

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 1.8e-20
                      S-HHHHHHHHHHHHHHHHHGGGS-H...............................HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHH CS
  CDP-OH_P_transf   1 nlPnaiTllrlllsvlailllltyyp.............................lvlailllliasltDalDGklARrlnqvstlGkllDsla 65 
                      nlPn +T++r++++ l +   ++y p                              ++  ll+++a++tD+lDG+lARr+n +s +G++lD++a
       EGE23874.1  17 NLPNNLTIARIVMIPLFVA--IAYWPpalgigvpaipdnaiarlgmmgysdsmlrHLILTLLFILAAVTDWLDGYLARRMNITSAFGRFLDPVA 108
                      69**********9776664..3455589************************99866777777899999***********99888********* PP

                      H CS
  CDP-OH_P_transf  66 D 66 
                      D
       EGE23874.1 109 D 109
                      9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.45
                      .........HHH CS
  CDP-OH_P_transf  26 p.......lvla 30 
                              +v+a
       EGE23874.1 186 LemigyvlMVIA 197
                      133332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1893.98
//
Query:       EGE23875.1  [L=406]
Description: pyridine nucleotide-disulfide oxidoreductase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-135  452.3   0.0   1.4e-135  452.1   0.0    1.0  1  HI0933_like    HI0933-like protein
    1.8e-11   43.8   2.4    2.6e-06   26.8   0.1    3.1  3  FAD_binding_2  FAD binding domain
    9.3e-09   35.3   1.6      0.003   17.2   0.0    2.5  3  DAO            FAD dependent oxidoreductase
    2.6e-08   33.5   0.8     0.0011   18.4   0.0    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    4.7e-07   29.3   0.8      0.035   13.3   0.0    2.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.5e-07   29.2   0.0    1.4e-06   27.8   0.0    1.6  2  FAD_binding_3  FAD binding domain
    1.4e-06   27.9   0.0      2e-06   27.4   0.0    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
      5e-06   26.6   0.8    1.7e-05   25.0   0.8    1.9  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00019   21.9   0.2       0.24   12.0   0.1    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0021   18.0   0.0     0.0053   16.8   0.0    1.7  1  NAD_binding_9  FAD-NAD(P)-binding
     0.0026   16.4   0.0     0.0037   15.9   0.0    1.2  1  Mqo            Malate:quinone oxidoreductase (Mqo)
     0.0026   16.9   0.1      0.031   13.3   0.1    2.1  1  Lycopene_cycl  Lycopene cyclase protein
  ------ inclusion threshold ------
       0.01   15.0   3.9       0.33   10.0   0.4    2.8  3  GIDA           Glucose inhibited division protein A
      0.048   12.9   1.6       0.25   10.5   0.2    2.1  2  Thi4           Thi4 family
      0.098   11.9   0.1       0.81    8.9   0.0    2.0  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  452.1   0.0  1.2e-138  1.4e-135       2     408 ..       6     400 ..       5     401 .. 0.96

  Alignments for each domain:
  == domain 1  score: 452.1 bits;  conditional E-value: 1.2e-138
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETT-SGGGEEES...STTTTHHHHHHS-HHHHHHHHHHTT--EEE-STT CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGrcNvTnlseepeellsrypenpkflksalsrftnedlialveelgvelkeedsg 99 
                  d+++iG+Ga+Gl++A + a+ gk+Vl++++a+k+g+Kil+sGgGrcN+ n+++ep +++ +   np+f+ksals++++ed+i+lv+++ ++ +e+++g
   EGE23875.1   6 DTLIIGAGASGLFCAFNTAAYGKSVLIIDHANKAGKKILMSGGGRCNFVNKQVEPCHFIGQ---NPHFVKSALSKYQPEDFIDLVNRHHIAHQEREHG 100
                  789**********************************************************...********************************** PP

                  EEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE......TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT--EEEEEE CS
  HI0933_like 100 rlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktk.....seeeleadklvlAtGGlSiPklGstgkgyklaeqfghtivplrp 192
                  +lF+++ +a+di+++ll+e++ agv+++l+t+v+++++++++ f v++k       + ++a++lv+AtGGlSiP+lG++g+gy++a+qfgh+i+p+r+
   EGE23875.1 101 QLFCKN-SAKDILSMLLNECHMAGVDIHLKTTVQDIQATDTH-FLVTVKsqpdnRIKVIQAHALVIATGGLSIPTLGASGFGYQVATQFGHQIIPTRA 196
                  ******.*****************************887777.88888534443456899************************************** PP

                  ES--EE--.HHHHHCGGGTT-EEEEEEE...ECTTEEEEEEEEE-SSEEESHHHHHHTTT-......-TT--EEEECSTTS-...HHHHHHHHHHHTT CS
  HI0933_like 193 alvpltlk.esklklkelsGvslkavvlslkkkkkatekgellfThrGlsGpailqlSsyvakalekkeeetleidllPdldaeelkaalekekekes 289
                  +lvp+t++ +  ++ k+l+G+sl+ ++     ++ka++  ++lfThrGlsGpailqlS+++      +++e+++i+l+P  d   + + l + k+ ++
   EGE23875.1 197 GLVPFTFTdKVGEMIKSLAGLSLDVIAY----NDKASFDLPILFTHRGLSGPAILQLSNHW------QAGEQITINLVPTQD---VYQYLLDAKRIHP 281
                  *******96667789*********9994....7999*************************......***************...9************ PP

                  TSBHHHHHTTTS-HHHHHHHHHC..TTT-TTBGGG--HHHHHHHHHHHHSEEE--SEE--TTT-SEEEEEE-GGGB-TTT-BBTTSTTEEE-GGGBSE CS
  HI0933_like 290 kkslknalaellpkrlvevlleealieeedkklaqlskkelkklaealkaltvkvngteglrkaevTaGGVdlkevssktmeskkvpgLffaGEvlDv 387
                  k+ l++ala llpk+l+  +     ++ ++ +la+l++++++++ ++l+a+++k++gteg+r aevT+GGVd++ +s ktmes++ p+L+f+GEvlDv
   EGE23875.1 282 KQLLRTALAALLPKKLISGFEPLFWQAYQNIELANLKDETMHHIGQQLNAWHLKPSGTEGYRVAEVTLGGVDTHDISGKTMESRRQPNLYFIGEVLDV 379
                  ******************99999999899999****************************************************************** PP

                  EE-TTTHHHHHHHHHHHHHHH CS
  HI0933_like 388 egvtGGynlqaAwasgyaAGk 408
                   g++GGyn+++Awas+ya+++
   EGE23875.1 380 AGQLGGYNFTWAWASAYACAQ 400
                  *******************98 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   2.2e-09   2.6e-06       1      46 [.       6      51 ..       6      60 .. 0.91
   2 !   11.5   0.0   9.5e-05      0.11     139     204 ..     107     171 ..      65     195 .. 0.81
   3 ?    4.2   0.1     0.016        19     371     410 ..     347     387 ..     339     389 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.2e-09
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgid 46
                   D ++iG+G++GL +A + a  G++v++++ +++ g  + +s+Gg +
     EGE23875.1  6 DTLIIGAGASGLFCAFNTAAYGKSVLIIDHANKAGKKILMSGGGRC 51
                   89***************************************99954 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 9.5e-05
                    HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 139 tghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr 204
                    + + +l  l++++  agvd++ +t ++++  +d +   ++v+ + + r+  i+a+a+v+atgG + 
     EGE23875.1 107 SAKDILSMLLNECHMAGVDIHLKTTVQDIQATDTHFL-VTVKSQPDNRIKVIQAHALVIATGGLSI 171
                    4678999******999*************88777655.4455568888999************986 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.016
                    EES-EEEB.ETTSBESTTEEESSBTEEE-STCE..ESSSSTTS CS
  FAD_binding_2 371 ytmgGvet.dengrvldadgqpipGLYAaGeva..aggvhgan 410
                     t+gGv t d +g++   + +  p+LY +Gev+  ag+++g+n
     EGE23875.1 347 VTLGGVDThDISGKT--MESRRQPNLYFIGEVLdvAGQLGGYN 387
                    699***997788999..5666668*********8888888887 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3     3e-06    0.0036       1      33 [.       6      40 ..       6      49 .. 0.92
   2 !   17.2   0.0   2.5e-06     0.003     147     207 ..     110     171 ..      69     223 .. 0.70
   3 ?   -3.6   0.0       5.4   6.4e+03     330     349 ..     379     398 ..     345     400 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3e-06
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                d +iiG+G  Gl++A+  a+ g  V++++ ++ ag
  EGE23875.1  6 DTLIIGAGASGLFCAFNTAAYGksVLIIDHANKAG 40
                789*****************999******998776 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEE.TCEEEEEEECT.EEEE..EEEEEEE--GGGHHHH CS
         DAO 147 kltaalaraaealGveilegtevtgleeed.gkvwgverttp.gend..aadavVnaaGawsdll 207
                   +  l++++  +Gv+i+++t+v++++++d   +++v+   p ++++  +a+a+V+a+G  s  +
  EGE23875.1 110 DILSMLLNECHMAGVDIHLKTTVQDIQATDtHFLVTVK-SQPdNRIKviQAHALVIATGGLS--I 171
                 5667799*******************887756677774.23323333345677999999765..3 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5.4
                 EEEECTTTHHHHHHHHHHHH CS
         DAO 330 latGhsghGltlapatGkll 349
                 +a   +g  +t a+a++ + 
  EGE23875.1 379 VAGQLGGYNFTWAWASAYAC 398
                 55556777777777777655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.4   3.1e-05     0.038       1      31 [.       8      37 ..       8      44 .. 0.87
   2 !   18.4   0.0   8.8e-07    0.0011      89     140 ..     117     174 ..      83     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 +IiGaG+ Gl +a +    g  ++li++ +n
   EGE23875.1  8 LIIGAGASGLFCAFNTAAYGK-SVLIIDHAN 37
                 6*******************9.8*****984 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 8.8e-07
  Pyr_redox_3  89 evaksfelpiklfeeVesvkkedegfevetske......tyeAkkviiAtGefdkPnk 140
                  + ++   ++i+l+++V++++ +d++f v+ +++      +++A+ ++iAtG  ++P +
   EGE23875.1 117 NECHMAGVDIHLKTTVQDIQATDTHFLVTVKSQpdnrikVIQAHALVIATGGLSIPTL 174
                  556667899******************9998865566769************999975 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     3e-05     0.035     182     236 ..     108     167 ..      97     192 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
                  -HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE..EEEEEETTSCE....EEESEEEE-S- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx....xxxxxxxxxxx RF
  Pyr_redox_2 182 dkelsaaleealekeGvevklgtsvkeidgnge..klevvledgee....idadlvvvavG 236
                   k++  +l ++ +  Gv+++l+t+v++i++ ++   ++v+ ++ +     i+a  +v+a+G
   EGE23875.1 108 AKDILSMLLNECHMAGVDIHLKTTVQDIQATDThfLVTVK-SQPDNrikvIQAHALVIATG 167
                  455556666777778**************99996533333.333334677*********96 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.2e-09   1.4e-06       2     167 ..       5     171 ..       4     188 .. 0.89
   2 ?   -3.8   0.0       4.9   5.9e+03     243     287 ..     304     348 ..     302     351 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.2e-09
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS......S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp......radglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle 91 
                    +d+lI+GaG +Gl  a   + +G +v++++  +++ ++       r   +n+  +e    +G    + + + ++   +++        +++++ ++
     EGE23875.1   5 VDTLIIGAGASGLFCAFNTAAYGKSVLIIDHANKAGKKIlmsgggRCNFVNK-QVEPCHFIGQNPHFVKSALSKYQPEDFIDLV----NRHHIAHQ 95 
                    799***************************9888766555445556666665.69****************9999999999999....78888888 PP

                    CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-H CS
  FAD_binding_3  92 lesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrSt 167
                    ++  ++  +  + ++++ +L+++  ++g++++ kt v+ +++++++   +v+++ +++++ ++a  lv a Gg S+
     EGE23875.1  96 EREHGQLFCKNSAKDILSMLLNECHMAGVDIHLKTTVQDIQATDTHFLVTVKSQPDNRIKVIQAHALVIATGGLSI 171
                    889**************************************************************99999998874 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.9
                    HHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEESSSEETTEE CS
  FAD_binding_3 243 fteeevkarlreivgektldveieevsawtvaqrvaekyrkgrvf 287
                     +++ + ++  +  +++t+++  ++ +aw+++   +e yr   v 
     EGE23875.1 304 LFWQAYQNIELANLKDETMHHIGQQLNAWHLKPSGTEGYRVAEVT 348
                    567777778888888888888889999999998888888876665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.7e-09     2e-06       1     144 [.       6     167 ..       6     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.7e-09
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGG..lltsglvatdignkaee.............qvvtgiareflerlrqrggarlkkrskwn 82 
                   D +++G+g++G+ +A   a  G++vl+++  +  G   l+++g+++++++++ e              ++ +   ++f++ ++++  a++++++  +
    EGE23875.1   6 DTLIIGAGASGLFCAFNTAAYGKSVLIIDHANKAGKkiLMSGGGRCNFVNKQVEPchfigqnphfvksALSKYQPEDFIDLVNRHHIAHQEREH-GQ 101
                   779********************************74468999999999977666888888888777666667778899988664444444333.36 PP

  FAD_oxidored  83 tfepevakavleeml...aeagvtvllntrlvevekegkriesvtveske.g.rktirAkvfiDATg 144
                    f  + ak +l  +l   + agv++ l+t++++++ ++ +   vtv+s+  +  k+i+A+  + ATg
    EGE23875.1 102 LFCKNSAKDILSMLLnecHMAGVDIHLKTTVQDIQATD-THFLVTVKSQPdNrIKVIQAHALVIATG 167
                   9**************98888****************98.5455555555444599999999988886 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.8   1.4e-08   1.7e-05       1      32 [.       9      40 ..       9      50 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.4e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   I+GaG+sGl +A   a +g++vl+++++++ G
     EGE23875.1  9 IIGAGASGLFCAFNTAAYGKSVLIIDHANKAG 40
                   9****************************998 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1    0.0002      0.24       3      35 ..       8      40 ..       6      44 .. 0.91
   2 !    7.6   0.0    0.0047       5.6      40      77 ..     109     147 ..      88     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0002
                EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  3 vvvGgGyiglElAgalaelgkkVtvversdkll 35
                +++G+G +gl +A + a++gk+V +++ ++k  
  EGE23875.1  8 LIIGAGASGLFCAFNTAAYGKSVLIIDHANKAG 40
                8**************************998865 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0047
                 HHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEE CS
   Pyr_redox  40 eeaskilqeklekngievllntkveeiegsedg.vesvk 77 
                 +++ ++l ++    g++++l+t+v+ i+ ++   + +vk
  EGE23875.1 109 KDILSMLLNECHMAGVDIHLKTTVQDIQATDTHfLVTVK 147
                 55666667777777**************99988665554 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.4e-06    0.0053       2     155 ..       9     168 ..       8     169 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.4e-06
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdqseelllNvpasemslftddpptfaeWlrergalee...aeeldpddfvpR 93 
                    i+GaG++Gl ++ + +a        ++ ++d  +++g +++  +   ++  +N +++  +++  ++p+f++ + ++ + e+   + + +  ++  R
     EGE23875.1   9 IIGAGASGLFCAFNTAAY-----GKSVLIIDHaNKAG-KKILMSGGGRCNFVNKQVEPCHFIG-QNPHFVKSALSKYQPEDfidLVNRHHIAHQER 97 
                    9************99999.....5899*****77779.7777777677878888888777665.56777777666665222433222223333345 PP

  NAD_binding_9  94 alyGrYl....rdlfeellarlpegvtvevh.raevvdleeradgqavlladg.....aslaadaVvLAlGh 155
                     + + ++    +d++++ll++++    v++h +++v d++ +++++ v+ +++     + ++a+a+v+A+G 
     EGE23875.1  98 EHGQLFCknsaKDILSMLLNECHM-AGVDIHlKTTVQDIQATDTHFLVTVKSQpdnriKVIQAHALVIATGG 168
                    555555400015666677777733.355655499***********9777754433223458*********95 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.1e-06    0.0037     186     252 ..     115     179 ..      92     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.1e-06
         Mqo 186 llkalekkkgvelklkhevkdlkreedgkWkvkvkdlktgekkkvkakfvfiGaGGgalklLqksgi 252
                 ll+++ + +gv+++lk++v+d++ ++  ++ v+vk++ +++ k ++a+ + i +GG +++ L  sg 
  EGE23875.1 115 LLNEC-HMAGVDIHLKTTVQDIQATD-THFLVTVKSQPDNRIKVIQAHALVIATGGLSIPTLGASGF 179
                 55555.4589************8765.59********************************999875 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   2.6e-05     0.031       1     155 [.       6     184 ..       6     191 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlie....aspsllfpnnyvWsdefedlga..............leecvehsWsgtiv.ylddgkkill 77 
                    D ++iGaG+ gl  A +   a++g +v++i+    a++++l+++     + +++++               l + +     +++  +  ++++++ 
     EGE23875.1   6 DTLIIGAGASGLFCAFNT--AAYGKSVLIIDhankAGKKILMSGGGRCNFVNKQVEPchfigqnphfvksaLSKYQPEDFIDLVNrHHIAHQEREH 99 
                    789**************9..9999999999844445667776665555555555554557777888865554444444444433213345566666 PP

  Lycopene_cycl  78 graYgrvsskrlkeellerlvengv.klleakvesveeeeageslvvl..e.ggr..kirarlvvdarglaslk..karrlglQtf 155
                    g  + + s k++ ++ll+++  +gv + l+ +v+ +++ +  + lv++  + ++r   i+a + v a+g  s +  +a   g+Q++
     EGE23875.1 100 GQLFCKNSAKDILSMLLNECHMAGVdIHLKTTVQDIQATDT-HFLVTVksQpDNRikVIQAHALVIATGGLSIPtlGASGFGYQVA 184
                    67888889999**********88883567999**9999887.555544113144488899*9999999955555777888888876 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4   0.00028      0.33       2      31 ..       7      36 ..       6      52 .. 0.85
   2 ?   -1.2   0.1      0.67     8e+02     133     150 ..     151     168 ..     123     190 .. 0.68
   3 ?    4.9   0.0      0.01        12     341     369 ..     352     381 ..     343     387 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00028
                EEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithk 31
                  +iG+G +G+ +A+++a  G +vl+i h 
  EGE23875.1  7 TLIIGAGASGLFCAFNTAAYGKSVLIIDHA 36
                579**********************99554 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.67
                 ETTS-EEEECEEEE--TT CS
        GIDA 133 tedgetikakavviatGt 150
                  ++ ++i+a+a viatG 
  EGE23875.1 151 DNRIKVIQAHALVIATGG 168
                 3444678899******97 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.01
                 E-GGGB-T.TSBBSSSBTEEE-CGGGTB-S CS
        GIDA 341 vdprqlln.tLetkkvkgLflAGqinGteG 369
                 vd++++   t+e++++++L++ G++  + G
  EGE23875.1 352 VDTHDISGkTMESRRQPNLYFIGEVLDVAG 381
                 666777766**************9866555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00021      0.25      18      54 ..       5      40 ..       2      57 .. 0.81
   2 ?    1.3   0.1      0.14   1.7e+02      85     128 ..      95     139 ..      81     168 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS-- CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspG 54
                 D +i+GaG+sGL +a+  a   +  v+i+++    G
  EGE23875.1  5 VDTLIIGAGASGLFCAFNTAAY-GKSVLIIDHANKAG 40
                799***************9999.88999998765555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.14
                 EEESS.EEEESEHHHHHHHHHHHHHTSTTEEEEESEEEEEEEEET CS
        Thi4  85 edegd.yvvvkdaalftstllskvlqlanvkllnavaveDlivre 128
                 +++++  ++ k++a+ +  +l + +++a+v +   ++v D+   +
  EGE23875.1  95 QEREHgQLFCKNSAKDILSMLLNECHMAGVDIHLKTTVQDIQATD 139
                 443331467788888888888888999************998777 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00068      0.81      31      77 ..       7      53 ..       4      96 .. 0.81
   2 ?    0.5   0.1      0.25     3e+02      63      98 ..     131     166 ..     106     174 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00068
                 EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvev 77
                 +l+iG+G  Gl  + + ++ g +V ++D   ++ +++   g+  ++ 
   EGE23875.1  7 TLIIGAGASGLFCAFNTAAYGKSVLIIDHANKAGKKILMSGGGRCNF 53
                 79**************************9877766665544333555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.25
                  HHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE- CS
  AlaDh_PNT_C  63 rleqleslgakfvevlksqeellaeavkeadvvigt 98 
                  + + +++   +f+ ++ksq ++  + ++   +vi t
   EGE23875.1 131 TVQDIQATDTHFLVTVKSQPDNRIKVIQAHALVIAT 166
                  334455588889999******************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.37
# Mc/sec: 3303.30
//
Query:       EGE23876.1  [L=989]
Description: peptidase M16 inactive domain protein McmA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-54  184.4   1.7    2.9e-54  183.9   1.7    1.2  1  M16C_assoc       Peptidase M16C associated
    7.7e-19   68.4   0.1    3.1e-14   53.4   0.0    3.2  3  Peptidase_M16_C  Peptidase M16 inactive domain
    5.2e-08   33.0   1.2    1.8e-06   28.0   0.0    2.6  2  Peptidase_M16    Insulinase (Peptidase family M16)
  ------ inclusion threshold ------
      0.037   13.1   0.7      0.066   12.3   0.7    1.3  1  FANCI_S4         FANCI solenoid 4
      0.085   13.2   0.1       0.27   11.6   0.1    1.8  1  DUF4378          Domain of unknown function (DUF4378)


Domain annotation for each model (and alignments):
>> M16C_assoc  Peptidase M16C associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   1.7     8e-58   2.9e-54       1     249 [.     463     714 ..     463     716 .. 0.93

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 8e-58
  M16C_assoc   1 lkPdeeleeekekeekerLaakkaslseeekekiveetkeLkerQekpdsedlscLPtLkleDIprei..teleeek.eve..idgvkvllhevpTNgi 94 
                 l+ d++ ++++ +ee++ La    +ls+++k+++  ++++Lk+rQ++p  +d+s+LP++ leDIp e+  t  +  k + +   + ++v+l+++ TNg+
  EGE23876.1 463 LSADTKKAARLVDEENQALATLDTTLSDDDKQNLLTQAAQLKARQAAP--DDVSILPKVGLEDIPSEVafT--KGIKtTLSldGETYPVHLYHTGTNGL 557
                 5678999*****************************************..******************552..3333322245899************* PP

  M16C_assoc  95 vYfrllfdlsd.lpeell..pylpLftdvltelgtkkkdyeeleqeiklktGGisasvsvssspedldkyeegfvlsgkaLdrnvekmfeLlreillet 190
                 +Y++++  l d + +e +  p+lpL+ ++l e+gt+++d + ++  ++ ++ G++a++s +++ +d ++ +++fv+ + aL+r++e++ eL++e+++et
  EGE23876.1 558 YYYQVITPLTDkVADEVInnPLLPLYLTLLSEVGTNNYDARTFQAVQASHSSGVTARISQRTQLTDKESLSSYFVVATRALNRKLEAI-ELVSEVMNET 655
                 *********988***985449****************************************************************976.********** PP

  M16C_assoc 191 kfddkerlkelvkesksrlensiassGhsyAmsraasslspaaalseqlsGlsqlkflk 249
                  f++++r++el+++++s++++++as+Gh+yAm+ a+s++s++a+++   sGl  l +lk
  EGE23876.1 656 VFSETDRIRELLQQKQSSWQARLASAGHAYAMQTASSRMSRQARIEYAYSGLPALVALK 714
                 ****************************************************9988877 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   8.7e-18   3.1e-14       1     181 [.     199     387 ..     199     389 .. 0.85
   2 ?   -2.6   0.0       1.3   4.7e+03      34      90 ..     445     506 ..     441     514 .. 0.50
   3 !   11.5   0.0   6.2e-05      0.22      81     179 ..     812     902 ..     738     906 .. 0.79

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 8.7e-18
                      CH-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHH....HHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEES......SSSSEEEEEE CS
  Peptidase_M16_C   1 sltredlkefykkfYrpenmvlaivGdvdheelvklie....kyfgdlkaskappakptgepltpatlkkppvvlkkl......deeqahlsla 84 
                      ++t edl +f++++Y+p+n+ +  +G++  +e+++ i      +f d+++    pa+ ++++  ++++  +p+ + ++      d + +h  la
       EGE23876.1 199 KMTHEDLVAFHQTHYHPSNAIIMSFGNIAVDEIQAKIHdealSHFDDIQK----PAQGKKFTSVVEKPLSQPIQVYDTysadsdDKQMTHHVLA 288
                      5799******************************9999877789999997....555555555555888888888888899997669******* PP

                      EEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTS..ESEEEEEEEEESSCEEEEEEEEEECT.THHHHHHHHHHHHHHHHHHTS-HHH CS
  Peptidase_M16_C  85 fegpskendeddlalavlntlLgggmesrLytnlrekegl..aysvsafndsyrdsglfgisatadpe.nveevvevilkelrklkkeglteee 175
                      +++p +++++  l l +++ +L +   s+L   l  ++ l  a s  +++d    + +f+ ++ +    ++e +++ il+ l++++++ +++e 
       EGE23876.1 289 WLLPTITDPRLRLSLRLMEGVLAEHSGSPLRAYLE-SHPLavAPSPLLGLDDSHYQMVFYAGVRGSEPeHAEALEKGILALLNQIADNPISQEV 381
                      ******************************99999.****77777777766556677787777654445***********************98 PP

                      HHHHHH CS
  Peptidase_M16_C 176 lerakn 181
                      +e + +
       EGE23876.1 382 IETILH 387
                      887665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
                      HHHHHHHHTTSTHHSH......CSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECT CS
  Peptidase_M16_C  34 vkliekyfgdlkaska......ppakptgepltpatlkkppvvlkkldeeqahlslafegpsk 90 
                      ++li++y+ d++++         +   + ++ + + l + +  l ++d +q+ l+ a +++++
       EGE23876.1 445 QNLIRQYLIDNPHRVRltlsadTKKAARLVDEENQALATLDTTLSDDD-KQNLLTQAAQLKAR 506
                      566666666666543344444433333333344444444444444445.55555555555555 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 6.2e-05
                      EEEEEEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HH CS
  Peptidase_M16_C  81 lslafegpskendeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkegltee 174
                      ++ a+++     +ed  al+vl+  L +g    L  ++r ++g ay+ +a++ds+     f ++ + dp+  +++ + + k ++ l +++ + e
       EGE23876.1 812 NAAAYQATTS-EHEDTPALMVLAPFLRNG---YLHGAIR-EKGGAYGSGASFDSNA--AAFRFYSYRDPH-CAKTFAHFDKSIDWLLQTKHDTE 897
                      3445555555.9*****************...*******.9999*********888..999999999988.77777778877777777766666 PP

                      HHHHH CS
  Peptidase_M16_C 175 elera 179
                       l +a
       EGE23876.1 898 QLHEA 902
                      66665 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   5.1e-10   1.8e-06      26     118 ..      54     147 ..      46     171 .. 0.82
   2 ?    2.3   0.8     0.041   1.5e+02      44     138 ..     591     689 ..     583     697 .. 0.61

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 5.1e-10
                    SCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHH.TTCEEEEEEESSEEEEEEEEEGGG.HHHHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHH CS
  Peptidase_M16  26 epkdlnGlAHllehmafkgTkkyps.nklaeelek.lGgslnAttsrentvYyvevlskd.lekaldvladvfkaplleesevererkvvekevea 118
                     p   +G AH+leh ++ g++kyp  + + +++++ l+  +nA t  + tvY + +++k+ + ++l v  d +  p + + ++ +  + v+ e+++
     EGE23876.1  54 QPMTSRGEAHILEHVVLCGSQKYPVrDPFFSMIKRsLNTFMNAMTASDWTVYPFASQNKKdFFNLLSVYLDAVFFPNIHPLDFAQ--EGVRVEINQ 147
                    566789*******************999***9987256666***********999988777********************9999..555555554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.041
                    BBSSSCHHHHHHHHHHTTCEE.......EEEEESSEEEEEEEEEGGGHH...HHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH CS
  Peptidase_M16  44 gTkkypsnklaeeleklGgsl.......nAttsrentvYyvevlskdle...kaldvladvfkaplleesevererkvvekeveavdaepekvvee 129
                    gT++y+++ + ++ +++   +          t++e  + y+ v++ +l+   +a+++ ++v++++ ++e +  r      + +++ ++ +++++  
     EGE23876.1 591 GTNNYDARTFQAVQASHSSGVtarisqrTQLTDKESLSSYFVVATRALNrklEAIELVSEVMNETVFSETDRIR------ELLQQKQSSWQARLAS 680
                    66777776666666666666611222222234444444444455555441115677889999999998766555......6777788888888888 PP

                    HHHHHHTTT CS
  Peptidase_M16 130 nlhaaayre 138
                    + ha a++ 
     EGE23876.1 681 AGHAYAMQT 689
                    888888874 PP

>> FANCI_S4  FANCI solenoid 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.7   1.8e-05     0.066      38     157 ..     647     767 ..     613     777 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
    FANCI_S4  38 svlslllsalekvledvewlikklkaelaseklae....essqsevkdelkerekslcsqlgtlvevlseLvqtalppgsavesllklltklYtlLtnl 132
                  v +++ +++ +  ++++ l+++ +++++++ ++       ++ + +  +++r +  +s l +lv   s L++++  + s +++l+  l++l ++L +l
  EGE23876.1 647 LVSEVMNETVFSETDRIRELLQQKQSSWQARLASAghayAMQTASSRMSRQARIEYAYSGLPALVALKSFLASAQADD-SLWDTLCHRLSELHQTLISL 744
                 566777788889999999999999999999988886666444455557888888889*****9997766666666655.556***************** PP

    FANCI_S4 133 tKyyiaivtskqglisakFekLvkl 157
                  K+++ ++++  ++ ++ ++++ k 
  EGE23876.1 745 PKQVLLVCEE--QVSPDLLDEISKH 767
                 ********99..4455555555555 PP

>> DUF4378  Domain of unknown function (DUF4378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   7.5e-05      0.27      32      74 ..     755     796 ..     728     826 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-05
     DUF4378  32 pidpslfeeleekkssssekkrreerserklLFDlvneiLaei 74 
                  ++p+l++e+ +  s ++++ +  ++  +kl+FD  +e+L + 
  EGE23876.1 755 QVSPDLLDEISKHIS-TKKTPAPSQKVSQKLVFDTLDELLCQQ 796
                 589******998775.466666899***************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 6700.43
//
Query:       EGE23877.1  [L=149]
Description: universal stress family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-16   59.5   0.6    5.8e-16   59.3   0.6    1.1  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.6   3.3e-20   5.8e-16       1     140 [.       1     144 [.       1     145 [. 0.92

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 3.3e-20
                 S-SEEEEEE-SSHHHHHHHHHHHH.HHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH...HHHHHHCTTCEEEEEEEESSHHHHH CS
         Usp   1 mykrIlVavDgseeskkAlewAle.lakargaelillhvidprasgavsdadeeaeeeeleleeaeleada...akaaaeaggvkvevvveegdpaeei 95 
                 my+++l+++D  ++++ ++++A + l  +++a+l +lh++++   g   ++ ++++ +e+ + e+ + a     +  a++  +++   + +  +++ +i
  EGE23877.1   1 MYQHVLLVTDLKDDTDLVAQKAKWiLDLQPQAQLSVLHIVEETMLGFGYELIPASALHEHIDDERCQTARIrlaDVLARNHLQAHHINIKTAISGRKGI 99 
                 9***********************66666******************************9999987766669977777777888888888889999*** PP

                 HHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEE CS
         Usp  96 levaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvV 140
                 +++ +++ +dl+V+G+++r+gls  + G +++++l   + ++lvV
  EGE23877.1 100 VDYCQAHAVDLVVIGRHKRTGLSAWIAGATADSILPDIDSDLLVV 144
                 ***************************************999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1104.57
//
Query:       EGE23878.1  [L=339]
Description: PfkB family carbohydrate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-47  160.7   4.0    6.7e-47  160.3   4.0    1.1  1  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.3   4.0   3.7e-51   6.7e-47      32     298 ..      57     324 ..      33     327 .. 0.90

  Alignments for each domain:
  == domain 1  score: 160.3 bits;  conditional E-value: 3.7e-51
                 EEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESS.SEEEEEEEEETTTSEEEEEEEEGGGGGHHHHHHHHHHHHHGC CS
        PfkB  32 eksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkided.trtglalivvdedgertivfnrgaaadltkeeleededllee 129
                 ++  GG++aN++va a lg+++++ ++vG+D+ G+f+l  l+  gv td ++ ++    tg ++++v+ d+ert+ +++g ++++ +++   + + l+ 
  EGE23878.1  57 KQAGGGSAANSMVAFAALGGRAYYHCRVGGDDMGDFYLGDLANLGVATDATYAVQAdGTTGSCVVLVTPDAERTMQTHLGTSSEINTDNI--NFQTLKD 153
                 56779*******************************************987755444******************************986..******* PP

                 TSEEEEES.EECTTSHHHHHHHHHHHHHHTTE.EEEEECESSSHH.HHHHHHHHH.CTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEE CS
        PfkB 130 adllyisg.llsselpeavleelaeaaknggt.fdpnlldplgaq.fkeallell.aladllkpneeElealtgekledieealaalhklkakgaktvv 224
                 a++ly++g l  s++ +++l +l e a++ g+ +   + dp+  + +ke l+++l +++d++++n+eE++ ++++++   ++ ++ l k    + ++vv
  EGE23878.1 154 AKWLYLEGyLAMSPSATDALSQLYEHARKTGAkVAVSFADPAVVKfAKEGLSAILnRGVDAIFCNAEEAALFADADG--DADPVNTLLK----YSDLVV 246
                 *********8888888888888887777777779999******99*******************************4..5555555555....789*** PP

                 EEEGGGEEEEEE....TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSSTC CS
        PfkB 225 vtlGkeGalvve....kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkgaias 298
                 +t + +++ ++     +  e++++++   +v+Dt+GAGD ++g+fl++l+++ +l  + r+a+avAa+vv + g++ s
  EGE23878.1 247 ITNSDKPTTIACriddRIIEHHIDSCVVSQVIDTNGAGDNYAGAFLYGLSQNLDLPNCGRLASAVAAAVVGQFGPRLS 324
                 *******99998887777899****************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2633.72
//
Query:       EGE23879.1  [L=203]
Description: nifU-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-19   70.0   0.3    2.2e-19   69.4   0.3    1.3  1  NifU         NifU-like domain
    7.5e-12   45.4   0.0    1.6e-11   44.4   0.0    1.5  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> NifU  NifU-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.3   2.5e-23   2.2e-19       1      67 []     119     189 ..     119     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 2.5e-23
                 HHHHHHH.HGGG--GG--EEEEEEEETT....EEEEEEESGGGG-....THHHHHHHHHHHHH-TT--EEE CS
        NifU   1 ieevleeeirPaLasdGGdielvdvdeg....vVkvrlqGaCsgCpsstvtlkegiekaLkeevpevkeVe 67 
                 i+ vl++ei+P Las+GG+++l++v e+    +  +++ G+C+gC++ +vtl++g+e +Lk+++pe ++V+
  EGE23879.1 119 INYVLQSEINPNLASHGGSVDLLEVIEDeaglTAVLKFGGGCQGCSAVDVTLRQGVEVQLKQQIPELTQVV 189
                 789*********************9666699*************************************996 PP

>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   1.7e-15   1.6e-11       2     103 ..       8     104 ..       7     107 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 1.7e-15
                  EEEE-HHHHHHHHHHHHCTTEC...EEEEEECCTSCCGGS.TT.EEEEEEEEESSTS.TTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEE CS
  Fe-S_biosyn   2 kitlteaAaeklkkllaedkke...lrLdvddgggpyskggCsiggkyslvlvdeed.eeydevlesnggkvyvksyslvfldeglvldfvedlgtlg 95 
                  +i++te A+e+l +lla++++e   +r++v++ g+p  + +C+        +  +++ ++ d +++ ++++ +++ +s ++l ++ v+d+++d+++ +
   EGE23879.1   8 NIKITEPAQEYLADLLAKQEEEgigVRIFVEHAGTPRAE-CCM-------SYCHADEiDDQDLHIDYAKFTAHIDADSIPYL-HDAVIDYNKDRFGGQ 96 
                  69******************99***********944444.554.......444444449***********************.99************* PP

                  EEEETCCE CS
  Fe-S_biosyn  96 Lksdngil 103
                  L++ +++ 
   EGE23879.1  97 LTFRAPNS 104
                  *****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1631.87
//
Query:       EGE23880.1  [L=57]
Description: hypothetical protein EA1_07790 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 503.16
//
Query:       EGE23881.1  [L=342]
Description: bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-14   54.5   0.0    2.2e-14   53.6   0.0    1.4  1  NUDIX            NUDIX domain
    7.6e-09   35.9   0.5    2.4e-08   34.3   0.5    2.0  1  CTP_transf_like  Cytidylyltransferase-like
    0.00045   19.5   2.1      0.021   14.1   0.2    2.2  2  HIGH_NTase1      HIGH Nucleotidyl Transferase
    0.00063   19.7   0.1     0.0014   18.6   0.1    1.6  1  FAD_syn          FAD synthetase
  ------ inclusion threshold ------
      0.035   13.8   0.0       0.12   12.1   0.0    1.9  2  Citrate_ly_lig   Citrate lyase ligase C-terminal domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   6.2e-18   2.2e-14      12     126 ..     217     334 ..     209     339 .. 0.68

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 6.2e-18
                 ETTSEEEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEE..EEEEEEEEEEEEEEEEEE...EEEEEEEEEEEECSGCSST..STT CS
       NUDIX  12 nekgevLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaell..ellgrlhylapydgpygd...eheilyvfleevegelepn..den 102
                 +  g++Ll++r + + +g ++lPgG+v+ +E++ +A++RE+ EEt+l+  ll   l++ +   ap +    +   ++  +++++e ++ +  p+  + +
  EGE23881.1 217 Q-SGHILLIERGGEYGQGlYALPGGFVDTNEDFYQACLREVHEETNLDISLLknSLITATLFDAPKR----SqraRTVTMVYYFELPKQQTLPDvqAGD 310
                 3.446*******999999789*************************977555444444333333333....2344444445555444444444546777 PP

                 TEEEEEEEEHHHHHHHHTHCTHHH CS
       NUDIX 103 evsevrwvpleellkeklaaesrk 126
                 +   + w+pl el++ ++ ++++ 
  EGE23881.1 311 DANRAFWLPLSELNAVQMFEDHYG 334
                 777788*******66555555555 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.5   6.7e-12   2.4e-08       1      58 [.      11      66 ..      11     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 6.7e-12
                     EEEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHH CS
  CTP_transf_like  1 lagGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlela 58
                     ++ G+F p+H GH  ++ qa+++  + +iv++ s+++p+   k+++  +eR +m+   
       EGE23881.1 11 IFIGRFEPFHQGHHYVITQALAHARQ-VIVLMGSANSPRTI-KNPFHPDERQAMILNS 66
                     699***********************.************87.9999999**9998665 PP

>> HIGH_NTase1  HIGH Nucleotidyl Transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   5.7e-06     0.021      10      38 ..      16      42 ..      11      48 .. 0.83
   2 !    4.9   0.1    0.0036        13     199     255 ..     136     195 ..     128     204 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.7e-06
  HIGH_NTase1 10 YNPfHnGHlyhlekakeltgadvviavmS 38
                 + PfH+GH y +++a    +a  vi++m 
   EGE23881.1 16 FEPFHQGHHYVITQALA--HARQVIVLMG 42
                 89***********9987..5778888884 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0036
  HIGH_NTase1 199 eeeeiaSAtaiRkal.keek.kleelkklvPestleilkeelkkk.aslsledlskllky 255
                  ++ e+ SAt iR+a+  +++ k+++  +++ ++++e+l+   ++k ++  +++++++  y
   EGE23881.1 136 KNFEYISATPIREAYfGDDSaKKQASFSQLTKACVEFLTAFEHTKaYHRLKQEYQHIQAY 195
                  45689**********533333444466778888888887664444333344555555555 PP

>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   3.8e-07    0.0014       7      70 ..       8      72 ..       2      90 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.8e-07
     FAD_syn  7 gavvtlGnFDGvHlGHqallkkaveaakekglpsvvvtFephPrevla...kekapar.Lttleekle 70
                +  + +G F  +H+GH+ ++++a+++a++    +v++   ++Pr++ +   +++ +a  L++ ++k +
  EGE23881.1  8 DYLIFIGRFEPFHQGHHYVITQALAHARQ---VIVLMGSANSPRTIKNpfhPDERQAMiLNSFDKKNR 72
                66789******************999965...456777788888887744456666665777777753 PP

>> Citrate_ly_lig  Citrate lyase ligase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.3e-05      0.12       9      50 ..      17      63 ..      12      79 .. 0.75
   2 ?   -2.9   0.0       1.3   4.7e+03     151     166 ..     139     154 ..     134     166 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.3e-05
  Citrate_ly_lig  9 nPftlGhryLvekaakendvvhlfvvkedk.....slfsyeerlklv 50
                     Pf +Gh+y++ +a +++  v++ + + ++     + f  +er +++
      EGE23881.1 17 EPFHQGHHYVITQALAHARQVIVLMGSANSprtikNPFHPDERQAMI 63
                    6*********************9998876511111345556666666 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
  Citrate_ly_lig 151 elisaskvrkllkekn 166
                     e isa+ +r+++   +
      EGE23881.1 139 EYISATPIREAYFGDD 154
                     6788888888775444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2853.28
//
Query:       EGE23882.1  [L=447]
Description: putative pyridine nucleotide-disulfide oxidoreductase YkgC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-58  198.2   1.8    2.3e-58  197.8   1.8    1.1  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      3e-30  104.7   0.1      1e-29  103.0   0.1    1.9  1  Pyr_redox_dim    Pyridine nucleotide-disulphide oxidoreductas
    2.4e-20   72.9   2.0    1.6e-16   60.6   0.2    2.8  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      2e-12   47.0   0.9    2.7e-10   40.0   0.1    2.2  2  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    4.7e-07   29.9   5.1    0.00022   21.2   0.2    2.9  3  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    2.5e-06   27.9   0.9     0.0071   16.8   0.1    2.7  2  NAD_binding_7    Putative NAD(P)-binding
    3.6e-06   26.4   1.2      0.049   13.0   0.1    2.7  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    5.3e-06   25.4   4.5      0.035   12.8   0.3    3.3  3  HI0933_like      HI0933-like protein
    1.2e-05   24.7   0.4     0.0011   18.3   0.1    2.3  2  FAD_binding_3    FAD binding domain
    0.00011   21.9   0.2       0.11   12.1   0.0    2.6  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
    0.00013   21.7   3.6       0.43   10.1   0.7    3.2  3  DAO              FAD dependent oxidoreductase
    0.00019   21.7   2.8     0.0031   17.7   0.0    3.6  3  TrkA_N           TrkA-N domain
    0.00019   20.7  13.3     0.0096   15.0   0.3    4.3  4  GIDA             Glucose inhibited division protein A
    0.00077   18.8   1.0      0.059   12.7   0.2    2.6  2  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    0.00081   19.6   2.5       0.07   13.4   0.1    2.7  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
     0.0017   17.5   5.0       0.18   10.8   0.1    3.9  4  Lycopene_cycl    Lycopene cyclase protein
     0.0024   18.4   0.2        3.1    8.3   0.0    2.4  2  XdhC_C           XdhC Rossmann domain
  ------ inclusion threshold ------
      0.011   14.9   0.7       0.32   10.2   0.0    2.9  3  Thi4             Thi4 family
      0.012   14.7   0.4      0.012   14.7   0.4    3.2  4  FAD_binding_2    FAD binding domain
      0.021   14.4   0.3      0.088   12.5   0.1    2.1  2  ApbA             Ketopantoate reductase PanE/ApbA
      0.034   14.7   0.2      0.034   14.7   0.2    2.7  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.084   13.1   2.4        4.2    7.7   0.0    3.2  3  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.099   12.7   0.2        4.4    7.4   0.0    2.5  2  Importin_rep_3   Importin 13 repeat
       0.18   11.9   3.6        3.1    7.8   0.0    3.6  4  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   1.8     3e-61   2.3e-58       3     286 ..      12     306 ..      10     313 .. 0.91

  Alignments for each domain:
  == domain 1  score: 197.8 bits;  conditional E-value: 3e-61
                  EEEE--SHHHHHHHHHHHHHTS-EEEEE.....TTHCHHHCSHHHHCHHHHHHHHHHHHH........HHHHCHHHH.CCCCHCCTCEEEEESCEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaqagakvtlve.....legtclnggcllskallgvaedaeias........evvkklnqg.ielllgeevvkidpgkkkvk 86 
                   ++iG G AG ++a+tla+ag +v+lve      +gtc n gc++sk+l+  ++++++ +        + + klnq  ++++++    ++++g++ + 
   EGE23882.1  12 HLIIGFGKAGKTLAQTLAKAGKEVILVEksadmYGGTCINIGCIPSKKLAFLSHERDVSLsdaiarknQLIAKLNQAnFDKVNELDNATVITGEASFI 109
                  68*************************99999************************9999*9999998666666666677777766666668888888 PP

                  ETEEEC....TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTT CS
                  xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  87 lekkke....gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllra 180
                  + k+++    +d+ ki++d++ + tG+ +  ++i+G+++  +    + ds+  ++l +lpk++v++GgGyiG+E+A  +a +g+ vt++e +d++l++
   EGE23882.1 110 DDKTVQvvtaDDTLKITADHIHINTGAYNWQPPIDGLKDSKF----AHDSTSIMQLTQLPKQLVIIGGGYIGLEFAFIFAGFGSVVTILETADTFLPK 203
                  88888899999**************************66664....57************************************************** PP

                  S-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TTSBESSTTEEE-GG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 181 ldkelsaaleealekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrpstelle.eklglelderggivvdeflrtnvpgiyaiGD 276
                   d ++++ l   + ++ ++vk+++++k++++ ++ +  vv+edge + ad ++va+G+r++t++l+ +k+g+ l+++g i v+++l+t+vp+iya GD
   EGE23882.1 204 EDADIRQNLLGIMANKQITVKTKQQIKQVNDANN-HAmVVTEDGE-LMADAILVATGRRANTQGLDlDKAGVILTDKGNIAVNDRLQTSVPHIYAMGD 299
                  ******************************9998.5536666665.9*************************************************** PP

                  GCTECCSS-- CS
                  xxxxxxxxxx RF
  Pyr_redox_2 277 vaggkggpel 286
                  va   g+p+ 
   EGE23882.1 300 VA---GSPQF 306
                  **...77665 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.1   1.4e-32     1e-29       3     108 ..     336     441 ..     334     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 1.4e-32
                    EEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSBSS CS
  Pyr_redox_dim   3 tvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladtihi 98 
                     +vft+p++a vG+te+ Ak++g+++k++ ++  ++ +a++ ++t+g++K v+dakt+k+lG+++++++a+eli+ + +ai++glt +++ d i++
     EGE23882.1 336 YAVFTNPPLANVGMTEQVAKEQGHAVKTAVLEAVNIPKAKILEQTDGLLKAVIDAKTDKILGVQLLCDNAHELINFMDLAIRQGLTYQEVRDYIFT 431
                    689********************************************************************************************* PP

                    SSSTGGGGHC CS
  Pyr_redox_dim  99 hPtlsealke 108
                    hPt+seal+e
     EGE23882.1 432 HPTMSEALNE 441
                    *******987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1    0.0007      0.52       3      33 ..      13      43 ..      11      48 .. 0.91
   2 !   60.6   0.2   2.2e-19   1.6e-16       2      79 ..     168     244 ..     167     246 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0007
                EEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  3 vvvGgGyiglElAgalaelgkkVtvversdk 33
                +++G G  g  lA++la+ gk+V +ve s  
  EGE23882.1 13 LIIGFGKAGKTLAQTLAKAGKEVILVEKSAD 43
                79*************************9865 PP

  == domain 2  score: 60.6 bits;  conditional E-value: 2.2e-19
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvklk 79 
                 +v++GgGyiglE+A ++a +g+ Vt++e +d++l+++D++++++l   + ++ i+v +++++++++  ++    v+++
  EGE23882.1 168 LVIIGGGYIGLEFAFIFAGFGSVVTILETADTFLPKEDADIRQNLLGIMANKQITVKTKQQIKQVNDANNH-AMVVTE 244
                 79****************************************************************77765.335555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.011       8.5     158     197 ..       3      42 ..       1      48 [. 0.79
   2 !   40.0   0.1   3.7e-13   2.7e-10     114     305 .]     115     298 ..     106     298 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.011
  Pyr_redox_3 158 efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgs 197
                  + h++++++ ++iG +  +   A  l+++g+eV +v +++
   EGE23882.1   3 HSHNIRHTEHLIIGFGKAGKTLAQTLAKAGKEVILVEKSA 42 
                  5677888888888888888888888888888888887765 PP

  == domain 2  score: 40.0 bits;  conditional E-value: 3.7e-13
  Pyr_redox_3 114 fevetske.tyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkya..gqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsy 208
                   +v+++   +++A+++ i tG ++   ++ i G +  +k  +  +++++++   +++v+iGg+  + + A+ ++  g+ Vt++   ++   +e     
   EGE23882.1 115 QVVTADDTlKITADHIHINTGAYNW--QPPIDGLK-DSKFAHDSTSIMQLTqlPKQLVIIGGGYIGLEFAFIFAGFGSVVTILETADTFLPKE----- 204
                  34444444799***********975..56789988.566666666776666346899**************************9998766665..... PP

  Pyr_redox_3 209 slkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkk..slfeldedgrpvlteeteetnvpglfla 304
                     +di+++l  ++++++i+v +++++k++++ +++  v tedg+ +   d +++atG + +++ l+   +++ l+++g +++++   +t vp ++ +
   EGE23882.1 205 --DADIRQNLLGIMANKQITVKTKQQIKQVNDANNHAMVVTEDGELM--ADAILVATGRRANTQGLDLdkAGVILTDKGNIAVNDRL-QTSVPHIYAM 297
                  ..789***********9**************************9653..5788999******9986544499999999**9999875.678*****98 PP

  Pyr_redox_3 305 G 305
                  G
   EGE23882.1 298 G 298
                  8 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.2   0.00092      0.69       4      33 ..      14      43 ..      13      53 .. 0.93
   2 !   21.2   0.2   2.9e-07   0.00022       2      76 ..     168     241 ..     167     255 .. 0.84
   3 ?   -1.9   0.0       3.6   2.7e+03      65     107 ..     345     385 ..     330     403 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00092
                EE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N  4 viGaGtmGagiaavfasagleVvlvdisee 33
                +iG G  G+ +a+ +a+ag eV lv+ s++
  EGE23882.1 14 IIGFGKAGKTLAQTLAKAGKEVILVEKSAD 43
                89***********************99887 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.9e-07
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleea 76 
                 + +iG G +G + a +fa  g  V+++++++ +l k  + i+++l   +++++++  ++++++++++ +++ + +
  EGE23882.1 168 LVIIGGGYIGLEFAFIFAGFGSVVTILETADTFLPKEDADIRQNLLGIMANKQIT-VKTKQQIKQVNDANNHAMV 241
                 579*************************************************999.6666677777655555444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.6
                 HCEEEES-HHHHHC-SEEEE-S-SSHHH.HHHHHHHHHCCS-TT CS
     3HCDH_N  65 arisfttdleeavdadlviEavvEnlel.Krkvfaelekiakpd 107
                 a++ +t+++++  +   v  av E +++ K+k++++ + ++  +
  EGE23882.1 345 ANVGMTEQVAKE-QGHAVKTAVLEAVNIpKAKILEQTDGLL--K 385
                 555556665555.4455667777777766778888877776..3 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   9.5e-06    0.0071       3      40 ..       5      42 ..       4     123 .. 0.71
   2 !    9.0   0.1    0.0026       1.9       8      72 ..     166     246 ..     159     286 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.5e-06
  NAD_binding_7  3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapev 40
                   ++++  + l++G G+ + + +++l++ag++v++v +  
     EGE23882.1  5 HNIRHTEHLIIGFGKAGKTLAQTLAKAGKEVILVEKSA 42
                   789999****************************9885 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0026
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapevkeele................elvklaeeelekdlegad.lviaatddr 72 
                    k+ +++GgG ++++ +  ++ +g  vt++  +   +l+                ++++++ ++  k++++a   ++++t+d 
     EGE23882.1 166 KQLVIIGGGYIGLEFAFIFAGFGSVVTILETAD-TFLPkedadirqnllgimanKQITVKTKQQIKQVNDANnHAMVVTEDG 246
                    7899************************88774.333334455667777666665555554443333333222333333333 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   6.6e-05     0.049      30      68 ..       3      41 ..       1      46 [. 0.90
   2 !   11.5   0.0   0.00019      0.14      35      68 ..     164     197 ..     143     267 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.6e-05
                  SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSS CS
  2-Hacid_dh_C 30 lgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrs 68
                  +++++++ +  iiG+G+ G+++a++l++ g +vi +++s
    EGE23882.1  3 HSHNIRHTEHLIIGFGKAGKTLAQTLAKAGKEVILVEKS 41
                  5788999999************************99877 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00019
                   TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSS CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgmkviaydrs 68 
                     k++ iiG G IG ++a ++++fg  v++ ++ 
    EGE23882.1 164 LPKQLVIIGGGYIGLEFAFIFAGFGSVVTILETA 197
                   45899********************999887765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00075      0.56       4      33 ..      13      42 ..      10      89 .. 0.91
   2 ?    4.2   0.1     0.019        14       2      38 ..     167     203 ..     166     204 .. 0.91
   3 !   12.8   0.3   4.6e-05     0.035     109     165 ..     206     260 ..     202     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00075
                 EEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  4 iviGgGaAGlmaAisaakrgkrVlllekak 33
                 ++iG G AG   A ++ak+gk+V+l+ek  
   EGE23882.1 13 LIIGFGKAGKTLAQTLAKAGKEVILVEKSA 42
                 79*************************986 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.019
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrK 38 
                  ++++iGgG  Gl  A   a  g+ V++le a++++ K
   EGE23882.1 167 QLVIIGGGYIGLEFAFIFAGFGSVVTILETADTFLPK 203
                  689**************************99988755 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 4.6e-05
                  HHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 109 edivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGl 165
                  +di + ll  + ++++++++++++k+v+  +++  +v t +++el ad++++AtG  
   EGE23882.1 206 ADIRQNLLGIMANKQITVKTKQQIKQVNDANNH-AMVVT-EDGELMADAILVATGRR 260
                  57888999999****************776666.66666.79************965 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.4e-06    0.0011       2      36 ..      10      44 ..       9      48 .. 0.91
   2 ?    4.5   0.0     0.023        18       4      45 ..     168     209 ..     166     265 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrstt 36
                   t+ lI+G G aG +la+ L++aG +v+lvek ++ 
     EGE23882.1 10 TEHLIIGFGKAGKTLAQTLAKAGKEVILVEKSADM 44
                   6779***************************9875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.023
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EE CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradgl 45 
                     +I+G+G  Gl  a + +  G  v+++e  +t  ++  ad+ 
     EGE23882.1 168 LVIIGGGYIGLEFAFIFAGFGSVVTILETADTFLPKEDADIR 209
                    57***************************9999998888764 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0043       3.2       5      32 ..      14      41 ..      11      46 .. 0.93
   2 !   12.1   0.0   0.00014      0.11       2      31 ..     167     196 ..     166     269 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0043
                    EE--STTHHHHHHHHHHCTSEEEEE-S- CS
  UDPG_MGDP_dh_N  5 viGlGYvGlvtaavlaeighevigvDid 32
                    +iG G  G + a  la++g+evi+v ++
      EGE23882.1 14 IIGFGKAGKTLAQTLAKAGKEVILVEKS 41
                    8************************876 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00014
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDi 31 
                     ++++iG GY+Gl  a ++a  g  v+++  
      EGE23882.1 167 QLVIIGGGYIGLEFAFIFAGFGSVVTILET 196
                     5789******************99998765 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0018       1.3       3      46 ..      13      57 ..      11     140 .. 0.73
   2 !   10.1   0.7   0.00058      0.43       2      30 ..     168     198 ..     167     201 .. 0.90
   3 ?    2.4   0.0      0.13        96     152     207 ..     212     265 ..     204     320 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0018
                EEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEES CS
         DAO  3 viiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhs 46
                +iiG G +G + A  La++g  V+l+ek+ +   g +  n g + s
  EGE23882.1 13 LIIGFGKAGKTLAQTLAKAGkeVILVEKSADMY-GGTCINIGCIPS 57
                7******************99*******97665.666666665544 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00058
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgd 30 
                 +viiGGG+iGl  A+  a  g  Vt+le +d
  EGE23882.1 168 LVIIGGGYIGLEFAFIFAGFGsvVTILETAD 198
                 69***************88889******875 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.13
                 HHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH.HH CS
         DAO 152 laraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd.ll 207
                 l+  ++++ +++ ++ +++ +++ ++ ++ v  t++ge   ada+ +a+G  ++ + 
  EGE23882.1 212 LLGIMANKQITVKTKQQIKQVNDANNHAMVV--TEDGELM-ADAILVATGRRANtQG 265
                 6667778888999999999986655666666..6657664.5********7766543 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.2e-06    0.0031       2      32 ..      13      43 ..      12      45 .. 0.89
   2 ?    0.5   0.2      0.91   6.8e+02       2      32 ..     169     199 ..     168     262 .. 0.80
   3 ?    0.7   0.0       0.8     6e+02      46      65 ..     357     376 ..     345     405 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.2e-06
                EEES-SHHHHHHHHHHHHTTEEEEEEESSHH CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkdee 32
                +iiG+G+ G++la++L ++gk+v++++k+ +
  EGE23882.1 13 LIIGFGKAGKTLAQTLAKAGKEVILVEKSAD 43
                69****************6667*****9865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.91
                 EEES-SHHHHHHHHHHHH.TTEEEEEEESSHH CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvvidkdee 32 
                 +iiG G +G + a  +   g+  v++ ++ + 
  EGE23882.1 169 VIIGGGYIGLEFAFIFAGfGS-VVTILETADT 199
                 799999999998888888555.4777776655 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.8
                 ES-TTSHHHHHHTTGGGESE CS
      TrkA_N  46 vgdatdeevLeeagiekada 65 
                 +g+a +++vLe+ +i ka++
  EGE23882.1 357 QGHAVKTAVLEAVNIPKAKI 376
                 6999999********99986 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   1.3e-05    0.0096       3      46 ..      13      60 ..      11      90 .. 0.84
   2 !    6.2   0.1    0.0061       4.5     103     160 ..      91     146 ..      74     163 .. 0.84
   3 ?    4.6   0.2     0.019        14       2      31 ..     168     196 ..     167     207 .. 0.85
   4 ?    1.7   0.3      0.14   1.1e+02     107     150 ..     217     259 ..     204     292 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
                EEE-SSHHHHHHHHHHHHTT--EEEE....ES-GGGTT--SSSSEEE- CS
        GIDA  3 iViGgGhAGceAAlaaarlGakvlLi....thkldtiaelsCnpsigg 46
                 +iG G AG   A ++a++G +v+L+     +  +t+++++C ps + 
  EGE23882.1 13 LIIGFGKAGKTLAQTLAKAGKEVILVeksaDMYGGTCINIGCIPSKKL 60
                59************************88777778899********876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0061
                 HHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-EEEETT CS
        GIDA 103 eklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkgkihige 160
                 +k+++ +n ++i++e++ +++  k+v++v+ +d  +i+a+++ i tG++  + ++ g 
  EGE23882.1  91 DKVNELDNATVITGEASFIDD--KTVQVVTADDTLKITADHIHINTGAYNWQPPIDGL 146
                 67889999***********55..99***********************8766655555 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.019
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithk 31 
                 +++iGgG  G+e A+  a  G  v+++ + 
  EGE23882.1 168 LVIIGGGYIGLEFAFIFAGFGSVVTIL-ET 196
                 69*******************999887.44 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.14
                 TSTTEEEEES.-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 107 nepnleiiee.eveeliveekkvkgvvtedgetikakavviatGt 150
                 +++++++ ++ +++++++  ++ + vvtedge + a+a+ +atG 
  EGE23882.1 217 ANKQITVKTKqQIKQVND-ANNHAMVVTEDGELM-ADAILVATGR 259
                 457777765415566644.577778888888766.6788889996 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.028        21      25      62 ..       6      43 ..       1      53 [. 0.89
   2 !   12.7   0.2   7.8e-05     0.059      28      82 ..     165     228 ..     152     268 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.028
                 CB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C 25 gvepakvlviGgGvaGlqAiatakglgakVtvlDvrpa 62
                  +++ + l+iG G aG   ++t ++ g +V +++++++
   EGE23882.1  6 NIRHTEHLIIGFGKAGKTLAQTLAKAGKEVILVEKSAD 43
                 5778999***********************99998765 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.8e-05
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEE........HCHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvev........lksqe 82 
                  p + ++iGgG  Gl+ + + +g+g +Vt+l++  + l + ++ + ++ + +        +++q+
   EGE23882.1 165 PKQLVIIGGGYIGLEFAFIFAGFGSVVTILETADTFLPKEDAdIRQNLLGImankqitvKTKQQ 228
                  56789**************************999887776666555544442222221133333 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   9.3e-05      0.07       1      35 [.      14      49 ..      14      52 .. 0.90
   2 ?    5.4   0.2     0.029        22       1      29 [.     170     198 ..     170     200 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.3e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS.SSGGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr.lGGra 35
                   I+G G +G ++A++Lakag++v l+ek+ +  GG +
     EGE23882.1 14 IIGFGKAGKTLAQTLAKAGKEVILVEKSADmYGGTC 49
                   8999***********************987577766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.029
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    I+G+G  Gl +A   a  g  v++le++d
     EGE23882.1 170 IIGGGYIGLEFAFIFAGFGSVVTILETAD 198
                    9***************9999*****9987 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00024      0.18       3      36 ..      13      44 ..      12      50 .. 0.92
   2 ?   -1.9   0.0       1.7   1.3e+03      85     141 ..      77     136 ..      65     144 .. 0.71
   3 ?    1.9   0.1      0.12        90       2      36 ..     168     200 ..     167     205 .. 0.86
   4 ?    4.3   0.1     0.023        17     104     146 ..     224     270 ..     204     391 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00024
  Lycopene_cycl  3 vviGaGpAglslAarlteakpglkvvlieaspsl 36
                   ++iG G Ag  lA+ l  ak+g +v+l+e s+++
     EGE23882.1 13 LIIGFGKAGKTLAQTL--AKAGKEVILVEKSADM 44
                   69**************..************9987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
  Lycopene_cycl  85 sskrlkeellerlvengvklleakvesveeeea..geslvvleggr.kirarlvvdargl 141
                    ++++l ++l++   ++  +l +a+v   e++      ++vv++++  ki a  +   +g+
     EGE23882.1  77 RKNQLIAKLNQANFDKVNELDNATVITGEASFIddKTVQVVTADDTlKITADHIHINTGA 136
                    566788888888888888888888887666543324567777777779988887777775 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.12
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    +v+iG+G  gl  A     a  g  v+++e+++  
     EGE23882.1 168 LVIIGGGYIGLEFAFIF--AGFGSVVTILETADTF 200
                    89************999..9999999999887765 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.023
  Lycopene_cycl 104 lleakvesveeeeageslvvleggrkirarlvvdarglaslk......k 146
                     ++ ++++v+++++ + +vv+e+g+ + a ++++a+g  +++      k
     EGE23882.1 224 KTKQQIKQVNDANN-HAMVVTEDGE-LMADAILVATGRRANTqgldldK 270
                    34556777777777.8888888885.78889999999443334455550 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0041       3.1       2      45 ..      13      98 ..      12     129 .. 0.68
   2 !    7.9   0.0    0.0055       4.1       1      63 [.     168     255 ..     168     274 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0041
                EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG........................................-GGG-TT-SE..- CS
      XdhC_C  2 vifGaghvaqalarlaaalgfrvtvvdpreefa........................................tkerfpeade..t 45
                +i+G g+ ++ la+ +a++g +v++v++ +++                                         ++++f +++e  +
  EGE23882.1 13 LIIGFGKAGKTLAQTLAKAGKEVILVEKSADMYggtcinigcipskklaflsherdvslsdaiarknqliaklNQANFDKVNEldN 98
                69*************************99965567777777777766666666666666666555555555554444444444654 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0055
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG.......................-GGG-TT-SE.........-EEEE--S-HHHHHHHHHH CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefa.......................tkerfpeade.........tavvvlthdhklDaealea 63 
                 lvi+G+g ++ + a + a +g  vt++++ ++f                        tk       +         ++++v+t+d +l a+a+  
  EGE23882.1 168 LVIIGGGYIGLEFAFIFAGFGSVVTILETADTFLpkedadirqnllgimankqitvkTK-------QqikqvndanNHAMVVTEDGELMADAILV 255
                 79*****************************9996777777666666666655555544.......04444555887888888877765555544 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00043      0.32      15      57 ..       7      48 ..       1      57 [. 0.87
   2 ?    1.6   0.0      0.18   1.3e+02      18      48 ..     166     195 ..     154     200 .. 0.82
   3 ?   -2.4   0.0       3.1   2.3e+03      88      96 ..     356     364 ..     310     398 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00043
                HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4 15 yaesDvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57
                +  ++ +i+G G +G t a++lak+ + +v+++e+s  + GG+
  EGE23882.1  7 IRHTEHLIIGFGKAGKTLAQTLAKA-GKEVILVEKSADMYGGT 48
                5566778******************.9*********9999987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.18
                 EEEEEE--SHHHHHHHHHHHHCTTS-EEEEE CS
        Thi4  18 sDvvivGaGssGLtaayylakkpdlkvaile 48 
                   +vi+G+G  GL  a+++a   +  v+ile
  EGE23882.1 166 KQLVIIGGGYIGLEFAFIFAGF-GSVVTILE 195
                 5689*************99987.77777777 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.1
                 SSEEEESEH CS
        Thi4  88 gdyvvvkda 96 
                 +++  vk a
  EGE23882.1 356 EQGHAVKTA 364
                 222223333 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.4   1.6e-05     0.012       3      36 ..      13      46 ..      11      55 .. 0.89
   2 ?   -0.8   0.1      0.82   6.1e+02       2      31 ..     168     197 ..     167     200 .. 0.86
   3 ?   -1.0   0.0      0.92   6.9e+02     376     403 ..     281     302 ..     208     308 .. 0.69
   4 ?    0.2   0.0       0.4     3e+02     211     248 ..     331     369 ..     316     382 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
                   EEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2  3 iViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36
                   ++iG G AG + A ++a+aG++v++vek   + g
     EGE23882.1 13 LIIGFGKAGKTLAQTLAKAGKEVILVEKSADMYG 46
                   8***************************987655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.82
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavveke 31 
                    +++iG+G  GL  A   a  G  v+++e +
     EGE23882.1 168 LVIIGGGYIGLEFAFIFAGFGSVVTILETA 197
                    69**********999999999988888865 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.92
                    EEBETTSBESTTEEESSBTEEE-STCEE CS
  FAD_binding_2 376 vetdengrvldadgqpipGLYAaGevaa 403
                    +++       d+ ++ +p  YA G va+
     EGE23882.1 281 IAV------NDRLQTSVPHIYAMGDVAG 302
                    223......4444558888888888885 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.4
                    ....GSSSBSSGT.T-S-HHHHHHHCTTSSEES..TT-E CS
  FAD_binding_2 211 lgaaaeaettnap.avtGdglalalragaalnddrmeev 248
                     ++ a+a  tn+p a+ G   ++a ++g a++++ +e+v
     EGE23882.1 331 GRTFAYAVFTNPPlANVGMTEQVAKEQGHAVKTAVLEAV 369
                    56779999********************99999877766 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00012     0.088       2      31 ..      13      42 ..      12      46 .. 0.92
   2 ?   -1.4   0.0       2.2   1.6e+03      49      49 ..     220     220 ..     169     257 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
                EEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA  2 ailGaGaiGsllaakLakagadvtlilrsr 31
                +i+G+G  G +la +Lakag +v+l+ +s+
  EGE23882.1 13 LIIGFGKAGKTLAQTLAKAGKEVILVEKSA 42
                69***********************98765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.2
                 E CS
        ApbA  49 e 49 
                 +
  EGE23882.1 220 Q 220
                 2 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   4.5e-05     0.034       4      35 ..      14      41 ..      13      69 .. 0.89
   2 ?   -2.3   0.7       9.1   6.8e+03       2      14 ..     168     180 ..     167     196 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.5e-05
                   EETTSHHHHHHHHHHHHTTS-GGCEEEEEESS CS
  F420_oxidored  4 iiGaGnmgealasgllaagaqpheivvansrn 35
                   iiG+G+ g++la+ l++ag   +e++++ +++
     EGE23882.1 14 IIGFGKAGKTLAQTLAKAG---KEVILV-EKS 41
                   89*****************...999977.544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 9.1
                    EEEETTSHHHHHH CS
  F420_oxidored   2 igiiGaGnmgeal 14 
                    + iiG+G +g  +
     EGE23882.1 168 LVIIGGGYIGLEF 180
                    6799999998655 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0056       4.2       2      34 ..      13      42 ..      12      77 .. 0.89
   2 ?    4.0   0.1     0.076        57       2      61 ..     169     228 ..     168     271 .. 0.75
   3 ?   -1.0   0.0       2.6     2e+03      40      80 ..     352     390 ..     347     423 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0056
                     EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSH CS
  Sacchrp_dh_NADP  2 liiGaGsvGqavaellarhfdvdaeitvadrsk 34
                     liiG+G+ G+ +a+ la+ ++    ++++++s 
       EGE23882.1 13 LIIGFGKAGKTLAQTLAKAGKE---VILVEKSA 42
                     79****************9974...77777765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.076
                      EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH......TTTCEEEEE--TTTHHH CS
  Sacchrp_dh_NADP   2 liiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka......lgvrfeaialdaenyea 61 
                      +iiG+G++G  +a   a  ++v   +t+ +  ++ l ++ a++          + +++++++ +++
       EGE23882.1 169 VIIGGGYIGLEFAFIFAGFGSV---VTILETADTFLPKEDADIrqnllgI---MANKQITVKTKQQ 228
                      8************999999999...9999999998888887776654330...3334444444333 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.6
                      HHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG CS
  Sacchrp_dh_NADP  40 laakalgvrfeaialdaenyeavLaallkegdlvvnlsppi 80 
                       +ak++g  ++++ l a n+++  a++l+++d ++ ++ + 
       EGE23882.1 352 QVAKEQGHAVKTAVLEAVNIPK--AKILEQTDGLLKAVIDA 390
                      4556688888888888888888..77788886555555444 PP

>> Importin_rep_3  Importin 13 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0059       4.4      20      58 ..     229     267 ..     224     276 .. 0.84
   2 ?    2.5   0.0       0.2   1.5e+02      27      50 ..     348     371 ..     340     388 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0059
  Importin_rep_3  20 lsqceeipelkqvvqedGklLvetvLeaiggesprslle 58 
                     ++q ++ ++ + vv+edG+l+ +++L a g  +  + l+
      EGE23882.1 229 IKQVNDANNHAMVVTEDGELMADAILVATGRRANTQGLD 267
                     78889999999***************9999887766555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.2
  Importin_rep_3  27 pelkqvvqedGklLvetvLeaigg 50 
                      + +qv +e+G+   ++vLea++ 
      EGE23882.1 348 GMTEQVAKEQGHAVKTAVLEAVNI 371
                     567899**************9975 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0042       3.1      26      53 ..      12      39 ..       6      43 .. 0.91
   2 ?   -1.2   0.0       2.5   1.9e+03      89     125 ..     114     150 ..      89     171 .. 0.75
   3 ?   -0.2   0.1       1.2   9.2e+02      24      53 ..     166     195 ..     153     200 .. 0.89
   4 ?    1.7   0.1      0.31   2.3e+02     115     155 ..     207     249 ..     201     258 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
                   EEEE--SHHHHHHHHHHHHCT-EEEEE- CS
  AdoHcyase_NAD 26 avvaGyGdvGkGcaaslkglGarvivte 53
                    +++G+G  Gk  a++l ++G  vi+ e
     EGE23882.1 12 HLIIGFGKAGKTLAQTLAKAGKEVILVE 39
                   5799********************9987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.5
                    SSSB-HHHHCCS-TTEEEEE-SSTTTTBTHHHHHTTT CS
  AdoHcyase_NAD  89 kdiitlehlkkmkddaivcniGhfdseidvaaleana 125
                     +++t+++  k+  d i  n G ++ +  +++l+ ++
     EGE23882.1 114 VQVVTADDTLKITADHIHINTGAYNWQPPIDGLKDSK 150
                    5688888888888888988998888887777777664 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.2
                    SEEEEE--SHHHHHHHHHHHHCT-EEEEE- CS
  AdoHcyase_NAD  24 kvavvaGyGdvGkGcaaslkglGarvivte 53 
                    k+ v++G G +G   a  + g+G+ v++ e
     EGE23882.1 166 KQLVIIGGGYIGLEFAFIFAGFGSVVTILE 195
                    899***********************9987 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.31
                    TBTHHHHHTTT-EEEEE..ETTEEEEE-TTS-EEEEEGGGSBC CS
  AdoHcyase_NAD 115 eidvaaleanalkkeev..kpqvdrvtlkdgkkiillaeGrll 155
                    +i  + l  +a k+++v  k q+++v+ ++++++++  +G l+
     EGE23882.1 207 DIRQNLLGIMANKQITVktKQQIKQVNDANNHAMVVTEDGELM 249
                    5555555555555555511667888888889999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.38
# Mc/sec: 3547.60
//
Query:       EGE23883.1  [L=264]
Description: acetoin reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-58  197.7   1.4    1.7e-58  197.3   1.4    1.1  1  adh_short        short chain dehydrogenase
    1.4e-58  198.3   0.8    1.7e-58  197.9   0.8    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.7e-07   31.4   0.8    2.7e-07   30.7   0.8    1.3  1  KR               KR domain
    0.00019   21.5   0.1     0.0013   18.8   0.1    2.0  2  HGTP_anticodon   Anticodon binding domain
     0.0005   20.0   0.3    0.00076   19.4   0.3    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
  ------ inclusion threshold ------
      0.013   16.2   0.2      0.035   14.8   0.1    1.9  2  Methyltransf_25  Methyltransferase domain
       0.03   13.7   0.3       0.05   12.9   0.3    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.053   13.3   0.4      0.089   12.6   0.5    1.4  1  Methyltransf_31  Methyltransferase domain
      0.085   13.5   0.1       0.25   12.0   0.1    1.9  1  Methyltransf_11  Methyltransferase domain
       0.22   11.0   1.1       0.73    9.2   1.0    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.3   1.4   9.4e-62   1.7e-58       1     190 [.      11     201 ..      11     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.3 bits;  conditional E-value: 9.4e-62
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 kv++vtG ++G+G aia +lak+G+kvv+ d+se++l+++++e+ ++g + + + +D +++++  +lv++avk +g++dv+vnNAG++ ++pf  ++e+
  EGE23883.1  11 KVAIVTGSAAGLGNAIATRLAKDGFKVVLHDISEDNLKTAKDEFDKAGYESISVVGDASKKDDQIRLVDEAVKAFGQVDVFVNNAGVESVEPFLAIEEK 109
                 89************************************************************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 100 ewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 e++rv+ vN++gv+  t+a++++m+ +   G+I+n +S+ag++++++++ YsA+K+av+++t+s akela+++irvna +PG+ dT+m +++
  EGE23883.1 110 EIDRVLGVNIKGVIFGTQAAAEQMKkQDGIGKIINACSIAGHESYEMLSLYSATKHAVRSFTHSTAKELAEHNIRVNAYCPGVADTPMWERI 201
                 *************************44456**********************************************************9876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.9   0.8   9.5e-62   1.7e-58       1     233 [.      17     261 ..      17     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: 197.9 bits;  conditional E-value: 9.5e-62
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTT.SEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelg.aev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   G a g+G aiA +la+ G +vvl+d++e++ k++++  ++ g +++ +  D++++++  +lv+e+v+ fg++D++vnnag+     +pfl ++++e+
    EGE23883.1  17 GSAAGLGNAIATRLAKDGFKVVLHDISEDNLKTAKDEFDKAGyESIsVVGDASKKDDQIRLVDEAVKAFGQVDVFVNNAGVESV--EPFLAIEEKEI 111
                   7899**************************55555555555526678*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT..... CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg...gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg..... 184
                   dr+l vn+++++  ++aa++ mk++   g+i+n  s++++ + +  + y+a+K+a+ ++t++ A+el++++iRvNa +pg+ +T+++++i+      
    EGE23883.1 112 DRVLGVNIKGVIFGTQAAAEQMKKQdgiGKIINACSIAGHESYEMLSLYSATKHAVRSFTHSTAKELAEHNIRVNAYCPGVADTPMWERIDAafveh 208
                   ********************9999999**************************************************************98776655 PP

                   ....HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 185 ....fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                        ++  +e+ + + +gr  +pe+va+++ fLas++a yitGqt+  DgG+
    EGE23883.1 209 kgyePKQAWKEFTQGILVGRPQQPEDVANLVSFLASKDADYITGQTILTDGGM 261
                   5554556889999***************************************8 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.8   1.5e-10   2.7e-07       4     163 ..      14     174 ..      12     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.5e-10
                 EEETTTSHHHHHHHHHHHHHHS-EE.EEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhl.vllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 ++tG + gLG ++a+ la++g + +   +s +  + ++     +e+ + g e   v  D s+kd+  +l++e+ + ++++   ++ Agv   +++   +
  EGE23883.1  14 IVTGSAAGLGNAIATRLAKDGFKVVlHDISED--NLKT---AKDEFDKAGYESISVVGDASKKDDQIRLVDEAVKAFGQVDVFVNNAGVESVEPFLAIE 107
                 8********************65430334444..3333...45789999**999999****************************************** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaaNaflDalaeyr 163
                 ++++++vl   +kG+    ++ ++     + +  ++   Siag     + + Y+a+ + + ++ ++ 
  EGE23883.1 108 EKEIDRVLGVNIKGVIFGTQAAAEqmkkqDGIGKIINACSIAGHESYEMLSLYSATKHAVRSFTHST 174
                 ************9987655555443422355667888888888888888888888888777777665 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   7.4e-07    0.0013      17      73 ..      22      79 ..      11      90 .. 0.86
   2 ?   -0.3   0.0      0.69   1.2e+03      16      35 ..     169     188 ..     160     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.4e-07
                    HHHHHHHHHHTTTSEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEE CS
  HGTP_anticodon 17 yakklaeeLraagirveldd.snesigkkireadllgipfavvvGekelekgtvtvrd 73
                    + + +a +L ++g++v+l d s+++++ +  e d++g+  + vvG+ + +++++ + d
      EGE23883.1 22 LGNAIATRLAKDGFKVVLHDiSEDNLKTAKDEFDKAGYESISVVGDASKKDDQIRLVD 79
                    56789*******************************************9999998876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.69
                     HHHHHHHHHHHTTTSEEEEE CS
  HGTP_anticodon  16 eyakklaeeLraagirveld 35 
                      +  + a+eL +++irv  +
      EGE23883.1 169 SFTHSTAKELAEHNIRVNAY 188
                     56677899******999765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   4.3e-07   0.00076       9      53 ..      21      66 ..      11     130 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.3e-07
                CCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH.HHHCCTTTT CS
     3HCDH_N  9 tmGagiaavfasagleVvlvdiseealekalekiek.sleklvekg 53
                 +G+ ia+ +a+ g++Vvl dise+ l++a+++  k  +e+    g
  EGE23883.1 21 GLGNAIATRLAKDGFKVVLHDISEDNLKTAKDEFDKaGYESISVVG 66
                489******************************9984333333223 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.9e-05     0.035       7      58 ..      21      71 ..      17     115 .. 0.79
   2 ?   -2.6   0.0       5.4   9.6e+03      40      69 ..     177     205 ..     165     222 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-05
                     TTSH.HHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGB CS
  Methyltransf_25  7 GtGr.ltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedl 58
                     G G+ ++ +lak +   kv+  Dise+ l++a+ +++++g++   v+gda++ 
       EGE23883.1 21 GLGNaIATRLAKDG--FKVVLHDISEDNLKTAKDEFDKAGYESISVVGDASKK 71
                     44542566788884..9**********************99888888998654 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.4
                      HHHHTTTTEEEEESBCCGBSSSTTTEEEEE CS
  Methyltransf_25  40 raeeeglnvefvqgdaedlpfedgsfDlvv 69 
                      +++e++++v+ ++  + d p  + ++D+ +
       EGE23883.1 177 ELAEHNIRVNAYCPGVADTPMWE-RIDAAF 205
                      33345556666666666665443.555555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   2.8e-05      0.05      46     106 ..       7      68 ..       1      99 [. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
                      --TTEEEEES-TT-HHHHHHHHHH.HHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE-- CS
  Ubie_methyltran  46 krgakvlDvagGtgDlafklsdsv.gekgkvvvlDinenmLkvgekklkeegkinieflqan 106
                      ++  kv  v+g ++ l  +++  + ++ +kvv+ Di+e+ Lk++++   + g+ +i  +   
       EGE23883.1   7 QQNGKVAIVTGSAAGLGNAIATRLaKDGFKVVLHDISEDNLKTAKDEFDKAGYESISVVGDA 68 
                      44445556777777888787765505556*************************99876433 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5     5e-05     0.089      17      65 ..      26      70 ..      16     182 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5e-05
  Methyltransf_31 17 ltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee 65
                     ++ +la    ++ +vv+ Dise+ ++ A+ + +k g++ +++ +gd+ +
       EGE23883.1 26 IATRLA---KDGFKVVLHDISEDNLKTAKDEFDKAGYESISV-VGDASK 70
                     334444...33558************************8886.455555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00014      0.25       4      54 ..      21      70 ..      18     118 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                     T-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC CS
  Methyltransf_11  4 GcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaek 54
                     G G+ + a  lak g +vv  D+s+  lk+ak++  ++g +   vv+da+k
       EGE23883.1 21 GLGNAI-ATRLAKDGFKVVLHDISEDNLKTAKDEFDKAGYESISVVGDASK 70
                     455444.555667999*********************99944447888774 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.0   0.00041      0.73       2      77 ..      14     100 ..      13     186 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00041
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S---H CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrs....alerlfkee.qpdavihlAavggv 77 
                 +VtG +  +G+a++ +l++ g +v+  d  +++ +ta++e          v +d  +++     +++++k + q+d+ ++ A+v +v
  EGE23883.1  14 IVTGSAAGLGNAIATRLAKDGFKVVLHDISEDNLKTAKDEFDkagyesISVVGDASKKDdqirLVDEAVKAFgQVDVFVNNAGVESV 100
                 8********************998887777555555444433789999888888888884444455555555677777777775555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 2237.36
//
Query:       EGE23884.1  [L=186]
Description: hypothetical protein EA1_07810 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-18   65.7   0.0    5.3e-18   64.7   0.0    1.5  1  DUF302           Domain of unknown function DUF302
     0.0016   18.6   0.5     0.0029   17.8   0.2    1.5  2  DUF520           Protein of unknown function (DUF520)
  ------ inclusion threshold ------
      0.016   15.4   0.0      0.023   14.9   0.0    1.3  1  SpoU_methylase   SpoU rRNA Methylase family
      0.028   13.8   0.1       0.06   12.8   0.0    1.6  2  Diphthamide_syn  Putative diphthamide synthesis protein
       0.12   12.6   0.0       0.24   11.7   0.0    1.5  1  DUF3762          Protein of unknown function (DUF3762)


Domain annotation for each model (and alignments):
>> DUF302  Domain of unknown function DUF302
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   1.5e-21   5.3e-18       1      62 [.      94     154 ..      94     154 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 1.5e-21
                 EEHHHHHHCTT-S--S-EEEEEEE-HHHHHHHHCC-GGGGGG-SEEEEEEEETTEEEEEEE- CS
      DUF302   1 iDvqatlkkklgedlrpykilgaCnPklatealqadpeiglllPcrvvVyekdgkttvsyvd 62 
                 iD+q ++ +++++d++p ++++++ Pk++t+++++dp+++l lP++v+V+e dg+++vs+ d
  EGE23884.1  94 IDHQHAA-QQVDLDMQPATVIVFGTPKAGTPLMKKDPHFALKLPLKVLVTETDGQVWVSFED 154
                 8******.***************************************************865 PP

>> DUF520  Protein of unknown function (DUF520)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2     8e-07    0.0029      19      58 ..      60      99 ..      48     108 .. 0.84
   2 ?   -3.2   0.0       2.3   8.2e+03       8      26 ..     163     181 ..     155     183 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 8e-07
      DUF520 19 dqakkeistRfDfkgskaeielkekekeitltaesefklk 58
                 +++k i++R+Df ++ ++++ + kek++t++a  + +  
  EGE23884.1 60 THTTKTIASRYDFNDTVSRLQSAFKEKNMTIFATIDHQHA 99
                4578*****************99999******99887754 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.3
      DUF520   8 evdlqevknAvdqakkeis 26 
                 ++   +vk+++ +a+k i+
  EGE23884.1 163 QIGFDDVKDTLANAEKLIE 181
                 5555666777777776665 PP

>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   6.5e-06     0.023      49     109 ..      56     123 ..      24     139 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.5e-06
                     CTTHHHHHH.EEEE....SSHHHHHHHHCCCTEEEEEESTT-SEGC..CSHHHTTEEEEEEBTTTBS- CS
  SpoU_methylase  49 aagalevle.lkvv....dsleealkelkeegfalvatslkgksls..eidlkekvalvfGnEdkGls 109
                     a+++ ++ + ++      d+++++ +++ke++++++at  +++  +  ++d++  +++vfG+ ++G +
      EGE23884.1  56 AMNTTHTTKtIASRydfnDTVSRLQSAFKEKNMTIFATIDHQHAAQqvDLDMQPATVIVFGTPKAGTP 123
                     44444333333332122256666667789999******997777773466888********9888865 PP

>> Diphthamide_syn  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.57     2e+03     272     294 ..       9      31 ..       6      40 .. 0.81
   2 ?   12.8   0.0   1.7e-05      0.06      72     162 ..      68     157 ..      48     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.57
  Diphthamide_syn 272 siddgkeFekPvltpyElevalg 294
                      s+   k+F  P++    +++al+
       EGE23884.1   9 SVKKTKRFFLPMVMSLTAMMALT 31 
                      66778999999999999999987 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.7e-05
  Diphthamide_syn  72 ieldvehlvetlkknfkekkkivlvstiqyahaleevkeeleeegyevvkvpqsekp...lspgevlgctspklkeeeeevdailyigdgrfhl 162
                      +++d++++v++l++ f ++k++ +++ti ++ha+++v   ++ + + v+ +p++  p   + p   l+   + l    +e+d  + ++ +++h+
       EGE23884.1  68 SRYDFNDTVSRLQSAF-KEKNMTIFATIDHQHAAQQVDLDMQPATVIVFGTPKAGTPlmkKDPHFALKLPLKVL---VTETDGQVWVSFEDTHA 157
                      567999**********.7889****************9999977444445554444411133333333344444...44566666666666665 PP

>> DUF3762  Protein of unknown function (DUF3762)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.8e-05      0.24      24      59 ..      41      77 ..      16      87 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
     DUF3762 24 kadaavl.rcrldyhaaetdfrdeekhvryvyndvss 59
                ++ a  +    ++yha +t  +++    ry +nd  s
  EGE23884.1 41 PSSAKTIpTQTMEYHAMNTTHTTKTIASRYDFNDTVS 77
                344444414569**********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 1619.28
//
Query:       EGE23885.1  [L=125]
Description: phage shock protein E precursor [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   48.1   0.0    1.7e-12   47.8   0.0    1.1  1  Rhodanese  Rhodanese-like domain
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.013   15.5   0.0    1.3  1  DUF442     Putative phosphatase (DUF442)
        0.2   11.6   0.5       0.61   10.1   0.3    1.8  3  DUF4995    Domain of unknown function


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   2.9e-16   1.7e-12      16     105 ..      45     120 ..      31     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 2.9e-16
   Rhodanese  16 llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGfkawk 105
                  +DvR++eeY++gh++gA+n+          ++++ +  +e++++    ++ ++ +yc++g ra+ a ++l ++G ++  v  GG+++ +
  EGE23885.1  45 WIDVRSAEEYADGHLQGALNI----------TPDQIASHIEAIEPN---KNAPINLYCRSGRRAEVARKTLLEMG-HTNVVNHGGYQDLY 120
                 8********************..........9*************6...**************7777777777**.66566678888765 PP

>> DUF442  Putative phosphatase (DUF442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   2.2e-06     0.013      69     100 ..      64      96 ..      32     104 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-06
      DUF442  69 eiteddveafqrala.eaegpvlayCrsGtRal 100
                 +it+d+++   +a++ + ++p+  yCrsG Ra 
  EGE23885.1  64 NITPDQIASHIEAIEpNKNAPINLYCRSGRRAE 96 
                 79************945789***********96 PP

>> DUF4995  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3    0.0001      0.61       1      25 [.       1      25 [.       1      36 [. 0.87
   2 ?   -1.8   0.0      0.55   3.3e+03      24      37 ..      40      55 ..      29      70 .. 0.60
   3 ?   -1.2   0.0      0.36   2.2e+03      26      47 ..      55      76 ..      38      88 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0001
     DUF4995  1 mkkklllafaaaaialasCqtspke 25
                mk+ +lla   a+++l++C+ +++ 
  EGE23885.1  1 MKHAVLLALSVATFGLSACSFNATA 25
                9******************988554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.55
     DUF4995 24 keeysWik..kaldva 37
                k  + Wi+  +a++ a
  EGE23885.1 40 KAVGVWIDvrSAEEYA 55
                4445677522444544 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.36
     DUF4995 26 eysWikkaldvavqQLeltaee 47
                +++ ++ al+++  Q+ + +e 
  EGE23885.1 55 ADGHLQGALNITPDQIASHIEA 76
                3455666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1121.42
//
Query:       EGE23886.1  [L=331]
Description: hypothetical protein EA1_07820 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2503.17
//
Query:       EGE23887.1  [L=216]
Description: lysine exporter protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-38  131.4   8.8    3.2e-38  131.1   8.8    1.1  1  LysE      LysE type translocator
     0.0086   15.8   6.2      0.055   13.2   6.1    2.2  1  TerC      Integral membrane protein TerC family


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1   8.8   3.6e-42   3.2e-38       2     192 ..      16     214 ..      15     215 .. 0.90

  Alignments for each domain:
  == domain 1  score: 131.1 bits;  conditional E-value: 3.6e-42
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksve....... 93 
                 ++++ pGp+ l+ l+ ++++g+ +g+ +++gvl+gd++li++ ++G+ ++lk++p+v+++++l+Gg yL++lg   +  a  +   +++  +       
  EGE23887.1  16 VVIVLPGPNSLYCLSVSASHGYTAGLRAIAGVLLGDLILIMATVFGVGAILKQYPQVFDVIKLIGGTYLAYLGTRLIIGAYHTFKNRQAIMKselsikp 114
                 689**********************************************************************87665555444333322223356778 PP

        LysE  94 aslvkpflkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvl.riinvvvgvlligfavklll 191
                 ++  + f + l ls++NPkailf+ls++ +++++++  +  ++l+la++l ++s+ +++ll  ++++l++++s++ vl   ++  +++l+igf+v+l +
  EGE23887.1 115 PKKQNYFYRSLSLSVTNPKAILFFLSFFVQFVDPNYDKPLLSFLVLAVILQMVSVSYLTLLVYTGKALAEKFSKRPVLsSLAMFSAAMLFIGFGVNLWI 213
                 99*************************************************************************99967778888999*******987 PP

        LysE 192 e 192
                 +
  EGE23887.1 214 S 214
                 6 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   6.1   6.1e-06     0.055      36     102 ..      46     125 ..      13     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.1e-06
        TerC  36 lGilgAlvlRillillavallel....fdlilligglfLlytavkellekr...le.nklvk.eekkkkkktkst....l 102
                   +lg l+l ++ ++ + a+l++    fd+i+ligg +L y+++++++ +    ++ + ++k e + k +k++++    l
  EGE23887.1  46 GVLLGDLILIMATVFGVGAILKQypqvFDVIKLIGGTYLAYLGTRLIIGAYhtfKNrQAIMKsELSIKPPKKQNYfyrsL 125
                 4455666676777777777887766667*******************987777733344444044444455555544440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1681.82
//
Query:       EGE23888.1  [L=269]
Description: peptidylprolyl isomerase, FKBP-type [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-26   92.2   7.4    3.1e-26   92.2   7.4    2.0  2  FKBP_N          Domain amino terminal to FKBP-type peptidyl-p
    1.5e-21   76.5   0.8    5.4e-21   74.7   0.0    2.1  2  FKBP_C          FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
       0.22   11.5   2.6        6.2    6.8   0.1    2.9  3  Neocarzinostat  Neocarzinostatin family


Domain annotation for each model (and alignments):
>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   7.4   5.1e-30   3.1e-26       2      97 .]      45     145 ..      44     145 .. 0.91
   2 ?   -0.6   0.3      0.46   2.7e+03      41      60 ..     246     264 ..     233     269 .] 0.42

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 5.1e-30
      FKBP_N   2 dkvsYalGlsigqqlkaqgkeldkdavlaGlkdalkgksk.ltdeeiqevlqalqeklqekq....eeeaeknkaegeaFlaenkkkeGVkttesGLqY 95 
                 ++vsY++G++ g+++k+ +++ld+d++++++kd+++g ++ lt+++iq++ qa++++++e++    +++a  nka+ge+Flaen+kk+GVktt+sGLqY
  EGE23888.1  45 EQVSYVFGYDAGESMKKIEENLDIDVYIKAFKDGYAGVDSaLTKKQIQTLGQAYEKRKTEEAiqkqQQAAVTNKADGEKFLAENAKKDGVKTTPSGLQY 143
                 689********************************9966659999*********77666555555468999**************************** PP

      FKBP_N  96 kV 97 
                 kV
  EGE23888.1 144 KV 145
                 *9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.46
      FKBP_N  41 kltdeeiqevlqalqeklqe 60 
                 ++   e q++++a ++++qe
  EGE23888.1 246 AI-AAEQQAIIDAQMQAIQE 264
                 22.22222222222333333 PP

>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.21   1.3e+03      31      77 ..      58     104 ..      28     123 .. 0.59
   2 !   74.7   0.0     9e-25   5.4e-21       3      93 ..     153     238 ..     151     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
                 HTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBC CS
      FKBP_C  31 rakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekgla 77 
                   k++e +++   +ik+f+++  g+    +++ + +  +aY +++ +
  EGE23888.1  58 SMKKIEENLDIDVYIKAFKDGYAGVDSALTKKQIQTLGQAYEKRKTE 104
                 44555555555556677777777766655555555555666666664 PP

  == domain 2  score: 74.7 bits;  conditional E-value: 9e-25
                 CBB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEE CS
      FKBP_C   3 eeakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveL 93 
                 + ++ +d V+  y+g+l dg+vfdss  +++ + f +   qvi+G+ e+l+ mk G+k +l +p+++aYge+g+ ++ i pn+ LvF + L
  EGE23888.1 153 S-PTAKDGVYAAYEGRLIDGTVFDSS--EGEAVPFMLS--QVIEGWSEGLQLMKEGGKYELYVPSQMAYGEHGMYNAGIGPNSVLVFVIDL 238
                 4.788899******************..*********9..8*********************************9999***********98 PP

>> Neocarzinostat  Neocarzinostatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.32   1.9e+03      25      54 ..      11      39 ..       8      48 .. 0.59
   2 ?    6.8   0.1     0.001       6.2      21      58 ..      85     122 ..      81     129 .. 0.91
   3 ?    3.5   0.0     0.012        69      48      86 ..     142     181 ..     124     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.32
  Neocarzinostat 25 gstlalgeCvavapggvaCnkaagavvtad 54
                     +tl l  C++++ ++   ++ +++ v+ d
      EGE23888.1 11 AATLILVGCQKDTSASL-PKAGEKSTVVSD 39
                    57888888888844443.344444444444 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.001
  Neocarzinostat  21 GftagstlalgeCvavapggvaCnkaagavvtadasGk 58 
                      +t+    +lg+  ++++ + a +k+++a+vt  a+G+
      EGE23888.1  85 ALTKKQIQTLGQAYEKRKTEEAIQKQQQAAVTNKADGE 122
                     578999999***********************999996 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.012
  Neocarzinostat  48 gavvtadasGki.sasltvaksFegvlsdGssigavdcat 86 
                     +  v+++++Gk  +a+  v  ++eg l dG+ +   + ++
      EGE23888.1 142 QYKVITEGTGKSpTAKDGVYAAYEGRLIDGTVFDSSEGEA 181
                     344669*****99*****************9876655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2013.25
//
Query:       EGE23889.1  [L=553]
Description: putative ABC transporter ATP-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-54  184.7   0.2    2.4e-28   99.3   0.0    2.9  3  ABC_tran      ABC transporter
      6e-17   62.4   5.2    3.7e-06   27.0   0.0    4.3  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.4e-13   50.6  20.8    8.1e-12   45.0  12.4    2.9  3  ABC_tran_Xtn  ABC transporter
    1.3e-08   34.6   1.1       0.17   11.3   0.0    4.2  4  SMC_N         RecF/RecN/SMC N terminal domain
    9.2e-07   28.9   0.3      0.013   15.6   0.1    2.6  2  MMR_HSR1      50S ribosome-binding GTPase
    6.4e-06   26.8  16.9    0.00039   21.0   0.3    3.5  3  AAA_23        AAA domain
    4.2e-05   23.5   0.3      0.019   14.9   0.0    2.5  2  RsgA_GTPase   RsgA GTPase
    0.00011   22.2   1.6       0.91    9.6   0.0    3.2  2  Dynamin_N     Dynamin family
    0.00016   21.4   0.7        0.3   10.9   0.0    2.4  2  AAA_29        P-loop containing region of AAA domain
    0.00031   20.9   1.1       0.97    9.7   0.0    4.1  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
    0.00056   20.1   0.5       0.55   10.5   0.1    3.2  3  Roc           Ras of Complex, Roc, domain of DAPkinase
     0.0016   17.7   1.1      0.085   12.0   0.0    3.1  3  NB-ARC        NB-ARC domain
     0.0018   17.9   0.6       0.15   11.7   0.1    2.5  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
     0.0023   18.2   2.1       0.34   11.2   0.1    3.6  2  AAA_22        AAA domain
     0.0025   18.0   3.4       0.61   10.3   0.3    3.4  3  AAA_33        AAA domain
      0.009   15.5   0.2        1.5    8.3   0.0    2.4  2  Arf           ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.012   15.2   3.6        0.9    9.1   0.0    3.2  3  AAA_27        AAA domain
      0.015   14.3   0.3       0.77    8.7   0.0    2.3  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
      0.026   14.2   3.6        1.2    8.8   0.1    3.0  2  AAA_24        AAA domain
      0.033   14.2   0.1        4.8    7.2   0.0    3.6  4  AAA_14        AAA domain
      0.043   12.6   0.3        2.6    6.8   0.1    2.2  2  DLIC          Dynein light intermediate chain (DLIC)
      0.053   13.0   1.3       0.34   10.4   0.2    2.5  2  FeoB_N        Ferrous iron transport protein B
       0.13   11.5   0.3        2.1    7.6   0.0    2.3  2  Zeta_toxin    Zeta toxin
       0.15   11.8   1.0       0.27   11.0   0.0    1.8  2  DUF5113       Domain of unknown function (DUF5113)
       0.17   11.6   5.1       0.99    9.1   0.4    2.7  2  AAA_30        AAA domain
       0.26   11.9   9.3        2.5    8.7   0.1    3.6  2  AAA_18        AAA domain
       0.27   10.7   0.0       0.27   10.7   0.0    2.3  1  SRPRB         Signal recognition particle receptor beta subun
       0.29   11.4   6.4        1.4    9.1   0.0    3.3  3  AAA_28        AAA domain
       0.38   11.5   6.9       0.94   10.2   6.9    1.6  1  MRP-L46       39S mitochondrial ribosomal protein L46
       0.75    8.4  12.5        1.9    7.0   0.0    3.6  3  AAA_13        AAA domain
       0.83    9.6   2.7         10    6.0   0.1    2.4  2  NACHT         NACHT domain
        1.1    9.6  10.4        4.1    7.7   0.1    3.7  2  AAA_16        AAA ATPase domain
          2    8.0   3.9         10    5.7   0.6    2.5  2  SRP54         SRP54-type protein, GTPase domain
        2.5    8.6   7.1        1.3    9.4   0.1    3.5  3  AAA           ATPase family associated with various cellular 
        9.3    6.1   6.1         12    5.7   0.6    3.4  3  NTPase_1      NTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   4.7e-31   2.4e-28       1     137 []      22     191 ..      22     191 .. 0.94
   2 ?   -1.3   0.1       5.7   2.9e+03      68      79 ..     267     279 ..     204     310 .. 0.57
   3 !   82.1   0.0     1e-25   5.2e-23       2     137 .]     340     473 ..     339     473 .. 0.79

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 4.7e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................... 79 
                 lk++sl++ +g k++++G nGaGKStLl+++ag  +  +Ge            +  +  +ig+lpqepql+p + vr n                    
  EGE23889.1  22 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDTEFSGEA-----------RAATGIKIGYLPQEPQLDPAKDVRGNvedgvrealdalerlnqiya 109
                 79***************************************9...........899******************************************* PP

                 .............................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .............................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                              + + ++eka++ l+l+ ++++v     s+LSgG+k+rval+r+ll+kp++lllDEpt+
  EGE23889.1 110 eyaepdadfdklaaeqgkmediiqawdahNLNTQLEKAADALRLPPWDADV-----SKLSGGEKRRVALCRLLLSKPDMLLLDEPTN 191
                 *********999999999988888888887888899999999999877666.....8*****************************8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 5.7
                 --S-TTSB.HHHH CS
                 xxxxxxxx.xxxx RF
    ABC_tran  68 pqlfpelt.vren 79 
                 + l++el+ vr+n
  EGE23889.1 267 KALKQELEwVRKN 279
                 1122222222222 PP

  == domain 3  score: 82.1 bits;  conditional E-value: 1e-25
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH...........HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...........xxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren...........esdeeieka 88 
                 +n+s+++ +  +v+ivG+nGaGK+tL+++++g+ +p+ G++++             + +++++ q  ++l++++tv e+           e++    ++
  EGE23889.1 340 ENLSFTVPPMAIVGIVGPNGAGKTTLFNMITGKDTPDTGTVEV-----------GESVKVAYVGQVrDELDDKKTVWEEvsdgldmitvgEYTTPSRAY 427
                 79***************************************44...........456777778777777888888877777777777555444444444 PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + +++ k+ +++++     +LSgG++ r++la++l + ++++llDEp++
  EGE23889.1 428 IGRFNFKGQDQQKL---VGNLSGGERNRLQLAKTLKQGANVILLDEPSN 473
                 55555444444444...7*****************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   0.00015     0.075       4      26 ..      37      56 ..      35      79 .. 0.78
   2 !   27.0   0.0   7.2e-09   3.7e-06     185     303 .]     104     223 ..      95     223 .. 0.76
   3 !   13.9   0.6   6.8e-05     0.035       2      19 ..     352     369 ..     351     382 .. 0.87
   4 !    7.5   0.0    0.0059         3     219     283 ..     414     488 ..     387     504 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00015
      AAA_21  4 liGpNgsGKSnLLdaldllarld 26
                + G Ng+GKS+LL+++ ++   d
  EGE23889.1 37 VLGLNGAGKSTLLRIMAGV---D 56
                789*************887...3 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 7.2e-09
      AAA_21 185 lqrlvrslklveielsdlgegeeliasvderlrer..gvvflengdgqelparel.....SdGtkrllalltallralkkgsllliDEpEngLHPkllr 276
                 l + + ++ ++++  ++l +   ++++++ +++    ++ +++  d   lp++++     S G kr  al  +ll+ +   + ll+DEp n+L+ + ++
  EGE23889.1 104 LNQIYAEYAEPDADFDKLAAEQGKMEDIIQAWDAHnlNTQLEKAADALRLPPWDAdvsklSGGEKRRVALCRLLLSKP---DMLLLDEPTNHLDAESVA 199
                 555666666666666666666666666666666666666666666777777777777777*******78777777766...****************** PP

      AAA_21 277 rllellkelsrngaQviltTHSpllld 303
                  l ++lk+ s     +++ TH+ ++ld
  EGE23889.1 200 WLERFLKDYSG---TIVAITHDRYFLD 223
                 *********99...********98886 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 6.8e-05
      AAA_21   2 nvliGpNgsGKSnLLdal 19 
                  +++GpNg+GK++L+  +
  EGE23889.1 352 VGIVGPNGAGKTTLFNMI 369
                 68************9765 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0059
      AAA_21 219 r.............gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellk 283
                                 +f+ +g++q+  + +lS G +  l l+  l + +    ++l+DEp n L+ + lr l + + 
  EGE23889.1 414 MitvgeyttpsrayIGRFNFKGQDQQKLVGNLSGGERNRLQLAKTLKQGA---NVILLDEPSNDLDVETLRALEDAVQ 488
                 04444555555566778888999999999999999999989999999888...89************99998865555 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       5.9     3e+03      31      52 ..     116     137 ..      97     151 .. 0.68
   2 !   45.0  12.4   1.6e-14   8.1e-12       1      78 [.     230     305 ..     230     312 .. 0.89
   3 !   10.5   0.1   0.00091      0.47       5      34 ..     516     545 ..     512     552 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.9
  ABC_tran_Xtn  31 kayekqqkeikkleefIerfra 52 
                   ++++k  +e  k+e++I+ + a
    EGE23889.1 116 ADFDKLAAEQGKMEDIIQAWDA 137
                   5566667777778888877666 PP

  == domain 2  score: 45.0 bits;  conditional E-value: 1.6e-14
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekpee 78 
                   +el++g  + Y+GnY+e+le+k++rleq+qk++e+  k +k++ e+++++++   ++++ +sr  ++e ++  e +++
    EGE23889.1 230 LELDRGYGYPYQGNYTEWLEQKNKRLEQEQKQEEAFAKALKQELEWVRKNQK--GQQAKSKSRLERFEEMNSREFQQR 305
                   699***********************************************99..566679**********88776643 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00091
  ABC_tran_Xtn   5 ngklteYkGnYseyleekeerleqqqkaye 34 
                   n+  + ++GnYsey + ++erl + ++  +
    EGE23889.1 516 NEAPEFFDGNYSEYEKWRKERLGADAAPKR 545
                   55556799*************987766555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1      0.04        20      27      41 ..      35      49 ..      20      55 .. 0.75
   2 !   11.3   0.0   0.00033      0.17     133     205 ..     159     225 ..      93     232 .. 0.76
   3 !    9.5   0.1    0.0012       0.6      26      44 ..     351     369 ..     324     374 .. 0.84
   4 ?    4.7   0.0     0.035        18     113     198 ..     398     500 ..     376     513 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.04
                EEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnll 41
                  ++G NG+GKs ll
  EGE23889.1 35 IGVLGLNGAGKSTLL 49
                4599********987 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00033
                 STTCS-HHHHHHHHH.HHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 133 skelLSgGektLval.aLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 + + LSgGek  val  Ll++    kp  + llDe   +LD++ v+ + ++lk  s    ++ i++++ +l ++
  EGE23889.1 159 DVSKLSGGEKRRVALcRLLLS----KP-DMLLLDEPTNHLDAESVAWLERFLKDYS--GTIVAITHDRYFLDNV 225
                 4449*****987776155543....44.4789*********************999..6677888888877765 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0012
                 EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAi 44 
                 +  ivGpNG+GK+ l++ i
  EGE23889.1 351 IVGIVGPNGAGKTTLFNMI 369
                 5679*********999876 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.035
                 ETTEEE-HHHHHHHHHCTT-STT.......................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 113 ingkevtkkevsellesagiske.......................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksk 188
                 +++k+   +evs+ l +  + +                        +LSgGe+      L +A    + a + llDe    LD +  +++ + ++    
  EGE23889.1 398 LDDKKTVWEEVSDGLDMITVGEYttpsrayigrfnfkgqdqqklvgNLSGGERN----RLQLAKTLKQGANVILLDEPSNDLDVETLRALEDAVQVFP- 491
                 55555555666666666555555666666666666666666667769*****98....566777789999***************9999988887655. PP

                 TSEEEEE-SS CS
                 xxxxxxxxxx RF
       SMC_N 189 naQfivislr 198
                    ++v+s++
  EGE23889.1 492 -GTVMVVSHD 500
                 .556666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00077       0.4       1      25 [.      34      58 ..      34      84 .. 0.79
   2 !   15.6   0.1   2.5e-05     0.013       2      23 ..     352     373 ..     351     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00077
                EEEEEESTTSSHHHHHHHHHTSTEE CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltgekai 25
                +++++G   +GKStL++ + g   +
  EGE23889.1 34 KIGVLGLNGAGKSTLLRIMAGVDTE 58
                699**************99985443 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.5e-05
                 EEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgek 23 
                 v+ivG   +GK+tL+n +tg+ 
  EGE23889.1 352 VGIVGPNGAGKTTLFNMITGKD 373
                 89*****************972 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1    0.0016      0.81      24      47 ..      37      60 ..      22      91 .. 0.77
   2 ?    4.2   3.3      0.11        56     153     195 ..     250     297 ..     183     310 .. 0.62
   3 !   21.0   0.3   7.5e-07   0.00039      21      40 ..     351     370 ..     324     371 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0016
      AAA_23 24 ItGpNGaGKTTildAiklaLyget 47
                + G NGaGK+T+l+ +  + ++++
  EGE23889.1 37 VLGLNGAGKSTLLRIMAGVDTEFS 60
                6799*********98776655555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.11
      AAA_23 153 erleelekeleeledekkllekl.....eqekekekeleeleeeleei 195
                 ++ + le+e++++e+++k l+++     +++k ++++ +   e++ee+
  EGE23889.1 250 QKNKRLEQEQKQEEAFAKALKQElewvrKNQKGQQAKSKSRLERFEEM 297
                 222333444444444444444444444644444444444444444443 PP

  == domain 3  score: 21.0 bits;  conditional E-value: 7.5e-07
      AAA_23  21 ltlItGpNGaGKTTildAik 40 
                 ++ I+GpNGaGKTT+++ i+
  EGE23889.1 351 IVGIVGPNGAGKTTLFNMIT 370
                 789**************997 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.019       9.9     104     123 ..      37      56 ..      11      68 .. 0.80
   2 !   14.9   0.0   3.7e-05     0.019     100     131 ..     350     381 ..     318     388 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.019
                  EECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 104 lvGqSGvGKStLinallpel 123
                  ++G  G+GKStL+  +++ +
   EGE23889.1  37 VLGLNGAGKSTLLRIMAGVD 56 
                  6899*********9988754 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.7e-05
                  SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevs 131
                   ++ +vG+ G+GK+tL n+++++++  tg v 
   EGE23889.1 350 AIVGIVGPNGAGKTTLFNMITGKDTPDTGTVE 381
                  67779*****************9998888775 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.5    0.0046       2.4       1      78 [.      35     117 ..      35     353 .. 0.74
   2 !    9.6   0.0    0.0018      0.91       1      31 [.     352     382 ..     352     432 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0046
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE...CCT---C.....CS...SSEEEET-EB--CHHHHHHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql...geeeeas.....eravkeelkekekkledfsevreeieketek 78 
                 i v+G   +GKS++l  + g d   +g+    r+ + ++     +e++        ++v++ ++e  + le ++++  e+ +  + 
  EGE23889.1  35 IGVLGLNGAGKSTLLRIMAGVDTEFSGE---ARAATGIKIgylPQEPQLDpakdvRGNVEDGVREALDALERLNQIYAEYAEPDAD 117
                 78999999*************9544444...4444444441142333332544444455555555566666666666655544433 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0018
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnpt 31 
                 + +vG   +GK+++ n ++g+d   +g+  +
  EGE23889.1 352 VGIVGPNGAGKTTLFNMITGKDTPDTGTVEV 382
                 679*******************655666554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.2    0.0038       1.9      27      39 ..      37      49 ..      26      55 .. 0.86
   2 !   10.9   0.0   0.00059       0.3      21      39 ..     348     366 ..     338     372 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0038
      AAA_29 27 ltGpsGsGKSTll 39
                + G +G+GKSTll
  EGE23889.1 37 VLGLNGAGKSTLL 49
                7899********8 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00059
      AAA_29  21 lkgatlltGpsGsGKSTll 39 
                 +  ++ ++Gp+G+GK+Tl+
  EGE23889.1 348 PMAIVGIVGPNGAGKTTLF 366
                 4456679**********98 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0019      0.97      26      87 ..     156     204 ..     137     207 .. 0.71
   2 ?    4.5   0.3     0.079        40      27      83 ..     439     482 ..     417     488 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0019
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllel 87 
                 +++++++lSGGek+ +a   l       + s      ++++++LDE  + lD+es+a l ++
  EGE23889.1 156 WDADVSKLSGGEKRRVALCRL-------LLS------KPDMLLLDEPTNHLDAESVAWLERF 204
                 577889999999944333333.......333......4899999999999999998766555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.079
     SbcCD_C  27 srssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiat 83 
                 ++ +g+lSGGe+  l +l      a  +      ++   +++LDE  + lD e++++
  EGE23889.1 439 QKLVGNLSGGERNRL-QL------AKTL------KQGANVILLDEPSNDLDVETLRA 482
                 566777777777322.11......1222......23455677777777777776665 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.027        14       1      36 [.      34      71 ..      34      86 .. 0.81
   2 ?   -1.4   0.0       5.1   2.6e+03      76     103 ..     204     233 ..     196     237 .. 0.70
   3 !   10.5   0.1    0.0011      0.55       4      46 ..     354     396 ..     352     410 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.027
                EEEEESSTTSSHHHHHHCH..CT-CCC-EEETTTTEEE CS
         Roc  1 KvvlvGdsgvGKtsllkrf..vedkfsekekstigvdf 36
                K+ ++G +g+GK++ll+ +  v+ +fs + ++ +g+++
  EGE23889.1 34 KIGVLGLNGAGKSTLLRIMagVDTEFSGEARAATGIKI 71
                8999***********98652256788888888877765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 5.1
                 HHCTSCEEEEEEE.GHHH.HCHHHHHHHHH CS
         Roc  76 ylreaalailvyd.srss.enlkeWlkelk 103
                 +l++ +  i+ ++ +r + +n+ eW+ el+
  EGE23889.1 204 FLKDYSGTIVAIThDRYFlDNVAEWILELD 233
                 6777777777665244445899***99986 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.0011
                 EESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGG CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikg 46 
                 +vG +g+GKt+l++ ++ ++  ++ +  +g +++   v +++ 
  EGE23889.1 354 IVGPNGAGKTTLFNMITGKDTPDTGTVEVGESVKVAYVGQVRD 396
                 8*****************9999999999999998777655544 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.22   1.1e+02      23      38 ..      35      50 ..      21      59 .. 0.89
   2 ?   -0.2   0.0      0.88   4.5e+02      80     111 ..     157     188 ..     145     202 .. 0.84
   3 !   12.0   0.0   0.00017     0.085      20      43 ..     349     372 ..     337     421 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.22
                EEEEESTTSSHHHHHH CS
      NB-ARC 23 valvGmgGvGKttlak 38
                +++ G  G GK+tl++
  EGE23889.1 35 IGVLGLNGAGKSTLLR 50
                7999**********86 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.88
                 CTTSSSS-STTSHHHHHHHHCCCTTEEEEEEE CS
      NB-ARC  80 eddleekeeveslkrklvrlLltkrfllvlDD 111
                 ++d ++ + +e++   l+rlLl+k  +l+lD 
  EGE23889.1 157 DADVSKLSGGEKRRVALCRLLLSKPDMLLLDE 188
                 567777777888999*********99999995 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00017
                 SEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  20 slvvalvGmgGvGKttlakqilnk 43 
                 + +v++vG  G GKttl++ i  k
  EGE23889.1 349 MAIVGIVGPNGAGKTTLFNMITGK 372
                 469****************99877 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1      0.06        31       4      20 ..      36      52 ..      33      66 .. 0.83
   2 !   11.7   0.1   0.00029      0.15       2      25 ..     351     374 ..     350     411 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.06
                EEEESTTCCHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhl 20
                ++ G  G+GK+tLl+ +
  EGE23889.1 36 GVLGLNGAGKSTLLRIM 52
                678999********865 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00029
                 EEEEEESTTCCHHHHHHHHHCT-- CS
        cobW   2 vtvltGflGsGKTtLlnhllenra 25 
                 +++++G+ G+GKTtL n ++ +  
  EGE23889.1 351 IVGIVGPNGAGKTTLFNMITGKDT 374
                 5789*************9985444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2      0.11        58      10      26 ..      37      53 ..      33     218 .. 0.79
   2 !   11.2   0.1   0.00066      0.34      10     103 ..     354     475 ..     350     498 .. 0.57

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.11
      AAA_22 10 vtGesGtGKTtllrrll 26
                v G  G+GK+tllr ++
  EGE23889.1 37 VLGLNGAGKSTLLRIMA 53
                56889999999998665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00066
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsst..sskdllrellralglelka.........................erlss 75 
                 ++G+ G+GKTtl ++++ +++ +    +      e+++v++v    ++  + k++++e+   l+  + +                         +    
  EGE23889.1 354 IVGPNGAGKTTLFNMITGKDTPD----TgtvevgESVKVAYVGQVRDEldDKKTVWEEVSDGLDMITVGeyttpsrayigrfnfkgqdqqklvgNLSGG 448
                 89**************9998533....133446655555544444444455555555555555555555655555555555555444444444433344 PP

      AAA_22  76 eellealeqalraravielliiDEaqh.l 103
                 e+ + +l++ l++ a   ++++DE  + l
  EGE23889.1 449 ERNRLQLAKTLKQGAN--VILLDEPSNdL 475
                 4444444444444444..66666666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.018       9.2       5      19 ..      38      52 ..      35      60 .. 0.85
   2 ?   -1.6   0.0       5.2   2.6e+03     121     135 ..     257     271 ..     177     301 .. 0.71
   3 !   10.3   0.3    0.0012      0.61       3      77 ..     353     470 ..     351     497 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.018
      AAA_33  5 vGlpGsGKstlaerl 19
                 Gl+G+GKstl++ +
  EGE23889.1 38 LGLNGAGKSTLLRIM 52
                6**********9855 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.2
      AAA_33 121 ngddrsevpeealdr 135
                 +++++ e+  +al++
  EGE23889.1 257 QEQKQEEAFAKALKQ 271
                 333333333333333 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0012
      AAA_33   3 llvGlpGsGKstlaerllkklg....avllssdt........................................lrrrlfgtdqqsktdytrvldrlyq 57 
                  +vG++G+GK+tl   +  k +    +v + + +                                        ++ r   ++q++++   +++   ++
  EGE23889.1 353 GIVGPNGAGKTTLFNMITGKDTpdtgTVEVGESVkvayvgqvrdelddkktvweevsdgldmitvgeyttpsraYIGRFNFKGQDQQKLVGNLSGGERN 451
                 579**********99998888878655556666666655555555555555555555555555555555544443333333444443344445555666 PP

      AAA_33  58 ilnelarkalsagrnvil.da 77 
                 +l +la k+l++g+nvil d 
  EGE23889.1 452 RL-QLA-KTLKQGANVILlDE 470
                 66.555.67777777666455 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0029       1.5      15      34 ..      33      52 ..      20      59 .. 0.84
   2 ?    4.7   0.0     0.036        18      19      39 ..     354     374 ..     344     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0029
                EEEEEEESTTSSHHHHHHHH CS
         Arf 15 lrilllGLDnaGKtTilkkl 34
                ++i +lGL +aGK+T+l  +
  EGE23889.1 33 AKIGVLGLNGAGKSTLLRIM 52
                6899************9765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.036
                 EEESTTSSHHHHHHHHHHSSC CS
         Arf  19 llGLDnaGKtTilkklkleel 39 
                 ++G  +aGKtT+ ++++ +++
  EGE23889.1 354 IVGPNGAGKTTLFNMITGKDT 374
                 78999**********998876 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.03        15      31      46 ..      37      52 ..      22      66 .. 0.82
   2 ?   -1.0   0.9       2.2   1.1e+03     163     204 ..     246     287 ..     232     302 .. 0.67
   3 ?    9.1   0.0    0.0018       0.9      17      46 ..     340     369 ..     333     371 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.03
      AAA_27 31 iyGpNEAGKstalrAi 46
                ++G N AGKst+lr +
  EGE23889.1 37 VLGLNGAGKSTLLRIM 52
                79**********9855 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.2
      AAA_27 163 eaLeaeadelfkprkskkrainealeeleeakkelreaqvra 204
                 e Le++ ++l +++k++++ +++ ++ele ++k+ + +q ++
  EGE23889.1 246 EWLEQKNKRLEQEQKQEEAFAKALKQELEWVRKNQKGQQAKS 287
                 566777777777777777444444555666666666665554 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0018
      AAA_27  17 rsldfsaeeadlhliyGpNEAGKstalrAi 46 
                 ++l+f      +  i+GpN AGK+t+++ i
  EGE23889.1 340 ENLSFTVPPMAIVGIVGPNGAGKTTLFNMI 369
                 67888888888888***********99866 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0015      0.77      12      48 ..      15      51 ..       6      66 .. 0.84
   2 ?    3.1   0.1     0.075        38      29      50 ..     349     370 ..     324     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0015
                SHHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHH CS
        MeaB 12 rpeakellerllakaGraqvvGltGvPGaGkstlvea 48
                 p  +e+l+ ++ +     ++G+ G+ GaGkstl+  
  EGE23889.1 15 VPPKREILKDISLSFFPGAKIGVLGLNGAGKSTLLRI 51
                5667889999999999999**************9865 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.075
                 SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  29 aqvvGltGvPGaGkstlvealg 50 
                    vG+ G  GaGk tl + ++
  EGE23889.1 349 MAIVGIVGPNGAGKTTLFNMIT 370
                 5689*************98765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.024        12       3      27 ..      33      53 ..      31     114 .. 0.84
   2 ?    8.8   0.1    0.0024       1.2       5      24 ..     352     375 ..     349     438 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.024
      AAA_24  3 lkiliyGpsgiGKTtlakelgpkpl 27
                +ki + G +g+GK+tl++ +    +
  EGE23889.1 33 AKIGVLGLNGAGKSTLLRIM----A 53
                799*************9988....3 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0024
      AAA_24   5 iliyGpsgiGKTtlakel....gp 24 
                 + i+Gp+g+GKTtl +++    +p
  EGE23889.1 352 VGIVGPNGAGKTTLFNMItgkdTP 375
                 679***********9998765544 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.59     3e+02       6      22 ..      36      52 ..      33      61 .. 0.85
   2 ?   -2.2   0.0       7.9   4.1e+03      64      90 ..     180     208 ..     161     217 .. 0.66
   3 ?    7.2   0.0    0.0093       4.8       4      26 ..     351     373 ..     349     409 .. 0.82
   4 ?   -0.5   0.0       2.3   1.2e+03      54      76 ..     452     474 ..     419     492 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.59
      AAA_14  6 vitGaRrvGKTtllkql 22
                 + G+  +GK+tll+ +
  EGE23889.1 36 GVLGLNGAGKSTLLRIM 52
                588999*******9765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 7.9
      AAA_14  64 kktylflDEiqevpewe..kalkslvdeg 90 
                 k  +l+lDE  +  ++e   +l ++++++
  EGE23889.1 180 KPDMLLLDEPTNHLDAEsvAWLERFLKDY 208
                 56789999988875555114566666665 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0093
      AAA_14   4 ilvitGaRrvGKTtllkqlikel 26 
                 i+ i+G+  +GKTtl + +  + 
  EGE23889.1 351 IVGIVGPNGAGKTTLFNMITGKD 373
                 899************87776554 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 2.3
      AAA_14  54 elilek.lkeekktylflDEiqev 76 
                 +l l+k lk+ + ++++lDE ++ 
  EGE23889.1 452 RLQLAKtLKQ-GANVILLDEPSND 474
                 3333332444.8999****97765 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.047        24      26      54 ..      33      61 ..      21      75 .. 0.84
   2 ?    6.8   0.1     0.005       2.6      27      73 ..     351     403 ..     342     415 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.047
        DLIC 26 ksvlvlGedgsGkttliaklqGveeekkG 54
                 ++ vlG +g+Gk+tl+  + Gv+ e  G
  EGE23889.1 33 AKIGVLGLNGAGKSTLLRIMAGVDTEFSG 61
                45889******************987766 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.005
        DLIC  27 svlvlGedgsGkttliaklqGveeekk.....GrGleylyl.dvkdedrddlt 73 
                  v ++G +g+Gkttl   + G + +       G  +  +y+ +v+de  d +t
  EGE23889.1 351 IVGIVGPNGAGKTTLFNMITGKDTPDTgtvevGESVKVAYVgQVRDELDDKKT 403
                 56789****************99876511111567889999457776555444 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.9   4.6e+02       2      25 ..      34      57 ..      33      64 .. 0.86
   2 ?   10.4   0.2   0.00067      0.34       3      24 ..     352     373 ..     350     380 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.9
                EEEEEESTTSSHHHHHHHHHTTSE CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgakq 25
                ++ ++G   +Gk+tl+  ++g+++
  EGE23889.1 34 KIGVLGLNGAGKSTLLRIMAGVDT 57
                577899999*******99999876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00067
                 EEEEESTTSSHHHHHHHHHTTS CS
      FeoB_N   3 valvGnpnvGkttlfnaltgak 24 
                 v +vG   +Gkttlfn +tg++
  EGE23889.1 352 VGIVGPNGAGKTTLFNMITGKD 373
                 67899999***********986 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.39     2e+02      23      36 ..      39      52 ..      34      59 .. 0.84
   2 ?    7.6   0.0    0.0042       2.1      19      49 ..     352     382 ..     342     388 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.39
  Zeta_toxin 23 GqpGAGKselaell 36
                G  GAGKs+l++ +
  EGE23889.1 39 GLNGAGKSTLLRIM 52
                668*******9976 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0042
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrl 49 
                 + ++G  GAGK++l ++++ + +++ + v++
  EGE23889.1 352 VGIVGPNGAGKTTLFNMITGKDTPDTGTVEV 382
                 44889*************9987777777766 PP

>> DUF5113  Domain of unknown function (DUF5113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00052      0.27      20      81 ..      86     144 ..      81     150 .. 0.84
   2 ?   -2.1   0.2       5.7   2.9e+03     124     138 ..     248     262 ..     235     285 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00052
     DUF5113  20 vegeyeeALeyldsaleylNahyekYakkkadtldklkmllegegeaaelkWlkdekfktdy 81 
                 v+g+ e+ ++ +  ale lN+ y +Ya+ +a   dkl   ++g+ e + ++W + ++++t  
  EGE23889.1  86 VRGNVEDGVREALDALERLNQIYAEYAEPDA-DFDKLA-AEQGKMEDIIQAWDA-HNLNTQL 144
                 78899999999999***************96.788875.788888888899998.6999876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.7
     DUF5113 124 Lesycrqlersaknk 138
                 Le++ ++le+++k+ 
  EGE23889.1 248 LEQKNKRLEQEQKQE 262
                 333333333333332 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.5     0.097        50      23      43 ..      37      57 ..      32      68 .. 0.83
   2 ?    9.1   0.4    0.0019      0.99      20      58 ..     351     394 ..     344     499 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.097
      AAA_30 23 ltGpAGtGKttalkalreawe 43
                + G  G+GK+t+l+ ++ + +
  EGE23889.1 37 VLGLNGAGKSTLLRIMAGVDT 57
                57999********99887665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0019
      AAA_30  20 vavltGpAGtGKttalkalreaweaa.g....grviglAptgka 58 
                 ++ ++Gp G+GKtt+ + ++   + + g    g+ + +A  g++
  EGE23889.1 351 IVGIVGPNGAGKTTLFNMITGKDTPDtGtvevGESVKVAYVGQV 394
                 6789*************998887777344444333444444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0048       2.5       1      70 [.      35     123 ..      35     155 .. 0.46
   2 ?    7.5   0.1     0.011       5.6       1      43 [.     352     400 ..     352     446 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0048
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gfgvnlrdvakenglllevdpe..aldeskrldedkldklldaleenss................a 70 
                 I++ G  G+GK+tl +  +    +f+ + r     +  +l+++p+    ++ +  +ed + ++ldale+ ++                a
  EGE23889.1  35 IGVLGLNGAGKSTLLRIMAGVDtEFSGEARAATGIKIGYLPQEPQldPAKDVRGNVEDGVREALDALERLNQiyaeyaepdadfdklaA 123
                 899************99954443332222222222222222222222122222222222333333333333344444444444444432 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.011
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.......gvnlrdvakenglllevdp 43 
                 +++ G+ G+GKttl + +  +          + ++ +va+ ++ ++e d+
  EGE23889.1 352 VGIVGPNGAGKTTLFNMITGK-DTpdtgtveVGESVKVAYVGQVRDELDD 400
                 689***********9887443.1223344554444555555554444444 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00052      0.27       6      34 ..     352     380 ..     348     403 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
                 EEEE-STTSSHHHHHHHHHHSS---B--- CS
       SRPRB   6 vllvGlsdsGKTslftrLttdsvkktvtS 34 
                 v +vG+  +GKT+lf+ +t + + +t t 
  EGE23889.1 352 VGIVGPNGAGKTTLFNMITGKDTPDTGTV 380
                 559****************9988777654 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.091        47       2      27 ..      35      60 ..      34      72 .. 0.78
   2 ?   -1.6   0.4       5.3   2.7e+03      42     141 ..     255     269 ..     237     311 .. 0.57
   3 ?    9.1   0.0    0.0028       1.4       4      39 ..     354     394 ..     351     416 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.091
      AAA_28  2 ivitGgestGKTtlleaLaargypvv 27
                i ++G  ++GK+tll+ +a  +++  
  EGE23889.1 35 IGVLGLNGAGKSTLLRIMAGVDTEFS 60
                6678999*********9996655554 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.3
      AAA_28  42 gedalpwvedllafaervleeqleeeaaaaankvlfcDrglldtlaYarayggeaeaeleaaarekrydlvfllppapeidddgeRredleereaider 140
                  e++ +   +  afa+                                                                                  +
  EGE23889.1 255 LEQEQK---QEEAFAK----------------------------------------------------------------------------------A 268
                 222221...2222222..................................................................................2 PP

      AAA_28 141 l 141
                 l
  EGE23889.1 269 L 269
                 2 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0028
      AAA_28   4 itGgestGKTtlleaLaar.....gypvvpEaareileekl 39 
                 i+G+ ++GKTtl + ++ +     g++ v E++   +  + 
  EGE23889.1 354 IVGPNGAGKTTLFNMITGKdtpdtGTVEVGESVKVAYVGQV 394
                 99*************99442344466666776665555555 PP

>> MRP-L46  39S mitochondrial ribosomal protein L46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.9    0.0018      0.94      23      85 ..     241     304 ..     238     320 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0018
                 HHHH....HHHHHHHHHHT----HHHHTTHHHHHHHHHHH---------.....-.---HHHHH CS
     MRP-L46  23 EkefYkYqkellerlelefskyfyfkkgtlaelkfkelkkklterdeevardigk.pdlrqere 85 
                 + ++ ++ ++ ++rle+e  ++ +f k+ ++el++ ++++k ++ ++++  ++ +  + r+ ++
  EGE23889.1 241 QGNYTEWLEQKNKRLEQEQKQEEAFAKALKQELEWVRKNQKGQQAKSKSRLERFEeMNSREFQQ 304
                 55788999***************************88777777766554332222022222222 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0038       1.9      23      43 ..      39      59 ..      36     150 .. 0.72
   2 ?   -3.0   6.1         4     2e+03     112     170 ..     248     302 ..     240     313 .. 0.40
   3 ?    5.9   0.1    0.0081       4.1      21      38 ..     354     371 ..     352     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0038
      AAA_13 23 GwNGaGKTtLSrllrslelge 43
                G NGaGK+tL r+++ + ++ 
  EGE23889.1 39 GLNGAGKSTLLRIMAGVDTEF 59
                99*************996543 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4
      AAA_13 112 leaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfkerllkel 170
                 le++++ l++++k++++++k l++e+   + + kn++ ++a k+ ++ e+f+e   +e+
  EGE23889.1 248 LEQKNKRLEQEQKQEEAFAKALKQELEW-V-R-KNQKGQQA-KSKSRLERFEEMNSREF 302
                 4444444555555545555545444432.2.1.12222222.12222222222222333 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0081
      AAA_13  21 iYGwNGaGKTtLSrllrs 38 
                 i G NGaGKTtL +++  
  EGE23889.1 354 IVGPNGAGKTTLFNMITG 371
                 569*********999876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.5      0.17        86       5      18 ..      37      50 ..      34      55 .. 0.85
   2 ?    6.0   0.1      0.02        10       3      20 ..     352     369 ..     350     377 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.17
                EEC-TTTCHHHHHH CS
       NACHT  5 lqGeaGsGKTtLlq 18
                + G +G GK+tLl+
  EGE23889.1 37 VLGLNGAGKSTLLR 50
                7899********98 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.02
                 EEEEC-TTTCHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkl 20 
                 v + G++G GKTtL   +
  EGE23889.1 352 VGIVGPNGAGKTTLFNMI 369
                 5699**********8766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   7.0       1.8     9e+02      29     158 ..      37     204 ..      32     307 .. 0.63
   2 ?    7.7   0.1    0.0081       4.1      26      51 ..     351     376 ..     337     497 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.8
      AAA_16  29 lsGesGvGKsslvrellralekd...........ggiflrgkcdqlesaipy........salaqalareellrqlldeaesaeleawrekleeala.. 106
                 + G  G GKs+l+r  +  + ++           ++ +l ++ +  +             + + +al++ e l+q+ +e   ae++a+ +kl ++ +  
  EGE23889.1  37 VLGLNGAGKSTLLRIMA-GVDTEfsgearaatgiKIGYLPQEPQLDP----AkdvrgnveDGVREALDALERLNQIYAE--YAEPDADFDKLAAEQGkm 128
                 78999999999997666.34444333355555553333444444441....1222234433366666666666666666..333333333333333333 PP

      AAA_16 107 ..............................avpelagaeasrllellkrllallsrderplvlvlDd.lqwadeaslqllaaL 158
                                               +v++l+g   +  + +l rll  ls+   p  l+lD+    +d++s ++l+ +
  EGE23889.1 129 ediiqawdahnlntqlekaadalrlppwdaDVSKLSGG--EKRRVALCRLL--LSK---PDMLLLDEpTNHLDAESVAWLERF 204
                 33333444444444334444444444333333333333..33333344444..222...333444431445666666665555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0081
      AAA_16  26 lvllsGesGvGKsslvrellralekd 51 
                 +v ++G+ G GK++l +++    + d
  EGE23889.1 351 IVGIVGPNGAGKTTLFNMITGKDTPD 376
                 6779***********99988655555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.18        91       6      22 ..      37      53 ..      33      59 .. 0.83
   2 ?    5.7   0.6      0.02        10       4      18 ..     352     366 ..     349     372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.18
                EEESTTSSHHHHHHHHH CS
       SRP54  6 lvGlqGaGKTttlaKLa 22
                ++Gl+GaGK t l  +a
  EGE23889.1 37 VLGLNGAGKSTLLRIMA 53
                79*********987666 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.02
                 EEEEESTTSSHHHHH CS
       SRP54   4 illvGlqGaGKTttl 18 
                 + +vG++GaGKTt  
  EGE23889.1 352 VGIVGPNGAGKTTLF 366
                 668**********76 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       1.6   8.1e+02       3      19 ..      37      53 ..      35      74 .. 0.88
   2 ?   -1.2   0.5       4.9   2.5e+03      75     100 ..     255     280 ..     249     293 .. 0.82
   3 ?    9.4   0.1    0.0026       1.3       3      66 ..     354     470 ..     352     473 .. 0.51

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.6
                EESSTTSSHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakava 19
                + G  G GK++l + +a
  EGE23889.1 37 VLGLNGAGKSTLLRIMA 53
                57999*******99987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.9
                 TTCCCHHHHHHHHHHHHHHHHTTTSS CS
         AAA  75 sgseseeeervvnqLlteldgvkkke 100
                  ++e+++ee  +++L +el++v+k++
  EGE23889.1 255 LEQEQKQEEAFAKALKQELEWVRKNQ 280
                 45678899999999999999999874 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0026
                 EESSTTSSHHHHHHHHHHH.............HTHE........................................EEEEETTTCSSSSTTHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavake.............lgve........................................fleisgsellskyvgesekkire 48 
                 ++Gp G GKT+l + +  +             ++v                                          ++++g +   k+vg+ +   r+
  EGE23889.1 354 IVGPNGAGKTTLFNMITGKdtpdtgtvevgesVKVAyvgqvrdelddkktvweevsdgldmitvgeyttpsrayigRFNFKGQDQQ-KLVGNLSGGERN 451
                 79**************9995544443332222122233333333333333333333333333333333333333333333333333.477777777777 PP

                 HHHHHHHTS.TSEEEEEET CS
         AAA  49 lfkeakeka.kpsilfiDE 66 
                  ++ ak+ + +  ++++DE
  EGE23889.1 452 RLQLAKTLKqGANVILLDE 470
                 7777766665447777777 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       1.4   7.2e+02       2      17 ..      35      50 ..      34      57 .. 0.82
   2 ?    0.2   0.1       1.2     6e+02      24      99 ..     234     312 ..     224     313 .. 0.63
   3 ?    5.7   0.6     0.024        12       2      20 ..     352     370 ..     351     380 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.4
                EEEE--TTSSHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvk 17
                + + G  G GK+Tl++
  EGE23889.1 35 IGVLGLNGAGKSTLLR 50
                6677999*******86 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
                 ...GGGEEEEEEEEE-------EEEEEE...T.T--EEEEEETT---SSEETTEEE-HHHHHHHHHHHHHHHHHHH-EE CS
    NTPase_1  24 kssgvkvgGfyteevreggrrigFkivd...lasgeegiLarveakreprvgkyvvdvesfeelalealrkalseadvi 99 
                 +  g++++G yte   ++++r   +  +    a+  +++L  v+++++ +  k + ++e+fee+ ++ +++ +++a+++
  EGE23889.1 234 RGYGYPYQGNYTEWLEQKNKRLEQEQKQeeaFAKALKQELEWVRKNQKGQQAKSKSRLERFEEMNSREFQQRNETAEIY 312
                 5668899999999999998887655443111344445555555566666666777777777777777777776666665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.024
                 EEEE--TTSSHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvl 20 
                 v i Gp G GKtTl++ ++
  EGE23889.1 352 VGIVGPNGAGKTTLFNMIT 370
                 5789**********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1574  (0.0877907); expected 358.6 (0.02)
Passed bias filter:                      826  (0.0460706); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 3601.95
//
Query:       EGE23890.1  [L=106]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.5   0.7      0.041   14.2   0.4    1.9  1  MbeB_N    MbeB-like, N-term conserved region


Domain annotation for each model (and alignments):
>> MbeB_N  MbeB-like, N-term conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   2.3e-06     0.041       8      29 ..      47      68 ..      42      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-06
      MbeB_N  8 AktFeqkskeqaeSteemvksa 29
                A +Fe+k++++ ++t + v++a
  EGE23890.1 47 AEEFEKKARAERKITGKNVAAA 68
                89*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 787.86
//
Query:       EGE23891.1  [L=86]
Description: acetyltransferase-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-25   86.6   0.1      1e-24   86.4   0.1    1.0  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
    0.00012   22.3   0.0    0.00013   22.2   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0003   20.7   0.0    0.00033   20.6   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.024   15.1   0.0      0.026   14.9   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.1   2.3e-28     1e-24       1      75 [.      12      84 ..      12      86 .] 0.96

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 2.3e-28
  Acetyltransf_CG  1 rfeltldegeevafleYevrkegvldfthTeVpeelrGkGiAkkLvkaalddareeglkvvptCsyvaaylekhp 75
                     rfe+t+d g ++a+l+Y   ++++l+++hT+Vp++l+G+G++ +Lvk+a+++a +++++++p+Cs+va+y++k++
       EGE23891.1 12 RFETTID-G-HTAYLSYAIIDDNTLNYHHTFVPPQLGGRGVGTALVKYAVQYANQNNKTIIPSCSFVAHYINKQH 84
                     8*****8.6.89******9****************************************************9875 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.9e-08   0.00013      46      97 ..      22      70 ..      12      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.9e-08
                    EEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE CS
  Acetyltransf_1 46 GfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikki 97
                    +++s+ +i+d   ++   +  +V p+  g+G+G+aL+++++++a +++ + i
      EGE23891.1 22 AYLSYAIIDD---NTLNYHHTFVPPQLGGRGVGTALVKYAVQYANQNNKTII 70
                    5778888888...88888999*************************976655 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   7.3e-08   0.00033      46      86 ..      27      67 ..       6      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 7.3e-08
  Acetyltransf_10 46 ielrdgs.hisllfVdpeyrgqGigkaLleaveeeaekdgik 86
                     + ++d+    ++ fV p+  g+G+g+aL++++ ++a+++ +k
       EGE23891.1 27 AIIDDNTlNYHHTFVPPQLGGRGVGTALVKYAVQYANQN-NK 67
                     44533335999************************9554.44 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   5.9e-06     0.026      24      49 ..      30      62 ..      12      84 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.9e-06
                    S...TCTEEEEE-GGGTTSSHHHHHHHH....T CS
  Acetyltransf_7 24 d...aeitrlaVdpeyrgkGiGraLlea....a 49
                    d    ++++ +V p+  g+G+G+aL+++    a
      EGE23891.1 30 DdntLNYHHTFVPPQLGGRGVGTALVKYavqyA 62
                    33444555589****************733331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 623.97
//
Query:       EGE23892.1  [L=64]
Description: hypothetical protein EA1_07850 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 511.83
//
Query:       EGE23893.1  [L=157]
Description: hypothetical protein EA1_07855 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0095   15.3   0.0      0.011   15.1   0.0    1.1  1  7TM_GPCR_Srw  Serpentine type 7TM GPCR chemoreceptor Srw
  ------ inclusion threshold ------
      0.044   14.4   0.4      0.067   13.8   0.4    1.2  1  DUF2470       Protein of unknown function (DUF2470)
       0.27   11.9   7.0       0.56   10.9   7.0    1.6  1  DUF2946       Protein of unknown function (DUF2946)


Domain annotation for each model (and alignments):
>> 7TM_GPCR_Srw  Serpentine type 7TM GPCR chemoreceptor Srw
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.8e-06     0.011      85     156 ..      20      90 ..       5     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-06
  7TM_GPCR_Srw  85 kdvsrrlstwLgvlmAliRtlivkfpmsnkiqklskpkfglliilivlllsllisilyffrykiveeeekwk 156
                   +++s+r  +w+g ++A++ +l++  pm+++   + kpk g+ i + +  ++  i  ++++++++ +  ++++
    EGE23893.1  20 HQLSKRHRSWFGWVLAVLAWLMLLMPMTSSLW-VEKPKIGYNICIKLAPIINHINQSHQTHTHLHQAHTHFS 90 
                   68899************************995.9***********999999988888888877776655544 PP

>> DUF2470  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   1.1e-05     0.067       2      64 ..      66     131 ..      65     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHH-HHHHHHHHHHCS.T-TTCCEE.E.EEEE-SSEEEEEEC.....CEEEEEE-SS-- CS
     DUF2470   2 ariiaHMNkDHaddlllylrhyg.kvkeaksa.r.mtdidldgltlrlgakagsektvripFdppl 64 
                 a ii+H+N+ H++  +l   h + ++k+++++ +   di+l  + + l a+a + + + ++F+++l
  EGE23893.1  66 APIINHINQSHQTHTHLHQAHTHfSKKDNQTPhQhDCDICLSAMSFALPAGALGLSGHILQFNRQL 131
                 78**********98877776555555566444334999******9999655544778999998876 PP

>> DUF2946  Protein of unknown function (DUF2946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   7.0   9.4e-05      0.56      10     115 .]      41     154 ..      28     154 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.4e-05
     DUF2946  10 l...................av..laPavsqaaaaaaaasllagaicsadgsaysaaytaagagspasamdseaCgyCsllaagphlmpslsaslleaa 87 
                 +                   ++  laP++ +            +++ +++  + + a+t++++++ +++++  +C+ C      +++  +l a +l ++
  EGE23893.1  41 MllmpmtsslwvekpkigynICikLAPIINH----------INQSHQTHT--HLHQAHTHFSKKDNQTPHQ-HDCDIC-----LSAMSFALPAGALGLS 121
                 2223445566666666666533447888888..........222222222..2344556666665555555.59****.....4567777777777777 PP

     DUF2946  88 esasaaaaargaapalpallpaar......RAPP 115
                   + + ++++ga+ ++ +l           RA+P
  EGE23893.1 122 GHILQFNRQLGAFYRQLRLQFL-FflrppsRASP 154
                 7777777776666444433222.23555579988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1268.80
//
Query:       EGE23894.1  [L=509]
Description: pepSY-associated membrane protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-60  202.8   8.2    1.1e-59  202.4   8.2    1.2  1  PepSY_TM         PepSY-associated TM region
    0.00038   21.0  15.5     0.0063   17.0   0.8    4.2  4  DUF4405          Domain of unknown function (DUF4405)
     0.0033   17.4   7.9          2    8.4   1.5    3.9  3  PepSY_TM_like_2  Putative PepSY_TM-like
  ------ inclusion threshold ------
      0.014   15.6   6.9      0.067   13.3   0.4    3.5  3  DUF4079          Protein of unknown function (DUF4079)
      0.071   13.7   0.2        1.3    9.6   0.0    2.3  2  PepSY            Peptidase propeptide and YPEB domain
        3.6    7.7   5.3        2.6    8.2   0.6    2.7  3  TMEM190          Transmembrane protein 190
        8.7    6.7   8.1         10    6.4   0.1    3.1  3  DUF1772          Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.4   8.2   4.4e-63   1.1e-59       1     288 []      26     436 ..      26     436 .. 0.82

  Alignments for each domain:
  == domain 1  score: 202.4 bits;  conditional E-value: 4.4e-63
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF
    PepSY_TM   1 lrlHlwlGLivglfllvlalTGallvfkpeieawlnpellvvapaaaaallaa..........eaaaaaaaaaaaaaaaaatavvrtaa.......... 79 
                 +r+H+++GL+v +fl++la TG+ +++       + + l  v+p++++ + +                           + t+++   +          
  EGE23894.1  26 WRWHFYAGLFVIPFLVILAGTGLGMIILSNTVGKQGE-LISVSPQNTSMAVSHqahiatsniaG--------------GQVTQYIA--Pkddhhaaafl 107
                 9**********************99888776654444.44444444444432224444443321..............22222221..12233334444 PP

                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxx RF
    PepSY_TM  80 ......gekrsvfvdpytgevlgersgesasafaeflrrlHrglllgkpvGrllvglaallllvllvsGlilwwprrkkk.rfftfrpkkg.rrfwldl 170
                       +  + v++dpyt++++g+++++  s + ++l+++H +ll+gk+ G+ll++ aa+l+++l+++G++lww++rk   +++t++ +k  r +w+++
  EGE23894.1 108 vknhdtKVANWVAIDPYTAQIVGTQPQK--SGLYHTLDSIHGDLLMGKT-GDLLLETAASLTILLIITGIYLWWQKRKSViKMLTVQDTKTkRNLWREI 203
                 44556789999************86554..57777**************.*************************99999***********9******* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxxxx........... RF
    PepSY_TM 171 HnvlGvwllpfllllalTGlvwslaavlgaavkalvseg.............................aaaaaaaaaaaaaaaaaaaa........... 229
                 H+vlG w++++ll++++TGl+w+  +++g++++++++++                             +           +a++   +           
  EGE23894.1 204 HAVLGSWTAIVLLFFCITGLAWA--GIWGEKIMQAWNQFpagkwgvepvptsslpvdtahddasyqqqN-----------TADT---Phhatdisapth 286
                 **********************9..**************999998888888777666433333222111...........1111...123356666777 PP

                 ............................................................................................xxxxxxx RF
    PepSY_TM 230 ............................................................................................edladas 236
                                                                                                             e lad +
  EGE23894.1 287 gdalndgtkqvpwvlektpmpsstptsnawqmtqpdidfidnmaknmgfvgryqinypktptgvwsisqdsmsydspnptadrtvhidrysgEVLADIR 385
                 8889999*************************************************************************************6666666 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 237 lgdqslgakllewlypLHfGtffGlplrillfllglalaalivtGlvlWlkr 288
                 + d+s+  k+++++++LH+Gt  G+++ + ++l++l ++a++++Glv+W++r
  EGE23894.1 386 YHDYSAFGKFMAVGIALHMGTA-GIFSILANLLFCLSVIAICISGLVMWWQR 436
                 6666667**************8.9**************************99 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.86   2.2e+03      46      60 ..      28      42 ..      22      67 .. 0.75
   2 !   17.0   0.8   2.5e-06    0.0063      10      59 ..     166     216 ..     161     218 .. 0.76
   3 ?   -2.2   0.2       2.5   6.4e+03      50      63 ..     392     405 ..     387     406 .. 0.80
   4 !   12.6   0.1   6.2e-05      0.16       2      26 ..     414     438 ..     413     477 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.86
     DUF4405 46 iHeilgllflilvvl 60
                +H+++gl  + ++v+
  EGE23894.1 28 WHFYAGLFVIPFLVI 42
                666666666665554 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 2.5e-06
     DUF4405  10 flvlaiSGillsfavlpsgrgaywaflgl.....skhqwrdiHeilgllflilvv 59 
                  ++l+i+Gi l++    + + + + +l +     +++ wr+iH +lg +  i+++
  EGE23894.1 166 TILLIITGIYLWWQ---KRKSVIK-MLTVqdtktKRNLWREIHAVLGSWTAIVLL 216
                 589*********87...3344444.344445566999************999876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.5
     DUF4405  50 lgllflilvvlHlg 63 
                 +g  + + ++lH+g
  EGE23894.1 392 FGKFMAVGIALHMG 405
                 67789999999986 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 6.2e-05
     DUF4405   2 idlllllsflvlaiSGillsfavlp 26 
                  +ll  ls ++++iSG+++++   p
  EGE23894.1 414 ANLLFCLSVIAICISGLVMWWQRRP 438
                 689999**************88555 PP

>> PepSY_TM_like_2  Putative PepSY_TM-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   1.5   0.00077         2      96     176 ..     105     186 ..      20     192 .. 0.81
   2 ?    4.4   0.1     0.013        33     152     165 ..     211     224 ..     199     243 .. 0.67
   3 !    6.1   0.0    0.0038       9.8      91     169 ..     352     435 ..     300     452 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00077
  PepSY_TM_like_2  96 evylslprpggdasllidretge.veleetsrgwiallnDLHkGrntGeaWswfiDvfAvalvlfsltGllllqlhakkrka 176
                         ++       ++++id  t + v  + ++ g+   l+ +H     G++  ++++  A +++l+ +tG++l  +++k+  +
       EGE23894.1 105 AFLVKNHDTKVANWVAIDPYTAQiVGTQPQKSGLYHTLDSIHGDLLMGKTGDLLLETAASLTILLIITGIYLWWQKRKSVIK 186
                      455555666677889998777662567789999999******99****************************9999887655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.013
  PepSY_TM_like_2 152 fAvalvlfsltGll 165
                      +A++l++f++tGl+
       EGE23894.1 211 TAIVLLFFCITGLA 224
                      35555555555554 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0038
  PepSY_TM_like_2  91 ewsddevylslprpggdasllidretgev..eleetsrgwiallnDLHkGrntGeaWswfi..D.vfAvalvlfsltGllllql 169
                        s+d ++ + p+p  d ++ idr +gev  ++ + ++++ + +       + G+a  + i    +f + ++ ++++Gl++  +
       EGE23894.1 352 SISQDSMSYDSPNPTADRTVHIDRYSGEVlaDIRYHDYSAFGKFMAVGIALHMGTAGIFSIlaNlLFCLSVIAICISGLVMWWQ 435
                      45789999999****************983345566776666665555555666654444422336888888899999987654 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.06   1.5e+02      80      97 ..      25      42 ..      12      52 .. 0.79
   2 ?   13.3   0.4   2.6e-05     0.067      97     135 ..     185     223 ..     161     227 .. 0.89
   3 ?    1.2   0.0      0.15   3.8e+02       8      38 ..     413     444 ..     407     491 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.06
     DUF4079 80 fpssHlyaGlavvvLlal 97
                ++ +H+yaGl v+ +l++
  EGE23894.1 25 IWRWHFYAGLFVIPFLVI 42
                6899*****999866555 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.6e-05
     DUF4079  97 lsaalvpeiqkgkstaRtlHialnvlalllfawqaitGl 135
                 +++ +v++ +++++ +R++H++l++  +++++   itGl
  EGE23894.1 185 IKMLTVQDTKTKRNLWREIHAVLGSWTAIVLLFFCITGL 223
                 567889999999999999999999999999999999997 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.15
     DUF4079   8 lmvllvfpllgavaylG.wqtrqrrlqskaer 38 
                 l+ ll++++++a ++ G +++ qrr +++ ++
  EGE23894.1 413 LANLLFCLSVIAICISGlVMWWQRRPATNLHK 444
                 55566666666667777666777776666333 PP

>> PepSY  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.17   4.4e+02      10      61 ..      81     130 ..      76     132 .. 0.62
   2 ?    9.6   0.0   0.00051       1.3      24      61 ..     342     382 ..     330     383 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.17
                 HHHHHSTTEEEEEEEEEEE.TTEEEEEEEEE.EE.TTEEEEEEEETTT--EEE CS
       PepSY  10 iAlaavpgkiieieleded.dgrlvYevelstaepegpeyevfiDAkTGkvlk 61 
                 iA  ++ g +++ +++++d    +++ v+ ++   +++++   iD++T ++++
  EGE23894.1  81 IATSNIAGGQVTQYIAPKDdHHAAAFLVKNHD--TKVANWV-AIDPYTAQIVG 130
                 66666666666666666633555666666442..3555544.7****999876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00051
                 EEEEETTEEEEEEEEE.......EE.TTEEEEEEEETTT--EEE CS
       PepSY  24 lededdgrlvYevelst......aepegpeyevfiDAkTGkvlk 61 
                   ++ ++++v+ ++ ++      ++  +++++  iD ++G+vl+
  EGE23894.1 342 NYPK-TPTGVWSISQDSmsydspNPTADRTVH--IDRYSGEVLA 382
                 4566.999999999777799887666677799..********97 PP

>> TMEM190  Transmembrane protein 190
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.6     0.001       2.6      71      96 ..     166     191 ..     150     207 .. 0.75
   2 ?   -2.2   0.0       1.7   4.3e+03      57      75 ..     201     219 ..     189     230 .. 0.61
   3 ?    0.5   0.1      0.24   6.1e+02      66      92 ..     417     441 ..     405     453 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
     TMEM190  71 llllisliclfwwakrrdlyknlklp 96 
                  +lli +  ++ww kr+ + k l + 
  EGE23894.1 166 TILLIITGIYLWWQKRKSVIKMLTVQ 191
                 36778888899********7777654 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
     TMEM190  57 rkkhlwalsltciglllli 75 
                 r  h    s+t i ll++ 
  EGE23894.1 201 REIHAVLGSWTAIVLLFFC 219
                 4445555678888777653 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.24
     TMEM190  66 ltcigllllisliclfwwakrrdlykn 92 
                 l c  ++ +  +  ++ww +r     n
  EGE23894.1 417 LFCLSVIAICISGLVMWWQRRPAT--N 441
                 456666666667778899887543..3 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0041        10      18      56 ..      16      54 ..       4      78 .. 0.75
   2 ?   -0.2   0.2      0.46   1.2e+03      10      41 ..     184     209 ..     156     247 .. 0.54
   3 ?    2.9   0.9     0.049   1.3e+02      28      85 ..     392     487 ..     375     501 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0041
     DUF1772 18 passslllkqwrrlfkrgkavfpplallsalafaylaar 56
                ++ +++ l+ wr +f +g  v+p+l++l+ ++++++  +
  EGE23894.1 16 STAPQHYLRIWRWHFYAGLFVIPFLVILAGTGLGMIILS 54
                22233389********************99999966533 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.46
     DUF1772  10 vvPallslpassslllkqwrrlfkrgkavfpp 41 
                 v+ +l  +++++    ++wr++ +    v+++
  EGE23894.1 184 VIKMLTVQDTKT--KRNLWREIHA----VLGS 209
                 444555555444..3345555552....2222 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.049
     DUF1772  28 wrrlfkrg.kavfpplallsalafayla...................................araasrgarllylaaaal.llls.ivpyTllvm 85 
                 + +++++g +  ++++++ s+la +++                                       as+++  ++ + +++ ll+s ++p+ l+++
  EGE23894.1 392 FGKFMAVGiALHMGTAGIFSILANLLFClsviaicisglvmwwqrrpatnlhknnksalpmglLPPASQKNIPIWWGFGGVlLLISaLFPMGLFAI 487
                 566677788888888888888888844468888888888888889999999999999999888555566666666566666444443666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       901  (0.0502538); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 3948.81
//
Query:       EGE23895.1  [L=283]
Description: hypothetical protein EA1_07865 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-05   22.9   2.8    8.2e-05   22.3   1.6    2.0  2  HNH_3     HNH endonuclease
     0.0016   18.6   8.4     0.0016   18.6   8.4    2.4  3  HNH       HNH endonuclease


Domain annotation for each model (and alignments):
>> HNH_3  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.72   6.5e+03      12      23 ..      87      98 ..      86     101 .. 0.82
   2 !   22.3   1.6   9.1e-09   8.2e-05      20      42 ..     230     252 ..     224     255 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.72
       HNH_3 12 lGpiPeglvVdH 23
                +G +  g++V++
  EGE23895.1 87 NGDLNVGKKVHF 98
                788888999998 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 9.1e-09
       HNH_3  20 vVdHiDgdksnnrpeNLrlvTke 42 
                 +V+HiDg+k+nn   NL++++k 
  EGE23895.1 230 DVHHIDGVKQNNSQNNLMCLCKL 252
                 6******************9985 PP

>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.2   1.8e+03      15      29 ..      17      33 ..       9      35 .. 0.73
   2 ?   -5.2   1.6         2   1.8e+04       1       4 [.     143     146 ..     143     148 .. 0.50
   3 !   18.6   8.4   1.8e-07    0.0016       1      43 [.     215     256 ..     215     259 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.2
         HNH 15 evdHiipisq..ggadd 29
                 vdH ++ +    g++d
  EGE23895.1 17 MVDHLVEFKLqpRGPLD 33
                79***998854666666 PP

  == domain 2  score: -5.2 bits;  conditional E-value: 2
         HNH   1 CeyC 4  
                 C +C
  EGE23895.1 143 CHNC 146
                 4555 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 1.8e-07
         HNH   1 CeyCgrkfhks.ealevdHiipisqggaddieNlqllCksCHnk 43 
                 C++Cg +  ++     v+Hi+ ++q   ++ +Nl++lCk CH +
  EGE23895.1 215 CQVCGVNLSGYqHLADVHHIDGVKQ--NNSQNNLMCLCKLCHVN 256
                 **********988999********5..45679**********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2159.21
//
Query:       EGE23896.1  [L=204]
Description: hypothetical protein EA1_07870 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-08   32.7   0.1    1.2e-07   32.0   0.1    1.5  1  OmpA        OmpA family
  ------ inclusion threshold ------
      0.044   13.8   1.7        7.5    6.6   0.1    2.4  2  Holin_BhlA  BhlA holin family


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.1   1.4e-11   1.2e-07       1      69 [.      63     147 ..      63     180 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.4e-11
                 .B-TTS--B-GGGHHHHH....HHHHHHHS-S--...EEEEE---S......---HHH.....HHHHHHHHHHHHHHHHHH.TTSSGG CS
        OmpA   1 yFapgsseLtpkaksald....kiaellkkpeqk...itveGhtda......agseer.....nweLSqkRAeaVanylqn.egvpps 69 
                 +F++g+s+L++++k+ l+    ++++++ +++++   i++eGht++      +   +      n+ LSq+R ++V ++  +   v++ 
  EGE23896.1  63 LFKTGQSDLQDNYKEILSdffpRYIKVIDRYKDSineIRIEGHTSSewaagvD---ADiayfeNMRLSQDRTRTVLQFAYAiPEVSQY 147
                 5*****************9999888999933333567******9997774442...3355689************9987665666555 PP

>> Holin_BhlA  BhlA holin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1   0.00084       7.5      21      55 ..       7      41 ..       1      55 [. 0.80
   2 ?    6.3   0.2     0.001       9.2      40      69 ..      71     101 ..      65     102 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00084
  Holin_BhlA 21 vllvYilkkqekreekqeerekkyqeiikkltekf 55
                +++  il+  +  ee q+ +e+ y+++++++ + +
  EGE23896.1  7 IAISLILQVRQIAEEYQDTQEQIYKALLHEFADDL 41
                46777888888899*****************9976 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.001
  Holin_BhlA  40 rekkyqeiikkltekf.eiveeikkdvdeik 69 
                   ++y+ei++++  ++ +++++ k +++ei+
  EGE23896.1  71 LQDNYKEILSDFFPRYiKVIDRYKDSINEIR 101
                 579*********99995677*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       887  (0.0494729); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1565.90
//
Query:       EGE23897.1  [L=652]
Description: hypothetical protein EA1_07885 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-08   32.1  29.7    5.9e-07   29.1   3.2    4.0  3  DUF4407   Domain of unknown function (DUF4407)
  ------ inclusion threshold ------
      0.085   13.5   0.6      0.085   13.5   0.6    3.8  5  SlyX      SlyX
       0.32   11.4   3.1         13    6.3   0.0    3.7  3  YCII      YCII-related domain


Domain annotation for each model (and alignments):
>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1   0.00011      0.68      13      80 ..      25      94 ..      19      97 .. 0.65
   2 !   29.1   3.2   9.9e-11   5.9e-07      99     259 ..     146     290 ..     127     315 .. 0.70
   3 ?    0.8  14.0     0.042   2.5e+02     101     231 ..     364     529 ..     361     574 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00011
     DUF4407 13 yagiGavvlltallA.alsgayAlytvlk.splllallvGllwgllIfnlDRfivssikkrakkrrelal 80
                y  i +v++++a++A +++++   +t+++ +p+l+ +  G ++g + + +DR+ ++    ++k++r+l++
  EGE23897.1 25 YLTIISVLVFMAAFAeGFAWGHLGSTFTHdNPWLGRIGLGCFVGFALLFFDRQMITADFLEDKHKRQLLP 94
                4444445555444442444444445555415555******************999887566666666655 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 9.9e-11
     DUF4407  99 leLkiFekeIdaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqa 197
                 l++++F+ +I+++ +e+++++++++               ++ i +++ ei+a++++++ lr +++ e++g +gtg    +Gkgp+a++ ++++ + +a
  EGE23897.1 146 LTQILFKTDIEQKQFEQYEQSIESA--------------KNEIIGKIDDEIRAKKEKINSLRVKLDTEISGGRGTG----RGKGPIAQNLENEILEHKA 226
                 5555555555555555555554444..............455677**************************87777....8****************** PP

     DUF4407 198 elaelkakldatarlaalraelaeleaerakeraasq.aaaaaddGllarlealdrltkeda...t 259
                 el++l ++  ++++ ++ ++ + + ++++ +e   ++   + a+d  l r++a+++l k++a   +
  EGE23897.1 227 ELETLIKD--RNDKEKKIEDVIIGYNDKTLDEGVLTAlGIKVAKDSPLFRERAIEQLEKDSAyqkV 290
                 *****999..66666666666666665555554444414566888899999999999888775542 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.042
     DUF4407 101 LkiFekeIdaelaeeqqeeakelkeqlaaa..........................................................ltaelaeleaq 141
                 ++ +++ I +   +e+q++ ke ++ +a++                                                          l++el++++++
  EGE23897.1 364 MVRYNNNISEYESQERQKRDKEKSDHMAQQayflgrakeykdshaefhnraynqevtelalveidaqeqaylakygknyykwshekqaLSDELQAIDKE 462
                 566777777777777777777777777777777777777777777766666555553333333333333333333333444333333333333333333 PP

     DUF4407 142 iaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.........atarlaalraelaeleaerakera 231
                  ++                                  +G+ ++ +e+ a+l++ q++l+ lk k+           t++ ++ ++ +a  ++++++ ++
  EGE23897.1 463 YKSK--------------------------------QNGRQEYEEERLAKLEQVQRDLDILKVKVVgsehdytleGTKTYEHIQKSIAYHKQQIKALED 529
                 3333................................344444444444455555555554444444444444444222222222222222222222211 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.5   8.7e+03      25      43 ..     174     192 ..     157     201 .. 0.52
   2 ?   -3.6   0.2         3   1.8e+04      22      39 ..     217     234 ..     215     245 .. 0.56
   3 ?   -1.8   0.0      0.82   4.9e+03       3      15 ..     276     288 ..     273     290 .. 0.66
   4 ?   -2.4   0.1       1.3   7.8e+03      39      59 ..     448     468 ..     434     477 .. 0.57
   5 ?   13.5   0.6   1.4e-05     0.085       6      50 ..     511     555 ..     508     562 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHH CS
        SlyX  25 vvaeqqqqidrlqrqlrll 43 
                 ++ + +++i + +++++ l
  EGE23897.1 174 IIGKIDDEIRAKKEKINSL 192
                 3333333333333333333 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3
                 HHHHHHHHHHHHHHHHHH CS
        SlyX  22 Lndvvaeqqqqidrlqrq 39 
                 L +++ e+  +++ l + 
  EGE23897.1 217 LENEILEHKAELETLIKD 234
                 555666666666665544 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.82
                 HHHHHHHHHHHHH CS
        SlyX   3 erleeLEiklafq 15 
                   +e+LE   a+q
  EGE23897.1 276 RAIEQLEKDSAYQ 288
                 4577777777776 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.3
                 HHHHHHHT-XXXXXXXXXXXX CS
        SlyX  39 qlrllaerlkeleessgasea 59 
                 + ++l ++l++++++ +++++
  EGE23897.1 448 EKQALSDELQAIDKEYKSKQN 468
                 556666666555555443333 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
        SlyX   6 eeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkel 50 
                 e+++  +a++ ++i++L d+  e ++ + +l +q+ +l+++++ l
  EGE23897.1 511 EHIQKSIAYHKQQIKALEDAHLEYDENLVKLAKQMTYLTQEIEGL 555
                 5678899*********************************99876 PP

>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0022        13      15      51 ..     237     273 ..     222     281 .. 0.82
   2 ?    2.3   0.3     0.039   2.3e+02      13      33 ..     520     540 ..     509     551 .. 0.78
   3 ?    0.0   0.1       0.2   1.2e+03      13      39 ..     594     623 ..     571     644 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHHHHHHHHTTGEEEEEEEECSCSSSS CS
        YCII  15 eeraallaahlayleelkkeGvllaaGpklvidGpfa 51 
                 ++++++ +  + y+++  +eGvl a G k++ d+p  
  EGE23897.1 237 DKEKKIEDVIIGYNDKTLDEGVLTALGIKVAKDSPLF 273
                 57788888899**********************9975 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.039
                 GHHHHHHHHHHHHHHHHHHHH CS
        YCII  13 sleeraallaahlayleelkk 33 
                 + ++ +al +ahl+y+e l k
  EGE23897.1 520 HKQQIKALEDAHLEYDENLVK 540
                 3388999**********9987 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.2
                 GH...HHHHHHHHHHHHHHHHHHHTTGEEE CS
        YCII  13 sl...eeraallaahlayleelkkeGvlla 39 
                      ee+ a +a+hl+   +  ++G l a
  EGE23897.1 594 DDyntEEDLAYYAKHLQQEAKNSESGLLGA 623
                 223448999999999999999999998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1983  (0.110603); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 4210.53
//
Query:       EGE23898.1  [L=94]
Description: putative pterin-4-alpha-carbinolamine dehydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-20   72.7   0.1    2.2e-20   72.6   0.1    1.0  1  Pterin_4a  Pterin 4 alpha carbinolamine dehydratase


Domain annotation for each model (and alignments):
>> Pterin_4a  Pterin 4 alpha carbinolamine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.1   1.2e-24   2.2e-20       2      90 ..       3      90 ..       2      91 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 1.2e-24
   Pterin_4a  2 klseeeiqkllaelpgWrleeaeelerefkfkdfeeaiafvnrvaalaeeenHhpdilvsynkvtvrltThdaggltenDfklAakide 90
                 l++++++ +l++lpgW+l ++++l ++++fk+f++ai+f+ rva  ae  +H+p ++++ +++ vr+ T d + +  +D++lA+++++
  EGE23898.1  3 SLTADQVALQLDSLPGWSL-DGHSLVKTYHFKSFADAISFMVRVAFYAEILEHYPIWENNHTSILVRIGTADQHAVQSRDVQLAKRMQS 90
                58999******999****9.999***************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 699.32
//
Query:       EGE23899.1  [L=745]
Description: DNA topoisomerase IV subunit A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.8e-137  456.6   0.3   9.5e-137  456.4   0.3    1.1  1  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
    3.1e-07   29.8   0.1     0.0011   18.4   0.0    3.1  2  DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.4   0.3  1.1e-140  9.5e-137       1     425 [.      29     468 ..      29     469 .. 0.97

  Alignments for each domain:
  == domain 1  score: 456.4 bits;  conditional E-value: 1.1e-140
  DNA_topoisoIV   1 RaiPsvrDGlKPvqRriLyamfkl.lnldkkekKvaqlvGevlgkYhPHGdaslydaivrlaqdfvgniplldpqGnfGsildgdkd.AaaRYiet 94 
                    Ra+P++ DGlKPvqRri+yam++l l+++ k kK+a++vG+vlgkYhPHGd+++y+a+v +aq f++++pl+++qGn+Gs  d+ k+ Aa+RY+e+
     EGE23899.1  29 RALPHIADGLKPVQRRIVYAMSELgLKHTAKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSP-DDPKSfAAMRYTEA 123
                    9********************************************************************************.888889******** PP

  DNA_topoisoIV  95 rLskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeea...ellelvlgPdfptgg 187
                    ++s++a  ll ei++ tvd+q+n+Dgs  EP++lp+++Pn+L+nG++GIavGmat+ipphnl+e+++a+i+llk++e    +l+++ ++Pd pt +
     EGE23899.1 124 NMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLHEVVKACIRLLKNPELstkQLVQTLPAPDLPTTA 219
                    ****************************************************************************99999*************** PP

  DNA_topoisoIV 188 gii.gkeeikeayetgrGkikvrakveie..e.ktivitElPigvntskliekieelvkkkkik.isdirdesdr..gvrivielkr.gaseekvl 275
                    +ii  k+++  +yetg+G++k+ra+++++  + + ++i+ lP++v+ +k++e+i++l+ +kk+  +++irdesd+    rivielk+ + + +k++
     EGE23899.1 220 EIItPKNDMIAMYETGKGSYKMRATYHTDpkQnHLVIINALPYQVSGNKVVEQIAKLMMDKKLPwVTEIRDESDNlnPCRIVIELKKsKLNIDKIM 315
                    999889999******************999755889999*******************999***********999999*********9999***** PP

  DNA_topoisoIV 276 eklykktkLessisvnnlvlfdk.kpkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkidevievirkskkekkakkeLie 370
                    ++l+++t+Le+s++vn++++  + kp++++lk+il e+l+vr++v+ rr++y+l+k++erl+il gll+a+ +ide+i++ir+ ++    k eL++
     EGE23899.1 316 SHLFANTDLETSYRVNMNMIGINgKPEVKNLKSILLEWLSVRKSVVIRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAED---PKIELMT 408
                    ****************999987768**********************************************************955...8999999 PP

  DNA_topoisoIV 371 e..lseeqaeyllemrlrrLtkeeveklekeieelekeikelekllak...lkklikeel 425
                    +  l+++qa+++l+++lr+L+k+e+ +l++e+++le+e   +++ l++   l+kl+++el
     EGE23899.1 409 RfgLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLISEQLNNpemLTKLLIDEL 468
                    99**************************************99999999888788887776 PP

>> DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1   0.00026       2.3       2      38 ..     599     633 ..     598     652 .. 0.85
   2 !   18.4   0.0   1.2e-07    0.0011       8      46 ..     653     690 ..     653     692 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00026
                    EEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTT CS
  DNA_gyraseA_C   2 ellliTsnGyvkrfplselpeqgRgakGvkgiklkeg 38 
                    ++l+++s Gy++   l+ l    +   G+  i+l +g
     EGE23899.1 599 NVLMASSLGYGFINQLANLDTAQKS--GKSSINLADG 633
                    79*****************998877..9999988776 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.2e-07
                    TTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEE CS
  DNA_gyraseA_C   8 snGyvkrfplselpeqgRgakGvkgiklkegdklvsvlv 46 
                    snG+ + f  +elp + +g kG+k+ +lk g+ ++++  
     EGE23899.1 653 SNGNLLIFASDELPKLAKG-KGNKLANLKAGETITAITA 690
                    79***************99.**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5499.12
//
Query:       EGE23900.1  [L=268]
Description: 23S ribosomal RNA G745 methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-13   48.6   0.3    1.2e-11   45.1   0.3    2.4  1  Methyltransf_11  Methyltransferase domain
    1.4e-11   44.9   0.0    3.6e-11   43.6   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    5.1e-10   39.4   0.0    1.5e-09   37.8   0.0    1.7  1  Methyltransf_31  Methyltransferase domain
    1.3e-06   27.9   0.0    2.4e-06   27.1   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    3.8e-05   23.6   0.0    0.00019   21.3   0.0    2.0  1  Methyltransf_23  Methyltransferase domain
    7.4e-05   22.8   0.0    0.00013   21.9   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
    0.00015   21.5   0.0    0.00025   20.7   0.0    1.3  1  NodS             Nodulation protein S (NodS)
    0.00019   22.1   0.1    0.00067   20.4   0.1    2.0  1  Methyltransf_12  Methyltransferase domain
    0.00022   20.3   0.0    0.00069   18.6   0.0    1.7  2  Methyltransf_9   Protein of unknown function (DUF1698)
      0.001   18.6   0.1     0.0019   17.8   0.1    1.4  1  MTS              Methyltransferase small domain
      0.002   17.8   0.0      0.003   17.3   0.0    1.3  1  TPMT             Thiopurine S-methyltransferase (TPMT)
     0.0061   15.6   0.0     0.0093   15.0   0.0    1.2  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
     0.0062   16.5   0.6       0.02   14.9   0.1    2.0  2  Methyltransf_18  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.021   14.3   0.0    1.3  1  TehB             Tellurite resistance protein TehB
      0.019   14.8   0.0      0.031   14.0   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.036   13.8   0.3      0.074   12.9   0.3    1.5  1  PADR1            PADR1 (NUC008) domain
      0.048   12.7   0.0      0.072   12.1   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase
      0.049   14.2   0.1          4    8.1   0.1    2.4  2  RPA_interact_C   Replication protein A interacting C-terminal
      0.068   12.6   0.2        0.1   12.0   0.2    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.075   12.9   0.1       0.27   11.0   0.1    1.8  1  Methyltransf_8   Hypothetical methyltransferase
        0.1   12.7   0.0       0.23   11.5   0.0    1.6  2  FtsJ             FtsJ-like methyltransferase
       0.17   11.0   0.0       0.23   10.5   0.0    1.2  1  DREV             DREV methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.3   1.5e-14   1.2e-11       1      96 []      86     172 ..      86     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1.5e-14
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      Ld+GcG G++++al + + +v+g+D++k ++++a ++   ++  +++vva+ + lp++d+s+ +++s++    ++      +ei+RvL  gG+l
       EGE23900.1  86 LDIGCGEGYYTQALGSICDHVIGLDIAKSAIQTAAKADGSNQ--ITWVVATGSVLPVADKSMNVCTSFF--SPLP-----KDEIRRVLCDGGYL 170
                      8*********************************99999998..99****************9998875..4442.....37999999999999 PP

                      EE CS
  Methyltransf_11  95 vi 96 
                      ++
       EGE23900.1 171 MV 172
                      75 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   4.5e-14   3.6e-11       1      93 [.      85     164 ..      85     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 4.5e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      +Ld+GcG+G +t+al   +   +v+g+Di+++++++a++   ++  ++++v++  + lp +d+s+++++s+++   l++++       i+rvL
       EGE23900.1  85 ILDIGCGEGYYTQALGSIC--DHVIGLDIAKSAIQTAAKADGSN--QITWVVATGSVLPVADKSMNVCTSFFS--PLPKDE-------IRRVL 164
                      8***************998..9***************9988554..8***********************855..455444.......44444 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.9e-12   1.5e-09       5     134 ..      83     194 ..      81     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.9e-12
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                      +++lD+GCG+G++t +l   +++  +v+G+Di + ai+ A +     g++ ++  ++    l+  ++d++ ++ +s        +++    ei 
       EGE23900.1  83 KTILDIGCGEGYYTQALG-SICD--HVIGLDIAKSAIQTAAK---ADGSNQITWVVATGSVLP--VADKSMNVCTS-------FFSPLPKDEIR 161
                      689***************.7887..9**************99...589999999999999999..99******544.......68888899*** PP

  Methyltransf_31  99 rvlkpggilliedprllaelpakveeeskay..evveg 134
                      rvl++gg+l+++ +      p ++++++ a+  +vv +
       EGE23900.1 162 RVLCDGGYLMVAVAA-----PNHLYDMRAALfeTVVAH 194
                      **********99888.....777777766656544444 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.9e-09   2.4e-06      27     151 ..      61     172 ..      55     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.9e-09
                      HHTTTHHHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEE CS
  Ubie_methyltran  27 lslgihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvv 120
                      ls + ++  k+ + ++ ++ r++++lD+ +G g ++ +l +  +   +v++lDi ++ ++++   +k +g  +i +++a +  Lp  d+s++v 
       EGE23900.1  61 LSAEHYQPLKSEILNMIGNIRPKTILDIGCGEGYYTQALGSICD---HVIGLDIAKSAIQTA---AKADGSNQITWVVATGSVLPVADKSMNVC 148
                      666667777889999*********************99988765...69*******998776...6789***********************99 PP

                      EEES-GGG-S-HHHHHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 121 tvsfGlrnvtDklkaLkeayrvlkpGGrlvv 151
                      t  f     +  +k   e++rvl  GG l+v
       EGE23900.1 149 TSFF-----SPLPK--DEIRRVLCDGGYLMV 172
                      9655.....33333..467777777777766 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.3e-07   0.00019       8      62 ..      68     126 ..      56     212 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.3e-07
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.....k 62 
                       l+ +++ + + + +++ +LdiGcG+G+ ++ l     +v+g D+   a++ a+     +
       EGE23900.1  68 PLKSEILNMIG-NIRPKTILDIGCGEGYYTQALGSICDHVIGLDIAKSAIQTAAkadgsN 126
                      45556665665.99*****************99777669******999999876333330 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.7e-07   0.00013      24      71 ..      80     123 ..      64     147 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.7e-07
  Methyltransf_32  24 sgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekra 71 
                       +++t++D+G+G+gY +++l +       +v+g+d+ ++ +++a k +
       EGE23900.1  80 IRPKTILDIGCGEGYYTQALGS----ICDHVIGLDIAKSAIQTAAKAD 123
                      5789******************....5779***********9998876 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     3e-07   0.00025      43      96 ..      81     133 ..      57     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3e-07
        NodS  43 siadalevGcaaGalterlapyckrltvvdvveeaiararervkesshiswivs 96 
                 +   +l++Gc  G +t+ l  +c+++  +d+ ++ai+ a  + + s++i+w+v+
  EGE23900.1  81 RPKTILDIGCGEGYYTQALGSICDHVIGLDIAKSAIQTAA-KADGSNQITWVVA 133
                 44579*******************************8775.567789****986 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   8.2e-07   0.00067       1      51 [.      86     133 ..      86     170 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 8.2e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnv 51 
                      L+iGcG G +++al       +++g+Di +sai ++++k    ++  + + 
       EGE23900.1  86 LDIGCGEGYYTQALGSI--CDHVIGLDIAKSAI-QTAAKADGSNQITWVVA 133
                      8*************999..9*************.66666555555555555 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   8.5e-07   0.00069     107     148 ..      73     113 ..      63     135 .. 0.86
   2 ?   -1.3   0.0      0.98     8e+02     109     134 ..     150     175 ..     141     181 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 8.5e-07
                     HGGGS.--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---H CS
  Methyltransf_9 107 vlphlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPse 148
                     +l+ + +++ +tild+Gcg+Gy+  + +g   + v+G+d ++
      EGE23900.1  73 ILNMIGNIRPKTILDIGCGEGYYT-QALGSICDHVIGLDIAK 113
                     66778999***************8.578999999**999665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.98
                     GGS.--TT-EEEEET-TTSHHHHHHH CS
  Methyltransf_9 109 phlsdlkgrtildvGcgnGyhlwrmv 134
                       +s+l +  i  v c+ Gy +  ++
      EGE23900.1 150 SFFSPLPKDEIRRVLCDGGYLMVAVA 175
                     56799999999*********997665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   2.4e-06    0.0019      27      91 ..      77     139 ..      69     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.4e-06
                 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTT CS
         MTS  27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvle 91 
                 + + + +++lD+GcG G+ + al + +++  v  +d+ + A++ a +   +n++   v + +vl 
  EGE23900.1  77 IGNIRPKTILDIGCGEGYYTQALGSICDH--VIGLDIAKSAIQTAAKADGSNQITWVVATGSVLP 139
                 44556678*******************99..99**************999999987777766664 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.6e-06     0.003      44     108 ..      88     153 ..      63     194 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.6e-06
                 ET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTTSGGGGGEEEE--.............-TTT CS
        TPMT  44 PlCGkaldlvwlAeqgrevvGvelselAvekffeeanlepkvkelsgvke..ysageiellcgdvFt 108
                  +CG+++  ++l +  ++v+G++++++A++ +++  ++  +++ + ++      a++   +c+++F 
  EGE23900.1  88 IGCGEGYYTQALGSICDHVIGLDIAKSAIQTAAKADGS-NQITWVVATGSvlPVADKSMNVCTSFFS 153
                 59*****************************8666665.5554443333322233333334556664 PP

>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05    0.0093     203     250 ..      83     130 ..      71     135 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
  tRNA_U5-meth_tr 203 gdllelycGnGnfslalarnfekvlateiakssveaaqyniaankidn 250
                      + +l++ cG+G ++ al     +v+  +iaks++++a +   +n+i+ 
       EGE23900.1  83 KTILDIGCGEGYYTQALGSICDHVIGLDIAKSAIQTAAKADGSNQITW 130
                      57899********************************99999998875 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       7.3   5.9e+03      26      39 ..      32      45 ..      22      46 .. 0.83
   2 !   14.9   0.1   2.4e-05      0.02      15      58 ..      82     123 ..      70     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.3
  Methyltransf_18 26 gylpiylvkegkak 39
                     gy+ ++lv+++k k
       EGE23900.1 32 GYVNLHLVQHKKSK 45
                     89999999999876 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.4e-05
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeni 58 
                       ++++DiG+  gy + +l   +++++vi  Di+++++++a +  
       EGE23900.1  82 PKTILDIGCGEGYYTQALG--SICDHVIGLDIAKSAIQTAAKAD 123
                      469**********999987..8***************9998764 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.5e-05     0.021      15      70 ..      66     121 ..      53     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-05
                 -----HHHHHHCCCS-S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHH CS
        TehB  15 ltathsevveavkivkpgkvldlgcgqgrnslylsllgydvtawdknensiaflee 70 
                   + +se+++ +  ++p  +ld+gcg+g  +  l  +  +v  +d  +++i+   +
  EGE23900.1  66 YQPLKSEILNMIGNIRPKTILDIGCGEGYYTQALGSICDHVIGLDIAKSAIQTAAK 121
                 56789***********************9988888888888888888877776555 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.8e-05     0.031      45     115 ..      49     120 ..      35     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.8e-05
                 SS-EEEETT.EEE--HHHHHHHHHHTT....--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHH CS
        PCMT  45 daplsigyn.atiSaphmvalalelle....lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeak 115
                 d+p  +++  a  Sa h   l  e l+    + + + +L++G+G Gy t  l  +  ++   ++++  k+ +++a 
  EGE23900.1  49 DTPAAVQARrAFLSAEHYQPLKSEILNmignI-RPKTILDIGCGEGYYTQALGSICDHV---IGLDIAKSAIQTAA 120
                 56666666546788888888888888753322.3467************9999998764...47777776665554 PP

>> PADR1  PADR1 (NUC008) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   9.1e-05     0.074      15      34 ..       3      21 ..       1      28 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.1e-05
       PADR1 15 kCpeCkegqlvfdssgYkCt 34
                 Cp C+  +l f++++Y+C 
  EGE23900.1  3 ICPICH-LSLNFTKKTYQCA 21
                6*****.************7 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.9e-05     0.072      31      80 ..      82     130 ..      67     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.9e-05
                 TSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEE CS
      RrnaAD  31 kltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkv 80 
                  +t+l+ig G+G  T+ L  ++++v  l + ++ ++   k    ++++++
  EGE23900.1  82 PKTILDIGCGEGYYTQALGSICDHVIGLDIAKSAIQTAAK-ADGSNQITW 130
                 468*********************9988877766665555.344555555 PP

>> RPA_interact_C  Replication protein A interacting C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0049         4       1      30 [.       3      31 ..       3      57 .. 0.77
   2 ?    3.8   0.0       0.1        85      15      64 ..     161     213 ..     147     223 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0049
  RPA_interact_C  1 lCPvCkkrklketsevifCeCglrletsee 30
                    +CP+C+  +l+ t+++++C+ + ++++++ 
      EGE23900.1  3 ICPICHL-SLNFTKKTYQCANQHSFDVAKG 31
                    7****97.699********99988887633 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.1
  RPA_interact_C  15 evifCeCg.lrletseesltleelkrrlaetveeH..eegCsa.alefsveeke 64 
                     + + C+ g l +++  +  +l ++++ l etv +H  +++ +  a+ef+++++ 
      EGE23900.1 161 RRVLCDGGyLMVAV-AAPNHLYDMRAALFETVVAHhpNKSIQRlAPEFCLVDQA 213
                     56778877455555.778888899999988877775444556579999988775 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00013       0.1     162     210 ..      82     129 ..      71     148 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
        PrmA 162 geevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkve 210
                  +++lD+G+G G  + a   +  ++v+++Di + A++ a++    N+++
  EGE23900.1  82 PKTILDIGCGEGYYTQALGSI-CDHVIGLDIAKSAIQTAAKADGSNQIT 129
                 579*********998776665.589**************9999999886 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00033      0.27      72     158 ..      81     174 ..      64     211 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00033
                     TTS-EEEES-TT-HHHHH--S.-..EEEEESS-SS.TTEEES-T.TS..........-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEE CS
  Methyltransf_8  72 dnlvvadlGcGeakiaeavre.kekvrsfdlvavn.ervvacdl.ak..........vPledesvdvavfclslmgtnladflkeanrvlkvGGl 153
                       +++ d+GcGe   ++a +   ++v+ +d++    +     d  ++          +P++d+s++v   c s+ +     +  e++rvl  GG+
      EGE23900.1  81 RPKTILDIGCGEGYYTQALGSiCDHVIGLDIAKSAiQTAAKADGsNQitwvvatgsvLPVADKSMNV---CTSFFSP---LPKDEIRRVLCDGGY 169
                     456899*******999887662578999999754312223333323311100011114555555554...3333322...24579********** PP

                     EEEEE CS
  Methyltransf_8 154 lkvae 158
                     l+va 
      EGE23900.1 170 LMVAV 174
                     **995 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00028      0.23      21      66 ..      81     128 ..      16     194 .. 0.69
   2 ?   -1.5   0.0       2.9   2.3e+03     144     165 ..     179     201 ..     147     214 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00028
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS.....HHHTTEEEE CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.....aplpgvtti 66 
                 + kt++D+g++ G ++q l   +    +v+++D+ +      a+ +g ++i
  EGE23900.1  81 RPKTILDIGCGEGYYTQALGSIC---DHVIGLDIAKSaiqtaAKADGSNQI 128
                 3378***************9996...47******88756654222444444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
                 HHHHHH.CCEEEEEEEE-SS--C CS
        FtsJ 144 llkqlk.kfFekvsvvkPkssrs 165
                  l++++ ++Fe+v  + P+ s +
  EGE23900.1 179 HLYDMRaALFETVVAHHPNKSIQ 201
                 34444447788888888877655 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00028      0.23      82     134 ..      69     121 ..      57     187 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00028
        DREV  82 laiekespasdqedkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkk 134
                 l+ e  ++  + ++k++ld+G G+G  t+ + +  ++v   ++++  ++   k
  EGE23900.1  69 LKSEILNMIGNIRPKTILDIGCGEGYYTQALGSICDHVIGLDIAKSAIQTAAK 121
                 45555666778899***********************9998888776655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1937.09
//
Query:       EGE23901.1  [L=294]
Description: hypothetical protein EA1_07905 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-19   70.0  42.1    9.8e-12   45.2  17.9    2.1  2  EamA            EamA-like transporter family
  ------ inclusion threshold ------
      0.034   13.3   0.6      0.034   13.3   0.6    2.7  3  Nuc_sug_transp  Nucleotide-sugar transporter
       0.19   11.7   3.4          3    7.8   1.1    2.7  2  PDR_CDR         CDR ABC transporter
       0.48   10.5   6.7       0.27   11.3   1.0    2.7  2  TMEM234         Putative transmembrane family 234


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2  17.9   2.2e-15   9.8e-12       2     136 ..      18     150 ..      17     151 .. 0.89
   2 !   31.0  16.2   5.2e-11   2.3e-07       5     132 ..     163     288 ..     159     292 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 2.2e-15
        EamA   2 lgillallaalfwaiyfvlskillrkv..spltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslit 98 
                 +g l+++++a+ ++i+++l k++ +++  + ++l+f+r ++a+ +l + a+l+++++     + +    +   l++++  ++ff +l +++ ++a  ++
  EGE23901.1  18 IGSLWMVVGAIGFSIMGLLVKMTGTRFemHEYELVFWRVVFAATVLGLQAALTKKQF----STRYPQAHFWRSLAGTISLFMFFFGLVHLPLATAITFS 112
                 689********************998866888*************************....33344443334455667777889*************** PP

        EamA  99 slePvftlilsvlllgekltlkqllgivlillGvllil 136
                 +++ +f +i+sv+ll++ ++ +++++++l+l+G++lil
  EGE23901.1 113 HTSAIFLAIFSVILLKQFPSRLTWFALMLGLCGIMLIL 150
                 ************************************97 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 5.2e-11
        EamA   5 llallaalfwaiyfvlskil.lrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsleP 102
                 l+ l++  + +++++  + l l   ++++++f+  ++a+++  i + + ++++  + ++ + +l+ +gl++ ++++l ++ a k +    +s + +l++
  EGE23901.1 163 LIGLTSGAMAGYAYLQVRELsLLGEPSWRIVFYFAVLATLISAIASTVVGWTP--IQPQMLPYLFGIGLFA-MIGQLSMTHAYKVGRKFMVSALGYLVV 258
                 6778888888888888866658888999*************************..9999999999999766.699************************ PP

        EamA 103 vftlilsvlllgekltlkqllgivlillGv 132
                 v++++++v+++ e l ++ ++givl++++ 
  EGE23901.1 259 VLSMLYGVIFFDEVLPVMAMVGIVLVIASG 288
                 ***************************975 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.31   1.4e+03     241     263 ..      47      69 ..      23      76 .. 0.80
   2 ?   13.3   0.6   7.5e-06     0.034      93     153 ..      89     149 ..      83     156 .. 0.87
   3 ?    0.1   4.1     0.078   3.5e+02     279     313 ..     256     290 ..     232     292 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.31
  Nuc_sug_transp 241 kGydlvvwvvvllqavGGlvvav 263
                     + y+lv w vv+ ++v Gl  a+
      EGE23901.1  47 HEYELVFWRVVFAATVLGLQAAL 69 
                     56888999999999998888776 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 7.5e-06
  Nuc_sug_transp  93 YtvqnnllyvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalv 153
                      t+  ++ +++l +L+ at         +  a+fsv+lLk+  s+  W++l+l + G+ l+
      EGE23901.1  89 GTISLFMFFFGLVHLPLATAITFSHTSAIFLAIFSVILLKQFPSRLTWFALMLGLCGIMLI 149
                     567778999******9999777777788889***************************987 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.078
  Nuc_sug_transp 279 laiilstvasvllldlkitllFllGallviaavfl 313
                     l ++ls++  v+++d  + ++ ++G +lvia+ +l
      EGE23901.1 256 LVVVLSMLYGVIFFDEVLPVMAMVGIVLVIASGIL 290
                     6799**************************98665 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.1   0.00067         3      40      76 ..      77     114 ..      52     122 .. 0.84
   2 ?    3.4   0.1     0.016        71      50      81 ..     190     221 ..     166     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00067
     PDR_CDR  40 gyssshlwrnf.giliaflifflalyllatelisaeks 76 
                 +y ++h wr + g + +f++ff +++l +++ i+++  
  EGE23901.1  77 RYPQAHFWRSLaGTISLFMFFFGLVHLPLATAITFSHT 114
                 68999****86478889999999999999888887765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.016
     PDR_CDR  50 fgiliaflifflalyllatelisaekskgevl 81 
                 + i++ f+++ +++ ++a++++ ++  + ++l
  EGE23901.1 190 WRIVFYFAVLATLISAIASTVVGWTPIQPQML 221
                 459*****************999987766665 PP

>> TMEM234  Putative transmembrane family 234
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.0   5.9e-05      0.27      59     115 ..      94     149 ..      56     150 .. 0.82
   2 ?    1.6   0.5     0.061   2.7e+02      80     113 ..     256     289 ..     231     292 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.9e-05
     TMEM234  59 vlfflllgkadlslavpiaNslafvfTvltelllgekvlkkktvlgmllvvvgialc 115
                  +ff+ l + +l++a   +   + +f ++ + +l +++ ++ t+  ++l ++gi+l+
  EGE23901.1  94 FMFFFGLVHLPLATAITFSH-TSAIFLAIFSVILLKQFPSRLTWFALMLGLCGIMLI 149
                 36888888877776655544.4567889999************************97 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.061
     TMEM234  80 lafvfTvltelllgekvlkkktvlgmllvvvgia 113
                 l +v+ +l + +  ++vl   +++g++lv+++ +
  EGE23901.1 256 LVVVLSMLYGVIFFDEVLPVMAMVGIVLVIASGI 289
                 4456667777888888888888899999887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       902  (0.0503096); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2099.44
//
Query:       EGE23902.1  [L=528]
Description: peptide chain release factor 3 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-48  162.3   0.0    1.3e-47  161.9   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    7.3e-46  155.2   0.1    1.5e-45  154.2   0.1    1.5  1  RF3_C        Class II release factor RF3, C-terminal domain
    3.1e-09   37.1   0.0    5.6e-09   36.3   0.0    1.5  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    7.3e-05   22.8   0.1    0.00021   21.3   0.0    1.8  2  EFG_II       Elongation Factor G, domain II
    0.00011   22.3   0.0    0.00023   21.2   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   0.0   3.7e-51   1.3e-47       3     193 ..      12     276 ..      10     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 3.7e-51
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH....HHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEE CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgeka....eeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDga 97 
                  r+++ii+h D+GKtT+t++Ll   +ai+ +ge++    + +++ D+++ E+ergi+i+++++++   +k++ +nl+DtPGH+dFs++++r+l ++D a
  EGE23902.1  12 RRTFAIISHPDAGKTTMTEKLLLWGKAIQVAGEVRgrkaDRHATSDWMSMEQERGISITTSVMQFP--YKNHVVNLLDTPGHADFSEDTYRTLTAVDSA 108
                 699***************************99999776445778**********************..******************************* PP

                 EEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH........................................... CS
    GTP_EFTU  98 vlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk........................................... 153
                 ++v+d ++Gve++t +++++++ +++pii f+NK+Dr +++   + +e+++ l+ k                                           
  EGE23902.1 109 LMVIDGAKGVEERTIKLMEVCRMRDTPIISFVNKLDREIQNPLALLDEIESVLKIKcvpfaypigmgqdfvgvysfvdnktyfykkgfgsqiveieskd 207
                 *****************************************************888***********************************99999999 PP

                 .............................HHHHHHHHHTTT....TTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 154 .............................eeklekygekge....kevpvvfgSalkgegvktllealvellp 193
                                               e++++     e    +++pv+fg al ++gv+ +l++l++++p
  EGE23902.1 208 gydhadikdrlgqilwdefienielaqmaYEDWDER----EflagRQTPVLFGTALGNFGVNMILDVLTQYAP 276
                 999999999999999988888777766664444444....144448************************998 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   0.1   4.1e-49   1.5e-45       1     130 [.     386     513 ..     386     514 .. 0.97

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 4.1e-49
                 B---EEE--SEEEEEEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE-SSH.HHHH CS
       RF3_C   1 FegiPsFaPElfarvrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwvesedekkkle 99 
                 F+giP+FaPElf+rv lkdp+k+kql+kgl+qL+eEGa+qvf ++ ++++lilgaVG+LQfeVv++Rl +EY+v++++e++++ ++rwv s+d+  ++e
  EGE23902.1 386 FTGIPHFAPELFRRVVLKDPMKSKQLQKGLQQLSEEGATQVFMPQ-INNDLILGAVGVLQFEVVAHRLLEEYKVQCTFEPISIATVRWVYSDDKV-AFE 482
                 99******************************************9.9******************************************998885.69* PP

                 HHHHHCGGGEEEETTS-EEEEESSHHHHHHH CS
       RF3_C 100 elkkkseselvkdkkgrpvlLfenewelelv 130
                 ++kkk + +l  d  g +++L++++++l+l+
  EGE23902.1 483 KFKKKAHDQLSVDGGGYLTYLAPSRVNLQLM 513
                 ****************************987 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.6e-12   5.6e-09       2      73 ..     313     378 ..     312     379 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.6e-12
                  EEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   2 tvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  +va++rv sG+ ++G+++    ++ +k+   +r+s  ++f +  +e  ++a+aG+i+++ +  + i++Gd +
   EGE23902.1 313 RVAFMRVCSGKYERGMKMNH--VRLGKE---VRVSDALMFLAGDRETLDEAYAGDIIGLHNHGT-IQIGDSF 378
                  79******************..666689...*********************************.****965 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.4   1.2e+04       2      21 ..     276     295 ..     276     303 .. 0.78
   2 !   21.3   0.0   5.8e-08   0.00021       9      74 ..     399     463 ..     393     464 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.4
      EFG_II   2 PePvislaiepkskadedkl 21 
                 P+P  ++a+e + kade  +
  EGE23902.1 276 PPPKDHVAVERTVKADEPAF 295
                 67777899999999998776 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 5.8e-08
      EFG_II   9 aiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelg 74 
                  +  k+  ++++l+k L++l+eE  t +v + +  +++il ++G l++e+v+ rl +eykv+++++
  EGE23902.1 399 RVVLKDPMKSKQLQKGLQQLSEEGAT-QVFMPQINNDLILGAVGVLQFEVVAHRLLEEYKVQCTFE 463
                 5667888899*************999.88999999***************************9875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.5e-08   0.00023       2     114 .]      15     142 ..      14     142 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.5e-08
                 EEEEESTTSSHHHHHHHHH.................TSTEEESSST......TSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt.................gekaivsdkp......gtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleead 77 
                 +ai+ +p +GK+t+  +l+                 + +  +sd+       g  +++   ++ +k++ ++l+DtpG  +        +++++ l  +d
  EGE23902.1  15 FAIISHPDAGKTTMTEKLLlwgkaiqvagevrgrkaD-RHATSDWMsmeqerGISITTSVMQFPYKNHVVNLLDTPGHAD------FSEDTYRTLTAVD 106
                 589999************9776666666555433220.3333333311111144444444444466888********322......467778877789* PP

                 EEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  78 lillvvdaseeklkpldeeleelleeakkplilvlnk 114
                  +l+v+d + +++++   +l e+ + ++ p+i  +nk
  EGE23902.1 107 SALMVIDGA-KGVEERTIKLMEVCRMRDTPIISFVNK 142
                 *******55.668888888888877789999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.36
# Mc/sec: 4347.71
//
Query:       EGE23903.1  [L=102]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.085   11.9   0.1        0.1   11.7   0.1    1.1  1  EarP      Elongation-Factor P (EF-P) rhamnosyltransferase Ear
       0.14   12.2   0.0       0.17   11.9   0.0    1.1  1  DUF4973   Domain of unknown function (DUF4973)
        1.4    8.9   4.1          2    8.4   4.1    1.3  1  LPAM_2    Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> EarP  Elongation-Factor P (EF-P) rhamnosyltransferase EarP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.7e-05       0.1     290     319 ..      47      76 ..      45      99 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.7e-05
                 ----------HHHHHHHHTTTS-HHHHHHH CS
        EarP 290 pqeddaHlkKLeAfldlylaeleaeaaeal 319
                 +q+d +H+ KL+Af d+++ae +++ ++ l
  EGE23903.1  47 HQDDTVHVCKLKAFTDTFTAENQSRGKARL 76 
                 69****************888655544433 PP

>> DUF4973  Domain of unknown function (DUF4973)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.9e-05      0.17      38      89 ..      36      90 ..      31     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
                EEEE----------EEEEE...EE-HHHHHHHHHHHHTT-GGGSEEETTSTSEE- CS
     DUF4973 38 lPvivsGstknerdldvkv...avDaDtleilnleryaeredlyykeleekyysf 89
                +Pv++  st+n++d +v+v   +  +Dt+++ n+ r + r  +  k l++++  f
  EGE23903.1 36 VPVLIDKSTHNHQDDTVHVcklKAFTDTFTAENQSRGKARLAVKKKCLAANHEMF 90
                7****************98333456799999999999988877777777776665 PP

>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.1   0.00033         2       2      14 ..       5      17 ..       4      17 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00033
      LPAM_2  2 llllallllLaGC 14
                +l++a++l+L++C
  EGE23903.1  5 ALIIATALGLSAC 17
                79*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 892.56
//
Query:       EGE23904.1  [L=31]
Description: hypothetical protein EA1_07920 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        85  (0.00474092); expected 358.6 (0.02)
Passed bias filter:                       84  (0.00468515); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 275.76
//
Query:       EGE23905.1  [L=959]
Description: DNA polymerase I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.2e-145  482.8   0.1   1.1e-144  482.2   0.1    1.3  1  DNA_pol_A       DNA polymerase family A
    3.3e-52  176.6   0.0      7e-52  175.5   0.0    1.6  1  5_3_exonuc_N    5'-3' exonuclease, N-terminal resolvase-like 
    5.5e-38  130.4   0.3    1.9e-37  128.6   0.3    2.0  1  DNA_pol_A_exo1  3'-5' exonuclease
    2.8e-26   91.9   0.4    1.2e-25   89.9   0.4    2.2  1  5_3_exonuc      5'-3' exonuclease, C-terminal SAM fold
    0.00039   20.5   0.1     0.0013   18.8   0.1    1.9  1  HHH_2           Helix-hairpin-helix motif
  ------ inclusion threshold ------
        0.2   11.5   0.3       0.49   10.2   0.1    1.7  2  DUF992          Protein of unknown function (DUF992)


Domain annotation for each model (and alignments):
>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  482.2   0.1  3.5e-148  1.1e-144       4     375 ..     577     956 ..     574     957 .. 0.97

  Alignments for each domain:
  == domain 1  score: 482.2 bits;  conditional E-value: 3.5e-148
                 HHHHHHHHHHHHHHHHHHHHHHSSC.-STTTCCCCHHHHTCCCCS.TTSBETTS.BTTTCCHHHHHTS.CHHHHHHHHHHHHHHHHHTTTTGGGCCBTT CS
   DNA_pol_A   4 leelseeleeeleeleeeiyelage.fnlnSpkqlaevLfeklklpekkktktg.ystdeevLeklakhplaklileyrelsklkstyvdallklinkk 100
                 l +ls+e+++++ +l+ e++++a+e fnl+Spkql+e+Lf+kl++  +kktktg y t+e+vL+k+ +hpl++++le+r+lsklksty+d+l + ++ +
  EGE23905.1 577 LGQLSDEFDKKIMALQIEAERIADEpFNLASPKQLGEILFDKLGIAGGKKTKTGqYATSEAVLSKI-EHPLIDVVLEHRSLSKLKSTYTDTLANAAD-E 673
                 7799********************77****************************9***********.8***************************96.7 PP

                 TSEE--EEESSSSSSSS-EEESS-GGGS-TTSCCHHHHHHTBCG.TTCCEEEEEEETTHHHHHHHHHCT.HHHHHHHHTTH-HHHHHHHHHCTS.GGGH CS
   DNA_pol_A 101 tgrihtsfnqtvtatGrlsssepnlqnipirteegrriRkafvaeegghvllsaDysqiELRilAhlsgdeklieafkegeDiHsktAsevfgvpveev 199
                 +gr+hts++q+ t+tGrlsss+pnlqnipirt+ gr iR+af+a++g  ++l+aDysqiELR++Ah+sgde+li+af+++ DiH++tA+e++g++++ev
  EGE23905.1 674 QGRVHTSYHQALTSTGRLSSSDPNLQNIPIRTDTGRLIREAFIAPKG-RMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTATAAEIMGKDISEV 771
                 9********************************************95.67************************************************* PP

                 HHHHHHHHHHHHHHHHTT--HHHHHHHHTSSHHHHHHHHHHHHHHSHHHHHHHHHHHHHCCCECCEEETTCSEEEECTTT-CCHCCCHHHHHHHHHHHH CS
   DNA_pol_A 200 tkeqRrqaKainfGiiYGagakgLaeqlgiseeeAkefiekyferypgvksyleetleeakekgyvetllgrrrylpeiksknaalrekaeraavNapi 298
                 t+++Rr aKa+nfG++YG++a+gLa+q++++++ A+++i++yf+ryp + +y+e+t++ ak+ gyv+t+lgr+ y p+i+s+n++ + +aeraa+Nap+
  EGE23905.1 772 TPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHH...........SSS--EEEEEEESSCC CS
   DNA_pol_A 299 QGsAaDiiklamikieealkeeklkarlllqvHDElvfevpeeeveevaelvkeamesave...........ldvplkvevkvGknWg 375
                 QGsAa+iiklami+++e l +   +a+lllqvHDElvfev++++++ + +l+k+am++a++           + vpl ve+++G+nW+
  EGE23905.1 871 QGSAAEIIKLAMIAVDEVLPKD--DAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNALTdtakklgwavdFAVPLVVEIGIGENWE 956
                 *******************988..59*********************************88888888777778**************8 PP

>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   0.0   2.3e-55     7e-52       2     159 .]      33     194 ..      32     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 2.3e-55
  5_3_exonuc_N   2 llLiDgsslifRayyal..lttsdgeptnavygflnmllklleeekpthlavvfDakkktfRhelypeYKanReetpeelkeqlplikevlealgik 96 
                   ++L+Dgs ++fR +++l  l++s+g ptna++g+ln+l+kl+++++pth+av+fD+k++tfRh+l ++YKa+R++++e+l+ q+p+i+e++e+lgi+
    EGE23905.1  33 VILVDGSYYLFRCFHGLppLSNSQGLPTNAIRGVLNALNKLIKKYHPTHMAVAFDTKAPTFRHNLSETYKAHRPPMDEALRIQIPYIHEMIEKLGIA 129
                   79**************99*************************************9999************************************** PP

  5_3_exonuc_N  97 vlevegyEADDvigtlakraeeeg..vvivsgDkDllQlvednvrvld.vkkeelldeeevaekyg 159
                   +++++g+EADD+igtla +a ++g  v+i +gDkD++Qlv+d v + d   + +l d++ v+ek+g
    EGE23905.1 130 LIKIDGFEADDIIGTLAYQACQQGhrVIISTGDKDMAQLVNDCVMLEDsF-TGKLTDNAGVIEKFG 194
                   *******************6544336**************8666655542.2446899*****997 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.3   6.5e-41   1.9e-37       1     175 [.     352     541 ..     352     542 .. 0.95

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 6.5e-41
                     EEEEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTSSEEEEEEEEECSSEEEEEECTTTTTT-..........HGHHHHHHHT-TTSEEEESSH CS
  DNA_pol_A_exo1   1 yeivtdeeeleelieelknlkvvavDtEttsldlisatlvliliqlgekeeayiidplelgddv..........alealkrlledenitkvghna 85 
                     y+++t+++++++l+ +l+  +++a+DtEtt+++   a+lv+i+++  ++e++yi++ +    dv          +l+a+k++le++ni k+g+ +
      EGE23905.1 352 YHTITTQQDFTKLLDKLNHTPYFAIDTETTDINWQHAKLVGISVSTADYEGYYIPVGHTADFDVlldnqlpidtVLSAFKPILENPNIGKIGQHL 446
                     89********************************999*****************99998887788****************************** PP

                     HHHHHHHHHHHTS--SSE.EEHHHHHHHTTHSTT.SSHHHHHHHHHSB---GHCCTTSSTTT....SSS-HHHHHHHHHHHHHTHHHHHHHHHHH CS
  DNA_pol_A_exo1  86 kfDlevlardfgielenl.fdtmlaayvldyers.hsLdsLaekylgdleldkeeqiakwqk....arplleeqllYAaeDadvllrlfkkLtke 174
                     k+D +++++ +gi++++  +dtmla+yv++   + h++d La++ylg +++++e++++k++k    +++ ++ + +YA+eDad+++rlf+++++ 
      EGE23905.1 447 KYDAHIFKK-YGINISPWqMDTMLASYVINAAATrHGMDALAKHYLGVQTTTFEDVAGKGAKqlsfDKVAMDAASQYACEDADITFRLFNRFNQH 540
                     *********.999999973677*******999999************88999*********99999999999999***************99876 PP

                     H CS
  DNA_pol_A_exo1 175 l 175
                     +
      EGE23905.1 541 I 541
                     5 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.4   4.1e-29   1.2e-25       1      94 [.     195     287 ..     195     290 .. 0.96

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 4.1e-29
  5_3_exonuc   1 vkPeqiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelkekklkekLeenkeearlskkLatiktdvpleleledlklkep 94 
                 v+ eqi+d++aL+GD+sD i G+p++G+ktAakLl+ey+++++il+nl+++k+ ++ +++++n++++ l++ Lati+t+++l ++++d++l++ 
  EGE23905.1 195 VTSEQIADYLALMGDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKG-AVGKSIADNQDSIPLNRILATIVTNLKLAISFDDITLDHS 287
                 789***********************************************996.**********************************988765 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   4.4e-07    0.0013       7      31 ..     216     240 ..     214     256 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.4e-07
       HHH_2   7 GIrhVGektAklLakrFksldaLkk 31 
                 GI++VG+ktA +L ++++++d + +
  EGE23905.1 216 GIPKVGQKTAAKLLNEYQNIDGILA 240
                 9********************9854 PP

>> DUF992  Protein of unknown function (DUF992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.4     1e+04      94     142 ..     237     284 ..     225     284 .. 0.76
   2 ?   10.2   0.1   0.00016      0.49      50     108 ..     445     507 ..     438     514 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.4
      DUF992  94 GasasaavgvGlganvlvggssksiaLqplsvegqtGlnvaagvaeltL 142
                 G+ a++a   G+ ++  +++++ si L+ +  +  t l +a++  ++tL
  EGE23905.1 237 GILANLANIKGAVGKS-IADNQDSIPLNRILATIVTNLKLAISFDDITL 284
                 5666666666666665.56789999999999999999999998888877 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00016
      DUF992  50 eekYtgti.rklGldlgiteeskl..awaVlaptaklkegaLaGeYvGasas.aavgvGlgan 108
                 + kY ++i +k+G+++   ++ ++  ++ + a+ ++ + +aLa +Y G+++  +  ++G ga+
  EGE23905.1 445 HLKYDAHIfKKYGINISPWQMDTMlaSYVINAAATRHGMDALAKHYLGVQTTtFEDVAGKGAK 507
                 56899998459*****98887776334777788888899**********87514556676666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (959 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 6650.98
//
Query:       EGE23906.1  [L=875]
Description: DNA topoisomerase I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.4e-125  417.9   0.0   6.2e-125  417.4   0.0    1.2  1  Topoisom_bac    DNA topoisomerase
    3.7e-32  110.6   0.3    1.7e-31  108.5   0.1    2.2  2  Toprim          Toprim domain
    4.4e-31  106.3   0.1    2.4e-16   59.1   0.2    2.6  2  Topo_Zn_Ribbon  Topoisomerase I zinc-ribbon-like
    1.1e-12   47.5  18.1    1.1e-05   25.1   2.2    4.9  4  zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
     0.0023   18.3   0.2      0.095   13.2   0.0    3.0  3  Toprim_4        Toprim domain
  ------ inclusion threshold ------
       0.15   12.5   0.0       0.62   10.5   0.0    2.1  1  Toprim_2        Toprim-like
        0.3   10.5   8.9      0.042   13.2   0.6    3.1  3  zf-TFIIB        Transcription factor zinc-finger
       0.42   10.5   8.3      0.055   13.3   1.9    2.4  2  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
        1.6    8.8   5.4        2.6    8.1   0.8    2.8  2  HypA            Hydrogenase/urease nickel incorporation, meta
        8.8    6.8   7.7         15    6.0   3.7    2.6  2  DnaJ_CXXCXGXG   DnaJ central domain


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.4   0.0  3.5e-128  6.2e-125       2     413 .]     174     579 ..     173     579 .. 0.94

  Alignments for each domain:
  == domain 1  score: 417.4 bits;  conditional E-value: 3.5e-128
  Topoisom_bac   2 inenlvdaaeaRrelDwliGinlsrlltkklkgkkvlsaGRVqtptLaliveRereienFvpeeyweveatlkkekkeke...kkkkkkkerikdke 95 
                   +n + v+a++aRr lD+++G+ +s+ll+ k+   + lsaGRVq+++ +l+veRerei++Fvp eyw+++ + + ++++ +    kk+ k  ++ +k 
    EGE23906.1 174 LNIDRVNAQQARRFLDRVVGFMVSPLLWAKIA--RGLSAGRVQSVATRLVVEREREIRAFVPVEYWKIHTNNTAAGETLNleaVKKNGKTLKLGNKA 268
                   68899***********************9999..9**********************************8854444444477777888888999*** PP

  Topoisom_bac  96 eaeaileklkkkeakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlseeaelkailealakkygkey 192
                   +a++++ +l ++++ v+++e+k ++++p  pf t+tLq++as++lg+s kkt+ +aq+LYe  g+itY+RTdst ls++a l+ ++e++++++g++y
    EGE23906.1 269 QADEVVLALGSSDFIVSAIEEKPTQSRPSAPFITSTLQQAASTRLGFSVKKTMILAQRLYEA-GHITYMRTDSTFLSQDA-LNLVREYITDHFGDDY 363
                   *********6669*************9999*******************************5.*****************.9*************** PP

  Topoisom_bac 193 lefaekllkktkkksvvknkkveaHeAIrPteelpklkels...ddekklYelIvrrflaslmkdakyeettvkleveeeefkasgktilekGfkkv 286
                   l+ +++ +  +k     +n++ eaHeAIrP   l k+++l+   +d ++lYelI+r+f+a++m +a+y+++++ + +++ e+ka+g+t++++G++kv
    EGE23906.1 364 LPQKPNFYG-NK-----QNAQ-EAHEAIRPSHVLVKSSQLTgmeRDAQRLYELIWRQFVACQMMPARYQSVNLMVAAGDIELKAKGRTLVFDGYTKV 453
                   **7777665.33.....4788.*********888777777777778888************************************************ PP

  Topoisom_bac 287 ykeekkeeeeeelpelkegeevkvkeveleekkTkppkryteasLikamekagiGtpaTraeiieklvergYverkkkslvptelGkalvell.ekf 382
                   ++ +k+++    lp++k+ge++++ e+  ++++T+pp+ry+easL+k++e+ giG+p+T+a+ii++++ergYv+ ++k+l++ ++G  ++e l e f
    EGE23906.1 454 QPPAKTDDIL--LPAVKVGEKLPLIEILPTQHFTSPPARYSEASLVKELESLGIGRPSTYASIISTIQERGYVKLENKRLYAEKMGDIVTERLvESF 548
                   **99999986..***************************************************************99****************9999 PP

  Topoisom_bac 383 kdlvspelTaeleekLdeIaegkadakevld 413
                   +dl+++ +Ta le+kLde+a g++d+k+vld
    EGE23906.1 549 PDLMDYAFTAGLEDKLDEVAVGEEDWKAVLD 579
                   ****************************986 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.1   9.3e-35   1.7e-31       2     103 .]      25     159 ..      24     159 .. 0.98
   2 ?   -1.9   0.0       2.3   4.1e+03      45      69 ..     251     276 ..     214     279 .. 0.66

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 9.3e-35
                 EEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS...................................TTEEEEEECTTTHHHHHHHHHHHHHHSE CS
      Toprim   2 lvivEgpsdaktiakalgsgfqavtaslGhildlet...................................efkpvyeeiedkkkvlkalkelakrade 65 
                 lvivE+p++akti+k+lg ++++v +s+Gh++dl+                                    ++ +vye++++k+kv+ +lk lak+ad+
  EGE23906.1  25 LVIVESPAKAKTINKYLG-KDYVVRSSVGHVRDLPVggsatktnktqdvglsreekaqkalvrrmgvdpehDWAAVYEILPNKTKVIRELKALAKEADK 122
                 9*****************.******************************************************************************** PP

                 EEEECSSSHHHHHHHHHHHHHHTHHHTTTEEEEEESSS CS
      Toprim  66 iilatDpDreGeaiawellevlkellenkigrvefsei 103
                 i+latD DreGeaiaw+l ev++ + ++k++rv+f+ei
  EGE23906.1 123 IYLATDLDREGEAIAWHLKEVIG-GSDDKYSRVVFNEI 159
                 ***********************.66667*******98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.3
                 ECTTTHHHHHHHHHHH.HHHSEEEEE CS
      Toprim  45 eiedkkkvlkalkela.kradeiila 69 
                 ++e  kk+ k+lk     +ade++la
  EGE23906.1 251 NLEAVKKNGKTLKLGNkAQADEVVLA 276
                 44555555555665555777777777 PP

>> Topo_Zn_Ribbon  Topoisomerase I zinc-ribbon-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   4.5e-15   8.1e-12       2      41 .]     770     805 ..     769     805 .. 0.97
   2 !   59.1   0.2   1.3e-19   2.4e-16       1      39 [.     836     874 ..     836     875 .] 0.97

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 4.5e-15
  Topo_Zn_Ribbon   2 npalvRFSrKtkeqYVlsEkdGKaTgWlAayidgKwretr 41 
                     +p+l+  S+K +++YVl+  +G+a+++lAa++++K+retr
      EGE23906.1 770 MPKLR--SQKFDDHYVLR--EGAAGLFLAASKFPKVRETR 805
                     899**..***********..******************97 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 1.3e-19
  Topo_Zn_Ribbon   1 gnpalvRFSrKtkeqYVlsEkdGKaTgWlAayidgKwre 39 
                     gnp+++R+SrK++eqYV sEkdGKaT +  +++dg w++
      EGE23906.1 836 GNPTILRWSRKNQEQYVGSEKDGKATRFALVWRDGAWVQ 874
                     8************************************95 PP

>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.6   7.9e-08   0.00014       2      27 ..     609     634 ..     608     649 .. 0.90
   2 ?    1.0   3.5      0.21   3.7e+02       3      31 ..     673     702 ..     671     708 .. 0.75
   3 !   25.1   2.2     6e-09   1.1e-05       3      38 ..     724     756 ..     722     757 .. 0.93
   4 !    5.3   0.0    0.0093        17      12      37 ..     783     808 ..     779     810 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.9e-08
                     EE-SSS--EEEEEE-SSSEEEEESST CS
  zf-C4_Topoisom   2 ekCPkCggdLvlkrgkkGkFvGCsnY 27 
                     + C+ C  ++++++g  G F+GC+ Y
      EGE23906.1 609 IHCDLCHRPMQIRTGSTGVFLGCTGY 634
                     57**********************99 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.21
                     E-SSS--EEEEEE-SSS.EEEEESST.T-- CS
  zf-C4_Topoisom   3 kCPkCggdLvlkrgkkG.kFvGCsnYPeCk 31 
                      CPkC+  +       G k + C n P+C+
      EGE23906.1 673 RCPKCNTAMDGYIVDGGlKLHICGNNPDCD 702
                     7*****988766666667777777777776 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 6e-09
                     E-SSS--EEEEEE-SSSEEEEESST.T----EEB-G CS
  zf-C4_Topoisom   3 kCPkCggdLvlkrgkkGkFvGCsnYPeCkftkklkk 38 
                     +C+kC g++ lk+g++G + +C     C++t+k  k
      EGE23906.1 724 DCDKCDGQMELKTGRFGAYFACRK---CDNTRKVLK 756
                     8**********************8...*****9876 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0093
                     EEEE-SSSEEEEESST.T----EEB- CS
  zf-C4_Topoisom  12 vlkrgkkGkFvGCsnYPeCkftkklk 37 
                     vl++g  G F++ s +P+ + t++ k
      EGE23906.1 783 VLREGAAGLFLAASKFPKVRETRPPK 808
                     99***************988888765 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0        10   1.8e+04       3      19 ..      25      42 ..      24      49 .. 0.75
   2 !   13.2   0.0   5.3e-05     0.095      36      78 ..     101     144 ..      93     155 .. 0.77
   3 ?    1.5   0.0      0.23   4.1e+02      59      77 ..     239     260 ..     216     280 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 10
    Toprim_4  3 iiiVEgyaDvlaleka.g 19
                ++iVE++a +  + k+ g
  EGE23906.1 25 LVIVESPAKAKTINKYlG 42
                799999998777777655 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 5.3e-05
    Toprim_4  36 girpeklkt.enlveaekkvkevilaldgDaeGeataerlaell 78 
                 +i p k k  ++l++  k++++++la+d D eGea a +l+e +
  EGE23906.1 101 EILPNKTKViRELKALAKEADKIYLATDLDREGEAIAWHLKEVI 144
                 56666666666677777888*****************9999844 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.23
    Toprim_4  59 laldgDaeGeataerlae...l 77 
                 + ++++a+Ge+  +++++   +
  EGE23906.1 239 IHTNNTAAGETLNLEAVKkngK 260
                 5678888999988888884331 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00035      0.62      34      68 ..     111     144 ..      75     162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00035
    Toprim_2  34 aalkllerypekkvvlalDnDkaGrkaakrlaell 68 
                 + lk l+++ ++k++la+D D+ G++ a  l+e++
  EGE23906.1 111 RELKALAKE-ADKIYLATDLDREGEAIAWHLKEVI 144
                 345555555.567**************99999876 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.73   1.3e+03      11      24 ..     603     616 ..     597     616 .. 0.82
   2 ?   13.2   0.6   2.3e-05     0.042       2      31 ..     674     707 ..     673     713 .. 0.82
   3 ?    0.7   0.5      0.18   3.3e+02      22      28 ..     725     731 ..     716     751 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.73
    zf-TFIIB  11 eserggveidyCpq 24 
                 ++++ ++++d C++
  EGE23906.1 603 PTNVPDIHCDLCHR 616
                 6778899*****86 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.3e-05
    zf-TFIIB   2 CPkCqdeleeser.ggveidyC...pqCrGvWld 31 
                 CPkC++++  + + gg++++ C   p+C G+ l+
  EGE23906.1 674 CPKCNTAMDGYIVdGGLKLHICgnnPDCDGHVLE 707
                 *************666******555589887665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.18
    zf-TFIIB  22 CpqCrGv 28 
                 C++C G 
  EGE23906.1 725 CDKCDGQ 731
                 4444442 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.5      0.53   9.4e+02       4       8 ..     674     678 ..     673     681 .. 0.87
   2 ?   13.3   1.9   3.1e-05     0.055       4      28 ..     725     749 ..     724     751 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.53
                     ESTTT CS
  RNA_POL_M_15KD   4 CpkCg 8  
                     CpkC+
      EGE23906.1 674 CPKCN 678
                     ****9 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.1e-05
                     ESTTTSBEEEEECSCCCEEEESSSS CS
  RNA_POL_M_15KD   4 CpkCgNlLlpkedkegknfeCrqCg 28 
                     C kC   ++ k+++ g +f+Cr+C+
      EGE23906.1 725 CDKCDGQMELKTGRFGAYFACRKCD 749
                     9***********************7 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.4      0.16   2.8e+02      87      96 ..     663     682 ..     607     696 .. 0.69
   2 ?    8.1   0.8    0.0014       2.6      65     103 ..     717     759 ..     692     761 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.16
                 H.........S-TTTSSS.- CS
        HypA  87 l.........rCpkCgsa.d 96 
                 +         rCpkC++a d
  EGE23906.1 663 AevnalmekkRCPKCNTAmD 682
                 04444444459999998644 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0014
                 EEE--EEEETTTS-EEECHH.H...HHS-TTTSSS-EEEEESS CS
        HypA  65 eevpvkvrCreCgkefelee.k...alrCpkCgsadveivsGe 103
                 ++   ++ C++C+ ++el++ +    + C kC++++  +++G+
  EGE23906.1 717 TSDTPTIDCDKCDGQMELKTgRfgaYFACRKCDNTRKVLKNGQ 759
                 56678899*********8886345456******9988887776 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.19   3.5e+02      56      64 ..     670     678 ..     631     687 .. 0.66
   2 ?    6.0   3.7    0.0086        15      10      55 ..     717     756 ..     695     761 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.19
  DnaJ_CXXCXGXG  56 ekdkCkkCk 64 
                    ek++C+kC+
     EGE23906.1 670 EKKRCPKCN 678
                    333444443 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0086
  DnaJ_CXXCXGXG  10 kkgk.kktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGkvik 55 
                    ++++ + +C++C+G+ + ++ +  +g ++      C++C+ t kv+k
     EGE23906.1 717 TSDTpTIDCDKCDGQMELKTGR--FGAYF-----ACRKCDNTRKVLK 756
                    3333355799999988544444..66543.....6888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 5707.92
//
Query:       EGE23907.1  [L=198]
Description: hypothetical protein EA1_07935 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1459.09
//
Query:       EGE23908.1  [L=866]
Description: DNA translocase FtsK [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-63  212.9   0.0    8.7e-63  211.9   0.0    1.5  1  FtsK_SpoIIIE    FtsK/SpoIIIE family
    3.6e-30  104.1   0.4    9.9e-30  102.7   0.4    1.8  1  FtsK_alpha      FtsK alpha domain
      4e-25   88.5  26.2      4e-25   88.5  26.2    1.7  2  FtsK_4TM        4TM region of DNA translocase FtsK/SpoIIIE
    5.3e-25   87.0   0.1      1e-24   86.0   0.1    1.5  1  FtsK_gamma      Ftsk gamma domain
    0.00018   20.5   0.0    0.00031   19.7   0.0    1.3  1  RHSP            Retrotransposon hot spot protein
    0.00026   21.2   0.1    0.00026   21.2   0.1    2.0  2  DUF87           Helicase HerA, central domain
     0.0006   18.8   0.0     0.0011   18.0   0.0    1.4  1  AAA_10          AAA-like domain
     0.0019   17.3   0.0     0.0036   16.4   0.0    1.5  1  T2SSE           Type II/IV secretion system protein
     0.0083   15.3   0.0      0.016   14.4   0.0    1.3  1  DUF815          Protein of unknown function (DUF815)
  ------ inclusion threshold ------
       0.04   13.4   0.0      0.078   12.5   0.0    1.4  1  AAA_7           P-loop containing dynein motor region
      0.065   13.0   0.1       0.16   11.7   0.1    1.7  1  AAA_29          P-loop containing region of AAA domain
      0.079   13.2   0.0       0.48   10.7   0.0    2.2  1  AAA_22          AAA domain
      0.085   13.2   0.0       0.22   11.9   0.0    1.8  1  AAA_16          AAA ATPase domain
      0.086   12.2   0.0          1    8.7   0.0    2.4  2  TniB            Bacterial TniB protein
       0.12   11.7   0.0       0.24   10.7   0.0    1.4  1  ATPase          KaiC


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.9   0.0   7.2e-66   8.7e-63       2     242 ..     489     702 ..     488     703 .. 0.97

  Alignments for each domain:
  == domain 1  score: 211.9 bits;  conditional E-value: 7.2e-66
                   HHHHHTSHHHHT---TTEEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS.S- CS
  FtsK_SpoIIIE   2 LlevleskkfrtessqlpvalgkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsvav 98 
                   Lle+l++k ++    q+ +a+gk+isg+p+++dl+k++ h+lvaG+tgsGKS+ +n+++lS+++++tP+e++l+liD+k +el+ + diphll+ +v
    EGE23908.1 489 LLELLDTKDYQSPNNQIAIAVGKDISGKPVIADLAKAP-HMLVAGTTGSGKSVLVNSFLLSMLLKYTPDELKLVLIDPKQLELANYGDIPHLLT-PV 583
                   88999*********************************.*******************************************************.** PP

                   B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTT---B-TT-......................-----------B-----EEE CS
  FtsK_SpoIIIE  99 atdperalraleeLvkemeeryalfreagvrsiaaydgeiaedpldifgdvflvlDnyddlaaeneritsLsnqgpsygvhvlvtagrelekrpslv 195
                   +td+++a++al ++v+eme+ry+l+++ +vr+i+ ++++++ +++++++++++++                        + v   ++++l+++p++v
    EGE23908.1 584 ITDMKDAVAALTWCVNEMERRYQLMSKLRVRKISEFNKKVEVAEAEGEPIYDPLW---------------------HINQSVSQDKPPKLKPLPTIV 659
                   ******************************************************9.....................5556777889*********** PP

                   EEEC-HHHHHHHHHHH....HHHHHHHHHHHCGGGTEEEEEEES--- CS
  FtsK_SpoIIIE 196 vivderieLrlaapkdssvlvedaivRlarkgraaglHlllatqrls 242
                    + de+++++++ +k     +e++ivRla+k+raag+Hlllatqr+ 
    EGE23908.1 660 IVADEFADMIMQLGKT----AEEPIVRLAQKARAAGIHLLLATQRPT 702
                   ****************....*************************96 PP

>> FtsK_alpha  FtsK alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.4   8.2e-33   9.9e-30       1     101 []     380     481 ..     380     481 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 8.2e-33
  FtsK_alpha   1 LPsldlLeeeekek.kkedeeelekkaklieetleefgieakvveisvGPvvtqyevepapgvkvskiaaleddlalaLaaksirieapipGksvvGie 98 
                 +P+ldlL++++ ++  k++++el++ ++l+e +l+ef+i+a+vv++ vGPvvt++eve+apgvk+s+++++++dla++++ +s+r++++ipGk ++Gie
  EGE23908.1 380 IPELDLLDKPNLSNkPKVSDDELQQASELLEIKLQEFNIQAQVVSAMVGPVVTRFEVELAPGVKASRVTRISQDLARSMSKASLRVVEVIPGKPYIGIE 478
                 69*******9987647899******************************************************************************** PP

  FtsK_alpha  99 vPn 101
                 vPn
  EGE23908.1 479 VPN 481
                 **9 PP

>> FtsK_4TM  4TM region of DNA translocase FtsK/SpoIIIE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5  26.2   3.3e-28     4e-25       6     166 ..      23     182 ..      19     191 .. 0.94
   2 ?   -2.9   0.1       3.9   4.7e+03      14      30 ..     541     557 ..     539     565 .. 0.86

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 3.3e-28
    FtsK_4TM   6 EllgllllllalflllaLlsYspdDpswstsgsaaaavhNwgGrvGAwladlllslfGlsawllvvlllawglrllrrkslerrllrllgalllllasa 104
                  ++ +++++l++fl+l+LlsY+++D +ws++gs++ +++N gG++GAw++d+l  lfG++aw+ v++l++  +rl+ ++    ++lrl++  ll+l ++
  EGE23908.1  23 LIFSIFGIVLLVFLFLSLLSYDQTDSAWSHVGSHS-TINNVGGLLGAWVSDILHTLFGFGAWVAVLVLAYELVRLWWSHVKLFWVLRLFAYGLLILFVS 120
                 57899***************************986.****************************************99988889*************** PP

    FtsK_4TM 105 alfalrlasledelpggaGGvlGrllaaalstllgftGatllllvllliglslvlgfswlel 166
                 al a+  + +++ l+ ++GG++G  l++ l+ ++g t ++lll+ ++++  +l +++ w  l
  EGE23908.1 121 ALLAYIGEMTNALLATRLGGAIGFELQKSLAGIFGGTVTALLLIGIIILISLLSFEIRWRYL 182
                 ****************************************9999999999999999999655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.9
    FtsK_4TM  14 llalflllaLlsYspdD 30 
                 l+  fll +Ll Y+pd+
  EGE23908.1 541 LVNSFLLSMLLKYTPDE 557
                 67789********9985 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.1   8.8e-28     1e-24       3      61 ..     807     865 ..     806     866 .] 0.97

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 8.8e-28
  FtsK_gamma   3 eDelfeeavelvveegkaStSllQRrlriGYnRAarlidqLeeeGiVgpaegskpReVl 61 
                  Del+e a+++vve++k S+S++QR+++iGYnRAarl+dq+ee+G+V+++++s++R+ l
  EGE23908.1 807 GDELYEAAAAFVVETKKPSISSVQRKFSIGYNRAARLLDQMEERGLVSSMDNSGKRQLL 865
                 59*******************************************************98 PP

>> RHSP  Retrotransposon hot spot protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.6e-07   0.00031     124     160 ..     524     561 ..     513     566 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.6e-07
        RHSP 124 ripnvlv.GtpGiGkslavGsfllykllhydaellrii 160
                 ++p++lv Gt+G Gks+ v sfll  ll y  + l+++
  EGE23908.1 524 KAPHMLVaGTTGSGKSVLVNSFLLSMLLKYTPDELKLV 561
                 67885544*************************99988 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.6       1.8   2.2e+03     114     164 ..     258     307 ..     237     349 .. 0.54
   2 !   21.2   0.1   2.2e-07   0.00026      13      60 ..     517     565 ..     507     579 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.8
       DUF87 114 aavqrsvleealdqakakeekeklssdepveklleelk..keke.elrklknqa 164
                 +a ++++ +ea + +   +e +++ + +p+++ +++l   + ++ el++++nq+
  EGE23908.1 258 EASKQAAKAEAENIY---QETQQAATTDPMKYRHDKLDdaT-HLgELNESSNQI 307
                 333333344443333...45556666666777777777431.222333333333 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.2e-07
       DUF87  13 pvyldlnklvtrHlAilgsTGsGKSntvavLleelle...kkgatililDp 60 
                 pv  dl k+   H+++ g+TGsGKS +v + l ++l     + ++++++Dp
  EGE23908.1 517 PVIADLAKA--PHMLVAGTTGSGKSVLVNSFLLSMLLkytPDELKLVLIDP 565
                 677777777..9****************99887777668767779999998 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     9e-07    0.0011      19      60 ..     523     568 ..     511     596 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9e-07
      AAA_10  19 tnasasliiGdlGnGKSvlakllvlyisllg....gkaliiDpkke 60 
                  +a+++l+ G +G GKSvl++   l ++l       k+++iDpk+ 
  EGE23908.1 523 AKAPHMLVAGTTGSGKSVLVNSFLLSMLLKYtpdeLKLVLIDPKQL 568
                 579******************988888776577779********85 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     3e-06    0.0036     127     155 ..     523     552 ..     390     593 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3e-06
       T2SSE 127 rerglilvsGgTgsGKttllyallk.eink 155
                 ++   +lv+G+TgsGK++l+++ l  ++ k
  EGE23908.1 523 AKAPHMLVAGTTGSGKSVLVNSFLLsMLLK 552
                 445689**************9865403333 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-05     0.016      51      93 ..     523     569 ..     515     587 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.3e-05
      DUF815  51 lpannvLLwGarGtGKSslvka....llneyaeegLrlievekedlk 93 
                 ++a ++L+ G+ G+GKS lv +    +l +y+ ++L+l+ ++ ++l+
  EGE23908.1 523 AKAPHMLVAGTTGSGKSVLVNSfllsMLLKYTPDELKLVLIDPKQLE 569
                 5899****************972111445667777999999998875 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.6e-05     0.078      32      58 ..     524     550 ..     498     561 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.6e-05
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkld 58 
                 +  ++l+ G+tG+GK+v+++++l ++ 
  EGE23908.1 524 KAPHMLVAGTTGSGKSVLVNSFLLSML 550
                 45689****************655543 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00014      0.16      24      41 ..     527     544 ..     504     552 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
      AAA_29  24 atlltGpsGsGKSTllDA 41 
                  +l++G++GsGKS l+ +
  EGE23908.1 527 HMLVAGTTGSGKSVLVNS 544
                 79*************966 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0004      0.48       5      34 ..     525     554 ..     521     701 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeak 34 
                 a +++v G +G+GK++l++ +l +    + 
  EGE23908.1 525 APHMLVAGTTGSGKSVLVNSFLLSMLLKYT 554
                 6799***************99987654444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.22      25      46 ..     526     547 ..     503     694 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
      AAA_16  25 elvllsGesGvGKsslvrellr 46 
                 + +l+ G  G+GKs lv+++l 
  EGE23908.1 526 PHMLVAGTTGSGKSVLVNSFLL 547
                 899***************9985 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00087         1      34      59 ..     524     549 ..     511     616 .. 0.77
   2 ?    0.7   0.0      0.25   2.9e+02       2      25 ..     826     849 ..     825     866 .] 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00087
        TniB  34 rmpnlllvGdsnnGKtmivekFarlh 59 
                 + p++l++G +  GK+++v++F  + 
  EGE23908.1 524 KAPHMLVAGTTGSGKSVLVNSFLLSM 549
                 679*******************8554 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.25
        TniB   2 iayiradrwigyprakeilerLee 25 
                 i  ++++  igy+ra+++l+++ee
  EGE23908.1 826 ISSVQRKFSIGYNRAARLLDQMEE 849
                 567888999*************86 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0002      0.24      20      46 ..     526     552 ..     520     567 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
      ATPase  20 rvvlitGepGtGKtifalqFlikgaek 46 
                   +l++G++G+GK++++  Fl++ + k
  EGE23908.1 526 PHMLVAGTTGSGKSVLVNSFLLSMLLK 552
                 579******************987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 5972.77
//
Query:       EGE23909.1  [L=257]
Description: phosphate ABC transporter ATP-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-35  120.4   0.1      1e-34  120.0   0.1    1.2  1  ABC_tran     ABC transporter
    4.6e-13   49.6   0.4    1.2e-06   28.6   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    1.4e-08   34.5   0.3    4.6e-08   32.8   0.3    1.7  1  SMC_N        RecF/RecN/SMC N terminal domain
    4.2e-05   22.4   0.0     0.0077   14.9   0.0    2.1  2  AAA_13       AAA domain
    0.00078   19.3   0.1       0.34   10.6   0.0    2.1  2  AAA_15       AAA ATPase domain
     0.0013   18.4   0.3     0.0025   17.5   0.3    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0023   16.8   0.0        1.1    8.0   0.0    2.3  2  ABC_ATPase   Predicted ATPase of the ABC class
     0.0047   17.3   0.4      0.013   15.9   0.4    1.8  1  AAA_16       AAA ATPase domain
      0.007   16.9   1.0      0.013   16.1   1.0    1.7  1  AAA_23       AAA domain
  ------ inclusion threshold ------
       0.01   15.0   0.3      0.012   14.8   0.3    1.3  1  G-alpha      G-protein alpha subunit
      0.016   15.1   0.6      0.051   13.5   0.3    1.9  2  RsgA_GTPase  RsgA GTPase
       0.02   15.2   0.5       0.13   12.5   0.5    2.1  1  AAA_22       AAA domain
      0.038   13.7   0.0       0.06   13.1   0.0    1.3  1  PRK          Phosphoribulokinase / Uridine kinase family
      0.055   13.6   0.0      0.084   13.0   0.0    1.7  1  AAA_33       AAA domain
      0.098   12.6   0.0       0.25   11.2   0.0    1.7  1  NACHT        NACHT domain
        0.1   12.2   0.1       0.24   11.0   0.1    1.7  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
       0.11   11.6   0.0       0.23   10.6   0.0    1.4  1  NB-ARC       NB-ARC domain
       0.11   12.1   0.0       0.25   11.0   0.0    1.7  1  AAA_30       AAA domain
       0.23   11.5   1.2       0.32   11.1   0.3    1.6  2  DUF87        Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.1   1.1e-37     1e-34       1     137 []      24     182 ..      24     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 1.1e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG............B-HHHCCHCEEEE-SS--S-TTSBHHHH........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke............qeleslrkeigvlpqepqlfpeltvren........ 79 
                 lk vsl+ + g ++ i+G++G+GKStLl+++  l+kpt+G+i + ++ lk             ++le+lr++ig+++q+ +l+p++t+ +n        
  EGE23909.1  24 LKGVSLTAYDGDVISILGSSGSGKSTLLRCINLLEKPTSGKIIVGQETLKLkshkgelvaadnKQLEKLRSKIGFVFQNFNLWPHKTILQNiiegptqv 122
                 799***************************************6666666657888999999999*********************************** PP

                 ......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ......esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                       ++ +++e++l+k+gl ++kd      p +LSgGq+qrva+ar+l+ +p++ll+DEpt+
  EGE23909.1 123 lgiskaDAIKDAERLLTKVGLLDKKDAY----PDNLSGGQRQRVAIARSLAMQPQVLLFDEPTS 182
                 *986544444589999999998855555....5*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2     1e-06   0.00097       4      83 ..      39     105 ..      36     118 .. 0.88
   2 !   28.6   0.0   1.3e-09   1.2e-06     230     297 ..     147     211 ..     121     215 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1e-06
      AAA_21   4 liGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv 83 
                 + G  gsGKS+LL+++ ll            e++ +g+i++    l l++ +++ + +++ +++++ r + g+ + ++++
  EGE23909.1  39 ILGSSGSGKSTLLRCINLL------------EKPTSGKIIVGQETLKLKSHKGELVAADN-KQLEKLRSKIGFVFQNFNL 105
                 89*****************............9999********************99999.9999999999999888777 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.3e-09
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 ++  +++lS G+++  a++ +l+ ++    +ll+DEp + L+P+l+ ++l +++el+++g   +++TH
  EGE23909.1 147 KDAYPDNLSGGQRQRVAIARSLAMQP---QVLLFDEPTSALDPELVNEVLAVMRELADEGRTMLIVTH 211
                 55677899*****9999999999999...9************************************** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.3   4.9e-11   4.6e-08      23     207 ..      33     221 ..      16     232 .. 0.72

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 4.9e-11
                 TSSEEEEEESTTSSHHHHHHHHHH.........HCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilF.........vLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseyk 112
                 +  + +i+G+ GSGKs ll  i           + G+++  kl+s+k + +    +++ +  + ++  +f+n +       ++ +i ++++++ ++   
  EGE23909.1  33 DGDVISILGSSGSGKSTLLRCINLlekptsgkiIVGQETL-KLKSHKGELVAA-DNKQLEKLRSKIGFVFQNFNLW-----PHKTILQNIIEGPTQVLG 124
                 556789***************9642222222215665444.888887665554.4888888899999999999887.....556666667666666666 PP

                 ETTEEE-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 113 ingkevtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlek 204
                 i + ++  k+ ++ll ++g+  +      +LSgG+++ va+a  +A+q   p+ + l+De  +aLD + v++v  +++e  ++   +++++++ ++ ++
  EGE23909.1 125 ISKADAI-KDAERLLTKVGLLDKkdaypdNLSGGQRQRVAIARSLAMQ---PQ-VLLFDEPTSALDPELVNEVLAVMRELADEgRTMLIVTHEMRFARE 218
                 6655543.455555555555433344444**************99986...44.569*********************999885778999999888877 PP

                 -SC CS
                 xxx RF
       SMC_N 205 adk 207
                 +++
  EGE23909.1 219 VSS 221
                 654 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.2    0.0056       5.3      21      53 ..      39      65 ..      37     162 .. 0.72
   2 !   14.9   0.0   8.1e-06    0.0077     526     580 ..     171     222 ..     161     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0056
      AAA_13 21 iYGwNGaGKTtLSrllrslelgetepkfangsi 53
                i G+ G+GK+tL r ++ le+   + k     i
  EGE23909.1 39 ILGSSGSGKSTLLRCINLLEKPT-SGK-----I 65
                67999*************97533.333.....3 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 8.1e-06
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                 + ++  +D P S LD + ++ v   +++ +   ++ + ++i TH + f +ev+ +
  EGE23909.1 171 QPQVLLFDEPTSALDPELVNEVLAVMRELA---DEGRTMLIVTHEMRFAREVSSK 222
                 67899************************9...99****************9875 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.4    0.0045       4.2      25      50 ..      36      61 ..      24      81 .. 0.76
   2 !   10.6   0.0   0.00036      0.34     235     364 ..      78     211 ..      65     216 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0045
      AAA_15 25 ltvliGkNnsGKSsilealdlFlnnk 50
                +  + G  +sGKS++l+ ++l+ + +
  EGE23909.1 36 VISILGSSGSGKSTLLRCINLLEKPT 61
                66788999************998866 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00036
      AAA_15 235 eeelteklkeiqeklkeidkklaeelk.....kilkkkidkikkfnykgkkneeieik.........ddeelplnknGsGvqrllllillileaekkde 319
                 + el  + ++ +ekl+ +++ + ++ +      il+++i+   ++   +k +  ++ +         d+ + + ++ + G+++ + ++  +++  +   
  EGE23909.1  78 KGELVAADNKQLEKLRSKIGFVFQNFNlwphkTILQNIIEGPTQVLGISKADAIKDAErlltkvgllDKKDAYPDNLSGGQRQRVAIARSLAMQPQ--- 173
                 556666677777777777777777777788776666666666555555555555555588889*********************999876665554... PP

      AAA_15 320 keeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                       +ll++EP   L p++ +++   ++ela++++   +i TH
  EGE23909.1 174 ------VLLFDEPTSALDPELVNEVLAVMRELADEGR-TMLIVTH 211
                 ......6*****************************9.6666677 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3   2.6e-06    0.0025      23      44 ..      34      56 ..      23      65 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.6e-06
      AAA_29 23 g.atlltGpsGsGKSTllDAiqa 44
                g ++ + G sGsGKSTll  i+ 
  EGE23909.1 34 GdVISILGSSGSGKSTLLRCINL 56
                55889************966655 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0046       4.4     245     265 ..      34      55 ..      20      57 .. 0.85
   2 !    8.0   0.0    0.0011       1.1     321     352 ..     152     183 ..     144     185 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0046
                 S.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 245 G.vtlIvGggfhGKsTLLeAle 265
                 G v+ I G+   GKsTLL+ ++
  EGE23909.1  34 GdVISILGSSGSGKSTLLRCIN 55 
                 55999**************986 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0011
                 SS--HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 321 edASGStsqAanimealeagakllLiDEDtsA 352
                 ++ SG   q ++i+++l ++ ++lL+DE tsA
  EGE23909.1 152 DNLSGGQRQRVAIARSLAMQPQVLLFDEPTSA 183
                 6789***************************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   1.4e-05     0.013      25      59 ..      35      64 ..      22     228 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrgk 59
                 ++ + G sG+GKs+l+r++   lek     ++gk
  EGE23909.1 35 DVISILGSSGSGKSTLLRCIN-LLEKP----TSGK 64
                67899**************99.77777....3333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.0   1.3e-05     0.013      20      41 ..      35      56 ..      16     179 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.3e-05
      AAA_23 20 gltlItGpNGaGKTTildAikl 41
                 +  I G  G+GK+T+l++i l
  EGE23909.1 35 DVISILGSSGSGKSTLLRCINL 56
                5778****************86 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.3   1.3e-05     0.012      26      50 ..      37      61 ..      30     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
                EEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkg 50
                + +lG+s+SGKsT+l+ + ll+k++
  EGE23909.1 37 ISILGSSGSGKSTLLRCINLLEKPT 61
                568*******************998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   5.5e-05     0.051      98     120 ..      33      55 ..      14      80 .. 0.82
   2 ?   -0.9   0.0       1.4   1.3e+03      49      66 ..     121     138 ..     108     176 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-05
                  TTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinall 120
                  +++++ ++G+SG GKStL+  ++
   EGE23909.1  33 DGDVISILGSSGSGKSTLLRCIN 55 
                  5688999***********98775 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
                  EEEEEE-GGG--HHHHHH CS
  RsgA_GTPase  49 pvivlnKiDlleeeeele 66 
                   v+ ++K+D ++++e+l 
   EGE23909.1 121 QVLGISKADAIKDAERLL 138
                  577889999999888443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   0.00014      0.13       6      66 ..      35     105 ..      31     216 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee..............erpevvfvtlpsstsskdllrellralgl 66 
                  ++ + G sG+GK+tllr +    +     +               ++ e+v  + ++++++++    ++++++l
  EGE23909.1  35 DVISILGSSGSGKSTLLRCINLLEKP----TSgkiivgqetlklksHKGELVAADNKQLEKLRSKIGFVFQNFNL 105
                 57899*************88776521....112344556666666655555555555555555555555555555 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.3e-05      0.06       1      51 [.      36      84 ..      36     106 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.3e-05
         PRK  1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdlele 51
                vI++ gsSG+Gk+t+ r ++ +++ +    + i g++ l+l++ + +l ++
  EGE23909.1 36 VISILGSSGSGKSTLLRCIN-LLE-KPTSGKIIVGQETLKLKSHKGELVAA 84
                8**************99885.444.33344555666666666655555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.9e-05     0.084       1      39 [.      36      79 ..      36     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.9e-05
      AAA_33  1 lvllvGlpGsGKstlae..rllkklg..avllssdtlrr.rlfg 39
                ++ + G +GsGKstl++  +ll+k +   +++ + tl+   ++g
  EGE23909.1 36 VISILGSSGSGKSTLLRciNLLEKPTsgKIIVGQETLKLkSHKG 79
                56678***********9444687777887888888865533333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00027      0.25       2      20 ..      36      54 ..      35      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                ++ + G +GsGK+tLl+ +
  EGE23909.1 36 VISILGSSGSGKSTLLRCI 54
                7889************977 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00026      0.24       2      34 ..      36      68 ..      35      94 .. 0.64
   2 ?   -2.4   0.0       3.3   3.1e+03     103     119 ..     128     144 ..     118     176 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
                EEEEEESTTCCHHHHHHHHHCT--SS-EEEEES CS
        cobW  2 vtvltGflGsGKTtLlnhllenraglklavivN 34
                v+ + G+ GsGK+tLl+ +   ++  +  +iv+
  EGE23909.1 36 VISILGSSGSGKSTLLRCINLLEKPTSGKIIVG 68
                67899***********97764444444444443 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.3
                 SHHHHHCCCECEEEEEE CS
        cobW 103 eeelksdltldavvavv 119
                 ++ +k++ +l ++v ++
  EGE23909.1 128 ADAIKDAERLLTKVGLL 144
                 33333333444444444 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00025      0.23      20      41 ..      34      55 ..      22      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
                SEEEEEEESTTSSHHHHHHHHC CS
      NB-ARC 20 slvvalvGmgGvGKttlakqil 41
                 +v+++ G  G+GK+tl++ i+
  EGE23909.1 34 GDVISILGSSGSGKSTLLRCIN 55
                459**************99875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00027      0.25      16      74 ..      33     104 ..      26     209 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
      AAA_30  16 sgdrvavltGpAGtGKttalkalreaweaa.g.............grviglAptgkaAkvLaeelgieastia 74 
                 +gd v  + G  G+GK+t+l+ ++ + +   g             ++  ++A  +k+ ++L+ ++g+  ++ +
  EGE23909.1  33 DGD-VISILGSSGSGKSTLLRCINLLEKPTsGkiivgqetlklksHKGELVAADNKQLEKLRSKIGFVFQNFN 104
                 444.78899************9988877774566666666666665566666666666666666666555554 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00034      0.32      27      43 ..      38      54 ..      36      67 .. 0.82
   2 ?   -2.7   0.0       5.5   5.2e+03     169     182 ..      86      99 ..      69     150 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
       DUF87 27 AilgsTGsGKSntvavL 43
                 ilgs+GsGKS++ + +
  EGE23909.1 38 SILGSSGSGKSTLLRCI 54
                7************9977 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.5
       DUF87 169 ldkledllrkggsf 182
                 +++le+l +k g+ 
  EGE23909.1  86 NKQLEKLRSKIGFV 99 
                 33444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 1875.64
//
Query:       EGE23910.1  [L=262]
Description: extracellular solute-binding protein family 3 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-54  184.8   0.2    1.7e-54  184.6   0.2    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    8.5e-10   38.8   0.1    5.5e-09   36.2   0.0    2.3  2  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.6   0.2   1.9e-58   1.7e-54       1     224 [.      39     258 ..      39     259 .. 0.94

  Alignments for each domain:
  == domain 1  score: 184.6 bits;  conditional E-value: 1.9e-58
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 ++++++a+ypPf+  d++g++ Gfdvd+++a+++++   ++++ ++wd+lip+l +gk+D++ia+++itpeR+++vdFs++yfs+++v l++++     
  EGE23910.1  39 IVIATEAAYPPFNDTDASGQIIGFDVDVMNALCAEMHAHCQIIAQDWDGLIPSLLAGKYDAIIAGMSITPERQAQVDFSDSYFSNTIVWLAKSDG---- 133
                 789****************************************99***********************************************643.... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC..TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEEEEEEETTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkk..gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseeyaiavrkgd 195
                  s+ +++++ +++++ q+g+t +++++e++    g +++  dt+++a+++ k+gr  av+a+++++ +++k+++++++ l+ ee  + + ++iavrkgd
  EGE23910.1 134 -SF-DPNNITNQTLASQRGTTGAAYITEKYDGkdGNRVQLHDTYTNAYLDTKAGRNHAVMAEKVSAIDWLKQEGNGEFGLIgEEIDNNDHLGIAVRKGD 230
                 .56.478999****************997765988899999****************************************999999999999999988 PP

                 HHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 196 seLrkainkalaelkadgtlakisekWfg 224
                 s L++++++ala++k++g+la+i++ +f+
  EGE23910.1 231 S-LKAEFDAALAKIKESGKLAEIEKAHFQ 258
                 5.**********************99986 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   6.1e-13   5.5e-09      64     112 ..      82     130 ..      37     132 .. 0.91
   2 ?   -2.5   0.0      0.66   5.9e+03      67      84 ..     208     225 ..     192     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 6.1e-13
                      TTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEE CS
  Lig_chan-Glu_bd  64 kkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilik 112
                       + w+G+i +ll++k d ++a ++it+eR+  vdF++ + +  i  l k
       EGE23910.1  82 AQDWDGLIPSLLAGKYDAIIAGMSITPERQAQVDFSDSYFSNTIVWLAK 130
                      458**************************************99998877 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.66
                      B-HHHHHHHTTS-SEE-S CS
  Lig_chan-Glu_bd  67 wnGmigellekkadlava 84 
                        G+ige ++++ +l++a
       EGE23910.1 208 EFGLIGEEIDNNDHLGIA 225
                      458999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2004.04
//
Query:       EGE23911.1  [L=265]
Description: extracellular solute-binding protein family 3 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-62  209.9   1.5    3.7e-62  209.7   1.5    1.1  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    4.3e-09   36.6   0.0    1.2e-07   31.9   0.0    2.6  2  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.7   1.5   4.1e-66   3.7e-62       1     224 [.      43     259 ..      43     260 .. 0.96

  Alignments for each domain:
  == domain 1  score: 209.7 bits;  conditional E-value: 4.1e-66
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 l+++++ +++Pfsy d++g+l+Gf++dla+a++k+++ ++++v ++wd+lip+l+++k D+++a+++it+eR   vdFs+pyf++++vl+ +k++   +
  EGE23911.1  43 LIIATESSFKPFSYLDKQGQLVGFEIDLANALCKQMQADCQIVSQDWDSLIPSLNANKSDAIMAGMSITEERLNAVDFSEPYFDNTLVLIGKKDN---T 138
                 789****************************************99***********************************************653...3 PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseL 198
                  +i+   d++gk v++q++++++e+l+++++ +a+i+++d +++a+++L +grv+ ++ d + + ++++++++ ++++ + p++  + ++++ ++ds+L
  EGE23911.1 139 ATIN---DIAGKAVATQQATVSAEYLQKHYP-DANIKTYDKQDNAYLDLTAGRVEFMLSDVVPATDWLATEAGSEFEIKGMPIDIGDKVGIAVRKDSSL 233
                 5777...*********************887.9********************************************9988999888888888999*** PP

                 HHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 199 rkainkalaelkadgtlakisekWfg 224
                 ++ +++ala+lk++g++++i +k+f+
  EGE23911.1 234 KADFDAALASLKTNGKYDEIVAKYFN 259
                 *************************8 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.5   1.3e+04      31      44 ..      12      25 ..       9      36 .. 0.74
   2 !   31.9   0.0   1.3e-11   1.2e-07      63     113 ..      85     135 ..      41     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.5
                     HHHHHHHHHHHHHT CS
  Lig_chan-Glu_bd 31 fcidLlkelakklg 44
                     fc+ Ll + +++  
       EGE23911.1 12 FCVSLLAACSNEST 25
                     89999988887654 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 1.3e-11
                      TTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEES CS
  Lig_chan-Glu_bd  63 kkkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilikk 113
                       ++ w+ +i +l ++k d ++a ++it+eR ++vdF++p+ +  + ++ kk
       EGE23911.1  85 VSQDWDSLIPSLNANKSDAIMAGMSITEERLNAVDFSEPYFDNTLVLIGKK 135
                      3457*************************************9998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2074.18
//
Query:       EGE23912.1  [L=265]
Description: extracellular solute-binding protein family 3 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-63  213.8   0.2    2.4e-63  213.6   0.2    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    1.2e-09   38.3   0.0      4e-09   36.7   0.0    1.9  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.6   0.2   2.7e-67   2.4e-63       1     225 []      36     257 ..      36     257 .. 0.96

  Alignments for each domain:
  == domain 1  score: 213.6 bits;  conditional E-value: 2.7e-67
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 lr++++++y+Pf+y +++g l Gfdvd+a+a++++++ +++++ ++wd++ipalk+gk+D+++aa+++tpeR e+vdFs+pyf++++v+l++k+++ ++
  EGE23912.1  36 LRIATEGTYAPFNYTNPDGSLGGFDVDIANALCNKMQTECQIIAQDWDGIIPALKTGKFDAIVAAMSVTPERSEQVDFSEPYFVNSLVFLAKKGSNFDP 134
                 79*****************************************99***********************************************9877655 PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEEEEEEETTTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseeyaiavrkgdse 197
                 ss    + +++ k+++q+++ ++++l+++++ + + + +dtl++a+ +L n+r+da++ d+  +  ++  + ++++++  +  +  +++ iav kg+++
  EGE23912.1 135 SST---DAINNAKIVAQRSTISSQWLTQTYP-NSKPQLYDTLDNAFIDLGNERADAMISDKLPALTWLSSDLGQNFEIKgGDININDKVSIAVDKGNTA 229
                 554...59999*****************998.678889****************************************99999999************* PP

                 HHHHHHHHHHHHHHTTHHHHHHHHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 198 LrkainkalaelkadgtlakisekWfge 225
                 L++++n+ala++kadgt+++i  k+fge
  EGE23912.1 230 LLQKFNEALAAIKADGTYKQIVIKHFGE 257
                 **************************96 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   4.4e-13     4e-09      64     113 ..      79     128 ..      35     130 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 4.4e-13
                      TTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEES CS
  Lig_chan-Glu_bd  64 kkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilikk 113
                       + w+G+i  l ++k d +va++++t+eR+e vdF++p+   ++ +l kk
       EGE23912.1  79 AQDWDGIIPALKTGKFDAIVAAMSVTPERSEQVDFSEPYFVNSLVFLAKK 128
                      358*************************************9999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2151.08
//
Query:       EGE23913.1  [L=56]
Description: hypothetical protein EA1_07965 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 466.89
//
Query:       EGE23914.1  [L=240]
Description: amino acid ABC transporter permease protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-18   66.4  16.6      4e-18   65.8  16.6    1.2  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.054   13.8   0.0      0.088   13.1   0.0    1.3  1  DUF3239       Protein of unknown function (DUF3239)
        0.1   12.9   0.0       0.16   12.2   0.0    1.3  1  MAP17         Membrane-associated protein 117 kDa, PDZK1-inte
        8.7    6.9  21.1       0.14   12.6   2.9    2.5  2  FtsX          FtsX-like permease family


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8  16.6   8.9e-22     4e-18       2     179 ..      30     218 ..      26     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 8.9e-22
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf............vilsilg.hlilpviillllsaapyvrlirraalrslpkd 82 
                   +l+G+l a   l+  ++l+k+ + ++ +++++P +++++++++              +  + +  + +++++++l +++++y++ ++r+a++ +pk+
    EGE23914.1  30 LLFGLLGAlakLSGVWILQKIADAYTTIVRGIPELLMVFFIFFGGsiilvtiakqmgY-TGRIDvSQFWAGVTALSIMFGAYATEVFRMAIQDIPKG 125
                   55666666666999999*******************9999885549999999988852.33333256889*************************** PP

  BPD_transp_1  83 lveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrll 179
                   ++e a   G++++q++ +++lP++  ++++gl++    ll++++l++++g    l++l+  a+ + + ++  ++ +la+++++l+l+ v+ ++  + 
    EGE23914.1 126 QWESAQSIGMTPIQTLTRIILPQMWMVALPGLGNLTLVLLKDTALVSLIG----LQDLMYFAQRAAQSTQKPFTFYLAAAFIYLALTSVITLFIMWC 218
                   **************************************************....5555555555555554445557777777777777776665555 PP

>> DUF3239  Protein of unknown function (DUF3239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     2e-05     0.088      81     117 ..      94     130 ..      72     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
                 SCEECEEEEEEGGGT---HHHHHHHHHHS-HHHHHHH CS
     DUF3239  81 ketweeispmpiaWgTkdekvlkraekaIpeeeWklL 117
                 ++ w  ++++ i +g+  ++v++ a + Ip+ +W+  
  EGE23914.1  94 SQFWAGVTALSIMFGAYATEVFRMAIQDIPKGQWESA 130
                 488*******************************976 PP

>> MAP17  Membrane-associated protein 117 kDa, PDZK1-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.5e-05      0.16      16      63 ..     179     224 ..     164     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
       MAP17  16 spaeaQqatekrlkPWlvGliAvvgFLflvfvlllvnrvWcskaraed 63 
                     aQ+a ++  kP    l+A   +L l+ v+ l   +Wc+  ra+ 
  EGE23914.1 179 LMYFAQRAAQSTQKPFTFYLAAAFIYLALTSVITLF-IMWCES-RANP 224
                 45579**************************99987.57**99.6554 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4  10.4      0.35   1.6e+03      26      83 ..      19      82 ..       8     112 .. 0.63
   2 ?   12.6   2.9   3.2e-05      0.14       8      88 ..     131     220 ..     126     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.35
        FtsX 26 llitlvalviGlglgllaaql..lsdvllssvfs....selkisidlitvliiivlllllalla 83
                + ++l +lv+Gl++gll a +  +  ++l+        +   i   l+ ++i+++ +++l+++a
  EGE23914.1 19 IKLGLASLVFGLLFGLLGALAklSGVWILQKIADayttIVRGIPELLMVFFIFFGGSIILVTIA 82
                5566777777766655444333344444444431222255556666666666666666666554 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.2e-05
        FtsX   8 ralGmkkkqvl.llllteillitlvalviGlglgllaaqllsdvllss..vfs......selkisidlitvliiivlllllallagllsi 88 
                 +++Gm+  q+l +++l ++++++l++l   ++++l+ + l+s  +l+   +f+      ++ +++++l + +i ++l  +++l+++++ +
  EGE23914.1 131 QSIGMTPIQTLtRIILPQMWMVALPGLGNLTLVLLKDTALVSLIGLQDlmYFAqraaqsTQKPFTFYLAAAFIYLALTSVITLFIMWCES 220
                 78999998765278899*********999988866666665555555533111233444****************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1798.26
//
Query:       EGE23915.1  [L=241]
Description: octopine transport system permease protein OccM [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-19   69.7  14.0    3.3e-19   69.3  14.0    1.1  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        2.6    7.9   6.0        5.3    6.9   2.7    2.6  2  LapA_dom      Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3  14.0   3.7e-23   3.3e-19       1     184 [.      33     225 ..      33     226 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 3.7e-23
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf..........vilsilghlilpviillllsaapyvrlirraalrslpkdlv 84 
                   g+++G++++   l++  +l+ +  ++i++++++P +v ++l+++ +           ++ i+ ++ + +ii+++l + +y+  i+r+a+ ++p++  
    EGE23915.1  33 GLVFGVILGlwrLSPVLWLRAIPATYIFFFRGTPLLVQIFLIYYGLgqftalkesfLWDPIFSQAYWCAIIAFTLNTSAYIGEIVRGAVMAVPTGEL 129
                   799**********************************9999999999********99999999********************************** PP

  BPD_transp_1  85 eaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldp 181
                   eaa a G+s+ q +++v+lP a+  +i+   + ++++l+g++l+  ++    +  l+  a  +  +++    +++a+++++l+++ v+ ++ r ++ 
    EGE23915.1 130 EAADAIGMSKQQKLHRVILPRAFGIMIPAYSNEVIFMLKGSALAASIT----VVELTHKARDIISITYLHLEMFFAAGVIYLVISWVFLFIFRQFEH 222
                   ************************************************....8888888888877777779*************************9 PP

  BPD_transp_1 182 rvr 184
                   rv 
    EGE23915.1 223 RVN 225
                   996 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.7   0.00059       5.3       8      41 ..       9      44 ..       6      50 .. 0.79
   2 ?    1.1   0.1     0.038   3.4e+02      26      43 ..     199     220 ..     192     231 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00059
    LapA_dom  8 vnfl..faqvelpLsllllvafgiGallgwllslws 41
                +n++  +  +++  + l++++ ++G+++g++l+lw+
  EGE23915.1  9 INYFpdLLAASVTTIELVVLSCALGLVFGVILGLWR 44
                677765333467777789999**************5 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.038
    LapA_dom  26 afgiGa...llgwllsl.wsyl 43 
                 +f++G+   ++ w++ + ++++
  EGE23915.1 199 FFAAGViylVISWVFLFiFRQF 220
                 5666663224455555423333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1848.50
//
Query:       EGE23916.1  [L=453]
Description: bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-23   79.4  25.7    2.6e-08   33.3   0.6    5.4  5  Hexapep          Bacterial transferase hexapeptide (six repea
    2.6e-19   70.1   0.1    3.8e-19   69.6   0.1    1.2  1  NTP_transf_3     MobA-like NTP transferase domain
    3.6e-13   49.7   0.1    5.5e-13   49.1   0.1    1.2  1  NTP_transferase  Nucleotidyl transferase
    4.4e-13   48.7  19.5    5.8e-09   35.5   0.3    5.1  5  Hexapep_2        Hexapeptide repeat of succinyl-transferase
    4.2e-09   36.5   0.7    7.4e-09   35.7   0.7    1.5  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
    0.00068   17.9   5.5     0.0013   17.0   4.5    1.8  2  DUF4954          Domain of unknown function (DUF4954)
     0.0016   18.4   0.0     0.0081   16.1   0.0    2.1  2  CTP_transf_3     Cytidylyltransferase
      0.002   17.2   0.5     0.0087   15.0   0.2    2.1  3  Fucokinase       L-fucokinase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.5   5.3e-06     0.012       7      36 .]     267     296 ..     263     296 .. 0.95
   2 !    9.3   0.1   0.00042      0.93       7      22 ..     296     311 ..     295     314 .. 0.60
   3 !   27.5   0.0   7.5e-10   1.7e-06       2      33 ..     314     345 ..     313     348 .. 0.92
   4 !    9.0   2.6   0.00053       1.2       9      33 ..     356     379 ..     348     382 .. 0.76
   5 !   33.3   0.6   1.1e-11   2.6e-08       2      36 .]     391     425 ..     390     425 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.3e-06
                 TEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   7 nvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 +v+I+ ++v+ g+V++G +v I ag vi++
  EGE23916.1 267 DVFIDINTVFVGDVHLGMGVQIDAGNVITN 296
                 89**************************86 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00042
                 TEEE-TTEEEETTEEE CS
     Hexapep   7 nvlIgpfaviggnVkI 22 
                 n++Ig+ ++i +n++I
  EGE23916.1 296 NSHIGNQTHIKPNCVI 311
                 4556666666666666 PP

  == domain 3  score: 27.5 bits;  conditional E-value: 7.5e-10
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvv 33 
                 + IG+nv Igpfa+i++ +++ d+vkIg++v 
  EGE23916.1 314 SMIGQNVSIGPFAHIRPKTILSDDVKIGNFVE 345
                 57***************************996 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00053
                 EE-TTEEEETTEEE-TTEEEETTEE CS
     Hexapep   9 lIgpfaviggnVkIGdnvkIgagvv 33 
                 +I + ++  g+ +IG nv Igagv 
  EGE23916.1 356 KINHLSYA-GDSIIGQNVNIGAGVI 379
                 55565666.8899*********995 PP

  == domain 5  score: 33.3 bits;  conditional E-value: 1.1e-11
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 t+IG+ ++Ig+++ + ++V++G +++Igag+vi++
  EGE23916.1 391 TTIGDRAFIGSNSSLVAPVTVGMGATIGAGSVITK 425
                 89*******************************86 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.1   1.7e-22   3.8e-19       2     112 ..       6     119 ..       5     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 1.7e-22
                   EEEEESS-TTTTT..THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..CHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEEEET CS
  NTP_transf_3   2 viLAGGrSsRmgg..dKallplggkpllervldalraagvdevvvvggd..eevlaalarlgvrvvededpgkgplaslaaalraaadadavlvlac 94 
                   +iLA+G+++Rm++  +K l  l+gk+l+++vld+ ++ ++d  ++v g   e v++al  + v ++e++ ++ g++++++ al +++++   l+l +
    EGE23916.1   6 IILAAGKGTRMKSnrPKVLQTLAGKTLVQHVLDTCTQIQADGTILVYGFggEMVKEALSTHTVIFAEQT-QQLGTGHAVKMALPHLPKEGKSLILYG 101
                   8**********9777***********************9988777765555888888877666666665.69************************* PP

                   T-TT--HHHHHHHHHCHH CS
  NTP_transf_3  95 DmPlltpelverllaaaa 112
                   D+Pl ++e+++ l++a +
    EGE23916.1 102 DVPLTQAETLQNLVKANT 119
                   **************9853 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.1   2.4e-16   5.5e-13       2     217 ..       5     207 ..       4     216 .. 0.87

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 2.4e-16
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTHH CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaae 95 
                      ++ILa G+GtR+    ++  +k +  l +++l+q++l ++ + + + +i+v   +  ++v+e l++       v +a ++++ gt +Av+ a+ 
       EGE23916.1   5 TIILAAGKGTRM----KSNRPKVLQTLAGKTLVQHVLDTCTQIQADGTILVYG-FGGEMVKEALSTHT-----VIFAEQTQQLGTGHAVKMALP 88 
                      69*********9....57888999998888*************9999666665.999*******9886.....899****************** PP

                      HHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-S..SHSHCSEECCSEEEEETTHH CS
  NTP_transferase  96 lledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPk..eakaselassGiYvfnsevl 187
                       l +e +    l+L gD+  ++   e++++ ++++    +++++  v+++ + G i +d+++ v   +EK +  ++k+ + ++sGiY  ++  l
       EGE23916.1  89 HLPKEGK---SLILYGDVPLTQ--AETLQNLVKANT-SGISMLTLTVKQPFGLGRIVRDQGKVVAIVEEKDAdvQQKLITEINSGIYCVDNALL 176
                      *****97...9*******9995..566777777666.4889999999*************988888899987224555999************* PP

                      HHHHH.CCHHHTTSSCHHHHHHHHHHHTTEE CS
  NTP_transferase 188 lflak.dleelkrgedeitdilpkaleegkv 217
                      ++ +    ++ ++ge  +tdi++ a+++g +
       EGE23916.1 177 HKYLPiLNNNNAQGEYYLTDIIKLAVDDGVE 207
                      *****8889999**************99855 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   1.2    0.0058        13       7      33 ..     267     295 ..     266     296 .. 0.83
   2 ?   -0.7   0.0      0.55   1.2e+03      16      26 ..     299     311 ..     295     312 .. 0.51
   3 !    9.9   0.0   0.00027       0.6       4      28 ..     316     342 ..     315     342 .. 0.94
   4 !    6.4   2.4    0.0035       7.8       3      16 ..     367     380 ..     366     387 .. 0.76
   5 !   35.5   0.3   2.6e-12   5.8e-09       2      34 .]     391     425 ..     390     425 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0058
                 T-EE-TT-E.ES.EEE-TT-EE-TT-EE- CS
   Hexapep_2   7 nCliGanag.iG.vslGdncvvgaGvvit 33 
                 +++i  n + +G v+lG ++ ++aG vit
  EGE23916.1 267 DVFIDINTVfVGdVHLGMGVQIDAGNVIT 295
                 5666678787866**************99 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.55
                 ES..EEE-TT-EE CS
   Hexapep_2  16 iG..vslGdncvv 26 
                 iG  +++  ncv+
  EGE23916.1 299 IGnqTHIKPNCVI 311
                 4444555555655 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00027
                 E-TT-EE-TT-EE.S.EEE-TT-EE-T CS
   Hexapep_2   4 IGdnCliGanagi.G.vslGdncvvga 28 
                 IG+n+ iG++a i + ++l d++++g+
  EGE23916.1 316 IGQNVSIGPFAHIrPkTILSDDVKIGN 342
                 9************967*********97 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0035
                 EE-TT-EE-TT-EE CS
   Hexapep_2   3 iIGdnCliGanagi 16 
                 iIG+n++iGa  ++
  EGE23916.1 367 IIGQNVNIGAGVIT 380
                 79999999999874 PP

  == domain 5  score: 35.5 bits;  conditional E-value: 2.6e-12
                 EEE-TT-EE-TT-E.E.SEEE-TT-EE-TT-EE-S CS
   Hexapep_2   2 viIGdnCliGanag.i.GvslGdncvvgaGvvita 34 
                 ++IGd+ +iG+n+  + +v++G ++++gaG+vit+
  EGE23916.1 391 TTIGDRAFIGSNSSlVaPVTVGMGATIGAGSVITK 425
                 69**********99768*****************7 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.7   3.3e-12   7.4e-09       2     120 ..       4     121 ..       3     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 3.3e-12
                 EEEEECTTSSCTT-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHHHHGGCCEEEEE--SS..HHHHHHHHHHTTSSTTSEEEE- CS
        IspD   2 vvvipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvvvseddteefeqllldksiqlvaGGde..RaesVlnglkalegeakfVLvH 98 
                 + +i AAG+G+Rmk+++pK + +l+g+tl++h +d+  + +a ++i+v     +    e+l++++ +   +  ++    ++V+ +l  l++e k  L+ 
  EGE23916.1   4 HTIILAAGKGTRMKSNRPKVLQTLAGKTLVQHVLDTCTQIQADGTILVYGFGGE-MVKEALSTHT-VIFAEQTQQlgTGHAVKMALPHLPKEGK-SLIL 99 
                 689************************************999999999999998.5667888885.3333333321235899****99998854.4666 PP

                 -TT-TT--HHHHHHHHHHHHTT CS
        IspD  99 DaARpllkaadiaellaaaeqs 120
                  +  pl++a+++++l++a+  +
  EGE23916.1 100 YGDVPLTQAETLQNLVKANTSG 121
                 677899****999999988753 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.3   7.2e-05      0.16     223     270 ..     274     321 ..     254     329 .. 0.90
   2 !   17.0   4.5   5.7e-07    0.0013     175     257 ..     298     377 ..     286     383 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7.2e-05
     DUF4954 223 gViledfiissGskikdgavisrcfvGqavklkkqfsaedsllfaNcq 270
                  V + d+ + +G +i  g vi+++ +G+ +++k +  + ds++++N +
  EGE23916.1 274 TVFVGDVHLGMGVQIDAGNVITNSHIGNQTHIKPNCVIDDSMIGQNVS 321
                 57788899999**********************************986 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.7e-07
     DUF4954 175 eigekvkilnaglikNvkigdyatiegasklengtinSskeapveiGegViledfiissGskikdgavisrcfvGqavklkkq 257
                 +ig++++i+   +i   +ig+  +i    +++  ti S     v+iG+ V+++ + +  Gski++ + + ++++Gq+v+++ +
  EGE23916.1 298 HIGNQTHIKPNCVIDDSMIGQNVSIGPFAHIRPKTILSD---DVKIGNFVETKKTTVGVGSKINHLSYAGDSIIGQNVNIGAG 377
                 466666666666666666666666666666777888886...599**********************************9875 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.6e-06    0.0081       7     118 ..      15     121 ..       5     166 .. 0.73
   2 ?   -1.6   0.0      0.93   2.1e+03      72     122 ..     140     193 ..     135     213 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.6e-06
                   -SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTTSEEEE--TTCSSHHHHHHHHHHHHTTT.TTSEEEEE-TT-TT- CS
  CTP_transf_3   7 RsgSkRlpgKnlldlggkpliayvleaalkskafekvivaTDseeiknvakefgasvlvtrsslesdterflevvkaflmseneeiivnlqGdnPll 103
                   R++S R   K+l+ l+gk+l+++vl+   +++a   + v     e++  a +  + v++ ++  + +t   +++   +l++e     + l+Gd Pl+
    EGE23916.1  15 RMKSNR--PKVLQTLAGKTLVQHVLDTCTQIQADGTILVYGFGGEMVKEALST-HTVIFAEQTQQLGTGHAVKMALPHLPKEG--KSLILYGDVPLT 106
                   444444..5************************77788876555555544444.79999999999999999999999999944..555589****** PP

                   -HHHHHHHHHHHHHS CS
  CTP_transf_3 104 qeevikkaietlken 118
                   q e++++++++    
    EGE23916.1 107 QAETLQNLVKANTSG 121
                   *******99987665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.93
                   SHHHHHHHHHHHHTTT.TTSEEEEE-TT-TT--HHHHHHHHHHHHHSTTS...S CS
  CTP_transf_3  72 sdterflevvkaflmseneeiivnlqGdnPllqeevikkaietlkenqed...y 122
                   +d+  +++ v++ +++ ++++i ++ +   +++  ++ k +  l++n+ +   y
    EGE23916.1 140 RDQGKVVAIVEEKDADVQQKLITEINSGIYCVDNALLHKYLPILNNNNAQgeyY 193
                   566777788888888888889999999888888888888888888776555533 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.8   4.1e+03     134     157 ..     162     185 ..     154     197 .. 0.77
   2 !   15.0   0.2   3.9e-06    0.0087     271     306 ..     289     324 ..     255     343 .. 0.77
   3 ?   -1.1   0.0      0.31   7.1e+02     286     330 ..     356     399 ..     335     407 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.8
  Fucokinase 134 vlldsGvvffdhktaekLlklyke 157
                 + + sG++++d +   k l ++++
  EGE23916.1 162 TEINSGIYCVDNALLHKYLPILNN 185
                 568899999999999888887774 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.9e-06
  Fucokinase 271 kesavvinSvlessvsvgegsviehsslkgnvsigs 306
                 +++ v++nS + ++ ++++++vi +s +++nvsig 
  EGE23916.1 289 DAGNVITNSHIGNQTHIKPNCVIDDSMIGQNVSIGP 324
                 677888888888888888888888888888888885 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.31
  Fucokinase 286 svgegsviehsslkgnvsigsnsivsglelesseeslelpddtil 330
                 +++  s+  +s +++nv+ig++ i  + +  ++ +  ++ d+ ++
  EGE23916.1 356 KINHLSYAGDSIIGQNVNIGAGVITCNYDGINKFT-TTIGDRAFI 399
                 45555666689999999999999988887777655.677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3053.57
//
Query:       EGE23917.1  [L=614]
Description: GTP-binding protein TypA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-52  176.6   0.0    5.9e-52  176.0   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    5.1e-24   84.1   0.1    1.4e-23   82.7   0.1    1.8  1  EFG_C        Elongation factor G C-terminus
    4.7e-10   39.7   1.9    1.5e-09   38.1   1.9    2.0  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    6.5e-05   23.0   0.1    0.00014   21.9   0.1    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0014   18.7   0.0     0.0032   17.5   0.0    1.5  1  EFG_II       Elongation Factor G, domain II
     0.0089   15.3   0.1      0.015   14.6   0.1    1.3  1  Septin       Septin
  ------ inclusion threshold ------
      0.012   15.8   0.0       0.11   12.7   0.0    2.3  1  Roc          Ras of Complex, Roc, domain of DAPkinase
       0.16   11.4   0.0       0.52    9.7   0.0    1.8  1  SRPRB        Signal recognition particle receptor beta subuni


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   0.0   2.6e-55   5.9e-52       2     192 ..       7     203 ..       6     205 .. 0.92

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 2.6e-55
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE....TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle....ketkkylinliDtPGHvdFskevirglrvlDg 96 
                  +rni+ii+hvDhGKtTL+d+Ll+++ga  +++ +   erv+D+++ E ergiTi ++++ +     ++ ++y+in++DtPGH+dF  ev+r ++++D+
  EGE23917.1   7 HLRNIAIIAHVDHGKTTLVDKLLQQSGALGERSGEI--ERVMDSNALESERGITILAKNTAIRwtdkRTNTEYRINIVDTPGHADFGGEVERVMSMVDC 103
                 689*************************99966655..699**********************99865999**************************** PP

                 EEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB..........THHHHH CS
    GTP_EFTU  97 avlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge..........gvktll 185
                 ++l+vd++eG++pqt+ v + a ++g+++iv+iNK+D++ a+ ++++++v + +    ++l++  e+   ++p+v++S+++g            +++l+
  EGE23917.1 104 VLLLVDSQEGPMPQTRFVTQKAFARGLKPIVVINKIDKPAARADWVIDQVFDLF----DSLDATDEQL--DFPIVYASGINGIaglepdnladDMTPLF 196
                 ***************************************************999....6666666664..7************9888888888888999 PP

                 HHHHHHS CS
    GTP_EFTU 186 ealvell 192
                 e++v+ +
  EGE23917.1 197 ETIVDIV 203
                 9999876 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.1   6.3e-27   1.4e-23       2      83 ..     405     486 ..     404     492 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 6.3e-27
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--H CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpg 83 
                 ++EP+++v+ +v+e+++g+v++++ +r+Ge+++me d++gr++iea++P+++ligf++++ ++T+G+g+++++fs+Y +v+ 
  EGE23917.1 405 MCEPYENVTFDVEEQHQGAVMQEMGNRKGELTNMEVDGKGRIRIEATVPSRGLIGFRSAFLTMTSGTGIMTSSFSHYGPVKD 486
                 79*****************************************************************************986 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   1.9   6.8e-13   1.5e-09       1      74 []     228     298 ..     228     298 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 6.8e-13
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G++  gr+ +G +k++  v i   d+++ +  +ri ++   h+ e+ +v+ a+aG+i+ i g+++ + ++dt++
   EGE23917.1 228 GVIGVGRIQRGSVKTNTPVAI--IDKDGNKRNGRILKIMGYHGLERVDVESAQAGDIICITGIDS-LNISDTIC 298
                  67889****************..666666777*********************************.9*****98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   6.4e-08   0.00014       2     114 .]      11     138 ..      10     138 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6.4e-08
                 EEEEESTTSSHHHHHHHHHT................STEEESSSTTSSSSEEEEEEEETTEE......EEEEECGGCSSHHHHHHHHHHHHHHHHC.TS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg................ekaivsdkpgtTrdinegrvklkgke......ielvDtpGliegaseekglgkaflalee.ad 77 
                 +ai+ +   GK+tL+ +l++                +    +++ g T+  +   +++ +k+      i++vDtpG         ++g +++++ + +d
  EGE23917.1  11 IAIIAHVDHGKTTLVDKLLQqsgalgersgeiervmDSNALESERGITILAKNTAIRWTDKRtnteyrINIVDTPG-H------ADFGGEVERVMSmVD 102
                 889999999**********6555666666655443322344555566766666656533222334444********.3......34666666666647* PP

                 EEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  78 lillvvdaseeklkpldeeleelleeakkplilvlnk 114
                  +ll+vd++ e+  p+ + + +    ++ + i+v+nk
  EGE23917.1 103 CVLLLVDSQ-EGPMPQTRFVTQKAFARGLKPIVVINK 138
                 *******55.778788777777765556666788876 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.4e-06    0.0032      20      66 ..     339     385 ..     333     392 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.4e-06
      EFG_II  20 klskaLarlleEDptlrverdeeTketilsGmGelHleivverlkre 66 
                 ++ + L+r l     lrve  +  + + +sG GelHl +++e+++re
  EGE23917.1 339 NIRERLDRELIHNVALRVEDTDSPEKFKVSGRGELHLSVLIENMRRE 385
                 6777888888888999999888889999*****************98 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   6.7e-06     0.015       7      75 ..      11      90 ..       8     112 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.7e-06
                EEEEEBTTSSCCCCCCTTSSSS----.......--------------S-EEEEEEEE..ET..TCEEEEEEEE---BSSS CS
      Septin  7 lmvvGesglGkttlintlfetdliee.......ekleeasekkkktveikkkkvvie..ed..gvklnltviDtpgfGda 75
                + ++ +   Gkttl++ l++++           + +++++ ++++ ++i +k++ i   ++  +++ +++++Dtpg+ d+
  EGE23917.1 11 IAIIAHVDHGKTTLVDKLLQQSGALGersgeieRVMDSNALESERGITILAKNTAIRwtDKrtNTEYRINIVDTPGHADF 90
                667788899**********998654446888865566666688888999877777642233348899*********7765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.9e-05      0.11      27     120 .]      50     141 ..      10     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.9e-05
                 EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  27 kekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlkelkkvagkspvilvgnkiDl 120
                   +s  g+++l k++  i+ +++ ++ +++++ni Dt G+ +f    +  ++  ++++l++ds++    ++ +   k+ a+  + i+v+nkiD+
  EGE23917.1  50 ALESERGITILAKNT-AIRWTDK-RTNTEYRINIVDTPGHADFGGEVERVMSMVDCVLLLVDSQEGPMPQTRFVTQKAFARGLKPIVVINKIDK 141
                 345677888888885.5766554.45578**********************************999988888888899999999999*****95 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00023      0.52       4      85 ..       9     110 ..       6     115 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00023
                 -EEEEE-STTSSHHHHHHHHHHS....................S---B---SS-EEETTG......GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEE CS
       SRPRB   4 pavllvGlsdsGKTslftrLttd....................svkktvtSqessaalkv...ksekgskltliDfPGheklrqklleklkaksslkgl 79 
                 +++ ++   d GKT+l  +L+++                    + ++  t +++++a +    +++ + +++++D PGh  +  ++       s +  +
  EGE23917.1   9 RNIAIIAHVDHGKTTLVDKLLQQsgalgersgeiervmdsnalESERGITILAKNTAIRWtdkRTNTEYRINIVDTPGHADFGGEVERV---MSMVDCV 104
                 5677888999***********999999999999988888776655555555566666665444566777899*******9998876554...5556666 PP

                 EEEEET CS
       SRPRB  80 vfvvDS 85 
                 + +vDS
  EGE23917.1 105 LLLVDS 110
                 666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4419.00
//
Query:       EGE23918.1  [L=453]
Description: outer membrane protein CD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-21   76.0   0.2    4.6e-21   75.0   0.2    1.5  1  OmpA       OmpA family
    1.2e-08   35.2   1.5    2.1e-08   34.5   1.5    1.4  1  OMP_b-brl  Outer membrane protein beta-barrel domain
      0.001   18.7   1.1     0.0019   17.9   1.1    1.4  1  TSP_3      Thrombospondin type 3 repeat
     0.0012   18.6   0.9       0.23   11.2   0.2    2.3  2  OprF       OprF membrane domain


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.2     1e-24   4.6e-21       1      95 []     331     430 ..     331     430 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 1e-24
                 .B-TTS--B-GGGHHHHHHHHHHHH.S-S--EEEEE---S...---HHHHHHHHHHHHHHHHHHHHH.TTSSGGGEEEEE-TT--------------EE CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk.kpeqkitveGhtda...agseernweLSqkRAeaVanylqn.egvppsrisvsgyGaerpitanntaekkarn 94 
                 +F+ ++s ++p++++++ k+a++++ +p+   t+eGh+++   ++s+++n+ LS++RA+aV++ l n +g+ p+r++++gyG  rpi+ n+tae+ka n
  EGE23918.1 331 FFDYDKSIIKPQYREEVAKVAAQMReFPNATATIEGHASRdsaRSSARYNQRLSEARANAVKSMLSNeFGIAPNRLNAVGYGFDRPIAPNTTAEGKAMN 429
                 7************************9999********777333666666***********************************************999 PP

                 . CS
        OmpA  95 r 95 
                 r
  EGE23918.1 430 R 430
                 7 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   1.5   4.7e-12   2.1e-08       2     158 ..       7     219 ..       6     239 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 4.7e-12
   OMP_b-brl   2 allllaalsaaaaa.assfggfyvg...gglglskvkvdgvgsds.............................gfgfgvgagyefnd..nvgveggls 65 
                 al+++aa++a+ aa  ++++g+ v    +g+    ++ d+ ++d+                                 g+  g e+++   + ve+g+s
  EGE23918.1   7 ALAVIAAVAAPVAApVAAQAGVTVSpllLGYH---YT-DEAHNDQrkilrtgkkleldatnapapanggvaldsELWTGAAIGIELTPstQFQVEYGIS 101
                 67888888887555445568999997445553...44.3333333344555555666666667766666666534444677777777644699999999 PP

   OMP_b-brl  66 ysgdkdysgs.gktdikinllsvpvn..agya....fnlsdsvlpyggaGlgytkvevdvsgng....................asdsdtdfglglgaG 137
                   ++k+  +s     ++ ++ ++++n  +g      +n  ++++py+++G g++k +v+  + +                    +   ++d+  +lg+G
  EGE23918.1 102 NRDAKSSDKSaH--RFDAEQETISGNflIGTEqfsgYNPTNKFKPYVLVGAGQSKIKVNAIDGYtaevangqniakdqavkagqEVAESKDTIGNLGLG 198
                 877776666552..3344444444442233324433666667**********99999997777789999999***********999999999******* PP

   OMP_b-brl 138 veyaladnwslkaeYrytdlk 158
                 ++y ++d ++l++e r ++ +
  EGE23918.1 199 ARYLVNDALALRGEARAIHNF 219
                 **************9986443 PP

>> TSP_3  Thrombospondin type 3 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.1   4.2e-07    0.0019      15      32 ..     287     304 ..     286     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.2e-07
       TSP_3  15 DfDnDgvqddlDNCprna 32 
                 D D+Dgv+d lD Cp ++
  EGE23918.1 287 DSDGDGVPDHLDACPGTP 304
                 99*************887 PP

>> OprF  OprF membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0024        11      52     122 ..      79     156 ..      72     166 .. 0.66
   2 !   11.2   0.2   5.2e-05      0.23     126     182 ..     182     238 ..     160     240 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0024
                 EEEEEEEEESSSSEEEEEEEEEEE.---------......----EEEEEEEEEEEE-S-SSSEEEEEEEEEEEEEEEE CS
        OprF  52 lyGasiGyfltddvelnlsydevn.dvrstdetg......skkvkGdktsldalyhfgtaGdalrpyveaGlahqsit 122
                   Ga+iG  lt   ++++ y+  n d++s+d+++      ++ + G+    + ++   ++ ++++pyv  G ++ +i+
  EGE23918.1  79 WTGAAIGIELTPSTQFQVEYGISNrDAKSSDKSAhrfdaeQETISGNFLIGTEQFSGYNPTNKFKPYVLVGAGQSKIK 156
                 47999***************9776255655554411111033455555444555555578899*****9998877765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5.2e-05
                 SS-EEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEE------EEEEEEEEEEEEXX CS
        OprF 126 dgssGrdqstlanvGaGvkyyftenlyaragveadykldkgdteyaalvGlGvnfGG 182
                  ++    + t+ n G G++y + + l  r    a +++d++ +e  al Gl v +GG
  EGE23918.1 182 GQEVAESKDTIGNLGLGARYLVNDALALRGEARAIHNFDNKWWEGLALAGLEVTLGG 238
                 333456788***********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3030.07
//
Query:       EGE23919.1  [L=249]
Description: pyridoxine 5'-phosphate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-96  322.2   2.4    1.5e-96  322.1   2.4    1.0  1  PdxJ             Pyridoxal phosphate biosynthesis protein Pdx
  ------ inclusion threshold ------
       0.03   13.8   0.2      0.097   12.1   0.1    1.9  2  AP_endonuc_2     Xylose isomerase-like TIM barrel
      0.037   13.9   0.0       0.09   12.6   0.0    1.6  1  Peptidase_C25_C  Peptidase family C25, C terminal ig-like dom
      0.048   13.1   1.3          1    8.7   1.1    2.6  1  Ribul_P_3_epim   Ribulose-phosphate 3 epimerase family
      0.048   13.4   0.1      0.082   12.7   0.1    1.5  1  QRPTase_C        Quinolinate phosphoribosyl transferase, C-te
      0.052   12.9   0.8       0.19   11.0   0.7    2.0  1  BKACE            beta-keto acid cleavage enzyme
      0.057   13.3   0.0       0.14   12.1   0.0    1.6  2  Polysacc_deac_1  Polysaccharide deacetylase
      0.062   13.5   1.6       0.37   11.0   0.0    2.2  2  FliJ             Flagellar FliJ protein
       0.16   11.4   4.3       0.15   11.5   1.9    2.1  2  CutC             CutC family


Domain annotation for each model (and alignments):
>> PdxJ  Pyridoxal phosphate biosynthesis protein PdxJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.1   2.4  7.5e-100   1.5e-96       2     232 ..       6     239 ..       5     241 .. 0.96

  Alignments for each domain:
  == domain 1  score: 322.1 bits;  conditional E-value: 7.5e-100
                 EEEE-HHHHHHHHCCSSS-S-HHHHHHHHHCCT.SEEEEE--TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE--SCCCCSTT CS
        PdxJ   2 LgVnidhvAtlRnarggnePdvveaaelaeeaGAdgitvhlreDrRhiqdeDveelkelvktelnlEmalteemleialelkpeqvtLVPekreeltte 100
                 LgVnidh+AtlRnarg+ +P +++ a ++e+aGA+git+hlreDrRhiqdeDv+el   ++t++nlEma+t+eml+ial+++p++v+LVPekr+eltte
  EGE23919.1   6 LGVNIDHIATLRNARGVGYPCPIKGALICEQAGASGITLHLREDRRHIQDEDVYELIGQLTTRMNLEMAVTDEMLNIALKVRPAWVCLVPEKRQELTTE 104
                 9************************************************************************************************** PP

                 SSB-TGGCHCCHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHCT-SEEEEETHHHHHHC..CHHHH..HHHHHHHHHHHHHHH.HTT-EEEEETT--TT CS
        PdxJ 101 gGldvakeeeklkevikelkeagirvslFidpdkeqieaaaelgadvvELhtgaYaeaa..eeeer..eeelerlkeaaklak.elgLevnaGHgLnye 194
                 gGld+ ++ ++++++i++l++a+i+vslFidpd++qi+aa +lgad++ELhtgaYa+a+  + +++  ++el+r+++a+++a+ +  L +naGHgL+ +
  EGE23919.1 105 GGLDI-ANLSNIQAFIHSLQQADIKVSLFIDPDPHQIDAAIALGADAIELHTGAYAQATlqN-NQKlvDKELDRIQKAVAMAQkKSSLLINAGHGLTRD 201
                 *****.7999************************************************9542.332359*********999982569************ PP

                 TCHHHHTSTTEEEEEE-HHHHHHHHHH-HHHHHHHHHH CS
        PdxJ 195 nvkaiakipeieelnIGhaliaealfvGleeavremke 232
                 nv+aia+i++i+elnIGhali++a+f+Gl++av++mk 
  EGE23919.1 202 NVAAIAQIDGIHELNIGHALISDAIFMGLDNAVKAMKM 239
                 ************************************96 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.46   9.1e+02       4      44 ..      34      73 ..      32      81 .. 0.72
   2 ?   12.1   0.1   4.9e-05     0.097      74     123 ..     138     187 ..      99     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.46
                  HHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEE CS
  AP_endonuc_2  4 aaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglri 44
                  +++aG+ g+ l++r+++   ++ ++  + + ++  + +l++
    EGE23919.1 34 CEQAGASGITLHLREDRRHIQD-EDVYELIGQLTTRMNLEM 73
                  6788999999999998888763.555666666666666665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.9e-05
                   HHHHHHHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHH CS
  AP_endonuc_2  74 raielaaaLGapllvlhpGtagagpkgseeeawerlaeslneladyaeke 123
                   ++i++a aLGa+ + lh+G + +   ++ +  +++  +++++++++a+k+
    EGE23919.1 138 HQIDAAIALGADAIELHTGAYAQATLQNNQKLVDKELDRIQKAVAMAQKK 187
                   589****************99999999999****************9754 PP

>> Peptidase_C25_C  Peptidase family C25, C terminal ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.5e-05      0.09       9      43 ..     141     174 ..     138     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
                      -SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE CS
  Peptidase_C25_C   9 PasiplgtnsievscdvdgalvalSannkllGsai 43 
                      +a i lg+  ie +++ ++a ++l +n kl+++++
       EGE23919.1 141 DAAIALGADAIELHTG-AYAQATLQNNQKLVDKEL 174
                      899*************.**************9975 PP

>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.1   0.00052         1     142     197 ..     166     221 ..      71     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00052
                     S----CCHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHH.HT--EEEESHHH CS
  Ribul_P_3_epim 142 GQkFipevlekikkvrklidekeldlkievDGGvkldnieqiae.agadvlVagsav 197
                      Qk +++ l++i+k+ +++++ + +l i +  G++ dn+++ia+ +g+  l +g a+
      EGE23919.1 166 NQKLVDKELDRIQKAVAMAQK-KSSLLINAGHGLTRDNVAAIAQiDGIHELNIGHAL 221
                     69999**********999987.8999**************99874677777777665 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   4.1e-05     0.082      90     155 ..     137     218 ..     102     231 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHHHT-SEEEEES-................-HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCT.T-SEEEEC CS
   QRPTase_C  90 leeleevleaeadiimLDnf................sveelkkaveelkeknkrvlievSGgvtlenveeyaks.gvdvisvg 155
                   +++++++ +ad i L +                 + + ++kav  + +k+ ++li++  g+t +nv+++a++ g+  + +g
  EGE23919.1 137 PHQIDAAIALGADAIELHTGayaqatlqnnqklvdkELDRIQKAVA-MAQKKSSLLINAGHGLTRDNVAAIAQIdGIHELNIG 218
                 4688999999999999999899999999999988877899999999.5566668******************97246666666 PP

>> BKACE  beta-keto acid cleavage enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7   9.7e-05      0.19      32      67 ..      31      64 ..      28     209 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.7e-05
                HHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHH CS
       BKACE 32 aveaaeaGAaivHlHaRdpedgrpsldpelyrevla 67
                a+ + +aGA+ + lH R+  d r+ +d ++y+ + +
  EGE23919.1 31 ALICEQAGASGITLHLRE--DRRHIQDEDVYELIGQ 64
                677**************9..5788888888765443 PP

>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.9   3.9e+03      78     102 ..      68      92 ..      65     103 .. 0.82
   2 ?   12.1   0.0   6.8e-05      0.14      18     117 ..     112     208 ..      93     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.9
                      HHHHHHHHHHHHHHHHHS----EEE CS
  Polysacc_deac_1  78 evrreierakdalrkalgreprlfr 102
                      +++ e++ ++++l+ al+ +p +++
       EGE23919.1  68 RMNLEMAVTDEMLNIALKVRPAWVC 92 
                      6777888899999999999998876 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.8e-05
                      CSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTT.EEEEE--SS--EGGGSHHH.HHHHHHHHHHHHHHHHHS----EEE-GGGEE- CS
  Polysacc_deac_1  18 rdntteilpvLkkykvkatffvigglvedypdevremaasG.veignHtinhsnlkrlsee.evrreierakdalrkalgreprlfryPygsas 109
                       +n ++++  L++ ++k  +f+ +      p ++ +  a G   i+ Ht  + + + + ++  v++e++r ++a+  a ++ + l+++  g   
       EGE23919.1 112 LSNIQAFIHSLQQADIKVSLFIDP-----DPHQIDAAIALGaDAIELHTGAYAQATLQNNQkLVDKELDRIQKAVAMAQKKSSLLINAGHGLTR 200
                      677788888888888888888887.....689*********************997777775899***************************99 PP

                      HHHHHHHH CS
  Polysacc_deac_1 110 atvlevar 117
                      ++v ++a+
       EGE23919.1 201 DNVAAIAQ 208
                      99988776 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.37      34      60 ..      98     125 ..      95     127 .. 0.80
   2 ?    1.1   0.4      0.21   4.2e+02      47      73 ..     160     186 ..     139     191 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
        FliJ  34 qlsgea.qglsaaelrnyqafisaldea 60 
                 +++ ++  gl++a+l n+qafi++l++a
  EGE23919.1  98 RQELTTeGGLDIANLSNIQAFIHSLQQA 125
                 33444433******************97 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.21
        FliJ  47 lrnyqafisaldeaiaqqkqelaqaek 73 
                 + ++q+  + +d++++++++++a a+k
  EGE23919.1 160 QATLQNNQKLVDKELDRIQKAVAMAQK 186
                 334444444455555555555555554 PP

>> CutC  CutC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.57   1.1e+03     111     136 ..      36      61 ..      31      86 .. 0.49
   2 ?   11.5   1.9   7.6e-05      0.15      95     197 ..     102     216 ..      98     220 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.57
        CutC 111 aaegLgvtfHrAfDvvadpeealeql 136
                 +a++ g+t+H   D+ + + e + +l
  EGE23919.1  36 QAGASGITLHLREDRRHIQDEDVYEL 61 
                 44444444444444333333333222 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.6e-05
        CutC  95 tadgeiDlkaleklieaaegLgvt.fHrAfDvvadpeealeqlielgverv.LtsGqkssal.........egleklaeLveqaaerieim..agaGvn 180
                 t++g +D+  l ++ +  ++L+ + +   +   +dp + +++ i+lg + + L  G  ++a+         + l+++++ v+ a+++ +++  ag G++
  EGE23919.1 102 TTEGGLDIANLSNIQAFIHSLQQAdIKVSLFIDPDP-HQIDAAIALGADAIeLHTGAYAQATlqnnqklvdKELDRIQKAVAMAQKKSSLLinAGHGLT 199
                 566666666666666666666543122222222333.457888888887774444443333211111111135678889999888876655127889** PP

        CutC 181 aenvaelakktGvaevH 197
                  +nva +a+  G++e+ 
  EGE23919.1 200 RDNVAAIAQIDGIHELN 216
                 *************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1700.43
//
Query:       EGE23920.1  [L=269]
Description: DNA repair protein RecO [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-05   24.2   0.4    5.9e-05   22.9   0.4    1.7  1  RecO_C    Recombination protein O C terminal
    0.00051   20.0   0.0      0.001   19.0   0.0    1.5  1  RecO_N    Recombination protein O N terminal


Domain annotation for each model (and alignments):
>> RecO_C  Recombination protein O C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.4   6.6e-09   5.9e-05       8     107 ..      98     208 ..      93     259 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 6.6e-09
                 HHHHHHHHHHHHHS-SSS--HHHHHHH......HHHHHHH.....HHSS-HHHHHHHHHHHHHHHTTS----SB-TTT--BS--EE-TTT.....SSEE CS
      RecO_C   8 aaasylaElldrllpeeepnpeLFdll......latLdaL.....deasdaalallvfelrlLallGyapdldsCaacgekialaafspswggllcsec 95 
                 +a++y++E+ld+ll  e p p+L + +      l++Ld+L     d+ +   l l++fe +l ++lG+  d++ + +    +a+a++ +  +      +
  EGE23920.1  98 YALLYMNEILDKLLATESPCPKLWQVYhtnmtkLHALDRLslmavDKMQAMKLYLRSFERGLFSELGVMMDFCVDGHGVPINADAMYCFIPQMGFMLAH 196
                 899**********************99444444456666677765555566666666***************999887666666666555444555555 PP

                 -TTT-SS----H CS
      RecO_C  96 aakapagrplsp 107
                  ++ + ++++  
  EGE23920.1 197 LVRTQIDPKIRF 208
                 555555555555 PP

>> RecO_N  Recombination protein O N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.1e-07     0.001       1      36 [.       1      36 [.       1      41 [. 0.90

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.1e-07
                X-EEEEEEEEEEEEEETTSEEEEEEEETT.EEEEEE CS
      RecO_N  1 MslvkteaiVLksrkygEsdlivtlfTrehGkvsal 36
                M+ +  +++ L++r+y+E+++i ++f+ e+G v ++
  EGE23920.1  1 MRATALNGYLLHQRPYQEKRAIYQFFSYEKGVVHGI 36
                6666789************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1933.33
//
Query:       EGE23921.1  [L=331]
Description: GTP-binding protein Era [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-26   91.7   0.1    6.1e-26   90.7   0.1    1.5  1  MMR_HSR1        50S ribosome-binding GTPase
      2e-19   69.7   0.1    2.9e-19   69.1   0.1    1.2  1  FeoB_N          Ferrous iron transport protein B
    7.8e-17   60.9   0.2    1.6e-16   59.8   0.2    1.6  1  KH_2            KH domain
    8.2e-10   39.0   0.7     0.0012   18.9   0.0    2.3  2  Dynamin_N       Dynamin family
    2.1e-09   37.2   0.3    7.7e-07   28.8   0.3    2.5  1  GTP_EFTU        Elongation factor Tu GTP binding domain
    1.2e-08   35.0   0.5    0.00027   20.9   0.0    2.3  2  RsgA_GTPase     RsgA GTPase
    2.6e-08   33.4   0.2    4.4e-08   32.7   0.2    1.4  1  AIG1            AIG1 family
    2.1e-07   30.8   0.0      7e-07   29.1   0.0    1.8  1  PduV-EutP       Ethanolamine utilisation - propanediol utilis
    3.5e-05   23.7   0.2    0.00076   19.3   0.1    2.1  2  ATP_bind_1      Conserved hypothetical ATP binding protein
    0.00076   19.5   0.1     0.0018   18.3   0.1    1.7  1  MMR_HSR1_Xtn    C-terminal region of MMR_HSR1 domain
     0.0013   19.0   0.3     0.0096   16.2   0.3    2.1  1  AAA_22          AAA domain
     0.0015   19.0   0.2      0.037   14.4   0.2    2.5  1  AAA_16          AAA ATPase domain
     0.0021   17.7   2.0      0.079   12.5   0.5    2.3  2  cobW            CobW/HypB/UreG, nucleotide-binding domain
     0.0028   16.7   0.1          2    7.3   0.0    2.2  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
     0.0098   16.1   0.1      0.059   13.6   0.1    2.2  1  Roc             Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.011   15.2   0.1      0.018   14.5   0.1    1.4  1  SRPRB           Signal recognition particle receptor beta sub
       0.02   14.8   0.2        1.9    8.3   0.0    2.4  2  ATPase_2        ATPase domain predominantly from Archaea
      0.027   13.7   0.0      0.044   13.0   0.0    1.3  1  GBP             Guanylate-binding protein, N-terminal domain
       0.03   14.9   0.0      0.055   14.0   0.0    1.4  1  SUA5            Putative GTP-binding controlling metal-bindin
      0.036   13.7   0.0       0.14   11.7   0.0    1.9  1  Ras             Ras family
      0.043   13.6   0.4         11    5.9   0.0    2.6  2  NOG1            Nucleolar GTP-binding protein 1 (NOG1)
       0.07   13.6   0.0       0.18   12.3   0.0    1.8  1  ABC_tran        ABC transporter
      0.071   13.0   0.0       0.84    9.5   0.0    2.2  2  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.072   12.3   0.7        0.6    9.3   0.0    2.3  2  Septin          Septin
       0.13   12.7   0.0       0.25   11.7   0.0    1.5  1  RNA_helicase    RNA helicase
       0.14   11.9   0.0        1.1    9.1   0.0    2.2  2  AAA_29          P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.1   8.9e-29   6.1e-26       2     114 .]      34     148 ..      33     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 8.9e-29
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS....HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie....gaseekglgkaflaleeadlillvvdaseeklkplde 95 
                 vaivGrpNvGKStL+n ++g+  +i+s+kp+tTr+ ++g ++ ++++i++vDtpG i+    +a +e++ + a+ al ++d++l+vvd    +++++d 
  EGE23921.1  34 VAIVGRPNVGKSTLMNHMLGQkLSITSRKPQTTRHRIHGILTDEDRQIVFVDTPG-IHskevRAINERMNKAAISALADVDVVLFVVD-G-IQWREDDL 129
                 8*******************9569******************888**********.65344555556688888888889*********.5.45777665 PP

                 HHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  96 eleelleeakkplilvlnk 114
                    e l+ ++ p+ilv+nk
  EGE23921.1 130 LTLEKLSVTNLPVILVINK 148
                 55555566999******98 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   4.2e-22   2.9e-19       3     154 ..      34     190 ..      33     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 4.2e-22
                 EEEEESTTSSHHHHHHHHHTTSEEEEE.STTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH.CTSSSEEEEEEEGGGHHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgN.wpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardfll.eeepdvvvnvvdatnlernLyLtl 99 
                 va+vG pnvGk+tl+n++ g+k ++    p +t  + +g l+ +++++ +vD PGi+s +  +++e++ +  +    ++dvv+ vvd  + + + +Ltl
  EGE23921.1  34 VAIVGRPNVGKSTLMNHMLGQKLSITSrKPQTTRHRIHGILTDEDRQIVFVDTPGIHSKEVRAINERMNKAAISaLADVDVVLFVVDGIQWREDDLLTL 132
                 89********************999761688888999*****999**************************9984578************999888888 PP

                 HHHH.TTSSEEEEEETHHHHHHTTEEE-.HHHHHHHHT.S-EEEEBTTTTBTHHHHHH CS
      FeoB_N 100 qlle.lgvpvvlalnmideaekkgieid.lkkLsekLg.vpvvktsakkkegieellk 154
                 + l  +++pv+l++n+ d++++k   +  ++++se+++  +++++sa +++++++l++
  EGE23921.1 133 EKLSvTNLPVILVINKADTVKDKSKLLPvIESFSESFDfADIIPVSALRRHNLDRLQS 190
                 75551679************998877752799*****9458*************9986 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.2   2.4e-19   1.6e-16      15      77 ..     260     319 ..     232     320 .. 0.82

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 2.4e-19
                 EEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEE.EETTTG CS
        KH_2  15 vskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklniv.kVkkpe 77 
                 ++   I    +++i+v+r++q+ i+IG +G++ik++g ++rkd+e+l+++k+ l ++ kVk+ +
  EGE23921.1 260 KAVTFI----DATIFVERAGQKSIIIGDKGAKIKQVGIDARKDMEVLFDRKIMLTLWvKVKRGW 319
                 455567....9***************************************************99 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.7e-06    0.0012       1      34 [.      34      67 ..      34      70 .. 0.93
   2 !   18.6   0.1   2.3e-06    0.0016      99     166 ..      77     148 ..      67     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.7e-06
                EEEEEBTTTTHHHHHHHHHTS--S---SSS---S CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrr 34
                +a+vG  + GKS+++n++lg+++  ++  p T r
  EGE23921.1 34 VAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTR 67
                79**************************998875 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.3e-06
                 TS-SEEEEE---B-SSSGTTS.....HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE CS
   Dynamin_N  99 lvkgltlvDlPGldsvnkrdq.....elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvlt 166
                  + ++++vD+PG++s ++r       + + +++ + d++l+v++  + + + + l l+++   +   ++v+++
  EGE23921.1  77 EDRQIVFVDTPGIHSKEVRAInermnKAAISALADVDVVLFVVDGIQ-WREDDLLTLEKLSVTNLPVILVINK 148
                 56789**********999988888888888888999********998.8888999988776666655555554 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.3   1.1e-09   7.7e-07       6     193 ..      34     197 ..      31     198 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.1e-09
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESS.........SGGGHHHHHHHHHT-S CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPG.........HvdFskevirglrvlD 95 
                 ++i+g  + GK+TL+ ++l ++  i++++ +++ +r+   l                     ++++i ++DtPG          +  +k  i +l+ +D
  EGE23921.1  34 VAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGILT-------------------DEDRQIVFVDTPGihskevraiNERMNKAAISALADVD 113
                 567777778888888888876666666444443333333333...................45666666666664222111112556677778899999 PP

                 EEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST..HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHS CS
    GTP_EFTU  96 gavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl..kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvell 192
                 ++++vvd  +  e    ++ + ++  ++p+i++iNK+D +  k++l  ++e  ++++               ++  ++++Sal+  +++ l +++ e+l
  EGE23921.1 114 VVLFVVDGIQWREDDLLTL-EKLSVTNLPVILVINKADTVkdKSKLLPVIESFSESF---------------DFADIIPVSALRRHNLDRLQSVIGEYL 196
                 9999998776666665554.445567899***********87788888889998888...............366799999999999999999998888 PP

                 H CS
    GTP_EFTU 193 p 193
                 p
  EGE23921.1 197 P 197
                 7 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.9e-07   0.00027      97     165 ..      29      93 ..      15      95 .. 0.77
   2 !   12.3   0.1   0.00017      0.12       3      97 ..      99     192 ..      97     197 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.9e-07
                  CTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SSSS-- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGfreld 165
                  ++  ++++vG   vGKStL+n++l++   k + +s+k ++ +h   +  l + +++ + +DtPG+++ +
   EGE23921.1  29 FRAGFVAIVGRPNVGKSTLMNHMLGQ---KLSITSRKPQTTRHR-IHGILTDEDRQIVFVDTPGIHSKE 93 
                  5667899******************9...455556665555553.344566677788999*****9865 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00017
                  --S-EETTTTEES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHH.HHHTT.SEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase   3 eRknelvrpkvaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkee.lealg.yevllvsaktkegleelkell 97 
                  eR n+   ++ a vd +l vv    +  + +ll   L  +  +++++++v+nK+D ++++++l  + e   e+++  +++ vsa ++++l++l++++
   EGE23921.1  99 ERMNKAAISALADVDVVLFVVDGI-QWREDDLL--TLEKLSVTNLPVILVINKADTVKDKSKLLPVIESfSESFDfADIIPVSALRRHNLDRLQSVI 192
                  566666666677777766555433.22233333..356678899****************9655544440455553478889999999999998876 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.2   6.4e-11   4.4e-08       5     108 ..      36     136 ..      33     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 6.4e-11
                 EESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCC..HHCHHHHHHHHHHHCTT-ESEEEEEEETTB-SHHHH CS
        AIG1   5 lvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvs..adkiskeivrclllseegihalllvlslgrfteede 101
                 +vG+  +GkS+  N +lg+k   ++ ++ + t++  +   t ++++i+ +DTPg+ + +v+  +++++k  +     +   ++++l+v++  +  e+d 
  EGE23921.1  36 IVGRPNVGKSTLMNHMLGQKLSITS-RKPQTTRHRIHGILTDEDRQIVFVDTPGIHSKEVRaiNERMNKAAI----SALADVDVVLFVVDGIQWREDDL 129
                 8*******************96666.3555566666666699*************99888522566665544....455568******99999998888 PP

                 HHHHHHH CS
        AIG1 102 kalktlk 108
                  +l++l 
  EGE23921.1 130 LTLEKLS 136
                 8888775 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0     1e-09     7e-07       4     141 ..      34     192 ..      32     194 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1e-09
   PduV-EutP   4 illiGkvgsGKttLtqalkgeelk..Ykktqaief.........sdev..iDtPGeyle.....nrklysalivtsaeadvialvqdate..eesvfpp 82 
                 + ++G+ ++GK tL++++ g++l+   +k q++ +           ++  +DtPG + +     n+++ +a i++ a++dv+ +v+d  +  e+ +++ 
  EGE23921.1  34 VAIVGRPNVGKSTLMNHMLGQKLSitSRKPQTTRHrihgiltdeDRQIvfVDTPGIHSKevraiNERMNKAAISALADVDVVLFVVDGIQwrEDDLLTL 132
                 5689*************9987765116788987652222222211222349****8854222235678888889999*********9876326789999 PP

   PduV-EutP  83 gfasvfnkeviGiitkidlaedeenie.aveelLksaGaekifevsavekegieellkyl 141
                 +  sv n +vi +i k+d+++d++++  + e++ +s   + i+ vsa++++++++l++++
  EGE23921.1 133 EKLSVTNLPVILVINKADTVKDKSKLLpVIESFSESFDFADIIPVSALRRHNLDRLQSVI 192
                 999*****************999987615566667889******************9876 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.16   1.1e+02       1      16 [.      36      51 ..      36      66 .. 0.86
   2 !   19.3   0.1   1.1e-06   0.00076      85     213 ..      73     197 ..      63     220 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.16
  ATP_bind_1  1 vvGpaGsGKttfvgal 16
                +vG + +GK+t+++ +
  EGE23921.1 36 IVGRPNVGKSTLMNHM 51
                799**********987 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.1e-06
  ATP_bind_1  85 elekeeddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsq.rltdptkfisgllsalsamlrlelPhvvvlnkfDllkek..lekeleff 180
                  l +e+++ + +DtPG      hs++ + i e++++  a+ ++  vD+  ++ d +++ +  l++l  +  ++lP + v+nk+D +k+k  l   +e f
  EGE23921.1  73 ILTDEDRQIVFVDTPG-----IHSKEVRAINERMNK-AAISALADVDVVlFVVDGIQWREDDLLTLEKLSVTNLPVILVINKADTVKDKskLLPVIESF 165
                 566667899999****.....899****9*****95.78888888886438899*******************************99665444455555 PP

  ATP_bind_1 181 edvealslllekeeekykklaeaiaelleefal 213
                 ++  ++  ++      ++++   + +++ e+  
  EGE23921.1 166 SESFDFADIIPVS-ALRRHNLDRLQSVIGEYLP 197
                 5444444443333.4445555556666665555 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   2.6e-06    0.0018      28     104 ..     100     196 ..      83     198 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.6e-06
  MMR_HSR1_Xtn  28 kihnaevliredvt............vDdlidviegnrvYipclyvlNKiDlislee..ldelare......pnsvviSaekelnldeLkekiweeL 104
                   ++++a +    dv+             Ddl    + + + +p+++v+NK+D++++++  l  +++        +++++Sa ++ nld+L++ i e+L
    EGE23921.1 100 RMNKAAISALADVDvvlfvvdgiqwrEDDLLTLEKLSVTNLPVILVINKADTVKDKSklLPVIESFsesfdfADIIPVSALRRHNLDRLQSVIGEYL 196
                   55555555555555556666666665788877767788999***********876542233333324557777*****************9997776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   1.4e-05    0.0096       4      49 ..      30      88 ..      26     151 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.4e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlps 49
                +ag+++++G + +GK+tl++ +l q+    + +              e++++vfv+ p+
  EGE23921.1 30 RAGFVAIVGRPNVGKSTLMNHMLGQKLSITSRKPqttrhrihgiltdEDRQIVFVDTPG 88
                799********************998432222224444444444443333333444332 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   5.4e-05     0.037      25     154 ..      32     132 ..      12     146 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.4e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllell 123
                 + v ++G + vGKs+l+++ l    ++    l+ + ++           q+  r + +  +l++++ + +            ++p ++++e ++++e +
  EGE23921.1  32 GFVAIVGRPNVGKSTLMNHML---GQK----LSITSRKP----------QTT-R-HRIHGILTDEDRQIVFV----------DTPGIHSKEVRAINERM 101
                 789999999999999999888...344....44444444..........222.5.77777777733322222..........33445556668999999 PP

      AAA_16 124 krll.allsrderplvlvlDdlqwadeaslql 154
                 ++++ + l+  +  +++v+D +qw +++ l+l
  EGE23921.1 102 NKAAiSALADVDV-VLFVVDGIQWREDDLLTL 132
                 9999766666555.**********99876665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.042        29       4      22 ..      35      54 ..      33      66 .. 0.82
   2 !   12.5   0.5   0.00011     0.079      79     158 ..      76     158 ..      61     174 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.042
                EEEESTTCCHHHHHHHHH.C CS
        cobW  4 vltGflGsGKTtLlnhll.e 22
                 ++G +  GK+tL+nh+l +
  EGE23921.1 35 AIVGRPNVGKSTLMNHMLgQ 54
                68899999*********943 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00011
                 HHTT-SEEEEEECTTTTHHHHHTT....SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC... CS
        cobW  79 reerldviliEttGlaePapvaft....eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee.al 158
                 +e + +++++ t G+ +    a++    +  +++ + +d+v++vvD+ ++ +e++  + +  +  +   +lv+nK+D+++++ +l
  EGE23921.1  76 DE-DRQIVFVDTPGIHSKEVRAINermnKAAISALADVDVVLFVVDGIQW-REDDLLTLEKLSVTNLPVILVINKADTVKDKsKL 158
                 44.678999999997665555444466688899999***********887.344444444444455566899********99444 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0     0.003         2      26      49 ..      28      51 ..      22      64 .. 0.82
   2 !    7.3   0.0     0.003       2.1     139     235 ..     106     202 ..      63     231 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.003
                -S-SEEEEEEE-TTSSHHHHHHHH CS
        MeaB 26 aGraqvvGltGvPGaGkstlveal 49
                + ra  v + G P +Gkstl++++
  EGE23921.1 28 SFRAGFVAIVGRPNVGKSTLMNHM 51
                5588999*************9875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.003
                 HHTT-SEEEEEEESST....TTTTTT.--CCCHHH-SEEEEE---HHHHHHHHHHHHHHHHHCSTT.BTTB--EEEEEBCCCTBSHHHHHHHHHHHHHH CS
        MeaB 139 vaevvdtfvvlllpea....GDelqg.ikkGileiaDiivvnkaDkkeaekaarelraaleleeek.ekeWrpkvlktsavegeGidelvdaieehrev 231
                 + +++d+ vvl + ++     D+l +  k  + ++  i+v+nkaD+ + +      ++ l + e++ e+   + ++ +sa++ + +d+l + i e+  +
  EGE23921.1 106 ISALADVDVVLFVVDGiqwrEDDLLTlEKLSVTNLPVILVINKADTVKDK------SKLLPVIESFsESFDFADIIPVSALRRHNLDRLQSVIGEYLPI 198
                 5566666666655443222256655515779999999*******964322......2233333333144457889999999999999999999888765 PP

                 HHHT CS
        MeaB 232 lkkt 235
                   + 
  EGE23921.1 199 RPAI 202
                 4444 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   8.6e-05     0.059       2     119 ..      34     150 ..      34     151 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.6e-05
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-S..GGCTTTT-HHHHCTSCEEEEEEE.....GHHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaG..qerfrslhplylreaalailvyd.....srsse 93 
                 v +vG  +vGK++l+++++ +k s ++++         +   i+g+ +d++    ++ + Dt G   +++r++++   ++a  a++ +d      +  +
  EGE23921.1  34 VAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRH---R---IHGILTDED---RQIVFVDTPGihSKEVRAINERMNKAAISALADVDvvlfvVDGIQ 123
                 679****************9999766544433322...2...233333332...245567887744455666666655555555555553222111223 PP

                 CHHHHHHHHHHH.CSSS-EEEEEE-TT CS
         Roc  94 nlkeWlkelkkv.agkspvilvgnkiD 119
                   ++ l  l+k  +++ pvilv+nk+D
  EGE23921.1 124 WREDDLLTLEKLsVTNLPVILVINKAD 150
                 334445566665245668888888887 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.6e-05     0.018       6      84 ..      34     120 ..      30     158 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
                 EEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG.......GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEE......EEEEEE CS
       SRPRB   6 vllvGlsdsGKTslftrLttdsvkktvtSqessaalkv....ksekgskltliDfPGheklrqklleklkaksslkg......lvfvvD 84 
                 v +vG  + GK +l+++++ ++   + tS +++++ +      ++++ ++ ++D PG ++   + +++ ++k+ + +      ++fvvD
  EGE23921.1  34 VAIVGRPNVGKSTLMNHMLGQK--LSITSRKPQTTRHRihgiLTDEDRQIVFVDTPGIHSKEVRAINERMNKAAISAladvdvVLFVVD 120
                 779*************999875..4566776666654435557899***********77666666665555555444111111678888 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0028       1.9      22      46 ..      33      57 ..      26     111 .. 0.87
   2 ?    4.4   0.2     0.044        31      44     139 ..     166     297 ..     125     310 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0028
    ATPase_2 22 iyfiYGpegsGKtaLlkeiienled 46
                ++ i G+ ++GK++L+++++ ++++
  EGE23921.1 33 FVAIVGRPNVGKSTLMNHMLGQKLS 57
                67799*************9988766 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.044
    ATPase_2  44 ledkdk.yviyyialreesiskldefie...............eeeekkklekal...................giavpkaeleeilk....eksklvf 103
                 +e+ d+ ++i ++alr++++++l++ i+               + +++++l+  +                   +i++ k+e     k     k +++ 
  EGE23921.1 166 SESFDFaDIIPVSALRRHNLDRLQSVIGeylpirpaifdaeqiTDRSERFLASEIirekimrisgdevpydltvQIDTFKDEP--AHKdpetGKWRKAV 262
                 45555545666777777777777777766777777666655554444444444446777777777777776655444444333..22233223333433 PP

    ATPase_2 104 kaielllekikkkgkkiiiiiDelqklidlglngae 139
                   i ++   +++ g+k iii D  +k++++g++  +
  EGE23921.1 263 TFI-DATIFVERAGQKSIIIGDKGAKIKQVGIDARK 297
                 333.44567999999**************9999554 PP

>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.4e-05     0.044      24     132 ..      34     141 ..      24     169 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.4e-05
                 EEEEEBTTSSHHHHHHHHHTBSSSSESSS..CSSST-SSEEEESCE-SSSTCEEEEEEEEECBTTTTTS...SHHHHHHHHHHHHHH-SEEEEEEESSS CS
         GBP  24 vaivGlyRkGksfLlnklarkkkGFslrs..tvesetkGiliWcephpkkekvalvLlDteGlgDveks...dvkddatiFaLavllssvfvYnssqti 117
                 vaivG    Gks L+n+++++k   + r   t++   +Gil       + e+  +v +Dt G+   e     +  ++a i aLa +    fv + +q  
  EGE23921.1  34 VAIVGRPNVGKSTLMNHMLGQKLSITSRKpqTTRHRIHGIL-------TDEDRQIVFVDTPGIHSKEVRainERMNKAAISALADVDVVLFVVDGIQWR 125
                 9*******************987766553224445556665.......345567899999999886654111445677777777666666666666543 PP

                 SHHHHHHHHH..HHHHH CS
         GBP 118 qedaleqLql..vtElt 132
                  ed+l  L+   vt+l 
  EGE23921.1 126 -EDDLLTLEKlsVTNLP 141
                 .4444444321256554 PP

>> SUA5  Putative GTP-binding controlling metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     8e-05     0.055      77     133 ..      54     105 ..       3     105 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8e-05
                 EEEEE..E-TT-HHHHHHHHHHHHHHHHHS--SEEEEE---.-STTHHHHHHHHHHHT CS
        SUA5  77 svlslslgsrsdleeaarnLFaaLrelDeegvdlilvegvp.eeglglAvmnRLrkAA 133
                 ++ls+   +++++++  +++   L + D+   ++++v+++  ++++ +A+++R++kAA
  EGE23921.1  54 QKLSI---TSRKPQTTRHRIHGILTDEDR---QIVFVDTPGiHSKEVRAINERMNKAA 105
                 33333...6799****************7...69999966567799***********9 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.14       2     150 ..      34     186 ..      33     195 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETT..SGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHH.H CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAG..qeefkslrelyyrdaegillvyditsresfenvkkwvee.i 97 
                 + +vG  +vGK++l+++   +k + ++ +       ++ i + +++ ++   DT G    e ++++e + + a  +l   d+      + + +w e+ +
  EGE23921.1  34 VAIVGRPNVGKSTLMNHMLGQKLSITSRKPQTTRHRIHGILT-DEDRQIVFVDTPGihSKEVRAINERMNKAAISALADVDVVLFV-VDGI-QWREDdL 129
                 579***************999998777666645566666555.566678889****444577788877777777777655554322.2333.5554314 PP

                 HHHST...TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHH CS
         Ras  98 krvae...envpivLvGnKvDleekravsteegeelakelg.lkfletSAktnenve 150
                  +  +   +n+p++Lv nK+D  +++       e+++++++ +  + +SA  ++n++
  EGE23921.1 130 LTLEKlsvTNLPVILVINKADTVKDKSKLLPVIESFSESFDfADIIPVSALRRHNLD 186
                 4444455689***********988777666677777787776777777887777766 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.025        17       4      22 ..     103     120 ..     100     125 .. 0.88
   2 ?    5.9   0.0     0.016        11      45      58 .]     137     150 ..     126     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.025
        NOG1   4 kqAiaALkhladavlFllD 22 
                 k Ai+AL+ + d+vlF++D
  EGE23921.1 103 KAAISALADV-DVVLFVVD 120
                 6799999998.79*****9 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.016
        NOG1  45 fankpvivvlnKiD 58 
                 + n pvi v+nK+D
  EGE23921.1 137 VTNLPVILVINKAD 150
                 6789********99 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00026      0.18      13      35 ..      33      55 ..      27     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00026
                EEEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagll 35
                 vaivG+   GKStL++ ++g+ 
  EGE23921.1 33 FVAIVGRPNVGKSTLMNHMLGQK 55
                58*****************9985 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0012      0.84       5      33 ..      33      62 ..      29      85 .. 0.68
   2 ?    1.0   0.0      0.51   3.5e+02      95     129 ..      94     127 ..      87     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
  Ploopntkinase3  5 liylvGqPGaGkstlmael.tkgfdrskve 33
                    ++ +vG P  Gkstlm ++  + ++ ++ +
      EGE23921.1 33 FVAIVGRPNVGKSTLMNHMlGQKLSITSRK 62
                    5679************98614445444444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.51
  Ploopntkinase3  95 arlankrfldaaleaGyevtlalldhdqadawrka 129
                      r  n+r+ +aa+ a  +v ++l+  d + +wr+ 
      EGE23921.1  94 VRAINERMNKAAISALADVDVVLFVVDGI-QWRED 127
                     68889****************99987765.68876 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00087       0.6       8      38 ..      35      65 ..      32      95 .. 0.73
   2 ?    0.6   0.1      0.39   2.7e+02     124     156 ..     121     154 ..      96     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00087
                EEEEBTTSSCCCCCCTTSSSS---------- CS
      Septin  8 mvvGesglGkttlintlfetdlieeekleea 38
                 +vG+  +Gk+tl+n ++ ++l  +++ +++
  EGE23921.1 35 AIVGRPNVGKSTLMNHMLGQKLSITSRKPQT 65
                68*****************999876533333 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.39
                 SSSS-HHHHHHHHHHT.TTS-EEEEESSGGGS-H CS
      Septin 124 ghglkpldvelmkkls.ekvnliPviaKaDtltk 156
                 g + ++ d+ ++ kls ++  +i vi KaDt+ +
  EGE23921.1 121 GIQWREDDLLTLEKLSvTNLPVILVINKADTVKD 154
                 555667788889888735678999******9876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00036      0.25       2      23 ..      35      57 ..      34     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00036
  RNA_helicase  2 wlyGpsgeGKStlake.Lakall 23
                   ++G++++GKStl+++ L ++l+
    EGE23921.1 35 AIVGRPNVGKSTLMNHmLGQKLS 57
                  689*************3333333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0016       1.1      22      39 ..      31      48 ..      20      52 .. 0.86
   2 ?   -0.6   0.0       1.6   1.1e+03      12      32 ..     264     285 ..     262     286 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0016
      AAA_29 22 kgatlltGpsGsGKSTll 39
                +g++ ++G+  +GKSTl+
  EGE23921.1 31 AGFVAIVGRPNVGKSTLM 48
                67899************8 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.6
      AAA_29  12 fdghtieidlkg.atlltGpsG 32 
                 f + ti ++++g   +++G+ G
  EGE23921.1 264 FIDATIFVERAGqKSIIIGDKG 285
                 4555666677777778888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 2405.70
//
Query:       EGE23922.1  [L=262]
Description: ribonuclease III [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-32  110.2   0.1    1.1e-31  109.7   0.1    1.2  1  Ribonucleas_3_3  Ribonuclease-III-like
    2.4e-21   76.3   0.1    4.1e-21   75.6   0.1    1.4  1  Ribonuclease_3   Ribonuclease III domain
    9.8e-11   42.2   0.0    1.8e-10   41.3   0.0    1.5  1  dsrm             Double-stranded RNA binding motif
    0.00089   19.5   0.0     0.0018   18.5   0.0    1.6  1  DND1_DSRM        double strand RNA binding domain from DEAD E


Domain annotation for each model (and alignments):
>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.1   2.4e-35   1.1e-31       3     125 ..      47     168 ..      45     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 2.4e-35
  Ribonucleas_3_3   3 elleqaltHkSfangrkghNerLefLGdavLklsvseyllekaek.degeltklraslvseeslaeiAkelgLgkvlrlrkgeeetegsgrekv 95 
                      +ll +altH+S++   k+++erLefLGda+L+ +++++l+ ++ k deg+lt++ra+lv++e+l +iA +l+L+++l l+ ge + +g++r ++
       EGE23922.1  47 SLLCRALTHRSYD--PKKSYERLEFLGDALLSSIITKALFAQYPKhDEGKLTRMRAALVRQETLVQIADHLELSRHLILGVGERKGGGRHRASI 138
                      7999********9..6889******************9987755549*********************************************** PP

  Ribonucleas_3_3  96 ladaleAliGAiyldkgaevaqefveekil 125
                      lada+eAli+A+yld+  +  ++++++ ++
       EGE23922.1 139 LADAVEALIAAVYLDNLNSDGENIIHRMVM 168
                      ***************999988888887665 PP

>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.1   9.2e-25   4.1e-21       1     104 [.      65     154 ..      65     155 .. 0.95

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 9.2e-25
                     HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH..............HHCCSTTCHC..TSHHHHHHH CS
  Ribonuclease_3   1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpprnwlppgyklsddekeddd..adkvladvv 93 
                     erLeflGDa l  +it++lf +yp+ +eg+l+++r++lv++e+l ++a+ l+l ++l+                l+ +e++  +  + ++lad+v
      EGE23922.1  65 ERLEFLGDALLSSIITKALFAQYPKHDEGKLTRMRAALVRQETLVQIADHLELSRHLI----------------LGVGERKGGGrhRASILADAV 143
                     8***********************999*******************************................9999999666447888***** PP

                     HHHHHHHHHHC CS
  Ribonuclease_3  94 EAliGaiylds 104
                     EAli+a+yld+
      EGE23922.1 144 EALIAAVYLDN 154
                     *********96 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   4.1e-14   1.8e-10       1      67 []     187     255 ..     187     255 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 4.1e-14
                 HHHHHHHHHHHTTSEEEEEEEEEESSTSSSEEEEE..EEEETTEEEEEEEESSHHHHHHHHHHHHHHHH CS
        dsrm   1 pKskLqeycqkkgkppnyeyvseegpphslpkFvv..tvkvngklygsGvgsnKKeAeqsAAedalekL 67 
                 +Ks+Lqe++q ++ p++++  +++ ++  +++Fvv  +++v g  +++ +g++++ Aeq++Ae+++++L
  EGE23922.1 187 AKSRLQELLQGNRLPLPTYELIQTLGSAPNQVFVVrcHCTVVGVDPIIETGASRRIAEQKCAERMINQL 255
                 79***********8888888888888888899988779999**************************98 PP

>> DND1_DSRM  double strand RNA binding domain from DEAD END PROTEIN 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.9e-07    0.0018       1      44 [.     185     228 ..     185     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.9e-07
   DND1_DSRM   1 ksavqlLeelCeknkwgsPvYelhseagpdgkllflYkVvipgi 44 
                 k+a++ L+el + n+++ P Yel  + g++  + f+++++ + +
  EGE23922.1 185 KDAKSRLQELLQGNRLPLPTYELIQTLGSAPNQVFVVRCHCTVV 228
                 5899**********************************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1962.09
//
Query:       EGE23923.1  [L=364]
Description: signal peptidase I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-18   64.9   0.1    8.5e-18   64.1   0.1    1.5  1  Peptidase_S24  Peptidase S24-like
    2.6e-11   43.5   0.0    8.2e-05   22.4   0.0    2.3  2  Peptidase_S26  Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.1   9.5e-22   8.5e-18       2      56 ..     134     205 ..     133     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 9.5e-22
                    XXSSTTCCTXXTTXEEEEECTS................---TTSEEEEEETTCE.-EEEEEEEEETTEEEEE CS
  Peptidase_S24   2 vpGdSMeptlldGdlilVdkfs................epkrGdivvfrlpgee.eayiKrviglpgdrvll 56 
                    +p+ SM ptl  Gd+i+V+k +                +pkrGd+ vfr+p ++ +++iKrviglpgd+v +
     EGE23923.1 134 IPSSSMVPTLYTGDFIIVNKAAyglrlpiihtkildtgNPKRGDVAVFRYPVNDnIYFIKRVIGLPGDTVSF 205
                    9*****************************************************9**************983 PP

>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.2e-07    0.0011      46      80 ..     185     219 ..     166     257 .. 0.81
   2 !   22.4   0.0   9.2e-09   8.2e-05      97     137 ..     305     345 ..     299     346 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-07
  Peptidase_S26  46 lprgvpllKrVlalagqevcvadgavtidgvavse 80 
                    ++ +++++KrV++l+g++v+ + g ++i+g +v +
     EGE23923.1 185 VNDNIYFIKRVIGLPGDTVSFNRGVLSINGEKVET 219
                    67889*************************55433 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 9.2e-09
  Peptidase_S26  97 crvlaegelfllskevadSfDsRYfGpvpassvigvarpvl 137
                    + v++eg++f+++++ + S D+R++G vp+s++ g+a+ ++
     EGE23923.1 305 SIVIPEGQFFVMGDNRDRSDDGRFWGFVPESNLSGKATYIW 345
                    4689*********************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2841.69
//
Query:       EGE23924.1  [L=604]
Description: GTP-binding protein LepA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-51  172.2   4.5      5e-51  171.4   4.5    1.4  1  LepA_C       GTP-binding protein LepA C-terminus
    1.6e-50  171.3   0.0    2.7e-50  170.6   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.5e-17   63.4   0.0    5.2e-17   61.7   0.0    2.0  2  EFG_C        Elongation factor G C-terminus
    3.2e-10   40.2   3.1    8.1e-10   39.0   3.1    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    8.2e-06   25.7   0.0    1.9e-05   24.5   0.0    1.5  1  RF3_C        Class II release factor RF3, C-terminal domain
    1.1e-05   25.4   0.0      4e-05   23.6   0.0    2.0  1  EFG_II       Elongation Factor G, domain II
    0.00014   22.0   0.0    0.00039   20.5   0.0    1.8  2  MMR_HSR1     50S ribosome-binding GTPase
    0.00094   18.8   0.0     0.0021   17.7   0.0    1.6  2  Ras          Ras family
  ------ inclusion threshold ------
        0.1   12.0   0.0       0.24   10.8   0.0    1.6  1  SRPRB        Signal recognition particle receptor beta subuni
       0.14   11.6   0.1        7.7    5.9   0.0    2.9  3  Arf          ADP-ribosylation factor family
       0.17   12.1   0.0       0.56   10.4   0.0    1.9  1  Roc          Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> LepA_C  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   4.5   3.1e-54     5e-51       1     107 []     495     601 ..     495     601 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.4 bits;  conditional E-value: 3.1e-54
                 ESSCB-GGG-EEEETTTHHHHHHHHHHHHHHHS---SS-EEEEEEETTEEEEEEEE----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      LepA_C   1 ingekvdaLslivhrskaeergrklvekLkeliprqlfevaiqaaigskviaretikalrkdvlaklyggditrkkKllekqkegkkrlkkignveipq 99 
                 ingekvdaL++i+h+++a++rg++lvek+keliprq+f+vaiqaaigs++iar+t+ka+rkdvlak+yggd++rkkKllekqk+gkkr+k++g+veipq
  EGE23924.1 495 INGEKVDALAMICHQEHARRRGNQLVEKMKELIPRQMFDVAIQAAIGSQIIARSTVKAMRKDVLAKCYGGDVSRKKKLLEKQKAGKKRMKQVGSVEIPQ 593
                 8************************************************************************************************** PP

                 XXXXXXXX CS
      LepA_C 100 eaflavlk 107
                 eaflavlk
  EGE23924.1 594 EAFLAVLK 601
                 ******97 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   0.0   1.6e-53   2.7e-50       2     193 ..      11     189 ..      10     190 .. 0.94

  Alignments for each domain:
  == domain 1  score: 170.6 bits;  conditional E-value: 1.6e-53
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..T.TCSSEEEEEEEESSSGGGHHHHHHHHHT-SEE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..k.etkkylinliDtPGHvdFskevirglrvlDga 97 
                  irn++ii+h+DhGK+TL dr ++ +g  s+++++a+   vlD+++ ErergiTik++ ++l+  + ++++y++n+iDtPGHvdFs ev+r+l++++ga
  EGE23924.1  11 HIRNFSIIAHIDHGKSTLADRFIQVCGGLSDREMQAQ---VLDSMDIERERGITIKAQSVTLYynHpNGETYQLNFIDTPGHVDFSYEVSRSLAACEGA 106
                 69*****************************888775...9**********************8736******************************** PP

                 EEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU  98 vlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                 +lvvda++Gve+q+  + + a ++g+++  ++NK+D ++ e ++++ee+++ +      +        + v+  ++Sa++g g+++ll +l + +p
  EGE23924.1 107 LLVVDAAQGVEAQSVANCYTAVEQGLEVLPVLNKIDLPQVEPERVIEEIEDII-----GI--------EAVEAPRVSAKTGVGIEELLATLCDVIP 189
                 **************************************************777.....22........2567889***************999887 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.5   7.3e+03      17      39 ..     210     235 ..     198     245 .. 0.63
   2 !   61.7   0.0   3.2e-20   5.2e-17       3      80 ..     408     485 ..     406     494 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.5
                 CCCCHHHHHHHCT-EEEEEEEE.... CS
       EFG_C  17 yvgkvisdlssrrGeiedmeqd...a 39 
                 ++  v+s++  r G++ + +++   +
  EGE23924.1 210 NYLGVVSLVRVREGQVSKGDKIfikS 235
                 44445558888999999877775553 PP

  == domain 2  score: 61.7 bits;  conditional E-value: 3.2e-20
                 EEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-T.THHHCHHHCTTTS-EEEEEEEEEEE CS
       EFG_C   3 lEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeli.gfateLrslTkGegsfsmefsgYee 80 
                  EPi +++i vp+ey+g+vi++  +rrG + dm+     +v + ++iP+ e++ +f+++L+s+++G +s+++ f +Ye 
  EGE23924.1 408 REPIARCHILVPQEYLGNVITLAIERRGVQVDMKFM-ARQVQVIFDIPMGEVVmDFFDKLKSASRGFASLDYGFGRYEA 485
                 6***********************************.****************************************96 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   3.1     5e-13   8.1e-10       1      74 []     213     283 ..     213     283 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 5e-13
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G+v+l+rv +G++ kGd++ i  ++t++++ivt ++       + d + ag+++ vi++ik++  a  vGdt+t
   EGE23924.1 213 GVVSLVRVREGQVSKGDKIFI--KSTGETHIVTSVGVFTPKSLETDVLHAGEVGFVIAGIKDIQGA-PVGDTIT 283
                  89*******************..***9998888888777777788999*****************8.*****96 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.1e-08   1.9e-05       4      79 ..     293     374 ..     291     391 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.1e-08
                 -EEE...--SEEEEEEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TS...S-EEEEESSTHHHHHHHHHHHHHH---EEEE CS
       RF3_C   4 iPsF...aPElfarvrlkdplkrkqlrkgleqLaeEGavqvfkeeeag...eelilgaVGqLQfeVveeRlknEYgvevrle 79 
                 iP F   +P ++a +   d++   ++r++l++L+   a+  f++++++     +  g +G L +e+++eRl++EY++++ ++
  EGE23924.1 293 IPGFqkvTPQVYAGMFPIDSSDFEKFREALQKLQINDAALFFEPDTSEalgFGFRCGFLGMLHMEIIQERLEREYDLDLITT 374
                 555533369*********************************999665432347899*******************998655 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.5e-08     4e-05      10      73 ..     307     373 ..     300     375 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.5e-08
      EFG_II  10 iepkskadedklskaLarlleEDptlrverdeeTketilsG.....mGelHleivverlkreykvevel 73 
                   p +++d +k+ +aL++l+  D  l +  +++T e +  G     +G lH+ei+ erl+rey++++ +
  EGE23924.1 307 MFPIDSSDFEKFREALQKLQINDAALFF--EPDTSEALGFGfrcgfLGMLHMEIIQERLEREYDLDLIT 373
                 5678899*****************9976..57889988766444557******************9876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.4e-07   0.00039       9     114 .]      22     140 ..      14     140 .. 0.63
   2 ?   -3.7   0.0       7.5   1.2e+04      37      56 ..     379     397 ..     372     418 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.4e-07
                 TSSHHHHHHHHHT...............STEEESSSTTSSSSEEEEEEE.....ETT.EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1   9 NvGKStLinaltg...............ekaivsdkpgtTrdinegrvk.....lkg.keielvDtpGliegaseekglgkaflaleeadlillvvdas 86 
                   GKStL  + ++               +   ++++ g T++ +  ++        +  +++++DtpG ++    + +++++++    ++ +llvvda+
  EGE23924.1  22 DHGKSTLADRFIQvcgglsdremqaqvlDSMDIERERGITIKAQSVTLYynhpnG-EtYQLNFIDTPGHVD---FSYEVSRSLA---ACEGALLVVDAA 113
                 67*********96666777777665444356778888888888888887444321.2378********655...2224444444...489*******88 PP

                 TTCSHHHHHHHHHHHHH..TTSEEEEEEES CS
    MMR_HSR1  87 eeklkpldeeleellee..akkplilvlnk 114
                 ++ +++  ++++++ +   ++ +++ vlnk
  EGE23924.1 114 QG-VEA--QSVANCYTAveQGLEVLPVLNK 140
                 44.533..3444443322244456666665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.5
                 EEEEEEETTEEEEEEECGGC CS
    MMR_HSR1  37 negrvklkgkeielvDtpGl 56 
                 +++ vk k+ +i+ vD p  
  EGE23924.1 379 IYEIVK-KNGDIIYVDNPSK 397
                 444454.5568999998864 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.0       7.8   1.3e+04      11      21 ..      24      34 ..      20      35 .. 0.87
   2 !   17.7   0.0   1.3e-06    0.0021      31     159 ..      61     187 ..      44     190 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 7.8
                SHHHHHHHHHH CS
         Ras 11 GKtslllrfvk 21
                GK++l  rf++
  EGE23924.1 24 GKSTLADRFIQ 34
                9*****99986 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.3e-06
                 TSSEEEEEEEEEET...TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG...G-SS- CS
         Ras  31 Tigvdfytkeievd...gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDlee...kravs 123
                 Ti +++   ++ ++   g++++l+  DT G  +f+   + ++  +eg+llv d  +    ++v++ ++ +++  e    ++ v nK+Dl +   +r+++
  EGE23924.1  61 TIKAQSV--TLYYNhpnGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQSVANCYTAVEQGLE----VLPVLNKIDLPQvepERVIE 153
                 4433333..3333344599*********************************************99999988777....56678*****9843333332 PP

                 HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras 124 teegeelakelglkfletSAktnenveeafeellre 159
                   e e++     ++   +SAkt  ++ee++ +l + 
  EGE23924.1 154 --EIEDIIGIEAVEAPRVSAKTGVGIEELLATLCDV 187
                 ..2333333334444558**********99998765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.24      36     102 ..      64     128 ..      44     148 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                 S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHHH CS
       SRPRB  36 essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyei 102
                 ++s++l +   + +  +l++iD PGh+ + ++++ +    +   g + vvD++ +  e+++vA  ++ +
  EGE23924.1  64 AQSVTLYYnhPNGETYQLNFIDTPGHVDFSYEVSRS---LAACEGALLVVDAA-QGVEAQSVANCYTAV 128
                 44455555224556678889*************998...66778889999965.556677777666555 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0047       7.7     116     174 ..     132     187 ..     100     188 .. 0.86
   2 ?    1.8   0.0     0.089   1.4e+02      80     105 ..     301     326 ..     294     331 .. 0.84
   3 ?   -1.0   0.0      0.64     1e+03     110     144 ..     485     519 ..     483     544 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0047
                 SEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 116 vallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                   +l + NK+Dlp+   e+ ++e+ ++  ++    +e   +sa +g g++e l  l++ 
  EGE23924.1 132 LEVLPVLNKIDLPQVEPERVIEEIEDIIGIE---AVEAPRVSAKTGVGIEELLATLCDV 187
                 5688899*******99999999887777776...8899999**********99999875 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.089
                 TTESEEEEEEETT-CTTHHHHHHHHH CS
         Arf  80 ektdavifvvDsadreRleeakeeLk 105
                 +++ a +f +Ds+d e+++ea ++L+
  EGE23924.1 301 PQVYAGMFPIDSSDFEKFREALQKLQ 326
                 566677899************99997 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.64
                 SGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG CS
         Arf 110 eeelkevallvlaNKqDlpealseeelrellglee 144
                  ++l +v +l+ + K D+   + ++e ++  g + 
  EGE23924.1 485 ADKLVRVDVLINGEKVDALAMICHQEHARRRGNQL 519
                 5788899999******9998888777766555544 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00034      0.56      11     119 ..      24     142 ..      16     143 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00034
                 SHHHHHHCHCT..-CCC-EEETTT...TEEEEEEECGGSG.....GCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHH CS
         Roc  11 GKtsllkrfve..dkfsekeksti...gvdfltkevtkik.....gvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWl 99 
                 GK++l++rf++  +  s++e +     ++d+ +++  +ik      + n+ + ++++ln+ Dt G+ +f+   +  l + + a+lv+d+ +  ++++  
  EGE23924.1  24 GKSTLADRFIQvcGGLSDREMQAQvldSMDIERERGITIKaqsvtLYYNHPNGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQSVA 122
                 7777777777644222222222220112333332222222111114457788899****************999999***********99988888888 PP

                 HHHHHHCSSS-EEEEEE-TT CS
         Roc 100 kelkkvagkspvilvgnkiD 119
                 +  ++v +   v+ v nkiD
  EGE23924.1 123 NCYTAVEQGLEVLPVLNKID 142
                 88888889999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4296.99
//
Query:       EGE23925.1  [L=138]
Description: hypothetical protein EA1_08025 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-36  123.6   0.1      1e-35  123.4   0.1    1.0  1  QueH      Epoxyqueuosine reductase QueH


Domain annotation for each model (and alignments):
>> QueH  Epoxyqueuosine reductase QueH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.1   5.6e-40     1e-35      66     174 ..       2     111 ..       1     112 [. 0.97

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 5.6e-40
        QueH  66 eefleavkglekekekgeRCekCyelrLektaelAkengfdaftttltiSplknaelineigeelae.eygvkflasdfkkkegykrsielskelglYr 163
                 +++++++kg+e+++e+g+RC++C+++r+e+ta +A+e+gf ++t++l iS++kn+++in++g+++a+   +++++  +++k +g +r+ie+sk+ ++Y+
  EGE23925.1   2 DNWFARAKGMEQDPERGRRCTMCFDMRFERTALYAHEHGFPVITSSLGISRWKNMAQINDCGHRAAApYDDLEYWDFNWRKGGGSNRMIEISKREHFYQ 100
                 79***************************************************************994559**************************** PP

        QueH 164 QkYCGCvfskk 174
                 Q+YCGC +s +
  EGE23925.1 101 QEYCGCAYSLR 111
                 *********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 980.41
//
Query:       EGE23926.1  [L=64]
Description: hypothetical protein EA1_08030 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   14.8   0.1      0.027   14.8   0.1    1.1  1  Gifsy-2   ATP-binding sugar transporter from pro-phage


Domain annotation for each model (and alignments):
>> Gifsy-2  ATP-binding sugar transporter from pro-phage
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.5e-06     0.027      24      66 ..       5      47 ..       1      61 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-06
                EEETTEEEEEEEGGGT----........------EEEEE--SS CS
     Gifsy-2 24 wtinGkkykavideapakleGlHededtaiegtskkltvfrgs 66
                 ++nG++     + + ++++G H  e+t + +t   +t+ + +
  EGE23926.1  5 RLLNGQEAHTLSSGDVLIFDGKHDIEGTFLATTMVVVTLVSKD 47
                679********************999*******9999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 513.39
//
Query:       EGE23927.1  [L=60]
Description: hypothetical protein EA1_08035 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 515.80
//
Query:       EGE23928.1  [L=38]
Description: hypothetical protein EA1_08040 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 345.59
//
Query:       EGE24235.1  [L=313]
Description: beta-lactamase family protein BRO-2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-36  123.6   0.0    9.5e-36  123.3   0.0    1.1  1  Beta-lactamase2  Beta-lactamase enzyme family
    3.3e-14   52.9   0.0    2.1e-13   50.2   0.0    1.9  1  Beta-lactamase   Beta-lactamase
  ------ inclusion threshold ------
       0.18   11.2   0.0       0.29   10.5   0.0    1.3  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.0   1.6e-39   9.5e-36       2     201 ..      73     280 ..      72     281 .. 0.93

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 1.6e-39
                      TTTSEEEESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHHHTSSSTSGG.GST.TSEEEHHHHHHHHHHTT-HHHHHHHHHHHT. CS
  Beta-lactamase2   2 dtgeelgvnadeefpaaStiKvpillalleavlegklslderltltaedivggsgilq.klp.gktlslrdlltlmiavSDNtAtnlLidrlg. 92 
                      d+ge+ +++++e fp  StiK +i+   l  v+++kl+l+e++ ++++d+ ++s++ + + + +k +s+++l++++i++SDN  +n+L+d++g 
       EGE24235.1  73 DNGELSSHRGNEYFPVNSTIKAFIASHILLLVDKEKLDLNEKIIIKESDLIEYSPVCKkYFDeNKPISISELCEATITLSDNGSANILLDKIGg 166
                      789999****************************************************5446688***************************99 PP

                      HHHHHHHHHHCTHTTSB--SHTTCCH.HHTTSSTTEE-HHHHHHHHHHHHHTTSSHHH...HHHHHHH.T-STTTTTTTTTTTTSEEEEEEEEE CS
  Beta-lactamase2  93 leavnawlkelglretrlrrklpdle.aadkdkrntttardlarllealargellspe...elleils.nqqfrdrlaaglpegvrvahKtGel 181
                      l a+n++lke g  +++l++++p l+  ++ +  +t+ +  +++ l+al+ g++ls +   +l+++l  +   +++l+++lp+++r+ +KtG+ 
       EGE24235.1 167 LTAFNQFLKEIGA-DMVLANNEPLLNrSHYGETSDTAKPIPYTKSLKALIVGNILSNQskeQLITWLInDKVADNLLRKYLPKNWRIGDKTGTG 259
                      **********988.577777777666377788899*******************************996777789******************* PP

                      TTEEEEEEEEEE.TTEEEEEE CS
  Beta-lactamase2 182 dgvrhdvGivya.dgrpyvva 201
                       + ++ +++++  +++py ++
       EGE24235.1 260 SESKNIIAVIWNeNNKPYFIS 280
                      ******************985 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   3.5e-17   2.1e-13      27     317 ..      77     291 ..      61     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 3.5e-17
                     EEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBG..............GGTSTTCTTGGGTTEBHHHHHTTHSSCS CS
  Beta-lactamase  27 vvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpV..............skylPefagpgkgkiTlrdLltHtsGlp 107
                     +                ++ ++ f++ S+ K+f a  +l lv+++kldL++++              +ky      +  ++i++ +L+++t +l 
      EGE24235.1  77 L--------------SSHRGNEYFPVNSTIKAFIASHILLLVDKEKLDLNEKIiikesdlieyspvcKKYF-----DENKPISISELCEATITL- 151
                     3..............38999****************************************55555555555.....77888*************. PP

                     SSSTSTTCTSHHHTHHHHHHHHHHSBSSSSTTSCEE-SHHHHH.HHHHHHHHHHTSHHHHHHHHHTTTT.TTSTTEESSTTGGGGGGBEEEEEEE CS
  Beta-lactamase 108 dlfasdlleeaaadaaellralatlppkyapGtkwgYsntgyg.llgellekvtgrsleqllreeilrp.Lgmkdtelgppesgdprdaagytgn 200
                                                         ++n +++ ll++ ++++t   + q+l+e  +++ L  +++ l+    g+  d+a +   
      EGE24235.1 152 ------------------------------------SDNGSANiLLDK-IGGLTA--FNQFLKEIGADMvLANNEPLLNRSHYGETSDTAKP--- 204
                     ....................................************.*****9..99999988888844889999999999999999999... PP

                     TCEEECSCETTHHHHCTTTBEEEEHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCHTEEEEEEE...STEE CS
  Beta-lactamase 201 gpearappanlpaeaegagglistardlarflglalegglllsaetlaqltaklssgttrpagiraglglGwvladktgapgtfghtG...ggyg 292
                                          i  +++l +++ +    g++ls ++ +ql+++l + ++++++ r+ l+  w+++dktg        G    +  
      EGE24235.1 205 ---------------------IPYTKSLKALI-V----GNILSNQSKEQLITWLINDKVADNLLRKYLPKNWRIGDKTGT-------GsesKNII 266
                     .....................***********.8....*****************************************8.......99999999 PP

                     EEEEEECGGTEEEEEEESBCSSHHH CS
  Beta-lactamase 293 tyvfvdpeanlvvavltnrdppned 317
                     ++++  +++++++ ++ ++ +  ++
      EGE24235.1 267 AVIWNENNKPYFISLFITQPHDGKS 291
                     999999999********99997555 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.9e-05      0.29      52     120 ..     102     168 ..      71     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.9e-05
                    HHHHTTSS-TTSEEE--GGGHGCCSGTTSSTTS-TTT-EEEHHHHHHHHHCC--HHHHHHHHHHHHSSH CS
  Peptidase_S11  52 ealkkgklkeddkvtisedayalgnnkevsniflkkgskvsvkdLlegllvssgNdAavalAekiaGse 120
                      ++k+kl++++k+ i e+       + v + + ++++ +s+++L e+++  s+N  a  l +ki+G  
     EGE24235.1 102 LLVDKEKLDLNEKIIIKESDLIEY--SPVCKKYFDENKPISISELCEATITLSDNGSANILLDKIGGLT 168
                    445667777777777766555444..579999999******************************9943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2669.34
//
Query:       EGE24236.1  [L=490]
Description: aspartyl/glutamyl-tRNA amidotransferase subunit B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.9e-106  353.8   0.0   7.3e-106  353.5   0.0    1.1  1  GatB_N       GatB/GatE catalytic domain
    3.5e-52  176.2   2.2    5.7e-52  175.5   2.2    1.4  1  GatB_Yqey    GatB domain
  ------ inclusion threshold ------
       0.21   10.9   0.0       0.38   10.1   0.0    1.3  1  Rhomboid_SP  Rhomboid serine protease


Domain annotation for each model (and alignments):
>> GatB_N  GatB/GatE catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.5   0.0  1.2e-109  7.3e-106       1     272 [.      13     299 ..      13     300 .. 0.97

  Alignments for each domain:
  == domain 1  score: 353.5 bits;  conditional E-value: 1.2e-109
                 EEEEEEEEEEB--SB-SSSSSBSSSSCESTTSS--TTTTTSTT..--EEHHHHHHHHHHHHHTTEEE-SEE-EEEEE-TCTTCTTSEEEEESSS.SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N   1 lviGlEiHaqlktksKlFssasteeegeepnsevsevdlalPGtlPvlnkeavelaikaalalnceiaeeskfdRKnyfypdlpkgyQitqkeeplake 99 
                 +viG+EiH+ql+t+sK+Fs+a+t  +g+epn++ + vdl++PG+lPvln+ ++e a+k+++ +n+++ +  +fdRKnyfypdlpkgyQitq+ +p++ e
  EGE24236.1  13 VVIGIEIHCQLNTDSKIFSNAPTV-FGQEPNTQATIVDLGFPGVLPVLNAGVIERALKFGMGVNAKLGTYNTFDRKNYFYPDLPKGYQITQMANPIVGE 110
                 69********************65.************************************************************************** PP

                 EEEEE..........TEEEEEEEEEEEE---EEEEE.ETTEEEEETTSTT-EEEEEEE-STB-SHHHHHHHHHHHHHHHHHHTSB--SGGGTTEEEEEE CS
                 xxxxx..........xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N 100 Gslel..........ekkvrierihlEeDaaksvhe.ekeeslvdlnRaGvpLiEivtepdlrspeearavveklrellralgvsdgnmeeGslRcDvN 187
                 G++++          +k+++i+r+hlEeDa+ksvh+   +++ vdlnRaG+pLiEiv+epd+rs +ea+a+v++++el+++lg+sd+ m eGs+R+D+N
  EGE24236.1 111 GYIDIlvnagqkdeyTKRIGITRAHLEEDAGKSVHDaVPQMTGVDLNRAGTPLIEIVSEPDMRSVDEAVAYVKTIHELVTWLGISDAIMAEGSFRADIN 209
                 *****9****999999999****************755679********************************************************** PP

                 EEECTSETTSSS.--EEEEEE-SHHHHHHHHHHHHHHHHHHH.......-EEEEEETTTTEEEEECC----...-EEE-TTS--EE--HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N 188 vSvreeekgeeegtrvEiKnlnslksiekaieyeierqiell.......qeTrkfdedkgetvslRskeeaedYryfpepdlppleiseeli 272
                 vSv++   ++  gtr+E+Knlns+++i++ai+ eierqi+++       q Tr +d+++ et+++R+keea+dYryfp+pdl p+ is+e++
  EGE24236.1 210 VSVHK--PNTPFGTRCELKNLNSFRFIHRAIKSEIERQIDVIedggkvvQATRLYDPERDETRAMRTKEEANDYRYFPDPDLLPVIISDETL 299
                 ****4..45556****************************************************************************9976 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   2.2   9.6e-56   5.7e-52       2     148 .]     340     488 ..     339     488 .. 0.95

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 9.6e-56
                 HHHHHHHHS..S.HHHHHHHHHTCHHHHHHHHTXXTTCSSTTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHHTXXHHHHHHHCTXXXXXXSSXHHHHH CS
   GatB_Yqey   2 ffeevvkeg..adaklaanwllnellgelnkegleieelkltpeqlaellkliaegkIskkiakevleelleegkspeeiieekgLkqisdeeeleklv 98 
                 +f +v++ +  ++ak+aanw+++el g+lnk++l+i+++++++++la l+ +i +++Is+kiakev+ +l+e++ks++eii+ekgLkq +d++++e+++
  EGE24236.1 340 YFLQVLDIIgkNNAKIAANWVMGELSGSLNKNELTIDQSPISAKRLAGLIVRILDDTISGKIAKEVFGHLWESDKSADEIITEKGLKQETDTGAIEAII 438
                 6666666654357************************************************************************************** PP

                 HHHHHTXHHHHHHHTTXXTTSTHHHHHHHHHTTSSXSXHHHHHHHHHHHS CS
   GatB_Yqey  99 eeviaenpkavedyksgkekalkflvGqvMkktkGkadpklvnellkekL 148
                  +v+a+n+++v++yk+gkeka++ lvGqvMk+++Gka+p++vn llk+++
  EGE24236.1 439 VDVLANNQAMVDEYKGGKEKAFNGLVGQVMKASRGKANPAQVNALLKQMI 488
                 ***********************************************975 PP

>> Rhomboid_SP  Rhomboid serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   6.3e-05      0.38      71     134 ..     268     333 ..     253     342 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.3e-05
  Rhomboid_SP  71 rGrafrlveevd.glsvPqtPltPgvaslcsftssrsglnrlPrrrkresvakmslkaa.aallkG 134
                    ra+r+ ee++     P + l P  +s  +++ +r+ +  lP  rk   v + +l a  a++l G
   EGE24236.1 268 ETRAMRTKEEANdYRYFPDPDLLPVIISDETLAKVRADMPELPSVRKERFVNEFGLTAYdANVLNG 333
                  57********7615668**************************************99952566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 4008.54
//
Query:       EGE24237.1  [L=174]
Description: cytochrome c class I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-11   43.0   0.1    5.9e-11   42.5   0.1    1.2  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    0.00042   21.2   0.4    0.00048   21.0   0.4    1.1  1  PRCC             Mitotic checkpoint regulator, MAD2B-interact
  ------ inclusion threshold ------
       0.17   13.0   2.1       0.24   12.6   0.6    2.0  2  Cytochrom_C      Cytochrome c
       0.43   10.7   7.5       0.68   10.1   7.5    1.3  1  CBP_BcsO         Cellulose biosynthesis protein BcsO
        1.1    9.9   6.9        1.4    9.5   6.9    1.2  1  SPATA3           Spermatogenesis-associated protein 3 family


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.1   1.6e-14   5.9e-11       2      67 .]      94     169 ..      93     169 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.6e-14
  Cytochrome_CBB3   2 aaaaGaalykknCasCHgkggag.pslagr.dwep.......dalvdiiknGkgaMpafgg.qlsdeelwalvaYl 67 
                       ++ G+a+y+k+C  CH++g +  p+++++ +w++       ++l+++  +G+++Mpa++  ++ + e+ a+v+Y+
       EGE24237.1  94 SIEVGKARYEKTCKVCHDAGLLEaPKITDKaEWQKrldekglETLQAHSAKGFNKMPAQAIgDVAESEVYAAVNYI 169
                      5789**************8988757777778***889999*******************966*************8 PP

>> PRCC  Mitotic checkpoint regulator, MAD2B-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.4   1.3e-07   0.00048       3     153 ..      13     169 ..      12     174 .] 0.48

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.3e-07
        PRCC   3 FSl...........esasassssaaaksaptisyeplvssapeaeeseeedppetepepasqpeaenadleakkaakssea.mvpepteqdp..vkens 87 
                 FSl           + +++++++  +++ +t ++ep+  +++++ e+++          + +++++++++e ++ ++     ++  p e  +  v +  
  EGE24237.1  13 FSLclglwltgcgsDNSTSTPAPVNETQPSTPTSEPAPAQPEPSVETQA----------TPETAETQDAPEVAEVTEPVDVtTSHAPVEAASieVGKAR 101
                 6666666666655433333333333333333444444444442222222..........1111111222222222222211222222222223233333 PP

        PRCC  88 knypgyyllpsg..........sqqpqe.dasdlnlddealrqLlGrrggnrkreeikeakiieinedeelkaneqw 153
                 ++++       +          ++   + ++ +  ld++ l+ L++++++  +  +  +++i ++ e+e+++a +  
  EGE24237.1 102 YEKTC------KvchdaglleaPKIT-DkAEWQKRLDEKGLETLQAHSAK--GFNKMPAQAIGDVAESEVYAAVNYI 169
                 33333......133334688643223.2599999************9955..6677777899*********998765 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.9     1e+04      29      32 ..      55      58 ..      29      77 .. 0.53
   2 ?   12.6   0.6   6.7e-05      0.24       3      89 ..      97     170 ..      95     173 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.9
                 --HH CS
  Cytochrom_C 29 ptls 32
                 p   
   EGE24237.1 55 PSVE 58
                 2222 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 6.7e-05
                  -HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHH CS
  Cytochrom_C   3 rGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLk 89 
                   Gk+ +++ C  CH ++  +a     p++++ ae++    ++   +  a       ++  +k+ a+++ +   + e e+ + ++Y+ 
   EGE24237.1  97 VGKARYEKTCKVCHDAGLLEA-----PKITDKAEWQKRLDEKGLETLQA-----HSAKGFNKMPAQAIGD---VAESEVYAAVNYIL 170
                  59999*99******9999998.....67766666555544444444442.....3344444444444454...77888888888876 PP

>> CBP_BcsO  Cellulose biosynthesis protein BcsO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   7.5   0.00019      0.68     106     166 ..      22      83 ..      15      93 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
    CBP_BcsO 106 aslasaesvsiiaPvtiasr.ePvsapqpaaltietvppatvrphplasaaavseasaasea 166
                 ++  s +s s +aPv ++ + +P s+p pa         at+      +a++v+e +++++ 
  EGE24237.1  22 TGCGSDNSTSTPAPVNETQPsTPTSEPAPAQPEPSVETQATPETAETQDAPEVAEVTEPVDV 83 
                 6778999**********9999*********9887777889999999*************996 PP

>> SPATA3  Spermatogenesis-associated protein 3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.9   0.00039       1.4      24      86 ..      29      89 ..      22     113 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00039
      SPATA3 24 sestsqqpssesapqqpesestpsktssestsqqaspestpqqpasqalpapekrassrslvs 86
                s st+  p +e++p++p+se++p +++++ ++ qa+pe++  q a++    +e    ++s ++
  EGE24237.1 29 STSTP-APVNETQPSTPTSEPAPAQPEPSVET-QATPETAETQDAPEVAEVTEPVDVTTSHAP 89
                33444.3999**********999999998765.466777777777776655555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1346.09
//
Query:       EGE24238.1  [L=224]
Description: OmpA/MotB domain protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-24   86.0   0.3    3.6e-24   85.0   0.1    1.6  2  OmpA             OmpA family
    5.9e-06   26.1  13.8    5.9e-06   26.1  13.8    2.2  2  Rick_17kDa_Anti  Glycine zipper 2TM domain
    7.8e-06   25.5  20.6    7.8e-06   25.5  20.6    2.2  2  Gly-zipper_YMGG  YMGG-like Gly-zipper
    4.9e-05   23.2  16.8    4.9e-05   23.2  16.8    2.5  2  Gly-zipper_Omp   Glycine zipper
    0.00027   20.7   1.5     0.0012   18.6   0.1    2.3  2  Pilus_CpaD       Pilus biogenesis CpaD protein (pilus_cpaD)
    0.00031   20.2   4.7    0.00038   19.9   4.7    1.2  1  DUF3482          Domain of unknown function (DUF3482)
  ------ inclusion threshold ------
          5    7.3  24.5       0.57   10.3   3.9    2.5  2  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.9   7.6e+03      52      67 ..      83      98 ..      81     108 .. 0.70
   2 !   85.0   0.1   1.4e-27   3.6e-24       1      95 []     117     212 ..     117     212 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.9
                HHHHHHHHHHHHTTSS CS
        OmpA 52 kRAeaVanylqnegvp 67
                + A+++++ +q  gv+
  EGE24238.1 83 RQAKQIEQQMQGTGVT 98
                5677777777766654 PP

  == domain 2  score: 85.0 bits;  conditional E-value: 1.4e-27
                 .B-TTS--B-GGGHHHHHHHHHHHH.S-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk.kpeqkitveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkarnr 95 
                 +Fa ++ +L+ +    l+++a++++   e  i++ Ghtd++g +++n+eLS++RA++V+ yl+n+gv+p ri+++gyG ++pi++n+t++++a+nr
  EGE24238.1 117 TFAHDDDTLNSAFLGRLNQLANTMNqYHETTIVIVGHTDSTGQAAYNQELSERRADSVRYYLINQGVDPYRIQTVGYGIRQPIASNATEAGRAQNR 212
                 699999*******************544555***************************************************************98 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   3.0       5.7   1.5e+04      21      31 ..      24      34 ..      16      35 .. 0.49
   2 !   26.1  13.8   2.3e-09   5.9e-06       3      38 ..      40      82 ..      39      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5.7
  Rick_17kDa_Anti 21 ggrvlGavvGA 31
                     g +  G+  G+
       EGE24238.1 24 GTTGNGTGFGG 34
                     33445555555 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 2.3e-09
  Rick_17kDa_Anti  3 aliGAaaGgvaGaaigg.......gggrvlGavvGAaaGavaG 38
                     a+iGA+aG++ G ai++       g++++lGa+vGAaaGa+  
       EGE24238.1 40 AVIGAVAGALGGTAISKatggektGRDAILGAAVGAAAGAYME 82
                     89*************6668888888888888888888888765 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2  15.7    0.0008       2.1      18      45 ..      27      56 ..      16      57 .. 0.68
   2 !   25.5  20.6     3e-09   7.8e-06       4      45 ..      37      83 ..      34      84 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0008
                     XXXXXXXXXXX........XXXXXXXXXXXXXXXX- CS
  Gly-zipper_YMGG 18 GaliGsgggkG........AaiGAaaGalaGgaiGa 45
                     G      +g+G        A+iGA+aGal+G+ai +
       EGE24238.1 27 G------NGTGfgganvnkAVIGAVAGALGGTAISK 56
                     3......334455666666**************976 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 3e-09
                     .XXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXX- CS
  Gly-zipper_YMGG  4 vrGAaiGAaaGAvvGaliG.....sgggkGAaiGAaaGalaGgaiGa 45
                     v++A+iGA+aGA++G +i      +++g++A+ GAa+Ga+aG++  +
       EGE24238.1 37 VNKAVIGAVAGALGGTAISkatggEKTGRDAILGAAVGAAAGAYMER 83
                     556666666666666666655558888899*************8766 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0  17.8    0.0097        25      13      43 ..      26      59 ..      16      62 .. 0.67
   2 !   23.2  16.8   1.9e-08   4.9e-05       1      45 [.      42      84 ..      40      93 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0097
  Gly-zipper_Omp 13 iGgavg....grgtGaliGAavGaavGgliGaamd 43
                     G+ +g    + +  a+iGA++Ga++G +i++a++
      EGE24238.1 26 TGNGTGfggaN-VNKAVIGAVAGALGGTAISKATG 59
                    44444444212.5689***************9985 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 1.9e-08
  Gly-zipper_Omp  1 iGaaiGAaaGaliGgavggr..gtGaliGAavGaavGgliGaamdkq 45
                    iGa++GA+ G +i +a+gg   g+ a+ GAavGaa+G+    +m++q
      EGE24238.1 42 IGAVAGALGGTAISKATGGEktGRDAILGAAVGAAAGA----YMERQ 84
                    56666666666666677754225666666666666666....44433 PP

>> Pilus_CpaD  Pilus biogenesis CpaD protein (pilus_cpaD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.16     4e+02       2      17 ..      11      26 ..      10      39 .. 0.81
   2 !   18.6   0.1   4.7e-07    0.0012      44     121 ..     116     198 ..      69     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.16
  Pilus_CpaD  2 lalalllagCastaas 17
                la++++lagCa+t  +
  EGE24238.1 11 LASSMALAGCANTGTT 26
                78899*****988765 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 4.7e-07
  Pilus_CpaD  44 lkvasgdggLtaaqrarlealaeeyrregagaivisvpsgss.....neaaaaaaaaeiravlaaaGvpaseisvrayqaaap 121
                 +++a+ d +L++a   rl++la+++ ++ +++ivi  +++s      n++ +++ a+++r +l+++Gv + +i+  +y  ++p
  EGE24238.1 116 ITFAHDDDTLNSAFLGRLNQLANTMNQYHETTIVIVGHTDSTgqaayNQELSERRADSVRYYLINQGVDPYRIQTVGYGIRQP 198
                 6778999****************************87655540111155667788999******************9988766 PP

>> DUF3482  Domain of unknown function (DUF3482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   4.7   1.5e-07   0.00038     151     203 ..      41     106 ..      33     175 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.5e-07
     DUF3482 151 gaGaaaGAaaGagiDlavgGltLGaaaaiGalaGglaa.tlkrygkrllaklk............G 203
                 + Ga+aGA+ G +i  a+gG   G  a++Ga++G++a+ +++r  k+++++++            G
  EGE24238.1  41 VIGAVAGALGGTAISKATGGEKTGRDAILGAAVGAAAGaYMERQAKQIEQQMQgtgvtvthdtdtG 106
                 679*******************************98751556777788888875555555555442 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  13.7     0.086   2.2e+02      26      61 ..      18      53 ..       7      54 .. 0.87
   2 ?   10.3   3.9   0.00022      0.57      14      41 ..      56      80 ..      52     116 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.086
  Bacteriocin_IIc 26 ggivggalaGaatGaatlgilgaavGavvGavvGai 61
                     +g++  +++G +tG+  +++  a++Gav+Ga++G +
       EGE24238.1 18 AGCANTGTTGNGTGFGGANVNKAVIGAVAGALGGTA 53
                     567777899999999999**************9976 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00022
  Bacteriocin_IIc 14 kVeGGkcaqgtvggivggalaGaatGaa 41
                     k  GG    +t+ ++++ga+ Gaa+Ga+
       EGE24238.1 56 KATGG---EKTGRDAILGAAVGAAAGAY 80
                     55799...9******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1627.58
//
Query:       EGE24239.1  [L=318]
Description: putative acyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-15   56.0   0.0    4.9e-15   55.3   0.0    1.3  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   2.8e-19   4.9e-15       8     134 ..      94     243 ..      88     244 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 2.8e-19
  Acyltransferase   8 enlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidR.......ksnaraagslenise...llee 91 
                      +nl+++g+++l++NHqs++D  +++++ + + + + +++ ak+el++ip++g+++  l+f  ++R       k+ + a+  l+++++    l++
       EGE24239.1  94 KNLNPNGKYLLICNHQSWVDTSIIQYISEGR-L-PITRFFAKHELIYIPVVGQAFYFLDFPMMKRhtkaqiaKNPQLARRDLDEALRacqSLKN 185
                      689999********************99333.4.899***********************************9999999999999999889999 PP

  Acyltransferase  92 gkl.vviFPEGtrsre.........gel.lpfkkGlvrlaakak....kgvpivPvai 134
                      ++  ++ ++EGtr+ +         +++ l++k+G + la++      +g+ ++++++
       EGE24239.1 186 KPFvLLNYLEGTRFTAekhtkqsspYKHlLRPKAGGFALALSSLgdeiDGILDMTLVY 243
                      9999999********9888888888555699999999999988777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2480.73
//
Query:       EGE24240.1  [L=347]
Description: hypothetical protein EA1_07599 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2930.18
//
Query:       EGE24241.1  [L=260]
Description: septum site-determining protein MinC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-24   83.5   0.0    1.4e-23   82.8   0.0    1.3  1  MinC_C    Septum formation inhibitor MinC, C-terminal domain
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.032   14.2   0.0    1.3  1  MinC_N    Septum formation inhibitor MinC, N-terminal domain


Domain annotation for each model (and alignments):
>> MinC_C  Septum formation inhibitor MinC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   1.6e-27   1.4e-23       2      97 ..     154     249 ..     153     254 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 1.6e-27
                 E-S-B-TT-EEEES.SEEEESC-B-TT-EEEESS-EEEEEEE-SEEEE-TTS-TT--EEEEEE--SEEEET.TEEEE--TT-..--S-EEEEE..ETT CS
      MinC_C   2 vkktvRsGqqieae.gdlvvlgdVnpGAeviAdgniivlGalrGrahAGakgneearifalklepeqlrIa.dyiaraseeeeeekepeiaqisleed 97 
                 +++++RsGq++++  gdl+v+g Vn+GAe i d++ +++G+  Gr +AGa+g++earif++k++p+++++a +y+    + +++e+  +++q++++e 
  EGE24241.1 154 HTHMLRSGQSLQHLgGDLTVIGGVNDGAEAITDNSLHIYGRGLGRLVAGATGDKEARIFCQKFNPSLVSVAgTYCL--RDAIPSEMIDQAVQVTYDEA 249
                 6789*******************************************************************99999..77778888899999977665 PP

>> MinC_N  Septum formation inhibitor MinC, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.5e-06     0.032       2      98 ..       2      90 ..       1      96 [. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.5e-06
      MinC_N  2 eqapvelksskltvlvleLhtsdlerikqkLsdkiaeaPklfknapvvldvskleekvdlkaLkelisraglrivgvsgckdkaskeeimkagLpvL 98
                 qa+  l + +lt + l++ht dl +i + L + + + P      p+v+d +    +++l aL +++  + ++++gv       + +++ ++ L++ 
  EGE24241.1  2 TQAV-TLFGKMLTFSRLKVHTDDLTEIRKDLMQVLSNNPIA-SGLPIVIDSTV---NLELDALIDMLWLMDVQPIGV---VSGPLDNQARDLRLAIF 90
                4555.9999************************99999987.99*****9764...78999***************9...45555555666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1941.19
//
Query:       EGE24242.1  [L=271]
Description: septum site-determining protein MinD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-22   79.1   0.1    3.8e-22   78.7   0.1    1.1  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    9.5e-21   74.5   0.1    1.5e-20   73.8   0.1    1.3  1  AAA_31       AAA domain
    6.5e-17   61.8   0.7    1.7e-16   60.4   0.7    1.7  1  ParA         NUBPL iron-transfer P-loop NTPase
    1.2e-10   41.2   0.5      2e-10   40.4   0.5    1.3  1  MipZ         ATPase MipZ
    4.5e-08   32.6   4.7    2.5e-07   30.2   2.2    2.7  3  ArsA_ATPase  Anion-transporting ATPase
    7.2e-08   32.2   0.0    2.1e-07   30.7   0.0    1.8  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    1.3e-07   31.3   1.3    1.8e-06   27.6   1.3    2.2  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
    5.4e-05   23.0   0.7    0.00012   21.8   0.7    1.8  1  AAA_24       AAA domain
  ------ inclusion threshold ------
      0.029   14.0   3.0      0.058   13.0   1.0    2.1  2  SRP54        SRP54-type protein, GTPase domain
      0.042   13.7   0.1       0.16   11.7   0.1    1.9  2  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
       0.17   11.2   1.5        1.2    8.5   1.0    2.0  2  ATPase       KaiC
        0.2   11.7   0.7       0.45   10.6   0.7    1.7  1  DUF87        Helicase HerA, central domain
       0.28   10.1   1.4       0.51    9.3   1.3    1.6  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB


Domain annotation for each model (and alignments):
>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.1   2.8e-25   3.8e-22       1     128 []       5     228 ..       5     228 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 2.8e-25
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 ++++s+kGGvGKTt++a++++ la+rg++++ +D+D+   nl +++g en+i                                               
  EGE24242.1   5 VVVTSGKGGVGKTTTSASFGAGLAKRGFKTVIIDFDVGLRNLDLIMGCENRIVYdfvdvisgnaklaqalvkdkqfenlyilpasqtrdkdaltdegva 103
                 689************************************************************************************************ PP

                 .................................................CCHCCCHHHHHHCHCHHHH...EEEEEEEEESS...-TTCHHHHHHHHHH CS
                 .................................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .................................................dlkrllellealgkkkall.lkiagvvlnrvdgeneetllkealeelkqr 103
                                                                  d +r++++l++  kk+++       +v++r++++++ + ++ ++ ++  +
  EGE24242.1 104 kvmkeladdmkfdfiicdspagiergaqlamyhadealivtnpevssvrDSDRIIGILQSRTKKVEDGgSVREHLVITRYNPQRAAEGEMMDYHTIADE 202
                 **********************************************************88887777779999*************************99 PP

                 C.TS-EEEEEE--CCHCCCCHHTS-H CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 104 y.gvpvlgviprdeavaeapargepv 128
                 + +vp++g+ip++ av ea ++g+pv
  EGE24242.1 203 IlRVPLIGIIPESNAVLEASNQGQPV 228
                 9**********************997 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.1   1.1e-23   1.5e-20       2     170 ..       3     167 ..       2     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 1.1e-23
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQ.anattglgiekneiektlyevlieeknikeaiiktk.venldlipssidLaeaeielv 98 
                 k+++++  KGGvGKTTts  ++a lak+g k+ ++D+D    n+   +g+ +n+i  ++++v+  ++++++a++k+k +enl+++p+s      +++ +
  EGE24242.1   3 KIVVVTSGKGGVGKTTTSASFGAGLAKRGFKTVIIDFDVGlRNLDLIMGC-ENRIVYDFVDVISGNAKLAQALVKDKqFENLYILPASQT---RDKDAL 97 
                 99************************************863688888886.7888899****9999999999998877*********964...455555 PP

      AAA_31  99 elekkeeilkellekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayaleGleqllktieevkkk 170
                 + e   +++kel +++  ++D+ii D p  ++  ++ a++ +d+ +i++++e  +++  ++++  +++  kk
  EGE24242.1  98 TDEGVAKVMKELADDM--KFDFIICDSPAGIERGAQLAMYHADEALIVTNPEVSSVRDSDRIIGILQSRTKK 167
                 6666677777777766..5**********************************9999988888877776665 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.7   1.3e-19   1.7e-16       3     244 ..       2     246 ..       1     248 [. 0.73

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.3e-19
        ParA   3 kkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgvee...........ekpeqsekkli.Pvea.kgikvmSigflles.ede 87 
                  k+++v+SgKGGVGK+t+++++ + Lak+g+k+ ++D D+   ++  ++g+e+                 ++kl   + + k+ + + i    ++ +++
  EGE24242.1   2 AKIVVVTSGKGGVGKTTTSASFGAGLAKRGFKTVIIDFDVGLRNLDLIMGCENrivydfvdvisG-----NAKLAqALVKdKQFENLYILPASQTrDKD 95 
                 5799*************************************************555554322211.....32332122223334333333333320244 PP

        ParA  88 avvwrGpmkskaikqllkdvewgelDyLiiDlPPGtg.DeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkv..lGvveNmsgfvcpkcg 183
                 a+      ++k++k+l  d+++   D++i D P G    +ql++    + ++a+iVt p+  ++ d  + i ++++   kv   G v    +++  + +
  EGE24242.1  96 ALT--DEGVAKVMKELADDMKF---DFIICDSPAGIErGAQLAMY---HADEALIVTNPEVSSVRDSDRIIGILQSRTKKVedGGSVREHLVITRYNPQ 186
                 444..44577899999999876...8*********8624566665...5679*********************99766555226888877776666555 PP

        ParA 184 ekteifgkgggeklaeelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaek 244
                 +  e    +  + + e l vpl+g ip ++++ eas++g+p++   ++s+a + +e+i+++
  EGE24242.1 187 RAAEGEMMDYHTIADEILRVPLIGIIPESNAVLEASNQGQPVIHF-TDSAAGQCYEDIVSR 246
                 5555444444455556689*********************98766.589999999999876 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.5   1.4e-13     2e-10       2     176 ..       4     196 ..       3     204 .. 0.71

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.4e-13
                 EEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHH..HHHHHHHHHHT--....----.....EEE-SSS-HHHHTTS-HHHHHHHH CS
        MipZ   2 vivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlaryl..enraataerkgls....Lplp.....ealalseaeeaeveeeeeaevael 89 
                 ++v++  kGG Gk+tt+      L+k+G++   id+d+  r l   +  enr        +s    L+++     ++ +l    +++  +++  +++ +
  EGE24242.1   4 IVVVTSGKGGVGKTTTSASFGAGLAKRGFKTVIIDFDVGLRNLDLIMgcENRIVYDFVDVISgnakLAQAlvkdkQFENLYILPASQTRDKDALTDEGV 102
                 89***********************************87777766553389986544333330000222200001222333334456667777777888 PP

                 HHHHHHHHH..H-SEEEEE--SS--HHHHHHHHT-SE..EEE.EEESSHHHHC.CCEEE-SSS--EEE.E-HHHHHHHHHHHTTTTT-SS--EE CS
        MipZ  90 eelvadlea..eldfividtPGsdsalsrlahsladt..lvt.Plndsfvdfd.llgkvdpetlkvkr.pslyaelvwearkkrakaerkevdW 176
                 ++++++l+   ++dfi+ d+P   ++ ++la  +ad   +vt P   s+ d d ++g +++ t kv+   s+   lv    + ++ ae +++d+
  EGE24242.1 103 AKVMKELADdmKFDFIICDSPAGIERGAQLAMYHADEalIVTnPEVSSVRDSDrIIGILQSRTKKVEDgGSVREHLVITRYNPQRAAEGEMMDY 196
                 8888888652278********************99953355546778888999778999*******8615666667766666666678899987 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   2.2   1.8e-10   2.5e-07       3      38 ..       5      40 ..       2      46 .. 0.92
   2 ?   -0.2   0.0      0.33   4.6e+02     115     133 ..     105     123 ..      69     127 .. 0.82
   3 ?    0.9   0.0      0.15   2.1e+02     210     232 ..     141     163 ..     129     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.8e-10
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase  3 vilvgGKGGVGKttvsaatavklsekgkkvllistD 38
                 v++ +GKGGVGKtt sa++++ l++ g k+++i  D
   EGE24242.1  5 VVVTSGKGGVGKTTTSASFGAGLAKRGFKTVIIDFD 40
                 56779***************************9877 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.33
                  HHHHHHHCSSSSEEEEESB CS
  ArsA_ATPase 115 ellkyvkeeeydvvvlDta 133
                   ++++ +++++d ++ D++
   EGE24242.1 105 VMKELADDMKFDFIICDSP 123
                  4566677999*****9974 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.15
                  EEEEESSHHHHHHHHHHHHHHHH CS
  ArsA_ATPase 210 rlVvipEklslkEteRaikeLkk 232
                   +V++pE  s++++ R i  L++
   EGE24242.1 141 LIVTNPEVSSVRDSDRIIGILQS 163
                  58**************9988876 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.5e-10   2.1e-07       3     152 ..       4     151 ..       1     245 [. 0.70

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.5e-10
    CBP_BcsQ   3 vlalqGvRGGvGttsllaaLawalhelgesvlviDlspd.nlLrlhFnvdieqregwaraeldgapwrqaale..yapgldllPfGelnveekenlqql 98 
                 +++++  +GGvG+t+ +a+ +  l + g + ++iD+ +    L l    + +    ++     +a++ qa ++    ++l +lP  +++++++ +    
  EGE24242.1   4 IVVVTSGKGGVGKTTTSASFGAGLAKRGFKTVIIDFDVGlRNLDLIMGCENRIVYDFVDVISGNAKLAQALVKdkQFENLYILPASQTRDKDALTD--- 99 
                 66777779***************************98753568999999999999999999999999999986225679*******9999999954... PP

    CBP_BcsQ  99 aekaeallaalkelk..eqyrwillDlpagasaltrellaladlvllvvepdanch 152
                     e +++ +kel+   ++++i+ D pag ++ ++ ++ +ad  l v++p++++ 
  EGE24242.1 100 ----EGVAKVMKELAddMKFDFIICDSPAGIERGAQLAMYHADEALIVTNPEVSSV 151
                 ....455555566655568********************************99763 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   1.3   1.3e-09   1.8e-06       5     258 ..       8     261 ..       3     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.3e-09
   Fer4_NifH   5 iyGkGGiGksttsqnlsaalaemgkkvlivGCDPkaDstrlllggkaqetvldtlrekgavedvkvedvvkkGyggvkcvesGGPepGvGCaGrgvita 103
                   GkGG+Gk+tts+   a la++g k +i+  D       l++g  +   v d +       ++    v  k +++++ + +         +  gv + 
  EGE24242.1   8 TSGKGGVGKTTTSASFGAGLAKRGFKTVIIDFDVGLRNLDLIMGCENR-IVYDFVDVISGNAKLAQALVKDKQFENLYILPASQTRDKDALTDEGVAKV 105
                 56*************************************999988766.888888887777899999999999**********999999999***9865 PP

   Fer4_NifH 104 ielleelgayddlDfvlyDvLGDvvCGGfalPiredkaqevyivtsgelmalyaanniakgiekyaks...gg.vrlgGlii..nsrkvdderelie.. 194
                    ++el    ++Df++ D    +  G     ++  +a+e +ivt+ e+ ++  +++i   ++  +k+   gg vr   +i+  n +  + e e+++  
  EGE24242.1 106 ---MKELADDMKFDFIICDSPAGIERGA---QLAMYHADEALIVTNPEVSSVRDSDRIIGILQSRTKKvedGGsVREHLVITryNPQ-RAAEGEMMDyh 197
                 ...6666666689******998887664...455669********************986665443322223337776666422433.34455555411 PP

   Fer4_NifH 195 kfaee.lgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkilenkklviPkplse 258
                  +a+e l ++++ ++P ++ v +a+ + + vi++++++  ++ y+++ ++ l ++  ++  ++++
  EGE24242.1 198 TIADEiLRVPLIGIIPESNAVLEASNQGQPVIHFTDSAA-GQCYEDIVSRFLGEDVPLRHLEVKK 261
                 445552689************************988776.999***9999888776666666655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.7   8.8e-08   0.00012       2      60 ..       3     109 ..       2     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8.8e-08
      AAA_24   2 klkiliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdieswedfldevvel.................................. 59 
                 k+ ++  G+ g+GKTt+ +++       g k+++id++ Gl++ld + + + + + df+d +  +                                  
  EGE24242.1   3 KIVVVTSGKGGVGKTTTSASFgaglakrGFKTVIIDFDVGLRNLDLIMGCENRIVYDFVDVISGNaklaqalvkdkqfenlyilpasqtrdkdaltdeg 101
                 5678888*********************9****************999888877777777776665555555555555555555555555555555555 PP

      AAA_24  60 .......a 60 
                         
  EGE24242.1 102 vakvmkeL 109
                 55555543 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.0   4.2e-05     0.058       3      38 ..       5      40 ..       3      43 .. 0.90
   2 ?    0.6   0.0      0.28   3.8e+02      71      91 ..     102     122 ..      68     163 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-05
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllvaaD 38
                v++  G  G+GKTtt a   a l k+g k++++  D
  EGE24242.1  5 VVVTSGKGGVGKTTTSASFGAGLAKRGFKTVIIDFD 40
                67778999************************9888 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHTTSSEEEEEE CS
       SRP54  71 vakeavekakeekidvvlvDT 91 
                 vak   e a++ k+d++++D+
  EGE24242.1 102 VAKVMKELADDMKFDFIICDS 122
                 444444556677899999997 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00012      0.16       1      34 [.      10      43 ..      10      49 .. 0.92
   2 ?   -0.8   0.0      0.84   1.2e+03      96     151 ..     110     166 ..      78     196 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
      CLP1_P  1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGq 34
                G+  +GK+T ++     ++++g k+v++D DvG 
  EGE24242.1 10 GKGGVGKTTTSASFGAGLAKRGFKTVIIDFDVGL 43
                66789***************************95 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.84
      CLP1_P  96 eenkkakasgliIntpGwvk...glgaellleliealepdvvvvldqeellnelkrdlp 151
                 +   ++k +++i ++p  ++   +l++ +  e++ + +p+v  v d+++    l++  +
  EGE24242.1 110 AD--DMKFDFIICDSPAGIErgaQLAMYHADEALIVTNPEVSSVRDSDRIIGILQSRTK 166
                 33..3566677777776665211223344466777777777777777777666666555 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.0   0.00085       1.2      21      59 ..       5      42 ..       1     122 [. 0.84
   2 ?    1.6   0.0       0.1   1.4e+02     135     211 ..      93     169 ..      69     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00085
      ATPase 21 vvlitGepGtGKtifalqFlikgaekygepgvfvtveep 59
                vv  +G+ G GKt+ ++ F    a++ g ++v++ ++  
  EGE24242.1  5 VVVTSGKGGVGKTTTSASFGAGLAKR-GFKTVIIDFDVG 42
                56668**************9888777.*******99875 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.1
      ATPase 135 ekeavaReilrqlvrvlkklgvTailvsekssseeaaggygveefivdgvivLdlkeiee..elvRtleivkmRgtkhs 211
                 +k+a++ e + +++++l++      ++++ +   +   g +++ + +d ++++++ e+++  +  R++ i+  R +k++
  EGE24242.1  93 DKDALTDEGVAKVMKELADDMKFDFIICDSPA--GIERGAQLAMYHADEALIVTNPEVSSvrDSDRIIGILQSRTKKVE 169
                 55555556666666666666666677777444..455677888888999999999999998888999999999998876 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   0.00033      0.45      30      61 ..      10      40 ..       9     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00033
       DUF87 30 gsTGsGKSntvavLleellekkgatililDpH 61
                g+ G+GK++t a+  + l+ k+g +++i+D +
  EGE24242.1 10 GKGGVGKTTTSASFGAGLA-KRGFKTVIIDFD 40
                778****************.**********75 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.3   0.00037      0.51      32      67 ..       6      41 ..       1     122 [. 0.87

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00037
                EEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE-- CS
        MeaB 32 vGltGvPGaGkstlvealglelrrrGkrvavlavDP 67
                v   G  G+Gk t+   +g+ l++rG +  ++  D 
  EGE24242.1  6 VVTSGKGGVGKTTTSASFGAGLAKRGFKTVIIDFDV 41
                4456999**********************9998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2033.57
//
Query:       EGE24243.1  [L=91]
Description: cell division topological specificity factor [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-20   71.3   1.7    5.5e-20   71.1   1.7    1.0  1  MinE      Septum formation topological specificity factor Min


Domain annotation for each model (and alignments):
>> MinE  Septum formation topological specificity factor MinE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   1.7   3.1e-24   5.5e-20       1      68 []      18      88 ..      18      88 .. 0.94

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 3.1e-24
                XXXSSS-EEEEEEE.EES...SS--TTCCHHHHHHHHHHHHHH-...-SEEEEEEE--.-E..EEEEEEEE-- CS
        MinE  1 SaevAKeRLkliLa.hdR..aslspelleqlkeeileviskYve.ideekvevkleke.kedvsvLeaniplk 68
                Sa++AK+RLk+i+a hdR  ++l+++ +eq+k+eil+v++kYv+ ++ ++++++  +e +   ++Le+ni+l+
  EGE24243.1 18 SADIAKDRLKVIVAsHDRlnTRLTADRIEQMKREILAVVNKYVNgVNIDDLNINHRHEdN--LDMLEMNISLP 88
                9*************9****99**********************98999********7734..5*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 701.03
//
Query:       EGE24244.1  [L=71]
Description: 30S ribosomal protein S21 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-21   75.3   7.8    2.1e-21   75.3   7.8    2.0  2  Ribosomal_S21  Ribosomal protein S21


Domain annotation for each model (and alignments):
>> Ribosomal_S21  Ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   7.8   1.2e-25   2.1e-21       1      54 [.       3      56 ..       3      57 .. 0.97
   2 !    8.0   0.5   0.00013       2.3      12      30 ..      51      69 ..      50      71 .] 0.87

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 1.2e-25
  Ribosomal_S21  1 qVvVkdgenierALkrfkrkveragvirevrrrryyekpsekrkrkkkearrrr 54
                   +V+Vk++e+++ A++rfkr +e+agv+++vr+++++ekp+++rkrkk++a +r 
     EGE24244.1  3 SVKVKENEPVDIAIRRFKRACEKAGVLADVRKKEFFEKPTQERKRKKAAAVKRY 56
                   59*************************************************995 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00013
  Ribosomal_S21 12 rALkrfkrkveragvirev 30
                   +A kr+k+kv r+ v+ + 
     EGE24244.1 51 AAVKRYKKKVYREQVRHQR 69
                   699***********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1258  (0.0701657); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 530.45
//
Query:       EGE24245.1  [L=498]
Description: sodium/proline symporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-104  350.7  39.7   1.6e-104  350.1  39.7    1.3  1  SSF       Sodium:solute symporter family
  ------ inclusion threshold ------
      0.083   12.7   4.9       0.11   12.3   0.1    2.9  2  SPC25     Microsomal signal peptidase 25 kDa subunit (SPC25)


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.1  39.7  1.7e-108  1.6e-104       1     406 []      37     435 ..      37     435 .. 0.98

  Alignments for each domain:
  == domain 1  score: 350.1 bits;  conditional E-value: 1.7e-108
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlr.....nagalTlpdylskRfkgkr.ilvylsalsl 93 
                 y+l+gr+l + v++ls++as++s+++++Gl+G ++asG+  ++++lg+++++  ++l++a+rlr       +a+Tlpdy+s+Rf++k+ +l+++sa+++
  EGE24245.1  37 YMLGGRNLSPAVTALSAGASDMSGWLLLGLPGYMYASGVVSIWIALGLTIGACANYLIVAPRLRvytelADNAVTLPDYFSNRFHDKShLLRIMSAVVI 135
                 99*****************************************************************9999***************999********** PP

         SSF  94 llvitlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevGgleslveklkeaapkvvdlltp 192
                 +l++t++ ++ lv+g+kl+e++l l+y++++++ a++++ Yt++GG+lAv++td +q+v+ml++ li++++++ e+Gg+++++  +++ +++v + +++
  EGE24245.1 136 ILFFTVYTAASLVAGGKLFESSLNLSYSMGLWVTAGVVVAYTLFGGFLAVSLTDFVQGVIMLIAMLIVPVVAFGEIGGVSEAMAIATQTNTEVFNWMNG 234
                 *********************************************************************************999999999977777777 PP

         SSF 193 dslkllrdpltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkllpn 291
                  +       + ++sl +++++G++g+phi+vRf+a+ ++k + ++++++++++il lig+++++l +i+++       g e++ ++ ++    + l+ +
  EGE24245.1 235 VT------VMGVISL-MAWGFGYFGQPHIIVRFMAIRSVKDVPTAMVIGMGWMILSLIGALMVGLAGIAYVAR----TGIELKDPETIFLVFSQVLFHP 322
                 77......4777888.*****************************************************9988....899******************* PP

         SSF 292 llaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavlavillalf 390
                 l+ G+lla++lAaimst++s+ll+ ss++t+D+Yk ++ k+ a+e ++v ++ri v+ v+ +ai+la +++++ vl lv+ a+ag+++a++++++l+l+
  EGE24245.1 323 LISGFLLAAILAAIMSTISSQLLVVSSSLTRDIYKLFLDKQ-ASEARQVLIGRISVVLVAIIAIMLAGDSNSS-VLNLVSHAWAGFGAAFGPLVILSLM 419
                 ****************************************9.******************************9.************************* PP

         SSF 391 wkrvneqGAlagliiG 406
                 wkr+n++GAlag+i+G
  EGE24245.1 420 WKRMNRNGALAGMIVG 435
                 ***************9 PP

>> SPC25  Microsomal signal peptidase 25 kDa subunit (SPC25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.2e-05      0.11      58      85 ..       7      34 ..       2      48 .. 0.90
   2 ?    0.3   1.2      0.06   5.3e+02      36      84 ..     145     195 ..     111     201 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.2e-05
       SPC25 58 vlaiavvlYfilsgiltlystfveknti 85
                 ++i +++Yfil++++ +y++f +kn i
  EGE24245.1  7 GVWISLAVYFILMIAIGIYAYFKQKNDI 34
                589**********************977 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.06
       SPC25  36 avaiaavaflydykv.eFeeskpvlaiavvlYfilsgiltlyst.fveknt 84 
                 a+++a++ ++ + +  +++    v+a +vv+Y+++ g l +  t fv++ +
  EGE24245.1 145 ASLVAGGKLFESSLNlSYSMGLWVTAGVVVAYTLFGGFLAVSLTdFVQGVI 195
                 444444444433333477777778888899999999999887775666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1102  (0.0614647); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3446.13
//
Query:       EGE24246.1  [L=223]
Description: 50S ribosomal protein L25/general stress protein Ctc [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-29  101.2   1.0    5.4e-29  100.4   1.0    1.4  1  Ribosomal_TL5_C  Ribosomal protein TL5, C-terminal domain
    5.2e-26   91.0   0.1    1.9e-25   89.2   0.0    1.9  2  Ribosomal_L25p   Ribosomal L25p family


Domain annotation for each model (and alignments):
>> Ribosomal_TL5_C  Ribosomal protein TL5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   1.0     6e-33   5.4e-29       2      85 ..     104     191 ..     103     192 .. 0.95

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 6e-33
                      SEEEEEEEEES..--TTTTTTSEEEESSSEEEEESSTTS--SSEEEE-TT--SSBEEETTTS--SSS-EESS-T....TSEEEEEE-- CS
  Ribosomal_TL5_C   2 vtveVpvhfvgeeespgvkkggvleqvlreveveclpkdlPeeievDvsgleigdsihvsdlklpegvelltdp....devvvsvvap 85 
                      ++++Vpv++++e+ s+g k+gg+l++ ++++ev+clp++lPe+ievDv++l igdsih+sd++lp++v+l+t++    + +++++++p
       EGE24246.1 104 MNFNVPVNIINEDSSVGKKEGGILTILVNDIEVNCLPRNLPEAIEVDVANLAIGDSIHLSDVTLPNEVTLVTHDeadlNRTIATMQPP 191
                      7899******************************************************************997667779999999987 PP

>> Ribosomal_L25p  Ribosomal L25p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   2.1e-29   1.9e-25       2      81 .]       7      95 ..       6      95 .. 0.92
   2 ?   -1.2   0.0      0.33     3e+03      33      58 ..     126     152 ..     105     171 .. 0.56

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 2.1e-29
                    EEEEC..TS.SCCCHHHHHHTTEEEEEEEESSSCEEEEEEEHHHHHHHCH.....CSEEEEEETT..CEEEEEEEEEETTTTCEEEEEE CS
  Ribosomal_L25p  2 kaekR..te.gkgaarrlRregkvPavlyGggkepisisvdakelrkllkt....stlieLevdg..ekvllkdvqrhpvkdkilHvDF 81
                    ++ +R  ++ gkga+rrlR++++vPa++yGg+ e+++i v+++e+ k+l++    s++i++++dg  ++v++k++qrhp k+ +lH+DF
      EGE24246.1  7 NGVARaeSQqGKGASRRLRKDNLVPAIIYGGNDEAVAICVKTNEIVKALSNesffSSVITINLDGaeHEVIIKALQRHPSKGFPLHIDF 95
                    5666754345***************************************778************9888********************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.33
                     EEEEEEEHHHHHHHCH..CSEEEEEET CS
  Ribosomal_L25p  33 pisisvdakelrkllkt.stlieLevd 58 
                      + i v+  e++ l ++  ++ie++v 
      EGE24246.1 126 ILTILVNDIEVNCLPRNlPEAIEVDVA 152
                     445666666666666556555666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1673.27
//
Query:       EGE24247.1  [L=190]
Description: peptidyl-tRNA hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-56  190.9   0.0      2e-56  190.7   0.0    1.0  1  Pept_tRNA_hydro  Peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> Pept_tRNA_hydro  Peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.7   0.0   1.1e-60     2e-56       1     170 [.       5     185 ..       5     186 .. 0.94

  Alignments for each domain:
  == domain 1  score: 190.7 bits;  conditional E-value: 1.1e-60
                      EEEE---SSTCCTTCGGGHHHHHHHHHHHH............TCEEEEEETTEEEEEEEESS-GGGHHHHHHHHHHHCT--..GEEEEEEETTS CS
  Pept_tRNA_hydro   1 livGLGNpgkeYektRHNvGflvvdelakk............aevaegkiegekvlllkPqtymNlsGeavkellkfykieseeilvvhDdldl 82 
                      livGLGNpg +Y++tRHN+Gf++v++la+k            ++v++g+i++++v ll P+t+mN+sG++v+ + kfy i++e+il+ hD+ld+
       EGE24247.1   5 LIVGLGNPGVQYQQTRHNAGFWFVEQLADKfgirlifdkkfhGQVGRGTIHNQEVRLLLPETFMNRSGQSVAPFTKFYGIHPESILIAHDELDI 98 
                      8***************************99999999988888888888********************************************** PP

                      STTEEEEEESS--TT-HHHHHHHHHHT-S-SEEEEEEE---ST-CGGHHHHCTSB-HHHHHC.HHHHHHHHHHCHHHHHHHTSCCHCCC CS
  Pept_tRNA_hydro  83 plgkirlkkkgssgghnGlksiikklgtekfvRlriGIgrpekakkkvadyVLskfskeeek.leevlekaaealeellkeeleaamnk 170
                      p+g+i+lk++g++gghnGlk+i+ ++g  +f+RlriGIgrp++ +++v+ +VLsk s++++  ++++++ a+  ++e++  ++e+a n+
       EGE24247.1  99 PVGSIKLKTGGGHGGHNGLKDIVPHIGA-DFHRLRIGIGRPMH-SSQVSGHVLSKPSTDDRIsITAAIDCAVASIHEIILGDMERARNQ 185
                      **************************98.5************8.668**********99977799999999999999887678888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1404.91
//
Query:       EGE24248.1  [L=469]
Description: coproporphyrinogen III oxidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-16   61.1   0.0    2.7e-16   60.4   0.0    1.4  1  Radical_SAM  Radical SAM superfamily
    2.5e-12   46.7   0.1    1.1e-11   44.6   0.0    2.1  2  HemN_C       HemN C-terminal domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.0   3.1e-20   2.7e-16       2     166 ..      69     241 ..      68     242 .. 0.87

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 3.1e-20
                  EEESEESS--TTTSCCTT....HHHHHHHHHHHHHHHHHHHHHHH.HHTTSEEEEEESSTGGGS........TTHHHHHHHHHHTCCCTEEEEEEECS CS
                  xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpet....vrregrgrslsveeileevkelk.aekgvkevilgggeplly........pdfvellerlaklavpgiritvetng 86 
                  ++ ++C++ C +C +++      ++ g++ +    ei ++   l+ + + vk+++lggg+p++         +df  + +  a +   +++i +   +
   EGE24248.1  69 IHIPFCHHLCYYCGCNKIitkkNSDAGDYLTYLFAEIRHKKSLLRgKTW-VKQLHLGGGTPTFLsddelitlWDFLHEEFLFADE--GDFSIEIDPRE 163
                  6889*************9**99999999999999999999999974444.*************9885555555555555555554..77777777777 PP

                  SCHGHHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET.EEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  87 tlpdeeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr.vvdrivglpGendeeleellel 166
                  ++  +  l+ l++lg++r+s+g++ +d++ v+  +nr +++e + ++++ + ++g+ + ++d i+glp ++ + +++++e 
   EGE24248.1 164 LR--PNTLKILKDLGFNRLSFGVQDLDKK-VQIAVNRVQSLELIQNVMQEAQALGFGStNIDLIYGLPHQTPASMNATIEQ 241
                  77..79***********************.*******************************************99999875 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.54   4.8e+03      28      56 ..     296     324 ..     295     327 .. 0.71
   2 !   44.6   0.0   1.3e-15   1.1e-11       3      65 ..     378     443 ..     377     444 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.54
      HemN_C  28 qrfgld.leellaaaleklqeqGLLeldgg 56 
                 q++g+d +++   +a + +q+qG L  + +
  EGE24248.1 296 QYIGIDhFAKP-DDAMAIAQRQGKLHRNFQ 324
                 67788855555.778888999998877655 PP

  == domain 2  score: 44.6 bits;  conditional E-value: 1.3e-15
      HemN_C   3 pedrleEeiilgLRlreGldlaafeqrfgld....leellaaaleklqeqGLLeldggrlrltprGr 65 
                  +d+l++ +i+ L +++ ++++++++rf +d    ++++ +++l+++q +GL+++d++++   p+Gr
  EGE24248.1 378 DKDALRRHVIMNLLCHDYMSFEDLHARFDIDakeyFANE-IKNLQDMQTDGLVQIDEDGITILPKGR 443
                 69********************************99999.788***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3422.65
//
Query:       EGE24249.1  [L=183]
Description: RDD family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-23   81.0   9.9    1.1e-22   80.7   9.9    1.1  1  RDD          RDD family
  ------ inclusion threshold ------
      0.021   15.5   8.2       0.26   12.0   2.8    2.2  2  PrgI         PrgI family protein
      0.052   13.3   0.6      0.052   13.3   0.6    2.2  2  Claudin_2    PMP-22/EMP/MP20/Claudin tight junction
       0.35   10.6   6.3       0.11   12.2   1.4    2.1  2  Tetraspanin  Tetraspanin family
       0.36   10.8   5.4          1    9.3   1.2    2.2  2  DUF5317      Family of unknown function (DUF5317)
          6    7.4   9.4        1.8    9.1   1.0    2.6  2  PhoR         Phosphate regulon sensor protein PhoR


Domain annotation for each model (and alignments):
>> RDD  RDD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   9.9   3.7e-26   1.1e-22       7     141 .]       3     158 ..       1     158 [. 0.96

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 3.7e-26
         RDD   7 RllAfliDlvllliislllallivall........nakasaneavagslllllllvlllvllvyqllllskkgqTlGklllglkvvdedgrklglaqal 97 
                 Rl+A ++D++l+l++++l+  ++++l         +++++a+    ++++++++ +++l+l+ ++++++ k gqTlG++ ++lk+v+++g  l++ q++
  EGE24249.1   3 RLVAIIYDGMLILAMLFLVGSILAVLGtvlfleigTSSQEAQTLPDWYKNAIMTPSFVLTLVGFYGIFWRKSGQTLGMQTWRLKTVNDQGGLLTWRQSF 101
                 *******************999999879*********************************************************************** PP

         RDD  98 iRalllllllv.............lglslvlllllligflfvlfsrkrqalhDklag 141
                 +R + ++ll               +++ ++++l +l++flf+lf+r+  a+hD+l++
  EGE24249.1 102 VRIISACLLPAlcallgallhgskFAILVATVLGFLFNFLFCLFNRQGLAVHDMLSN 158
                 **887666666*******************************************986 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2    0.0036        11      23      73 ..      18      82 ..      11      91 .. 0.72
   2 ?   12.0   2.8   8.8e-05      0.26      16      80 ..      93     161 ..      86     173 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0036
        PrgI 23 iflvlallvaiglylllrafl.....eelasvlvillavPvaal...gfy....kkdglp..lek 73
                +flv+ +l+++g++l+l+  +     ++l+ +   +++ P ++l   gfy    +k+g++  +++
  EGE24249.1 18 LFLVGSILAVLGTVLFLEIGTssqeaQTLPDWYKNAIMTPSFVLtlvGFYgifwRKSGQTlgMQT 82
                67777777788888888877788888888999999999994444345777666788888744444 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 8.8e-05
        PrgI  16 g.LtlRQliflvlallvaiglylllrafl..eelasvlvillavPvaal.gfykkdglplekylkaiik 80 
                 g Lt+RQ ++ ++ + +  +l+ ll a+l  +++a++++++l + + +l  ++ ++gl + ++l + i 
  EGE24249.1  93 GlLTWRQSFVRIISACLLPALCALLGALLhgSKFAILVATVLGFLFNFLfCLFNRQGLAVHDMLSNTIT 161
                 669****99988888877777777788886777777777776444333235567899988888877765 PP

>> Claudin_2  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   1.7e-05     0.052     124     181 ..      14      66 ..       5      71 .. 0.77
   2 ?    1.4   1.3     0.077   2.3e+02      86     129 ..      95     138 ..      87     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.7e-05
   Claudin_2 124 aagilfllagvlgllavvvfiesvkkvfeesfqqwmqelqnnvrisfgWSfalAvagv 181
                   ++lfl++++l +l++v+f e + +++  ++q++ +++ +n    +  Sf+l  +g+
  EGE24249.1  14 ILAMLFLVGSILAVLGTVLFLEIGTSSQ--EAQTL-PDWYKN--AIMTPSFVLTLVGF 66 
                 4568********************7653..33333.666555..67888888888886 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.077
   Claudin_2  86 lalarfvqvlliLslvlivlavvlgllallkqsvlllkaagilf 129
                 l +++++  ++  +l+ +++a++ +ll   k++ l+ ++ g+lf
  EGE24249.1  95 LTWRQSFVRIISACLLPALCALLGALLHGSKFAILVATVLGFLF 138
                 56777777777778888888888888888888887777777765 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.4   3.5e-05      0.11       6      72 ..      13      73 ..      11      85 .. 0.77
   2 ?    0.9   0.2       0.1   3.1e+02       4      14 ..     134     144 ..      98     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.....................XXXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  6 fffnllfwligivllavGvwlrlkhaeaalacllsesaedpailaillivvGvllfllgflGcigal 72
                 +++++lf++ +i+++   v         +  + ++e ++ p++++++++  +++l l+gf G++   
   EGE24249.1 13 LILAMLFLVGSILAVLGTVLF------LEIGTSSQEAQTLPDWYKNAIMTPSFVLTLVGFYGIFWRK 73
                 688999999999999766554......44555666778899*********************98754 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.1
                  XXXXXXXXXXX CS
                  xxxxxxxxxxx RF
  Tetraspanin   4 llfffnllfwl 14 
                  l f+fn+lf+l
   EGE24249.1 134 LGFLFNFLFCL 144
                  33455555554 PP

>> DUF5317  Family of unknown function (DUF5317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2      0.02        59      17      50 ..      28      66 ..      11      82 .. 0.66
   2 ?    9.3   1.2   0.00035         1      33      98 ..      97     168 ..      78     178 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.02
     DUF5317 17 qlllfvltv.....elleflkklsallsilsylllllfl 50
                   + +l++     e+  +++++++++++ s++l l+++
  EGE24249.1 28 LGTVLFLEIgtssqEAQTLPDWYKNAIMTPSFVLTLVGF 66
                222223332444458888999999999998888877765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00035
     DUF5317  33 klsallsilsyll......lllflllnrklkglllialGvllNflvialNggkMPvslealekaglellell 98 
                 + ++++ i+s++l      ll +ll   k+  l+  +lG+l Nfl  ++N   + v   +++ + l++ ++ 
  EGE24249.1  97 WRQSFVRIISACLlpalcaLLGALLHGSKFAILVATVLGFLFNFLFCLFNRQGLAVHDMLSNTITLKVPKIA 168
                 5555555555443111111566667777777888899*************9988888877776666555555 PP

>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.7     0.032        97      16      51 ..      14      49 ..       2      59 .. 0.73
   2 ?    9.1   1.0   0.00059       1.8       2      42 ..      97     141 ..      96     183 .] 0.67

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.032
        PhoR 16 allvgllvgalaallllalllllawhlyqllrLsrW 51
                +l++ +lvg + a+l  +l+l ++      + L +W
  EGE24249.1 14 ILAMLFLVGSILAVLGTVLFLEIGTSSQEAQTLPDW 49
                235677888888888888888888888888888777 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00059
        PhoR   2 w.rrlllrlallllaal..lvgllvgalaalll.lalllllawhl 42 
                 w ++ +++++++ll+al  l+g+l++  ++++l +++l++l+  l
  EGE24249.1  97 WrQSFVRIISACLLPALcaLLGALLHGSKFAILvATVLGFLFNFL 141
                 655666666666666655588888888888777355555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1351.48
//
Query:       EGE24250.1  [L=265]
Description: phosphomethylpyrimidine kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-62  209.8   0.6    4.5e-62  209.6   0.6    1.0  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    9.1e-09   35.0   0.0    1.3e-08   34.5   0.0    1.3  1  PfkB          pfkB family carbohydrate kinase
     0.0011   18.5   0.1      0.025   14.0   0.1    2.2  1  HK            Hydroxyethylthiazole kinase family


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.6   0.6   7.5e-66   4.5e-62       1     239 [.      17     252 ..      17     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 209.6 bits;  conditional E-value: 7.5e-66
                   ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTCEEEEEE--HHHHHHHHHHHHHTS--SEEEE-S--SHHHHHHHHHHHHH...TTSSEEEE-- CS
  Phos_pyr_kin   1 DssGGAGiqADlktfsalgvygmsvitaltaqntkgvkevhplpaelveaqleavledvkvdavKiGmlasaeiievvaeklkk...ykvpvVlDPV 94 
                   D+sGGAGiqAD++++ a g++++ ++talt+qn+++v +++p+ ++l++aq++avl+d++v+a+K Gm+++ e i +++e ++    +++p+VlDPV
    EGE24250.1  17 DPSGGAGIQADIESIGASGAHAAIACTALTIQNSQKVFGFEPVCHQLLKAQAQAVLDDLPVRAIKSGMMGTLENIIALTELFETctiKHIPYVLDPV 113
                   9******************************************************************************999664545669****** PP

                   -SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEE.EE- CS
  Phos_pyr_kin  95 mvaksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveele.aer 190
                   +va+sg  l + +++++  ++Llp at+itPN+ E++aL+g     ++d+++aak+l ++ga+aVl+k +h + ++  ++ +ly ++++++ +  +r
    EGE24250.1 114 LVANSGGILGDVKTLAQAFSRLLPYATLITPNTHEIRALSG-----QQDLHDAAKALNDQGANAVLVKTSH-DFNTGDIEQFLYINGRIHHTSiVPR 204
                   ****************9999********************9.....89***********************.57788889****7777766661566 PP

                   ---S--BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHCG-BST CS
  Phos_pyr_kin 191 ietknthGtGCtlssaiaaelakgesleeAvkkAkeyvteaikealelg 239
                   ++  + hG+GC+l+s ia++la g+++ +A++ A +++++++ +a +  
    EGE24250.1 205 LT-GEFHGSGCSLASHIAGRLAMGDDIIDAITAADAWIHQTLIHADKPH 252
                   65.**************************************99876655 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   2.2e-12   1.3e-08     161     230 ..     110     180 ..      88     240 .. 0.67

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 2.2e-12
                 EEEEECESSSHH......HHHHHHHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGG CS
        PfkB 161 fdpnlldplgaq......fkeallellaladllkpneeElealtgekledieealaalhklkakgaktvvvtlGke 230
                  dp+l++ +g         ++a+++ll++a+l++pn +E++al+g++  d ++a++al+    +ga+ v+v+ + +
  EGE24250.1 110 LDPVLVANSGGIlgdvktLAQAFSRLLPYATLITPNTHEIRALSGQQ--DLHDAAKALND---QGANAVLVKTSHD 180
                 555555555543566667899**************************..********998...***9999997654 PP

>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   4.2e-06     0.025      58     217 ..      86     243 ..      80     262 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.2e-06
                 TT--HHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHHHS.....--SEEEEEHHHHHHHHTSSCCSCSSSSSS-SHHHHHHHHHHHHHH CS
          HK  58 GtleekaiealkaAvksakevnrPvvlDPVgvgAtelRrelalellkev.....klavikGNasEilslaglelkvkGvDskeaataavaavqkvAqkl 151
                 Gtle+  i al++  ++   +++P vlDPV v+ +      +++l + +     +  +i  N+ Ei +l+g++      D+ +a ++  + +++v +k+
  EGE24250.1  86 GTLEN--IIALTELFETCTIKHIPYVLDPVLVANSGGILGDVKTLAQAFsrllpYATLITPNTHEIRALSGQQDLH---DAAKALND--QGANAVLVKT 177
                 77777..778888888888888899999987765554444444444332111114567778888888887777443...33332222..1222222222 PP

                 TSEEEEESSSEEEEESSEEEEEE-S-G........GGGGSTTHHHHHHHHHHHHHTTBSSHHHHHHHHHHHHHH CS
          HK 152 rvvvvvtGevDvvsdgkkvyklknGte........llgkitasGCllgsvvaaflavkkdkllaaveavllykv 217
                 +     tG+++      + + + nG          l g+  +sGC+l+s +a  la+ +d ++a+ +a ++ ++
  EGE24250.1 178 SH-DFNTGDIE------QFLYI-NGRIhhtsivprLTGEFHGSGCSLASHIAGRLAMGDDIIDAITAADAWIHQ 243
                 21.12233333......22222.222223333333889999***************998888777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1913.18
//
Query:       EGE24251.1  [L=187]
Description: hypothetical protein EA1_07654 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-17   62.8  21.3    2.6e-10   40.6   7.7    2.2  2  YGGT      YGGT family


Domain annotation for each model (and alignments):
>> YGGT  YGGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   5.6   9.2e-11   1.7e-06       1      66 [.      10      78 ..      10      81 .. 0.90
   2 !   40.6   7.7   1.4e-14   2.6e-10       3      68 ..     107     176 ..     105     177 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 9.2e-11
        YGGT  1 slllslyilllilrillsw.pnpfynpiaqflyklTePllapfRrlipggg...iDlSplvallvlqllr 66
                ++++++  +l+++r++++  + + + pia++ y+lT  +++ f r++p +g   i l+++v++l+l++++
  EGE24251.1 10 NMVINFALMLIFVRFMIQLaQIDTNMPIARAAYRLTG-VVDVFARIFPTMGkgrISLAAVVLMLLLYFIN 78
                689**************66*999*************7.669*******656679**************97 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 1.4e-14
        YGGT   3 llslyilllilrillsw...pnpfynpiaqflyklTePllapfRrlipggg.iDlSplvallvlqllrsl 68 
                 +l+l+ + +i++++ s      +++n ++ +l++l eP++apfRr++p++g iDlS+l al+ l ll+++
  EGE24251.1 107 FLQLLRYTMIASAISSLlvvFLNINNSVMFVLMQLPEPIVAPFRRFVPNLGmIDLSFLAALFSLLLLENF 176
                 7999************9999999*************************7666***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1502.44
//
Query:       EGE24252.1  [L=281]
Description: pyrroline-5-carboxylate reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-34  116.0   3.2    1.1e-33  115.5   1.9    1.9  2  P5CR_dimer      Pyrroline-5-carboxylate reductase dimerisatio
    1.4e-15   57.6   1.3    1.9e-15   57.2   0.2    1.7  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00027   20.5   0.9    0.00039   20.0   0.2    1.6  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
    0.00094   18.8   0.0     0.0017   18.0   0.0    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0076   15.3   0.3      0.024   13.7   0.1    1.7  2  PDH             Prephenate dehydrogenase
  ------ inclusion threshold ------
      0.023   14.9   0.1      0.052   13.7   0.1    1.7  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      0.034   14.6   0.0      0.069   13.6   0.0    1.5  1  NAD_binding_7   Putative NAD(P)-binding
      0.034   14.2   0.2       0.13   12.4   0.1    2.0  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.055   13.5   0.1       0.19   11.7   0.0    1.9  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.072   12.7   0.0       0.14   11.8   0.0    1.5  1  PhaC_N          Poly-beta-hydroxybutyrate polymerase (PhaC) N


Domain annotation for each model (and alignments):
>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.7   3.1e+03      78      78 ..     115     115 ..      69     164 .. 0.59
   2 !  115.5   1.9   6.1e-37   1.1e-33       1     103 []     171     273 ..     171     273 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
                 H CS
  P5CR_dimer  78 k 78 
                  
  EGE24252.1 115 S 115
                 2 PP

  == domain 2  score: 115.5 bits;  conditional E-value: 6.1e-37
                 CCHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHCHSHHHHHHHH--TTSHHHHHHHHHHHTTHHHHHHHHHHHHHHH CS
  P5CR_dimer   1 EkqldavtalsGsgpAyvflliealadagvklGlsreeArelaaqtvaGaaklllesepaelrdkvtspgGtTiaglkeleegglraavieaveaaakr 99 
                 E++l+avta++Gs+pAy+f+++e ++  +v++Gls e+A+ la+q+++Gaa+l++e++pa+lr++vts+gGtT+a+l++l ++++ +a+++a++a+ +r
  EGE24252.1 171 ESLLHAVTAVAGSAPAYFFYVLENMIAKAVEMGLSPEDAQTLAVQSMRGAAALAEENNPAVLREQVTSKGGTTAAALDSLYHDNVGDAFARAMQACSDR 269
                 899**************************************************98777***************************************** PP

                 HHHH CS
  P5CR_dimer 100 skel 103
                 s el
  EGE24252.1 270 SFEL 273
                 9775 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.2   1.1e-18   1.9e-15       1      97 []      11     108 ..      11     108 .. 0.90
   2 ?   -2.2   0.1       3.6   6.5e+03      28      47 ..     209     228 ..     193     245 .. 0.56

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 1.1e-18
                    EEEEETTSHHHHHHHHHHHHTTS...-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEE CS
  F420_oxidored   1 kigiiGaGnmgealasgllaaga...qpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvis 93 
                    +i +iG+Gnm++a++ gll+a      +  ++ +++++ +k ++++++  + + + ++ + +e adv+vlavkp+ +++v+ ++ +  l++++v+s
     EGE24252.1  11 TISFIGGGNMAHAIIDGLLQAKNqhnLALTLC-VSDSDDDKQAKFRDKGLIATNPDNAHQIIEGADVLVLAVKPQIMHQVAGSI-APYLQQQTVLS 104
                    599******************96554444556.5599999********99*****999**************************.999******** PP

                    ESSS CS
  F420_oxidored  94 vlag 97 
                    ++ag
     EGE24252.1 105 IAAG 108
                    **97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.6
                    EEEEEESSCCCHHHHHHHHC CS
  F420_oxidored  28 ivvansrnpekaeelaeelg 47 
                        + ++   a++laee +
     EGE24252.1 209 AQTLAVQSMRGAAALAEENN 228
                    32233556666666666655 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   2.2e-07   0.00039       2     100 ..       7     112 ..       6     129 .. 0.82
   2 ?   -2.5   0.0       1.8   3.3e+03     131     153 ..     241     263 ..     197     267 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.2e-07
                 HHTS-EEEES-SHHHHH......HHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEE...EHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-EE CS
        IlvN   2 lkgkkiaviGyGsqGha......qalnlrdsgldvvvglregsksvkkAkeegfevl...tvaeavkkadvvmiliPDelqkevyeeeiepnlkegkal 91 
                 l+gk+i+ iG G+ +ha      qa+n ++  l ++v+  +++ + +k +++g+  +   +++++++ adv+++ +  +++++v   +i+p+l+++++l
  EGE24252.1   7 LNGKTISFIGGGNMAHAiidgllQAKNQHNLALTLCVSDSDDD-KQAKFRDKGLIATnpdNAHQIIEGADVLVLAVKPQIMHQVA-GSIAPYLQQQTVL 103
                 899*********9988855555578888888888888887777.555667778765511156677899********99*****99.99*********** PP

                 EESSSHHHH CS
        IlvN  92 afahGfnih 100
                 + a G++i+
  EGE24252.1 104 SIAAGLSIQ 112
                 ******996 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
                 T----EEEEEEE-SSS-HHHHHH CS
        IlvN 131 gkGvpaliaveqdasgkakelal 153
                 g+   al ++++d+ g+a++ a+
  EGE24252.1 241 GTTAAALDSLYHDNVGDAFARAM 263
                 33334555666666666666665 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   9.5e-07    0.0017      37     107 ..      33     111 ..      12     131 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9.5e-07
                 HHHCEEEEETT......CEEEEEECEEECCH...SCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEEEEESSSSCH CS
        ApbA  37 kknGlrltseg......geeilrppealsae...ekselepidlvivtvKayqteealeeikplldpntvvlllqNGlgh 107
                 ++++l lt +       ++ ++r++  +++    + + +e +d+++++vK + + +++ +i+p+l+++ +vl++  Gl  
  EGE24252.1  33 NQHNLALTLCVsdsdddKQAKFRDKGLIATNpdnAHQIIEGADVLVLAVKPQIMHQVAGSIAPYLQQQ-TVLSIAAGLSI 111
                 344444433332222334444444444444466667889****************************8.99999888765 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.3e-05     0.024      13      75 ..      40     103 ..      29     117 .. 0.87
   2 ?   -1.0   0.0       0.4   7.2e+02     164     215 ..     177     232 ..     155     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                 EEEEE-SSHHHHHHHHHTTSSSEEES-.GGGGCCGSEEEE-S-GGGHHHHHHHHHHHS-TT-EE CS
         PDH  13 tvigydideekaeaalelglvdeatdd.ieavkeadivvlavPvevilevlkelaphlkedali 75 
                 t+   d d+ k+++ ++ gl+ +++d+  + ++ ad+ vlav ++ + +v+  +ap l+++ ++
  EGE24252.1  40 TLCVSDSDDDKQAKFRDKGLIATNPDNaHQIIEGADVLVLAVKPQIMHQVAGSIAPYLQQQTVL 103
                 5667899999999999********99977888999*********************99998775 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.4
                 HHHHHTHHHHHHHHHHHHHHH...CHHCCCCHHHHCGTCCHHHHHCGGG.S-HHHH CS
         PDH 164 vvavvshlphvvaialaatlk...ekkndekeirklasggfrdvtRiak.snPelw 215
                 v+av   +p   ++ l ++++   e++   ++++ la ++ r +  +a+ +nP++ 
  EGE24252.1 177 VTAVAGSAPAYFFYVLENMIAkavEMGLSPEDAQTLAVQSMRGAAALAEeNNPAVL 232
                 55566666666666666655544588888899999999998888877651456655 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.9e-05     0.052       1      86 [.      11     103 ..      11     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.9e-05
                    EEEEE--SHHHHHHHHHH......HHTT-EEEEE-SSHHHHHHHHHTT..EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EE CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnl......lkagykvavynrtkekveelvaeg..akaaesieelvasldvvitmvkagkavdeviegllealkkgdil 86 
                    +i fiG G+M + ++  l       +   +++v + + +k  ++ ++g  a+  +++ ++++++dv ++ vk  + + +v  +++++l+++++l
     EGE24252.1  11 TISFIGGGNMAHAIIDGLlqaknqHNLALTLCVSDSDDDKQAKFRDKGliATNPDNAHQIIEGADVLVLAVKP-QIMHQVAGSIAPYLQQQTVL 103
                    589*******999988883311113334568899**************7667777888999999*99999975.899999999*****999987 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.8e-05     0.069       5      78 ..       7      89 ..       4     107 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.8e-05
  NAD_binding_7  5 lkgkkvlvvGgGevAarkvrklleagakvtv.....vapevkeele........elvklaeeelekdlegadlviaatddrelneri 78
                   l+gk++  +GgG++A   +  ll+a+ +  +     v+       +        +l+  +++++++ +egad+++ a+ ++++ +++
     EGE24252.1  7 LNGKTISFIGGGNMAHAIIDGLLQAKNQHNLaltlcVSDSD---DDkqakfrdkGLIATNPDNAHQIIEGADVLVLAV-KPQIMHQV 89
                   7899********************98554443343444442...122344556688888999999*******999998.45555554 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     7e-05      0.13       7      84 ..       4      82 ..       1     105 [. 0.80
   2 ?   -0.8   0.0      0.79   1.4e+03       2      31 ..      89     118 ..      88     125 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7e-05
                  HS..TT-EEEEES-SHHHHHHHHHHHCC.T-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SS CS
  Shikimate_DH  7 leslkekkvlliGaGemaelvakhLlak.gvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisata 84
                  ++ l++k++  iG G+ma+ ++  Ll++ + ++++ +    +  ++   +++++ + a++ ++ +++++ adv++ a++
    EGE24252.1  4 FSMLNGKTISFIGGGNMAHAIIDGLLQAkNQHNLALTLCVSDSDDDKQAKFRDKGLIATNPDNAHQIIEGADVLVLAVK 82
                  67899*****************998876255556666666666666777788888899999999999999999999876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.79
                   HHHHHHS..TT-EEEEES-SHHHHHHHHHH CS
  Shikimate_DH   2 lakkkleslkekkvlliGaGemaelvakhL 31 
                   +a ++++ l++++vl i aG  ++ + ++L
    EGE24252.1  89 VAGSIAPYLQQQTVLSIAAGLSIQALSHML 118
                   57788889999********98887665554 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.9   3.4e+03     127     141 ..      12      26 ..       6      36 .. 0.62
   2 ?   11.7   0.0   0.00011      0.19      62     106 ..      66     109 ..      55     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.9
                     EEEEESS--HHHHHT CS
  NAD_Gly3P_dh_N 127 vavlsGpslAeEvak 141
                     ++++ G ++A+ +++
      EGE24252.1  12 ISFIGGGNMAHAIID 26 
                     556666666655554 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
                     -HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT-EEEE---SE CS
  NAD_Gly3P_dh_N  62 dlaealkgadiivlvvPsqalrevlkklkgllkkkailvsliKGi 106
                     + ++ ++gad++vl+v  q++++v+ +++++l+++ +++s++ G+
      EGE24252.1  66 NAHQIIEGADVLVLAVKPQIMHQVAGSIAPYLQQQ-TVLSIAAGL 109
                     567889**************************665.556666676 PP

>> PhaC_N  Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.8e-05      0.14      40     118 ..     204     278 ..     180     281 .] 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.8e-05
      PhaC_N  40 ldektrerveflvrqlldalaPsnflatnpevlkelleseGeslvkGlenlleDlergkgelkisqtdesafevGknva 118
                 l++++ + ++  + + ++ala  n    np+vl+e + s+G   ++ l+ l +D    +    ++ + +++fe+G++ +
  EGE24252.1 204 LSPEDAQTLAVQSMRGAAALAEEN----NPAVLREQVTSKGGTTAAALDSLYHDNVGDAFARAMQACSDRSFELGQTFS 278
                 455555555555555555555554....9*************************9999888999999********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2398.55
//
Query:       EGE24253.1  [L=451]
Description: tRNA(Ile)-lysidine synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-44  149.7   0.6      1e-43  149.2   0.1    1.5  2  ATP_bind_3  PP-loop family
    6.2e-11   42.6   0.3    6.2e-11   42.6   0.3    2.3  2  TilS        TilS substrate binding domain


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   0.1   1.1e-47     1e-43       2     181 ..      24     207 ..      23     208 .. 0.94
   2 ?   -3.6   0.1      0.88   7.9e+03      32      52 ..     297     317 ..     278     331 .. 0.55

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 1.1e-47
                 EEEE--SCHHHHHHHHHHHHHCTTTTT..EEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--HHHCTTSTCCCHHHHHHHHHHHHCHHCCT.C CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgi..klvaihvdhglreeskeeaelvkelckklnikleiekvdvakkkgknleeaARelRYevlkealkkegie 98 
                 + +A SgG DS+aL ++   l ++ +i    +++hv+hg ++  +++++lv++++ +++ +++i ++++a    kn e+ AR++RY+++  ++++   +
  EGE24253.1  24 LYLACSGGRDSLALAYACFLLYRQGKIirLPTILHVHHGWQAANDAWMQLVHRWAIEHGFDCQILRITLA----KNSETHARDARYQAFGLVMNQG--D 116
                 679*************9999999888877889************************************65....589****************888..* PP

                 EEE---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEE........TTCCEE-CCCT--HHHHHHHHHHTT---B--CGGGCTTSHHHHHHH CS
  ATP_bind_3  99 vlllAhhadDqaEtfllrlargsglaglagikeasei........asirlvRPlLkvskeeleeylkekkikwveDesNadekyeRnriRk 181
                 vl+lAhha+DqaEt+l+rl  g+gl+gl+g+k  +          ++i+l+RP+Lk+ +++++++++ + +++v+D +N+d +y R riR+
  EGE24253.1 117 VLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKtvhtdeaaKTITLWRPWLKILRDKISQFANAHALPYVDDITNTDPAYARGRIRQ 207
                 *******************************9877667899999888*******************************************8 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.88
                 EEEEE-SSSTCHHHHHHHHHH CS
  ATP_bind_3  32 aihvdhglreeskeeaelvke 52 
                   +++   r+  ++ ++lv++
  EGE24253.1 297 QQVIEMICRQDNDHSSQLVWQ 317
                 333344444444444444444 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.26   2.3e+03      25      55 ..      47      75 ..      42      89 .. 0.61
   2 !   42.6   0.3     7e-15   6.2e-11       2      67 .]     263     333 ..     262     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.26
                TT..TT--HHHHHHH.HHHHH.H-S-SEEEEE- CS
        TilS 25 lg..lpmpsaahLeellrqlllaaedaqpqldl 55
                +g  +++p+ +h++  ++    aa+da +ql +
  EGE24253.1 47 QGkiIRLPTILHVHHGWQ----AANDAWMQLVH 75
                555556666666666666....66666555544 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 7e-15
                 -HHHHHHS-HHHHHHHHHHHHHHTTTT--HHHHHHH.HHHHH.H-S-SEEEEE-S..T...EEEEETTEEE CS
        TilS   2 siaaLaaLsparqrrlLRrWLaqlglpmpsaahLeellrqlllaaedaqpqldlp..g...evrRyrgrLy 67 
                  i+++++Ls++ q+ +L+rWL++  +++ps++  +++++ ++  ++d++ ql ++  +   ++++y+++Ly
  EGE24253.1 263 GIKDFLNLSKSEQALVLHRWLQADEALPPSHQLTQQVIEMICRQDNDHSSQLVWQaeQaayVMCCYDDCLY 333
                 6899********************************88888889999********9648899********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3773.89
//
Query:       EGE24254.1  [L=265]
Description: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-44  150.1   0.1    7.5e-44  149.1   0.0    1.6  2  ACCA            Acetyl co-enzyme A carboxylase carboxyltransf
    1.1e-20   73.8   0.1    1.3e-20   73.6   0.1    1.0  1  Carboxyl_trans  Carboxyl transferase domain


Domain annotation for each model (and alignments):
>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.0   8.3e-48   7.5e-44      53     144 .]       4      95 ..       1      95 [. 0.98
   2 ?   -3.8   0.0       1.2   1.1e+04      89     110 ..     120     141 ..     115     146 .. 0.66

  Alignments for each domain:
  == domain 1  score: 149.1 bits;  conditional E-value: 8.3e-48
        ACCA  53 pwqkvqlaRhpeRpktldyiealfedfvelhGDrafadDkAivgglarlegqpvmvigqqKGrdtkerlkrnfGmakPeGYrKAlrlmklAe 144
                  wq vqlaRh++Rp +ldy++ lf++f elhGDrafadD+Ai+gglar++gqpv+v+gq++Gr+t+er+++nfGma+PeGYrK +rl++lAe
  EGE24254.1   4 VWQSVQLARHAKRPLFLDYVDSLFDEFDELHGDRAFADDRAIIGGLARFNGQPVLVVGQHRGRSTRERIAHNFGMANPEGYRKIIRLVQLAE 95 
                 6******************************************************************************************8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.2
        ACCA  89 adDkAivgglarlegqpvmvig 110
                 ++ +Ai   +a ++  +  +i+
  EGE24254.1 120 GQAEAIAKSIAVFSSLKTPIIA 141
                 5667888888888776666655 PP

>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1   1.4e-24   1.3e-20     272     436 ..      29     196 ..      17     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.4e-24
                     C-EEESTTSS....TTEEEEEEEETTEEEEEEEE--S........EEETTEE-HHHHHHHHHHHHHHHHTT--EEEEE-BSEE--SHHHHHTTHH CS
  Carboxyl_trans 272 eFlEikegyA....ktvVvGfArlgGipvGvvAnetr........veaGqvlfidsavKaarfirlcdaenlPlviladvrGflvGqrqeyggil 354
                     eF+E++ + A    + ++ G+Ar++G+pv vv++ +         ++ G +  +++  K  r ++l +++ lP+++++d+ G  +G  +e+ g +
      EGE24254.1  29 EFDELHGDRAfaddRAIIGGLARFNGQPVLVVGQHRGrstreriaHNFG-MANPEGYRKIIRLVQLAERFGLPVFTFIDTQGAYPGVGAEERGQA 122
                     6777776655445457999****************99************.********************************************* PP

                     HHHHHHHHHHHT--S-EEEEE-TEEEHHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHHHHHHHHHHHHH CS
  Carboxyl_trans 355 khGaklvdalaeakvPkitvilrkayGGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaaemerkdlaaer 436
                      ++ak ++ ++++k+P+i  +++++  G+ ++++ +++ +    + +++  +V+ peg ++il++++++a+++     +a +
      EGE24254.1 123 EAIAKSIAVFSSLKTPIIATVIGEGGSGGALAIGVADRVN----MLENSIYSVISPEGCASILWKTAEKASDAS----EALK 196
                     **********************************997777....455899***************999888743....3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2315.28
//
Query:       EGE24255.1  [L=516]
Description: exopolyphosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-76  256.6   0.6    7.6e-76  255.3   0.5    1.7  2  Ppx-GppA       Ppx/GppA phosphatase family
    0.00012   22.4   0.1      0.067   13.6   0.1    3.5  2  FtsA           Cell division protein FtsA
  ------ inclusion threshold ------
      0.024   14.6   0.0       0.05   13.6   0.0    1.5  1  Peptidase_C33  Equine arterivirus Nsp2-type cysteine proteina


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.3   0.5   1.3e-79   7.6e-76       5     284 ..      47     325 ..      43     326 .. 0.98
   2 ?   -1.8   0.0      0.27   1.6e+03     228     274 ..     465     511 ..     458     514 .. 0.82

  Alignments for each domain:
  == domain 1  score: 255.3 bits;  conditional E-value: 1.3e-79
                 ECTTEEEEEEEEEEE--CCCCCHCCSSC-HHHHHHHHHHHHHHHHHCCCTTGCCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHHHHHH CS
    Ppx-GppA   5 kaagllqivarekrkvrLaeglnesgrlqeeaiertisaLkefaellqkfkvenvrvVATsalRdavNadeFlarvkkevglkveiisgeeEarliylg 103
                  + g +  va+  +kv+La+gl+ +++l++e+++r+i++L +fa+ +++++++++r+VAT+alR+avNa eF++ +++ ++ ++eiisg eEarliylg
  EGE24255.1  47 LDHGEVRKVASISEKVQLAAGLDDNNQLSKEVMQRGIECLHRFAQHITEVQPSRLRIVATNALRKAVNAAEFIQYANEILPKPIEIISGREEARLIYLG 145
                 5667788999***************************************************************************************** PP

                 HHHHT---SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCEHHCCCCCCCHCCHHCHHH CS
    Ppx-GppA 104 vvssllekgrglviDiGGGStElvlgeekevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkegewtrlvgtsgtisalael 202
                 v +s  ++ + lviDiGGGStE ++g+++e+ +++Sl++G+v+ t++f+ d+ +t+++++ a k  + el ++++ ++k g w+ ++g+sgti+a+  +
  EGE24255.1 146 VSHSNASTDKRLVIDIGGGSTEFIIGQGFEPIEMESLQMGCVSYTKKFFGDGKITERAFDKAAKHTRSELLTIAKRYQKVG-WDNAIGSSGTIKAARLV 243
                 *****888888**********************************************************************.***************** PP

                 HHHCT.SSCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES--HHHHHHHHHHHH CS
    Ppx-GppA 203 telhgekgyeitaeeleeliekllqlkkeeelklagvsdeRadvivagalilsavlealeieaviisegalrEGvlyslllk 284
                  ++ g  g++it + +++l + l++l + ++  ++gv++ R +v++ag++ l+++++ l+i+++ +s+galrEGv+y++l +
  EGE24255.1 244 LAELGFGGESITIQSMQKLKKHLIKLGSVDKIDFDGVKAHRQAVFPAGVAQLLEIMQTLKIDELGYSDGALREGVMYDMLGR 325
                 *****99************************************************************************975 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.27
                 SSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES--HH CS
    Ppx-GppA 228 lkkeeelklagvsdeRadvivagalilsavlealeieaviisegalr 274
                  +k + l l  v+++  +v v+ +l  + +++ le++  +++++++r
  EGE24255.1 465 TTKAATLDLYSVTPDHWQVTVGEGLHKELIITQLEQDVAQFAKWGVR 511
                 555677778888888888888888888999999***********999 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0     0.008        48       3      55 ..      33     121 ..      31     142 .. 0.63
   2 !   13.6   0.1   1.1e-05     0.067       2      44 ..     158     207 ..     157     443 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.008
                 EEE-SSSEEEEEEETTE..EEEEEEES-.........-HHHHHHH...........................HHHHHT--HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx..xxxxxxxxx.........xxxxxxxx...........................xxxxxxxxxxxxxxxxxxx RF
        FtsA   3 vDiGagktdvavaedga..lvhlrvigv.........ggngitkd...........................iakalrtaveeAerikiky 55 
                 +D+G+++  +a+++ ++  ++++++i             n+++k+                           + +alr+av++Ae i   y
  EGE24255.1  33 IDLGSNSFHLAIGRLDHgeVRKVASISEkvqlaagldDNNQLSKEvmqrgieclhrfaqhitevqpsrlrivATNALRKAVNAAEFIQ--Y 121
                 7888888888887765433444444443444444444333333335555566666666666666888888888899999999999887..3 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.1e-05
                 EEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHH.......HHHHHT-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxx RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigvggngitkd.......iakalrta 44 
                 ++DiG+g+t+++++++ +++ ++++++g    tk        +++a+ +a
  EGE24255.1 158 VIDIGGGSTEFIIGQGFEPIEMESLQMGCVSYTKKffgdgkiTERAFDKA 207
                 8**************************99999988888777744444333 PP

>> Peptidase_C33  Equine arterivirus Nsp2-type cysteine proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.4e-06      0.05      17      91 ..     418     492 ..     408     505 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.4e-06
  Peptidase_C33  17 ailnrivndkfttkltelsrdsddwlsdedlvqlvqilrlpatlvrngacpsakykl.klegehwtvtvrkGrals 91 
                    a++ + +  +   kl   +r++ + l    lv l  ilrl a   + ++  +a+  l  ++ +hw+vtv +G   +
     EGE24255.1 418 AMMAQ-IARHHRRKLKADARETVENLGGCKLVYLCLILRLAAQSSQSRTTKAATLDLySVTPDHWQVTVGEGLHKE 492
                    44444.4556778999999*****************************999999887356789******9996554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3608.85
//
Query:       EGE24256.1  [L=35]
Description: hypothetical protein EA1_07679 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       179  (0.00998383); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 268.87
//
Query:       EGE24257.1  [L=382]
Description: RluA family pseudouridine synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-30  106.8   0.1    2.2e-30  105.9   0.1    1.4  1  PseudoU_synth_2  RNA pseudouridylate synthase
    2.1e-07   30.6   0.1    4.3e-07   29.5   0.1    1.6  1  S4               S4 domain
  ------ inclusion threshold ------
       0.12   12.9   3.7       0.22   12.0   3.7    1.5  1  SspP             Small acid-soluble spore protein P family


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.1   3.6e-34   2.2e-30       2     160 .]     152     311 ..     151     311 .. 0.91

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 3.6e-34
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      l+v+nKP+g++v+++       e+   +++ r    kk+l l+hR+Dk+tsGlll+Ak + +++ l+++f++++++K+Yl+lv g+   +e  i
       EGE24257.1 152 LIVLNKPHGMAVHGGS-----GESFGIIEAMRLAMGKKYLELIHRIDKDTSGLLLIAKKRSTLKILQEQFRKKTIQKRYLCLVMGHVQADEMVI 240
                      79**************.....77777777788889************************************************98888888888 PP

  PseudoU_synth_2  96 kkkiskd.......tekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhlaa 160
                      + ++ +         +k    + +++++ +k + t++k+l ++ ++ +++vslv   + tGr+hQiRvh+a+
       EGE24257.1 241 DVPLLRYtlangerRVKVAHLNEQKAGEYAKASLTKIKTLLRF-KKDGCPVSLVLAMPATGRTHQIRVHMAH 311
                      8888877888887777777888888889999999999999999.9*************************97 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   7.2e-11   4.3e-07       1      48 []      72     118 ..      72     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 7.2e-11
                 EEHHHHH.HHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4   1 rRLdkvl.arlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48 
                 +R d++l arl+  + r++ ++lI+   +++NGk++k + +++  gDv+
  EGE24257.1  72 QRVDNFLlARLKGLP-RSHLYKLIRSDEIRINGKRCK-AHDKLYMGDVV 118
                 69*****66666666.*********************.****9999997 PP

>> SspP  Small acid-soluble spore protein P family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.7   3.7e-05      0.22       8      41 ..      14      48 ..       9      51 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.7e-05
        SspP  8 kdirknspkgknp.gQPePLsGSkKvKnrNhsrQk 41
                k++++ ++++k +  QP P++ SkK K++ +s Q+
  EGE24257.1 14 KNVKTMKNLQKTSkKQPFPIDLSKKSKRAKQSVQQ 48
                677888899999989*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2790.59
//
Query:       EGE24258.1  [L=1164]
Description: ribonuclease E [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-93  311.0   0.1    6.9e-93  311.0   0.1    2.9  3  RNase_E_G  Ribonuclease E/G family
    1.1e-12   48.1   0.8    4.8e-12   46.0   0.0    2.5  3  S1         S1 RNA binding domain


Domain annotation for each model (and alignments):
>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.0   0.1   7.7e-97   6.9e-93       1     269 [.     118     387 ..     118     388 .. 0.98
   2 ?   -2.8   1.9      0.38   3.4e+03      19      61 ..     639     685 ..     632     759 .. 0.71
   3 ?   -0.6   2.5     0.081   7.3e+02      29     118 ..     995    1086 ..     954    1116 .. 0.60

  Alignments for each domain:
  == domain 1  score: 311.0 bits;  conditional E-value: 7.7e-97
   RNase_E_G   1 slaGrylVllpegkk.vgvSkkiedeeererlkelleelk.peevGlIvRtaaegaseeelekdleelkkkweeilekakkrkapsllyeeedlllrvl 97 
                 slaGrylVl+p++ k  g+S++i+  + re++k++++ l+ p+++++IvRta+ g+ +++l++dl++l + w++i+e+ kkr +p l+++e+ +++r++
  EGE24258.1 118 SLAGRYLVLMPNNPKaGGISRQISG-KVREEMKQIIAGLNlPKNMSVIVRTAGLGKGADDLQNDLDHLLDIWKSIQEQNKKRPSPCLVHQEAGVVTRAV 215
                 89*********665559********.77********9999999******************************************************** PP

   RNase_E_G  98 rdllnedieeivvddkelyeeikeyleevapeleekvelyeeeeplfelysiekqiekalsrkvwlksGgylvIeqTEAltvIDVNsGkftgkknleet 196
                 rd+l++di e+++d +++y+e+ ++++ v+p++ +k++ y++ ep+f++++ie+qie+a++r+v l+sGg++vI+qTEAl++ID+Ns k+t+ ++  et
  EGE24258.1 216 RDYLRDDIGEVWIDGENAYDEAANFIKAVMPTQLSKLRKYTDYEPMFARFGIERQIETAYQREVRLPSGGSIVIDQTEALVAIDINSSKSTKGSDVAET 314
                 ****************************************9999******************************************************* PP

   RNase_E_G 197 vlktNleAaeeiarqlrLRnlgGiIviDFIdmkeeenreevleelkealkkDraktqvleitklgLveitRkr 269
                 +++tNleAa+eiarqlrLR++gG+IviDFIdm+++++++ v ++l ea+++Dra++q++ei+k+gL++++R+r
  EGE24258.1 315 AYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDPRHQKDVEKRLIEATRHDRARVQFSEISKFGLMQMSRQR 387
                 ************************************************************************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.38
   RNase_E_G  19 Skkiedeeererlkelleelk....peevGlIvRtaaegaseeelek 61 
                 S+k ++++++er ke   + +     e+ G IvR +  +++ee+ ek
  EGE24258.1 639 SEKTDKKTKKERDKEQYPKREagsrRESRGEIVRGETLHKTEEKAEK 685
                 55666665565555555333334437788999999998888887654 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.081
   RNase_E_G   29 erlkelleelkpeev.GlIvRtaaegaseeelekdleelkkkweeilekakk.rkapsllyeeedlllrvlrdllnedieeivvddkelyee 118 
                  ++l ++ +++++++  ++   t a+++  + + + +++ + ++++++++a+  + +++ l +++++  +  +d   ++i+ei+ d+k + ++
  EGE24258.1  995 SQLSKADDAVEHQTNdAIDATTLAAEQISDSIGDTISKTMADISTVVSEAADdTAKMADLDTHNQVKPESGKDKKVSQIKEITADQKTERKT 1086
                  44444444444332203334455666666666666666666666666666332445666666666777777777777777777776554333 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   5.3e-16   4.8e-12       2      73 ..      36     114 ..      35     116 .. 0.97
   2 ?   -2.5   0.1      0.75   6.8e+03      28      61 ..     335     373 ..     331     377 .. 0.62
   3 ?   -1.9   0.0      0.49   4.4e+03      26      50 ..     713     734 ..     711     738 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 5.3e-16
                 STTTCEEEEEEEEEET..TEEEEEETTTEEEEEEGGGSSSS.....CEESCHHHCEETTEEEEEEEEEEETTTTEEEEE CS
          S1   2 pekgevveGeVtsvtk..gGafVelgngvegfvpaselsrd.....arvedpdevlkvGdevkvkvlkvdkdrrriils 73 
                 ++k ++++G +t+v++  ++afVe+g   +gf+p+ e++ +      + +++++ +k+Gde+ v+v+k ++ +++++ls
  EGE24258.1  36 QKKANIYKGHITRVEPslEAAFVEYGSARQGFLPLREIAPEylngnTHEDSIKQLIKEGDEIIVQVEKEERGNKGAALS 114
                 789******************************************999****************************998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.75
                 EEEEEEGGGSSSS.....CEESCHHHCEETTEEEEEEEE CS
          S1  28 vegfvpaselsrd.....arvedpdevlkvGdevkvkvl 61 
                 + g++ +  ++++     ++ve++  + + +d+ +v+  
  EGE24258.1 335 MGGLIVIDFIDMNdprhqKDVEKRLIEATRHDRARVQFS 373
                 667888888888876555555555555555666666554 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.49
                 TTEEEEEEGGGSSSSCEESCHHHCE CS
          S1  26 ngvegfvpaselsrdarvedpdevl 50 
                 n+ e+ +++s++++    e++++v+
  EGE24258.1 713 NPKEVVLHVSSIKAA---ENNTQVI 734
                 688999******987...7777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1749  (0.0975515); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.19u 0.34s 00:00:01.53 Elapsed: 00:00:00.48
# Mc/sec: 7221.00
//
Query:       EGE24259.1  [L=77]
Description: hypothetical protein EA1_07694 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.06   13.3   0.1      0.076   13.0   0.1    1.2  1  EF_assoc_2  EF hand associated


Domain annotation for each model (and alignments):
>> EF_assoc_2  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   4.2e-06     0.076      37      59 ..       9      31 ..       5      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-06
  EF_assoc_2 37 nklfiekGrhettWtvLrkFgYd 59
                +++f++k  he+tW     Fg++
  EGE24259.1  9 HQIFAQKKHHESTWCFFLYFGFK 31
                89***************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 591.28
//
Query:       EGE24260.1  [L=720]
Description: malate synthase G [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     3e-158  527.4   0.3   3.6e-158  527.1   0.3    1.0  1  Malate_synthase  Malate synthase


Domain annotation for each model (and alignments):
>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  527.1   0.3    2e-162  3.6e-158       2     526 .]      19     692 ..      18     692 .. 0.97

  Alignments for each domain:
  == domain 1  score: 527.1 bits;  conditional E-value: 2e-162
                      CCCCHHTHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHS.........HHHCCTCCCH-TSS---S-............. CS
  Malate_synthase   2 dfvkeevleaaeilteealefvaelvrdltprrrelLeeRdelqaeidkgeln.........dflketkylreepewktat............. 73 
                      df ++e+l+ a+++++  ++++ ++v +ltp++++lL++Rdelqa+id++++          +fl+e++yl +e  ++t t             
       EGE24260.1  19 DFIENEALPIAKLDSDTYWRNFEQVVLELTPKNKALLAHRDELQAQIDNWHKShvyelgaykQFLSEIGYLEPEVADFTITtenvdeeiatmag 112
                      689999*********************************************6569******9999********9999995559*********** PP

                      .............................................................................................. CS
  Malate_synthase  74 .............................................................................................. 73 
                                                                                                                    
       EGE24260.1 113 sqlvvpvrnaryclnaanarwgslydalygfdiiaetdgaekgkgynpvrgakviafaknfldetfplvdgshadvisyaikdgqlsanmgksw 206
                      ********************************************************************************************** PP

                      ...........................EECCCCE-TCCCCCCC-CCHCCCCCCCSSSEEEEESSTTS--...........HHHHHHCCHHCCCH CS
  Malate_synthase  74 ...........................lhielqdrrveiiGkadrkmiinalnesaittiaDfEDsvap...........nwenlvkGqlnled 129
                                                 lh  +q+++ +iiGk+d+++++++l+esa tti D EDsva+           nw +l+kG+l +  
       EGE24260.1 207 stltenkvvgyngvpdnpseiilknngLHVIIQIDPHSIIGKDDKAGVKDILLESAVTTIQDLEDSVAAvdaeekvegyrNWLGLMKGDLSETL 300
                      ********************************************************************************************** PP

                      CCTTT-EEEET-TSEEEEETTS....ESSSSEEEEE---TTTEEEEEECTTCEEEHHHHHH....HHHH..HHHHHHCSCCTTSSEEEEE-S-S CS
  Malate_synthase 130 avrgrisfrkenkdksYklndg....legrsllfvRnrGwhltekhilvdGeeisegilDf....glif..fhnakelklsrgggpyivlPKme 213
                      +++g++++r++n+d++Y+  +g    l+grsl++ Rn+G+++t+++ilv Geei+eg++D+     l++  + + ++l++sr+g++yiv+PKm+
       EGE24260.1 301 EKNGKTITRTLNADRTYTDLNGntqtLHGRSLMLLRNVGHLMTNPAILVGGEEIFEGMMDAlitpMLCAidIRGENTLRNSRTGSMYIVKPKMH 394
                      *****************988778999*************************************995665115677777**************** PP

                      SHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCTTTTEEEEEE-CHHHHHHHHHHTCCCCGCB...CGGGGCCSHHHHHH CS
  Malate_synthase 214 gpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyelrdrvaglNcGrlDyifseiktlreagdmvLPdRkavtktapfikaY 307
                      g+qE+a+++e+Fs ae+++glp++++k+++++E++r+s nl+++i+++ +r  ++N+G++D++++ei+t ++ag++v   Rk   k++ + +aY
       EGE24260.1 395 GSQEVAFAAELFSCAEKAIGLPKNSLKMGIMDEERRTSANLKNCIAQAYERTIFINTGFMDRTGDEIHTAMHAGAFV---RKGEIKEQIWFHAY 485
                      *****************************************************************************...************** PP

                      HHHHHHHHHHTT.CCCCCCCTCSEECCCEHHHCCCHHHHHHHCHHHHHCT-SEEEESSHHHHHHHHHHHHHCHCHCHHCCHHTTTHHHHHHHHC CS
  Malate_synthase 308 ekllvktchkrgvhamgGlaakipikkdmeaneellekvredKlrevraGadgaWvahPtlatlaaevfeevdvapnQielakeevritaddLl 401
                      ek++v +      ++ +Gl++k++i+k+m+   + l+++++ K++ ++aGa  aWv++P+ a ++a ++++ +v++ Q ela+     ++ddLl
       EGE24260.1 486 EKRNVLI------GLNAGLRGKAQIGKGMWPKPDELADMYRTKIEHPQAGASCAWVPSPSGAVIHAIHYHKCNVTKRQEELARLA-IPSLDDLL 572
                      *******......********************************************************************9884.778***** PP

                      S.--BB.......HHHHHHHHHHHHHHHHHHHHHH.CT-SS..EEETT...EEESHHHHHHHHHHHHHHHHTTSC-CCHSHCHHHHHHHHHHHH CS
  Malate_synthase 402 tkipea.......eeteeglrnnvqvglqYvvaWl.rgvGc..vpiih...LmEDaATaeiSrqqlaqWirhgvvlkeqgvkvslelmaklvde 482
                      t i+ a       e+++ +l+nn+q +l+Yvv+W+  gvGc  vp+i+   LmED+AT++iS+q++a+W+ hg+v+ ++ v   l +mak+vde
       EGE24260.1 573 T-IALAtdtnwtaEQKRRELENNCQGILGYVVRWVdLGVGCskVPDINdvgLMEDRATLRISSQHVANWLVHGIVTADE-VWDALRRMAKVVDE 664
                      8.888889999999*********************99*****************************************6.************** PP

                      HCCHHHHHHHCCTTHHHCHHHHHHHHHTTTCCC-CHHHHHCCHH CS
  Malate_synthase 483 enarleelgkedeayreaakllkkeataeefadfltlkaykeli 526
                      +na       +d+ayr++         + +f++ ++++ + eli
       EGE24260.1 665 QNA-------SDPAYRPM---------SSDFDNNIAFQTAAELI 692
                      ***.......9*******.........88899999998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4861.71
//
Query:       EGE24261.1  [L=532]
Description: isocitrate lyase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-52  178.2   2.7      1e-25   90.2   0.1    3.1  3  ICL         Isocitrate lyase family
    4.6e-13   49.2   0.8    5.6e-12   45.6   1.1    2.1  2  PEP_mutase  Phosphoenolpyruvate phosphomutase
  ------ inclusion threshold ------
       0.11   12.4   0.7       0.21   11.6   0.7    1.3  1  RRP36       rRNA biogenesis protein RRP36
       0.14   12.1   0.2       0.33   10.9   0.2    1.6  1  DUF3944     Domain of unknown function (DUF3944)


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.1   2.3e-29     1e-25      80     240 ..      96     269 ..      18     278 .. 0.79
   2 !   43.7   0.0     3e-15   1.3e-11     352     426 ..     315     392 ..     275     405 .. 0.84
   3 !   43.2   0.1     4e-15   1.8e-11     430     522 ..     432     526 ..     420     530 .. 0.81

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 2.3e-29
                 -EEE-HHHHHHH--TT----SS-S-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHH.........HTTS----....----EEEE-TT-SSSHHH CS
         ICL  80 tiyvsGwqssstastsnepspdladypmdtvpnkvehlflaqlfhdrkqkeerlkvkkee.........reklanvd....ylrpiiadadtGhGGlta 165
                  iy+sGw  ++  s    p pd + +  ++vp  +e +++     d k+ ++  ++ ++          +e  a++d    ++ piiad d+G+G   a
  EGE24261.1  96 YIYLSGWMVAALRSE-FGPLPDQSMHEKTAVPKLIEEIYTFLRQADAKELNDLFRALQQAeqagdeakvKEIEAKIDnfetHVVPIIADIDAGFGNEEA 193
                 39*****99988765.57*********************998888988887755543322123332322334477874444578*************** PP

                 HHHHHHHHHHTT-SEEEE-SB-TT---------EEE--HHHHHHHHHHHHHHHHHTT--.-EEEEE--GGGEEEES CS
         ICL 166 vvkltklfierGaaGihiedqasgtkkcGhmaGkvlvpiqehinrlvairaqadilgsd.llvvartdseaatlit 240
                 +  ltk +ie Ga  i ie+q s +k+cGh aGkv vp ++ + ++ a+r ++  lg+d  ++vartdse a l +
  EGE24261.1 194 TYLLTKQMIEAGACAIQIENQVSDAKQCGHQAGKVTVPHEDFLAKINAVRYAFLELGVDeGVIVARTDSEGADLTQ 269
                 ****************************************************99999873699*********9976 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 3e-15
                 S--TT--EEE--SHHHH...HHHHHHHTTS-SEEE---SS--HHHHHHHHHHHHTT-TT-EEEEE--SSS-GGGTS-H CS
         ICL 352 prvreGyyrykGgtqcs...vvravafapyadliwmesklpdyaqakefaeGvkakvpeqklaynlspsfnwkkamsa 426
                 +r   G+y+++ gtq     +   ++    ad+iw+e+ +pd+a    f + +k++vp+ kl yn spsfnw+    +
  EGE24261.1 315 TRLPSGLYQFREGTQHErvvLDCVTSLQNGADMIWIETPTPDVAGIARFVNDIKKQVPDAKLVYNNSPSFNWTINFRQ 392
                 57778******9998642113345678889******************************************977655 PP

  == domain 3  score: 43.2 bits;  conditional E-value: 4e-15
                 HSHHHHHH.HTTEEEEEETTHHHHHHHHHHHHHHHHH.HHHTHHHHHHHTHHHHHHHT-GGGSHHHHHTHHHHHHHHHHHH--XXXXXXXXXXXX CS
         ICL 430 etyikrla.klGyvwqfitlaGlhtnalisdkfakdy.akrGmkaygeevqeeeidnGvdvvkhqkwsGaeyidellklvtGGvsstaamGkGvt 522
                 +t+    a + G    +itl   ht+al ++++ak y  ++Gm ay+  vq++ei +G+  vkhq  +G++  d+   + +G  +  a      t
  EGE24261.1 432 RTFQADAArEAGVFHHLITLPTYHTAALSTHELAKGYfGDEGMLAYVAGVQRKEIRDGIACVKHQAMAGSDIGDDHKEIFSGENALKAGDASKNT 526
                 55554444146778899******************863799*********************************999999987766665555555 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   1.1   1.2e-15   5.6e-12      64     146 ..     172     262 ..     149     277 .. 0.80
   2 ?    0.6   0.0      0.07   3.1e+02     166     196 ..     341     374 ..     324     386 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.2e-15
  PEP_mutase  64 iaevvslPlivDledGygespeevaetvrrliaaGvvgvniEDk.....kkn.d.aerqlldieefaekiaaaraaaeeag...fvinARtda 146
                  +e++ +P+i+D+++G+g+  e      +++i+aG++++ iE +     +     a++ +++ e+f++ki+a+r a  e g    vi+ARtd+
  EGE24261.1 172 NFETHVVPIIADIDAGFGN-EEATYLLTKQMIEAGACAIQIENQvsdakQ-CgHqAGKVTVPHEDFLAKINAVRYAFLELGvdeGVIVARTDS 262
                 345567************9.78999999****************987532.2443666677*******************99999*******9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.07
  PEP_mutase 166 aeAGAdgvfvpglqkdae.iaelvaavd..vpln 196
                 ++ GAd++ +   + d + ia++v+ ++  vp  
  EGE24261.1 341 LQNGADMIWIETPTPDVAgIARFVNDIKkqVPDA 374
                 578*********9999888*****9995456654 PP

>> RRP36  rRNA biogenesis protein RRP36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   4.6e-05      0.21      44      90 ..     126     174 ..     116     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
       RRP36  44 edlfeknYaFLdeyrekEleelkkelkkekdk..eeekeelkrelqrle 90 
                 ++l+e+ Y FL++  +kEl++l ++l++ +++  e++++e+++++++ e
  EGE24261.1 126 PKLIEEIYTFLRQADAKELNDLFRALQQAEQAgdEAKVKEIEAKIDNFE 174
                 6789999********************7777455899999999998776 PP

>> DUF3944  Domain of unknown function (DUF3944)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   7.4e-05      0.33       8      25 ..     134     151 ..     134     155 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.4e-05
     DUF3944   8 eFLkklssedLedLfdiL 25 
                 +FL++++  +L+dLf++L
  EGE24261.1 134 TFLRQADAKELNDLFRAL 151
                 6***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3783.97
//
Query:       EGE24262.1  [L=160]
Description: chorismate pyruvate lyase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-20   72.8   0.0      3e-20   72.5   0.0    1.0  1  Chor_lyase  Chorismate lyase
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.019   14.9   0.0    1.2  1  DUF98       p-hydroxybenzoic acid synthase


Domain annotation for each model (and alignments):
>> Chor_lyase  Chorismate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   3.3e-24     3e-20      13     159 ..       7     152 ..       2     159 .. 0.92

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 3.3e-24
  Chor_lyase  13 lesvapavsdWLleegsLtrrlkalae.elrvelLaeswi..tlrddeeqllaseealsgwvRevilkgddrPlvfartliprssletqgfdlaqlGkr 108
                 l+ ++p + d+++ +gsLt rl+a  +  l+ve++ ++++  t  +  + +l  ++   +wvR v l+gd   +v a+++ p ssl ++   l+ lG  
  EGE24262.1   7 LDHLPPKLADFVFTQGSLTARLEAHSKkPLKVEIIHQGYQplTFAQKSQLGLPLNRPQMAWVRSVKLYGDADAWVLAKSIFPLSSLTGSLARLKALGAT 105
                 67899*******************99979***********76777777777777888889*************************************** PP

  Chor_lyase 109 aLGellfsdsdvkRdklevtrveaeleaLyaRRsrlsigaknvlvaelfLt 159
                 ++G +lf     kR++l + r+    ++  +R +   i+ +++l+ elfL+
  EGE24262.1 106 PIGYVLFK----KRQQLPIKRHFYRYDGQIGRQTVYDINGRKILIDELFLA 152
                 *******6....799999999999999***********************4 PP

>> DUF98  p-hydroxybenzoic acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.1e-06     0.019       3      93 ..      20     116 ..      18     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-06
                 --S-HHHHHHHHHSS-EEEEEEEEEEEE--HHHHHHHTS-T..T-EEEEEEEEEEETTEEEEEEEEEEEGGGS-HHHHH....SSS-HHHHHHHTT- CS
       DUF98   3 gDGsvTrhlelltqekveveliemeaeeseeeeapkeveel..kkpllrRqVwlrangqklayAeSwwneeelekylke....kdqpiwksLtkerl 93 
                 + Gs T+ le+ ++++ +ve+i+++ ++ + ++  +    l  ++    R V l ++  + + A+S ++ ++l  +l        +pi+  L k+r 
  EGE24262.1  20 TQGSLTARLEAHSKKPLKVEIIHQGYQPLTFAQKSQLGLPLnrPQMAWVRSVKLYGDADAWVLAKSIFPLSSLTGSLARlkalGATPIGYVLFKKRQ 116
                 78**********************99998887777766666224445579999999*****************999988777778899999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1263.44
//
Query:       EGE24263.1  [L=420]
Description: serine hydroxymethyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-179  595.5   0.4   4.1e-179  595.3   0.4    1.0  1  SHMT             Serine hydroxymethyltransferase
      2e-07   30.5   0.0    3.4e-07   29.8   0.0    1.3  1  Aminotran_1_2    Aminotransferase class I and II
    1.1e-05   24.9   0.2    1.6e-05   24.4   0.2    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00079   18.8   0.1     0.0011   18.4   0.1    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.015   14.0   0.1      0.039   12.7   0.1    1.6  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  595.3   0.4  1.1e-182  4.1e-179       1     399 []       7     385 ..       7     385 .. 0.99

  Alignments for each domain:
  == domain 1  score: 595.3 bits;  conditional E-value: 1.1e-182
                 HHHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHH CS
        SHMT   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqan 99 
                 l+++dpe+a  i+ e++rq+++ieliasen++s+av++a+Gs+ltnkyaeGyP kryyGGce+vd +e++a+drakelf++d    +vnvqp+sGs an
  EGE24263.1   7 LHQYDPELATQIDAETKRQEDHIELIASENYCSPAVMQAQGSTLTNKYAEGYPKKRYYGGCEHVDAIEQIAIDRAKELFGAD----YVNVQPHSGSSAN 101
                 5789******************************************************************************....************* PP

                 HHHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT- CS
        SHMT 100 lavytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevga 198
                  av+ allep+d++lg++la+GGhlthGa+v++     s+  +++v+y++d+etglidy+e+ + a+e+kPk+i+aG+says++id++++r+iadevga
  EGE24263.1 102 SAVFLALLEPNDTVLGMSLAHGGHLTHGASVNF-----SGRNYHAVQYGLDTETGLIDYEEVARLAREHKPKMIIAGFSAYSQIIDWQKFRDIADEVGA 195
                 *********************************.....************************************************************* PP

                 EEEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHH CS
        SHMT 199 yllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepe 297
                 yl++dmah+aGlva+g++psP++ adv+tttthktlrGpr+glil++            ++ee+ekk+ savfPg qGGPl+h+iaakav++kea++++
  EGE24263.1 196 YLMADMAHVAGLVATGIYPSPVQIADVTTTTTHKTLRGPRSGLILAK------------ANEEIEKKLASAVFPGSQGGPLMHAIAAKAVCFKEAMSDD 282
                 **********************************************9............679************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTS.STTTT-SEEEEESHHHHHTT--HHHHHHH CS
        SHMT 298 fkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgd.ksalvtsGlrlGtpaltsrgfkeedlekv 395
                 f+ yqkqv+ naka+ae+++++gy++vsgGt nhl+l++l ++g++Gk+a+k l+ ++it+nkn+vP+d ks++vtsG+r+Gtpa+t+rgf+e++++++
  EGE24263.1 283 FQSYQKQVIINAKAMAEVIQSRGYEIVSGGTKNHLMLISLIKQGITGKEADKWLGDAHITVNKNSVPNDpKSPFVTSGIRIGTPAVTTRGFGEAEVREL 381
                 *************************************************************************************************** PP

                 HHHH CS
        SHMT 396 akfi 399
                 a +i
  EGE24263.1 382 AGWI 385
                 *997 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   9.5e-11   3.4e-07      38     352 ..      62     369 ..      31     376 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 9.5e-11
                    TST-BTTHHHHHHHHHH.....HHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEET... CS
  Aminotran_1_2  38 neygpidglpeleeala.....kflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyse... 125
                      yg ++ + ++ e++a     +++g       +   +v+  sG++a+ +++ +ll+  p d +l  ++ ++ + +      +  + y+  +    
     EGE24263.1  62 RYYGGCE-HVDAIEQIAidrakELFG------ADYV-NVQPHSGSSANSAVFLALLE--PNDTVLGMSLAHGGHLTHGASVNFSGRNYHAVQYgld 147
                    4566666.777777777666667777......7777.***************99998..************9998766666666666664333445 PP

                    .TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT.EEEEEES CS
  Aminotran_1_2 126 .edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn.llivgsl 219
                     e+  +d e++ ++ +e+     k+k+i+    ++   ++++ ++ +++   a++ +++l+ D+a+ ++   +        ++ + p  ++ v++ 
     EGE24263.1 148 tETGLIDYEEVARLAREH-----KPKMIIAG--FSAYSQIIDWQKFRDI---ADEVGAYLMADMAHVAGLVAT--------GIYPSPVqIADVTTT 225
                    588899999999977774.....66887765..6667777777777777...***************999982........333333344456666 PP

                    SSTTSSGGG-EEEEEE..EHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEE..CCSCSSEEEE CS
  Aminotran_1_2 220 sKafGlaGeRvGyilg..naavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvl..asqsgmfllt 310
                     +   l G R G il+  n+++ + l++++ p+     l+ a++a+a+  ++ + ++++  +++++ ++k + + +++ g +++  + ++++ l++
     EGE24263.1 226 TTHKTLRGPRSGLILAkaNEEIEKKLASAVFPGSQgGPLMHAIAAKAVCFKEAMSDDFQSYQKQVIINAKAMAEVIQSRGYEIVsgGTKNHLMLIS 321
                    6666789999******5555**********99999777888999999999999999***********************55544004446666666 PP

                    EETHH.CHHHHHHHHHHTCTEEEEEGGGGTS......TTEEEEECTTS- CS
  Aminotran_1_2 311 dlsae.takelskkLleevgvyvtpgtsftv......pgrlRitvAglt 352
                    ++++  t ke+ k L +  ++ v +++ +        ++ +Ri  +++t
     EGE24263.1 322 LIKQGiTGKEADKWLGDA-HITVNKNSVPNDpkspfvTSGIRIGTPAVT 369
                    655557666666666666.777777666665555666556777775555 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.2   4.4e-09   1.6e-05      39     216 ..      79     284 ..      60     351 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 4.4e-09
                      HHHHHHTT-SEE.EEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT...TBE-HHHHHHHS--S-TTS-EE CS
  Beta_elim_lyase  39 davaelfgkeaa.lfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkea...Gkmdlekleaaikevgaheeki 128
                      d+++elfg++++ +  ++G  Ans  + +ll++++ v+  + ah+   + ga + ++g + + ++   +   G +d e+++++ +e      k+
       EGE24263.1  79 DRAKELFGADYVnVQPHSGSSANSAVFLALLEPNDTVLGMSLAHGGHLTHGASVNFSGRNYHAVQYGLDtetGLIDYEEVARLARE-----HKP 167
                      78999*****8725788******************************************9999985544455************99.....477 PP

                      EEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH......... CS
  Beta_elim_lyase 129 klisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrddel....... 215
                      k+i+      +   q++  ++    ++ia++ g  l+ D A +a  + + g    + ++ +D+ t    K l  +  g+++ + +e+       
       EGE24263.1 168 KMIIAGFSAYS---QIIDWQK---FRDIADEVGAYLMADMAHVAGLV-ATGIY-PSPVQIADVTTTTTHKTLRGPRSGLILAKANEEiekklas 253
                      89998888886...6666554...55678889999999999887655.44443.3456777888877777777777777777666555666666 PP

                      ............................... CS
  Beta_elim_lyase 216 ..............................e 216
                                                    +
       EGE24263.1 254 avfpgsqggplmhaiaakavcfkeamsddfQ 284
                      6666666666655555555555555554433 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1     3e-07    0.0011      81     155 ..     135     211 ..      87     280 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3e-07
                      HHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE.EEEEE.B-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETT CS
  DegT_DnrJ_EryC1  81 lelgakpvfvDvdpdtynidpaaieaaitert.kaIlp.VhlyGqvadmdalkaiaakhglkvieDaAhAlGatykg 155
                      +  ++ +v    d +t  id ++++++  e   k I++   +y+q+ d ++ ++ia++ g +++ D Ah  G    g
       EGE24263.1 135 SGRNYHAVQYGLDTETGLIDYEEVARLAREHKpKMIIAgFSAYSQIIDWQKFRDIADEVGAYLMADMAHVAGLVATG 211
                      456788899999**************9988876776653799***************************99988777 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.1e-05     0.039      71     314 ..      77     301 ..      67     353 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHCT-SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--EB-TTS-BE---GGGGSHHHHH.HHHHHSTTTGS CS
    OKR_DC_1  71 aqkyaarvfgadksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvylepernalgiiggidlkefeeetlk.ekikevpdaka 168
                 a + a ++fgad   +  +  ss+n +v  a+l+p+d+vl       S++h+  l+    v ++  rn   +  g+d+   e++ +  e+++  + +++
  EGE24263.1  77 AIDRAKELFGADYVNVQPHSGSSANSAVFLALLEPNDTVLG-----MSLAHGGHLTHGASVNFS-GRNYHAVQYGLDT---ETGLIDyEEVARLAREHK 166
                 66778899****88888889999****************95.....588886666666666664.4899999999999...556554378999999999 PP

                 ESEEEEESS-TTSEEE-HHHHHHHHTTSESEEEEE-TT-TTGGGSGGGTTSSSSSSS-BTTBEEEEEEEHCCCCS--TT-EEEEEES-BT--HHHHHHH CS
    OKR_DC_1 169 prlavitnsTYdGvlynakeivdkleklsdrilfDeAwvgyeqfiplyadaskllaenendpgilvtqSvHKllaalsqaSlihvkeelivneerlnea 267
                 p++++   s Y   + + ++  d +++++ +++ D A+v+    + +y + +++ a+       + t+ +HK+l +   + ++ + +e  +++ +l++a
  EGE24263.1 167 PKMIIAGFSAYS-QIIDWQKFRDIADEVGAYLMADMAHVAGLVATGIYPSPVQI-AD-------VTTTTTHKTLRGPRSGLILAKANE-EIEK-KLASA 254
                 888888888886.77899**********************99999999999987.56.......689999999999766655555544.4554.45555 PP

                 HHHTS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH CS
    OKR_DC_1 268 fmmhattSpsYpllAsldvaakmlegesgrrlleevveraielrkei 314
                     +   p+   +A+  v  k   +   ++  ++v+ +a  + + i
  EGE24263.1 255 VFPGSQGGPLMHAIAAKAVCFKEAMSDDFQSYQKQVIINAKAMAEVI 301
                 55555556666666666666666656666666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 3387.89
//
Query:       EGE24264.1  [L=255]
Description: leucyl/phenylalanyl-tRNA--protein transferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-65  219.8   0.0    1.8e-65  219.6   0.0    1.1  1  Leu_Phe_trans  Leucyl/phenylalanyl-tRNA protein transferase


Domain annotation for each model (and alignments):
>> Leu_Phe_trans  Leucyl/phenylalanyl-tRNA protein transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.6   0.0     1e-69   1.8e-65       2     168 ..      46     218 ..      45     219 .. 0.96

  Alignments for each domain:
  == domain 1  score: 219.6 bits;  conditional E-value: 1e-69
  Leu_Phe_trans   2 erlleayaqgifpwaeeeepilwwspdpRavleldelhisrslrktlrkkefevtidkaFeeVieacaekkrre.gtWiteeiieaYteLheagla 96 
                    ++ll+ay++g fpw++e+epi+wwsp+ R+v++++++  s+sl +t++k+ +++t++ +Fe+Vi+ c++++r++ +tWi+++++ aY++L++ g a
     EGE24264.1  46 STLLHAYRSGAFPWFDEDEPICWWSPEIRCVITPNDFYPSKSLIRTAKKQPWTITTNADFEAVINVCRAPRRDTvQTWIHDNMVLAYRQLFKIGAA 141
                    689*****************************************************************9998778********************* PP

  Leu_Phe_trans  97 hSvEvw.....egeLvGGlyGvalgkvffgeSmFsrksdaSkvalvalvellkekgfeliDcqvetphlaslGakei 168
                     S+Evw     + eL+GGlyGv++g++f+geSmF+r++daSk+a++al++  ++ g++liDcq+e+phl++lGa+ +
     EGE24264.1 142 ASIEVWagmpyDSELIGGLYGVSFGSIFCGESMFHRRNDASKIAFWALMHWANQYGIQLIDCQLENPHLRRLGANLM 218
                    ******86654469***********************************************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1852.18
//
Query:       EGE24490.1  [L=117]
Description: hypothetical protein EA1_07242 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.7e-16   58.3   0.6    1.2e-15   58.0   0.6    1.0  1  DDE_Tnp_IS1  IS1 transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.6   6.7e-20   1.2e-15      26     121 ..       7     102 ..       4     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 6.7e-20
  DDE_Tnp_IS1  26 aydrkrktvlayvfgertdetlrellallspfdvviltsddwglyerelkkdkhliskiytqriernnltlrtrlkrlarkslsfsksvelhekvi 121
                  a d+  k +l +v g+  ++t ++l   l    + ++ sd w +y + + k kh++sk  t  ie  n  +r+ ++r++rks ++sks ++ e  +
   EGE24490.1   7 AIDTNSKQILGFVCGKTDTNTFKRLYQQLNTHSIQLFFSDYWKSYRQVILKPKHITSKAQTFTIEGYNSLIRHFIARFTRKSKCYSKSEKMIENTL 102
                  78999***********************************************************************************88877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 890.31
//
Query:       EGE24491.1  [L=287]
Description: KWG Leptospira family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-53  176.2  11.5    2.3e-10   40.6   1.0    6.3  6  WG_beta_rep  WG containing repeat
  ------ inclusion threshold ------
      0.012   15.7   1.9        7.6    6.7   0.1    4.2  5  BOF          Bacterial OB fold (BOF) protein


Domain annotation for each model (and alignments):
>> WG_beta_rep  WG containing repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.3e-12   1.2e-08       1      35 []      88     122 ..      88     122 .. 0.97
   2 !   40.3   0.0   3.1e-14   2.8e-10       1      35 []     122     156 ..     122     156 .. 1.00
   3 !   40.6   1.0   2.5e-14   2.3e-10       1      35 []     156     191 ..     156     191 .. 0.98
   4 !   39.4   0.0   5.8e-14   5.2e-10       1      31 [.     191     221 ..     191     225 .. 0.95
   5 !   28.2   0.8   1.9e-10   1.7e-06       1      25 [.     236     260 ..     236     268 .. 0.89
   6 ?    0.5   0.0     0.087   7.8e+02       3       9 ..     272     278 ..     271     280 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.3e-12
  WG_beta_rep   1 yGyiDknGkivippkYddagsFseGlaaVkknGKW 35 
                  yGy+++ G++vip+ Y  a++Fs+Gla+ ++n+ +
   EGE24491.1  88 YGYVNTVGELVIPAVYQAAYPFSDGLALYRENDHY 122
                  9*******************************977 PP

  == domain 2  score: 40.3 bits;  conditional E-value: 3.1e-14
  WG_beta_rep   1 yGyiDknGkivippkYddagsFseGlaaVkknGKW 35 
                  yGy D++G+ vi p+Y +a+ FseG a +++nGK+
   EGE24491.1 122 YGYLDTSGQSVIAPQYTKAWEFSEGRAKIEQNGKY 156
                  9*********************************9 PP

  == domain 3  score: 40.6 bits;  conditional E-value: 2.5e-14
  WG_beta_rep   1 yGyiDknGkivippkYddags.FseGlaaVkknGKW 35 
                  yG+iD++Gkivi p Y+ +g+ F+eGl ++k+++K+
   EGE24491.1 156 YGFIDTTGKIVIHPNYEVIGDwFEEGLVLFKQKDKY 191
                  9********************88************9 PP

  == domain 4  score: 39.4 bits;  conditional E-value: 5.8e-14
  WG_beta_rep   1 yGyiDknGkivippkYddagsFseGlaaVkk 31 
                  yG+ Dk+G+i i p++d+a+ FseGlaaV  
   EGE24491.1 191 YGFLDKSGNIAIRPQFDSAKGFSEGLAAVTM 221
                  9****************************86 PP

  == domain 5  score: 28.2 bits;  conditional E-value: 1.9e-10
  WG_beta_rep   1 yGyiDknGkivippkYddagsFseG 25 
                  yG+iD++Gk+vi++kYd a++F  G
   EGE24491.1 236 YGFIDRTGKVVIDIKYDLAYDFLSG 260
                  9********************9555 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.087
  WG_beta_rep   3 yiDknGk 9  
                  yiDk+G+
   EGE24491.1 272 YIDKSGN 278
                  9*****9 PP

>> BOF  Bacterial OB fold (BOF) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.35   3.1e+03      47      63 ..      83      99 ..      79     108 .. 0.82
   2 ?   -1.1   0.0      0.21   1.9e+03      48      61 ..     118     131 ..     113     143 .. 0.82
   3 ?    0.7   0.0      0.06   5.4e+02      49      64 ..     153     168 ..     147     174 .. 0.81
   4 ?    6.7   0.1   0.00085       7.6      44      64 ..     183     203 ..     178     228 .. 0.86
   5 ?    3.6   0.2    0.0078        70      50      66 ..     234     250 ..     207     258 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.35
                EETTEEEEEETTEEEEE CS
         BOF 47 iddDeyvFrDasGeikv 63
                i+dD+y + ++ Ge+ +
  EGE24491.1 83 IKDDHYGYVNTVGELVI 99
                8999**99999999866 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.21
                 ETTEEEEEETTEEE CS
         BOF  48 ddDeyvFrDasGei 61 
                 ++D+y + D+sG+ 
  EGE24491.1 118 ENDHYGYLDTSGQS 131
                 789*********75 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.06
                 TTEEEEEETTEEEEEE CS
         BOF  49 dDeyvFrDasGeikve 64 
                 + +y F D++G+i ++
  EGE24491.1 153 NGKYGFIDTTGKIVIH 168
                 5689*******99875 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.00085
                 EEEEETTEEEEEETTEEEEEE CS
         BOF  44 vkriddDeyvFrDasGeikve 64 
                 v  +++D+y F D+sG+i + 
  EGE24491.1 183 VLFKQKDKYGFLDKSGNIAIR 203
                 555789***********9885 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.0078
                 TEEEEEETTEEEEEE-- CS
         BOF  50 DeyvFrDasGeikveid 66 
                  +y F D +G++ ++i+
  EGE24491.1 234 HKYGFIDRTGKVVIDIK 250
                 689************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2218.65
//
Query:       EGE24492.1  [L=916]
Description: [protein-PII] uridylyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-29  103.5   0.2    4.1e-29  101.6   0.0    2.1  2  GlnD_UR_UTase  GlnD PII-uridylyltransferase
    1.5e-09   38.1   0.4    4.5e-09   36.6   0.4    1.9  1  HD             HD domain
     0.0013   19.0   0.1     0.0042   17.3   0.1    1.8  1  NTP_transf_2   Nucleotidyltransferase domain
     0.0015   18.2   0.8       0.12   12.2   0.0    3.8  5  ACT            ACT domain
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.027   14.3   0.0    1.8  1  DUF294         Putative nucleotidyltransferase DUF294
      0.057   14.0   0.2        2.2    8.9   0.0    3.0  3  ACT_4          ACT domain
       0.25   11.4   0.6        0.9    9.6   0.1    2.1  2  zf-CCHH        PBZ domain


Domain annotation for each model (and alignments):
>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   1.6e-32   4.1e-29       2     145 ..     191     336 ..     190     337 .. 0.92
   2 ?   -1.7   0.0       1.1   2.7e+03     122     141 ..     621     641 ..     565     643 .. 0.72

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 1.6e-32
  GlnD_UR_UTase   2 fmkakieeekarrgrsd.t..llepniKlGpGGlRdiefivqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrflrrlehrLq 94 
                    f+ ak++e kar   ++ t  +lepniK+ +GGlRdi++i ++ ++++           + + ++ l+++++++e+e+  l++ +r+l+ ++h+L+
     EGE24492.1 191 FYDAKMAESKARYLAHNaTeyNLEPNIKNAAGGLRDIHMIGWLGRFYF-----------GSSDIKLLATTDFINENECTILQAGQRYLWCIRHHLH 275
                    7899*************989****************************...........99*********************************** PP

  GlnD_UR_UTase  95 lladrqthrLpfdeeeqrrlaealgy........redkaa.......fmkelfqhaerVrrlfekl 145
                     la+r ++rL+fd  +q+++ae++gy        ++   +       +m+ ++qha ++++++e l
     EGE24492.1 276 TLAGRGEDRLLFD--YQKAIAERFGYytrtldttHQ---DitqaletMMRVYYQHAMKIAAFSEVL 336
                    *************..**********98877644422...25557999*************999876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
  GlnD_UR_UTase 122 edkaa.fmkelfqhaerVrrl 141
                    ++++a ++k+l++ +++V++l
     EGE24492.1 621 NTWRAtLLKQLYTSVHQVHSL 641
                    456667888999998888865 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.4   1.8e-12   4.5e-09       4      99 ..     483     586 ..     480     616 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.8e-12
                 HHHHHHHHHHHHHHHHHH..............HHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
          HD   4 HsleVaklarrlaedlge..............eedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld...ledvakli 85 
                 H+l   +++ r+++d+                 + +++l++aa++HDi+kg+ gd              H+k ga  + e+++ +g +    ++v +l+
  EGE24492.1 483 HTLLLVRILHRFGDDRLDnqdkyglvaeiyqrIARKDILVIAAIFHDIAKGRGGD--------------HSKLGAADAYEFCLAHGMSeadSKLVRWLV 567
                 66666666666666665566666666666666678999****************9..............****************999*********** PP

                 HTTCCHHHHHHHH.....H CS
          HD  86 rehheswegkkrp.....r 99 
                 +eh+ ++ ++++      +
  EGE24492.1 568 LEHLTMSLTAQKQdisdpE 586
                 ********98776444430 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.6e-06    0.0042      13      42 ..      87     117 ..      73     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.6e-06
                   T.TSEEEEEHHHHCTTSCTTSSEEEEEEEST CS
  NTP_transf_2  13 p.vakvvlfGSyarGtalkgSDiDllvvlpe 42 
                   p +  ++++G y r ++l+ SD+D+l++++e
    EGE24492.1  87 PkDFALFAVGGYGRSELLPASDVDILLIGDE 117
                   2588899********************9987 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3   5.8e+03      42      61 ..     298     317 ..     294     320 .. 0.84
   2 ?   -2.1   0.0       1.4   3.6e+03      31      60 ..     361     391 ..     360     393 .. 0.84
   3 ?   -0.1   0.0      0.32   8.2e+02       5      26 ..     499     520 ..     498     526 .. 0.83
   4 ?    0.4   0.1      0.22   5.6e+02       3      38 ..     727     762 ..     725     778 .. 0.76
   5 !   12.2   0.0   4.6e-05      0.12       8      47 ..     853     889 ..     850     910 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.3
                 EEEEEEEEEEHHHHHHHHHH CS
         ACT  42 givfvvivvdeedleevlea 61 
                 g+++ ++ + ++d+ ++le+
  EGE24492.1 298 GYYTRTLDTTHQDITQALET 317
                 67889999999***999996 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
                 EEEEEESTT.ECEEEEEEEEEEHHHHHHHHH CS
         ACT  31 ieqrssedk.vagivfvvivvdeedleevle 60 
                 i+++s++ +  a+i++    ++  d++++l+
  EGE24492.1 361 IQSGSDHQSrPAKIAIRRPDAFLVDPANLLK 391
                 7788888889999999999999999999887 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.32
                 EEEESSTTHHHHHHHHHHHTTS CS
         ACT   5 vgvpDrPGlLarvfgaladrgi 26 
                 ++ +D+ Gl a++ + +a+ +i
  EGE24492.1 499 LDNQDKYGLVAEIYQRIARKDI 520
                 5789*********998888877 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.22
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEEST CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssed 38 
                 l++ +pD+  l+a   ++l ++g+++  +++ s + 
  EGE24492.1 727 LLICAPDQDNLFATTVCILDQLGLSVLDATILSADI 762
                 56667777778899999**********999877766 PP

  == domain 5  score: 12.2 bits;  conditional E-value: 4.6e-05
                 ESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEE CS
         ACT   8 pDrPGlLarvfgaladrgiNidsieqrssedkvagivfvv 47 
                 +DrP lLa+v++++++++i ++ + +++ +++     +++
  EGE24492.1 853 KDRPSLLAKVGAVFSELNIQVHGARITTLGER---AEDIF 889
                 79999**********************99985...33333 PP

>> DUF294  Putative nucleotidyltransferase DUF294
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.1e-05     0.027      26      78 ..      71     119 ..      39     140 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
      DUF294  26 elndallrrlielaeeelgkppvpfallvmGSeGReEqtlktDqDnalvled.e 78 
                    d +lr+l+++ +      p +fal+++G  GR E + ++D D  l+ ++  
  EGE24492.1  71 LAIDIILRQLFDFYQ-----FPKDFALFAVGGYGRSELLPASDVDILLIGDEiG 119
                 333333333333333.....589**********************999988732 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.5   6.4e+03      55      72 ..     433     450 ..     429     452 .. 0.83
   2 ?    1.2   0.0      0.22   5.6e+02      14      35 ..     502     523 ..     498     533 .. 0.83
   3 ?    8.9   0.0   0.00088       2.2       9      41 ..     848     880 ..     845     890 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.5
       ACT_4  55 eVkdvehLsrviakLrai 72 
                  + ++++L+ + ++Lr +
  EGE24492.1 433 FLANLQELNYLFHRLRLM 450
                 57899**********965 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.22
       ACT_4  14 edrkglLaditqviseekaniv 35 
                 +d+ gl+a+i q i+ +++ + 
  EGE24492.1 502 QDKYGLVAEIYQRIARKDILVI 523
                 7999************998765 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00088
       ACT_4   9 leveaedrkglLaditqviseekanivsvnakt 41 
                 ++++++dr+ lLa++ +v+se +++++  +++t
  EGE24492.1 848 MHLITKDRPSLLAKVGAVFSELNIQVHGARITT 880
                 68999*********************9998877 PP

>> zf-CCHH  PBZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.67   1.7e+03      13      23 ..       7      17 ..       6      25 .. 0.75
   2 ?    9.6   0.1   0.00035       0.9      11      21 ..     423     433 ..     423     434 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.67
     zf-CCHH 13 kNpqHfqefsH 23
                +N  H+++ +H
  EGE24492.1  7 QNFKHLAKTCH 17
                78888888877 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00035
     zf-CCHH  11 YRkNpqHfqef 21 
                 YRkNp H+q f
  EGE24492.1 423 YRKNPVHRQLF 433
                 ********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 6655.52
//
Query:       EGE24493.1  [L=262]
Description: methionine aminopeptidase, type I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-49  166.6   0.7    6.9e-49  166.4   0.7    1.0  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.7   3.8e-53   6.9e-49       1     209 []      14     243 ..      14     243 .. 0.90

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 3.8e-53
                    HHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.....TCEESSSSEEEEGGGGGSTTTBCS.SSB--TTEEEEEEEEEEETTEEE CS
  Peptidase_M24   1 elirkaariasaaleavleaikpgvterelaaeieattlkrhg.....arglafppivasgenaavlhytpn.drvlkegdlvlidagaeydgyas 90 
                    ++++ a+++a+ +l  + e++k gv++  l+++++++ + +hg      ++ +fp+++++++n+ v+h++p+ +r lkegd+++id+++  dgy++
     EGE24493.1  14 DKMKTAGKLAADVLVMLDEHVKTGVSTGVLDDIAHQY-ILDHGaipapLNYNGFPKSICTSINHVVCHGIPDhERLLKEGDIINIDITVIKDGYYG 108
                    58***************999***************99.889999***************************967779******************* PP

                    EEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB--TTBEE CS
  Peptidase_M24  91 DitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsr..esndgrkleeGmvf 184
                    D++ +++vG+ +  +++l++++++a++a++k vk G++l++i+aa+++v+e + + + +++++GHg+G+ +h e p+v +  ++++g +l+ Gm f
     EGE24493.1 109 DTSKMWIVGQGSVMAQRLCQVAQKALYAGMKVVKNGAHLGDIGAAIQAVVEPERF-SIVREFCGHGIGQTFHAE-PQVLHygKAGTGIELKTGMAF 202
                    *********88889999**********************************9899.999**************9.**987666669********** PP

                    EEEE....EEEEET....TT.......E.EEEEBEEEEEES CS
  Peptidase_M24 185 tiEp....giyfap....ge.......g.gvriedtvlvte 209
                    tiEp    g+++ +    g+       + ++++e+t++vt+
     EGE24493.1 203 TIEPminqGVWQTKimkdGWtaitkdrKlSAQWEHTLIVTD 243
                    ****5555444222444455777777766**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2077.86
//
Query:       EGE24494.1  [L=111]
Description: hypothetical protein EA1_07262 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-27   94.3   0.0    4.9e-27   94.2   0.0    1.0  1  DUF442    Putative phosphatase (DUF442)


Domain annotation for each model (and alignments):
>> DUF442  Putative phosphatase (DUF442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   2.7e-31   4.9e-27       6     102 ..       2      98 ..       1     105 [. 0.96

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 2.7e-31
      DUF442   6 tedlsvspqidlddiaelaeaGfksvinnRPDgeepgqpsnaavqeaaeaaglaylfvPvisgeiteddveafqralaeaegpvlayCrsGtRalvl 102
                 +e +++s+qi +dd+++la++G+k+++nnRPDgeep+qps++ + + a + g++y+++P+ +g +  ++v++f+   ++ + p  ++CrsG R++ +
  EGE24494.1   2 SELITISGQITVDDVKSLANQGYKTLVNNRPDGEEPNQPSSDDIAKVAGEYGIEYRHIPFAGGMLEMHHVQEFADFYNQSQRPLHIFCRSGNRSSII 98 
                 56789****************************************************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 915.05
//
Query:       EGE24495.1  [L=716]
Description: 2,4-dienoyl-CoA reductase FadH [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-85  288.0   0.0    1.5e-85  287.4   0.0    1.2  1  Oxidored_FMN     NADH:flavin oxidoreductase / NADH oxidase fa
    1.4e-23   83.6   1.3    2.5e-23   82.8   1.3    1.4  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    1.5e-10   40.4   2.4    2.2e-06   26.6   0.6    2.8  3  HI0933_like      HI0933-like protein
    1.6e-10   41.1   0.1    5.4e-10   39.4   0.1    1.9  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    7.3e-09   35.3   3.6    0.00019   20.8   0.1    3.1  3  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    2.6e-08   34.3   8.3    7.9e-05   23.1   2.4    4.0  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    5.5e-08   32.3   2.1    2.3e-07   30.3   1.6    2.2  3  FAD_binding_2    FAD binding domain
    1.6e-07   31.1   1.8    2.9e-07   30.2   1.8    1.4  1  FAD_oxidored     FAD dependent oxidoreductase
    3.8e-06   26.4   0.7    3.8e-06   26.4   0.7    2.1  2  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    3.2e-05   23.2   0.1     0.0015   17.8   0.0    2.3  2  K_oxygenase      L-lysine 6-monooxygenase (NADPH-requiring)
    5.5e-05   22.4   3.4    8.1e-05   21.9   2.4    1.7  2  GIDA             Glucose inhibited division protein A
      9e-05   22.2   3.4      9e-05   22.2   3.4    3.3  4  DAO              FAD dependent oxidoreductase
    0.00014   21.3   0.2       0.18   11.1   0.0    2.8  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    0.00027   20.9   0.7      0.018   15.0   0.1    2.6  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    0.00032   20.0   0.2    0.00032   20.0   0.2    2.3  3  Thi4             Thi4 family
     0.0022   16.9   0.0     0.0031   16.4   0.0    1.2  1  MCRA             MCRA family
     0.0082   15.4   0.5      0.059   12.6   0.3    2.1  2  FAD_binding_3    FAD binding domain
  ------ inclusion threshold ------
      0.011   15.1   1.2      0.024   13.9   0.1    2.0  3  Amino_oxidase    Flavin containing amine oxidoreductase
      0.014   15.4   2.7        1.9    8.4   0.2    3.4  3  NAD_binding_9    FAD-NAD(P)-binding
      0.018   13.5   0.0      0.055   11.9   0.0    1.7  2  FMO-like         Flavin-binding monooxygenase-like
      0.078   12.3   1.3        1.3    8.3   0.1    2.4  2  ThiF             ThiF family
      0.097   12.6   2.8          4    7.4   0.1    3.6  4  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
      0.098   12.1   0.1       0.52    9.7   0.0    2.3  2  AP_endonuc_2     Xylose isomerase-like TIM barrel
        0.1   12.2   0.6       0.28   10.7   0.1    2.0  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
       0.12   12.6   0.7       0.54   10.4   0.2    2.4  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
       0.14   12.6   5.6       0.42   11.1   0.2    3.6  3  NAD_binding_7    Putative NAD(P)-binding
       0.19   11.1   2.0       0.64    9.4   0.7    2.4  3  G3P_antiterm     Glycerol-3-phosphate responsive antiterminat
       0.34   11.2   3.5         58    4.0   0.1    3.8  3  TrkA_N           TrkA-N domain
       0.35   11.0   2.3       0.91    9.7   2.3    1.6  1  Myco_arth_vir_N  Mycoplasma virulence signal region (Myco_art


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.4   0.0   2.5e-88   1.5e-85       2     338 ..      35     356 ..      34     359 .. 0.93

  Alignments for each domain:
  == domain 1  score: 287.4 bits;  conditional E-value: 2.5e-88
                   CCS-EEETTEEESSSEEE---.-S-TT..TTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-E CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapm.trlra..ldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengsk 95 
                   LF+P+++g++tLknR+vm++m t l+   +++g      +a y++ ra+++v+liit+++++n ++  ++    ++  ++i +++ +t avh++g+k
    EGE24495.1  35 LFEPLDLGFTTLKNRVVMGSMhTGLEDrfYHYG-----KLATYFEARAKGGVGLIITGGIAPNRTGWLIPAGGTLNRLGDIVHHARITRAVHKHGAK 126
                   9********************888865225666.....6778******************************************************* PP

                   EEEEEE--GGGS..SCSTCEC..SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----S CS
  Oxidored_FMN  96 vvvqlwhlGreakseyladqevdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtD 192
                   + +q++h Gr+    y++     +ps p++ + +      +  ++++++++i+ +i+++++ Ak+a++Ag+DgVei+g++GYL+nqFls ++nkrtD
    EGE24495.1 127 ILLQILHSGRYG---YHPFVV--APS-PIKSPIS------PFKPRQMSQNNIQSTIDDYAHTAKLAKKAGYDGVEIMGSEGYLINQFLSARTNKRTD 211
                   ***********9...888888..555.3344433......43478**************************************************** PP

                   TTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--HHHH...HHHHHHHCHCCEEEEEEETT-SS.SSSTTS-TTTTHHHCCTTHHH CS
  Oxidored_FMN 193 eygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldfaet...aqkivllkelekrlkdgkklalv.haaeprkrgagsvrteqeknt 284
                    ygGslenR+rF++evv+aV++a+g ++ +  RlS+ ++ve+g ++ ++   a++++l++  + ++ +g+++a++ ++++ ++r a+   t      
    EGE24495.1 212 SYGGSLENRMRFAIEVVRAVRKAAGMDFiITFRLSMIELVEDGATMQDVitlAKALELAGVSIINTGIGWHEARIpTIVTSVPRAAFTRYTA----- 303
                   ****************************9999*****************99999999999999************99999999999988777..... PP

                   HHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCC CS
  Oxidored_FMN 285 efvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkg 338
                     vk+  + p+i+++ri+ +++a+ei++ g+adLv m+R+flad d+v+k++++
    EGE24495.1 304 -AVKHAINIPVIAANRINMPQTAEEILSSGQADLVQMARPFLADSDWVNKAASN 356
                   .9************************************************9987 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   1.3     4e-26   2.5e-23       1     244 [.     404     677 ..     404     685 .. 0.82

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 4e-26
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekkkegde 95 
                  k+++++G+G+AGl+aa t+a  g++vt++ ++ t+ +g+  ++k++ g +e+ e+++   e++k ln  i++ l+   +k+d    k  l+       
   EGE24495.1 404 KKIIIVGAGVAGLSAAVTAASRGHQVTIY-EQHTHIGGQFNMAKVIPGKEEFFETIRyfrEQIKHLN--ITVHLN---TKVD----KAILN------- 484
                  589**************************.999*********************9999987766665..555566...4453....23342....... PP

                  EEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-.......................... CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
  Pyr_redox_2  96 ekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgk.......................... 166
                   +  +d++++AtG  pr l  ++G+  n  ++  ++ s+    +k   +r++v G+G iG ++A +l+   +                          
   EGE24495.1 485 -QSRADHVIIATGVVPRMLpSLEGA--NLPQV--ISYSDLLTGKKIAGERVAVLGAGGIGFDVAEFLTHGSSvsdavndatykpkamdvdtffthwgv 577
                  .2469*********99999899999..33223..2223333334444489****************95443355666777778899999999999999 PP

                  ......................EEEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES- CS
                  ......................xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 167 ......................evtlveardrll.raldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpst 241
                                        +v+l+++ +  l ++l+k  +   ++a+++ Gv    g+s  +++++g    +++++ + + +d+vv+++G +  +
   EGE24495.1 578 dqqacyqtkgalvepnyttpvrQVYLLQRSEGKLgKTLNKTTGWVHKAAIKQAGVIQIAGASYDKVTNEGL-WITIDGKSQLLRVDTVVLCIGQESVN 674
                  9999*****************99********9998888888887777777888**************8885.4478888888************9887 PP

                  HHC CS
                  xxx RF
  Pyr_redox_2 242 ell 244
                  +l 
   EGE24495.1 675 DLM 677
                  775 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.6   3.6e-09   2.2e-06       2      42 ..     405     445 ..     404     447 .. 0.94
   2 !   11.9   0.0    0.0001     0.064     110     252 ..     456     589 ..     445     630 .. 0.82
   3 ?   -0.4   0.0      0.56   3.5e+02     118     175 ..     626     685 ..     620     690 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.6e-09
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHC CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilis 42 
                  ++i++G+G AGl aA++aa+rg++V+++e+ +++g  + ++
   EGE24495.1 405 KIIIVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGGQFNMA 445
                  79*********************************988875 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.0001
                  HHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT--EEEEEEES--EE--HHHHHCG CS
  HI0933_like 110 divdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiPklGstgkgyklaeqfghtivplrpalvpltlkesklklk 207
                  + ++ + +++k+ +++++l+t+v ++  +++++ +v +    +    +++ ++ G+ +P++ s  +  +  + +g +++ l ++ ++++++e +    
   EGE24495.1 456 ETIRYFREQIKHLNITVHLNTKVDKAILNQSRADHVII---ATGVVPRMLPSLEGANLPQVISYSDLLTGKKIAGERVAVLGAGGIGFDVAEFLT--- 547
                  56889999******************999988888888...4556778999999************************************88766... PP

                  GGTT-EEEEEEE...ECTTEEEEEEEEE-SSEEESHHHHHHTTT- CS
  HI0933_like 208 elsGvslkavvlslkkkkkatekgellfThrGlsGpailqlSsyv 252
                    +G s+++ v  ++  k +    +  fTh+G++  a +q    +
   EGE24495.1 548 --HGSSVSDAVNDAT-YKPKAMDVDTFFTHWGVDQQACYQTKGAL 589
                  ..9******999884.5555566899*******999988876555 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.56
                  HHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS....-GGGT--SH CS
  HI0933_like 118 elkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlS....iPklGstgk 175
                  ++k+agv      +  +v++ e+  ++++  +++ l+ d++vl +G +S    +PklG t+k
   EGE24495.1 626 AIKQAGVIQIAGASYDKVTN-EGLWITIDG-KSQLLRVDTVVLCIGQESvndlMPKLGDTPK 685
                  56777777777777778833.333355555.88999***********995555588888776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   8.7e-13   5.4e-10       1      40 [.     408     447 ..     408     464 .. 0.88

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 8.7e-13
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev 40 
                    IvGaG++Gl+aA ++a +g++v+++e+++++GG+   ++v
     EGE24495.1 408 IVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGGQFNMAKV 447
                    9********************************9876655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.4   7.2e-05     0.045       1      32 [.     407     438 ..     407     444 .. 0.88
   2 !   20.8   0.1   3.1e-07   0.00019      84     206 ..     458     568 ..     441     601 .. 0.79
   3 ?   -3.5   0.0       7.8   4.8e+03     159     177 ..     680     698 ..     669     700 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.2e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg.ni 32 
                  iI+GaG aGl+aa+++   g  +++i E++ +i
   EGE24495.1 407 IIVGAGVAGLSAAVTAASRGH-QVTIYEQHtHI 438
                  8*******************9.799**999555 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 3.1e-07
  Pyr_redox_3  84 leYlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnk.lnipGeek.lvkhyskvkefhkyagqkvvViGgknSavDa 179
                   +Y+re  k+ ++ ++l+++V +              ++ +A++viiAtG    P++ ++ +G++  +v+ ys     +k+ag++v+V G++  ++D+
   EGE24495.1 458 IRYFREQIKHLNITVHLNTKVDKAIL-----------NQSRADHVIIATGV--VPRMlPSLEGANLpQVISYSDLLTGKKIAGERVAVLGAGGIGFDV 542
                  56666666666666666666644322...........3568**********..78762689***9557888888899********************* PP

  Pyr_redox_3 180 AlelvrkgaeVtvvtrgseiekeesdp 206
                  A e+  +g++V+ ++++++ + +  d+
   EGE24495.1 543 A-EFLTHGSSVSDAVNDATYKPKAMDV 568
                  9.7888999999888887777666555 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.8
  Pyr_redox_3 159 fhkyagqkvvViGgknSav 177
                  + ++ + ++ ViGg  S++
   EGE24495.1 680 LGDTPKADYQVIGGAKSSA 698
                  5567788999****99986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   2.4   1.3e-07   7.9e-05       1      77 [.     405     492 ..     405     496 .. 0.80
   2 !    9.5   0.2    0.0024       1.5       1      20 [.     529     548 ..     529     560 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.3e-07
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSH...........HHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDe...........easkilqeklekngievllntkveeiegsedgvesvk 77 
                 k+++vG+G+ gl +A ++a  g++Vt+ e + ++  +++            e+ ++++e++++++i+v+lntkv +   +++   +v 
  EGE24495.1 405 KIIIVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGGQFNMakvipgkeeffETIRYFREQIKHLNITVHLNTKVDKAILNQSRADHVI 492
                 799*******************************988885223333333334667779999999**********99988877666665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0024
                 EEEEECSSHHHHHHHHHHHH CS
   Pyr_redox   1 kvvvvGgGyiglElAgalae 20 
                 +v+v+G+G ig ++A++l++
  EGE24495.1 529 RVAVLGAGGIGFDVAEFLTH 548
                 79***************975 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.1   1.9e+03     287     341 ..     108     180 ..      78     194 .. 0.68
   2 !   30.3   1.6   3.7e-10   2.3e-07       2      41 ..     406     445 ..     405     446 .. 0.93
   3 ?   -1.9   0.0       2.2   1.4e+03     189     219 ..     485     514 ..     460     537 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
                    GGGS-HHHHHHHHH.HHHHTTTS.......CCBEEEE-TT.............SSHHHHHHHSHHHHHHHHHCC CS
  FAD_binding_2 287 nelasrdvvsrailekeiaeggs.......eanvyldash............gldaegleatleaineeaangl 341
                    +++ ++ +++ra+ ++++++  +       + +++++a +            ++ ++++++t++++ ++a+  +
     EGE24495.1 108 GDIVHHARITRAVHKHGAKILLQilhsgryGYHPFVVAPSpikspispfkprQMSQNNIQSTIDDYAHTAKL-A 180
                    555566666777776666666666666666667777777788888888888889999999999998877776.4 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 3.7e-10
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG- CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggataws 41 
                    +i++G+G+AGL+AA++aa +G++v++ e+    gg+  ++
     EGE24495.1 406 IIIVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGGQFNMA 445
                    79*****************************999987665 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.2
                    EEEESEEEE-----GG..........GSSSB CS
  FAD_binding_2 189 rirakavvlatgGfgrallkellgaaaeaet 219
                    ++ra++v++atg ++r +l +l ga   + +
     EGE24495.1 485 QSRADHVIIATGVVPR-MLPSLEGANLPQVI 514
                    6788899999999997.44454444444444 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   1.8   4.7e-10   2.9e-07       2      43 ..     406     447 ..     405     492 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 4.7e-10
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglv 43 
                   +++vG+g+aG+ AA++Aa +G +v + e++ ++GG++  + v
    EGE24495.1 406 IIIVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGGQFNMAKV 447
                   89**********************************977665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.7   6.1e-09   3.8e-06      27      78 ..     402     471 ..     391     516 .. 0.73
   2 ?   -2.0   0.2       2.9   1.8e+03      26      42 ..     525     541 ..     505     547 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 6.1e-09
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.....TTTCECEE.............H CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.....lgakfvev.............l 78 
                  +p k++++G+GvaGl+A+ ta++ g +Vt+++  ++   q++       +++f+e+              
   EGE24495.1 402 KPKKIIIVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGGQFNMakvipGKEEFFETiryfreqikhlniT 471
                  689*****************************99998888887666444455555544444444444440 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.9
                  B---EEEEESTSHHHHH CS
  AlaDh_PNT_C  26 vepakvlviGgGvaGlq 42 
                  ++  +v v+G+G  G  
   EGE24495.1 525 IAGERVAVLGAGGIGFD 541
                  557799******88876 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.081        50     189     216 ..     401     428 ..     364     439 .. 0.72
   2 !   17.8   0.0   2.4e-06    0.0015     132     213 ..     469     549 ..     449     570 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.081
  K_oxygenase 189 lakkriaVvGsGqSaaeifedllrrqkk 216
                  +++k+i++vG+G  +   +  +++r ++
   EGE24495.1 401 KKPKKIIIVGAGVAGLSAAVTAASRGHQ 428
                  5666666666666655555555555443 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.4e-06
  K_oxygenase 132 lltveskd..aegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrr 213
                    tv+ ++  ++   ++ +a ++++++G  p + + le  +  ++v+  s++l+ k  + a++r+aV G+G  + +++e l++ 
   EGE24495.1 469 NITVHLNTkvDKAILNQSRADHVIIATGVVPRMLPSLEGAN-LPQVISYSDLLTGK--KIAGERVAVLGAGGIGFDVAEFLTHG 549
                  344444442244456799**********9999888888888.59*********998..89***********9999999888765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   2.4   1.3e-07   8.1e-05       1      37 [.     405     441 ..     405     491 .. 0.71
   2 ?   -1.1   0.0       1.2   7.5e+02     111     150 ..     458     497 ..     443     506 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.3e-07
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT- CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldtiae 37 
                 ++i++G+G AG+ AA++aa +G++v+++ ++++  ++
  EGE24495.1 405 KIIIVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGGQ 441
                 69**************************777754444 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
                 EEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 111 leiieeeveeliveekkvkgvvtedgetikakavviatGt 150
                 +  ++e++++l+++ +  + v ++  ++ +a++v+iatG 
  EGE24495.1 458 IRYFREQIKHLNITVHLNTKVDKAILNQSRADHVIIATGV 497
                 5566777777777444444455555555667799***995 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   3.4   1.5e-07     9e-05       1      35 [.     405     440 ..     405     445 .. 0.93
   2 ?   -0.1   0.0       0.9   5.6e+02     153     205 ..     462     500 ..     453     521 .. 0.63
   3 ?   -2.1   0.3       3.6   2.2e+03       2      21 ..     530     548 ..     529     555 .. 0.81
   4 ?   -1.5   0.0       2.4   1.5e+03     156     207 ..     627     673 ..     588     707 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.5e-07
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsg 35 
                 +++i+G+G++Gls+A  +a rg  Vt++e++  +g g
  EGE24495.1 405 KIIIVGAGVAGLSAAVTAASRGhqVTIYEQHTHIG-G 440
                 59*******************99********8888.6 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.9
                 HHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH CS
         DAO 153 araaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd 205
                 +++++ l ++++++t+v +          + +     +++ad+v++a+G+  +
  EGE24495.1 462 REQIKHLNITVHLNTKVDKA--------IL-N-----QSRADHVIIATGVVPR 500
                 45555556666666666542........12.1.....123699*****97644 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.6
                 EEEECTSHHHHHHHHHHHHT CS
         DAO   2 vviiGGGiiGlstAyeLarr 21 
                 v++ G+G iG  +A +L ++
  EGE24495.1 530 VAVLGAGGIGFDVAEFL-TH 548
                 99********9888888.44 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2.4
                 HHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEE..EEEEEEE--GGGHHHH CS
         DAO 156 aealGveilegtevtgleeedgkvwgve.rttpgend..aadavVnaaGawsdll 207
                 ++++Gv  + g+   ++ +e  ++w     ++    +  ++d+vV++ G  s  +
  EGE24495.1 627 IKQAGVIQIAGASYDKVTNE--GLWITIdGKS----QllRVDTVVLCIGQES--V 673
                 35555666666555555333..2444322211....1224688888888765..3 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0053       3.3      36      73 ..     403     440 ..     392     496 .. 0.69
   2 !   11.1   0.0    0.0003      0.18      29      56 ..     520     547 ..     510     574 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0053
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73 
                    k++ i+G+G  G ++a ++++ g +v++y+++ +   
    EGE24495.1 403 PKKIIIVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGG 440
                   68999*************************99977444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0003
                   GSBS-GTTSEEEEES-SHHHHHHHHHHH CS
  2-Hacid_dh_C  29 llgkelsgktvGiiGlGrIGqavakrlk 56 
                   l+gk+++g++v+++G+G IG  va+ l+
    EGE24495.1 520 LTGKKIAGERVAVLGAGGIGFDVAEFLT 547
                   7899********************9987 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.9e-05     0.018       1      75 [.     405     480 ..     405     492 .. 0.72
   2 ?    3.5   0.0     0.092        57       2      21 ..     530     548 ..     529     564 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-05
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHH.HHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealek.alekieksleklvekgklkeeeveaalarisfttdlee 75 
                 k+ ++GaG+ G + a  +as+g++V++++ ++++  +  ++k+    e++ e  ++ +e+++++  +++ +t++++
  EGE24495.1 405 KIIIVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGGQfNMAKVIPGKEEFFETIRYFREQIKHLNITVHLNTKVDK 480
                 5789*************************98776433144555556666666666666666666666666666655 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.092
                 EEEE--SCCHHHHHHHHHHT CS
     3HCDH_N   2 vaviGaGtmGagiaavfasa 21 
                 vav+GaG +G  +a+ +  +
  EGE24495.1 530 VAVLGAGGIGFDVAEFL-TH 548
                 9************9865.44 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.3     2e+03      92     117 ..     250     276 ..     212     279 .. 0.66
   2 !   20.0   0.2   5.2e-07   0.00032      19      56 ..     405     441 ..     400     448 .. 0.93
   3 ?   -1.9   0.1       2.6   1.6e+03      14      38 ..     524     548 ..     515     556 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.3
                 EESEHHHHHHHH.HHHHHTSTTEEEEE CS
        Thi4  92 vvkdaalftstl.lskvlqlanvklln 117
                 +v+d a +   + l+k+l+la+v ++n
  EGE24495.1 250 LVEDGATMQDVItLAKALELAGVSIIN 276
                 566666666554268999999999998 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 5.2e-07
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailersvspGGG 56 
                  ++ivGaG +GL+aa + a + + +v+i e++  +GG 
  EGE24495.1 405 KIIIVGAGVAGLSAAVTAASR-GHQVTIYEQHTHIGGQ 441
                 69*****************99.**************95 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.6
                 HHTEEEEEEE--SHHHHHHHHHHHH CS
        Thi4  14 kyaesDvvivGaGssGLtaayylak 38 
                 k+a   v++ GaG  G   a  l++
  EGE24495.1 524 KIAGERVAVLGAGGIGFDVAEFLTH 548
                 56777899********999988875 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.1e-06    0.0031       2      47 ..     404     445 ..     403     488 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.1e-06
                 -EEEEE--SHHHHHHHHHHHHTT---GGGEEEE-SS---------- CS
        MCRA   2 kkaylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldga 47 
                 kk+ +vG+G+a+L+aAv     a  +g++++i+e++++ gg+++ a
  EGE24495.1 404 KKIIIVGAGVAGLSAAV----TAASRGHQVTIYEQHTHIGGQFNMA 445
                 6889************9....7999****************98776 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.3   9.6e-05     0.059       4      34 ..     406     436 ..     404     442 .. 0.93
   2 ?    0.1   0.0      0.59   3.7e+02       4      42 ..     530     565 ..     528     571 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.6e-05
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    ++IVGaG aGl++a   +++G +v++ e+++
     EGE24495.1 406 IIIVGAGVAGLSAAVTAASRGHQVTIYEQHT 436
                    79************************99996 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.59
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS- CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpra 42 
                    V++ GaG  G+  a +L+     + + +  ++++++p+a
     EGE24495.1 530 VAVLGAGGIGFDVAEFLTHG---SSVSDAVNDATYKPKA 565
                    99***************865...5555666666666666 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   3.9e-05     0.024       1      28 [.     413     440 ..     413     445 .. 0.95
   2 ?   -1.7   0.0       2.2   1.3e+03     241     261 ..     472     496 ..     460     498 .. 0.72
   3 ?   -3.3   0.0       6.7   4.1e+03     238     274 ..     645     680 ..     641     687 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.9e-05
                    HHHHHHHHHHHHTTEEEEEEESSSSSBT CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEardrvGG 28 
                    +aGL+aA + +s+G++Vt++E   ++GG
     EGE24495.1 413 VAGLSAAVTAASRGHQVTIYEQHTHIGG 440
                    69*************************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.2
                    EEEEETTSTEE....EESEEEE-S- CS
  Amino_oxidase 241 vtvtledgevv....eaDaVvvTvp 261
                    v ++++  + +    +aD+V++++ 
     EGE24495.1 472 VHLNTKVDKAIlnqsRADHVIIATG 496
                    5566665555577779******985 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 6.7
                    TTCEEEEETTSTEE..EESEEEE-S-HHHHHSSEEESCC CS
  Amino_oxidase 238 gdgvtvtledgevv..eaDaVvvTvplgvlkailfsPpl 274
                    ++g ++t+ dg+++  ++D Vv+++ +  ++   + P+l
     EGE24495.1 645 NEGLWITI-DGKSQllRVDTVVLCIGQESVN--DLMPKL 680
                    56777766.5555559********9998888..555555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0031       1.9       2      39 ..     408     440 ..     407     446 .. 0.82
   2 ?    0.4   0.0      0.96   5.9e+02     140     154 ..     482     496 ..     456     498 .. 0.69
   3 ?    4.3   0.0     0.057        35     130     155 ..     644     670 ..     619     671 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0031
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdpsep.gag 39 
                    ivGaG++Gl+++   ++r      +++t+++++++ g g
     EGE24495.1 408 IVGAGVAGLSAAVTAASR-----GHQVTIYEQHTHiG-G 440
                    9***********998888.....59999999987724.4 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.96
  NAD_binding_9 140 dgaslaadaVvLAlG 154
                      ++ +ad+V++A+G
     EGE24495.1 482 ILNQSRADHVIIATG 496
                    446789********9 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.057
  NAD_binding_9 130 radgqavlladgasl.aadaVvLAlGh 155
                    +++g +++ +++++l ++d VvL++G+
     EGE24495.1 644 TNEGLWITIDGKSQLlRVDTVVLCIGQ 670
                    5677788888777755*********97 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.8e-05     0.055       2      42 ..     404     444 ..     403     458 .. 0.92
   2 ?   -2.3   0.0       1.8   1.1e+03     180     204 ..     524     548 ..     511     551 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.8e-05
    FMO-like   2 kkvaviGaGvsGlasikccleegleptcfersddiGGlwrf 42 
                 kk+ ++GaGv+Gl++  +    g + t +e+   iGG +++
  EGE24495.1 404 KKIIIVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGGQFNM 444
                 99***********************************8765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
    FMO-like 180 vfkgkrvlviGlGnsggdiavelsr 204
                    g rv v+G G  g d+a  l++
  EGE24495.1 524 KIAGERVAVLGAGGIGFDVAEFLTH 548
                 5678999999999999999977665 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.13        79     100     192 ..     323     417 ..     299     464 .. 0.58
   2 ?    8.3   0.1    0.0021       1.3      14      37 ..     523     546 ..     512     551 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.13
                 CCS-HHHHTT-..SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEE..EE.......CCS-ECTSS-TGGS.EECCCCEEHHHHHHCTE- CS
                 xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 100 etvleellesv..DlVvdalDniearrlvnracvkkgiplieagtlgfegqvvvi..ip.......gktgcyeCldpsstedptekkvplctsiagnip 187
                 +t +ee+l+s   DlV  a   +++  +vn+a+ +++  li+ ++ g++ ++  +  ++       +  +c+e +    + +pt+k   ++  i+g   
  EGE24495.1 323 QT-AEEILSSGqaDLVQMARPFLADSDWVNKAASNQA-HLIN-TCIGCNQACLDHtfANqrasclvNPLACFESEI---SVKPTKKPKKII--IVGA-G 412
                 44.4555554434777777777777777777765444.5666.555555555444221122344445555555554...466666666666..5552.1 PP

                 B-HHH CS
                 xxxxx RF
        ThiF 188 aiatt 192
                 + + +
  EGE24495.1 413 VAGLS 417
                 12222 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0021
                 HHHHTSEEEEE--SHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  14 ekLrdskvllvGaGglGsellknL 37 
                 +k++  +v+++GaGg+G  +++ L
  EGE24495.1 523 KKIAGERVAVLGAGGIGFDVAEFL 546
                 79999************9998876 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       7.2   4.5e+03      72      98 ..     288     314 ..     284     319 .. 0.81
   2 ?    7.4   0.1    0.0065         4       1      33 [.     405     443 ..     405     502 .. 0.71
   3 ?    1.9   0.0      0.32   1.9e+02       2      20 ..     530     548 ..     529     567 .. 0.86
   4 ?    0.8   0.0      0.71   4.4e+02      53     104 ..     644     695 ..     610     709 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.2
                     EEEE---HHHHHHHHHHHCCC--TT-E CS
  NAD_Gly3P_dh_N  72 iivlvvPsqalrevlkklkgllkkkai 98 
                     +iv  vP +a+++  + +k+ ++  +i
      EGE24495.1 288 TIVTSVPRAAFTRYTAAVKHAINIPVI 314
                     68999****999999999998876555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0065
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-H......H CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvree......e 33 
                     ki ++GaG  G + A + a++gh+v+++ ++       +
      EGE24495.1 405 KIIIVGAGVAGLSAAVTAASRGHQVTIYEQHThiggqfN 443
                     799*************************99985666662 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.32
                     EEEE--SHHHHHHHHHHHT CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlae 20 
                     +avlGaG  G  +A  l++
      EGE24495.1 530 VAVLGAGGIGFDVAEFLTH 548
                     9*************99875 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.71
                     --TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT-EEEE--- CS
  NAD_Gly3P_dh_N  53 lpenlvattdlaealkgadiivlvvPsqalrevlkklkgllkkkailvsliK 104
                      +e l +t d ++ l ++d++vl + ++ +++ + kl ++ k++ +++  +K
      EGE24495.1 644 TNEGLWITIDGKSQLLRVDTVVLCIGQESVNDLMPKLGDTPKADYQVIGGAK 695
                     45778888899999999************************99999998777 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00085      0.52       2      93 ..     178     281 ..     177     314 .. 0.82
   2 ?   -1.8   0.0       2.7   1.7e+03     169     188 ..     451     470 ..     434     497 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00085
                   HHHHHCT-SEEEEECCTCSHHHHC...................HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHH CS
  AP_endonuc_2   2 aaaaeaGfdgvElfgrdlvpvsel...................sdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraiela 79 
                   ++a++aG+dgvE+ g++++ + +                     + +++ +r+  +++g+  + +++      ++e     +     + +++ i la
    EGE24495.1 178 KLAKKAGYDGVEIMGSEGYLINQFlsartnkrtdsyggslenrMRFAIEVVRAVRKAAGMD-FIITFRLSMIELVE-----D----GATMQDVITLA 264
                   689******************8778999999999999999888888899999999999999.78888888888777.....4....56889999999 PP

                   HHH...TBSEEEEEBCC CS
  AP_endonuc_2  80 aaL...GapllvlhpGt 93 
                   +aL   G+ ++++++G 
    EGE24495.1 265 KALelaGVSIINTGIGW 281
                   88888899999999993 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.7
                   TTTHHHHHHHHHGGEEEEEE CS
  AP_endonuc_2 169 eedvddalraladrikhvHi 188
                   +e + +++r + + ikh+ i
    EGE24495.1 451 KEEFFETIRYFREQIKHLNI 470
                   55555566666666666555 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00045      0.28       2      33 ..     405     436 ..     404     493 .. 0.82
   2 ?   -1.9   0.0       3.4   2.1e+03       2      20 ..     529     547 ..     528     557 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00045
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-H CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDide 33 
                     ki ++G+G  Gl  a+  a++gh+v++    +
      EGE24495.1 405 KIIIVGAGVAGLSAAVTAASRGHQVTIYEQHT 436
                     89***********************9876555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.4
                     EEEEE--STTHHHHHHHHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavla 20 
                     +++v+G+G +G   a  l 
      EGE24495.1 529 RVAVLGAGGIGFDVAEFLT 547
                     7899999999987776654 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       9.2   5.7e+03      94     116 ..     257     279 ..     232     293 .. 0.82
   2 ?   10.4   0.2   0.00088      0.54       2      75 ..     406     484 ..     405     499 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 9.2
                    HHHHHHHHHHHHHTT-EEEEEEE CS
  NAD_binding_2  94 pedtrelakelkekglkfldaPV 116
                    ++d + lak+l+ +g++++++++
     EGE24495.1 257 MQDVITLAKALELAGVSIINTGI 279
                    56777888888888888888876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00088
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.....EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.....akaaesieelvasldvvitmvkagkavdevieg 75 
                    i ++G Gv G + a   +++g++v++y+ ++    ++  ++      + +e+i+ + ++++   + v+ +++vd+ i +
     EGE24495.1 406 IIIVGAGVAGLSAAVTAASRGHQVTIYEQHTHIGGQFNMAKvipgkEEFFETIRYFREQIKHLNITVHLNTKVDKAILN 484
                    779*************************998655555444434444888999999999999999999999999887765 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       3.9   2.4e+03      19      70 ..     297     366 ..     290     386 .. 0.58
   2 ?   11.1   0.2   0.00067      0.42       7      89 ..     403     493 ..     400     498 .. 0.67
   3 ?    1.5   0.2      0.64   3.9e+02      55      75 ..     654     674 ..     523     680 .. 0.47

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.9
  NAD_binding_7  19 Aarkvrklleagakvtvvapevkeele..............elvklaeeel..ekd.....legadlviaatd 70 
                    A ++    ++   ++ v+a +    ++              +lv++a+  l  +++      ++a+l+ +++ 
     EGE24495.1 297 AFTRYTAAVKHAINIPVIAANR---INmpqtaeeilssgqaDLVQMARPFLadSDWvnkaaSNQAHLINTCIG 366
                    6777777788888888888774...222233444555655555555544444333322222334667666664 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00067
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapev....keeleelvklae......eelekdlegadlviaatddrelneriaeaakarrilv 89 
                     kk+++vG+G  +++ + + ++ g +vt++ + +    + ++ + +  +e      +++++++   +l i++  ++++ ++i ++ +a ++ +
     EGE24495.1 403 PKKIIIVGAGVAGLSAAVTAASRGHQVTIYEQHThiggQFNMAKVIPGKEeffetiRYFREQI--KHLNITVHLNTKVDKAILNQSRADHVII 493
                    589**************************9999644432222222222231111113345555..4577777778888888888888877765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.64
  NAD_binding_7  55 lekdlegadlviaatddreln 75 
                     +++l ++d+v+ ++ ++++n
     EGE24495.1 654 GKSQLLRVDTVVLCIGQESVN 674
                    244466677777777777776 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.7     0.001      0.64      63     162 ..     228     333 ..     223     341 .. 0.84
   2 ?    0.0   0.0       0.8   4.9e+02      88     112 ..     333     357 ..     329     366 .. 0.83
   3 ?   -2.9   0.0       6.2   3.9e+03     111     137 ..     482     508 ..     474     515 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.001
                   HHHHHH.TT-SEEEES-HHHHHH....HHHTT--EEEEEE.--SHHHHHHHHHHHHHHT-SEEEEESGGG.HHHHCTSTTS...EEEEESS--SHHH CS
  G3P_antiterm  63 veflkkeikvdGiistksslikk....akklglltiqrlf.liDssalekalkqiekskpdavevlPglv.pkvikeikkelkipiiaGGLietked 153
                   v+ ++k +++d ii+ + s+i+     a  ++++t+ +   l   s +++++   e+  p +v  +P  +  ++++++k++++ip+ia+  i+  ++
    EGE24495.1 228 VRAVRKAAGMDFIITFRLSMIELvedgATMQDVITLAKALeLAGVSIINTGIGWHEARIPTIVTSVPRAAfTRYTAAVKHAINIPVIAANRINMPQT 324
                   666778889999999999999863333566888888886537778889999999999***********999************************** PP

                   HHHHCTT.S CS
  G3P_antiterm 154 veealkaGa 162
                    ee+l++G 
    EGE24495.1 325 AEEILSSGQ 333
                   *****9995 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.8
                   HTT--EEEEEE--SHHHHHHHHHHH CS
  G3P_antiterm  88 klglltiqrlfliDssalekalkqi 112
                   +++l+ + r fl Ds+ ++ka ++ 
    EGE24495.1 333 QADLVQMARPFLADSDWVNKAASNQ 357
                   678999**********999987654 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6.2
                   HHHHHT-SEEEEESGGGHHHHCTSTTS CS
  G3P_antiterm 111 qiekskpdavevlPglvpkvikeikke 137
                    +++s++d v +  g+vp+++ +++ +
    EGE24495.1 482 ILNQSRADHVIIATGVVPRMLPSLEGA 508
                   578889999999999999988877655 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2      0.26   1.6e+02       1      29 [.     406     434 ..     406     438 .. 0.85
   2 ?    4.0   0.1     0.094        58      73     115 ..     451     493 ..     444     494 .. 0.87
   3 ?    3.0   0.0      0.19   1.2e+02       1      21 [.     530     550 ..     530     560 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.26
                 EEEES-SHHHHHHHHHHHHTTEEEEEEES CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidk 29 
                 iii+G+G  G s a +  ++g++v++ ++
  EGE24495.1 406 IIIVGAGVAGLSAAVTAASRGHQVTIYEQ 434
                 89************999995557998665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.094
                 HHHHHHHHHHHHHHTSSSEEEEEESSGGGHHHHHHHTTSEEEE CS
      TrkA_N  73 deanilavllakelnpkkkiiaraqdpehaellkklgadvvis 115
                 +e+   ++ + +e  ++++i +  +++ ++ +l++  ad+vi 
  EGE24495.1 451 KEEFFETIRYFREQIKHLNITVHLNTKVDKAILNQSRADHVII 493
                 56666788899999999************************95 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.19
                 EEEES-SHHHHHHHHHHHHTT CS
      TrkA_N   1 iiiiGlGrvGrslaeeLsegg 21 
                 ++++G+G +G  +ae L++g+
  EGE24495.1 530 VAVLGAGGIGFDVAEFLTHGS 550
                 68***************9876 PP

>> Myco_arth_vir_N  Mycoplasma virulence signal region (Myco_arth_vir_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.3    0.0015      0.91       5      25 ..     401     421 ..     399     424 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0015
  Myco_arth_vir_N   5 KKKKikIltlalvaaLlaalt 25 
                      KK K+ I+++a va L aa+t
       EGE24495.1 401 KKPKKIIIVGAGVAGLSAAVT 421
                      9*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 4967.20
//
Query:       EGE24496.1  [L=504]
Description: competence protein comM [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-94  315.4   0.0      2e-94  314.8   0.0    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.4e-42  144.4   0.0    3.5e-42  143.1   0.0    1.8  2  ChlI             Subunit ChlI of Mg-chelatase
    1.1e-29  102.9   5.1    3.1e-29  101.5   5.1    1.8  1  Mg_chelatase_C   Magnesium chelatase, subunit ChlI C-terminal
      4e-09   36.6   0.0    1.5e-08   34.7   0.0    1.9  1  AAA_5            AAA domain (dynein-related subfamily)
    1.1e-07   31.2   0.0    4.4e-07   29.2   0.0    2.0  2  MCM              MCM P-loop domain
      2e-07   30.9   0.0    1.7e-06   27.9   0.0    2.2  1  Sigma54_activat  Sigma-54 interaction domain
     0.0049   17.3   0.0      0.024   15.0   0.0    2.2  2  AAA_16           AAA ATPase domain
     0.0078   15.7   0.0       0.67    9.4   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.011   14.6   0.8       0.82    8.4   0.6    2.6  3  AAA_32           AAA domain
      0.016   14.4   0.0      0.024   13.8   0.0    1.2  1  PIF1             PIF1-like helicase
       0.03   14.2   0.0        1.7    8.5   0.0    2.5  2  AAA_3            ATPase family associated with various cellul
      0.033   14.6   0.5       0.21   12.0   0.1    2.6  3  AAA              ATPase family associated with various cellul
      0.056   13.8   1.3       0.13   12.6   1.3    1.5  1  DUF3619          Protein of unknown function (DUF3619)
        0.1   12.9   0.0       0.59   10.4   0.0    2.3  1  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.8   0.0   1.6e-97     2e-94       1     205 [.     203     404 ..     203     406 .. 0.98

  Alignments for each domain:
  == domain 1  score: 314.8 bits;  conditional E-value: 1.6e-97
  Mg_chelatase   1 dlkdvkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekllkrrpfraphhsaskaalvGggskp 97 
                   dl+dvkGq++a+raleiaaaGgH+ll++G+pGsGKt++a+rlps+lppl+++e+leva+i+s+ag    + ++ +rpfra hh++s++alvGggskp
    EGE24496.1 203 DLADVKGQHHARRALEIAAAGGHSLLFTGSPGSGKTLMASRLPSILPPLTDAETLEVASIYSIAG---VNYAFGERPFRAVHHTISATALVGGGSKP 296
                   89***************************************************************...778899*********************** PP

  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklkdkekectcsekeierYlsklsgplldRid 194
                   kpGeislah+G +fLDE+pef+rk+le+LR+P+e++++tisra+a+v+fpa+fql+aamNpcpcg+++d++++c+c +++i++Y++klsgplldRid
    EGE24496.1 297 KPGEISLAHKGAIFLDEIPEFDRKTLETLRQPIESKQITISRANAQVSFPADFQLIAAMNPCPCGYYGDTTNRCRCRPEQIKKYQDKLSGPLLDRID 393
                   ************************************************************************************************* PP

  Mg_chelatase 195 lqvevkkleae 205
                   l+++v++l  e
    EGE24496.1 394 LHITVPALPIE 404
                   *****998766 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.0   2.8e-45   3.5e-42       1     112 [.      21     134 ..      21     147 .. 0.93
   2 ?   -3.6   0.0       7.4   9.5e+03      32      54 ..     321     343 ..     319     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 143.1 bits;  conditional E-value: 2.8e-45
        ChlI   1 vevdvskglpkftivGlpdtavkeskervrsalknsgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieae..eetlflGeLsldGslrpv 97 
                 vev++s+glp++tivGlp+++v+esk+rvrsal nsg+efp++++t+nLaPadl+k+G+++DLpiA+gilaa++qi+ +  +++ f+GeL+l+G+lrpv
  EGE24496.1  21 VEVHLSQGLPALTIVGLPEASVRESKDRVRSALINSGYEFPNRRLTINLAPADLPKDGARLDLPIAMGILAASGQIDDKvlAQFEFVGELALNGELRPV 119
                 8***********************************************************************9999887779***************** PP

        ChlI  98 kgvlpialaakkegi 112
                 +g+l+ia a k++ +
  EGE24496.1 120 SGALAIARAIKSSPC 134
                 *******99887654 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7.4
        ChlI  32 alknsgfefpakkitvnLaPadl 54 
                 +l++    +++k+it++ a a++
  EGE24496.1 321 TLETLRQPIESKQITISRANAQV 343
                 56777788899999998887765 PP

>> Mg_chelatase_C  Magnesium chelatase, subunit ChlI C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   5.1   2.4e-32   3.1e-29       1      93 []     412     504 .]     412     504 .] 0.99

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 2.4e-32
  Mg_chelatase_C   1 gesSaevrerVaaAreiqkeRfakenaelsgeelrevceldeeaeelleeaierlglsaRaydrilkvArTiADLegseeieeehlaeAlqyR 93 
                     gesS +vr+rV+aAr+++ +R++k+n el+ +el++++ l ++++++l+ a ++l+lsaR+y+ril+vArTiADL++se+i+++h+aeAl+yR
      EGE24496.1 412 GESSDDVRQRVVAARNMAIARQGKANYELTVNELDQFAILGQKEQQMLKMAQSKLNLSARSYHRILRVARTIADLAASEHIKTAHVAEALSYR 504
                     69********************99********************************************************************9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.2e-11   1.5e-08       2     124 ..     227     359 ..     226     368 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.2e-11
                 EEEE--SSSSHHHHHHHGGGGB.....S--EEEEE--TT--HHHHH--B--.........--------..........G-SEEEEESGGG--HHHHHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.....nreveyvqltrdtteedlkgrreikngttslvdsplvraar..........egeilvlDEveraesevlnsL 85 
                 +l  G pG+gK+ +a rl + l       ++e+  +++    +  +g+r ++  +   +  +lv  +           ++  ++lDE+ + ++++l++L
  EGE24496.1 227 LLFTGSPGSGKTLMASRLPSILppltdAETLEVASIYSIAGVNYAFGERPFRAVHHTISATALVGGGSkpkpgeislaHKGAIFLDEIPEFDRKTLETL 325
                 7999*******************988656666666777777888888888888888888888886666**********999****************** PP

                 HHHHHSSEEE..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  86 lslleerrllleeggelvkaknddllerfrviatanpld 124
                  +++e +++ +   + +v++++d     f++ia++np +
  EGE24496.1 326 RQPIESKQITISRANAQVSFPAD-----FQLIAAMNPCP 359
                 *********************98.....********987 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.3   2.9e+03      53      75 ..     220     242 ..     200     250 .. 0.66
   2 !   29.2   0.0   3.4e-10   4.4e-07     114     203 ..     298     397 ..     290     409 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.3
                 BBCSS-EEEEEESSTSTHHHHHH CS
         MCM  53 klrgdinvllvgdpgtaKsqlLk 75 
                    g   +l+ g pg +K+ +  
  EGE24496.1 220 AAAGGHSLLFTGSPGSGKTLMAS 242
                 45566678888999999987655 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 3.4e-10
                 ETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--S.SSSCCTTS-....HHHHS.....SSSHHHHHHSSEEE CS
         MCM 114 aGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpk.agrydkkks....vaeni.....nlsaalLsrFDlif 202
                  G + la+kG + +De+ + ++++ ++l   +E+++i+i++a  +++ +a   ++aA+np   g y ++++      e+i     +ls +lL+r Dl +
  EGE24496.1 298 PGEISLAHKGAIFLDEIPEFDRKTLETLRQPIESKQITISRANAQVSFPADFQLIAAMNPCpCGYYGDTTNrcrcRPEQIkkyqdKLSGPLLDRIDLHI 396
                 78899*******************************************************954555433221111223332222268888888888876 PP

                 E CS
         MCM 203 v 203
                 +
  EGE24496.1 397 T 397
                 5 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.3e-09   1.7e-06      11     142 ..     213     356 ..     205     359 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.3e-09
                      HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH.......HSTTTTS-EEEEETT..TS-TTCHHHHHHEBSSSSSTTTSS-BE.HHHHHTTT CS
  Sigma54_activat  11 lleqikkvaktdlsvlitGesGtGKellaraihe.......askrkekpfvavnca..aipeelleseLFGhekGaFtGAekekk.Glfekadg 94 
                      +++ ++ +a+   s+l tG  G+GK+l+a+ + +       a++ + +++ ++     a+ e+ +++    +++ a  G  ++ k G ++ a++
       EGE24496.1 213 ARRALEIAAAGGHSLLFTGSPGSGKTLMASRLPSilppltdAETLEVASIYSIAGVnyAFGERPFRAVHHTISATALVGGGSKPKpGEISLAHK 306
                      55566677777899*****************9887666543222222222222222234566777777788888998877665555******** PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEE..SBTSSSEEE--EEEEEEES CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegeve..rvGsskeikvdvriiaatn 142
                      G +fLDei e++ ++ e L + +++++++  r  ++ + ++d+++iaa n
       EGE24496.1 307 GAIFLDEIPEFDRKTLETLRQPIESKQITisRANAQVSFPADFQLIAAMN 356
                      ************************99875227777788999******987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.9e-05     0.024      13      49 ..     214     248 ..     210     290 .. 0.82
   2 ?   -2.4   0.0       4.1   5.2e+03     138     156 ..     308     326 ..     301     336 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
      AAA_16  13 lsalervrsgrpelvllsGesGvGKsslvrellrale 49 
                 ++ale +++g+ +++l++G +G+GK+ ++ +l+  + 
  EGE24496.1 214 RRALEIAAAGG-HSLLFTGSPGSGKTLMASRLPS-IL 248
                 67888777776.9****************99995.43 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.1
      AAA_16 138 vlvlDdlqwadeaslqlla 156
                  ++lD++  +d  +l+ l+
  EGE24496.1 308 AIFLDEIPEFDRKTLETLR 326
                 6999999999999999887 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00053      0.67      26      56 ..     217     247 ..     210     260 .. 0.83
   2 ?    3.8   0.0     0.029        37     120     157 ..     319     357 ..     310     371 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00053
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkk 56 
                 le   + ++++l++G+ G+GKt+++++l + 
  EGE24496.1 217 LEIAAAGGHSLLFTGSPGSGKTLMASRLPSI 247
                 566677899***************9987655 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.029
       AAA_7 120 qppiellRqlldygg.wYdrkklefkeikdvqlvaamgp 157
                 ++++e lRq ++ +    +r + ++    d ql+aam+p
  EGE24496.1 319 RKTLETLRQPIESKQiTISRANAQVSFPADFQLIAAMNP 357
                 578999****99887357788999999***********9 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.024        31       6      50 ..     203     244 ..     199     247 .. 0.87
   2 ?   -1.6   0.0      0.68   8.7e+02     326     375 ..     297     345 ..     280     352 .. 0.67
   3 ?    8.4   0.6   0.00064      0.82     469     509 ..     462     502 ..     452     504 .] 0.91

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.024
      AAA_32   6 pleeiigqeRAvealefglkikkkgYNifvlGesgtGrttlvkrl 50 
                 +l+++ gq+ A +ale++    + g+ +  +G++g+G+t +++rl
  EGE24496.1 203 DLADVKGQHHARRALEIAA---AGGHSLLFTGSPGSGKTLMASRL 244
                 5778899********9996...5699*************999875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.68
      AAA_32 326 kaGaLhkAnGGyLildaedlLeeplaWeaLkraLrskeikiesleeqlgl 375
                 k+G +  A+ G + ld    + +  + e+L++ ++sk+i+i+  + q+++
  EGE24496.1 297 KPGEISLAHKGAIFLDEIPEFDR-KTLETLRQPIESKQITISRANAQVSF 345
                 56666666666666655554443.34578888888888888877777765 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00064
      AAA_32 469 dqeklstrfseiadllrEAdywakkegaevveaehVekAle 509
                  q kl ++ ++   +lr A ++a+ +++e ++ +hV +Al+
  EGE24496.1 462 AQSKLNLSARSYHRILRVARTIADLAASEHIKTAHVAEALS 502
                 6899***********************************97 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.9e-05     0.024      18     124 ..     220     327 ..     208     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
                 ..HCTS-EEEEESTTSSCHHHHHHHHHHCHC.TCCCEEEEESS.HHHHHCC.TSEECHHHHT-TTSSS-HHHHHHHTSCCCHHHHHC-SEEEEECGGGS CS
        PIF1  18 lnekgklfFvtGsgGtgKtflwkallkklrs.egkivlavAss.GvAalllegGrtahsrfkiplekdeestckikrgsklaellkktsliiwDEapmv 114
                  +  g+++ +tGs G+gKt +  +l ++l + ++  +l vAs   +A ++   G      ++  ++++       k++  + +l ++  +i +DE+p  
  EGE24496.1 220 AAAGGHSLLFTGSPGSGKTLMASRLPSILPPlTDAETLEVASIySIAGVNYAFGERPFRAVHHTISATALVGGGSKPKPGEISL-AHKGAIFLDEIPEF 317
                 5667999**********************9989999*****9648******999998888888888877777788888887765.55678999****** PP

                 BHHHHHHHHH CS
        PIF1 115 erecfealdr 124
                 +r+ +e+l +
  EGE24496.1 318 DRKTLETLRQ 327
                 ******9965 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.082   1.1e+02       2      22 ..     227     247 ..     225     252 .. 0.85
   2 ?    8.5   0.0    0.0013       1.7      66     113 ..     309     358 ..     298     364 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.082
       AAA_3   2 vllegvPGlaktllvkalaka 22 
                 +l++g PG +ktl+++ l ++
  EGE24496.1 227 LLFTGSPGSGKTLMASRLPSI 247
                 57899**********998766 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0013
       AAA_3  66 lladeinrappktqsalleameerqvtvegeth..klpepflvlatqnPi 113
                 ++ dei     kt  +l + +e +q+t+++++   ++p  f ++a+ nP 
  EGE24496.1 309 IFLDEIPEFDRKTLETLRQPIESKQITISRANAqvSFPADFQLIAAMNPC 358
                 6679************************987651156889********96 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00016      0.21       1      23 [.     227     253 ..     227     356 .. 0.61
   2 ?   -2.1   0.0       3.9     5e+03     112     131 ..     381     399 ..     378     400 .. 0.87
   3 ?   -1.7   0.0       2.8   3.6e+03      40      74 ..     412     452 ..     401     469 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
                 EEEESSTTSSHHHHHHHHHHHH....T CS
         AAA   1 vllyGppGtGKTllakavakel....g 23 
                 +l++G pG GKTl+a+ + + l    +
  EGE24496.1 227 LLFTGSPGSGKTLMASRLPSILppltD 253
                 699************998877644442 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.9
                 GGGSTHHHHSTTSSEEEETT CS
         AAA 112 pdkldpallrgRfdrkieie 131
                  dkl+ +ll +R+d +i ++
  EGE24496.1 381 QDKLSGPLL-DRIDLHITVP 399
                 689999***.*****99886 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.8
                 THHHHHHHHHHHHHHHTS......TSEEEEEETGGGHHHHH CS
         AAA  40 gesekkirelfkeakeka......kpsilfiDEidalaksr 74 
                 ges++++r+ + +a+++a      +   l + E+d++a   
  EGE24496.1 412 GESSDDVRQRVVAARNMAiarqgkANYELTVNELDQFAILG 452
                 77788888888777777766666333556666666665444 PP

>> DUF3619  Protein of unknown function (DUF3619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.3   9.9e-05      0.13      21      99 ..     415     497 ..     401     502 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.9e-05
     DUF3619  21 pediaeRLaaAReqAlarkkpe..aaaravaaalalagagasltlgeee..agswlrrlalalpllalvvgLvgiaywqdqqr 99 
                 ++d+ +R  aAR++A+ar+ +   + + +   + a+ g++++ +l++++   +  +r+++++l ++  ++ L++ +++++ + 
  EGE24496.1 415 SDDVRQRVVAARNMAIARQGKAnyELTVNELDQFAILGQKEQQMLKMAQskLNLSARSYHRILRVARTIADLAASEHIKTAHV 497
                 6899**************98665545555667788888888877555544344555668999999999999999888877665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00046      0.59       6      31 ..     225     250 ..     221     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00046
      AAA_22   6 gilvvtGesGtGKTtllrrlleqlde 31 
                  +l+ tG +G+GKT+ + rl + l+ 
  EGE24496.1 225 HSLLFTGSPGSGKTLMASRLPSILPP 250
                 57899*************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3594.80
//
Query:       EGE24497.1  [L=954]
Description: ATP-dependent helicase HepA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.4e-116  387.5   0.8   7.3e-116  387.1   0.8    1.2  1  RapA_C        RNA polymerase recycling family C-terminal
    9.8e-22   76.6   0.0      2e-21   75.6   0.0    1.6  1  Tudor_1_RapA  RapA N-terminal Tudor like domain 1
      5e-14   52.6   0.0    1.5e-13   51.1   0.0    1.9  2  Helicase_C    Helicase conserved C-terminal domain
    9.4e-13   48.1   0.0      2e-12   47.1   0.0    1.6  1  Tudor_RapA    RapA N-terminal Tudor like domain
    8.8e-11   42.1   0.0    6.8e-10   39.2   0.0    2.2  2  ResIII        Type III restriction enzyme, res subunit
    4.6e-10   38.8   0.0    7.7e-10   38.0   0.0    1.2  1  SNF2_N        SNF2 family N-terminal domain
    1.7e-05   24.7   0.0    3.6e-05   23.6   0.0    1.5  1  DEAD          DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.044   13.7   0.0       0.16   11.9   0.0    1.9  2  Asp_decarbox  Aspartate decarboxylase


Domain annotation for each model (and alignments):
>> RapA_C  RNA polymerase recycling family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.1   0.8  3.3e-119  7.3e-116       1     360 []     583     950 ..     583     950 .. 0.98

  Alignments for each domain:
  == domain 1  score: 387.1 bits;  conditional E-value: 3.3e-119
                 -EEEEEEEETTSHHHHHHHHHHHHH-TTTS--TTSHHHHTTSHHHHHHHHHS....---STTHHHHHHHHHHHHHHHHHSTTT--HHHHHHTT-SHHHH CS
      RapA_C   1 diqihVPylegsaqevllrWYhegLnafeetcpagqavyeefkeeLeellak....edeealeeLiaetraerealkaeleqGRDrLLElnScrpekae 95 
                 +i++hVP++ g+aqe+l++WY+ +Ln+f++++p++q+v+++f +eL++ll++    +++e+l++Lia+++ +r+al+++l++GRDrLLE+nScrp++a+
  EGE24497.1 583 QIKLHVPFVMGTAQERLYNWYDGALNIFNQISPTAQSVQDAFIAELKPLLQGadtpQNRENLATLIAQASIYRQALEEALQAGRDRLLEYNSCRPNVAA 681
                 69*************************************************9876559***************************************** PP

                 HHHHHHHCCC--TTHHHHCHHHHHHHTEEEE--SSSSEEEEE-STT-.....-TT-S--S--EE-S-HHHHTTS-S---STTSTHHHHHHHHHTT--SS CS
      RapA_C  96 elveaiaeedndteleeflerlfdaigveqedkseksivlrpsehml.....veafpglpedGltvTfdRetAlareDvqFltwehPlvrgaldlilss 189
                 ++  a++e d+++ l+ fl+r + a+g++++ ++++s++++p ++ +     +e++p l+edG+t+Tf+R++AlareD++++t+ehPl++++l++il++
  EGE24497.1 682 RIEIAMRELDDNKLLPLFLDRYLTAVGIDYSVQRDGSWIIHPIDASEvdvegIESLP-LDEDGMTLTFSRQQALAREDIHYMTYEHPLIQAILEMILTG 779
                 ********************************************9997766677888.79*************************************** PP

                 SSB--S-S-SSS-S--S-----B---B----S-GGG-GGGT--------B-SSSS-B--S-STTTSTT-------STTSSTTSSS-SHHHHTTTTTTTT CS
      RapA_C 190 elGnaavallknkalpagtlllElifvveaqapkalqlerfLpptpirllldekgkdlsekvsfeslnkqlkkvkkklarklvkakrkeiekllkkaek 288
                 ++Gn++v+llk++alp+g+l++E  f++e++a k+l+l+ +Lp++++r++l+e+g+dls+  ++e++ + +++++k +ar+++ka++  i++  ++a++
  EGE24497.1 780 TFGNTQVGLLKSAALPKGMLMIENQFRIEVIAAKSLNLSAYLPKQSLRIFLSERGDDLSQVATSEKILPLIDRLDKGRARQVAKARAGVIDARTQDAKR 878
                 *************************************************************************************************** PP

                 SSSHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHH--S--SSSHHHHTTTHHHHTTTTT----B----B-XXX CS
      RapA_C 289 laeeqaeelieeakaraeqelsaEleRLeaLkavNpnirdeeiealeeqreellealdqaqlrLdAiRlivv 360
                 +a  q++++ ++ak+++ + +++E+ RL +L+avNpn+rd+ei ale++++++l+ald+ +l  d+iR++v+
  EGE24497.1 879 IAGMQLDQISTQAKTAFGDYMNKEIGRLVRLQAVNPNVRDDEILALEQRKSQGLQALDSLSLVPDSIRVLVT 950
                 **********************************************************************96 PP

>> Tudor_1_RapA  RapA N-terminal Tudor like domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0     9e-25     2e-21       1      51 []       5      55 ..       5      55 .. 0.99

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 9e-25
  Tudor_1_RapA  1 FavGQRWiSetEseLGLGivvevdgrtVtilFpaageeRtYatanApLtRv 51
                  Fa+GQR++S++Es LGLG+v++vd+r+V+ilFp+++e+R+Ya+a+A L+Rv
    EGE24497.1  5 FAIGQRYLSDSESSLGLGVVIDVDDRCVHILFPQSEETRVYAKASALLSRV 55
                  9*************************************************8 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       7.3   1.6e+04       5      30 ..     395     419 ..     393     425 .. 0.68
   2 !   51.1   0.0   6.5e-17   1.5e-13       2     111 .]     468     579 ..     467     579 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7.3
                 HHHHHHHHTTTTSEEEEEESSHHHHH CS
  Helicase_C   5 allellkleeeggkilifvntidrle 30 
                 +++++l l ++g   ++f nt+d+++
  EGE24497.1 395 HIINEL-LDRHGTGRILFRNTRDSVQ 419
                 455555.4666667788999999885 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 6.5e-17
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesd.vLiatdvaerGidipkvnlVinfdlprnvt 98 
                 k++ l+ell ++ +++k+l+++++  ++e+    l+ + gik+a+++ +++  er+++ + f ++    +L+++ ++++G +++ ++ ++ fdlp n++
  EGE24497.1 468 KVAWLIELLRHKLKHKKVLLIARSGATIESlEAALRLHAGIKTAIFTEQMSLLERDQAAAYFADDAGAqILLCSEIGSEGRNFQFAQDLVLFDLPANPD 566
                 78899****99***************9977545555566***********************9555545****************************** PP

                 HHHHHHTTSSSTT CS
  Helicase_C  99 syiqriGRtgRag 111
                 ++ qriGR  R+g
  EGE24497.1 567 TLEQRIGRLDRIG 579
                 *********9986 PP

>> Tudor_RapA  RapA N-terminal Tudor like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   9.1e-16     2e-12       1      63 []      57     114 ..      57     114 .. 0.98

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 9.1e-16
  Tudor_RapA   1 FnvGDeiesqegwkltVeeveeenGlliYlgkredtgeevslpEteLdsfiqfnkPqdRLfaG 63 
                 F+vGD i++qeg+ ++V + ee  G++ Y+         +sl Et+L+++i+++kP +RL+aG
  EGE24497.1  57 FSVGDDITDQEGNLYQVARCEEISGVMRYHLACG-----KSLMETRLAANITLSKPLERLLAG 114
                 99*******************************9.....8**********************8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0     3e-13   6.8e-10      25     170 ..     167     316 ..     144     317 .. 0.79
   2 ?   -0.4   0.0      0.46     1e+03      44      81 ..     472     509 ..     469     543 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 3e-13
                 SEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG...........GEEEESSS-B--.......-SEEEEEHHHHHH CS
      ResIII  25 krglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke.......igkkvsgdkkkakekdstnkkilvttiqslda 116
                  r+l++ + G GKT+ a  ++ +    gk +++l+lvp  sl  q++ e+k+ ++ +++        + k+ + d++ +      + +++++ i+ l  
  EGE24497.1 167 PRVLLADEVGLGKTIEAGLIMHQQILTGKVNRVLVLVPD-SLQYQWMIELKRRFNLDFALfdlvrtaAIKEHNPDQNVF-----LTEQFIIAGIDLLLD 259
                 58899999******************************6.799999999998888776545565444455555555555.....566666666666666 PP

                 TH........HHHTTT-SEEEEETGGGTTS.......TTTHHHHHT---.SEEEEEESS-S CS
      ResIII 117 dseeeeeeseellrdrfdviiiDEaHrlgak......kswreilekfke.avllglTATpe 170
                 +        e++    fd++++DEaH+l+ +      +++  +++   + a +l lTATpe
  EGE24497.1 260 HH----DLYEQAYAAGFDLLVVDEAHHLHWDaeqggnDKYDLVADFAASiAGVLLLTATPE 316
                 66....8999*******************986555544****9888755588999*****8 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.46
                 HHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG. CS
      ResIII  44 lierllkkgkeekflflvprkslleqtleefkkflsea 81 
                 lie l++k k +k+l+++ + + +e ++ +++  +  +
  EGE24497.1 472 LIELLRHKLKHKKVLLIARSGATIESLEAALRLHAGIK 509
                 799999999999*****999888888777776555555 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   3.4e-13   7.7e-10      59     241 ..     170     341 ..     165     353 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.4e-13
                 EE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  59 iLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittY 157
                 +LaDe GLGKT+++  ++++q    + +          + +L++vP sl  qW+ e++r  + +       +  ++   k+++ +++++ + + +i + 
  EGE24497.1 170 LLADEVGLGKTIEAGLIMHQQIL--TGKV---------NRVLVLVPDSLQYQWMIELKRRFNLD---FALFDLVRTAAIKEHNPDQNVFLTEQFIIAGI 254
                 8************9555443333..3333.........349****************9876655...445666666677778999************** PP

                 HHHHHHT......TTS-S-S-SEEEES-GGGT--T....TSHHHHHHHH--..-S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 158 dvlsreaelqkkrsvlkqvewkrvvlDEghtlkns....tskaaeavskLs..tsnrwiltGTPiqnsledlygLlkfLreepfgekqtf 241
                 d l  ++     +++  +   + +v+DE+h l        +  +  v +++      ++lt+TP q ++e  ++ l +L +  f++ + f
  EGE24497.1 255 DLLLDHH---DLYEQAYAAGFDLLVVDEAHHLHWDaeqgGNDKYDLVADFAasIAGVLLLTATPEQLGVESHFARLRLLDPHRFDDLDDF 341
                 ****888...68999999**************98855444777777777763245679***********************999987766 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.6e-08   3.6e-05      16     170 ..     168     316 ..     157     321 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.6e-08
                 EEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.....SEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  16 dvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid.....lrvlliiggvaardqlskldngvdivvgtpgrld 109
                  vl+a e+G GKT  + + + q++++    + +++l+++P  +L  q + +lk++++ +d     l   + i++++  dq   l  + +++++  + l+
  EGE24497.1 168 RVLLADEVGLGKTIEAGLIMHQQILT---GKVNRVLVLVP-DSLQYQWMIELKRRFN-LDfalfdLVRTAAIKEHNP-DQNVFL--TEQFIIAGIDLLL 258
                 589999******************75...66669******.58**************.3433434444444554444.555555..5677777777777 PP

                 HHH...HCTSSHCTTEEEEEEETHHHHHHT...TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxx...xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 110 dll...stgklnlsqvrflVlDEadrlldq...gfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 d+    ++ +     + +lV+DEa+ l  +   g  d+++ ++   ++i         v++l+AT++
  EGE24497.1 259 DHHdlyEQAY--AAGFDLLVVDEAHHLHWDaeqGGNDKYDLVADFAASI-------AGVLLLTATPE 316
                 7665545445..999***********97553325555555544444221.......22888888876 PP

>> Asp_decarbox  Aspartate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         3   6.6e+03       1      24 [.     187     211 ..     187     219 .. 0.72
   2 ?   11.9   0.0   7.2e-05      0.16      30      61 ..     367     398 ..     346     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3
                   XEEEEEEEEEEEEEXXE.EETTXXX CS
  Asp_decarbox   1 mlrtllksKihratvte.aelnYeG 24 
                   m+ ++l++K+ r+ v    +l+Y+ 
    EGE24497.1 187 MHQQILTGKVNRVLVLVpDSLQYQW 211
                   88999*******9885414577765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 7.2e-05
                   HHHHHHCT--TTBEEEEEETTT--EEEEEEEE CS
  Asp_decarbox  30 eelleaagileyekvqvvnvnngeRletYvik 61 
                   ++++  a++l +e+++ +++n +eRl+t +i+
    EGE24497.1 367 KQICAVANLLGFEEIELADINANERLRTHIIN 398
                   578889************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6827.58
//
Query:       EGE24498.1  [L=32]
Description: hypothetical protein EA1_07282 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      128  (0.00713927); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 254.76
//
Query:       EGE24499.1  [L=318]
Description: D-isomer specific 2-hydroxyacid dehydrogenase catalytic domain protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-51  174.2   0.0    2.2e-51  173.8   0.0    1.2  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
    2.1e-21   76.0   0.0    2.6e-21   75.7   0.0    1.0  1  2-Hacid_dh    D-isomer specific 2-hydroxyacid dehydrogenase, 
  ------ inclusion threshold ------
      0.018   15.1   0.2      0.045   13.8   0.0    1.7  2  DUF918        Nucleopolyhedrovirus protein of unknown functio


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   0.0   3.6e-55   2.2e-51       1     178 []     108     288 ..     108     288 .. 0.92

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 3.6e-55
                   HHHHHHHHTTHHHHHHHHHTTCCHTTC.....CGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH- CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregewksek.....allgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaes 92 
                   l+++la++r  ++++++  +g+w+++      + +  +l+g+t+GiiG+G+IG++v +++kafgm+v++ +++ k+ +       e++++e++l++s
    EGE24499.1 108 LMMMLAIMRGAKYYHQRATDGTWQADGrfcllNEPLFDLYGQTLGIIGAGNIGRRVGELAKAFGMHVLYAEHQGKTPR-----SSEYTEFETVLNSS 199
                   68*********************55553333344555***********************************988444.....45899********* PP

                   SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHH...HHSTTEEE-SS-T CS
  2-Hacid_dh_C  93 DivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspl...lelpnviltPHia 178
                    ++slh+plt++t+hlin ++l km ++ ++iN+aRGg+v  +++++aL + +i g+a Dvfe+ep+ +++pl   +++p+v++tPH a
    EGE24499.1 200 NVISLHCPLTDATKHLINTDTLTKMHQKPLIINVARGGVVCGADIVDALINDHILGYASDVFESEPFAKNDPLlgiADHPRVLFTPHNA 288
                   *************************************************************************88889*********87 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   4.3e-25   2.6e-21      26     131 ..      30     317 ..       9     318 .] 0.96

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 4.3e-25
                 S..CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH.................... CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
  2-Hacid_dh  26 d..ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt.................... 102
                 +  ++++e +++++ da+++i+++   +t+++l+alpkL++i++ ++G+DnvD +a++ +Gi++ nv gys +sv E+t                    
  EGE24499.1  30 SqtPQDDEIIIQRCCDAQIVITNKVV-ITRDILKALPKLRLIQLTATGMDNVDKQACQDLGITLKNVAGYSVNSVPEHTlmmmlaimrgakyyhqratd 127
                 33478888999**************9.************************************************************************ PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  EGE24499.1 128 gtwqadgrfcllneplfdlygqtlgiigagnigrrvgelakafgmhvlyaehqgktprsseytefetvlnssnvislhcpltdatkhlintdtltkmhq 226
                 *************************************************************************************************** PP

                 ..............................................................T-BHHHHHHHHHHHHHHHHHHHTTCCGTT CS
                 ..............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ..............................................................aaTeeaqeniaeeaaenlvaflkgespan 131
                                                                               + +  aqe++ e+ a+++++f++ +s+ n
  EGE24499.1 227 kpliinvarggvvcgadivdalindhilgyasdvfesepfakndpllgiadhprvlftphnaWGSLAAQEKLWEILANQITDFINSHSTHN 317
                 *************************************************************************************988876 PP

>> DUF918  Nucleopolyhedrovirus protein of unknown function (DUF918)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.5e-06     0.045      58     106 ..       7      55 ..       2      63 .. 0.87
   2 ?   -3.5   0.0       1.5   9.1e+03      67      82 ..     191     206 ..     188     219 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.5e-06
      DUF918  58 karlivkqmefeqppnfvnfisfnatdndnsmiidlcsdariivakklt 106
                  a    kq  +  p  + ++ ++  t +d+ +ii+ c da+i++++k+ 
  EGE24499.1   7 DAGTFSKQACLPTPKGVTDYQAYSQTPQDDEIIIQRCCDAQIVITNKVV 55 
                 566677899999999999**************************99975 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
      DUF918  67 efeqppnfvnfisfna 82 
                 efe   n  n+is+ +
  EGE24499.1 191 EFETVLNSSNVISLHC 206
                 6666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2475.94
//
Query:       EGE24500.1  [L=348]
Description: geranyltranstransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-56  190.7   1.6    2.9e-56  190.4   1.6    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.4   1.6   1.6e-60   2.9e-56       3     235 ..      76     319 ..      74     330 .. 0.90

  Alignments for each domain:
  == domain 1  score: 190.4 bits;  conditional E-value: 1.6e-60
                      HHHHHHHHHHHSSS--HHHHHHHHHHHHHSCG.......HHHHHHHHHHHHHHHHHHHHHHHHHHH..HTT-SEETTEE-HHHCTCHHHHHHHH CS
  polyprenyl_synt   3 lleealeylveagGKrlRpllvllaaealkee.......eeelekaavlawivellhaasLvhDDi..mDdsetRRGqpcahrlvGnklAindg 87 
                       l++a++y +++gGKr+Rpllvl ++  l +         ++++ + +++ +vel+h++sL+hDD+  mDd+ +RRGqp++h ++G+++A+++g
       EGE24500.1  76 PLNKACRYAMSNGGKRVRPLLVLSTFLTLIKTghqtddlTKKIQMLFRAMMAVELIHSYSLIHDDLpcMDDDALRRGQPTCHIVYGEDVALLAG 169
                      5899*********************9999833445666647999************************************************** PP

                      HHHHHHHHHHHHHHH.....STT..HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHH CS
  polyprenyl_synt  88 dfllarafellaklf.....eks..lellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeele 174
                      d+l+++afe+l ++      ++    +l +l+s  + ++v Gq+ld++ e ++ ls    ++ ++i++ KT++l++++v ++a++a++++++l 
       EGE24500.1 170 DALQSIAFEVLFECYdknsaDDAiaYKLAKLLSCRARRMVSGQMLDIKGE-NQMLS---QDKLEAIHRDKTGALIEAAVMMGAICADVQTDTLG 259
                      ************9998877533366899*******************666.57777...9****************************99**** PP

                      HHHHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHH CS
  polyprenyl_synt 175 alkdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvl 235
                       lk++++ +GlaFQ+qDD+lD+++d+ +lgKpag+D + +k t++ l  ++ a++  + +l
       EGE24500.1 260 YLKHYARAIGLAFQVQDDVLDITADTITLGKPAGSDEKLEKSTYVKLLGVKGAQEYAN-QL 319
                      ***********************************************99995554433.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2841.58
//
Query:       EGE24501.1  [L=410]
Description: A/G-specific adenine glycosylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-16   58.5   0.0    1.3e-15   57.8   0.0    1.3  1  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
    8.3e-12   45.1   1.0    1.7e-11   44.1   0.1    2.1  2  NUDIX_4        NUDIX domain
    4.3e-06   26.3   0.0    9.2e-06   25.3   0.0    1.6  1  HHH            Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.014   16.0   0.0       0.15   12.7   0.0    2.2  2  HHH_5          Helix-hairpin-helix domain
      0.021   15.2   6.2      0.044   14.1   6.2    1.6  1  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
      0.034   14.3   0.1       0.12   12.6   0.0    1.9  2  E1_4HB         Ubiquitin-activating enzyme E1 four-helix bund


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   4.3e-19   1.3e-15       1     105 [.      63     197 ..      63     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 4.3e-19
                 HHHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
     HhH-GPD   1 vsailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv................................. 66 
                 vs+i+ qqt+++++ + +e + +r  f t+++la ad +++++ + +lG+y  +a+++++ A++++                                 
  EGE24501.1  63 VSEIMLQQTQVVTVLKFFEPFLAR--FATVQELAVADWQEVASFWAGLGYY-ARARNLHAGAQQVAdfidthgrfpetvnewqavkgvgrstagaivam 158
                 89**********************..67***********************.*********************************************** PP

                 S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 gkpdvlivvDvhvrrilkrlrsikekktkkkvekkleel 105
                 g ++ +++ D +v+r+l r+r +  + tk+ + k+l+e+
  EGE24501.1 159 GVKKFGVICDGNVKRVLARHREVCGDITKSATDKRLWEI 197
                 666778889***************************986 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.4   7.2e+03      61      73 ..      28      41 ..      11      76 .. 0.51
   2 !   44.1   0.1   5.8e-15   1.7e-11      10     109 ..     274     404 ..     264     405 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.4
                EEETTEEEEEE.EE CS
     NUDIX_4 61 HvftHfrltlt.vy 73
                H+f  + lt   ++
  EGE24501.1 28 HSFAKRLLTWFeLH 41
                55555544433332 PP

  == domain 2  score: 44.1 bits;  conditional E-value: 5.8e-15
                 EEEEEE--TTSSSTT-EE-S........EEE-TTS-HH.....HHHH.........HHHHS-EEE..............EEEEEEEEEEETTEEEEEEE CS
     NUDIX_4  10 rvllekRpekgllggLwefP........ggeeegeele.....eala.........reelgieve..............elepgtvkHvftHfrltltv 72 
                  ++l++  + g++ gLw++P        + +      +     +a+          +       +              +++    +H++tH++++l+ 
  EGE24501.1 274 TLWLHRQNGGGIWDGLWSLPifmlplddNQKL-----DnntlsDAIFkawqsdekvH-------DllhsqlieilpiptQTSTAYLRHTLTHVHWHLYG 360
                 679*****************764443321122.....12222233322222222211.......01222233333332222234466***********8 PP

                 EEE.....EEE.S..---..........EEEEEEGGGGGGS---CCCHCCHH CS
     NUDIX_4  73 ylv.....rveegeeapa..........elrwvtpeeleeyalptavrklle 109
                 + +     +++      +          ++ w  ++ + +++lp+a++kll+
  EGE24501.1 361 MSIclnnsQFN------QinqtltalgiDYLW--KDTPYNLPLPAAMHKLLT 404
                 88845555222......234556688778888..8999************96 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.1e-09   9.2e-06       4      29 ..     132     157 ..     129     158 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.1e-09
                 HHHTSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   4 glipasreeLlalPGVGpktAeaIls 29 
                 g +p ++ e++a++GVG++tA+aI +
  EGE24501.1 132 GRFPETVNEWQAVKGVGRSTAGAIVA 157
                 77999*******************75 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.39   1.2e+03      23      39 ..      87     103 ..      83     110 .. 0.81
   2 ?   12.7   0.0     5e-05      0.15       5      38 ..     142     175 ..     138     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.39
                 --SHHHHHHS-HHHHHT CS
       HHH_5  23 iesvedlaaadveeLak 39 
                 + +v++la ad +e+a+
  EGE24501.1  87 FATVQELAVADWQEVAS 103
                 779*********99987 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5e-05
                 HTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHH CS
       HHH_5   5 lsvsGiGpktAlallsaGiesvedlaaadveeLa 38 
                 + v+G+G++tA a++  G++ +  +++ +v+++ 
  EGE24501.1 142 QAVKGVGRSTAGAIVAMGVKKFGVICDGNVKRVL 175
                 679***************************9854 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   6.2   1.5e-05     0.044       1      17 []     222     238 ..     222     238 .. 0.99

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaDlC 17 
                    CT   PkC  CP+ D C
     EGE24501.1 222 CTRTQPKCHLCPVTDDC 238
                    ***************** PP

>> E1_4HB  Ubiquitin-activating enzyme E1 four-helix bundle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.7   8.2e+03      31      56 ..      25      52 ..      20      61 .. 0.63
   2 ?   12.6   0.0   3.9e-05      0.12      28      58 ..     112     142 ..     105     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.7
                HHHHHHHHHHHHHHHCTT-..---TT-H CS
      E1_4HB 31 eqlHlafqALhaFeeehgr..lPrplne 56
                eq H   + L  + e hgr  lP  ++ 
  EGE24501.1 25 EQRHSFAKRLLTWFELHGRhgLPWQYHH 52
                5666666666667777777557766655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.9e-05
                 TCHHHHHHHHHHHHHHHHCTT----TT-HHH CS
      E1_4HB  28 drpeqlHlafqALhaFeeehgrlPrplneed 58 
                  r++ lH++ q +  F ++hgr+P+  ne  
  EGE24501.1 112 ARARNLHAGAQQVADFIDTHGRFPETVNEWQ 142
                 57889********************999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3274.59
//
Query:       EGE24502.1  [L=349]
Description: DNA/RNA non-specific endonuclease [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-37  129.2   0.0    2.9e-37  128.6   0.0    1.2  1  Endonuclease_NS  DNA/RNA non-specific endonuclease
    0.00061   19.9   0.1       0.11   12.6   0.0    2.5  2  Endonuclea_NS_2  DNA/RNA non-specific endonuclease
  ------ inclusion threshold ------
      0.056   12.2   0.0       0.11   11.2   0.0    1.5  1  Salt_tol_Pase    Glucosylglycerol-phosphate phosphatase (Salt
       0.15   11.6   0.5       0.45   10.1   0.5    1.7  1  UPF0220          Uncharacterised protein family (UPF0220)


Domain annotation for each model (and alignments):
>> Endonuclease_NS  DNA/RNA non-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.0   6.6e-41   2.9e-37      12     224 ..     104     300 ..      94     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 6.6e-41
                      TSTTSEEEE-SSEEEEEETTTTEEEEEEEEESCGGGSS-TT--GG---B--TTS-CCSG---HHHCTTS.SSEEEESS-GGG--SSHHHHHHTT CS
  Endonuclease_NS  12 tsgddkvlfykgfsvsynkerriplwvaenldgasvnasaaerrgpsfkadpripqlsfrtqysdyagskgldRGHLaaaadfkfsteanaatf 105
                       s+  + l+ +gf++ +++  r+plw+a +l++a + ++++ +r +sf+a+ r+p+   r++ sdy++s g+dRGH+a++ d+  +t+++ ++f
       EGE24502.1 104 LSTMARALCFEGFATLHSGIARTPLWSASHLTQARISQARTLARVDSFHAESRLPAD-ERAELSDYRRS-GYDRGHIAPNGDMA-TTGSQYDSF 194
                      5555667899*****************************9888**************.8999*******.9*************.9999***** PP

                      BGGGEEEE-HHHHCTHHHHHHHHHHHHHCTTS.EEEEEEEEES-ECC-EEEETT.TTEE--SEEEEEEEEECCTTTCEECCEEEEEESSSS-TT CS
  Endonuclease_NS 106 nytNivPQvagfNqgnWlrlEnlvrklvrkydrklyvvtGpvfvprllyeligk.nkvavPthfwkvilsedaddkgtlnaaafllpnepiade 198
                      +++Ni+PQ+ + N++ W+++E+++r+l+ +y+ ++yvvtG+ f +++  e     ++v vP+hf+k+++ ++       +aa++ ++ ++   +
       EGE24502.1 195 SLANIAPQNGEHNRHLWRHIETQTRQLAIEYG-EVYVVTGVAFLGKTS-ER--IgGRVLVPSHFFKAVYIPKL------SAAGVYFSSNDS--S 276
                      *****************************999.**************9.44..357***************87......678888777755..4 PP

                      S-GGGGB--HHHHHHHHT--TTTTS- CS
  Endonuclease_NS 199 rpltayqvpvdeleeltGldffcnva 224
                       +++ +  ++del +ltG++    ++
       EGE24502.1 277 ENYQII--SLDELARLTGINAMPSLP 300
                      444444..77********99876665 PP

>> Endonuclea_NS_2  DNA/RNA non-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.5e-05      0.11      45     101 ..     164     224 ..     130     239 .. 0.66
   2 !    4.6   0.0    0.0071        32       7      44 ..     276     314 ..     271     328 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
  Endonuclea_NS_2  45 kikkkknrgklynggHLi..gs.qfgGsnek....kNlvtgtrqlNrgemlklEnelakylkls 101
                      +++++  r   y++gH++  g+ + +Gs  +     N+ +++ + Nr  ++++E++ ++ l+ +
       EGE24502.1 164 ELSDY--RRSGYDRGHIApnGDmATTGSQYDsfslANIAPQNGEHNRHLWRHIETQTRQ-LAIE 224
                      44444..45679999998444424578764222258**********************9.4443 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0071
  Endonuclea_NS_2   7 vngk.lyklDelgRvtkvnallnlkstekrn.klqqrkpg 44 
                       +++ + +lDel R+t +na+ +l +t+ r+  ++   p+
       EGE24502.1 276 SENYqIISLDELARLTGINAMPSL-PTQIRQtAYDLPRPS 314
                      44553569************9888.554444044444444 PP

>> Salt_tol_Pase  Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.5e-05      0.11      70     145 ..     256     329 ..     216     343 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.5e-05
  Salt_tol_Pase  70 eglyLpGlaagGvqwqdrfgkvshpGvsdaelaflaavPelikelleeflkkllkelseeeieklieasvldnkvs 145
                    +++y+p l+a+Gv +  + ++ +++ +s +ela l+ + ++   +l ++++++++ l + + +k  e+ vld + s
     EGE24502.1 256 KAVYIPKLSAAGVYFSSNDSSENYQIISLDELARLTGINAM--PSLPTQIRQTAYDLPRPSSNKNPEQKVLDHQPS 329
                    689********************************999764..689999999999999999999999999998876 PP

>> UPF0220  Uncharacterised protein family (UPF0220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.5    0.0001      0.45      37     115 ..      12     124 ..       9     128 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0001
     UPF0220  37 fwlliDaaivskkanasdvhvtfvd.wipgicstlgmlivnsieksrlsgds.................................lgqsgssvawkarv 101
                  wll+ ++   ++a a d  ++ +      i   +   iv s +++rl +d                                  +g++g+++   ar 
  EGE24502.1  12 AWLLVIMMSATSTAHANDSAINSAEqLTTHITTAIKQTIVKSTDNDRLYQDPnqqadgeivgvrsfddsfsdcqnqfanrqaptlIGKQGKRLSTMARA 110
                 4555544444444557777777665155779999****************9966666666555555555555555554444444444444999999*** PP

     UPF0220 102 vLflGfallaggla 115
                 + f Gfa l +g+a
  EGE24502.1 111 LCFEGFATLHSGIA 124
                 *********99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2547.06
//
Query:       EGE24503.1  [L=82]
Description: hypothetical protein EA1_07307 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 626.54
//
Query:       EGE24504.1  [L=121]
Description: hypothetical protein EA1_07312 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00069   20.2   0.7     0.0012   19.5   0.3    1.6  2  GH43_C    C-terminal lipocalin-like domain
     0.0024   18.5   2.7     0.0057   17.3   2.7    1.6  1  DUF2147   Uncharacterized protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
       0.16   11.8   0.8       0.27   11.0   0.8    1.4  1  DUF348    G5-linked-Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> GH43_C  C-terminal lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.3     2e-07    0.0012      46      99 ..      25      80 ..       8      84 .. 0.78
   2 ?   -0.3   0.0      0.28   1.7e+03      49      68 ..      81     106 ..      74     117 .. 0.45

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2e-07
      GH43_C 46 assgtWklked.knqitltl..dgetykgvfllllkdwdeekkketltftglsnngv 99
                a  g+Wk++e+ ++++ +t+  +g+ y+gv++  l d+ ++k++ t+++t +s++g+
  EGE24504.1 25 AIVGKWKMSEKgEEKAIITIsqAGNGYQGVMTQGLTDK-AKKREGTIVLTNISSQGE 80
                5679***998865677788855688*******555555.56778********88775 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.28
      GH43_C  49 gtWklked......knqitltldget 68 
                 g++k k++      k ++++t++g+t
  EGE24504.1  81 GKYKGKGAhptlpiKGTVNITVNGNT 106
                 44444333333333333444444442 PP

>> DUF2147  Uncharacterized protein conserved in bacteria (DUF2147)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   2.7   9.5e-07    0.0057       1      99 [.      28     113 ..      28     120 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.5e-07
     DUF2147   1 GlWkted.gkaksvveiykcgkklcGkivklkekakkdaknpdgalrnrpllGleilkglkkdgegewegGkiydpesGktYkckitlkdgnkLevrGy 98 
                 G+Wk ++ g++k+++ i++ g+ + G +++ +          d   + ++  G+ +l++++++geg+++ Gk   p    + +++it++ gn+++++  
  EGE24504.1  28 GKWKMSEkGEEKAIITISQAGNGYQGVMTQGL---------TD---KAKKREGTIVLTNISSQGEGKYK-GKGAHPTLPIKGTVNITVN-GNTITIKSI 112
                 89*99998999******************988.........22...455668999**********99*9.9999998888888888886.677777765 PP

     DUF2147  99 i 99 
                  
  EGE24504.1 113 A 113
                 5 PP

>> DUF348  G5-linked-Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   4.6e-05      0.27       1      18 [.      98     115 ..      98     115 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.6e-05
                 EEEEETTEEEEE----SS CS
      DUF348   1 VtltvDGktvtvrTaadT 18 
                 V++tv+G t+t+++ a+T
  EGE24504.1  98 VNITVNGNTITIKSIAGT 115
                 89************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 972.99
//
Query:       EGE24505.1  [L=112]
Description: nitrogen regulatory protein P-II [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-44  149.7   1.6    3.6e-44  149.5   1.6    1.0  1  P-II       Nitrogen regulatory protein P-II
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.018   15.1   0.0    1.1  1  DUF3240    Protein of unknown function (DUF3240)
      0.069   13.4   0.1       0.14   12.4   0.1    1.5  1  CdAMP_rec  Cyclic-di-AMP receptor
       0.17   11.9   0.0       0.29   11.2   0.0    1.3  1  Cdc6_C     CDC6, C terminal winged helix domain


Domain annotation for each model (and alignments):
>> P-II  Nitrogen regulatory protein P-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   1.6     8e-48   3.6e-44       1     102 []       4     105 ..       4     105 .. 0.99

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 8e-48
                 EEEEEEGGGHHHHHHHHHHTTGGCEEEEEEEEEESTCCEEEECTTEEEEEEEEEEEEEEEEEEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEESEEEET CS
        P-II   1 ieaiirpekleevkeaLekagvkgltvtevkGrGkqkghtelyrgaeyevellpkvkleivvsdedvekvveaiikaaktgeiGDGkiFvlpveeviri 99 
                 i aii+p+kl++v+eaL+++gv+g+tvtevkG+G+qkghte+yrgaey v++lpk+k+ei+++de v++++e iik+a+tg+iGDGkiFv+p+e+viri
  EGE24505.1   4 ISAIIKPFKLDDVREALSEIGVNGITVTEVKGFGRQKGHTEMYRGAEYVVDFLPKIKIEIACRDEMVDSIIESIIKVANTGKIGDGKIFVSPLERVIRI 102
                 89************************************************************************************************* PP

                 TTT CS
        P-II 100 rtg 102
                 rtg
  EGE24505.1 103 RTG 105
                 **8 PP

>> DUF3240  Protein of unknown function (DUF3240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   4.1e-06     0.018      17      83 ..      14      81 ..       2      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.1e-06
     DUF3240 17 ddlvDlLlelpdllsGFtlldakghsrevslati...aEkvrGradkvvveivleeaalerllaeLrkav 83
                dd+  +L+e    + G t+ ++kg++r+  ++++   aE v    +k+++ei++  + +  +++ + k+ 
  EGE24505.1 14 DDVREALSEI--GVNGITVTEVKGFGRQKGHTEMyrgAEYVVDFLPKIKIEIACRDEMVDSIIESIIKVA 81
                6777777777..689************987776533389************************9987765 PP

>> CdAMP_rec  Cyclic-di-AMP receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     3e-05      0.14       1     107 [.       1     100 [.       1     102 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
                 EEEEEEEEEHHHHHHHHHHHHHTT-EEEEEEEEETTT-S.EEEEEEEEEEGGGHHHHHHHHHHC---EEEE-----TTTTTTTT--SS--EEEEESEEE CS
   CdAMP_rec   1 mklviaivqdedanelvdalteknfkatklattGGflke.GnttlliGvedekvdevlsiikekcktreqlvasssplgesadsyvpkpvevevGGatv 98 
                 mkl+ ai++    +++ +al+e + +   ++   Gf ++ G t +  G e   v + l  ik +   r+++v s+       +s ++ +   ++G   +
  EGE24505.1   1 MKLISAIIKPFKLDDVREALSEIGVNGITVTEVKGFGRQkGHTEMYRGAE--YVVDFLPKIKIEIACRDEMVDSII------ESIIKVANTGKIGDGKI 91 
                 9***********************************87527777777764..577788888888899999998764......45666666777777777 PP

                 EEEE-SEEE CS
   CdAMP_rec  99 fvldvekfv 107
                 fv ++e+ +
  EGE24505.1  92 FVSPLERVI 100
                 777777666 PP

>> Cdc6_C  CDC6, C terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.4e-05      0.29      34      72 ..       8      46 ..       5      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.4e-05
                -----HHHHHHHHHHHHHTTSEEEEEEE-CC.C-EEEEE CS
      Cdc6_C 34 vdpltqrevsdllseLemlgileleksskGrregrtrki 72
                ++p +   v++ lse    gi  +e+++ Gr +g t  +
  EGE24505.1  8 IKPFKLDDVREALSEIGVNGITVTEVKGFGRQKGHTEMY 46
                57888899***********************99999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 843.68
//
Query:       EGE24506.1  [L=466]
Description: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-26   92.9   1.2    3.3e-26   92.5   1.2    1.2  1  Mur_ligase_M   Mur ligase middle domain
    5.1e-06   26.7   0.0    3.7e-05   23.9   0.0    2.4  2  Mur_ligase_C   Mur ligase family, glutamate ligase domain
    3.2e-05   24.2   0.6    0.00048   20.4   0.0    3.0  3  Mur_ligase     Mur ligase family, catalytic domain
    0.00025   20.7   1.2     0.0016   18.0   1.3    2.1  1  Peripla_BP_4   Periplasmic binding protein domain
    0.00057   19.2   0.8      0.026   13.8   0.0    2.3  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0018   18.5   1.1      0.087   13.1   0.0    3.2  4  TrkA_N         TrkA-N domain
  ------ inclusion threshold ------
      0.011   15.7   0.1        1.8    8.4   0.0    2.4  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.011   15.1   0.0      0.076   12.4   0.0    2.1  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      0.017   15.7   0.0      0.081   13.5   0.0    2.1  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.025   13.9   0.1        1.5    8.1   0.0    2.3  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.036   14.2   0.1       0.26   11.4   0.0    2.4  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
      0.081   13.2   0.0       0.24   11.7   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.09   13.2   0.0        1.9    9.0   0.0    2.6  1  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   1.2   2.4e-29   3.3e-26       1     191 [.     115     295 ..     115     296 .. 0.83

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 2.4e-29
                   EESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TSTTHHHHSSHHHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglgekrlegllkpdvavitnispdHldfhgtlenyaea 97 
                   +TG+n K+T+t+l+ ++ ++ag ++g+ g+    ig+p++ +   + +++++vlE+ss +l+  ++++ l  + a+i+n+s dHld+h+ + +y++ 
    EGE24506.1 115 ITGSNAKSTVTTLVGEMAKHAGMIVGVGGN----IGTPALELLTIQ-NMDLVVLELSSFQLE--HISN-LAAQGATILNLSADHLDRHDGMVDYLAQ 203
                   8****************************9....999987655555.9***********555..5555.5669************************ PP

                   HHHHHHTSETTCEEEEETTSC....CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEE.EEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M  98 Kaelferlkeegiavinaddpy.akelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggele.ieipllGkhnvyNalaaiaa 191
                   K ++fe+++   +a+i  dd   ak++   l+    ++  + +++   + ++++ + +++g+ ++l + k++ l   ++++ Gkhn+ Nal a+a+
    EGE24506.1 204 KLRIFENCQ---TAIICQDDANlAKQCLTTLTSVAPNHTIITTNSLL-SHQTADFYLFDDGDGMALYHQKNKLLPiHQLKIKGKHNLLNALSALAL 295
                   ******999...88888888753566666666655555555555544.5678899999999999999778888886678***************97 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         2   2.8e+03      40      76 ..     109     139 ..      98     147 .. 0.67
   2 !   23.9   0.0   2.7e-08   3.7e-05       2      81 ..     317     392 ..     316     398 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2
                   SSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEE CS
  Mur_ligase_C  40 dkrlilvfgpggelgertrtfhdefgrlasaladslv 76 
                   +  +i++ g+ +     t t   ++g++a++ a ++v
    EGE24506.1 109 NTPIIAITGSNAK---STVT--TLVGEMAKH-AGMIV 139
                   5678888888555...4544..888888886.55544 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 2.7e-08
                   TTSSEEEEETTTEEEEEE.T--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidD.yahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdy 81 
                   ++R e+++  dg  +++D +++n++s+ aa+++l +++  + l l++g g     ++++f ++ +++ +  +ds++++g++
    EGE24506.1 317 PHRCEYIDDIDGKAYFNDsKGTNIGSTIAAIDGLGTVYGISSLALILG-GLG---KGQDFSELSAYVMQW-VDSVYLIGQD 392
                   8***********************************************.788...899998888888886.8887776664 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.5e-07   0.00048       3      75 ..       6      90 ..       4     100 .. 0.86
   2 ?   -0.6   0.0       1.2   1.7e+03      31      49 ..     172     190 ..     170     206 .. 0.85
   3 ?   -1.5   0.0       2.4   3.3e+03      11      42 ..     355     395 ..     354     411 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.5e-07
                EEESTTSCCHHHHHHHHHHTTSEEEEEESSHC.....HHHTT-EEEES-HGGGG.......EE-T.S-TTCHHHHHHHHTTEEEEE CS
  Mur_ligase  3 hfigidgrgmsagalflalkGykvdGsdfies.....lialGaaavvghdaani.......vvss.iskdnpeleaakepgipves 75
                  +g++++g+sa+  fl + G+kv+  d +++      +  G+ +++g+ ++ +       ++s  i+++ p ++aak++gipv+s
  EGE24506.1  6 AVVGLGSSGLSAVN-FLVNHGHKVSIIDGNPNptladKLPTGVHCHFGSLDSELlssadqiIISPgINPRTPSIVAAKAQGIPVIS 90
                679********997.888****************7666667********666666666666***********************75 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
                 SSHCHHHTT-EEEES-HGG CS
  Mur_ligase  31 fieslialGaaavvghdaa 49 
                 +i +l a+Ga+++  ++++
  EGE24506.1 172 HISNLAAQGATILNLSADH 190
                 57889******99877665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.4
                 CHHHHHHHHHHTTSEEEEEESSHC.........HHHTT-EE CS
  Mur_ligase  11 gmsagalflalkGykvdGsdfies.........lialGaaa 42 
                 g+s++al+l   G+  d s++ ++         li + a++
  EGE24506.1 355 GISSLALILGGLGKGQDFSELSAYvmqwvdsvyLIGQDAPI 395
                 78999999988888777666666665555555555555555 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.3   1.2e-06    0.0016      50     190 ..      56     243 ..      53     253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.2e-06
                   HHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEE.................ESTT..GCTTT-CEEEEEC-HHHHHHHHH............... CS
  Peripla_BP_4  50 daiakgvdgiivapvdstalapalkkakaaGIpVva.................fdsd..dapsgerlayvgfdneaaGelqa............... 112
                   + + + +d ii++p      +p + +aka+GIpV++                  +++  ++ +++  + v++   ++++ ++               
    EGE24506.1  56 SELLSSADQIIISPGIN-PRTPSIVAAKAQGIPVISdvqlfidtlkardltqaTNTPiiAITGSNAKSTVTTLVGEMAKHAGmivgvggnigtpale 151
                   56667789999999885.456789999*********99999666666666666555565455555555555555555555558888*********** PP

                   ...................HHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECC...EEESTTTCHHHHHHHHHHHHH..TTTEC CS
  Peripla_BP_4 113 ...................eylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikiva...evaganwdaekaqqaleallt..anpld 185
                                      e + +   ++ ++++ l     ++++ +r +g+ ++l++  ++ i +   +++ +++da+ a+q+l++l +  +n   
    EGE24506.1 152 lltiqnmdlvvlelssfqlEHISNLAAQG-ATILNL-----SADHLDRHDGMVDYLAQ--KLRIFEncqTAIICQDDANLAKQCLTTLTSvaPN--H 238
                   *******9999977777777777777777.777755.....89999************..88888777655566**************997644..3 PP

                   EEEES CS
  Peripla_BP_4 186 gilaa 190
                    i+++
    EGE24506.1 239 TIITT 243
                   45555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.9e-05     0.026       2      36 ..       4      37 ..       3      58 .. 0.82
   2 ?    3.7   0.1     0.022        30      99     143 ..      61     122 ..      48     177 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtcl 36
                 +++v+G G  Gl+a  +l ++g+kv ++ +++  +
   EGE24506.1  4 KYAVVGLGSSGLSAVNFLVNHGHKVSII-DGNPNP 37
                 899*************************.554333 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.022
                  EESEEEE---EEE-BCTCTTC........TTBEECCSECHHHHHHCCSS-T..........S CS
                  xxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxx..........x RF
  Pyr_redox_2  99 aydklvlAtGssprdlgipGv.......aenvgklvrtldsaealklkllp..........k 143
                   +d++++ +G +pr++ i ++         +v+ +++tl+  +  +  ++p           
   EGE24506.1  61 SADQIIISPGINPRTPSIVAAkaqgipvISDVQLFIDTLKARDLTQATNTPiiaitgsnakS 122
                  57999******999998887733333442222233344444444444444455555555540 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.3e-05     0.087       1      33 [.       5      37 ..       5      81 .. 0.81
   2 ?   -0.7   0.0       1.2   1.7e+03      37      81 ..      81     127 ..      51     135 .. 0.72
   3 ?    2.3   0.0      0.14   1.9e+02       2      49 ..     137     188 ..     136     193 .. 0.75
   4 ?   -3.5   0.1       8.8   1.2e+04      63      93 ..     211     241 ..     206     248 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.3e-05
                EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeer 33
                ++++GlG  G s ++ L + g+ +v++id +++ 
  EGE24506.1  5 YAVVGLGSSGLSAVNFLVNhGH-KVSIIDGNPNP 37
                68*****************555.7******9965 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
                 HHHTTSEEEES-TTSHHHHHHTTGGGES..EEEE-SSSHHHHHHHHH CS
      TrkA_N  37 lreeglevvvgdatdeevLeeagiekad..aviaatgddeanilavl 81 
                 ++++g++v+       ++L++ ++ +a    +ia tg+++++++++l
  EGE24506.1  81 AKAQGIPVISDVQLFIDTLKARDLTQATntPIIAITGSNAKSTVTTL 127
                 55666666666666667777777777765557888888888877776 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.14
                 EEES.-SHHHHHHHHHHHHTTEEEEEEESSH...HHHHHHHHTTSEEEES-T CS
      TrkA_N   2 iiiG.lGrvGrslaeeLseggkdvvvidkde...erveelreeglevvvgda 49 
                 +i+G  G++G+  +e L+ +++d vv + +    e++ +l+++g+++++ +a
  EGE24506.1 137 MIVGvGGNIGTPALELLTIQNMDLVVLELSSfqlEHISNLAAQGATILNLSA 188
                 57775689*********998889*****998444556666677776666655 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 8.8
                 ESEEEE-SSSHHHHHHHHHHHHHHTSSSEEE CS
      TrkA_N  63 adaviaatgddeanilavllakelnpkkkii 93 
                 +++ i++ +d      ++ ++ +  p+ +ii
  EGE24506.1 211 CQTAIICQDDANLAKQCLTTLTSVAPNHTII 241
                 5555555544444444444445555655555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0013       1.8       3      33 ..       6      36 ..       4      47 .. 0.91
   2 ?    4.8   0.0     0.016        23      86     114 ..     217     245 ..     137     251 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
                EEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdisee 33
                av+G G  G +  + ++++g++V ++d +++
  EGE24506.1  6 AVVGLGSSGLSAVNFLVNHGHKVSIIDGNPN 36
                9**************************8765 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.016
                 S-SSHHHHHHHHHHHHCCS-TTSEEEE-- CS
     3HCDH_N  86 vvEnlelKrkvfaelekiakpdailasnT 114
                   ++ +l ++ +++l ++a++++i+++n+
  EGE24506.1 217 CQDDANLAKQCLTTLTSVAPNHTIITTNS 245
                 45788899999****************96 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.5e-05     0.076      37     112 ..       3      82 ..       1      85 [. 0.85
   2 ?   -0.2   0.0      0.39   5.3e+02      35      68 ..     132     166 ..     115     189 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.5e-05
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH.CHHHHTC..EECSHH.HHHHH-SEEEE-S--STTTTTSBSHH CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrskkkee.eeeelgv..elvsle.ellaesDivslhlpltpetrhlinae 112
                   k+ +++GlG+ G ++ + l   g kv ++d +++++  ++  +gv  ++ sl+ ell+++D +++   ++p t  ++ a+
    EGE24506.1   3 KKYAVVGLGSSGLSAVNFLVNHGHKVSIIDGNPNPTLaDKLPTGVhcHFGSLDsELLSSADQIIISPGINPRTPSIVAAK 82 
                   7899*****************************9988533334442266799768******************9999876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.39
                   TTSEEEEES-.SHHHHHHHHHHHHTT-EEEEESSS CS
  2-Hacid_dh_C  35 sgktvGiiGl.GrIGqavakrlkafgmkviaydrs 68 
                   ++    i+G+ G+IG+ + ++l+  +m++++ + s
    EGE24506.1 132 AKHAGMIVGVgGNIGTPALELLTIQNMDLVVLELS 166
                   4555568888359******9999988888877655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.9e-05     0.081       2      35 ..       5      38 ..       4      48 .. 0.90
   2 ?   -1.5   0.0       2.8   3.9e+03      47      77 ..      96     125 ..      92     128 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                 +vvG G +gl + ++l ++g+kV++++ ++++ 
  EGE24506.1  5 YAVVGLGSSGLSAVNFLVNHGHKVSIIDGNPNPT 38
                58*************************9998876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.8
                 HHHHHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox  47 qeklekngievllntkveeiegsedgvesvk 77 
                  + l+++  +  +nt + +i+gs+ + ++v+
  EGE24506.1  96 IDTLKARDLTQATNTPIIAITGSNAK-STVT 125
                 5677888888899999*****99986.3354 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0011       1.5      30      62 ..       4      36 ..       2      55 .. 0.93
   2 ?    3.4   0.1      0.03        41      15      88 ..     123     194 ..     114     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrpa 62
                 k  v+G G  Gl+A++  ++ g kV ++D +p+
   EGE24506.1  4 KYAVVGLGSSGLSAVNFLVNHGHKVSIIDGNPN 36
                 678**************************9986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.03
                  SEEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHH CS
  AlaDh_PNT_C  15 gkgtlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaea 88 
                    +tl+G +   ++a ++v  gG  G+ A++  +  + + +vl++++ +le++++l a+  ++l+ ++++l+++
   EGE24506.1 123 TVTTLVGEMA--KHAGMIVGVGGNIGTPALELLTIQNMDLVVLELSSFQLEHISNLAAQGATILNLSADHLDRH 194
                  5567888888..6666666557899*****************************99888777766666655554 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.26       1      61 [.       4      67 ..       4     143 .. 0.73
   2 ?   -0.4   0.0      0.83   1.1e+03       9      50 ..     144     188 ..     134     254 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHH..HHHHHTT.EEE-SSHHHHHHHCSEEEE CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtkekv..eelvaeg.akaaesieelvasldvvit 61
                   k++++GlG  G + ++ l+++g+kv++++ +++ +  ++l +   ++  +  +el++s+d +i+
     EGE24506.1  4 KYAVVGLGSSGLSAVNFLVNHGHKVSIIDGNPNPTlaDKLPTGVhCHFGSLDSELLSSADQIII 67
                   589*************************977654311444433323333333466666655555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.83
                    HHHHHHHHHHHHTT-EEEEE-SSH...HHHHHHHHTTEEE-SSHH CS
  NAD_binding_2   9 vMGsnmalnllkagykvavynrtk...ekveelvaegakaaesie 50 
                    ++G++  + l+ ++++++v ++++   e++ +l+a+ga++++  +
     EGE24506.1 144 NIGTPALELLTIQNMDLVVLELSSfqlEHISNLAAQGATILNLSA 188
                    666666666666666666666665222333334444422222222 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017      0.24       1      30 [.       7      36 ..       7      40 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   +vG G sGl+a  +L ++g++v +++ ++ 
     EGE24506.1  7 VVGLGSSGLSAVNFLVNHGHKVSIIDGNPN 36
                   8999*********************97765 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0014       1.9       8      45 ..       3      40 ..       1     235 [. 0.78

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0014
  NAD_binding_7  8 kkvlvvGgGevAarkvrklleagakvtvvapevkeele 45
                   kk  vvG G+ +++ v+ l++ g kv +++ + ++ l 
     EGE24506.1  3 KKYAVVGLGSSGLSAVNFLVNHGHKVSIIDGNPNPTLA 40
                   7889*************************988533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3332.73
//
Query:       EGE24507.1  [L=391]
Description: cell division protein FtsW [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-82  276.2  28.9    4.1e-82  276.1  28.9    1.0  1  FTSW_RODA_SPOVE  Cell cycle protein
  ------ inclusion threshold ------
        0.4   10.6   0.1        0.4   10.6   0.1    2.4  3  SLATT_1          SMODS and SLOG-associating 2TM effector doma


Domain annotation for each model (and alignments):
>> FTSW_RODA_SPOVE  Cell cycle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.1  28.9   4.6e-86   4.1e-82       3     357 ..      20     379 ..      18     381 .. 0.91

  Alignments for each domain:
  == domain 1  score: 276.1 bits;  conditional E-value: 4.6e-86
  FTSW_RODA_SPOVE   3 llllvllllvilGlvmiysaslveslvlfgdsfvlfirqlvylllglivfvlllriplk..fleklakllliislllLvlvkvp..lgssanGA 92 
                      +ll+ l+l+++++l+mi sas+  s+ +   s  +f  ql+y+++g +++++++ripl+    ++ + +++++ +++L l+ ++  +g ++nG+
       EGE24507.1  20 VLLTSLSLIICISLLMIASASIPFSAARDLASLRFFWYQLAYVVIGTMIAMIVYRIPLRvyYQRTHINVVFLMWVTALGLLILTamFGDVINGS 113
                      56778899999**************9999999***************************742333445555555544444444444******** PP

  FTSW_RODA_SPOVE  93 krWirlggisiqPsEfvkialilflAavlskkkkevksrlrellillvivllilvlillqpdlgtavllliillvvlflsglslklilaivlal 186
                      +rW++lg++++q  E++k +++++ A +++++++e +s+  + + ll+  l + +l+l+qpd+gt+++l+++l+v++f+sg++  + + i+   
       EGE24507.1 114 RRWLDLGIFNLQAGEVAKAVMVFVTADYVVRRSAELRSNVFTGVRLLAWYLPVGGLLLFQPDFGTVLVLFATLIVIIFVSGAPALQYAWILF-- 205
                      *******************************99999999999999999999999*****************************988888887.. PP

  FTSW_RODA_SPOVE 187 ilviaivllilledyqvkrvtslldpfkdplgsgYqviqsliAigsGGllGkGlgnsqqkleyLPeahtDfIfavigEelGlvGvllllllffl 280
                      ++++   + + le+y+++r+ s+ d+f+d +gs +q+  sliA g+G l G G g s+qkl  LPeahtDf +a+ gEelG++Gv+++l+l +l
       EGE24507.1 206 MAIVLGGIAAWLEPYRRERILSFTDAFDDIQGSDFQLARSLIAYGRGQLSGIGYGDSVQKLSHLPEAHTDFLLAITGEELGFLGVATVLFLEML 299
                      455555555789********************************************************************************** PP

  FTSW_RODA_SPOVE 281 livrglriark...akdrfgsllavgivllivvqsfinigmvlGllPvtGltlPflSyGGsSllalliligillnisree 357
                      +i+ +++i+ +   +++   s   +g +++i+ q++in+gm++Gl P++Glt+Pf+S GGsS+++lli ig +l++++e+
       EGE24507.1 300 IILSIMVISLRalkCRQLRLSYTIFGFAVVIFGQVIINAGMTMGLAPTKGLTMPFFSFGGSSMVVLLIMIGFILRVDKES 379
                      ********9888778888888999****************************************************9875 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3      0.27   2.4e+03      43      67 ..      45      69 ..      23      82 .. 0.59
   2 ?   -3.1   0.0      0.78     7e+03      23      44 ..      83     104 ..      73     117 .. 0.61
   3 ?   10.6   0.1   4.5e-05       0.4      30      76 ..     180     224 ..     173     239 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.27
     SLATT_1 43 alrafgelsvdlvgvlaavaaalla 67
                a+r + +l + + +++ +v+++++a
  EGE24507.1 45 AARDLASLRFFWYQLAYVVIGTMIA 69
                3444444444555555555555544 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.78
     SLATT_1  23 aakrwrlllillellalllaal 44 
                 ++++  + l+ +++l+ll+ ++
  EGE24507.1  83 RTHINVVFLMWVTALGLLILTA 104
                 4445555555666666655444 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 4.5e-05
     SLATT_1  30 llillellalllaalrafgelsvdlvgvlaavaaallaWlelkqyee 76 
                 l+++++l  ++++ ++ +++l+++++ ++a v + ++aWle  + e+
  EGE24507.1 180 LVLFATL--IVIIFVSGAPALQYAWILFMAIVLGGIAAWLEPYRRER 224
                 2333333..33344445799********************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2714.68
//
Query:       EGE24508.1  [L=464]
Description: multidrug efflux protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-55  186.6  46.0    1.3e-28   99.7  15.4    3.7  4  MatE             MatE
      2e-06   27.9  12.8      2e-06   27.9  12.8    5.1  4  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4  10.6   1.7e-32   1.5e-28       1     161 []      26     186 ..      26     186 .. 1.00
   2 ?    1.9   0.1     0.018   1.6e+02      79     107 ..     199     227 ..     193     233 .. 0.76
   3 !   99.7  15.4   1.4e-32   1.3e-28       1     160 [.     253     416 ..     253     417 .. 0.98
   4 ?   -0.9   0.8      0.12   1.1e+03      74      94 ..     427     447 ..     424     452 .. 0.82

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 1.7e-32
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqils 99 
                 P++l++++++  s+idt+++g+ g+ +lAav+++ s++  ++v l+g++t+l+++++q +Gak+ ++++e  rqgl+ ++l++++ ++l++l + ++  
  EGE24508.1  26 PMLLAQIAQVGTSFIDTIMAGGAGKGNLAAVALGGSVFITVYVTLMGVMTSLNPMIAQLFGAKKSHEIGEMGRQGLWYGVLMGVLGMILMWLSITPFGL 124
                 99************************************************************************************************* PP

        MatE 100 lftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplnyl 161
                  +  de    ++k+yl +++l +pa  ++ +l ++  +  k+k+++ +s +++l+nipln++
  EGE24508.1 125 WLDIDESTFIITKQYLWFIGLAMPAAMIHRALHAYASSLNKPKIIMWVSWLCFLINIPLNWI 186
                 ************************************************************97 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.018
        MatE  79 llllsliiallvllfseqilslftqdeev 107
                 +++++l++a++ +l++ +++ l+++d+++
  EGE24508.1 199 GAGCGLATAIVFWLNAIILFILIQKDKQL 227
                 56899999999777777777777777664 PP

  == domain 3  score: 99.7 bits;  conditional E-value: 1.4e-32
        MatE   1 Pialenllesllslidtllvgrl...gskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseq 96 
                 Pi l++++e+++++ +++lv+rl    ++ +Aa +ia+s++sl+f+++ +l++++t++vg++lG + f+ra+ +  +++ +++l+s+++a+++++f+ +
  EGE24508.1 253 PIGLSFFIEVSIFTCIMFLVARLngnTEDYVAAQQIAISLTSLIFIIPQSLGISTTVRVGYSLGCEEFNRARYISGVSIATAILISIVTAIFLVAFRYP 351
                 99**********************655778********************************************************************* PP

        MatE  97 ilslftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislisl.llniplny 160
                 ++s++t+d +v+ +a   +++++ +++++a+q+v+s +lrg++ t +p++i +i++  ++++ +y
  EGE24508.1 352 LVSMYTDDMAVIGIAGSVILYAAAFQLGDAIQCVASYALRGYKVTTIPMVIHIIAFwGCGLIPGY 416
                 ************************************************************99988 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.12
        MatE  74 qglilllllsliiallvllfs 94 
                 +g++++l++sl +a+++ll+ 
  EGE24508.1 427 YGFWTTLVVSLGVAAVLLLWY 447
                 789999999999999988775 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.6     0.074   6.6e+02     103     138 ..      35      71 ..       5      77 .. 0.53
   2 ?    0.5   0.7     0.062   5.6e+02      78     114 ..      88     123 ..      73     136 .. 0.48
   3 !   27.9  12.8   2.2e-10     2e-06       2      85 ..     140     229 ..     139     300 .. 0.82
   4 ?   -3.6  20.4       1.2   1.1e+04      30     135 ..     333     445 ..     329     450 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.074
  Polysacc_synt_C 103 ivvylllllllgllllaal.alllavlvgalvYllll 138
                      + + ++  ++ g     +l a++l++ v + vY+ l+
       EGE24508.1  35 VGTSFIDTIMAGGAGKGNLaAVALGGSVFITVYVTLM 71 
                      3333233333333333355578888888888888765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.062
  Polysacc_synt_C  78 rrllgiklellrrllkpllaalvmgivvylllllllg 114
                      ++   i  + ++ l+ + +++ v+g+++++l    +g
       EGE24508.1  88 KKSHEIGEMGRQGLW-YGVLMGVLGMILMWLSITPFG 123
                      555555553333443.333333333332223333333 PP

  == domain 3  score: 27.9 bits;  conditional E-value: 2.2e-10
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli......plfgivGaaiatvlallvvavlnlyalrrllgikl 85 
                      L ++ l+++ +++++ l+++  +l+++ki+++++ +++l+++ ln++++      p +g  G  +at++ + + a+++++++++  +++ 
       EGE24508.1 140 LWFIGLAMPAAMIHRALHAYASSLNKPKIIMWVSWLCFLINIPLNWIFVygkfgmPALGGAGCGLATAIVFWLNAIILFILIQKDKQLQA 229
                      66778999999999***********************************85555555556************************988877 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 1.2
  Polysacc_synt_C  30 ialkalvigalvklilnllliplf.......givGaaiatvlallvvavlnlyalrrllgiklellrrllkpllaalvmgiv..vylllllllg 114
                      +a+++++++a++ +++ ++l+ ++       gi G +i  ++a+ ++ +++ +a + l g+k++    ++ +++a  ++g++   ++ ++  +g
       EGE24508.1 333 TAILISIVTAIFLVAFRYPLVSMYtddmaviGIAGSVILYAAAFQLGDAIQCVASYALRGYKVT-TIPMVIHIIAFWGCGLIpgYFMAFHGGMG 425
                      578999***************644444444499******************************4.34444688888888888643344444444 PP

  Polysacc_synt_C 115 llllaal.alllavlvgalvYl 135
                      +     + +l+++++v+a++ l
       EGE24508.1 426 IYGF--WtTLVVSLGVAAVLLL 445
                      4433..3366666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3465.70
//
Query:       EGE24509.1  [L=193]
Description: FxsA cytoplasmic membrane protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-23   80.7   6.8    1.3e-22   80.0   6.8    1.3  1  FxsA             FxsA cytoplasmic membrane protein
  ------ inclusion threshold ------
      0.023   15.3   3.3       0.05   14.2   3.3    1.6  1  DoxX             DoxX
       0.12   12.4  15.0       0.54   10.3   5.8    2.2  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
       0.19   11.9   9.0       0.24   11.6   9.0    1.1  1  EI24             Etoposide-induced protein 2.4 (EI24)
        5.6    7.6   9.9        5.8    7.5   6.1    2.1  2  TcpE             TcpE family
        5.8    6.9  12.1        9.2    6.3   0.8    2.1  2  Sensor           Putative sensor


Domain annotation for each model (and alignments):
>> FxsA  FxsA cytoplasmic membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   6.8   4.3e-26   1.3e-22       2     108 ..       7     122 ..       6     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 4.3e-26
        FxsA   2 lllllpvlEilllvlvasaiGvlatllllvltallGallvrrqgrralrrlqe..klaqgelpaee.......lldglllllggvLLllPGfvtdvlGl 91 
                 ++l+++v+E+ll++lva++i++++++++++++a++G+++++++  ++   +q+  ++++g +p+ +       l++++++ ++g+LLllPG++tdv++l
  EGE24509.1   7 IALIWFVIEMLLWYLVAQFISGWYVFFWFIIAAIIGIMMIKKAAKSLNPMAQQmkAMQRGVIPNPSnqpaestLVKSIAMGVAGLLLLLPGLLTDVAAL 105
                 5789*************************************98877665555411455555444333455557************************** PP

        FxsA  92 llllPptRkllrrllkr 108
                 +ll+P++++ l++++k+
  EGE24509.1 106 VLLVPFIQTRLTAAAKN 122
                 *********99988875 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.3   1.7e-05      0.05       3      77 ..      35     112 ..      33     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
        DoxX   3 lllRlllgvlfiahGlqkltgfglegtaaslaalglpp....pellaylaalvElvgglllllGlltRlaAlalavtll 77 
                 +++  ++g+++i + + +l+ ++ ++++a+   + + p    +e +++  +++ ++g llll Gllt +aAl+l+v  +
  EGE24509.1  35 FIIAAIIGIMMIKKAAKSLN-PMAQQMKAMQRGVIPNPsnqpAESTLVKSIAMGVAGLLLLLPGLLTDVAALVLLVPFI 112
                 6677889999**99999999.666666666664444446664677777777777777777788***********98665 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.8   0.00018      0.54      48     107 ..       4      65 ..       1      67 [. 0.49
   2 ?    7.6   1.8    0.0012       3.7      32      63 ..      79     110 ..      74     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
  Phage_holin_3_6  48 llalllllval.alalaalwlaaliv...aavllvlagvlalvglkklkkakplpertieelke 107
                      l++++l+++ + + +l ++ +a +i      +++++a++ +++++kk++k+  ++++ ++ +++
       EGE24509.1   4 LVGIALIWFVIeM-LL-WYLVAQFISgwyVFFWFIIAAIIGIMMIKKAAKSLNPMAQQMKAMQR 65 
                      3333333333321.11.12233333333346777777777777777777755568777777665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0012
  Phage_holin_3_6  32 ragsgagllgaagvlallalllllvalalala 63 
                       +++ +++ +a+++l+l +ll+ ++al+l++ 
       EGE24509.1  79 TLVKSIAMGVAGLLLLLPGLLTDVAALVLLVP 110
                      688999*********************98773 PP

>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   9.0   8.1e-05      0.24      30     115 ..       6     114 ..       1     126 [. 0.54

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.1e-05
                 HHHHHHHHH....-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHH...HH.HH.............CCTTSHHHHHHHHHHHHHH CS
        EI24  30 fllllvlll....wvllasllvllllllplwlfplvalllaapf.......ygllaekv...ekrhl.............glvkslaeslkslllllll 101
                  ++l+++++    w+l  +  +++++ +++w+  ++a +++ ++       ++ +a++    +   +              lvks+a ++  lllll+ 
  EGE24509.1   6 GIALIWFVIemllWYL--VAQFISGWYVFFWF--IIAAIIGIMMikkaaksLNPMAQQMkamQ---RgvipnpsnqpaesTLVKSIAMGVAGLLLLLPG 97 
                 2222222222222311..22333333333333..34444444442233444444444444330...1455666666666689***************** PP

                 HH...HHHHHHHTTHHH CS
        EI24 102 ll...vllplliPvvgl 115
                 ll    +l+ll+P++ +
  EGE24509.1  98 LLtdvAALVLLVPFIQT 114
                 *98855566688*9975 PP

>> TcpE  TcpE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.1    0.0019       5.8      28      73 ..       8      48 ..       3      63 .. 0.70
   2 ?    1.6   0.1      0.13     4e+02      35      69 ..      88     116 ..      75     132 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0019
        TcpE 28 qiivfvlvlvlllllaslipvikgvlpflllyivipvvltwllsel 73
                 +i+fv+ ++l++l+a++i+ ++ +++f+     i++++++++ ++
  EGE24509.1  8 ALIWFVIEMLLWYLVAQFISGWYVFFWFI-----IAAIIGIMMIKK 48
                689************99999966666555.....444444444433 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.13
        TcpE  35 vlvlllllaslipvikgvlpflllyivipvvltwl 69 
                 v+ llll   l+++++ v    +l++++p++ t+l
  EGE24509.1  88 VAGLLLL---LPGLLTDVA---ALVLLVPFIQTRL 116
                 2222222...344444444...6677777776665 PP

>> Sensor  Putative sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   4.7    0.0059        18     100     159 ..       7      65 ..       2      67 .. 0.84
   2 ?    6.3   0.8    0.0031       9.2       2      34 ..      80     112 ..      80     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0059
      Sensor 100 lglvlfvvavvllalalalltaPlwtlpeallvavlGlllllvllwvvrglarlqallar 159
                 ++l++fv+ ++l+ l +++++ ++ ++++ +++a++G++++  ++  ++ +a+   ++ r
  EGE24509.1   7 IALIWFVIEMLLWYLVAQFISGWY-VFFWFIIAAIIGIMMIKKAAKSLNPMAQQMKAMQR 65 
                 458899999999999999999888.579999999*******9999999999998888766 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0031
      Sensor   2 lllglplgvaafvllvtglslglgllvllvGlp 34 
                 l+ ++++gva ++ll+ gl++ ++ lvllv + 
  EGE24509.1  80 LVKSIAMGVAGLLLLLPGLLTDVAALVLLVPFI 112
                 567899***********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 1586.10
//
Query:       EGE24510.1  [L=196]
Description: Holliday junction resolvase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-52  174.8   0.9    1.1e-51  174.6   0.9    1.1  1  RuvC      Crossover junction endodeoxyribonuclease RuvC
     0.0017   18.4   0.0     0.0025   17.9   0.0    1.2  1  DUF3882   Lactococcus phage M3 protein
  ------ inclusion threshold ------
        2.4    8.7   6.7         12    6.5   0.1    3.4  4  FliC_SP   Flagellin structural protein


Domain annotation for each model (and alignments):
>> RuvC  Crossover junction endodeoxyribonuclease RuvC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.9   1.9e-55   1.1e-51       1     148 []       4     155 ..       4     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.6 bits;  conditional E-value: 1.9e-55
                 EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE---S-HHHHHHHHHHHHHHHHHHH-.....-SEEEEEE-S----HHHHHHHHHHHHHHHHHHHTTT- CS
        RuvC   1 ilGiDPGsrktGygvieeagrklslltsgvirtksdplserlkavfdaveelldaye.....pdalaieqvffaknvdsvlklaqarGvvilaalerei 94 
                 i+GiDPGsr tGyg+i+ + ++l++l++g irt+s +++er+ ++f++v++++++y+     p + aieqvf+a+n+ds+lkl+qarG++i a+  + +
  EGE24510.1   4 IIGIDPGSRLTGYGIISTNNDQLTFLDAGTIRTNSSDITERIAQIFAGVSRIVNHYQkysnkPIQAAIEQVFMANNPDSALKLGQARGAAIAALTAQDL 102
                 89****************************************************997444446789********************************* PP

                 -EEEEEHHHHHHHHTSSTT--HHHHHHHHHHHTT----SS.S-THHHHHHHHHH CS
        RuvC  95 svaeytpsqvkkavtGigkaekeqvqalvkrlLklkakpkpadaaDalavaith 148
                 +v+eyt++q+k+av G g+a+keqv+a+v r+L l   p+ adaaD la ai+h
  EGE24510.1 103 QVSEYTARQIKQAVCGYGAADKEQVTAMVCRILSLDIIPQ-ADAADGLACAICH 155
                 ****************************************.************9 PP

>> DUF3882  Lactococcus phage M3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.1e-07    0.0025      19     152 ..      14     154 ..       2     158 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.1e-07
                 EEEEEEETTEEEEEEE---...-TTS-HHHHHHHHHHHHHHHHHHTT-TT...-EEEEE-----SSHHHHHHHHHHHHHHHHHHBT...TBS-EEEE-. CS
     DUF3882  19 tGyafrkdnevvvGsikay...nkkkdalerakdivdaikevieeydlkd...yflaieepiitrkrkgsisliranGsflGvidn...lvnGyvdvd. 107
                 tGy +  +n+  +  + a+   +++ d  er  +i  ++  ++++y+ +       aie+  ++ +   ++ l +a G  + ++ +   +v  y+  + 
  EGE24510.1  14 TGYGIISTNNDQLTFLDAGtirTNSSDITERIAQIFAGVSRIVNHYQKYSnkpIQAAIEQVFMANNPDSALKLGQARGAAIAALTAqdlQVSEYTARQi 112
                 77777766555554444441115778999***************9986541116789**********************99998651114558886551 PP

                 HHHHHHHTT--SSHHHHHHHHHHHHHHTTSS-TT---HHHHHHHH CS
     DUF3882 108 nskwcsyhlikGkrelrkeeslellkatnlvddndkdddiadayn 152
                     c+y      +e+       +l + +++++ d  d +a a +
  EGE24510.1 113 KQAVCGYGAA--DKEQVTAMVCRIL-SLDIIPQADAADGLACAIC 154
                 3457888643..3344444444444.7888888888888888876 PP

>> FliC_SP  Flagellin structural protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.002        12      20      39 ..      31      50 ..      14      67 .. 0.84
   2 ?   -1.0   0.1      0.44   2.6e+03      30      44 ..      67      81 ..      60      86 .. 0.84
   3 ?   -1.1   0.1      0.47   2.8e+03      26      36 ..      90     100 ..      81     103 .. 0.59
   4 ?    3.9   0.3     0.013        76      18      37 ..     115     134 ..      90     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.002
     FliC_SP 20 sglsaaqqsaatamvaQINA 39
                +g+  +++s +t  +aQI A
  EGE24510.1 31 AGTIRTNSSDITERIAQIFA 50
                678899************77 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.44
     FliC_SP 30 atamvaQINAvNkPp 44
                + a++ Q+   N+P 
  EGE24510.1 67 IQAAIEQVFMANNPD 81
                678999999999996 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.47
     FliC_SP  26 qqsaatamvaQ 36 
                   +a++a  aQ
  EGE24510.1  90 RGAAIAALTAQ 100
                 44555555444 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.013
     FliC_SP  18 AtsglsaaqqsaatamvaQI 37 
                 A+ g  aa++  +tamv  I
  EGE24510.1 115 AVCGYGAADKEQVTAMVCRI 134
                 7789999*********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 1680.61
//
Query:       EGE24511.1  [L=70]
Description: cold shock-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-28   96.1   1.1    8.6e-28   96.0   1.1    1.0  1  CSD            'Cold-shock' DNA-binding domain
  ------ inclusion threshold ------
       0.01   15.5   0.1      0.014   15.0   0.1    1.4  1  OB_RNB         Ribonuclease B OB domain
        0.2   11.3   0.0       0.22   11.2   0.0    1.1  1  Lysyl_oxidase  Lysyl oxidase


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   1.1   1.4e-31   8.6e-28       2      65 ..       6      69 ..       5      70 .] 0.97

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 1.4e-31
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                 GtVkwfn++kgfGFI++++g++dvF H+sai+g+gf++L+egq+V F + egkkgp+A+++ k
  EGE24511.1  6 LGTVKWFNESKGFGFIAQDNGGQDVFAHYSAITGSGFKTLAEGQKVAFILGEGKKGPQAEEIEK 69
                59**********************************************************9986 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   2.4e-06     0.014       7      23 ..      15      31 ..       7      40 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.4e-06
                SSS-EEEEECT.TEEEE CS
      OB_RNB  7 kkGFGFlipdegkeDif 23
                +kGFGF+ +d g++D+f
  EGE24511.1 15 SKGFGFIAQDNGGQDVF 31
                79**************9 PP

>> Lysyl_oxidase  Lysyl oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.7e-05      0.22      88     115 ..      28      56 ..      18      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.7e-05
  Lysyl_oxidase  88 mevfaeydlldln.gkkvaeGhKasFcLe 115
                     +vfa+y+ ++ +  k +aeG+K +F L 
     EGE24511.1  28 QDVFAHYSAITGSgFKTLAEGQKVAFILG 56 
                    589*****999886899*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 638.09
//
Query:       EGE24512.1  [L=136]
Description: hypothetical protein EA1_07352 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1029.51
//
Query:       EGE24513.1  [L=340]
Description: ketol-acid reductoisomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-75  251.0   0.7      5e-75  250.6   0.7    1.1  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
    1.3e-62  210.4   0.2    2.5e-62  209.4   0.3    1.5  2  IlvC            Acetohydroxy acid isomeroreductase, catalytic
    3.6e-07   30.7   0.1    7.3e-07   29.7   0.1    1.5  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    8.3e-06   25.3   0.0    1.3e-05   24.7   0.0    1.2  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    1.1e-05   25.7   0.0    2.7e-05   24.4   0.0    1.7  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00078   20.1   0.5     0.0019   18.9   0.1    1.8  1  CoA_binding     CoA binding domain
     0.0012   18.5   0.2     0.0076   15.9   0.2    2.1  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0026   18.2   0.1     0.0063   16.9   0.1    1.6  1  NAD_binding_7   Putative NAD(P)-binding
     0.0033   18.2   0.0     0.0067   17.3   0.0    1.5  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
     0.0034   16.4   0.0     0.0072   15.4   0.0    1.5  2  PDH             Prephenate dehydrogenase
      0.006   16.7   0.0      0.013   15.6   0.0    1.5  1  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
  ------ inclusion threshold ------
      0.017   15.1   0.2        2.1    8.3   0.2    2.3  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
        0.1   12.5   0.2       0.17   11.7   0.2    1.3  1  Rossmann-like   Rossmann-like domain


Domain annotation for each model (and alignments):
>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.6   0.7   3.6e-78     5e-75       2     165 .]      16     179 ..      15     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 250.6 bits;  conditional E-value: 3.6e-78
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-EEEESSSHHHH CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDelqkevyeeeiepnlkegkalafahGfnih 100
                 +++kk+a+iGyGsqGha+alnl+dsg+dv+vglr+gs+s+kkA+++g++v++++eav+ advvmil+PDe+q+e+y+e iepn+k+g++lafahGf ih
  EGE24513.1  16 IQSKKVAIIGYGSQGHAHALNLKDSGVDVTVGLRQGSASWKKAENSGLKVAETSEAVAGADVVMILTPDEFQRELYKEVIEPNIKQGATLAFAHGFAIH 114
                 89************************************************************************************************* PP

                 TTSS---TTSEEEEEEESS-SHHHHHHHHTT----EEEEEEE-SSS-HHHHHHHHHHHTTHHHH- CS
        IlvN 101 fglikppkdvdvvlvAPkgpGhlvreeyeegkGvpaliaveqdasgkakelalayakgiGatraG 165
                 +++++p++d+dv++vAPk+pGh+vr+e+++g+G+p lia+ +dasg ak+lal+ya g+G++r+G
  EGE24513.1 115 YNQVEPRADLDVIMVAPKAPGHTVRSEFTKGGGIPDLIAIWRDASGGAKQLALSYAAGVGGGRSG 179
                 ***************************************************************98 PP

>> IlvC  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.1   8.5e+03      42      83 ..      91     133 ..      87     143 .. 0.65
   2 !  209.4   0.3   1.8e-65   2.5e-62       1     144 []     185     328 ..     185     328 .. 1.00

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.1
                 HHHHTHHH.HHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH CS
        IlvC  42 yfeclhel.klivdliyegGiakmresiSdtaeygdltagprv 83 
                 y+e+++   k  + l   +G+a  ++++   a      ++p++
  EGE24513.1  91 YKEVIEPNiKQGATLAFAHGFAIHYNQVEPRADLDVIMVAPKA 133
                 6666643337777777778888888888777777666666665 PP

  == domain 2  score: 209.4 bits;  conditional E-value: 1.8e-65
                 HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT--HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHS-HHHHHHHHHHHHHH CS
        IlvC   1 FkeEtetDlfgEqavLcGgvselveagFetlveaGyspelAyfeclhelklivdliyegGiakmresiSdtaeygdltagprviteevkeemkeileei 99 
                 Fk+EtetDlfgEqavLcGg +elv++gFetlveaGy pe+Ayfeclhelklivdl+yegGia m++siS++aeyg++++gp+vi+e+++++m+  l++i
  EGE24513.1 185 FKDETETDLFGEQAVLCGGAVELVKMGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGIADMNYSISNNAEYGEYVTGPEVINEQSRAAMRHALKRI 283
                 9************************************************************************************************** PP

                 HTTHHHHHHHHHHHTTSHHHHHHHHHHHTSHHHHHHHHHHHCHTT CS
        IlvC 100 qsGefakevieenkagrpelkklrkeeaeheiekvgkklralmpw 144
                 q+Ge+ak +i+e ++++p++++ r+++a h+ie++g+klra+mpw
  EGE24513.1 284 QDGEYAKMFIAEGQTNYPSMTARRRNNAAHPIETTGEKLRAMMPW 328
                 *******************************************98 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   5.3e-10   7.3e-07       1      81 [.      20      94 ..      20     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 5.3e-10
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlsel 81
                   k++iiG+G++g+a a++l  +g    +++v+ ++   + ++ ae+ g kv +  ++ea++ advv +  + e   e+ +e+
     EGE24513.1 20 KVAIIGYGSQGHAHALNLKDSG---VDVTVGLRQGSASWKK-AENSGLKVAE--TSEAVAGADVVMILTPDEFQRELYKEV 94
                   79********************...****995555555544.4555666666..9*************9999988888887 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.3e-09   1.3e-05      33     100 ..      15      83 ..       5     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.3e-09
                   -GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH.CHHHHTCEECSHHHHHHH-SEEEE-S- CS
  2-Hacid_dh_C  33 elsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee.eeeelgvelvsleellaesDivslhlp 100
                    ++ k+v+iiG+G+ G+a a  lk  g++v++  r+ +++  ++e+ g+++++  e++a +D+v++ +p
    EGE24513.1  15 IIQSKKVAIIGYGSQGHAHALNLKDSGVDVTVGLRQGSASWkKAENSGLKVAETSEAVAGADVVMILTP 83 
                   5789**************************9999998876678999999*****************999 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.9e-08   2.7e-05       1      86 [.      20     105 ..      20     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.9e-08
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHH.HHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EE CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekv.eelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdil 86 
                    k+++iG G  G+  alnl+++g +v+v  r+ ++  +++ ++g+k+ae+ +e+va++dvv+++ +++ + +e++++ + +++k+g++l
     EGE24513.1  20 KVAIIGYGSQGHAHALNLKDSGVDVTVGLRQGSASwKKAENSGLKVAET-SEAVAGADVVMILTPDEFQ-RELYKEvIEPNIKQGATL 105
                    689************************9998766505555556666665.67999*****999888655.677777577889988875 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.4e-06    0.0019       2      89 ..      17     101 ..      16     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.4e-06
                  TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET...TEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SE CS
  CoA_binding   2 kdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevl...glpvyksvdeleektevdvavitvPaesaqeavdelveagikg 89 
                  + +kv++iG g +g+a +++ k+    g+ + +g   + ++ +     gl+v  + +e+++   +dv +i++P e+ +e  +e++e +ik 
   EGE24513.1  17 QSKKVAIIGYGSQGHAHALNLKDS---GVDVTVGLRQGSASWKKAensGLKVA-ETSEAVAG--ADVVMILTPDEFQRELYKEVIEPNIKQ 101
                  578*******99988877777666...999999**999999555535588888.77777777..************************996 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   5.5e-06    0.0076       1      40 [.      21      59 ..      21     137 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.5e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHC CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknG 40
                +ai+G G++G   a +L+  g dvt+ lr+   +++kk+ 
  EGE24513.1 21 VAIIGYGSQGHAHALNLKDSGVDVTVGLRQG-SASWKKAE 59
                69***************99**********99.66666543 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   4.6e-06    0.0063       5      78 ..      16      90 ..      14     103 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.6e-06
  NAD_binding_7  5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele..elvklaeeelekdlegadlviaatddrelneri 78
                   ++ kkv ++G G+ +   + +l ++g +vtv   + ++  +  e+  l+  e ++ ++gad+v++ t+d+  ++++
     EGE24513.1 16 IQSKKVAIIGYGSQGHAHALNLKDSGVDVTVGLRQGSASWKkaENSGLKVAETSEAVAGADVVMILTPDE-FQREL 90
                   5789***************************6655322222224444777778999***********874.44444 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.8e-06    0.0067       2      85 ..      20      97 ..      19     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.8e-06
                  EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHT CS
  GFO_IDH_MocA  2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaalea 85
                  +vaiiG+G  g  h+  ln ++++ +v+  l +++++ ++ ae+ g+++ +  e+++    +d+v++ tp + ++el k+++e 
    EGE24513.1 20 KVAIIGYGSQGHAHA--LNLKDSGVDVTVGLRQGSASWKK-AENSGLKVAETSEAVAG---ADVVMILTPDEFQRELYKEVIEP 97
                  89******9999998..55555599999889999988888.6999***9988888888...9**************99998875 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.2e-06    0.0072       2      75 ..      34     105 ..      33     107 .. 0.87
   2 ?   -3.6   0.0       3.2   4.3e+03      52      72 ..     312     332 ..     312     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.2e-06
                 HHHHHHTT--SEEEEE-SSHHHHHHHHHTTSSSEEES-GGGGCCGSEEEE-S-GGGHHHHHHHHHH.HS-TT-EE CS
         PDH   2 aralrrkgfkvtvigydideekaeaalelglvdeatddieavkeadivvlavPvevilevlkelap.hlkedali 75 
                 a+ l+ +g +vtv ++  +++  ++a++ gl+ + t   eav  ad+v++ +P e  +e  ke+++  +k++a++
  EGE24513.1  34 ALNLKDSGVDVTVGLRQGSAS-WKKAENSGLKVAETS--EAVAGADVVMILTPDEFQRELYKEVIEpNIKQGATL 105
                 889*****9999988877765.566779****99999..7***********************987699998876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.2
                 -S-GGGHHHHHHHHHHHS-TT CS
         PDH  52 avPvevilevlkelaphlked 72 
                 a P+e++ e l+++ p +  +
  EGE24513.1 312 AHPIETTGEKLRAMMPWIGGN 332
                 679999999999999987765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.1e-06     0.013      20      86 ..      15      82 ..       7      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.1e-06
                   --TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHH.HHHCTT-EE--HHHCTTT-SEEEE-S CS
  AdoHcyase_NAD 20 llaGkvavvaGyGdvGkGcaaslkglGarvivtevdPical.qaameGfevvtleevvkkadivvttt 86
                   ++  k++ ++GyG  G   a  lk  G  v+v      ++  +a   G++v++  e+v+ ad+v+  t
     EGE24513.1 15 IIQSKKVAIIGYGSQGHAHALNLKDSGVDVTVGLRQGSASWkKAENSGLKVAETSEAVAGADVVMILT 82
                   7889****************************977766654168889***************998766 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2    0.0015       2.1       1      30 [.      20      49 ..      20     119 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0015
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvr 30
                    k+a++G Gs G a A  l++ g +v++  r
      EGE24513.1 20 KVAIIGYGSQGHAHALNLKDSGVDVTVGLR 49
                    688888888888888888888877665433 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00012      0.17      12     101 ..      20     106 ..      15     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
  Rossmann-like  12 svGiisaGrvGtalgaaleraghvvvgisaisaasreraerrlPdvpvlevedvaaraellllavPdaelpglvkglaatgavraGtiva 101
                    +v ii+ G  G a +  l+ +g  v+      +as ++ae+   + +v+e  + +a a+++++  Pd    +l k++ +   +++G  +a
     EGE24513.1  20 KVAIIGYGSQGHAHALNLKDSGVDVTVGLRQGSASWKKAENS--GLKVAETSEAVAGADVVMILTPDEFQRELYKEVIEP-NIKQGATLA 106
                    799*******************99998888889999999985..89999********************9****999988.455555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2581.03
//
Query:       EGE24514.1  [L=171]
Description: acetolactate synthase 3 regulatory subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-26   91.7   3.4      6e-26   90.4   0.6    2.1  2  ALS_ss_C        Small subunit of acetolactate synthase
    8.7e-16   57.5   0.5    2.1e-15   56.3   0.1    1.9  2  ACT_5           ACT domain
    1.2e-12   47.3   0.1    2.4e-12   46.4   0.1    1.5  1  ACT             ACT domain
    0.00021   21.8   0.7    0.00044   20.8   0.7    1.6  1  ACT_4           ACT domain
  ------ inclusion threshold ------
      0.027   14.5   0.1       0.04   13.9   0.1    1.2  1  CompInhib_SCIN  Staphylococcal complement inhibitor SCIN


Domain annotation for each model (and alignments):
>> ALS_ss_C  Small subunit of acetolactate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.079   2.8e+02      37      63 ..      51      75 ..      40      79 .. 0.76
   2 !   90.4   0.6   1.7e-29     6e-26       1      74 []      92     165 ..      92     165 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.079
                EEEEEEE-HHHHHHHHHHS-GGGEEEE CS
    ALS_ss_C 37 liieltgteekidaliellkpfgilev 63
                l++    t++ki+++ + l +  ++ev
  EGE24514.1 51 LTLTTITTHDKIEQITKQLHK--LIEV 75
                677888899999999999974..3444 PP

  == domain 2  score: 90.4 bits;  conditional E-value: 1.7e-29
                 EEEEEEEEE.-SCHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHS-GGGEEEEEEEEEEEEEST CS
    ALS_ss_C   1 RElaLiKVkaekeerseileiaeifrakivdvspdsliieltgteekidaliellkpfgilevvRtGrvAleRG 74 
                 REl+LiKV+a+ ++r+ei++ a+ifra+ivdvs++ ++i +tg+++k+d +i+++ +  ilevvR+G+++++RG
  EGE24514.1  92 RELMLIKVRATGSNREEIKRNADIFRAQIVDVSTNLYTILITGDAGKLDGFIDVIGRDRILEVVRSGVIGIARG 165
                 9************************************************************************8 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   5.8e-19   2.1e-15       3      62 .]      18      78 ..      16      78 .. 0.97
   2 ?   -2.2   0.0       1.1   3.9e+03       8      14 ..     150     156 ..     138     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 5.8e-19
       ACT_5  3 pgvLeRvlrvvrrrgFevkslnmsttedggtvrieltVes.ersvelLsnQleKLidVlkV 62
                 g L Rv +++++rg+++++ln+ +t+d + +r++lt    ++ +e++++Ql KLi+V+kV
  EGE24514.1 18 AGSLSRVVGLFSQRGYNIDTLNVAATDDPTISRLTLTTITtHDKIEQITKQLHKLIEVVKV 78
                699***********************************999******************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
       ACT_5   8 Rvlrvvr 14 
                 R+l vvr
  EGE24514.1 150 RILEVVR 156
                 7777776 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.1   6.6e-16   2.4e-12       1      66 [.       8      73 ..       8      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 6.6e-16
                EEEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT  1 tvlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66
                + ++v+++++ G L+rv g++++rg+Nid ++++ ++d   ++ +++ ++ ++ +e++ ++l+kl+
  EGE24514.1  8 HLISVLMENEAGSLSRVVGLFSQRGYNIDTLNVAATDDPTISRLTLTTITTHDKIEQITKQLHKLI 73
                6799************************************************************97 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.7   1.2e-07   0.00044       8      79 ..       9      79 ..       2      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.2e-07
       ACT_4  8 rleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitv.eVkdvehLsrviakLraipgVisVe 79
                 ++v +e++ g L++++ ++s+ + ni  +n+ ++  d  +  ++t+  +  +++++++ ++L+++ +V +V+
  EGE24514.1  9 LISVLMENEAGSLSRVVGLFSQRGYNIDTLNVAAT--DDPTISRLTLtTITTHDKIEQITKQLHKLIEVVKVQ 79
                699*******************************5..55777777773699******************9996 PP

>> CompInhib_SCIN  Staphylococcal complement inhibitor SCIN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.1e-05      0.04      35      84 ..      52     103 ..      31     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
  CompInhib_SCIN  35 dktsseyqd..kklaeeLkeLldesnvnkLaagsLnayykrtiliaeykaka 84 
                       t  + +d  ++++++L++L++   v++L+ +s   +  r++++ + +a  
      EGE24514.1  52 TLTTITTHDkiEQITKQLHKLIEVVKVQNLSELSGGHHVERELMLIKVRATG 103
                     3344444442369********************************9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1313.39
//
Query:       EGE24515.1  [L=611]
Description: acetolactate synthase 3 catalytic subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-59  200.3   0.6      5e-57  192.3   0.2    2.3  2  TPP_enzyme_N    Thiamine pyrophosphate enzyme, N-terminal TPP
    3.1e-51  173.2   0.1    1.3e-49  167.9   0.1    2.8  2  TPP_enzyme_C    Thiamine pyrophosphate enzyme, C-terminal TPP
    1.7e-47  160.6   0.1    3.8e-47  159.5   0.1    1.6  1  TPP_enzyme_M    Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
      0.024   14.2   0.1      0.069   12.7   0.0    1.7  2  PPS_PS          Phosphopantothenate/pantothenate synthetase
       0.05   13.4   0.2       0.14   12.0   0.2    1.7  1  ROQ_II          Roquin II domain
        0.4   10.9   2.1        1.4    9.2   0.1    2.8  3  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.3   0.2   1.7e-60     5e-57       1     164 [.      39     201 ..      39     204 .. 0.99
   2 !    6.0   0.0    0.0028       8.3     106     145 ..     529     573 ..     468     575 .. 0.73

  Alignments for each domain:
  == domain 1  score: 192.3 bits;  conditional E-value: 1.7e-60
                   EEHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEE CS
  TPP_enzyme_N   1 mtvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvls 97 
                   m++ae+lv+aL ++gve++fg+pG+ +l+++dal ++++i+++l+rhEq+a+++Ad+y+r tg+ gvvl+tsgpGatn++ta+a+A+ d+iP++vl+
    EGE24515.1  39 MSGAEMLVQALIDEGVEYIFGYPGGAVLHIYDALFKQDKIEHILVRHEQAAGHMADAYSRTTGRTGVVLATSGPGATNTVTAIATAYMDSIPMVVLA 135
                   789********************************************************************************************** PP

                   EE--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHC CS
  TPP_enzyme_N  98 gdrptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvl 164
                   g++p+sl+g++++q e+d +++ rp++k++++v+++e++p ++++A+ +a sgrpgPv++++pkd+ 
    EGE24515.1 136 GQVPSSLIGDDAFQ-ECDMVGVSRPIVKHSFQVRHAEDIPTIIKKAFYIAGSGRPGPVVVDIPKDMT 201
                   **************.**************************************************85 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0028
                   H.....S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHH CS
  TPP_enzyme_N 106 g.....qgvlqqeldqlalfrpvtkyaervtspeelpealrrAir 145
                         q ++q+  d ++l++++ +  +++t+p++++e+l++A++
    EGE24515.1 529 YegrhaQSYMQSLPDFVKLAESYGHKGVKITNPATMQEELKQALE 573
                   04455688899666****************************985 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.053   1.6e+02     109     153 .]     149     196 ..     135     196 .. 0.78
   2 !  167.9   0.1   4.4e-53   1.3e-49       1     153 []     434     582 ..     434     582 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.053
                   ----HHHHHHHTTSE.EEEESSH.HHHHHHHHHHHH.....CSSSEEEEEE CS
  TPP_enzyme_C 109 kpvdfaklaealGak.garvekadveeleealkeal.....ekkgpaliev 153
                   ++ d++ + + + +k  ++v++a  e++  ++k+a+      + gp+++++
    EGE24515.1 149 QECDMVGVSRPI-VKhSFQVRHA--EDIPTIIKKAFyiagsGRPGPVVVDI 196
                   556666666666.5546676677..**********999999999****996 PP

  == domain 2  score: 167.9 bits;  conditional E-value: 4.4e-53
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   d+G++++ aa ++k+ +pr++l+sgglgtmG+glp+A++akla+p+++vv+i+G G+++m++qel+t+ ++nlp++++ lnN+ +gm++++q++ ++
    EGE24515.1 434 DVGQHQMFAALYYKYDEPRQWLNSGGLGTMGVGLPYAMAAKLAHPKKTVVCITGEGSIQMNIQELSTCLQYNLPVKILNLNNAQLGMVKQWQDMLYE 530
                   89*********************************************************************************************** PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   +r+++ + +++  +df+klae++G kg++++++  + ++e lk+ale +g ++i+v
    EGE24515.1 531 GRHAQSY-MQSL-PDFVKLAESYGHKGVKITNP--ATMQEELKQALEMDGLVFIDV 582
                   ***9977.4555.5*************998899..*******************98 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.5   0.1   1.3e-50   3.8e-47       1     136 [.     231     365 ..     231     366 .. 0.99

  Alignments for each domain:
  == domain 1  score: 159.5 bits;  conditional E-value: 1.3e-50
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   i+ka+e l +akrpv++ Gggv   +as+elr+la++l++Pv++tlmg g++p + ++++gmlg+hg+++an+ +++aD++la+G+rfdd r+t++ 
    EGE24515.1 231 IKKAIETLLSAKRPVLYSGGGVVLGNASKELRQLADTLKLPVTNTLMGLGAYPGSGEQFVGMLGMHGTYEANMTMHHADVILAVGVRFDD-RVTNNV 326
                   799***************************************************************************************.9***** PP

                   TTTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHH CS
  TPP_enzyme_M  98 pefapeakiihididpaeigknyqvdlaivgdvketlea 136
                   ++f+p+a+iihididpa+i+k+  ++++ivgdvk +l++
    EGE24515.1 327 KKFCPNATIIHIDIDPASISKTIMAHIPIVGDVKLVLNE 365
                   ************************************987 PP

>> PPS_PS  Phosphopantothenate/pantothenate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   3.5e+03       1      32 [.     238     270 ..     238     276 .. 0.72
   2 ?   12.7   0.0   2.3e-05     0.069      85     153 ..     305     378 ..     290     398 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
      PPS_PS   1 lllakkpvisvNG.NtaaLvaeeiveLaealga 32 
                 ll ak+pv+   G  +   +++e+ +La++l+ 
  EGE24515.1 238 LLSAKRPVLYSGGgVVLGNASKELRQLADTLKL 270
                 789999999655404556788899999988765 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.3e-05
      PPS_PS  85 iysaDvvl.vplEDGDRaeaLvkm...gKkviaiDLNPlsRtar.tatitivdnvvRalpnlteavkelkkksk 153
                 +++aDv+l v +   DR    vk    + ++i iD+ P s +   +a+i+iv +v   l+++ + + e+ k  +
  EGE24515.1 305 MHHADVILaVGVRFDDRVTNNVKKfcpNATIIHIDIDPASISKTiMAHIPIVGDVKLVLNEMLALLAEIDKCID 378
                 567898886788888886554443233679********99775438*****************99999976533 PP

>> ROQ_II  Roquin II domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   4.6e-05      0.14      30      52 ..     521     543 ..     517     547 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
      ROQ_II  30 peqWSalLYgdqdhrshmqSiid 52 
                 + qW  +LY  ++ +s+mqS+ d
  EGE24515.1 521 VKQWQDMLYEGRHAQSYMQSLPD 543
                 68******************976 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00046       1.4      11      57 ..      88     133 ..      46     158 .. 0.74
   2 ?   -0.9   0.1      0.61   1.8e+03      26      52 ..     244     269 ..     225     316 .. 0.66
   3 ?   -2.3   0.0       1.7   5.1e+03      27      37 ..     481     491 ..     456     506 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00046
                     --HHHHHHHHHT.T--EEEEEEBTTTB--HHHHHHHHHHHTTT-EEEE CS
  Asparaginase_C  11 mdtkvlkallkk.gakGvvlegtGvGnlpsallealkeakargivvva 57 
                     + +++ +a+ ++ g  Gvvl++ G G+ ++++   ++ a    i++v+
      EGE24515.1  88 AAGHMADAYSRTtGRTGVVLATSGPGATNTVTA--IATAYMDSIPMVV 133
                     4455555555555889***********998654..4455546665444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.61
                     EEEEEEBTT..TB--HHHHHHHHHHHTTT CS
  Asparaginase_C  26 GvvlegtGv..Gnlpsallealkeakarg 52 
                      v+  g+Gv  Gn++++l++++  +   +
      EGE24515.1 244 PVLYSGGGVvlGNASKELRQLADTL---K 269
                     4666777755588888888888877...3 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.7
                     EEEEEBTTTB- CS
  Asparaginase_C  27 vvlegtGvGnl 37 
                      v+ +tG G++
      EGE24515.1 481 TVVCITGEGSI 491
                     23444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4715.48
//
Query:       EGE24516.1  [L=129]
Description: hypothetical protein EA1_07372 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1008.98
//
Query:       EGE24517.1  [L=165]
Description: LysM domain/BON superfamily protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-13   49.8   0.5    8.2e-13   48.2   0.0    2.1  3  LysM      LysM domain
    1.5e-08   34.9   3.0    2.2e-08   34.3   3.0    1.3  1  BON       BON domain
     0.0039   16.7   3.9     0.0062   16.0   3.9    1.3  1  PT        PT repeat
  ------ inclusion threshold ------
      0.071   12.9   0.1      0.085   12.7   0.1    1.1  1  GspL_C    GspL periplasmic domain


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.3   5.6e+03      22      30 ..      50      59 ..      41      63 .. 0.66
   2 ?   -2.8   0.0       1.6   7.1e+03       8      14 ..      73      79 ..      66      82 .. 0.69
   3 !   48.2   0.0   1.8e-16   8.2e-13       1      44 []     116     164 ..     116     164 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
                HHHHHC.TCS CS
        LysM 22 klleaN.nls 30
                ++++ N n+s
  EGE24517.1 50 RIQAQNvNIS 59
                5666666655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.6
                -HHHHHH CS
        LysM  8 TLwsIAk 14
                TL+++Ak
  EGE24517.1 73 TLSGVAK 79
                7888887 PP

  == domain 3  score: 48.2 bits;  conditional E-value: 1.8e-16
                 EEE-TT--HHHHHHHC...TCHHHHHHHHC..TCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkry...gitveklleaN..nlsspdkifpGqkLkiP 44 
                 YtVk+GD+L++IAk       ++ k+ +aN   ls+p+ki+pGq+L+iP
  EGE24517.1 116 YTVKSGDSLSKIAKEMygnANDYMKIFDANkpMLSDPNKIYPGQVLRIP 164
                 9******************8899*************************9 PP

>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   3.0     5e-12   2.2e-08       4      68 ..      42     107 ..      37     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 5e-12
                 CCHHHHHHHHHHHCHTTGCCCEEEEET.TC.EEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEEE CS
         BON   4 eiaakvkaalakdggldaadinVeven.Gv.VtLsGtVdseaekekAveiarnvaGVkkVvnelkvr 68 
                 eia  + a+++++ +++ ++++V  +   + VtLsG ++++a++e+A  ++ nv  V+ Vv++++v 
  EGE24517.1  42 EIANLLLARIQAQ-NVNISGLKVNYNGdTDtVTLSGVAKTQADRERARLAVGNVQYVETVVDNIEVE 107
                 5666677777776.88888888888886446**********************************96 PP

>> PT  PT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   3.9   1.4e-06    0.0062       7      27 ..      23      43 ..      20      46 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-06
          PT  7 taqPTvqPTgqPtaqPTdqPt 27
                +aqPT +P++ P+ +PT+q +
  EGE24517.1 23 AAQPTAAPAATPAEEPTAQEI 43
                578888888888888888865 PP

>> GspL_C  GspL periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.9e-05     0.085      80     146 ..      40     109 ..      16     120 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHHH.TSTT-EEEEEEEETTTTCEEEEEEESSCHHHHHHHHHHHCTEEEE..EEEEEEETT CS
      GspL_C  80 llkllaalqtale.qvpelelqsldYdgkrgelrlqleakdfaafeqlrakaatkfqve..qgqlasegd 146
                 + + ++ l   ++ q+ +++  +++Y+g  + ++l+  ak +a+ e++r ++  +  ve   + ++ e +
  EGE24517.1  40 AQEIANLLLARIQaQNVNISGLKVNYNGDTDTVTLSGVAKTQADRERARLAVGNVQYVEtvVDNIEVESA 109
                 55555655555555999999999**************************999988444435555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1220.21
//
Query:       EGE24518.1  [L=78]
Description: acyl carrier protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-15   57.5   0.6    1.5e-15   57.3   0.6    1.0  1  PP-binding       Phosphopantetheine attachment site
    0.00021   21.4   0.4    0.00022   21.4   0.4    1.2  1  PP-binding_2     Acyl-carrier
     0.0095   16.1   0.1      0.013   15.6   0.1    1.4  1  Ribosomal_L50    Ribosomal subunit 39S
  ------ inclusion threshold ------
      0.016   14.9   0.1      0.047   13.4   0.0    1.7  2  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
      0.041   14.4   0.2      0.047   14.2   0.2    1.2  1  DUF1493          Protein of unknown function (DUF1493)


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.6   4.1e-19   1.5e-15       2      67 .]       7      73 ..       6      73 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 4.1e-19
  PP-binding  2 klrelvaevlgvpleeidpdtdlf.dlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67
                k++++vae+lg++++ei+ ++++  dlG DSl++vel++a+e  fg++ip++d  e++t++  ++y+
  EGE24518.1  7 KVKDAVAEQLGLSVDEIKNEASFMdDLGADSLDLVELVMAFESSFGITIPDEDSAELTTVQKAIDYV 73
                799*********************77****************************9******999986 PP

>> PP-binding_2  Acyl-carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.4   6.2e-08   0.00022      42      85 ..      31      74 ..       7      78 .] 0.88

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.2e-08
  PP-binding_2 42 edrlwdgldtvefvedveelfdvivsdevadnfetlqeiadlvv 85
                  +d   d+ld ve+v+  e  f ++++de   ++ t+q+  d+v 
    EGE24518.1 31 DDLGADSLDLVELVMAFESSFGITIPDEDSAELTTVQKAIDYVS 74
                  566679***********************************986 PP

>> Ribosomal_L50  Ribosomal subunit 39S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   3.6e-06     0.013      43      76 ..      42      75 ..       2      78 .] 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.6e-06
  Ribosomal_L50 43 aflkrlqqllgheipDykltklhtvkdlveylee 76
                   +++  + ++ g+ ipD   ++l+tv+++++y++ 
     EGE24518.1 42 ELVMAFESSFGITIPDEDSAELTTVQKAIDYVSD 75
                   6777889************************944 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.91   3.3e+03      12      12 ..      18      18 ..       9      25 .. 0.48
   2 ?   13.4   0.0   1.3e-05     0.047      15      31 ..      38      54 ..      37      56 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.91
                     S CS
  Ribosomal_L12_N 12 l 12
                     l
       EGE24518.1 18 L 18
                     2 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.3e-05
                     HHHHHHHHHHHHHTTHH CS
  Ribosomal_L12_N 15 LElseLvkalEekFGVs 31
                     L+l+eLv a+E+ FG++
       EGE24518.1 38 LDLVELVMAFESSFGIT 54
                     89**************8 PP

>> DUF1493  Protein of unknown function (DUF1493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.3e-05     0.047       1      58 [.       1      53 [.       1      67 [. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
     DUF1493  1 ldsiekevlelireelgtklfkgkeveltldtdldedlkldeddaedllekffkrfnV 58
                +++ie++v + + e+lg+ ++     e++ + +  +dl++d  d+ +l+ +f+  f +
  EGE24518.1  1 MSDIEAKVKDAVAEQLGLSVD-----EIKNEASFMDDLGADSLDLVELVMAFESSFGI 53
                789***************977.....8889999*********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 655.81
//
Query:       EGE24519.1  [L=242]
Description: 3-oxoacyl-ACP reductase FabG [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-66  223.4   4.8    3.1e-66  223.3   4.8    1.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    4.7e-58  195.9   1.5    6.2e-58  195.5   1.5    1.1  1  adh_short       short chain dehydrogenase
    4.3e-15   56.1   0.3    8.4e-15   55.1   0.3    1.4  1  KR              KR domain
    1.2e-05   24.9   0.1    5.9e-05   22.7   0.1    2.0  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0011   18.8   0.5     0.0015   18.5   0.5    1.2  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
      0.044   13.9   0.2       0.11   12.6   0.2    1.6  1  DapB_N          Dihydrodipicolinate reductase, N-terminus
       0.07   12.7   2.2       0.12   12.0   0.2    2.1  2  LDcluster4      SLOG cluster4 family
        0.1   12.0   0.0       0.14   11.5   0.0    1.1  1  DUF1776         Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3   4.8   1.4e-69   3.1e-66       1     233 [.      10     240 ..      10     241 .. 0.97

  Alignments for each domain:
  == domain 1  score: 223.3 bits;  conditional E-value: 1.4e-69
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Ga +gIG+aiAk++ +eG  v+ t  ++++++++ +  +e g     +DV + e++++l+ee+ + +g++++lvnnagi+++  g ++ +++e+++ 
    EGE24519.1  10 GASRGIGKAIAKRFTDEGHFVIGTATSKKGAEAIGDYLSESGGIGRILDVCNHEDIDKLFEEIDSVYGGINVLVNNAGITKD--GLLMRMKDEDWAS 104
                   999***************************88888888887776799***********************************..************* PP

                   HHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHH CS
  adh_short_C2  98 aldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleel 192
                   ++d+nl+++++++++a++ +mk++ g+i+n++sv ++++ ++++ y+a+Ka++e+++r+lA+e+g++g++vN+v+pg+++T+++++++  ++l + +
    EGE24519.1 105 VIDTNLTAVYRMSRRAVRgMMKARqGRIINITSVVGQMGNAGQANYAATKAGVEGFSRALAREIGSRGVTVNCVAPGFVETDMTEALD--ERLVNSM 199
                   ******************9998766**************************************************************8..99***** PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                    +  p+gr+++pee+a+a+ fLasd+asyitG++l+v+gG+
    EGE24519.1 200 LDAVPIGRMAQPEEIAAAVSFLASDDASYITGAVLAVNGGM 240
                   ****************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   1.5   2.8e-61   6.2e-58       1     192 [.       4     193 ..       4     195 .. 0.97

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 2.8e-61
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 k+vlvtGas+GIG+aiak++  eG  v+ ++ s++ +e++ + l e g   +   +Dv ++e++++l+e++ + +g+++vLvnNAGit++g   ++++e
  EGE24519.1   4 KIVLVTGASRGIGKAIAKRFTDEGHFVIGTATSKKGAEAIGDYLSESG--GIGRILDVCNHEDIDKLFEEIDSVYGGINVLVNNAGITKDGLLMRMKDE 100
                 79***********************************99999999974..79999******************************************** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 +w +vi++Nlt+v+ ++r +++ m+k+++GrI+n++Sv+g++++ag+a Y+A+Ka+v+g++r+la+e+ ++g++vn+vaPG+v+Tdm+++l e
  EGE24519.1 101 DWASVIDTNLTAVYRMSRRAVRGMMKARQGRIINITSVVGQMGNAGQANYAATKAGVEGFSRALAREIGSRGVTVNCVAPGFVETDMTEALDE 193
                 ****************************************************************************************98765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.3   3.7e-18   8.4e-15       3     174 ..       6     176 ..       5     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 3.7e-18
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 +l+tG+  g+G+++a+   ++g   +   +     ++ ++a  + l+++g     + +Dv +++++ +l+eei++  + i+  ++ Ag+++d+ll++m+
  EGE24519.1   6 VLVTGASRGIGKAIAKRFTDEGHFVIGTATS----KKGAEAIGDYLSESGGIG--RILDVCNHEDIDKLFEEIDSVYGGINVLVNNAGITKDGLLMRMK 98 
                 79********************765544333....455666677788876533..4479**************************************** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH.HHHTEEEEE CS
          KR 102 aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs.qglpavsin 174
                 +ed+++v+   ++++  + +   +     +   ++ ++S+ g +g+agqanYaa+ a ++++ +  ++  g ++v++n
  EGE24519.1  99 DEDWASVIDTNLTAVYRMSRRAVRgmmkARQGRIINITSVVGQMGNAGQANYAATKAGVEGFSRALAReIGSRGVTVN 176
                 ***************99987665535546677899**********************999999876441466677766 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   2.6e-08   5.9e-05       1      69 [.       6      76 ..       6     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.6e-08
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHHT-SEEE CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.....elveldltdrsalerlfkeeqpdavi 69
                +lVtGa+  iG+a++k++ ++g+ vig +   +++++a  + l         ld+++++++++lf+  ++d v+
  EGE24519.1  6 VLVTGASRGIGKAIAKRFTDEGHFVIGTATS-KKGAEAIGDYLsesggIGRILDVCNHEDIDKLFE--EIDSVY 76
                79*************************9999.44444444444899*99999**************..678776 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.5   6.7e-07    0.0015       1     150 [.      10     187 ..      10     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.7e-07
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH...CTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.......--TCC......HHHH.. CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele...aeeglevvegdvtdvedlaealkgadaVvsal.......ggggk......deeg.. 77 
                     GA+ ++G++++k+  ++g h v   + +++ ++++    +e+g     +dv ++ed+ + ++ +d V+  +       g   +      +  +  
      EGE24519.1  10 GASRGIGKAIAKRFTDEG-HFVIGTATSKKGAEAIGdylSESGGIGRILDVCNHEDIDKLFEEIDSVYGGInvlvnnaGI--TkdgllmR--Mkd 99 
                     9****************6.888888877766665442224555556678****************999888777764422..12345440..144 PP

                     .................HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHH.HHHHHHHHHHSSSEEEEEEE-CEE-ST CS
  NAD_binding_10  78 .................aknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaa.kraaeellrasgldwTivrpggLtdep 150
                                       +++v+ + +a   R++ ++++  g  ++g+ g+ n+ + ka ++   ra ++++ ++g++   v pg+ + + 
      EGE24519.1 100 edwasvidtnltavyrmSRRAVRGMMKARQGRIINITSVV-G--QMGNAGQANYAATKAGVEGfSRALAREIGSRGVTVNCVAPGFVETDM 187
                     4557777777788899999******************984.4..37889999999999999884556677899999999999999986653 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   4.8e-05      0.11       3      69 ..       6      73 ..       4      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.8e-05
                EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS.--S-BEBSSHHHHHHH-S CS
      DapB_N  3 vavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglg.klgvavtddleevlekad 69
                v+v+Gas  +Gk+++k  +++ ++ ++ a ++k+ e++g  ++e  g+g  l+v   +d+++++e+ d
  EGE24519.1  6 VLVTGASRGIGKAIAKRFTDEGHFVIGTATSKKGAEAIGDYLSESGGIGrILDVCNHEDIDKLFEEID 73
                789****99****************************************88999999******99977 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   5.4e-05      0.12      32      70 ..       3      41 ..       1      51 [. 0.86
   2 ?   -0.4   0.1      0.34   7.6e+02       4      36 ..     139     175 ..     136     182 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.4e-05
  LDcluster4 32 egavlltGgrtGvmeaaskGakeagGltvGilpasseke 70
                +++vl+tG+ +G+ +a +k   ++g +++G   +++  e
  EGE24519.1  3 RKIVLVTGASRGIGKAIAKRFTDEGHFVIGTATSKKGAE 41
                789***************************988765554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.34
  LDcluster4   4 igVmG.saete..akeeale.laeelGrliAkegavl 36 
                 +g mG +++ +  a++  +e   ++l+r+i ++g+++
  EGE24519.1 139 VGQMGnAGQANyaATKAGVEgFSRALAREIGSRGVTV 175
                 6778844444474333335558999999999999876 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.2e-05      0.14     109     198 ..      95     181 ..      87     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.2e-05
     DUF1776 109 etiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLG 198
                   ++ + was++ ++l + + ++ + +  + +   ++ +ii + +s++ ++ ++ +a  a +   ++ + ++L+re+++ ++ v ++  G
  EGE24519.1  95 MRMKDEDWASVIDTNLTAVYRMSRRAVRGMMK--ARQGRIINI-TSVVGQMGNAGQANYAATKAGVEGFSRALAREIGSRGVTVNCVAPG 181
                 5678899*************888888887776..377888777.59999*******************************9999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1950.42
//
Query:       EGE24520.1  [L=319]
Description: malonyl CoA-acyl carrier protein transacylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-28   98.7   0.8    5.5e-28   98.4   0.8    1.0  1  Acyl_transf_1  Acyl transferase domain
  ------ inclusion threshold ------
       0.31   11.2   1.1       0.81    9.8   0.1    2.1  2  TRPM_tetra     Tetramerisation domain of TRPM


Domain annotation for each model (and alignments):
>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.8   6.2e-32   5.5e-28       3     268 ..      15     287 ..      13     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 6.2e-32
                    EE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHH....HHHTT-TTSEEEE-TTHH CS
  Acyl_transf_1   3 vfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialael....lkskGvrpaavvGHSlGE 94 
                    vf+GqGsQ  GM  eL    kaf+ v    dea ++  gf +  v ++++   l+++q +qpaL    ia  +     l+++  +p  ++GHSlGE
     EGE24520.1  15 VFPGQGSQSVGMMDELD---KAFKSVRTTFDEASEA-LGFDLWSVTQDEN--CLNKTQYTQPALLTSSIAIWQIiepiLSAQSIKPMYLAGHSLGE 104
                    9***********99884...5799999999999888.9*****9977766..**************99998764222268999************* PP

                    HHHHHHCCSSSHHHHHHHHHHHHHHHHHHT..S-EECCEECS........HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CC CS
  Acyl_transf_1  95 lAaavvagalsseeallavvlrsrlmmqla..gpgdmaavel.......aeeeeklrcqddvvgavansprrvvisgsqealrelvervskegvga 181
                    ++a+v+ag l + +a++ v  r++ m+++    + +maa+         +  ee   ++  v  a  nsp++vv++g+   ++ +   v++ g  a
     EGE24520.1 105 YSALVAAGVLNLKDAVKLVHERGKFMTEAVqsIDTQMAAILGlddeqvvSLCEEVSTTTGTVDAANFNSPGQVVVAGTAVGVSGVLSAVEALGKKA 200
                    ***************************998667888988644455665333444445788999999***************************999 PP

                    EEECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSS CS
  Acyl_transf_1 182 lvenvnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispH 268
                       +v+v +h + ++++ dala+ l +    ++ ++ i+ + ++ +++++       + l+ pv+  +++ ++ e + + ++e  p 
     EGE24520.1 201 VPLKVSVPSHCALMNPASDALAKLLGETDFGEASIPVIQNRHAKIHTQTTQIKTALIEQLSMPVLWSKTMEKLSERGINLILECGPG 287
                    999**********************************************9999999999*****99999999988877777776665 PP

>> TRPM_tetra  Tetramerisation domain of TRPM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1     9e-05      0.81      18      42 ..     120     144 ..     113     155 .. 0.83
   2 ?   -1.5   0.1       0.3   2.7e+03      38      45 ..     311     318 ..     309     319 .] 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 9e-05
  TRPM_tetra  18 veevneKenlikaSLqsldfrLgkL 42 
                 v+ v+e+  ++++ +qs+d++++ +
  EGE24520.1 120 VKLVHERGKFMTEAVQSIDTQMAAI 144
                 6779******************876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.3
  TRPM_tetra  38 rLgkLedl 45 
                 rL+kLe+l
  EGE24520.1 311 RLEKLENL 318
                 89999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2489.32
//
Query:       EGE24521.1  [L=60]
Description: 50S ribosomal protein L32 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-19   69.9   0.2    1.8e-19   69.7   0.2    1.0  1  Ribosomal_L32p  Ribosomal L32p protein family


Domain annotation for each model (and alignments):
>> Ribosomal_L32p  Ribosomal L32p protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.2     1e-23   1.8e-19       1      55 [.       2      55 ..       2      56 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1e-23
                    S--SS---HHHHHHHGGGT------EEEETTTCCEECTTC-BTTTTBSSSBXSXX CS
  Ribosomal_L32p  1 AVPKrKtSksrrrkRrahwklkapnlvecpncgelklpHrvcpscGyYkgrevie 55
                    AV+++++S+srr++Rr+h+++  + l+ ++++ge +l+H+++++ G+Y+gr+ ++
      EGE24521.1  2 AVQQNRKSRSRRDMRRSHDHIAIAELSIDSTTGEKHLRHHATKD-GFYRGRQLFK 55
                    9*******************************************.*******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 499.73
//
Query:       EGE24522.1  [L=181]
Description: hypothetical protein EA1_07402 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-14   51.9   0.5    1.1e-13   51.3   0.5    1.3  1  YceD      Large ribosomal RNA subunit accumulation protein Yc


Domain annotation for each model (and alignments):
>> YceD  Large ribosomal RNA subunit accumulation protein YceD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.5   6.2e-18   1.1e-13       1     121 []      68     177 ..      68     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 6.2e-18
        YceD   1 ldgrvsatvtleCdrClepvelpldveftelfveeeeeaedeedeedeedeeeilaeedeiDlselireelllalPlkplckpdckgeklcsqcganln 99 
                 l+ +vs++v ++C+rCle++  ++++e+++ ++ ++       d  +    +e+  +  ++ +++l+++elll+lPl p + +dc+   + +     ln
  EGE24522.1  68 LNYQVSGEVFVTCQRCLESLGIDVSGEYRLAVLSSDGDIGRINDA-EYILVDELATKTAKLPIKDLLEDELLLTLPLSPKH-QDCDM--PVQM----LN 158
                 6899***************************98877666544332.33334444448888*********************.89999..5544....44 PP

        YceD 100 eeecdceeekedprfaaLkkLk 121
                 ee+   eee+e+p fa+L++Lk
  EGE24522.1 159 EEK--YEEEQENP-FASLAQLK 177
                 444..3457899*.*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1565.25
//
Query:       EGE24523.1  [L=301]
Description: hypothetical protein EA1_07407 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-57  192.2   0.5    4.8e-57  192.2   0.5    1.5  2  EpmC      Elongation factor P hydroxylase


Domain annotation for each model (and alignments):
>> EpmC  Elongation factor P hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.25   4.5e+03     123     151 ..      65      81 ..      34      95 .. 0.54
   2 !  192.2   0.5   2.7e-61   4.8e-57       1     150 [.     137     288 ..     137     300 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.25
        EpmC 123 kkvaeqvlaylekglpkraekflealaef 151
                 ++ +             + +k++++l + 
  EGE24523.1  65 QAST------------IQHAKYIQTLWQQ 81 
                 2222............2233333333333 PP

  == domain 2  score: 192.2 bits;  conditional E-value: 2.7e-61
        EpmC   1 lfnelfaeeyntrLvkgddePiYlPadeeeelhriifahgyfasalheiahWciaGeerrkleDygYWYePDGrdaeqqaefekvevkPqalewllala 99 
                 lfn+++++++ t+Lv+g++eP+Y+P+++ ++ +ri fahg+f+salhei+hWciaG++rrkl+D+gYWYe DGr++++q+ fe+ve+kPqa+e ll+la
  EGE24523.1 137 LFNHMYFDQIPTVLVRGESEPEYFPSEH-NAPARIEFAHGFFQSALHEISHWCIAGQARRKLNDFGYWYESDGRNEQTQRLFEQVEIKPQAIEALLTLA 234
                 7*************************55.6679****************************************************************** PP

        EpmC 100 aglkfkvsvDnleg.eeadrkafkkkvaeqvlaylek..glpkraekflealae 150
                 +g  f vs Dnl++  + ++++f++ v +q++ yl++  +lp++a+ +l ++ +
  EGE24523.1 235 CGRYFYVSQDNLNAnFDISNSTFAQDVFNQAKFYLSNpsTLPTDAQLLLWVILT 288
                 *************9899******************975479*999998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2274.13
//
Query:       EGE24524.1  [L=188]
Description: hypothetical protein EA1_07412 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-13   50.0   0.0    2.9e-13   49.7   0.0    1.1  1  Sua5_yciO_yrdC  Telomere recombination


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.6e-17   2.9e-13       2     170 ..      22     186 ..      21     188 .] 0.85

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.6e-17
                     HHHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-.TC--HHHHHHHHCT-SSSCEEEEE..E-TS-HHHHT CS
  Sua5_yciO_yrdC   2 alrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklae.seveeealkllerfwPGpitlllkrskeklpkevap 95 
                     +l++++++++p  ++Y La++++ +++ ++  +  + +    + ++++ +++++++a+ s++ ++ lk   +++     +ll+ +k++ +k v++
      EGE24524.1  22 LLKNDQLIIYPDPSGYRLAVSLDAKQSLAQALRFGQYE--PKFCLICRHISEISTFAKiSDFAHRNLK---NTLNKNTHFLLNPTKSAPKKFVNS 111
                     799*******************9999998887777766..78***************96555444444...4444588888887777677799** PP

                     TTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSH.HHHHHHC-TTSECB-SS---SSS---EEEETTS CS
  Sua5_yciO_yrdC  96 glktvGvrlPdtplarlLlealgeplvaTSanlsgepsitda.eeveeelgeivdlildggeiavgvdstVvdlte 170
                     + k++   l++tp+++ L+eal++p ++    l+ge++++d   e+e  +++ vd +ld+ge +  ++s Vv+l++
      EGE24524.1 112 SDKNICASLAHTPIVLSLIEALNAPFISMPIYLNGEKVTYDStYELEAMMENLVDGFLDAGELQ-DQPSPVVSLID 186
                     *************************999999999*98887761688999************775.5******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1486.41
//
Query:       EGE24525.1  [L=119]
Description: 50S ribosomal protein L17 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-34  118.4   0.0    2.2e-34  118.2   0.0    1.1  1  Ribosomal_L17  Ribosomal protein L17


Domain annotation for each model (and alignments):
>> Ribosomal_L17  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0   1.2e-38   2.2e-34       1      94 []      20     116 ..      20     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1.2e-38
                    HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHS-...HHHHHHHTHHHHTSS--S--EEEEEEEE-TTTH-EEEEEEE CS
  Ribosomal_L17   1 LlrnlvtsLleherIetTlakAkelrklaeklitlakkgelaarrkalayla...lvkkLfeelapryadrngGYtRilklgprrgDaaemailel 93 
                    +++n+++sL+ehe I+tTl+kAkelr++ae litlak++++a+rr a++ ++   +v kLf+el pry++r+gGY Ri+k+g r gD+a+ma++el
     EGE24525.1  20 MFQNMTNSLFEHELIKTTLPKAKELRRVAEPLITLAKEDSVANRRLAFSRMRnkdMVGKLFSELGPRYQTRPGGYLRIIKCGFRDGDNAPMAYVEL 115
                    899************************************************55568**************************************** PP

                    - CS
  Ribosomal_L17  94 V 94 
                    V
     EGE24525.1 116 V 116
                    8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 987.57
//
Query:       EGE24526.1  [L=334]
Description: DNA-directed RNA polymerase subunit alpha [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-25   87.5   0.4    7.9e-25   86.4   0.4    1.6  1  RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C termin
    1.6e-23   81.9   0.0    3.2e-23   80.9   0.0    1.5  2  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain
    1.8e-21   76.6   0.0    4.9e-21   75.2   0.0    1.7  2  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
    0.00015   21.5   0.1       0.41   10.4   0.1    2.6  2  RNA_pol_L_2    RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.4   1.8e-28   7.9e-25       3      66 ..     242     305 ..     240     306 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 1.8e-28
                    ..XXXXXXX--BHHHHT--HHHHHHHHHTT--BHHHHHHS-HHHHTTSSS-SSHHHHHHHHHHH CS
  RNA_pol_A_CTD   3 eeeeelkklsisIeeLeLSvRslNcLkragiktvgeLvklseeeLlkikNlGkKSleEIkekLe 66 
                    e+ee  + l +++++LeL+vRs NcLk+++i ++g+Lv++se eLlk++NlGkKSl+EIk+ L+
     EGE24526.1 242 EKEEIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLVQRSETELLKTPNLGKKSLTEIKDVLA 305
                    56778899*****************************************************996 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   7.1e-27   3.2e-23       1      68 [.      28     224 ..      28     225 .. 0.93
   2 ?   -3.6   0.0       1.8   8.1e+03      40      56 ..     255     271 ..     248     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 7.1e-27
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
   RNA_pol_L   1 efllrgvdhtlgNaLRrillsevpgvaiea..................................................................... 30 
                 e+l+rg++htlgNaLRrills++ g+a+++                                                                     
  EGE24526.1  28 EPLERGFGHTLGNALRRILLSSLSGAAVVEaeiegvdheystleglqedvldlllnlkslaiilhdqneayltldkqgagvvtaadlelphnveianpd 126
                 79************************************************************************************9999999999999 PP

                 .................................................xxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  31 .................................................pvvkvn...........tdkdklilevetdgslkPeealkeAlkiLkek 68 
                                                                  p+++v+           td dkli+e et+g+++Peea+++A++iL+++
  EGE24526.1 127 lvlgtlserghlkmrlhvvtgrgyepanqrredanskiigrlkldasfsPIIRVAydvenarveqrTDLDKLIIELETNGTIDPEEAIRKAATILQQQ 224
                 999999999999999999999999999999999999999999998888888777788888888899*****************************997 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.8
                 xxxxxxxxxxxxxxxxx RF
   RNA_pol_L  40 dklilevetdgslkPee 56 
                 d l l+v +   lk+e+
  EGE24526.1 255 DDLELTVRSANCLKAEN 271
                 67888888888888877 PP

>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   1.1e-24   4.9e-21      13     110 ..      61     154 ..      55     175 .. 0.91
   2 ?   -2.1   0.0       1.1   4.8e+03      80      95 ..     194     209 ..     160     220 .. 0.68

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 1.1e-24
                    HHHHCHHHCSTCBSSCHHHHHHHHCTT-.ETSSSSTTCSEEEEEEEEESSECEEGGGCBESSSSCEESSTTSEEEEEETT-EEEEEEEEEEESSEE CS
  RNA_pol_A_bac  13 EvvaHrlgliplvsedvleillnlkelv.eeeeegeeeksvelkLnvkgpgevtagdlkledadveivnpdilIakLrkgqeleleakvkkGiGke 107
                    E v H+++++++ +edvl++llnlk l+ +      ++++  l+L+++g g vta+dl+l +++vei+npd+++ +L++  +l+++++v++G+G+e
     EGE24526.1  61 EGVDHEYSTLEGLQEDVLDLLLNLKSLAiI----LHDQNEAYLTLDKQGAGVVTAADLEL-PHNVEIANPDLVLGTLSERGHLKMRLHVVTGRGYE 151
                    5599***********************953....45555569******************.*********************************** PP

                    CTT CS
  RNA_pol_A_bac 108 hak 110
                    +a+
     EGE24526.1 152 PAN 154
                    *97 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.1
                    STTSEEEEEETT-EEE CS
  RNA_pol_A_bac  80 npdilIakLrkgqele 95 
                    + d lI++L+ +  ++
     EGE24526.1 194 DLDKLIIELETNGTID 209
                    4466777777776666 PP

>> RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00042       1.9      10      23 ..      35      48 ..      32      54 .. 0.88
   2 !   10.4   0.1   9.3e-05      0.41      40      71 ..     196     227 ..     180     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00042
                 -HHHHHHHHHHHTT CS
  RNA_pol_L_2 10 DhTLgnlLrhlllk 23
                  hTLgn+Lr +ll+
   EGE24526.1 35 GHTLGNALRRILLS 48
                 6**********986 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.3e-05
                  SEEEEEEEESTSS-HHHHHHHHHHHHHHHHHH CS
  RNA_pol_L_2  40 pkmnlriqtkssnnpleaLkkalkdlldicde 71 
                  +k+ +  +t+++++p ea++ka++ l++++  
   EGE24526.1 196 DKLIIELETNGTIDPEEAIRKAATILQQQIAI 227
                  688999********************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2372.57
//
Query:       EGE24527.1  [L=213]
Description: 30S ribosomal protein S4 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-29  101.8   3.5    4.9e-29  101.1   3.5    1.3  1  Ribosomal_S4   Ribosomal protein S4/S9 N-terminal domain
    1.6e-10   40.5   1.5    1.7e-08   34.0   0.2    2.4  2  S4             S4 domain
  ------ inclusion threshold ------
      0.018   15.2   0.2       0.67   10.1   0.1    2.3  2  MTA_R1         MTA R1 domain
      0.031   14.0   0.2      0.038   13.7   0.2    1.1  1  DUF5577        Family of unknown function (DUF5577)
       0.14   12.1   0.0        0.3   11.1   0.0    1.5  1  Peptidase_S24  Peptidase S24-like


Domain annotation for each model (and alignments):
>> Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   3.5   1.4e-32   4.9e-29       1      83 []       3      96 ..       3      96 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 1.4e-32
                  TT-S-CHHHHCHCTS-STSSS...........S-S-SSTTTTS-----CHCHHHHHHHHHHHHHT-SHHHHHHHHHHHHHCCSHHHHHHHHHHH CS
  Ribosomal_S4  1 rykgpkckllRrvgfklflkg...........reyppGqhgkrrkklseYgkqlrekqklkrrYgllekqfrryfkearrirGktgenLlqlLE 83
                  ry+gpk kl+Rr+g++l lk+               pGqhg++++k+seY++qlrekqk+kr+Yg+le+qf +y+kea+r rG tgenLl  LE
    EGE24527.1  3 RYIGPKLKLSRREGTDLQLKSgvkpydvktkkAGRVPGQHGNSQNKTSEYASQLREKQKVKRMYGVLERQFSNYYKEAARERGATGENLLVTLE 96
                  8***************************99988899******************************************************9998 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.2   4.8e-12   1.7e-08       1      28 [.      97     124 ..      97     126 .. 0.95
   2 !    5.4   0.1    0.0043        15      34      48 .]     136     150 ..     134     150 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 4.8e-12
                 EEHHHHHHHTTSSSSHHHHHHHHHTTTE CS
          S4   1 rRLdkvlarlglassrreArqlIehGrV 28 
                 rRLd+v++r+g++ +r eArql++h+ +
  EGE24527.1  97 RRLDNVVYRMGFGATRAEARQLVSHRAI 124
                 8************************987 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0043
                 EE--TT-EE-TTCEE CS
          S4  34 vvkdpsyrVkpgDvi 48 
                 +v++ps +V+ gDvi
  EGE24527.1 136 RVNIPSIQVQDGDVI 150
                 8************98 PP

>> MTA_R1  MTA R1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.038   1.3e+02      28      59 ..      31      63 ..      28      76 .. 0.82
   2 ?   10.1   0.1   0.00019      0.67      19      49 ..     115     146 ..     109     171 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.038
      MTA_R1 28 rlrhaARrPfvpiNiaaikaecaarlaeksa.k 59
                ++++a R P +  N +    e+a++l ek+  k
  EGE24527.1 31 KTKKAGRVPGQHGNSQNKTSEYASQLREKQKvK 63
                789999*****99****99*******9998433 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00019
      MTA_R1  19 aRrlC.rdllrlrhaARrPfvpiNiaaikaec 49 
                 aR+l  ++++ l++a R  fv +Ni +i+ + 
  EGE24527.1 115 ARQLVsHRAIMLKKAGRDEFVRVNIPSIQVQD 146
                 899865899******************98654 PP

>> DUF5577  Family of unknown function (DUF5577)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   1.1e-05     0.038     159     262 ..      58     164 ..      20     176 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
     DUF5577 159 eegsvlqyaGvlkklpksqkkesakpaa.......tttlrrlggkfkltttdsptsskpnglaaakvsvlkrlgklaaskpskvalataeaqdnrvtst 250
                 e+  v +  Gvl +  ++  ke+a++ +        t  rrl +          t  ++  l++ +  +lk++g+    + ++v++++ + qd+ v + 
  EGE24527.1  58 EKQKVKRMYGVLERQFSNYYKEAARERGatgenllVTLERRLDNVVYRMGF-GATRAEARQLVSHRAIMLKKAGRD---EFVRVNIPSIQVQDGDVIAV 152
                 45567778899*999999998888877767777755555677665555333.344555555777888889999999...55699*************** PP

     DUF5577 251 kdkaqerlklai 262
                 ++k++e+l++  
  EGE24527.1 153 HEKSKEQLRIKN 164
                 *******99864 PP

>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.3e-05       0.3      15      52 ..     133     171 ..     123     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.3e-05
                    XEEEEE.CTS---TTSEEEEEETTCE-EEEEEEEEETTE CS
  Peptidase_S24  15 dlilVd.kfsepkrGdivvfrlpgeeeayiKrviglpgd 52 
                    +++ V+ ++ ++++Gd+++++ + +e++ iK  ++l  +
     EGE24527.1 133 EFVRVNiPSIQVQDGDVIAVHEKSKEQLRIKNAVELATQ 171
                    55666656669********************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1587.51
//
Query:       EGE24528.1  [L=130]
Description: 30S ribosomal protein S11 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-48  162.5   0.7    4.4e-48  162.2   0.7    1.1  1  Ribosomal_S11  Ribosomal protein S11
  ------ inclusion threshold ------
      0.097   13.1   0.0       0.32   11.5   0.0    1.9  2  RuvA_C         RuvA, C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.2   0.7   4.9e-52   4.4e-48       1     110 []      19     129 ..      19     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 162.2 bits;  conditional E-value: 4.9e-52
  Ribosomal_S11   1 GvahiqasfnntiititdlkGaevlvksaGglgvkasrkssPyaaqlaaekaaekvld.kGikavevkvkgpGpGreaalralaraGlkigriedv 95 
                    G+ahi+asfnnti+titd++G++++++++Gg g+++srks+P+aaq+aae a +++ + +G+k+v+v vkgpGpGre+a+ral + G ki+ i dv
     EGE24528.1  19 GIAHIHASFNNTIVTITDRQGNALAWATSGGQGFRGSRKSTPFAAQVAAEVAGKTAQEtYGVKNVDVLVKGPGPGRESAVRALGALGYKINSISDV 114
                    9***************************************************99998746************************************ PP

  Ribosomal_S11  96 tPiPhdgirrpkkrr 110
                    tPiPh+g+r+pkkrr
     EGE24528.1 115 TPIPHNGCRPPKKRR 129
                    **************8 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.36   3.2e+03      20      32 ..      62      73 ..      61      88 .. 0.61
   2 ?   11.5   0.0   3.6e-05      0.32       3      21 ..      94     112 ..      92     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.36
                HHHHHHHHHC-TT CS
      RuvA_C 20 aekAvakvlanpg 32
                a+++ a+v+  + 
  EGE24528.1 62 AAQVAAEVAG-KT 73
                5677777763.32 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHCTS-HHHHH CS
      RuvA_C   3 ledaveALlaLGYkekeae 21 
                 +e av AL aLGYk + + 
  EGE24528.1  94 RESAVRALGALGYKINSIS 112
                 899**********977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1042.99
//
Query:       EGE24529.1  [L=118]
Description: 30S ribosomal protein S13 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-33  115.4   4.8    8.8e-32  110.2   4.8    2.0  1  Ribosomal_S13    Ribosomal protein S13/S18
  ------ inclusion threshold ------
      0.038   13.8   0.1       0.08   12.8   0.1    1.8  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
      0.066   12.0   0.0      0.072   11.8   0.0    1.1  1  FbpA             Fibronectin-binding protein A N-terminus (Fb


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   4.8   1.5e-35   8.8e-32       1     128 []       3     108 ..       3     108 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 1.5e-35
  Ribosomal_S13   1 RilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeivenkaqykipnwinrqkdikdGkdshvvendlrrklred 96 
                    Ri+g++i+++k+ +i+lt+i GiGr++ak+il++++++e+++ig l++ +++ ++ +v+n                      ++ve+dlrr+++++
     EGE24529.1   3 RIAGVNIPDNKHAVISLTYIFGIGRTTAKQILAAVGIEETTKIGSLDDSQLDAVRAEVAN----------------------YTVEGDLRREVSMN 76 
                    9***********************************************************......................99************ PP

  Ribosomal_S13  97 ieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                    i+Rl ++++yrGlRH+rGl+v GQrTkt++Rt
     EGE24529.1  77 IKRLVDLGCYRGLRHRRGLPVNGQRTKTNART 108
                    *******************************8 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.3e-05      0.08       3      24 ..      19      41 ..      18      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
  DNA_pol_lambd_f  3 FtkvyGVGpktAkkwyak.Girt 24
                     +t ++G+G++tAk+  a+ Gi  
       EGE24529.1 19 LTYIFGIGRTTAKQILAAvGIEE 41
                     678***********999888865 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.2e-05     0.072     193     238 ..      19      63 ..       6      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.2e-05
                 HHHHBTTXXHHHHHHHHTTXSSSH...............HHHHHHH CS
        FbpA 193 LvkafqGlspllaeelleragldketsakelseedlerlyealqel 238
                 L   f G+++++a+++l+ +g++++t++ +l++++l+++++++ ++
  EGE24529.1  19 LTYIF-GIGRTTAKQILAAVGIEETTKIGSLDDSQLDAVRAEVANY 63 
                 55556.********************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 967.49
//
Query:       EGE24530.1  [L=413]
Description: preprotein translocase subunit SecY [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.2e-107  357.9  26.4   5.1e-107  357.6  26.4    1.1  1  SecY            SecY translocase
  ------ inclusion threshold ------
       0.21   11.6   6.6       0.22   11.5   0.3    2.6  2  DUF3043         Protein of unknown function (DUF3043)
        2.4    8.0   3.9       0.95    9.3   0.1    2.5  2  COX2-transmemb  Cytochrome C oxidase subunit II, transmembran


Domain annotation for each model (and alignments):
>> SecY  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.6  26.4  8.6e-111  5.1e-107       1     305 [.      54     391 ..      54     392 .. 0.92

  Alignments for each domain:
  == domain 1  score: 357.6 bits;  conditional E-value: 8.6e-111
                 BTTSSTCHHHHHHHHHHHHHHHHSSSSSSTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..........HH.HHHHHHHHHHHHHHHHHHHHH CS
        SecY   1 sifaLGImPyitasIilqLltvvipkleelkkegeegrkkinqitryltvvlalvqalgialslg..........lalllivlqltagtvllmwLgEqi 89 
                 si+aLGImPyi+asI++q+++++ip+le+lkkege+gr+++n++tr  t++la+vqa+g++++l            +++ +v++l+ag+++lmwLgEqi
  EGE24530.1  54 SIMALGIMPYISASIVVQMMSAIIPSLEALKKEGESGRRTLNKYTRQGTLALAFVQAVGMSTGLIaggltlttglSFYIPAVTSLVAGSMFLMWLGEQI 152
                 8*******************999************************************885544779******97799******************** PP

                 HHHSSTTHHHHHHHHHHHHHHCCHSS-HHHHSS..THHHHHHHHHHHHHHHHHCHHHHBEEEECBBBSTT.........S.S-EEEEETTCCCSCHHHH CS
        SecY  90 tekGiGnGisllifagivarlpkalsglielalegilallllllvtllvillvvyveeaerripvqyakr...grk..ggqssylPlklnyagviPiIf 183
                 te+G+GnGis+li+a+i+a+ p+++s+++++   +++ +ll++++ + vi+++v++e+a+rr+pv+ya++   grk  ++q+s+lPlk+n+agviP If
  EGE24530.1 153 TERGVGNGISMLILASIIASAPGMISQAFSQN-LNLIVMLLFVVLGITVIAAIVFIERAQRRVPVNYAQKqqlGRKiyAQQQSHLPLKINMAGVIPAIF 250
                 ***************************66653.488999*****************************55599999*9999****************** PP

                 HHHHHHHHHCCCCS................TCCCS.....THHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHCCHHTBSSSCTTTTCHHHHHHHHHHHH CS
        SecY 184 assllalpstiaqfl...............lalls.....psvlyvvlyvlliifFayfyteitfnpkevaenlkksggfipgirpgketakyLekvls 262
                 assll+lp+++ q++               +   +     +++ly++l+ ++iifF+yfyt+++fnpkevaenlk+sg++ipgirpg++t++yL+ vl+
  EGE24530.1 251 ASSLLLLPASLGQWTtvsenptltqeiiqnI---TlvlqpGQPLYLLLFGVMIIFFCYFYTALMFNPKEVAENLKRSGAYIPGIRPGQQTKRYLDFVLN 346
                 ***********99999999988886555441...1555678899******************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHTT..S.T.T.TTHHHHHHHHHHHHHH CS
        SecY 263 ritliGalflaliavlpdllga..sli.gafggtslLivVgvalet 305
                 r+t+iGa+++++i+++p+++++  + + + +gg slLi+V v +++
  EGE24530.1 347 RLTFIGAMYMTIICLMPMIIQSvfN-VpIPLGGASLLIMVVVLMDF 391
                 **********************543.34689************997 PP

>> DUF3043  Protein of unknown function (DUF3043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   3.8e-05      0.22      82     151 ..     165     231 ..     154     238 .. 0.67
   2 ?    2.0   1.4      0.03   1.8e+02      70     123 ..     342     392 ..     331     405 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
     DUF3043  82 flplalvvlvlllvslvkvpevqavvsllllvllllvvidgillgrkvkkkvrekFpetesekglglYav 151
                 +l  +++    +++  ++ ++  +++ +ll+v+l ++vi +i++  +++++v   +  ++++ g  +Ya 
  EGE24530.1 165 ILASIIASAPGMIS--QAFSQNLNLIVMLLFVVLGITVIAAIVFIERAQRRVPVNYA-QKQQLGRKIYAQ 231
                 22223333333444..3334444566667777888999*******************.777777777775 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.03
     DUF3043  70 DlVDsrrnlgelflplalvvlvlllvslvkvpevqavvsllllvllllvvidgi 123
                 D+V  r ++ + + ++++ ++ +++ s+ +vp     +  + l+++++v++d i
  EGE24530.1 342 DFVLNRLTFIGAMYMTIICLMPMIIQSVFNVPI---PLGGASLLIMVVVLMDFI 392
                 677777777776666666666654444444444...334444444455544443 PP

>> COX2-transmemb  Cytochrome C oxidase subunit II, transmembrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00016      0.95      23      38 .]       1      16 [.       1      16 [. 0.96
   2 ?   -2.9   0.7         1   6.2e+03      23      38 .]     387     402 ..     381     402 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00016
                    HHHHHHHHHHHHHTSG CS
  COX2-transmemb 23 mLFvFiALiAYtLAtH 38
                    mLF F ALi Y L  H
      EGE24530.1  1 MLFLFGALIVYRLGSH 16
                    9************988 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1
                     HHHHHHHHHHHHHTSG CS
  COX2-transmemb  23 mLFvFiALiAYtLAtH 38 
                     +L  FiA +   L tH
      EGE24530.1 387 VLMDFIAQLQAHLMTH 402
                     3455777666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1150  (0.0641419); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2981.81
//
Query:       EGE24531.1  [L=146]
Description: 50S ribosomal protein L15 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-29  103.0   1.4    2.3e-29  102.7   1.4    1.1  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   1.4   1.3e-33   2.3e-29       2     127 ..      30     145 ..      29     146 .] 0.92

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.3e-33
                     GGGTSSTTTTTTTTT-S--......S--.........---GGG..---EEEEHHHHHHTTTTGTTS------EEEGGGTTTTSSS....SE.EEE CS
  Ribosomal_L27A   2 GktgGrGhkGqkkrsgvkkkpgfeGGqmplyrrlpkrGfknskfkkeykvvnlkdLdelideerleladeaeeidleelaeaglikkkdgv.Kvl 95 
                     GktgGrG kGq +rsg++  +gfeGGqmp+yrrlpk+Gf++++ +  +++v l++L+      ++ ++   ++++l++l++a++i+++ +  +++
      EGE24531.1  30 GKTGGRGVKGQTSRSGSSIPAGFEGGQMPIYRRLPKFGFTSKM-AMTTAEVRLSELN------KI-DG---DTVSLDTLKAANIIRGDMKRaRII 113
                     9***************99999******************9644.78999********......44.23...78**************76666*** PP

                     --S---.--EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  96 gkgeltkklkvkaskfSkkAkekIeaaGGkve 127
                      +ge++++l++k  k++k Ak++IeaaGG+ve
      EGE24531.1 114 LSGEVSRALTFKGVKVTKGAKQAIEAAGGSVE 145
                     ******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1193.68
//
Query:       EGE24532.1  [L=59]
Description: 50S ribosomal protein L30 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-17   61.5   0.1    5.9e-17   61.3   0.1    1.0  1  Ribosomal_L30  Ribosomal protein L30p/L7e


Domain annotation for each model (and alignments):
>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.1   3.3e-21   5.9e-17       2      51 .]       5      54 ..       4      54 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 3.3e-21
                   EEEE-S-STTS-HHHHHHHHHTT-SSTTEEEE--SSHHHHHHHHHCCCGE CS
  Ribosomal_L30  2 fVtrirsiigvppkvrktLqlLgLrkingtvvklntpsirGmLkkVkhlV 51
                   +Vt+++s +++   ++++L++LgLr+i++tv++++tps+rGm++ V ++V
     EGE24532.1  5 KVTQVKSSAHRLASHKACLKGLGLRRIGHTVEVEDTPSTRGMVNRVHYMV 54
                   9**********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 463.86
//
Query:       EGE24533.1  [L=165]
Description: 30S ribosomal protein S5 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-30  103.5   0.9      5e-30  102.8   0.9    1.4  1  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
    1.3e-28   98.8   3.3    1.3e-28   98.8   3.3    2.0  2  Ribosomal_S5    Ribosomal protein S5, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.9   5.5e-34     5e-30       2      72 .]      86     156 ..      85     156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 5.5e-34
                     EEETTEEEEEEE--TT--EES-HHHHHHHHHHT--SEE---BS-SSHHHHHHHHHHHHHHTTTT-.-GGGG CS
  Ribosomal_S5_C   2 gkfgavkvllkpaprGtGiiaggavravlelaGikDvlakslgsrnpinvvkAtfeALkklrspeevaalR 72 
                     +++ga+kv+++pa++GtG+iagga+ravle+aG+++vlak++gs+n  nvv+Atf++L+ + spe+vaa+R
      EGE24533.1  86 ARHGASKVYMQPASEGTGVIAGGAMRAVLEVAGVQNVLAKCYGSTNAANVVQATFKGLRDMTSPEQVAAKR 156
                     689******************************************************************98 PP

>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   3.3   1.4e-32   1.3e-28       1      64 [.      10      73 ..      10      74 .. 0.97
   2 ?   -1.0   0.1      0.19   1.7e+03      38      53 ..     127     142 ..     111     145 .. 0.62

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 1.4e-32
                  XEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEE- CS
  Ribosomal_S5  1 lkekvlkikrvqkvtkgGrrtsfsalvvvGdgnGlvGlGvgkakevatAirkAiekAkknlvpv 64
                  l ek+++++rv+kv+kgGr++sf+al+vvGdgnG+vG+G gka+ev+ Ai+kA e+Ak+n++ v
    EGE24533.1 10 LVEKLVAVDRVAKVVKGGRIFSFTALTVVGDGNGRVGFGRGKAREVPAAIQKALEAAKRNMITV 73
                  569***********************************************************99 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.19
                   EEEEEESSHHHHHHHH CS
  Ribosomal_S5  38 lGvgkakevatAirkA 53 
                   +G   a++v +A  k+
    EGE24533.1 127 YGSTNAANVVQATFKG 142
                   5556666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1236.49
//
Query:       EGE24534.1  [L=116]
Description: 50S ribosomal protein L18 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-41  141.4   3.1    1.7e-41  141.2   3.1    1.0  1  Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. a


Domain annotation for each model (and alignments):
>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   3.1   9.4e-46   1.7e-41       2     116 .]       3     116 .]       2     116 .] 0.98

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 9.4e-46
                     -CCHHHCHHHHHHTTT--..TTSSS-EEEEEE-SS-EEEEEE-TTT--EEEEECS-SCCCTS-SSSCHHHHHHHHHHHHHHHCHHCHTC-EE--T CS
  Ribosomal_L18p   2 kkkearkrRhkRirkkls..gtaerprlvvfrsnrhiyaQviddvkgktlasastlekelklkstknkeaakkvgeliAerakekgiekvvfDrg 94 
                     +kk+ar rR+k+ r +++  g++   rl+v+r++rhiyaQ+i  + g ++a+astl+++l+   t+n eaak+vg+liAerak++gi+kv+fDr+
      EGE24534.1   3 DKKSARLRRAKKTRAHIRhlGVD---RLTVTRTPRHIYAQIISPTGGVVVAQASTLDATLRSGATGNVEAAKAVGALIAERAKAAGITKVAFDRS 94 
                     799**************977777...********************************************************************* PP

                     TSSS-CHHHHHHHHHHCTSSB- CS
  Ribosomal_L18p  95 gykYhGrvaalAdaaReaGlkf 116
                     g+kYhGrv+alAdaaRe+Gl+f
      EGE24534.1  95 GFKYHGRVKALADAARENGLEF 116
                     ********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 873.62
//
Query:       EGE24535.1  [L=177]
Description: 50S ribosomal protein L6 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-38  130.0   0.3    1.5e-19   70.4   0.0    2.1  2  Ribosomal_L6  Ribosomal protein L6


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.2   6.5e-20   1.2e-15       2      76 .]      12      82 ..      11      82 .. 0.97
   2 !   70.4   0.0   8.5e-24   1.5e-19       1      75 [.      90     164 ..      90     165 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 6.5e-20
                  STTEEEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHHHHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  2 PvgvrvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekvAligtvrslinnmikGVteg 76
                  P+g++v++++ + v v+G++g+l+++++e v+++  +e++ v+  +v +++++++   gtvr+l nnm+kGV+eg
    EGE24535.1 12 PEGTNVTLND-RQVEVKGKNGTLSLSLHELVELK--QEDGIVVLSPVVDTKEAWM-HTGTVRALLNNMVKGVSEG 82
                  9********7.*******************9999..*******************.*****************98 PP

  == domain 2  score: 70.4 bits;  conditional E-value: 8.5e-24
                   CSTTEEEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHHHT CS
  Ribosomal_L6   1 iPvgvrvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGVte 75 
                   i+vg+r+++ g++++l+lG+++++++++pegvt e +    ++t+i ++ +dk+k     A+i+++r+++++++kGV++
    EGE24535.1  90 IGVGYRAQVAGNKVNLSLGFSHPIEYTLPEGVTAESP----SQTEILLKSSDKQKLgqaaAKIRSFRPPEPYKGKGVRY 164
                   79*********************************99....************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1433.35
//
Query:       EGE24536.1  [L=132]
Description: 30S ribosomal protein S8 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-44  150.7   0.1    2.1e-44  150.5   0.1    1.0  1  Ribosomal_S8  Ribosomal protein S8


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.1   1.2e-48   2.1e-44       1     126 [.       5     131 ..       5     132 .] 0.96

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 1.2e-48
                   -HHHHHHHHHHHHHHTT-SEEEEE--HHHHHHHHHHHHCTSEEEEEEE.CCC.CCCEEEEE-BSSS-SBSSSEEEE-SBTTC--EE-CCC---CGGG CS
  Ribosomal_S8   1 DpiadmltrirNaekakkeevevpasklkeeilkvLkeeGyikdfeve.eek.kkkikielkynkkkksvikklkrvskpgrrvYakvkelpkvlng 95 
                   Dp+admltrirNa++++k +v++paskl+++i+++L  eGy+++ ev+  e+ kk++ ielky + +k+vi++lkr+s+pg+r Y +++elp+v++g
    EGE24536.1   5 DPVADMLTRIRNAQARNKPSVQMPASKLRKSIADLLVAEGYLTSAEVSeAENgKKVLDIELKYYQ-GKGVIEQLKRYSRPGLRQYRGKDELPSVQKG 100
                   9**********************************************854444677*********.8****************************** PP

                   TSEEEEEETTEEEEHHHHHHCT--EEEEEEE CS
  Ribosomal_S8  96 lGiaivsTskGvmtdkeArkkkvGGevlayv 126
                   lG+ai+sTs+G+m+d+ Ar++++GGe++a v
    EGE24536.1 101 LGVAIISTSRGIMSDRAAREAGIGGEIIALV 131
                   ****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1083.53
//
Query:       EGE24537.1  [L=101]
Description: 30S ribosomal protein S14 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-25   88.1   0.4    3.4e-25   87.6   0.4    1.3  1  Ribosomal_S14  Ribosomal protein S14p/S29e
  ------ inclusion threshold ------
      0.018   14.8   1.7      0.023   14.5   1.7    1.1  1  SpoIIIAH       SpoIIIAH-like protein


Domain annotation for each model (and alignments):
>> Ribosomal_S14  Ribosomal protein S14p/S29e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.4   3.8e-29   3.4e-25       2      54 .]      48     100 ..      47     100 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 3.8e-29
                    ------SS..CTTT---SSS--SSSEE-GGG-EHHHHHHHTTT...TT-EE-- CS
  Ribosomal_S14   2 laklprnssptrirnrCrvtGrprGvirkfgLsRicfRelAlkgelpGvkKaS 54 
                    l++lprn+sp+r+rnrC vtGrp+G++rkfgLsR+++R  +++g++pGv+KaS
     EGE24537.1  48 LQALPRNASPVRLRNRCGVTGRPHGYFRKFGLSRNMLRLHVMQGDVPGVRKAS 100
                    89**************************************************9 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.7   2.6e-06     0.023     107     147 ..      10      53 ..       2      57 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-06
                 HHHHHH...HHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHH CS
    SpoIIIAH 107 kleReq...krsknketLqeiinnenlseeekqeAqqqllelte 147
                  l+Re+   k++++  +L++ii+++n+seee+ +A+  l++l  
  EGE24537.1  10 ELKREKtvaKYAEKRAQLKAIISDTNASEEERLDAMLALQALPR 53 
                 56677622257778889*******************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 766.42
//
Query:       EGE24538.1  [L=178]
Description: 50S ribosomal protein L5 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-41  139.1   0.0    6.4e-41  138.4   0.0    1.3  1  Ribosomal_L5_C  ribosomal L5P family C-terminus
    6.7e-29  100.0   0.8    1.1e-28   99.3   0.8    1.4  1  Ribosomal_L5    Ribosomal protein L5


Domain annotation for each model (and alignments):
>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   0.0   7.2e-45   6.4e-41       1      94 []      84     177 ..      84     177 .. 1.00

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 7.2e-45
  Ribosomal_L5_C   1 piGvkvtLrgekmyefldkllevvlprlrdFkGiskssfdgrGnvsfGikeqiifpeieydkdkgifGmditivttaktdeearallkelgipf 94 
                     piG+kvtLrge+myefld+l+ +++pr+rdF+G+s+++fdgrGn+s+Gikeqi+fpe+++dk+++i+G+d+ti+tta +d++ rallk++g+pf
      EGE24538.1  84 PIGCKVTLRGEQMYEFLDRLVAIAIPRIRDFRGFSAKAFDGRGNYSLGIKEQIVFPEVDFDKIDRIRGLDVTITTTAANDDQGRALLKAFGFPF 177
                     8********************************************************************************************9 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.8   1.2e-32   1.1e-28       1      57 []      24      80 ..      24      80 .. 1.00

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 1.2e-32
                  SCTTS-EEEEEEEEEE-SSSSSCHHHHHCCHHHHCCCHSS--EECC--TTCTTTCSC CS
  Ribosomal_L5  1 NvMqvPrleKivinmgvGeagedkkllekaakeLaeItGQkPvvtkakksianFkiR 57
                  NvMqvP+++Ki++nmgvG a++dkklle+a +++++I+GQkPvvtka+ks+a+FkiR
    EGE24538.1 24 NVMQVPKITKITLNMGVGGAAQDKKLLEGALADMTAIAGQKPVVTKARKSVAGFKIR 80
                  9*******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1367.62
//
Query:       EGE24539.1  [L=105]
Description: 50S ribosomal protein L24 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-23   83.2   0.8    2.4e-23   82.3   0.8    1.5  1  ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L
    8.2e-07   28.8   5.1    2.5e-06   27.2   5.1    1.8  1  KOW            KOW motif
  ------ inclusion threshold ------
      0.036   13.5   2.4       0.06   12.8   2.4    1.3  1  ProQ_C         ProQ C-terminal domain
      0.079   12.5   0.1       0.14   11.6   0.1    1.3  1  DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase


Domain annotation for each model (and alignments):
>> ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.8   5.4e-27   2.4e-23       1      64 [.      37     101 ..      37     102 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 5.4e-27
  ribosomal_L24   1 vnvvkkhvkpsqqneq.GgiiekEapIhvSnVmlvdpkcgkptrvgfrlkedgkkvRvskksgee 64 
                    +n+v+kh+kp+q+ ++ Ggi+++Ea +h+SnV++++ +++k++r+ ++++edgkk R+++++ge+
     EGE24539.1  37 INIVTKHQKPNQMLGKeGGIVKQEAFLHISNVAIYNANTQKADRIAYQVNEDGKKERIYRSTGEV 101
                    6***********98888**********************************************98 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   5.1   5.7e-10   2.5e-06       1      29 [.       6      34 ..       6      36 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 5.7e-10
                TTSEEEESSSTTTTCEEEEEEEETTTTEE CS
         KOW  1 pGdhVkVvsGphkGktGkVvkvdqhkvrV 29
                +Gd+V V++G++kGk+G+++ v  ++v+V
  EGE24539.1  6 KGDTVVVIAGKDKGKQGTILAVKADRVKV 34
                7*************************988 PP

>> ProQ_C  ProQ C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.4   1.3e-05      0.06       3      35 ..       2      35 ..       1      36 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
                SSS-TT--B---SSS.S---EEEEEE-SSSEEEE CS
      ProQ_C  3 aeLkvGqqVkVklGk.spmpAtileiaKddVrVq 35
                a+L +G++V V +Gk + +++til ++ d V+V+
  EGE24539.1  2 AKLRKGDTVVVIAGKdKGKQGTILAVKADRVKVE 35
                789***********94569*************97 PP

>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.2e-05      0.14       5      45 ..       2      43 ..       1      46 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
                   HHHHTT--EEEESSTTTT-BEE.EEEEGGG--HHHHHHHHHH CS
  DHBP_synthase  5 ealkaGkfvivvDdedrenegd.LiiaAekvtpekvafmirh 45
                   ++l++G  v+v+  +d+ ++g  L ++A+ v+ e ++++ +h
     EGE24539.1  2 AKLRKGDTVVVIAGKDKGKQGTiLAVKADRVKVEGINIVTKH 43
                   689*********99999888653789************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 788.47
//
Query:       EGE24540.1  [L=122]
Description: 50S ribosomal protein L14 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-55  184.1   1.1    9.2e-55  184.0   1.1    1.0  1  Ribosomal_L14  Ribosomal protein L14p/L23e


Domain annotation for each model (and alignments):
>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   1.1   5.1e-59   9.2e-55       1     122 []       1     122 []       1     122 [] 0.99

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 5.1e-59
                    ..CSS-EEE--SSSSBSEEEEEEETT-.---EE-SSSEEEEEESSS-T...TTSSCEEEEEEEE-SS-EE-TTS-EEEESS-EEEEB-TTS-BSS- CS
  Ribosomal_L14   1 miqlktrlkvaDNsgakevecikvlggkkrkaasvGdiivvsvkkakpkgkvkkgdvvkavvvrtkkevrrkdGsvirfddnaaVllnkkgeplGt 96 
                    miq++t+l+vaDNsga++v+cikvlgg++r++asvGdii v+vk+a+p+g+vkkgdv++avvvrtkk vrr+dGsv+rfddnaaVlln+++ p+ t
     EGE24540.1   1 MIQTETMLEVADNSGARRVQCIKVLGGSHRRYASVGDIIKVTVKEAIPRGRVKKGDVMNAVVVRTKKGVRRPDGSVLRFDDNAAVLLNNNKAPIAT 96 
                    9*********************************************************************************************** PP

                    .B-SBEEHHHHHH.-HHHHHTBSBE. CS
  Ribosomal_L14  97 rifgpvarelrekkflkivslApevl 122
                    rifgpv+relr+++f+kivslApevl
     EGE24540.1  97 RIFGPVTRELRSEQFMKIVSLAPEVL 122
                    ************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 957.65
//
Query:       EGE24541.1  [L=90]
Description: 30S ribosomal protein S17 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-32  110.1   1.6      5e-32  109.8   1.6    1.1  1  Ribosomal_S17  Ribosomal protein S17


Domain annotation for each model (and alignments):
>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   1.6   2.8e-36     5e-32       1      67 [.      15      81 ..      15      82 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 2.8e-36
                   EEEEE--STTEEEEEEEEEEEETTTTEEEEEEEEEEEE-TTTS--TT-EEEEEEECECSSSEEEEEE CS
  Ribosomal_S17  1 GvVvsdkmdkTvvVrverlvkhpkykkyvkrrkkylahdennsvkvGDiVrieecrPlSktkrfvvv 67
                   G+V+s+kmdk++vV ver+ +hp y+k v+r++k++ahdenn++++GDiVri+e+rP+Sktk++ +v
     EGE24541.1 15 GKVISNKMDKSIVVLVERQIRHPMYGKQVRRSTKIKAHDENNICQEGDIVRIKETRPFSKTKTWALV 81
                   99**************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 779.99
//
Query:       EGE24542.1  [L=65]
Description: 50S ribosomal protein L29 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-20   70.3   5.6    1.1e-19   70.2   5.6    1.0  1  Ribosomal_L29  Ribosomal L29 protein
  ------ inclusion threshold ------
        0.2   11.2   1.8       0.22   11.1   1.8    1.0  1  PEARLI-4       Arabidopsis phospholipase-like protein (PEARLI
       0.22   11.7   1.5       0.26   11.4   1.5    1.1  1  MRP-L47        Mitochondrial 39-S ribosomal protein L47 (MRP-


Domain annotation for each model (and alignments):
>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   5.6   1.8e-23   1.1e-19       1      57 []       4      60 ..       4      60 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 1.8e-23
                   HHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHTSSS-CHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29  1 kelrelsdeeLkeklkelkkeLfnLrfqkatgqlenpsrirkvRkdIARikTvlrer 57
                   +elre+s++eL + l+e +   f+Lr++katgql n+++i++ R++IA i+T+++e+
     EGE24542.1  4 NELREKSVDELAQLLDEKQLDAFRLRMAKATGQLANTHEIKNNRRTIAKILTLINEK 60
                   69******************************************************8 PP

>> PEARLI-4  Arabidopsis phospholipase-like protein (PEARLI 4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.8   3.6e-05      0.22     209     257 ..       7      60 ..       1      64 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.6e-05
    PEARLI-4 209 mekqekelae..kEKeikevrekvtemaaklg...elemkrarlekrlaflssK 257
                  ek+++ela+   EK++  +r ++ + +++l+   e++ +r  + k l++++ K
  EGE24542.1   7 REKSVDELAQllDEKQLDAFRLRMAKATGQLAnthEIKNNRRTIAKILTLINEK 60 
                 3778889987446******************84446889999999999999876 PP

>> MRP-L47  Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.5   4.4e-05      0.26      25      86 ..       3      59 ..       1      60 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.4e-05
     MRP-L47 25 aeeLrkksfedLhklwyvllkekNmLlteeeellrkqekmpsperlkkvkesMeniktVlke 86
                ++eLr+ks+++L +    ll ek  L + +  + + + + ++   +k+ ++++++i t ++e
  EGE24542.1  3 TNELREKSVDELAQ----LLDEKQ-LDAFRLRMAKATGQLANTHEIKNNRRTIAKILTLINE 59
                789***********....888886.56999999999999999999***********999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 503.55
//
Query:       EGE24543.1  [L=137]
Description: 50S ribosomal protein L16 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-48  163.4   1.6    2.7e-48  163.3   1.6    1.0  1  Ribosomal_L16  Ribosomal protein L16p/L10e


Domain annotation for each model (and alignments):
>> Ribosomal_L16  Ribosomal protein L16p/L10e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.3   1.6   1.5e-52   2.7e-48       1     132 []       4     132 ..       4     132 .. 0.98

  Alignments for each domain:
  == domain 1  score: 163.3 bits;  conditional E-value: 1.5e-52
                    HXSSXXBSSSXXSSTSXXXSXXXXXESXEEEEESSXEEEEHHHHHHHHHHHCTCCCCTSXCEEXXSXXXXEEEEE-SS-TTTSSSSXEEEEEEEEE CS
  Ribosomal_L16   1 pkrkkyrKsrkryirgvstkgtklefgdygLvalekgqltaealeaariainrylkkkrgkklwirvfphhpvtkkagedRmgkGkGkpegwvarv 96 
                    pkr+k+rK++k  ++g +++g++++fg++gL++  +g++ta+++eaar++i+r++k  rg+k+wirvfp++p+t+k+ e+RmgkGkG +e+wva +
     EGE24543.1   4 PKRTKFRKMHKGRNTGLAQRGNTVAFGEIGLKSIGRGRMTARQIEAARRTITRRIK--RGGKIWIRVFPDKPITEKPLEVRMGKGKGPVEYWVAEI 97 
                    89*********556******************************************..************************************** PP

                    XSSCEEEEETTXXXSHHHHHHHHHHHHTSSSXEEEE CS
  Ribosomal_L16  97 kigqiifeikagvneeiakealrraasKlpiktkiv 132
                    k+g++++ei +gv+e+ a+eal++aa+Klp+kt iv
     EGE24543.1  98 KPGKMLYEI-QGVSEDLAREALTLAAAKLPFKTTIV 132
                    *********.99*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1073.04
//
Query:       EGE24544.1  [L=240]
Description: 30S ribosomal protein S3 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-40  136.7   0.9    5.4e-40  135.8   0.9    1.5  1  Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
      5e-19   67.9   0.3    8.7e-19   67.1   0.3    1.4  1  KH_2            KH domain
    0.00031   20.5   0.2      0.001   18.9   0.1    1.9  2  KH_4            KH domain
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.17   11.8   0.0    1.3  1  MRP-S24         Mitochondrial ribosome subunit S24
       0.14   12.0   0.9       0.27   11.1   0.5    1.7  1  KH_1            KH domain


Domain annotation for each model (and alignments):
>> Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   0.9   1.5e-43   5.4e-40       1      83 []     120     202 ..     120     202 .. 1.00

  Alignments for each domain:
  == domain 1  score: 135.8 bits;  conditional E-value: 1.5e-43
                     HHHHHHTT--HHHHHHHHHHHHHHCC-SEEEEEEEC-SS.TTT--EEEEEEC----TCHHHH-EEEEEEEEETTEEEEEEEEE CS
  Ribosomal_S3_C   1 iaeqlekrvsfRramkkairramkagakGikiqvsGrLggaeiarsekykeGrvplhtlradidyavaeaktkyGiiGvkVwI 83 
                     ia+qle+rv fRramk+a+++ m++ga+Gik+++sGrLggaeiar+e+y+eGrvplhtlradidya  +a+t+yG+iGvkVwI
      EGE24544.1 120 IASQLERRVMFRRAMKRAVQNSMRSGAQGIKVELSGRLGGAEIARTEWYREGRVPLHTLRADIDYASVRAETTYGTIGVKVWI 202
                     89********************************************************************************9 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.3   2.4e-22   8.7e-19       2      77 ..      39     110 ..      38     111 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 2.4e-22
                 HHHHHHHHTECETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTG CS
        KH_2   2 ipeslaveikkagvskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklnivkVkkpe 77 
                 ++++l +++++a vs++ Ier++ +++i+i++++pgi+IGk+G++i++++kel k +    g ++++ni ++ +p+
  EGE24544.1  39 VRNFLRKKLEGAMVSHIYIERPTGAAKITIHSARPGIIIGKKGEDIESLQKELTKLM----GVPAQVNIQEISQPD 110
                 79*******************************************************....9**********9987 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.9e-07     0.001      20      55 ..      55      88 ..      38      96 .. 0.76
   2 ?   -1.7   0.0      0.78   2.8e+03       8      23 ..      91     106 ..      88     113 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.9e-07
        KH_4 20 vteeeeeeeveielnvegedlGrvIGkrGrtldAlq 55
                +   +e+ +   ++++++   G++IGk+G+ + +lq
  EGE24544.1 55 I--YIERPTGAAKITIHSARPGIIIGKKGEDIESLQ 88
                3..356788999***********************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.78
        KH_4   8 lkalvddpeevevtee 23 
                 l++l+  p++v+++e 
  EGE24544.1  91 LTKLMGVPAQVNIQEI 106
                 6778889999999986 PP

>> MRP-S24  Mitochondrial ribosome subunit S24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.8e-05      0.17      22      86 ..       2      67 ..       1      73 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.8e-05
     MRP-S24 22 akkphqiavrKswnswntsnlegeer.aaettveDvfirkFitGtfhkllaseiiikRranviria 86
                 +k h i++r +    + +n   + +  +e  ++D  +r+F++   +++++s+i i R +   +i+
  EGE24544.1  2 GQKVHPIGIRLGVIKKHNANWYANPKqYSEYLLNDFQVRNFLRKKLEGAMVSHIYIERPTGAAKIT 67
                578899***********99988776648999**************************987766665 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   7.5e-05      0.27       4      28 ..      66      90 ..      63      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.5e-05
                EEEGGGHHHHHHTGGGHHHHHHHHH CS
        KH_1  4 ilvPsslvgriIGkgGsnIkeIree 28
                i+++s   g iIGk+G+ I ++++e
  EGE24544.1 66 ITIHSARPGIIIGKKGEDIESLQKE 90
                677777779**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1830.31
//
Query:       EGE24545.1  [L=109]
Description: 50S ribosomal protein L22 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-32  110.5   0.3    4.4e-32  110.4   0.3    1.0  1  Ribosomal_L22  Ribosomal protein L22p/L17e


Domain annotation for each model (and alignments):
>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.3   2.5e-36   4.4e-32       1     102 [.       5     107 ..       5     108 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 2.5e-36
                    EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHT-SSTTHHHHHHHHHHHHHHHH..HT.-GGGEEEEEEEEEEEEEEEEEEEESTTEEEEEEEEE CS
  Ribosomal_L22   1 akgsnlrvsfkklrevarlIrgmkveeAlkyLkfskkkaakfvlklLknaeanaelkgl.dvdslvIeeiqvnkgpklkrrtyrArGrinpirksp 95 
                    ak + + +s +k+r va+ +rg+++e+Al++L fs+kk ak v+k+L +a+anae++++ d d+l +++i+v++g +lkr+++rA+Gr+++i k++
     EGE24545.1   5 AKLRGAAISAQKVRLVADEVRGKPIERALDILTFSNKKGAKLVKKCLDSAIANAEHNNGlDIDKLRVTTIYVDEGITLKRIMPRAKGRADRISKRT 100
                    5778889************************************************88778************************************ PP

                    EEEEEEE CS
  Ribosomal_L22  96 chievvl 102
                    chi+v +
     EGE24545.1 101 CHITVKV 107
                    ****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 789.07
//
Query:       EGE24546.1  [L=91]
Description: 30S ribosomal protein S19 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-35  119.2   0.1    5.7e-35  119.0   0.1    1.0  1  Ribosomal_S19  Ribosomal protein S19


Domain annotation for each model (and alignments):
>> Ribosomal_S19  Ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.1   3.2e-39   5.7e-35       1      81 []       3      83 ..       3      83 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 3.2e-39
                   .HHHSSTTCCCHHHHHHHHHHTS-----EEES-TT-B--GGGTT-EEEEE-SSSEEEEE--CCCTTSBCGGGT-SS----S CS
  Ribosomal_S19  1 rslkkgpfvqesllkkvrkakaekkkevikthsRdstIlPemvgltvgVynGktfvpveikeemvGhkLgEFspTrkpvkh 81
                   rslkkgpf++++l++kv++a +++++++ikt+sR+s+IlP+mvglt++V+nG+t+vpv ++e+mvGhkLgEF+pTr +++h
     EGE24546.1  3 RSLKKGPFIDAHLFAKVENALESNSRKPIKTWSRRSMILPQMVGLTISVHNGRTHVPVIVSEQMVGHKLGEFAPTRSYRGH 83
                   89*******************99*******************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 724.34
//
Query:       EGE24547.1  [L=275]
Description: 50S ribosomal protein L2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-55  184.4   2.4    1.6e-54  183.4   2.4    1.5  1  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    6.4e-35  119.0   2.6    6.7e-35  118.9   1.3    1.7  2  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.4   2.4   1.8e-58   1.6e-54       2     126 .]     126     249 ..     125     249 .. 0.99

  Alignments for each domain:
  == domain 1  score: 183.4 bits;  conditional E-value: 1.8e-58
                     SSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B.SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHTTBS--- CS
  Ribosomal_L2_C   2 vGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvakegkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwlgrrpkv 96 
                     +Gn+lplknip+Gt++hnielk gkg+++arsaG+ +q+++++g +v+v+l+Sge+r+++++crA+iG+vsn+e++ k+lgkAg++rw+g+rp+v
      EGE24547.1 126 PGNCLPLKNIPVGTVIHNIELKIGKGAQIARSAGAAVQLLGRDGAYVIVRLRSGETRRIHANCRAVIGEVSNTENNLKSLGKAGAARWRGVRPTV 220
                     8********************************************************************************************** PP

                     -SSSS-TTTSSS--SSSS--SSSSTEETTC CS
  Ribosomal_L2_C  97 rGvamnpvdHphGGGeGktksrkapvspwg 126
                     rG+amnp+dHphGGGeG++ ++ +p+spwg
      EGE24547.1 221 RGTAMNPIDHPHGGGEGRNFGK-HPTSPWG 249
                     *******************999.9*****8 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   1.3   7.5e-39   6.7e-35       1      76 [.      42     117 ..      42     118 .. 0.98
   2 ?   -3.4   0.0       1.1   9.9e+03      37      52 ..     141     156 ..     137     160 .. 0.71

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 7.5e-39
                   TB-TT--BSSTT--------EE-B--S---SS--EEEEEEE--TT-SS-EEEEEETTTEEEEEE--SS--SS-EE- CS
  Ribosomal_L2   1 GrnnsgritvrhrggGhkkkyrlidfkrnkekvkgkVveieyDpgRsApiAlvkyedgekryiiapeglkvGdtvv 76 
                   Grnn+grit+rh+ggGhk++yrlidfkrnk++++++V++ieyDp+R+A+iAl+ky dge+ryiiap++l+vGd v 
    EGE24547.1  42 GRNNNGRITTRHIGGGHKQHYRLIDFKRNKDGIPAVVERIEYDPNRTAHIALLKYADGERRYIIAPKKLSVGDQVQ 117
                   9************************************************************************985 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.1
                   EEEEE--TT-SS-EEE CS
  Ribosomal_L2  37 VveieyDpgRsApiAl 52 
                   + +ie   g+ A+iA+
    EGE24547.1 141 IHNIELKIGKGAQIAR 156
                   5566667778888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2243.23
//
Query:       EGE24548.1  [L=109]
Description: 50S ribosomal protein L23 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-27   94.1   2.8    5.7e-27   93.9   2.8    1.0  1  Ribosomal_L23  Ribosomal protein L23


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   2.8   3.2e-31   5.7e-27       1      85 [.       8      94 ..       8      95 .. 0.96

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 3.2e-31
                   SSEEEE--SHHHHHHHTT.E.EEEEE-SS-THHHHHHHHHHHH.T--EEEEEEEEE--EBESSSSSEEBE--EEEEEEEESSS-SSS CS
  Ribosomal_L23  1 dvilkPvitEkstklaek.nkyvFeVakdanKleikkaveklF.gVkVekVntlnvkgkkkrvgrkvgrrksyKkaiVtLkegekid 85
                   +v+++Pv++Eks++l ++    vF+V+ +a+K eik+ave +F gV+V kVntln kgk+kr+gr vg+r+++Kka+VtLk+g++++
     EGE24548.1  8 QVLKAPVFSEKSQRLGDTlGVQVFKVDSTATKREIKQAVELMFeGVEVVKVNTLNTKGKTKRFGRVVGKRSDVKKAYVTLKAGSDVQ 94
                   5899************98779**********************99*************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 844.13
//
Query:       EGE24549.1  [L=200]
Description: 50S ribosomal protein L4 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-64  215.9   0.2    4.3e-64  215.8   0.2    1.0  1  Ribosomal_L4  Ribosomal protein L4/L1 family


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.8   0.2   2.4e-68   4.3e-64       1     191 [.      11     197 ..      11     198 .. 0.99

  Alignments for each domain:
  == domain 1  score: 215.8 bits;  conditional E-value: 2.4e-68
                   EEE-HHHHSS---HHHHHHHHHHHHHSS-EE------TTTSS---S-SS-SSSSSS---S-TTSTTSTT---SS---S.EEHHHHHHHHHHHHHHHH CS
  Ribosomal_L4   1 veLspkvFaapirrdlihravvaylanrrqgtastkarsevsgsgrklwkQKGtGrARvgsirspiargGgvahgpkperdystklnkKvrrlAlrs 97 
                   veLs+ +F+ ++++ l+h++v+ayla +rqgt ++k+r+evsg+g+k+w+QKGtGrAR+gsirspi++gGg+a++ kp +d+s+k+n+K++r A++ 
    EGE24549.1  11 VELSEITFGREFNEALVHQVVTAYLAGARQGTRAQKTRGEVSGGGKKPWRQKGTGRARAGSIRSPIWVGGGRAFAAKP-QDWSQKVNRKMYRGAMQC 106
                   7999*************************************************************************9.****************** PP

                   HHHHHHHTT-EEEES---.-SS--HHHHHHHHHHTT-TTSSEEEEESSSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSEEEEEHHHHHHHHH CS
  Ribosomal_L4  98 aLsakakqglllvvdnlepleesktkelvellkklglksksvLivvsekdenlvlaarnlpgvevieveslnvydllkadkvvitksaveklee 191
                   +L++ ++q++l++vd++  +  +ktkel++ l +l++   ++Liv++e denl+laarn+p v+v+ +++++  +l+  dkv++t +a +++ee
    EGE24549.1 107 ILAELVRQERLVLVDDIA-VSAPKTKELIAKLAELNA--PRALIVTHEVDENLYLAARNIPYVNVLGTREVDPVSLVSFDKVIMTVEAAKQFEE 197
                   *****************9.******************..99***************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1602.85
//
Query:       EGE24550.1  [L=212]
Description: 50S ribosomal protein L3 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-13   50.8   5.5    1.2e-13   50.8   5.5    2.3  3  Ribosomal_L3  Ribosomal protein L3


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.05     9e+02      46      59 ..       5      18 ..       3      63 .. 0.57
   2 !   50.8   5.5   6.5e-18   1.2e-13     207     290 ..      99     185 ..      27     189 .. 0.85
   3 ?    0.5   0.0     0.013   2.3e+02     323     345 ..     188     210 ..     184     212 .] 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.05
                  EEEEEEEEEEEEEE CS
  Ribosomal_L3 46 flGyKaGmthiVre 59
                  ++G K Gmt++  e
    EGE24550.1  5 LVGKKCGMTRVFTE 18
                  56666666555433 PP

  == domain 2  score: 50.8 bits;  conditional E-value: 6.5e-18
                   ECCCCS-TTSEEEEEEEE---EEE-HHHHCT----STTTSSS..SSS-S-SS-S.SSSS--TTS--SEEESCCEEEEEEEEEEEEET CS
  Ribosomal_L3 207 avaavFrqgeliDvigvtkGkGfeGvvkRWgvkklprkthrg..lRkvaaigaw.dparVsstvaraGqkGyhhRtelnkkiyrigk 290
                    +a++F+ g+l+Dv+g  kGkGf+G vkR  ++ + ++++ +  +R +++ g    p+rV  + +++Gq+G+ + t  ++ i  +++
    EGE24550.1  99 ILADIFEVGQLVDVTGQSKGKGFQGGVKRHNFRTQDATHGNSvsHRVLGSTGQNqTPGRVFKGKKMPGQMGNKRVTVQGLEIVSVDA 185
                   57899************************************999*******976269****************99999999998876 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.013
                   CEEEEES--SSSTTEEEEEEE-S CS
  Ribosomal_L3 323 dfilvkGsvpGpkkrlvklrksl 345
                    ++++kG+vpG +   v +r+s+
    EGE24550.1 188 GVLVIKGAVPGANGGDVIVRPSV 210
                   5689********99999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1502.09
//
Query:       EGE24551.1  [L=103]
Description: 30S ribosomal protein S10 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-35  121.9   0.1    1.1e-35  121.7   0.1    1.0  1  Ribosomal_S10  Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.7   0.1   6.4e-40   1.1e-35       1      97 [.       7     100 ..       7     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 121.7 bits;  conditional E-value: 6.4e-40
                    EEEEEESSHHHHHHHHHHHHHHTTSSS-EE---EEEEEEEEEEEEE--SS--S--EEEEEEEEEEEEEEEE.E-HHHHHHHS-...S---SS-EEE CS
  Ribosomal_S10   1 rirlkSydsklLekavkkivraakelgikvkgpvplPtkrkrvtvlksphvdkksreqfeirthkRlidisdatketidtllkllqlnlpegVsve 96 
                    rirlkS+d++l+++++++iv++ak++g++v+gpvplPt+ +r+ vl sphv+k+ r+q+eirthkR+idi ++t++t+d+l+k   l+l +gV+v+
     EGE24551.1   7 RIRLKSFDHRLIDQSAQEIVDTAKRTGAQVCGPVPLPTRIERFNVLTSPHVNKDARDQYEIRTHKRMIDIVQPTDKTVDALMK---LDLAAGVDVQ 99 
                    8**********************************************************************************...********99 PP

                    E CS
  Ribosomal_S10  97 v 97 
                    +
     EGE24551.1 100 I 100
                    7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 839.76
//
Query:       EGE24552.1  [L=542]
Description: ribonuclease G [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-97  324.0   2.3    9.2e-97  323.7   2.3    1.1  1  RNase_E_G  Ribonuclease E/G family
     0.0013   19.1   0.0      0.036   14.4   0.0    2.9  3  S1         S1 RNA binding domain


Domain annotation for each model (and alignments):
>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.7   2.3    1e-100   9.2e-97       1     270 []     167     445 ..     167     445 .. 0.96

  Alignments for each domain:
  == domain 1  score: 323.7 bits;  conditional E-value: 1e-100
   RNase_E_G   1 slaGrylVllpegkk.vgvSkkiedeeererlkelleelkpe...evGlIvRtaaegaseeelekdleelkkkweeileka.....kkrkapsllyeee 90 
                 sl++rylV+lp++++ vgvS +ie++eer+rlk++l++l+++   + GlI Rtaae++se++l++d+ +l + w++i++++     +++k+ +l+y+e 
  EGE24552.1 167 SLPSRYLVYLPTNDEyVGVSIRIEETEERTRLKDILTQLMQNanlKGGLIARTAAEEMSESKLKEDIYYLLQLWQTIIARQaatrlHSNKRSELIYQEL 265
                 89*********55555********************99996544577******************************99987777655889******** PP

   RNase_E_G  91 dlllrvlrdllnedieeivvddkelyeeikeyleevapeleekvelyeeeeplfelysiekqiekalsrkvwlksGgylvIeqTEAltvIDVNsGkftg 189
                 +l lr++rdl+ne+++++++d++ +y+e+ ++++e+ p  +  v++y +e+plf+ly++e+ +++al+r+v+lksGgyl+I+qTEA+t+IDVN+G+++g
  EGE24552.1 266 SLPLRCIRDLVNEKTTKVLIDNEMMYHEVAHFAQEFVPFIAPMVTHYAGETPLFDLYRVEEDLQNALKRRVELKSGGYLIIDQTEAMTTIDVNTGSYVG 364
                 *************************************************************************************************** PP

   RNase_E_G 190 kknleetvlktNleAaeeiarqlrLRnlgGiIviDFIdmkeeenreevleelkealkkDraktqvleitklgLveitRkrv 270
                  + le+tv+ktNleA++ iarq+rLRnlgGiI+ DFIdm+ee +r  vl+ l+e+l +D akt+++++++lgLve+tRkr+
  EGE24552.1 365 ARCLEDTVYKTNLEATHAIARQIRLRNLGGIIILDFIDMSEEVHRADVLASLQEQLTHDYAKTNITQVSELGLVEMTRKRT 445
                 *******************************************************************************96 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     4e-06     0.036       4      40 ..      38      76 ..      37      86 .. 0.87
   2 ?    0.2   0.0      0.11     1e+03      49      73 ..     139     163 ..     131     165 .. 0.86
   3 ?   -0.8   0.0      0.23     2e+03      44      62 ..     512     530 ..     505     531 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4e-06
                TTCEEEEEEEEEET..TEEEEEETTTEEEEEEGGGSSSS CS
          S1  4 kgevveGeVtsvtk..gGafVelgngvegfvpaselsrd 40
                +g+++ G+V +v +   +afV++g   ++f++a+++   
  EGE24552.1 38 VGNIYLGTVARVLPgmQAAFVDIGQARTAFLHANDMQKP 76
                699***********999*****************99854 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.11
                 CEETTEEEEEEEEEEETTTTEEEEE CS
          S1  49 vlkvGdevkvkvlkvdkdrrriils 73 
                 +l++Gd++ v+v k +  +++++l+
  EGE24552.1 139 RLREGDKILVQVVKDELGTKGARLT 163
                 6899*********999999888887 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.23
                 SCHHHCEETTEEEEEEEEE CS
          S1  44 edpdevlkvGdevkvkvlk 62 
                  + d ++ +G+++++++++
  EGE24552.1 512 TVADLEYLIGKPIRFEIEN 530
                 5677899********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4353.19
//
Query:       EGE24553.1  [L=203]
Description: septum formation protein Maf [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-46  158.5   0.1    1.4e-46  158.4   0.1    1.0  1  Maf       Maf-like protein
  ------ inclusion threshold ------
       0.07   13.2   0.3       0.56   10.3   0.2    2.2  2  DUF3185   Protein of unknown function (DUF3185)


Domain annotation for each model (and alignments):
>> Maf  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.4   0.1   1.6e-50   1.4e-46       2     165 ..       9     196 ..       8     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 158.4 bits;  conditional E-value: 1.6e-50
                 EEEE---HHHHHHHHCT-..EEEE------.......HHHHHHHHHHHHHHHHH........TCEEEEEEEEEE...CE---SSHHHHHHHHHHHTTSE CS
         Maf   2 liLASaSprRkelLeqlg..fevvpsdvde.......aeelvlrlAeaKaeava........alvigaDtvvvl...ilgKPkdeeealemLkklsgrt 80 
                 ++LAS+SprR+elL  +g  f v + ++de       +++++ r+   Ka+++a        +l+i+aDt+ v+   +l KPkd+++a++m+++ls+++
  EGE24553.1   9 IVLASTSPRRQELLLAAGvkFVVNAVEIDEswqakeaPTDYINRMVLTKAQQAAlnshlpdkCLLITADTIGVIddlVLTKPKDQADAYRMWQMLSDTS 107
                 9***************99888999999999999999*889***********9999******999*********86545********************* PP

                 EEEEEEEEEEE.......EEE..EEEEEEEEEE----HHHHHHHHHCTSGCCSTTS--TTCGGGGGCEEEECS-HHHHHT--HHHHHHHHCC CS
         Maf  81 hevvTgvavlk.......ekevksfvettevtfkelsdeeieaYvatgepldkAGaygiqgllglalverieGsysnVvGLPlaellelLke 165
                 he++T+v++         +  ++  +e t+vtf ++++++++ Y+a+gep dkA ay+iqg  ++a+v +i+Gsy+nVvGLPla++l+l+++
  EGE24553.1 108 HEIWTAVCISVidasqivD--QAVICECTKVTFVKITQAMMATYWASGEPQDKAVAYAIQGG-AMAWVLSIDGSYTNVVGLPLAQTLALIDK 196
                 ********98899988642..345689**********************************5.999*********************99987 PP

>> DUF3185  Protein of unknown function (DUF3185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.093   8.4e+02       7      38 ..      22      59 ..      21      64 .. 0.62
   2 ?   10.3   0.2   6.3e-05      0.56      31      52 ..     149     170 ..     140     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.093
     DUF3185  7 LlvaGivLlvfGy......nasdSlgsqvseaftGstt 38
                Ll+aG+ ++v  +      +a+++ ++ + +++  + +
  EGE24553.1 22 LLAAGVKFVVNAVeideswQAKEAPTDYINRMVLTKAQ 59
                67777777776664444447777777777777666555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 6.3e-05
     DUF3185  31 eaftGsttdktlllligGgvaa 52 
                    +G+++dk++++ i Gg++a
  EGE24553.1 149 YWASGEPQDKAVAYAIQGGAMA 170
                 4567**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1721.53
//
Query:       EGE24554.1  [L=95]
Description: glutamyl-tRNA(Gln) amidotransferase, C subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-11   44.7   0.0    1.8e-11   44.1   0.0    1.2  1  Glu-tRNAGln  Glu-tRNAGln amidotransferase C subunit


Domain annotation for each model (and alignments):
>> Glu-tRNAGln  Glu-tRNAGln amidotransferase C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0     1e-15   1.8e-11       1      62 []      19      90 ..      19      90 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1e-15
                 --HHHHHHHHHHHHHHHHHHTTCGCS--TT----S.......-EB-S--.....HHHHHTT-SSEETTEEEE CS
  Glu-tRNAGln  1 lseeEleklakelnsildyveqLqevdttgveplthp.....vlReDev.....reelLknApetedgyfvV 62
                 l+e+ ++ +a+ l++il++++ L+ v+t++++pl+++      lR+D +     r+ +++ Ap ++dg ++V
   EGE24554.1 19 LDEKTAQNYAGNLDKILAMMDILDGVNTDNIKPLANIheacnELRADIAnsdigRDGFQAVAPMVQDGLYLV 90
                 67888999***************************************7578899999************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 727.84
//
Query:       EGE24555.1  [L=477]
Description: aspartyl/glutamyl-tRNA amidotransferase subunit A, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.7e-161  535.7   0.0   1.1e-160  535.5   0.0    1.0  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  535.5   0.0  6.1e-165  1.1e-160       1     451 []      25     471 ..      25     471 .. 0.99

  Alignments for each domain:
  == domain 1  score: 535.5 bits;  conditional E-value: 6.1e-165
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkT 99 
                 elve+f +ri++++ ++n+++t ++++alaqA+ +dk ra + ++ pL GvP++ KDn+++kgv ttaGsk+l n+++++Datvv+ + ++G+v lgk 
  EGE24555.1  25 ELVEHFANRINRLDGQINSFITKDFDNALAQAKLADKLRA-KGDNRPLLGVPMAHKDNLCTKGVLTTAGSKMLYNFVSPYDATVVDSIANSGFVSLGKL 122
                 79*************************************8.999******************************************************* PP

                 --SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHH CS
     Amidase 100 nmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsve 198
                 nmdefamgs+ e+s+fg+++NPwd +r+pGGSSGGsAAavAag+vp+a+G+DtGGSiR+PAsfcg++G+KPtygrvSr+g++a++ssld++G +++s+ 
  EGE24555.1 123 NMDEFAMGSDNESSYFGAVHNPWDVQRVPGGSSGGSAAAVAAGFVPVATGSDTGGSIRQPASFCGITGIKPTYGRVSRYGMIAYASSLDQAGTFGKSAL 221
                 *************************************************************************************************** PP

                 HHHHHHHHHBS--TT-TTS----....HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHH CS
     Amidase 199 dlalllrvilgedpkdstssvip....eesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyylilv 293
                 d+a+ll  ++g+dpkd ts + p     ++   +++ +k l g++iGv k ++ a ld ev++++++al++ ee+G+++vev++ +++  l++yyl+++
  EGE24555.1 222 DCAYLLAPMAGYDPKDATSINRPsedyVADILATATDGKPLAGKKIGVAKAYFGAGLDSEVEKSIRTALAKYEELGAKIVEVDITDPAITLATYYLLAP 320
                 *********************9988777777889999************************************************************** PP

                 HHHHHHTTT-SSSSS.---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCC CS
     Amidase 294 aeassnlarylgvry.erlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlge 391
                 aeassnl+ry+gvr+ +r++++k+l++l+++sr+e++g ev+rri++g+yalsa+++++yy kaqkvrrl+ ++f+kafe++D+++sPtaptpa +lge
  EGE24555.1 321 AEASSNLSRYDGVRFgYRCENPKDLHDLYTRSRSEGFGAEVQRRIIMGTYALSAGYFDAYYTKAQKVRRLIVDDFKKAFEKCDIIASPTAPTPAYKLGE 419
                 **************************************************************************************************9 PP

                 CCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 392 kdktidsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                       +++++y+l+++t   + vnlaglpals p+g+  +glPvG+q+i+k+++e++lL
  EGE24555.1 420 S----LDPASIYLLDVYT---IGVNLAGLPALSHPVGQA-NGLPVGLQLISKHWAESELL 471
                 9....69***********...****************86.6*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3707.36
//
Query:       EGE24698.1  [L=99]
Description: hypothetical protein EA1_07017 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 846.14
//
Query:       EGE24699.1  [L=639]
Description: threonyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-46  156.0   0.0    2.1e-45  154.9   0.0    1.6  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    1.6e-18   66.7   0.1    4.4e-18   65.2   0.1    1.8  1  HGTP_anticodon  Anticodon binding domain
    6.6e-15   54.9   0.0    1.3e-14   53.9   0.0    1.5  1  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad
    2.4e-14   53.1   0.1    4.9e-14   52.1   0.1    1.6  1  TGS             TGS domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   0.0   4.8e-49   2.1e-45       6     179 .]     321     528 ..     317     528 .. 0.96

  Alignments for each domain:
  == domain 1  score: 154.9 bits;  conditional E-value: 4.8e-49
                   TTSEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   6 rndreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefra 100
                    ++r+y++kP+n++ +v+++++  l+s+r LPl+l+++++++R+E+s +++G++Rvr+F+q+d+++f+++a+++++  + ik++ ++++++g+   +
    EGE24699.1 321 SEKRDYAIKPMNCPCHVQVFNQG-LKSYRdLPLRLAEFGSCHRNEPSgSLHGIMRVRGFTQDDAHIFCTNAQIRQEALNFIKLTLDVYKDFGFDHIQ 416
                   357*****************966.***777****************999*******************************************99999 PP

                   EEEEGTTSC.................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEE CS
                   xxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 101 iielmsaks.................................adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimica 164
                   ++++++ ++                                 a+y++k ef + ++ +++++++gt q + ++l+erl+a+++ e +++++++m+++
    EGE24699.1 417 MKLSTRPEKrvgadelwdlaeqaladaldnagldwelqagegAFYGPKIEFSLQDC-IGRVWQCGTLQLD-FNLPERLNAEFVGESGERERPVMLHR 511
                   999988888999********************************************.*************.************************** PP

                   E.EE.HHHHHHHHHHHH CS
                   x.xx.xxxxxxxxxxxx RF
  tRNA-synt_2b 165 a.ig.veRllsaileqn 179
                   a +g  eR++++++e++
    EGE24699.1 512 AiLGsFERFIGILIEHY 528
                   **9***********986 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.1   9.9e-22   4.4e-18       1      91 [.     540     627 ..     540     629 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 9.9e-22
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelvekl 91 
                     qvvv+++++   +  + + ++ ++L+a+g+r+  d +ne+ig+kire  l  ipf++++G+ke+e+gtv+vr+r+ +   ++ ld+++++l
      EGE24699.1 540 QVVVMNITD---KQADSVGDVVSKLNAKGYRAISDLRNEKIGFKIRERTLERIPFMLILGDKEVESGTVNVRTRTGDNLGSMNLDDFIKIL 627
                     899*****9...788*************************************************************************987 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0     3e-18   1.3e-14       3      44 .]     171     218 ..     168     218 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 3e-18
                 EEEETT.EEEEESS---SBGGGC-SEEEE.......CCECCCTCEEEEE CS
    tRNA_SAD   3 vvsiGdisvelCgGtHvpnTgeIgafkil.......seesiakglrRIy 44 
                 ++++ + ++++C+G+HvpnT++++afk++       ++++++++l+RIy
  EGE24699.1 171 LYHHQE-YIDMCRGPHVPNTRFLKAFKLTkmsgaywRGDAKNEQLQRIY 218
                 578887.9****************************************9 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.1   1.1e-17   4.9e-14       2      60 .]       3      61 ..       2      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 1.1e-17
                EEEETTSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEEE CS
         TGS  2 rvytPdGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIvt 60
                 +++PdG++++++ ++tv+++A++I+ +lak++++++VnG++v+ + ++  +++veI+t
  EGE24699.1  3 AITLPDGSIKQFDGNTTVMQVAQSIGAGLAKATVAGRVNGRLVDASDPITTDATVEIIT 61
                6899*****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.21s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 5107.78
//
Query:       EGE24700.1  [L=436]
Description: hypothetical protein EA1_07027 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00034   20.1   0.8       0.46    9.9   0.1    2.4  2  SMC_N            RecF/RecN/SMC N terminal domain
     0.0018   18.6   0.2        2.1    8.8   0.0    2.7  2  RNA_helicase     RNA helicase
  ------ inclusion threshold ------
      0.015   15.8   0.4      0.082   13.4   0.2    2.2  3  ABC_tran         ABC transporter
      0.043   14.1   1.7        3.7    7.8   1.7    2.7  2  AAA_22           AAA domain
      0.052   13.7   0.3       0.15   12.2   0.3    1.7  1  Ribosomal_S17    Ribosomal protein S17
      0.053   13.3   0.0       0.13   12.0   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
       0.91    9.5   6.4        1.4    8.9   0.1    2.9  2  FixQ             Cbb3-type cytochrome oxidase component FixQ


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1   0.00047       1.2      26      57 ..     335     363 ..     324     396 .. 0.73
   2 !    9.9   0.1   0.00018      0.46     161     198 ..     400     435 ..     379     436 .] 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00047
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklr 57 
                    i G+NG+GKs++l  ++ +L++   +++ 
  EGE24700.1 335 RMTIKGRNGAGKSSFLLYLKTLLSN---RAFY 363
                 56799**********9888877774...3444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00018
                 EEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 161 lyllDeidaaLDeknvkkvaellkeksknaQfivislr 198
                 + +lDe da+LD  n + + el++e     Q +v+ +r
  EGE24700.1 400 VIILDEWDANLDGINKSHLDELINELA--RQRLVVEVR 435
                 679**********************99..777777665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0031         8      20      87 ..     165     238 ..     159     242 .. 0.84
   2 !    8.8   0.0   0.00083       2.1       3      76 ..     338     424 ..     336     435 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0031
  RNA_helicase  20 kallkklklkkkdsvysrnpeddfwdgYt...gqevvvidDfgqvk.dee.nps.dlaelirlvsstpyplnma 87 
                   ++++k +k  +k+++y+ +  +++wd+     + +v ++  +++++ +++ +++   + +++l+ss+ ++l m 
    EGE24700.1 165 NQISKMSKISQKSRIYFIAILNKIWDNVIifnQYNVGIFNRIYKKNfNRSkKYHiHSQSFNQLISSFGMILFMI 238
                   5788888999****************97666377788888898888777789999999********99998885 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00083
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl...........klkkkdsvys..rnpeddfwdgYtgqevvvidDfgqvkdeenpsdlaelirl 76 
                   + G++g GKS++  +L + l+++             +++k+s+     +   ++ ++ ++ +v++ d++ ++ d+ n+s l eli+ 
    EGE24700.1 338 IKGRNGAGKSSFLLYLKTLLSNRAfylpvshdlffHQNHKKSTGQklSSQLMQINNNISDVDVIILDEWDANLDGINKSHLDELINE 424
                   78*************888888777899999999994444444444123444556688889999999999999998888899998875 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.3   8.5e+03      41      64 ..      89     112 ..      85     123 .. 0.66
   2 ?   13.4   0.2   3.2e-05     0.082       8      36 ..     330     358 ..     326     397 .. 0.84
   3 ?   -1.2   0.0         1   2.6e+03     107     135 ..     376     406 ..     359     408 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.3
                 EEEETTCEGGGB-HHHCCHCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  41 eilldgkdlkeqeleslrkeigvl 64 
                 ++ll++k+lk+q++ ++++e++ +
  EGE24700.1  89 TVLLNNKELKDQSTVFVSQESKSV 112
                 466777777776666666666555 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.2e-05
                 EETTSEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllk 36 
                 l ++ ++ i G+nGaGKS++l  l  ll+
  EGE24700.1 330 LPKNGRMTIKGRNGAGKSSFLLYLKTLLS 358
                 56777899************999887766 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1
                 GGS-HHHHHHHHHHHH..HHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
    ABC_tran 107 ssLSgGqkqrvalara..llkkpkllllDEp 135
                 ++ S Gqk   +l+++   +++ ++++lDE 
  EGE24700.1 376 HKKSTGQKLSSQLMQInnNISDVDVIILDEW 406
                 5567788776666665114567789999996 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   4.2e+03      17      42 ..      87     102 ..      86     123 .. 0.70
   2 ?    7.8   1.7    0.0015       3.7      67     112 ..     375     425 ..     332     433 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
      AAA_22  17 GKTtllrrlleqldeeakaeeerpev 42 
                 GKT+ll++   +++          ++
  EGE24700.1  87 GKTVLLNNKELKDQ----------ST 102
                 99999999888854..........33 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0015
      AAA_22  67 elkaerlsseellealeqalraravielliiDEaqh.lr....s..eealeeL 112
                 ++  +  + + l ++l q  ++ +++ ++i+DE +  l+    s  +e+++eL
  EGE24700.1 375 NH--KKSTGQKLSSQLMQINNNISDVDVIILDEWDAnLDginkShlDELINEL 425
                 22..3467788887777777777778999999999999877432566666666 PP

>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   5.7e-05      0.15      21      40 ..     203     222 ..     197     227 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.7e-05
                    EETTTTEEEEEEEEEEEE-T CS
  Ribosomal_S17  21 khpkykkyvkrrkkylahde 40 
                     ++ ykk ++r+kky++h +
     EGE24700.1 203 FNRIYKKNFNRSKKYHIHSQ 222
                    5789**************75 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     5e-05      0.13      19      46 ..     330     357 ..     316     363 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5e-05
      AAA_29  19 idlkgatlltGpsGsGKSTllDAiqalL 46 
                 +  +g + + G++G+GKS++l  +++lL
  EGE24700.1 330 LPKNGRMTIKGRNGAGKSSFLLYLKTLL 357
                 44567899***********996666666 PP

>> FixQ  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   2.1      0.12   3.2e+02       2      21 ..     142     161 ..     141     162 .. 0.91
   2 ?    8.9   0.1   0.00056       1.4       8      30 ..     226     248 ..     222     253 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.12
        FixQ   2 tyealrgfadswgllflvll 21 
                 +y++l+++a  ++l+ ++++
  EGE24700.1 142 DYDLLVAYAVGFLLVEFFIF 161
                 7*************999998 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00056
        FixQ   8 gfadswgllflvllfygvviyaf 30 
                 +++ s+g++++++  +g+++y+f
  EGE24700.1 226 QLISSFGMILFMIPVLGLIVYLF 248
                 6788******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3532.06
//
Query:       EGE24701.1  [L=146]
Description: translation initiation factor IF-3 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-35  121.4   0.8    2.1e-35  120.5   0.8    1.4  1  IF3_C     Translation initiation factor IF-3, C-terminal doma
      5e-19   68.3   1.0    1.1e-18   67.2   1.0    1.6  1  IF3_N     Translation initiation factor IF-3, N-terminal doma


Domain annotation for each model (and alignments):
>> IF3_C  Translation initiation factor IF-3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.8   2.3e-39   2.1e-35       1      85 [.      58     142 ..      58     143 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 2.3e-39
                 S-EEEEEEESS--HHHHHHHHHHHHHHHHHT-EEEEEEE--S-TTSHHHHHHHHHHHHHHHTTTTEEEEEEEEE-SSEEEEEEEE CS
       IF3_C   1 ievKEiklrpkidehDlevKlknarkFLeegdkvKvtlrfrGReiahkelgkevleriaeeleevakvekkpklegrqmimvlap 85 
                 ++v+Eiklrp ++e D++vKl+++ +FLe++dkvK+++rfrGRe+ah+e+gk+ l+ri+e+++e+a ve++pk+egrqm m+l p
  EGE24701.1  58 TQVREIKLRPGTEEADYQVKLRKIVEFLENKDKVKISIRFRGREMAHQEIGKAQLDRIIEDTAEIAIVEQAPKVEGRQMGMLLGP 142
                 589********************************************************************************98 PP

>> IF3_N  Translation initiation factor IF-3, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   1.0   1.3e-22   1.1e-18      20      70 .]       1      51 [.       1      51 [. 0.98

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 1.3e-22
                EEEEEHHHHHHHHHHHTSEEEEEESSSSS-EEEEE-HHHHHHHHHHHHHHH CS
       IF3_N 20 lGvistreAlrlaeekgldLVevspnaepPVcrimdygkfrYeqkkkekea 70
                +Gv+ ++ Al+ a + +ldLVe+  +a+pPVc+imdy++++Yeqk+k+kea
  EGE24701.1  1 MGVVDIQTALKAALDVNLDLVEIVADAKPPVCKIMDYKRYLYEQKQKAKEA 51
                69***********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1922  (0.107201); expected 358.6 (0.02)
Passed bias filter:                      699  (0.0389871); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1023.82
//
Query:       EGE24702.1  [L=171]
Description: ribosomal-protein-alanine acetyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-11   44.7   0.0    2.4e-11   43.9   0.0    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.3e-10   41.3   0.1    2.1e-10   40.6   0.1    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.8e-10   39.6   0.0    7.7e-10   38.6   0.0    1.5  1  FR47             FR47-like protein
    7.7e-10   39.1   0.0    1.5e-09   38.2   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0006   19.5   0.0     0.0013   18.5   0.0    1.5  2  Acetyltransf_8   Acetyltransferase (GNAT) domain
     0.0017   19.1   0.0     0.0022   18.7   0.0    1.3  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
     0.0088   16.2   0.2      0.015   15.5   0.1    1.5  2  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.025   14.2   0.0      0.039   13.5   0.0    1.4  1  GNAT_acetyltran  GNAT acetyltransferase
      0.028   14.5   0.0      0.047   13.8   0.0    1.4  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
      0.048   13.6   0.0      0.095   12.7   0.0    1.5  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
        0.1   12.8   0.0        0.2   11.8   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   1.5e-14   2.4e-11      46     117 .]      77     144 ..      52     144 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.5e-14
                     EEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  46 GfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     G++ +  + +    + +++++  +p+++++G++++L++ l+ ++ +  ++ + l+v++dn+ ai lY+ lGF
      EGE24702.1  77 GYCIYQRVFE----NSELHRIGTHPNFQRQGVATQLMTGLIAEVMHAKCQQLLLEVRSDNTTAITLYQSLGF 144
                     6665656655....89*********************************999***************88**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.1   1.3e-13   2.1e-10      42     110 ..      75     148 ..      37     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.3e-13
  Acetyltransf_10  42 ivGvi...elrdgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavg 110
                      i G++   ++ ++s+++++  +p++++qG++++L+  +++e+ +++ ++  l+v++++ +a+ +Y++lGF + g
       EGE24702.1  75 IKGYCiyqRVFENSELHRIGTHPNFQRQGVATQLMTGLIAEVMHAKCQQlLLEVRSDNtTAITLYQSLGFLRFG 148
                      557764445556669**************************999999999********************8765 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   4.7e-13   7.7e-10      22      79 ..      88     146 ..      77     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 4.7e-13
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfek 79 
                 +el  + ++p+++r+G +++l   l++e+++ + +++ll v+ +Nt++i ly++lGf  
  EGE24702.1  88 SELHRIGTHPNFQRQGVATQLMTGLIAEVMHaKCQQLLLEVRSDNTTAITLYQSLGFLR 146
                 79999*************************9899***********************65 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0     9e-13   1.5e-09      16      74 ..      77     144 ..      63     146 .. 0.72

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 9e-13
                     EEEEEEEES..TCTEEEEE-GGGTTSSHHHHHHH.H.TT...SEEEEEEEEE....THHHHHHHHHHTTE CS
  Acetyltransf_7  16 Gfialslld..aeitrlaVdpeyrgkGiGraLle.a.ae...kgiileqlel....naekaikfYeklGF 74 
                     G+++++++    e++r+ ++p+++++G++++L++ + ae    +++  ql l    ++++ai +Y++lGF
      EGE24702.1  77 GYCIYQRVFenSELHRIGTHPNFQRQGVATQLMTgLiAEvmhAKCQ--QLLLevrsDNTTAITLYQSLGF 144
                     7777666667778888*****************9743224433354..222233433349********** PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.7   4.4e+03      40      51 ..      33      44 ..      19      60 .. 0.57
   2 !   18.5   0.0   7.7e-07    0.0013      87     139 ..      95     146 ..      85     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.7
                    .STTEEEEEEEE CS
  Acetyltransf_8 40 adphsepligll 51
                    +d ++ + i+++
      EGE24702.1 33 GDAWHAQAIAEM 44
                    334444444433 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 7.7e-07
                     SSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EE CS
  Acetyltransf_8  87 geaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfek 139
                       +++ ++g++t+l++ l++ ++   ++++ ++E + +N+ ai l++++Gf +
      EGE24702.1  95 THPNFQRQGVATQLMTGLIAEVMHA-KCQQLLLEVRSDNTTAITLYQSLGFLR 146
                     4688999***************987.8************************65 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.4e-06    0.0022      45     137 ..      59     144 ..       9     145 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.4e-06
  Acetyltransf_3  45 waeeseeegygwaivlkdtgviGsvglrdleeedeeaelg.ymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                      ++++ +++  w +    t + G++ ++++ e+    el  +  +p f+++G+at  + +l+  +++    ++l  ++  +N+  i+++++lGf
      EGE24702.1  59 SKTDNSKSDIDWRM---MT-IKGYCIYQRVFEN---SELHrIGTHPNFQRQGVATQLMTGLIAEVMHAK-CQQLLLEVRSDNTTAITLYQSLGF 144
                     44444445555555...34.5688888877777...66764667899******************7666.***********************9 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.4   7.1e+03     109     119 ..      14      24 ..       5      46 .. 0.57
   2 !   15.5   0.1     9e-06     0.015      91     154 ..     101     164 ..      73     165 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.4
  Acetyltransf_4 109 qnienllaeia 119
                       +++l+ +ia
      EGE24702.1  14 SDFNYLCQKIA 24 
                     44444444444 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 9e-06
  Acetyltransf_4  91 keglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDmi 154
                      +g++ +l++ l+        ++ll e+ s+n+ +i ++++lGF   g  k+++  +++ iD +
      EGE24702.1 101 RQGVATQLMTGLIAEVMHAKCQQLLLEVRSDNTTAITLYQSLGFLRFGVRKNYYRFGNQSIDAL 164
                     46777788888886666778999**************************************976 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.4e-05     0.039     185     234 ..      92     144 ..      74     153 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
  GNAT_acetyltran 185 eidTkedyrrkgLAtivaaalileclk...rglyPsWDaaneaSvaLaekLGY 234
                       i T+++++r+g At + + li e ++   ++l  +   +n++++ L+++LG+
       EGE24702.1  92 RIGTHPNFQRQGVATQLMTGLIAEVMHakcQQLLLEVRSDNTTAITLYQSLGF 144
                      599*******************998873235566777788************9 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.9e-05     0.047      76     106 ..      90     120 ..      75     146 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.9e-05
                     EEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT CS
  Acetyltransf_9  76 vtgVavapehrgrgvlskLlaraleemreeg 106
                     +  ++++p+ +++gv+++L++ +++e+   +
      EGE24702.1  90 LHRIGTHPNFQRQGVATQLMTGLIAEVMHAK 120
                     56799*****************998865444 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.9e-05     0.095       8      34 ..      91     117 ..      89     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.9e-05
  Acetyltransf_13   8 sriWvssshRrkgiAtkLldaarenfi 34 
                      +ri ++++++r+g+At+L+  ++++++
       EGE24702.1  91 HRIGTHPNFQRQGVATQLMTGLIAEVM 117
                      7999***************98777665 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012       0.2      13      54 ..      77     117 ..      67     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
  Acetyltransf_CG  13 afleYevrkegvldfthTeVpeelrGkGiAkkLvkaalddar 54 
                      +++ Y+ r  +  +++ + +++ ++++G+A +L++  + ++ 
       EGE24702.1  77 GYCIYQ-RVFENSELHRIGTHPNFQRQGVATQLMTGLIAEVM 117
                      677776.55557899999****************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1255.42
//
Query:       EGE24703.1  [L=770]
Description: ribonuclease R [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.2e-110  367.2   0.2   1.1e-109  366.7   0.2    1.2  1  RNB           RNB domain
    1.4e-13   50.3   0.1    1.4e-13   50.3   0.1    2.1  2  OB_RNB        Ribonuclease B OB domain
    1.5e-12   47.5   0.0    3.8e-10   39.8   0.0    2.8  2  CSD2          Cold shock domain
    2.5e-10   40.5   0.0    1.3e-09   38.2   0.0    2.2  2  S1            S1 RNA binding domain
  ------ inclusion threshold ------
      0.094   12.4   0.0        6.9    6.4   0.0    2.6  2  Phage_tail_X  Phage Tail Protein X


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.7   0.2  3.1e-113  1.1e-109       1     322 [.     270     598 ..     270     602 .. 0.98

  Alignments for each domain:
  == domain 1  score: 366.7 bits;  conditional E-value: 3.1e-113
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB   1 RkdlrdllvitIdpedakdlDdAisieklpngnyelgVhIADvshyvkegspldkearkratsvyLpekvvpMLPqelsedlcSLnpgedrlalsvlid 99 
                 R+dlr+l+ itId+ed++d+DdA++ ek   gny+++V+IADvshyv+++s+ld++a+ r+tsvy+p++v+pMLP+ ls++lcSLnp+ drl++++ i+
  EGE24703.1 270 RVDLRHLPLITIDGEDSRDFDDAVYAEKRAGGNYRVVVAIADVSHYVTPQSALDQDAYARGTSVYFPHRVIPMLPEALSNGLCSLNPKVDRLCMVADIK 368
                 89***************************9********************************************************************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 100 vdekgevlsveiylsvIkskarltydevqdlleqkdeke.ekk......taedLellyelakalrkkRlkkgalefdspeikllldedkgnrielkvee 191
                 ++ +g+v+ +e+y+++++s+arlty++v+++++++++++  ++      + +++++l++l  +l ++R+++ga+ f++ e+ +++d+ +g  i++  + 
  EGE24703.1 369 LSRAGKVTGYEFYPAIMHSQARLTYNQVNAYFNDPTNETlPDElvrnsaVLKSIDTLHQLYLVLDARRENRGAMAFETAETYIKFDK-QGDIIDIVART 466
                 ************************************9998877********************************************.8999******* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 192 etkahslveelmllANelvArflseleipailriheepsnekledliklakklglk.lednsskknlqeslekleeeeaeqllselllrllkeakysse 289
                 + +ah+l+ee+mllAN+++A+f  ++e p+++r h++p+ ek + l+++ k +gl+ + ++++++++q++++++++++   +++ +llr++ +a+ys++
  EGE24703.1 467 RGDAHKLIEEMMLLANTCAANFSLKHELPVLYRNHDKPNDEKSARLHEYVKSFGLSfPSEAPTHEDYQRIIKATADRPDAISIHSMLLRSMMQANYSPD 565
                 ********************************************************98899999*********************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 290 pvgHfgLaleeYthfTSPirRYpDlvvhrllka 322
                 ++gHfgLa++eY hfTSPirRYpDl+ hr +k+
  EGE24703.1 566 NIGHFGLAYDEYSHFTSPIRRYPDLMLHRAIKD 598
                 *******************************97 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.7       4.4   1.6e+04      10      17 ..      55      62 ..      55      64 .. 0.83
   2 !   50.3   0.1   3.8e-17   1.4e-13       1      58 []      99     153 ..      99     153 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 4.4
                -EEEEECT CS
      OB_RNB 10 FGFlipde 17
                FGFl+ ++
  EGE24703.1 55 FGFLDDED 62
                9***9887 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 3.8e-17
                 EEEEE-SSS-EEEEECT.TEEEEE-HHHHTTS-TT-EEEEEEEESSSEEEEEEEEEE- CS
      OB_RNB   1 GtvrahkkGFGFlipdegkeDifippeqmkkamhGDrVlvritkgdrrgrregrvvri 58 
                 G v++++kGFGF+i d+ ++D+f++++qm+ +++GD+V++  t+   rg+ e+r++++
  EGE24703.1  99 GQVSCNPKGFGFVILDD-MPDLFLHEKQMRLVFDGDTVEAVATE--YRGKTEARIIQV 153
                 89**************8.***********************988..899999999875 PP

>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0091        33      12      50 ..     118     154 ..     110     160 .. 0.83
   2 !   39.8   0.0   1.1e-13   3.8e-10       1      74 []     173     249 ..     173     249 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0091
        CSD2  12 difipkeklkgakdGdkVvveiteypdkknpeGevievL 50 
                 d f+ +++   + dGd V +  tey +k   e+++i+v+
  EGE24703.1 118 DLFLHEKQMRLVFDGDTVEAVATEYRGK--TEARIIQVI 154
                 7788888888899************873..69******9 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 1.1e-13
        CSD2   1 FVvpddkrlkqdifipke..klkgakdGdkVvveiteypdkkn.peGevievLGkkgdpgveilsilakhglpeeFP 74 
                 FV+    + +q i +++e  ++++a  Gd V+v +++ p+ ++ ++G+++e L   +d +  i+++l+++g+p+eF+
  EGE24703.1 173 FVQLSGANAHQPITVTAEnvQTMNAAVGDDVKVSLIDLPTYQEfATGKITELLTSLNDRELIIETTLYNYGIPHEFS 249
                 888899999*******8833455899*************97668********************************7 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.3   1.2e+04      31      57 ..     110     136 ..     101     146 .. 0.50
   2 !   38.2   0.0   3.6e-13   1.3e-09       4      55 ..     647     699 ..     645     701 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.3
                 EEEGGGSSSSCEESCHHHCEETTEEEE CS
          S1  31 fvpaselsrdarvedpdevlkvGdevk 57 
                 fv + ++++   +e+  + +  Gd+v+
  EGE24703.1 110 FVILDDMPDLFLHEKQMRLVFDGDTVE 136
                 444444444433333334444444444 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 3.6e-13
                 TTCEEEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSSCEESCHHHCEETTEE CS
          S1   4 kgevveGeVtsvtkgGafVelg.ngvegfvpaselsrdarvedpdevlkvGde 55 
                 +g+++ ++Vt vt++G+fV l+   +eg++++s+l +++ ++d+ e+  +G++
  EGE24703.1 647 IGDEFNATVTTVTNFGLFVTLDaLFIEGLIHISQLGDEYFTYDEREQKLIGER 699
                 69*********************************************999986 PP

>> Phage_tail_X  Phage Tail Protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0019       6.9       7      30 ..     131     154 ..     125     156 .. 0.86
   2 ?    3.0   0.0     0.022        78       6      38 ..     455     487 ..     451     497 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0019
                   TT-SHHHHHHHTTS--TTTHHHHH CS
  Phage_tail_X   7 qgdtlDalcwryYGrtlgvveavl 30 
                   +gdt+ a++  y G+t++ + +v+
    EGE24703.1 131 DGDTVEAVATEYRGKTEARIIQVI 154
                   9***************99887776 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.022
                   -TT-SHHHHHHHTTS--TTTHHHH.HHHSTTTTT CS
  Phage_tail_X   6 tqgdtlDalcwryYGrtlgvveav.leaNPgLAe 38 
                   +qgd +D +  r  G++ +++e+  l aN   A+
    EGE24703.1 455 KQGDIIDIV-ARTRGDAHKLIEEMmLLANTCAAN 487
                   69*****65.5889*****999861556655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 5351.59
//
Query:       EGE24704.1  [L=241]
Description: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-76  254.7   0.8    7.6e-76  254.6   0.8    1.0  1  His_biosynth     Histidine biosynthesis protein
      0.001   18.2   1.2       0.24   10.3   0.2    2.1  2  IMPDH            IMP dehydrogenase / GMP reductase domain
     0.0071   16.1   0.0        1.5    8.5   0.0    2.1  2  QRPTase_C        Quinolinate phosphoribosyl transferase, C-te
  ------ inclusion threshold ------
      0.013   15.0   0.1      0.042   13.3   0.0    1.7  2  PcrB             PcrB family
      0.015   14.6   0.1        1.1    8.6   0.1    2.2  2  TMP-TENI         Thiamine monophosphate synthase
      0.074   12.9   0.0         14    5.6   0.0    3.6  3  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
      0.087   11.8   0.8       0.28   10.2   0.2    2.0  2  FMN_dh           FMN-dependent dehydrogenase
      0.091   12.4   0.1       0.25   10.9   0.0    1.8  2  AOC_like         Allene oxide cyclase barrel like domain


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.6   0.8   3.4e-79   7.6e-76       2     228 ..       3     230 ..       2     231 .. 0.98

  Alignments for each domain:
  == domain 1  score: 254.6 bits;  conditional E-value: 3.4e-79
                   EEEEEEEETTEEEEECTTCSTCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-S.SEEEEESSSSSHHHHHHHHHCT-S CS
  His_biosynth   2 iipalDlkdGkvVrlvkGdrfqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevf.ipvqvGGGIrsledveelleagad 97 
                   iipa+DlkdG++Vrl++G++++++++  dpv++a+++ ++ga++lh+vDl++a++g ++++d+v++ia++   +p+q+GGG+rsl+++e++l ag d
    EGE24704.1   3 IIPAIDLKDGQCVRLKQGRMEDDTVFGSDPVAMASQWVAQGARRLHLVDLNGAFDGVPVHKDVVTAIAKAHPqLPIQLGGGVRSLSTIEHYLAAGLD 99 
                   9*******************************************************************99756************************ PP

                   EEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEECEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHHHHHHSSEE CS
  His_biosynth  98 kviigtaavknpelikelaekfgsqkivvaiDarrgykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkelaeavkipv 194
                    +iigt+av+ pe+++e++++f + +i+v+iDa++g  va++gw + t+++a+elak+++++g+++i++tdi++dG+++G+++e+t ela++  +pv
    EGE24704.1 100 FIIIGTKAVEAPEFVEEACREFAG-HIIVGIDAKDG-MVATHGWANVTDIKATELAKRFANAGVSSIVYTDIAKDGMMQGVNIEQTVELASFSGLPV 194
                   ************************.***********.************************************************************ PP

                   EEESS--SHHHHHHHHHTTC..SEEEESHHHHTTSS CS
  His_biosynth 195 iasGGvgsledlkelksegv..davivgsalyegel 228
                   iasGGv++l+d+ +lk  g    ++i+g+a+yeg+l
    EGE24704.1 195 IASGGVTNLDDIVALKPYGDylLGAITGRAIYEGTL 230
                   ****************8777678**********986 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0017       3.8     198     237 ..      67     105 ..      56     118 .. 0.77
   2 !   10.3   0.2   0.00011      0.24     175     223 ..     160     207 ..     144     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0017
                 HHHHHHCTC.T-EEEEES---SHHHHHHHHHTT-SEEEESC CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 198 evaeaakka.gvpviaDGGikysgdivkAlaaGadavmlGs 237
                 ++   ak + + p+   GG+++   i   laaG d++++G 
  EGE24704.1  67 TAI--AKAHpQLPIQLGGGVRSLSTIEHYLAAGLDFIIIGT 105
                 332..333337999999**********************97 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00011
                 S-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 175 GpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdiv 223
                 G  si  t + a  G+ q   + +++e a+  g pvia GG+++  div
  EGE24704.1 160 GVSSIVYTDI-AKDGMMQGVNIEQTVELASFSGLPVIASGGVTNLDDIV 207
                 5567777765.4569*******************************997 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00069       1.5     115     160 ..      63     109 ..      54     113 .. 0.87
   2 !    5.7   0.0    0.0052        12      86     152 ..     146     216 ..     114     226 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00069
                 HHHHHHHHHHSTTSEEEEESS-.-TTTHHHHHCTT-SEEEECHHCHT CS
   QRPTase_C 115 kkaveelkeknkrvlievSGgv.tlenveeyaksgvdvisvgalths 160
                 k++v+ + ++++++ i+  Ggv +l ++e+y   g+d+i +g+   +
  EGE24704.1  63 KDVVTAIAKAHPQLPIQLGGGVrSLSTIEHYLAAGLDFIIIGTKAVE 109
                 788999999999**********669*****************87655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0052
                 EESSHHHHHHHHHHT-S.EEEEES--HHHHHHHHHHHHHHSTT....SEEEEESS--.TTTHHHHHCTT-SEE CS
   QRPTase_C  86 evesleeleevleaead.iimLDnfsveelkkaveelkeknkr....vlievSGgvt.lenveeyaksgvdvi 152
                 +++  e +++ ++a+++ i+  D  +  +  + v++ +  +      + + +SGgvt l+++ +++ +g d++
  EGE24704.1 146 DIKATELAKRFANAGVSsIVYTDIAKDGM-MQGVNIEQTVELAsfsgLPVIASGGVTnLDDIVALKPYG-DYL 216
                 56677778888888865155555544443.3444433333333345689999***96479999998888.654 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.9e-05     0.042     162     218 ..      57     117 ..      30     125 .. 0.81
   2 ?   -0.6   0.1      0.32   7.2e+02     162     203 ..     172     214 ..     115     235 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
                 TTSSS-HHHHHHHHHHHSSSEEEEESS--SHHHHHHHHCC.SSEEEE-CHHHHHH...HCH CS
        PcrB 162 sGaledveevialkkklekarlivGGGirsaEkAkevvea.ADvivvGnvveekd...erk 218
                  G++ + + v a+ k   +  +  GGG+rs  + ++++ a  D i++G+   e +   e++
  EGE24704.1  57 DGVPVHKDVVTAIAKAHPQLPIQLGGGVRSLSTIEHYLAAgLDFIIIGTKAVEAPefvEEA 117
                 799999999*******************************99******9877776344444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.32
                 TTSSS-H..HHHHHHHHHHSSSEEEEESS--SHHHHHHHHCCSS CS
        PcrB 162 sGaledv..eevialkkklekarlivGGGirsaEkAkevveaAD 203
                  G ++ v  e++++l +  ++  +i  GG+ + ++      + D
  EGE24704.1 172 DGMMQGVniEQTVEL-ASFSGLPVIASGGVTNLDDIVALKPYGD 214
                 444444322333333.3455555666666665555555555555 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.012        27      14      42 ..      85     113 ..      50     123 .. 0.62
   2 ?    8.6   0.1   0.00048       1.1     118     161 ..     157     202 ..     133     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.012
    TMP-TENI  14 ellevveealkggvtlvqlRekeldarel 42 
                 + l+++e+ l++g +++ +  k  +a e+
  EGE24704.1  85 RSLSTIEHYLAAGLDFIIIGTKAVEAPEF 113
                 33445555555555555555555555555 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00048
    TMP-TENI 118 dYigvGpifpTdtKkda..eplgleglkelaealeiPvvaiGGitl 161
                    gv++i  Td  kd   + +++e+  ela+ + +Pv+a GG+t 
  EGE24704.1 157 ANAGVSSIVYTDIAKDGmmQGVNIEQTVELASFSGLPVIASGGVTN 202
                 44677888888876666377777888888888888********984 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.006        14      13      25 ..      35      47 ..      32      53 .. 0.86
   2 ?    0.3   0.0      0.27   6.1e+02      13      25 ..     152     164 ..     143     172 .. 0.88
   3 ?    0.7   0.0      0.21   4.7e+02      21      30 ..     199     208 ..     195     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.006
  DNA_pol_lambd_f 13 tAkkwyakGirtl 25
                      A++w+a+G r l
       EGE24704.1 35 MASQWVAQGARRL 47
                     69*********88 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.27
  DNA_pol_lambd_f  13 tAkkwyakGirtl 25 
                       Ak++ ++G+ ++
       EGE24704.1 152 LAKRFANAGVSSI 164
                      599******9987 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.21
  DNA_pol_lambd_f  21 Girtledlra 30 
                      G+++l+d++a
       EGE24704.1 199 GVTNLDDIVA 208
                      99******99 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00013      0.28     251     305 ..      56     109 ..      53     154 .. 0.86
   2 ?   -1.5   0.0      0.43   9.6e+02     271     287 ..     191     207 ..     172     210 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
                 STT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHH CS
      FMN_dh 251 ldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpfly 305
                 +dg+p   dv  +i++a + ++++ + gG+r+ s +   la G d++++G +++ 
  EGE24704.1  56 FDGVPVHKDVVTAIAKAHP-QLPIQLGGGVRSLSTIEHYLAAGLDFIIIGTKAVE 109
                 689999999999**99998.9*****************************88765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.43
                 SS-EEEESS--SHHHHH CS
      FMN_dh 271 rievlvDgGirrGsDvl 287
                  ++v+++gG+++  D++
  EGE24704.1 191 GLPVIASGGVTNLDDIV 207
                 5899******9999987 PP

>> AOC_like  Allene oxide cyclase barrel like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.7     6e+03      63      81 ..       7      27 ..       6      37 .. 0.64
   2 ?   10.9   0.0   0.00011      0.25      63      88 ..     129     154 ..     114     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.7
                EEETTEE.EEE.EEEEEHHHH CS
    AOC_like 63 itleDGt.irv.aGlvdltal 81
                i l+DG+ +r  +G +++  +
  EGE24704.1  7 IDLKDGQcVRLkQGRMEDDTV 27
                678888876642466655555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
                 EEETTEEEEEEEEEEHHHHHTT-EEE CS
    AOC_like  63 itleDGtirvaGlvdltaltagewat 88 
                 i  +DG + + G++++t+++a e a+
  EGE24704.1 129 IDAKDGMVATHGWANVTDIKATELAK 154
                 6679*****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1854.01
//
Query:       EGE24705.1  [L=450]
Description: Na(+)-translocating NADH-quinone reductase subunit A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-99  330.6   0.0      8e-99  330.2   0.0    1.1  1  NQRA             Na(+)-translocating NADH-quinone reductase s
    6.2e-21   74.8   0.6    1.3e-20   73.8   0.6    1.6  1  NQRA_SLBB        NQRA C-terminal domain
    7.4e-06   25.8   0.1    1.3e-05   25.1   0.1    1.4  1  RnfC_N           RnfC Barrel sandwich hybrid domain
     0.0046   16.7   0.9      0.027   14.3   0.1    2.3  2  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.084   12.7   0.1       0.18   11.7   0.1    1.5  1  Biotin_lipoyl    Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> NQRA  Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.2   0.0  2.2e-102     8e-99       1     257 []       1     260 [.       1     260 [. 0.96

  Alignments for each domain:
  == domain 1  score: 330.2 bits;  conditional E-value: 2.2e-102
        NQRA   1 mikikkGldlpikGapeqeiedakavkkvallgedyvglkpklkvkegdkVkkGqvlfedKknpgvlftspasGevveinrGekRvlqsvvievdgd.. 97 
                 mi+ikkGldlpi+G+p+++i + ++++kval+g dyvg++p+++vkegdkV+kGqvl+edKk+ gvl+t+p+ G+vv++nrGe+Rv++s+vi+vd +  
  EGE24705.1   1 MITIKKGLDLPITGEPSKQI-SEHTPTKVALVGYDYVGMRPTMHVKEGDKVTKGQVLYEDKKRAGVLYTAPVGGTVVAVNRGERRVFESLVIAVDPNas 98 
                 8*******************.678899********************************************************************8766 PP

        NQRA  98 eeeefekfskkelaslsreevkeqLlksGlwtalrtrPfskvaapdsepkaifvsamdtnPlaadpeviikeeeeafqaglkvlskLtegkvhvckkk. 195
                 ee++f+++++++l+ l+r++v+eqL++sG wtalrtrPfs++++++s p+aifv+a+dtnPla dp++++ ee +af++gl++ls+L++ k++vc+ + 
  EGE24705.1  99 EEITFNAYRSEDLSMLDRKTVVEQLVASGEWTALRTRPFSRTPEINSIPSAIFVTATDTNPLAVDPATVLFEEIQAFNDGLAILSTLSP-KTYVCHGDi 196
                 999*************************************************************************************9.59***9862 PP

        NQRA 196 ..eaalplaelekvelhefsGphPaglvgthihfidpvskektvwtisyqdviaiGklfltGel 257
                   e+ +++a+ ++  ++ f+G+hPag++gthihf++p  +++ vwti+yqdviaiGklf+tG++
  EGE24705.1 197 vpETLSKTADGNDTIYEGFTGVHPAGNAGTHIHFLHPLARGSLVWTINYQDVIAIGKLFTTGRI 260
                 2255566669999*************************************************85 PP

>> NQRA_SLBB  NQRA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.6   3.5e-24   1.3e-20       2      49 ..     266     313 ..     265     315 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 3.5e-24
   NQRA_SLBB   2 iAlaGpavkkprlvrtrlGaslsdllagelksgevRvISGsVLtGrkv 49 
                 i+laGpav++prlvrt+ Ga+l++l++gel+ +++RvISGsVL+Gr++
  EGE24705.1 266 ISLAGPAVANPRLVRTTRGADLTELTQGELNGDDNRVISGSVLSGRTA 313
                 9*********************************************97 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   3.6e-09   1.3e-05      21      82 ..      20      80 ..       2      95 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.6e-09
      RnfC_N 21 ieklplpkelvlplsqhiGapakplvkvgdkVlkGqkiaeaegfvsapvhasvsGtVkaiek 82
                i++ + p+++ l     +G++ ++ vk+gdkV+kGq++ e ++   +   a+v GtV+a++ 
  EGE24705.1 20 ISE-HTPTKVALVGYDYVGMRPTMHVKEGDKVTKGQVLYEDKKRAGVLYTAPVGGTVVAVNR 80
                444.4566666666778**************************8899999*********986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   7.5e-06     0.027      17      32 ..      43      58 ..      41      62 .. 0.92
   2 ?   -0.1   0.1      0.23   8.3e+02       7      17 ..      69      79 ..      68      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.5e-06
  Biotin_lipoyl_2 17 nVkdGqrVkaGdvLae 32
                     +Vk+G+ V +G+vL+e
       EGE24705.1 43 HVKEGDKVTKGQVLYE 58
                     8*************96 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.23
  Biotin_lipoyl_2  7 apvsGrVaqln 17
                     apv G+V+++n
       EGE24705.1 69 APVGGTVVAVN 79
                     89*******98 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     5e-05      0.18      18      55 ..      41      77 ..      27      88 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5e-05
                   SESSSTTCEE-TTSEEEEEECTTEEEEE..EBSSSEEEEE CS
  Biotin_lipoyl 18 evlvkvGdkVkagqvlaeveamKmemei..eapkaGvvke 55
                   +++vk+GdkV++gqvl e   +K    +  +ap+ G+v+ 
     EGE24705.1 41 TMHVKEGDKVTKGQVLYE---DKKRAGVlyTAPVGGTVVA 77
                   689************987...3333333225666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3641.32
//
Query:       EGE24706.1  [L=410]
Description: Na(+)-translocating NADH-quinone reductase subunit B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     4e-109  364.6  21.8   6.3e-109  363.9  21.8    1.3  1  NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family


Domain annotation for each model (and alignments):
>> NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.9  21.8  3.5e-113  6.3e-109       3     291 ..      43     396 ..      41     397 .. 0.98

  Alignments for each domain:
  == domain 1  score: 363.9 bits;  conditional E-value: 3.5e-113
  NQR2_RnfD_RnfE   3 sssphvrdkestkrimldvliallpallfgvynfglqa........................................lllilvavvvavlaEvl 57 
                      s++hvrd+ ++krim++v+++++pa+++g+yn+g+qa                                        l++++v+++v++l+E++
      EGE24706.1  43 YSASHVRDGVDLKRIMITVWLCTFPAMFWGMYNVGFQAlsaiqamgitpegwrtiitnmagydpnsiwasfvygamqfLPIYAVTFAVGILWEII 137
                     5789******************************************************************************************* PP

  NQR2_RnfD_RnfE  58 faklrkkevkvtdlsavvtglLlalilPptlplwvvvigsvfaivvvKelfGGlGqNifNPAlvgrafllisfpaqmt....wva.DavsgatpL 147
                     fa +r++ev   +++++vt++L+al+lPp++plw+v++g++f++vv+Ke+fGG+G+N++NPAl+grafl++s+pa m+    w+a D++sgatpL
      EGE24706.1 138 FAVVRGHEV---NEGFFVTSVLFALSLPPDIPLWQVALGITFGVVVAKEVFGGTGKNFLNPALAGRAFLYFSYPAYMSgdaiWTAvDGFSGATPL 229
                     *********...********************************************************************999988********* PP

  NQR2_RnfD_RnfE 148 aalk..............saslldlflgniagsigetsalalllgglyLlvrkiiswripvsvlatvavlsllfn........llaapplfhlls 220
                     + ++              + +++d+flgn++gsige+s+la+l+g++ Ll+++i+swr++++ +++++v++llfn        ++++p+ +hl++
      EGE24706.1 230 GLAAigvspdqfvdaygqTITWMDAFLGNMQGSIGEVSTLAILIGMVGLLWTRIASWRVIAGSVIGLVVTALLFNvfgsdknvMMSLPAHWHLVI 324
                     *88899999998887764389**************************************************************999********* PP

  NQR2_RnfD_RnfE 221 GglllgafFmatdpvtspitkkGklifglliGlltvliRvfg.aypeGvafaiLlmNllvplidkltrprnf 291
                     Gg+++ga+Fmatdpv+++ t+ G++++glliG++tv +Rv + a+peG+++aiL++Nl++pl+d++++++n+
      EGE24706.1 325 GGFMFGAVFMATDPVSAAHTNIGRWCYGLLIGVMTVAVRVANpAFPEGIMLAILFANLFAPLFDYFVTQANI 396
                     ********************************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3237.25
//
Query:       EGE24707.1  [L=269]
Description: Na(+)-translocating NADH-quinone reductase subunit C [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-18   66.9   0.0    9.1e-18   64.6   0.0    2.0  2  FMN_bind  FMN-binding domain


Domain annotation for each model (and alignments):
>> FMN_bind  FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.1   1.8e+03      16      35 ..      97     115 ..      89     145 .. 0.62
   2 !   64.6   0.0   5.1e-22   9.1e-18       1      68 [.     153     246 ..     153     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.1
                 TSBEEEEEEEESSS-TTT.GG CS
    FMN_bind  16 dgtItgievlehsETpgl.gs 35 
                 d  + +++v + + Tp l  s
  EGE24707.1  97 D--VNSYNVSKAARTPSLsTS 115
                 5..888888888899998433 PP

  == domain 2  score: 64.6 bits;  conditional E-value: 5.1e-22
                 SSSSEEEEEEEEETTTS.BEEEEEEEESSS-TTTGGG........................CTTHHHH..SSEEETCTTBHHHHHHHHHHHHHHH CS
    FMN_bind   1 Gyggtikvlvtvkdgdg.tItgievlehsETpglgsk........................avkkdgg..dqevDaiSGATissravkdavnaal 68 
                 G++g+i +l+t+ d+d  tI+g+++++h+ETpglgs+                        av k+g   ++++D+iSGAT++ r+v++ ++ ++
  EGE24707.1 153 GLWGPIFGLLTL-DKDLnTIKGVNFYQHKETPGLGSRieeaqwqatwvdkelynddgsrkiAVVKSGTarESQIDGISGATLTIRGVNNLLQYWI 246
                 99**********.76766****************99779999988877776666555443324444336789*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2024.23
//
Query:       EGE24708.1  [L=223]
Description: Na(+)-translocating NADH-quinone reductase subunit D [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-60  202.7  16.2    4.9e-60  202.5  16.2    1.0  1  Rnf-Nqr   Rnf-Nqr subunit, membrane protein


Domain annotation for each model (and alignments):
>> Rnf-Nqr  Rnf-Nqr subunit, membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5  16.2   2.7e-64   4.9e-60       3     173 ..       6     191 ..       4     192 .. 0.98

  Alignments for each domain:
  == domain 1  score: 202.5 bits;  conditional E-value: 2.7e-64
                 HHHHHHHHHTS-TTTTT--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHT------THHHHHHHHHH CS
     Rnf-Nqr   3 killsgilkeNpvlvqflGiCpflavskklknalgmglavtfvlvlsnlvisllrklipkklriivfilviAalvtlvelvlkaflpslykaLgiflpL 101
                 +il+++i+++Np+  q+lGiC++lav++++ nal+m++a+t+v+++s+++is++r+ ip+++riiv++++iA+lv++v+++l+af+++++++L++f++L
  EGE24708.1   6 SILTTPIFNNNPIALQILGICSALAVTTSVANALVMCIALTLVTAFSSFFISIIRNKIPSSIRIIVQMVIIASLVIVVDQILQAFAYEISRSLSVFVGL 104
                 799************************************************************************************************ PP

                 HHS-HHHHHHHHT--------THHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSS................-----SHHHHHHHHHHH CS
     Rnf-Nqr 102 ivvNCiilgraeafasknsvleslldglgsglGftlalvllaairellgkGtlig...............lilagllagaFlglggl 173
                 i++NCi++graeafa++n++++s+ldg+g+glG+ ++l+++a++re++g+G+++g               + l++l++ +F++++g+
  EGE24708.1 105 IITNCIVMGRAEAFAMSNPPIPSFLDGIGNGLGYSAVLIFVATVREVIGNGSWFGitllekiteggwyipNGLLLLPPSSFFVIAGF 191
                 ************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1801.30
//
Query:       EGE24709.1  [L=202]
Description: Na(+)-translocating NADH-quinone reductase subunit E [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-58  196.9  15.4    2.7e-58  196.8  15.4    1.0  1  Rnf-Nqr   Rnf-Nqr subunit, membrane protein
  ------ inclusion threshold ------
      0.055   13.2   2.4       0.55   10.0   0.2    2.9  2  DUF5516   Family of unknown function (DUF5516)
      0.085   12.9   2.0        2.9    8.0   0.1    2.9  3  DUF2456   Protein of unknown function (DUF2456)


Domain annotation for each model (and alignments):
>> Rnf-Nqr  Rnf-Nqr subunit, membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.8  15.4   4.6e-62   2.7e-58       1     173 [.       4     200 ..       4     201 .. 0.98

  Alignments for each domain:
  == domain 1  score: 196.8 bits;  conditional E-value: 4.6e-62
                 --HHHHHHHHHTS-TTTTT--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHH------...............---HHHHHHHHHHHHHHHHHHT CS
     Rnf-Nqr   1 llkillsgilkeNpvlvqflGiCpflavskklknalgmglavtfvlvlsnlvisllrklipk...............klriivfilviAalvtlvelvl 84 
                 +++++++++++eN++l+ flG+C+flavskk+++a+g+g+av++v+++   ++ ll+++++k               +l ++++i+ iAa v+++e++l
  EGE24709.1   4 YVSLFITSVFIENMALAFFLGMCTFLAVSKKVSTAIGLGVAVIAVMAICVPLNNLLYQFLLKdgalawagypnvdlsFLGLLSYIALIAATVQILEMFL 102
                 5789*********************************************************************************************** PP

                 ------THHHHHHHHHHHHS-HHHHHHHHT-----.---THHHHHHHHHHHHHHHHHHHHHHHHHHT........S-SSS.-----SHHHHHHHHHHH CS
     Rnf-Nqr  85 kaflpslykaLgiflpLivvNCiilgraeafaskn.svleslldglgsglGftlalvllaairellg........kGtliglilagllagaFlglggl 173
                 ++f+psly+aLg+flpLi+vNC+i+g +++++ +  +++es+++g+gsglG++la+ +la+ire+l+        +G+ i++i++gl++++F+ +gg+
  EGE24709.1 103 DKFVPSLYNALGVFLPLITVNCAIMGGVLFMVERDyNFGESIVYGIGSGLGWALAISALAGIREKLKysdvpaplRGLGITFITVGLMSLGFMSFGGM 200
                 ********************************7779************************************************************98 PP

>> DUF5516  Family of unknown function (DUF5516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2     0.035   2.1e+02       6      17 ..      38      49 ..      33      53 .. 0.77
   2 ?   10.0   0.2   9.1e-05      0.55       6      27 ..     177     198 ..     175     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.035
     DUF5516  6 ligLGlgVLGVg 17
                 igLG+ V+ V 
  EGE24709.1 38 AIGLGVAVIAVM 49
                589999998875 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 9.1e-05
     DUF5516   6 ligLGlgVLGVgLISWGlWdla 27 
                 l+gLG+  + VgL+S G   ++
  EGE24709.1 177 LRGLGITFITVGLMSLGFMSFG 198
                 89*************9987776 PP

>> DUF2456  Protein of unknown function (DUF2456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.32   1.9e+03      30      43 ..      17      30 ..       4      62 .. 0.54
   2 ?    8.0   0.1   0.00049       2.9      19      68 ..      94     143 ..      84     152 .. 0.89
   3 ?    3.7   0.0     0.011        63      44      71 ..     153     176 ..     142     191 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.32
     DUF2456 30 airglllsviiflv 43
                ++ +++l++++fl+
  EGE24709.1 17 MALAFFLGMCTFLA 30
                33444444444433 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00049
     DUF2456  19 lvnfiewlvskairglllsviiflvlWpvtigilagigkklgsdyyfnnt 68 
                  v+++e+++ k++ +l  ++ +fl l  v  +i++g+   +  dy+f + 
  EGE24709.1  94 TVQILEMFLDKFVPSLYNALGVFLPLITVNCAIMGGVLFMVERDYNFGES 143
                 57789999*****************************999999****986 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.011
     DUF2456  44 lWpvtigilagigkklgsdyyfnntwap 71 
                  W ++i  lagi +kl+    + +++ap
  EGE24709.1 153 GWALAISALAGIREKLK----YSDVPAP 176
                 5************9999....6666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1589.84
//
Query:       EGE24710.1  [L=411]
Description: Na(+)-translocating NADH-quinone reductase subunit F [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-16   60.4   0.0    3.9e-16   59.7   0.0    1.4  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    3.1e-12   46.7   0.0      1e-10   41.8   0.0    2.3  2  FAD_binding_6  Oxidoreductase FAD-binding domain
    8.1e-11   41.7   0.6    1.4e-10   41.0   0.6    1.3  1  Fer2           2Fe-2S iron-sulfur cluster binding domain
     0.0014   18.8   0.0       0.02   15.0   0.0    2.1  2  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
      0.061   13.5   0.0      0.089   13.0   0.0    1.3  1  FAD_binding_9  Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   1.1e-19   3.9e-16       1     107 [.     281     390 ..     281     392 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 1.1e-19
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTT.EEEEEEEESSCTTTSSSEESSHHHHHHHHHHH..HSSTTE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpg.rlkvvavvsreeagweggkgrvqdalleells..lkkeet 93 
                    +i+gG G+aP+rs +   l++ k ++k+ + yG+r++++++y e+ + la++ ++ + +v     ++e++weg +g++++ l e++l+     e++
     EGE24710.1 281 FIGGGAGMAPMRSHIFDQLKRLKSTRKISFWYGARSKREMFYVEDYDGLAEEFDNfEWHVALSDPQPEDNWEGYTGFIHNVLYENYLKdhPAPEDC 376
                    79***********9999999999********************************554444449999********************98867899* PP

                    EEEEECSHHHHHHH CS
  NAD_binding_1  94 hvyvCGppgMikav 107
                     +y+CGpp M +av
     EGE24710.1 377 EFYMCGPPVMNAAV 390
                    **********9876 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.053   1.9e+02       2      41 ..     137     175 ..     136     193 .. 0.82
   2 !   41.8   0.0   2.9e-14     1e-10      43      97 ..     206     270 ..     196     271 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.053
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlk 41 
                    ++++++ +v   ++ +++k+p e +++ +++G +v+l+++
     EGE24710.1 137 CEVISNDNVATFIKELTLKIP-EGEVVPFRAGGYVQLEAP 175
                    788899999999999******.7778**********9998 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 2.9e-14
                    TTCCEEEEEE.BSSTTECCEEEEEEE--..........TT-HHHHHHHCS-TT-EEEEEEEE-SE CS
  FAD_binding_6  43 kgeaviRsYtpissenekGelellvkvy..........pgGkmsqaLdelkigdtleikGPlGkf 97 
                     +e viR+Y++++ ++ekG +++ +++           p Gkms++  +lk+gd+++++GP+G+f
     EGE24710.1 206 VDEPVIRAYSMANYPEEKGIIKFNIRIAsppprapesiPPGKMSSYVFSLKPGDKITVSGPYGEF 270
                    46789**********************************************************99 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.6   3.9e-14   1.4e-10       9      78 .]      48     118 ..      41     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 3.9e-14
                 EEEEETTTHBHHHHHHHTTTTTSTTSSSSSS.SSTTEEEEEESCE...CTT.SSSSTHHHHHTTEEEEGGGSEES CS
        Fer2   9 evevadgettlldaaeenggidipysCgggg.CgtClvevlegev...qsd.etelegeeldegklrlaCqtivt 78 
                  v+ ++g++ ll+ + +  gi +  +Cgggg Cg C+++v+eg     + +   +++ge +    +rlaCq+ v+
  EGE24710.1  48 DVVTPAGGK-LLQTLANE-GIFLSSACGGGGtCGQCRCKVTEGGGsilPTEeGHFTQGEIR--DNMRLACQVAVK 118
                 455678999.99999877.***********************9988763335667777754..3479****9985 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.5e-06      0.02       4      50 ..     279     321 ..     277     348 .. 0.87
   2 ?    1.3   0.0     0.092   3.3e+02     136     151 ..     375     390 ..     359     394 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.5e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   4 vllvagGiGitpfisilkdllkkskkealktkkikliwvvresssle 50 
                    +++++gG G++p+ s++ d lk++k    +t+ki++    r++ ++ 
     EGE24710.1 279 MVFIGGGAGMAPMRSHIFDQLKRLK----STRKISFWYGARSKREMF 321
                    699*********************9....99****999888877665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.092
                    xxxxxxxxxxxxxxxx RF
  NAD_binding_6 136 svgvfvCGppklvkev 151
                       +++CGpp+++  v
     EGE24710.1 375 DCEFYMCGPPVMNAAV 390
                    56799*******8776 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.5e-05     0.089      33     120 ..     169     269 ..     138     270 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.5e-05
  FAD_binding_9  33 hikLllpepgqtepel..ppelteeg..lqeweelpederpvmRtYtvraldaeaeeldidfvlHgde.........gpaarwAaqAqpGdelaiv 115
                    +++L  p++  ++ ++    e++e++  ++ w+  ++ ++pv+R Y+++++ +e++ ++ ++ +   +         g  +++  + +pGd++++ 
     EGE24710.1 169 YVQLEAPPHTVHYKDFdiAKEYHEDWdnFNLWRYTSTVDEPVIRAYSMANYPEEKGIIKFNIRIASPPprapesippGKMSSYVFSLKPGDKITVS 264
                    55555555555555443355666666224568889999******************777777776555668889999******************* PP

  FAD_binding_9 116 gPgga 120
                    gP g+
     EGE24710.1 265 GPYGE 269
                    **886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3058.20
//
Query:       EGE24711.1  [L=506]
Description: catalase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.4e-185  614.3   0.9   1.2e-184  613.9   0.9    1.2  1  Catalase      Catalase
    8.8e-22   77.1   0.0    1.7e-21   76.2   0.0    1.5  1  Catalase-rel  Catalase-related immune-responsive


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  613.9   0.9  1.3e-188  1.2e-184       1     382 [.      14     395 ..      14     396 .. 0.99

  Alignments for each domain:
  == domain 1  score: 613.9 bits;  conditional E-value: 1.3e-188
                 B-TTS-B-S-SSS-EEESTTS-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--SSS CS
    Catalase   1 ttseGapvsdnqnsltagerGplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsadta 99 
                 t s+Gapv dnqns+tag+rGpll qd +l ekla f re ipeR +hAkG+ga+g+F+vt+di+++t+ak++s+vgkkt++++Rf tvage+g+ad++
  EGE24711.1  14 TMSNGAPVIDNQNSMTAGARGPLLAQDLWLNEKLADFAREVIPERRMHAKGSGAFGTFTVTHDITQYTRAKIFSEVGKKTEMFARFTTVAGERGAADAE 112
                 789************************************************************************************************ PP

                 SS--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB-HHHHHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-EEEE-T CS
    Catalase 100 RdvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlkdaamfwdflslnpeslhqvlilfsdrgipksyrhmngygvhtfklvnk 198
                 Rd+rGfa+kfyTeeGnwD+vgnntpvFf+rDp kfpdl++++kr+p+tn+++a++ wdf++l pe++hqv+i++sdrgipksyrhm+g+g+ht++++n+
  EGE24711.1 113 RDIRGFALKFYTEEGNWDMVGNNTPVFFLRDPKKFPDLNKAVKRDPRTNMRSATNNWDFWTLLPEAFHQVTIVMSDRGIPKSYRHMHGFGSHTYSFINA 211
                 *************************************************************************************************** PP

                 T--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEEEEEEEE--S- CS
    Catalase 199 egevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevGkltLnrnpen 297
                 ++e+++vkfhf+t+qg++nlt++eae + g+d+++++rdL++aie+g++p+w++yvq+m+e++a+++ ++++DlTkvwp+ ++pl+evG+++Ln+npen
  EGE24711.1 212 DNERFWVKFHFRTQQGIENLTDAEAEMVVGKDRESNQRDLFDAIERGDFPKWTMYVQIMPETDAQTVPYHPFDLTKVWPKGDYPLIEVGEFELNKNPEN 310
                 *************************************************************************************************** PP

                 HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHHHHHT-TTGGGSGGG---..---S----TT-.....S-S---SS-S-T CS
    Catalase 298 yFaevEqvafspsnlvpGiepseDklLqgRlfsYadtqryRlGvnyqqlpvNrpkakvanyqrdGamrveankgkepnYepnsle 382
                 +F +vEq af+psnlvpGi++s+D++Lq+Rlf Yad+qryRlGvn +q+pvN+p+++v ++qrdG+ rv +n+g +p+Yepns++
  EGE24711.1 311 FFLDVEQSAFAPSNLVPGISVSPDRMLQARLFNYADAQRYRLGVNRNQIPVNAPRCPVYSNQRDGQGRVGDNYGGRPHYEPNSFG 395
                 ***********************************************************999********************986 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.0   1.9e-25   1.7e-21       3      65 .]     422     483 ..     420     483 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 1.9e-25
                   GG--SSHHHHHHHHHS-HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHHHH CS
  Catalase-rel   3 dfddhfsQagllyrsmseeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVaeal 65 
                   + dd+fsQ+++l+++ms+e+k+ l+ n+a+++++++ ++i+ r++ ++ k++pd++++Va+al
    EGE24711.1 422 NDDDYFSQPRALFELMSDEQKQALFGNTARAMGDAP-DFIKYRHIRNCDKCHPDYAMGVAKAL 483
                   458********************************9.************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3805.84
//
Query:       EGE24712.1  [L=532]
Description: putative efflux pump component MtrF [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-217  723.2  33.7   1.3e-217  723.0  33.7    1.0  1  ABG_transport  AbgT putative transporter family
    4.3e-09   35.3  27.3    6.9e-09   34.7  27.3    1.4  1  DcuC           C4-dicarboxylate anaerobic carrier
  ------ inclusion threshold ------
      0.034   13.9   0.1      0.034   13.9   0.1    3.6  3  DUF21          Cyclin M transmembrane N-terminal domain
      0.041   13.1   1.0       0.17   11.1   0.2    2.6  2  DUF4141        Domain of unknown function (DUF4141)
       0.35    8.9   6.2       0.75    7.9   6.2    1.4  1  UPF0182        Uncharacterised protein family (UPF0182)


Domain annotation for each model (and alignments):
>> ABG_transport  AbgT putative transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  723.0  33.7  3.7e-221  1.3e-217       1     502 []      20     529 ..      20     529 .. 0.98

  Alignments for each domain:
  == domain 1  score: 723.0 bits;  conditional E-value: 3.7e-221
  ABG_transport   1 rlldvverlGnklPdPvllfiilivvllvasailsalglsvknpraegek.....etievknllseeglallltelvknftsfapLGlvLvvllGv 91 
                    r+l+ ve+lGn lP+Pv+lfi++ v+ll +sailsa+++ v +pr+eg+k      +i+v+nll+ egla+++ +lvknft+f pLG+vLv+llGv
     EGE24712.1  20 RFLKGVEWLGNLLPHPVVLFIWMSVILLGLSAILSAMDVAVIDPRPEGAKgraedGMIYVVNLLNGEGLAKIVENLVKNFTGFVPLGTVLVALLGV 115
                    89**********************************************99999999**************************************** PP

  ABG_transport  92 gvaersGllsallkklvrkapkklitptvvligilshtasdaayvvliPlaallfialGrhPlaGlaaafagvsggfsanlllgtlDvllagitqe 187
                    g+ae sG++sa+l+ +v++apkk++t +vv++gi+s+ta++++yvvliPlaa++f+alGrhPlaGlaaafagvsgg+sanlllgt+D+ll+gi+qe
     EGE24712.1 116 GIAEYSGMISAALRGMVMNAPKKIVTLVVVFAGIMSNTAAELGYVVLIPLAAMIFHALGRHPLAGLAAAFAGVSGGYSANLLLGTVDPLLSGISQE 211
                    ************************************************************************************************ PP

  ABG_transport 188 aariidpsykvnplanwyfiaasvvvlvlialfvtdkivePrLgkykgeeekde.keelase.lteeekkglryaglavvvviallaltviPeegi 281
                    aariidp+y v+ +anwyf++ s++++ +++++vt+kiveP Lgky+ ++++d  + +++ e l++ ekkgl +ag++++++  lla+tv+Pe+gi
     EGE24712.1 212 AARIIDPNYMVGAEANWYFMVVSTFLISALGYLVTEKIVEPSLGKYNPHDADDPtVLDNKIEqLNALEKKGLVWAGVSMLIFCLLLAWTVVPENGI 307
                    **********************************************98776664144444445********************************* PP

  ABG_transport 282 LrdeekesvaksPflksivalilllflvpglvYGivtktiknekdvvkalaesmssmgayivlvffaaqfvalfnwsnlGkilavkgaelLkeigl 377
                    Lr++e++ +a sPfl++iv++i+++f++pg++YG vt++ik+++dvv+a++++mss+++yivlvffaaqf a+fnwsnlG ++av+ga++L+eigl
     EGE24712.1 308 LRHPETGLIAGSPFLHGIVVFIFVFFAIPGYIYGKVTGSIKTNQDVVNAMSQAMSSLSMYIVLVFFAAQFTAFFNWSNLGSVMAVSGANFLNEIGL 403
                    ************************************************************************************************ PP

  ABG_transport 378 tgillllglillsalinlligsasakWavlaPifvPmlmllgisPeltqaayRigDsvtniitPlmsyfplvlalaqkykkklgiGtllslllPYs 473
                    tg+lll+g+il++al+nl++gsasa+Wa++aPif+Pmlml g++Pe++qaayRigDs+tniitP+msyf+l++a+a +ykk++g+Gtl++++lPYs
     EGE24712.1 404 TGPLLLIGFILICALVNLMLGSASAQWAITAPIFIPMLMLTGYAPEMIQAAYRIGDSTTNIITPMMSYFGLIMAVAIRYKKDTGVGTLMAMMLPYS 499
                    ************************************************************************************************ PP

  ABG_transport 474 iaflvvwvllllvwvl.lglplGpgapity 502
                    ++fl +w+ll++ wv+ +glp+Gpg++++y
     EGE24712.1 500 MIFLFGWMLLFYLWVFvFGLPVGPGSATYY 529
                    ***************989*******99887 PP

>> DcuC  C4-dicarboxylate anaerobic carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7  27.3   1.9e-12   6.9e-09     104     431 ..     124     479 ..      94     527 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.9e-12
        DcuC 104 vkalvkklkgrekllilllvvlfvlggtvlgiseetvafypiLvPvlvalGydsivavaaillatqvgilas....tinPfavviAaeiAgvsiadgiv 198
                 ++a+ + + ++    i+ lvv+f+ ++ +++ +   v+++p+ + ++ alG   + + aa +++ + g  a     t+ P  ++i++e+A +   +++v
  EGE24712.1 124 ISAALRGMVMNAPKKIVTLVVVFAGIMSNTAAELGYVVLIPLAAMIFHALGRHPLAGLAAAFAGVSGGYSANlllgTVDPLLSGISQEAARIIDPNYMV 222
                 5555555555555667777777776666666655559999999999******************99997664222389**************9999998 PP

        DcuC 199 lrllvlviltlis...iaflyfYakkikkdp..vysekdeskelfskekseseesfskrqkvvlilfvlplilvllg........lafvivng...... 278
                      +  +++      a  y   +ki +     y+ +d+++  + ++k e+ + ++k+  v + + +l + l+l          l             
  EGE24712.1 223 GAEANWYFMVVSTfliSALGYLVTEKIVEPSlgKYNPHDADDPTVLDNKIEQLNALEKKGLVWAGVSMLIFCLLLAWtvvpengiL------Rhpetgl 315
                 87777755554441103334555678877669999****************99999999999887777777766543233344441......0444444 PP

        DcuC 279 ...ewylpeiavlflamgilvefiak...lnglkekeiveafveGaaellgvalvvglargveviaeggmiidtilnlisnals..glsgivfilvmll 369
                      +l  i+v  +++  + ++i++    + ++ ++ v+a  + +++l +  ++v +a     + +   +   +   ++n+l+  gl g+++ ++ +l
  EGE24712.1 316 iagSPFLHGIVVFIFVFFAIPGYIYGkvtGSIKTNQDVVNAMSQAMSSLSMYIVLVFFAAQFTAFFNWSNLGSVMAVSGANFLNeiGLTGPLLLIGFIL 414
                 444778888888888888888999987756778889999**********88888888888888888776666666666667654227899********* PP

        DcuC 370 iqallafvvpSgsglavltmplmapLAdlvgvpralvvlafqlasgllniisPts...gvvvatl 431
                 i al++++ +S s++ ++t+p+++p+  l g  ++++  a+ +++  +nii+P+    g+++a++
  EGE24712.1 415 ICALVNLMLGSASAQWAITAPIFIPMLMLTGYAPEMIQAAYRIGDSTTNIITPMMsyfGLIMAVA 479
                 *****************************************************952346666665 PP

>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.8    0.0036        13       3      68 ..      43     118 ..      41     156 .. 0.57
   2 ?   13.9   0.1   9.4e-06     0.034      61     147 ..     232     348 ..     229     367 .. 0.87
   3 ?   -3.8   5.7       2.5   8.8e+03      52     132 ..     408     504 ..     364     518 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0036
       DUF21   3 ivlllllsaffsgaEtAlvslsrlrleelaekgk..........kkakrllkllknperlLstlligntlvnills 68 
                  v+ll+lsa++s++ +A++  ++   + +ae+g             ak++++l+kn   ++    +++ l  ++++
  EGE24712.1  43 SVILLGLSAILSAMDVAVIDPRPEGAKGRAEDGMiyvvnllngeGLAKIVENLVKNFTGFVPLGTVLVALLGVGIA 118
                 699***************9988888866666655444444222233444555555544444444444444444444 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 9.4e-06
       DUF21  61 tlvnillsalatalfvellae..........................galavviatviv.tllilvfgEilPkslalkyaekialalapplrvlmvlly 132
                  ++++l+sal+ ++ ++++++                          ++ ++v+a v +  + +l+   ++P +  l+++e+ + a +p+l+ + v+++
  EGE24712.1 232 VVSTFLISALGYLVTEKIVEPslgkynphdaddptvldnkieqlnalEKKGLVWAGVSMlIFCLLLAWTVVPENGILRHPETGLIAGSPFLHGIVVFIF 330
                 5678899999999999999999999**********************89999***99999************************************999 PP

       DUF21 133 Plvwllskllnlil...e 147
                  + ++ + +  +++   +
  EGE24712.1 331 VFFAIPGYIYGKVTgsiK 348
                 998887777777765542 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.5
       DUF21  52 lLstlligntlvnillsa.latalfvellae....................galavviat.vivtllilvfgEilPkslalkyaekialalapplrvlm 128
                 lL+  ++   lvn++l++  a+++++  +                      +      +t  i+t+++  fg i+  ++  k+   + +++a +l + m
  EGE24712.1 408 LLIGFILICALVNLMLGSaSAQWAITAPIFIpmlmltgyapemiqaayrigD------STtNIITPMMSYFGLIMAVAIRYKKDTGVGTLMAMMLPYSM 500
                 5555555556666666553444444444444566666666666554433321......33145588888888888888888888888888888777777 PP

       DUF21 129 vlly 132
                 ++l+
  EGE24712.1 501 IFLF 504
                 7764 PP

>> DUF4141  Domain of unknown function (DUF4141)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.2   4.3e+03      46      53 .]      92      99 ..      90      99 .. 0.87
   2 ?   11.1   0.2   4.8e-05      0.17       3      25 ..     413     435 ..     411     436 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.2
     DUF4141 46 asntlknF 53
                ++n++knF
  EGE24712.1 92 VENLVKNF 99
                89*****9 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 4.8e-05
     DUF4141   3 lllllalllltgkakAQWVVtDP 25 
                 +l+++++ l+ g+a+AQW++t P
  EGE24712.1 413 ILICALVNLMLGSASAQWAITAP 435
                 6899999************9977 PP

>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.2   0.00021      0.75     148     282 ..     321     452 ..     313     457 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00021
     UPF0182 148 lllalvllaliavllvyllsgesl.girl..kfaelskaarrhlsvllallllllalsywLdryellyskrgvvtGagYtdvnavlpaktilavialvv 243
                 +l ++v++++++ ++  +++g+++ +i++   + ++ ++a   ls+ ++l++++  +  +++  +l      +v+Ga++ + ++ l+  ++l+ + l++
  EGE24712.1 321 FLHGIVVFIFVFFAIPGYIYGKVTgSIKTnqDVVNAMSQAMSSLSMYIVLVFFAAQFTAFFNWSNLGSVM--AVSGANFLN-EIGLTGPLLLIGFILIC 416
                 5678899999999999999998886555566666778888888999999999999999999988887774..8******86.56666666666666777 PP

     UPF0182 244 avlllvai.vlkklklplialallvllaillgvvlpalvq 282
                 a++ l+   ++ ++ +   ++ ++ + +++l++ +p+++q
  EGE24712.1 417 ALVNLMLGsASAQWAI---TAPIF-IPMLMLTGYAPEMIQ 452
                 7666654434444422...22222.222223455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1010  (0.0563333); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 3366.31
//
Query:       EGE24713.1  [L=177]
Description: 4-hydroxyphenylacetate 3-monooxygenase reductase component [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-34  116.9   0.2    9.7e-34  116.7   0.2    1.0  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.2   5.4e-38   9.7e-34       1     154 [.      11     158 ..      11     159 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 5.4e-38
                    HTTS-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECT CS
  Flavin_Reduct   1 mrrvaqpvavvttsvpptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltwees 96 
                    m r+a+ v +vtt + +t ++g+t+s+++s++ +Pp ++++++ + ++++ + +++ +++n ls++q++l d f++   p  ++k  f++ +w+  
     EGE24713.1  11 MARLATAVHIVTT-DGDTGRHGFTASAVCSVTDSPPSLLVCMNANARSYEHFIANQILAVNTLSAEQAHLSDVFAS---P-LESKARFEHADWSVL 101
                    899**********.99************************************************************...3.457778********* PP

                    CCCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEEEESTTECTTBEECCCCCEEEE CS
  Flavin_Reduct  97 ptgapallgalasleCqvvgsvelgdhelfigeVvavkvgddadeepLlywrrryagl 154
                     tgap+l +al+s++C++    ++g+h +fi+++ a++ g+++++  L+y++r+y+++
     EGE24713.1 102 STGAPVLTDALVSFDCEIQTIQDVGTHSIFICKIIAIRKGENEKR-SLVYFDRQYHKI 158
                    ******************************************776.6********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1349.05
//
Query:       EGE24714.1  [L=344]
Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-38  130.5   0.0    2.3e-37  129.0   0.0    1.6  1  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
    0.00067   19.6   0.0     0.0014   18.6   0.0    1.5  1  CNP1         CNP1-like family
     0.0025   17.4   0.1      0.028   13.9   0.0    2.2  2  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   3.8e-41   2.3e-37       1     320 [.       6     332 ..       6     335 .. 0.89

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 3.8e-41
                  S-BB--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE- CS
  Meth_synt_2   1 lpTttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiiv 98 
                  lpT+t GS P+ + + e  + + + +++ +e  +a +++    +++q ++g+D++++ge  R+  v  f e+ldg+ f++ + v  ++      p +v
   EGE24714.1   6 LPTSTAGSLPKPSWLAEPEKLWSEWKFEGDELLQAKQDALLVSLAEQTHAGIDIVSDGEQTRQHFVTTFIEHLDGVDFNQRETVRIRNRYDASVPSVV 103
                  79**************************99999999999999*******************************************99999999999** PP

                  SS---SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSGGGHHHHHHHH CS
  Meth_synt_2  99 gdvsrpaamtvkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkkadwaayldwa 196
                  g+vsrp+ + v  ++   + tdk +k  l Gp+t+++  +     +r++ a + a  l +e+++LeaaG+ +iQ+Depa+       +       dw+
   EGE24714.1 104 GEVSRPKSVFVDDAKFLRAHTDKLIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKILNEEARELEAAGVDIIQFDEPAFNVFFDEVN-------DWG 194
                  *************************************99999999**********************************986554444.......777 PP

                  HHHHHHHHTTS-TTSEEEEEES-.......S--CCCH...........HHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--TH CS
  Meth_synt_2 197 veafrldtiaaaddtqvhtHlCy.......selndil...........saiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsm 276
                  v+   l+ ++ + + q ++H+Cy        + ++ l           +++++ ++D++++e  +s+  +   l e   g++v +G +d+ ++++++ 
   EGE24714.1 195 VA--TLERAISGLKCQTAVHICYgygikanTDWKQTLgnewrqyeesfPKLQQSKIDIVSLECQNSH--VPMDLIELIRGKTVMVGAIDVATNQIETP 288
                  75..466677777778888888743333222333444777777777779*************99999..55566666789****************** PP

                  HHHHHHHHCHHCTS-STSB-BB-SS-STTS-HHHHHHHHHHHHH CS
  Meth_synt_2 277 eeiaalikkaldvapkerlwvnPdCGLktrkreearaalknmvd 320
                  e++a++++kal+ + +++l+ + +CG++ ++r+ ar +l+   +
   EGE24714.1 289 EQVADTLRKALQFVDADKLYPSTNCGMAPLSRTVARGKLNALSE 332
                  ************************************99987765 PP

>> CNP1  CNP1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.4e-07    0.0014      68     128 ..     203     264 ..     197     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.4e-07
        CNP1  68 eGirCataerklYatgrkdnkrWikaraaeWqrieeseanrlraaLar.dyfCeekavarda 128
                  G++C+ta    Y++g k n+ W+++  +eW++ ees ++ +++++   +  C+++ v+ d 
  EGE24714.1 203 SGLKCQTAVHICYGYGIKANTDWKQTLGNEWRQYEESFPKLQQSKIDIvSLECQNSHVPMDL 264
                 79*********************************999888888875414458888777665 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.044   2.6e+02      21      61 ..      24      65 ..      18      83 .. 0.82
   2 !   13.9   0.0   4.7e-06     0.028     150     208 ..     128     185 ..     105     280 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.044
                 HHHHTT.SS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES-- CS
  Meth_synt_1 21 esywkg.kiseeeLektakeLrakhwkkqkeagidlipvndf 61
                 e+ w++ k + +eL++  ++  +  + +q++agid+++ ++ 
   EGE24714.1 24 EKLWSEwKFEGDELLQAKQDALLVSLAEQTHAGIDIVSDGEQ 65
                 677765478889999999999999999*********998775 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.7e-06
                  EEEEEE-HHHHHH.T-EETTCC.-HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGS CS
  Meth_synt_1 150 akpvllGpltflk.LskakeekveklellekLlpvYkelleeLkeagvewvqidEPalvl 208
                   k  l Gp+t +  L + + +  ++++l  ++ ++ +e  +eL++agv+++q+dEPa+ +
   EGE24714.1 128 IKWALPGPMTMIDtLYDGHYK--SREKLAWEFAKILNEEARELEAAGVDIIQFDEPAFNV 185
                  466788999988514444444..477888899999999999****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2568.75
//
Query:       EGE24715.1  [L=325]
Description: hypothetical protein EA1_07102 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-169  562.6   3.0   2.4e-169  562.4   3.0    1.0  1  DUF1852   Domain of unknown function (DUF1852)
  ------ inclusion threshold ------
      0.017   15.5   0.9        6.1    7.2   0.1    2.4  2  PRANC     PRANC domain


Domain annotation for each model (and alignments):
>> DUF1852  Domain of unknown function (DUF1852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  562.4   3.0  2.7e-173  2.4e-169       1     323 []       1     323 [.       1     323 [. 0.99

  Alignments for each domain:
  == domain 1  score: 562.4 bits;  conditional E-value: 2.7e-173
     DUF1852   1 mkkdltfsiksirfdedykPsestrittnfanlarGekrqenlrnalkmidnrfnalaewdnpkgdrysveleiisveidieaeekeeafplieilktk 99 
                 m+++++++++++rfde+y+P++str+ttnfanlarGe+r+enl+na++mi+nrfn+la+wdnp++drysv ++i+s+++d+  ++k+e+f+ +e+lkt+
  EGE24715.1   1 MTTQFQCRVHTQRFDENYEPATSTRLTTNFANLARGENRKENLQNAIRMINNRFNDLAHWDNPTNDRYSVLIDIVSIDVDV--AGKGEFFSGLEWLKTS 97 
                 7899****************************************************************************9..999************* PP

     DUF1852 100 ivdkktgkriegivGnnfssyvrdydfsvlllehnkdkaefsvPedfGdlhGklfkslvnseaykekfkkaPviclsvsssktykrtenehPvlGveyk 198
                 +vd+ktgk++ gi+Gn+fss+vrdydfsvll+e+nkdkaefsvPe +GdlhGklfk +++se+yk++ kkaPv+clsv++++ty+rt+n+hP+lGvey 
  EGE24715.1  98 VVDHKTGKTTPGIIGNSFSSFVRDYDFSVLLREYNKDKAEFSVPEGYGDLHGKLFKFMIASEEYKAHSKKAPVLCLSVATTRTYHRTTNTHPILGVEYV 196
                 *************************************************************************************************** PP

     DUF1852 199 qdelsltdeyfakmGlkvryfmPknsvaPlafyf..sgdllsdytnlelististmetfqkiyrPeiynansaagkvykpslkhqdysltkivydreer 295
                 q+++sltdeyfakmGlkvryfmP++svaP+afyf  ++dll+dytnlelisti+tme+fqkiyrPeiynans+ag++yk+sl+++dy++ k++ydr er
  EGE24715.1 197 QNDYSLTDEYFAKMGLKVRYFMPPKSVAPYAFYFdeNADLLNDYTNLELISTIATMEAFQKIYRPEIYNANSVAGQIYKGSLTYEDYAVPKVDYDRVER 295
                 **********************************8789************************************************************* PP

     DUF1852 296 sqlaveqgkfaeehfikpykeileqwsa 323
                 ++lav+qgk+aee+fikpy+eil++w a
  EGE24715.1 296 NDLAVKQGKIAEEQFIKPYQEILDAWLA 323
                 **************************75 PP

>> PRANC  PRANC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1   0.00068       6.1      47      74 ..      35      62 ..      30      74 .. 0.87
   2 ?    6.5   0.1    0.0011        10       7      59 ..     226     277 ..     221     290 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00068
       PRANC 47 sakkrykliekaievlnnicskkslWnl 74
                  ++r++++++ai+ +nn +++   W +
  EGE24715.1 35 RGENRKENLQNAIRMINNRFNDLAHWDN 62
                5689****************99888865 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0011
       PRANC   7 ydllfnknninllvrlinkkklkklkslkiYgklikkiiksakkrykliekai 59 
                 y ++f++n  +ll  + n + ++ + ++  ++k+++  i++a +   +i k +
  EGE24715.1 226 YAFYFDENA-DLLNDYTNLELISTIATMEAFQKIYRPEIYNANSVAGQIYKGS 277
                 8899****9.*************999***************998877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2347.43
//
Query:       EGE24716.1  [L=162]
Description: peptidylprolyl isomerase, FKBP-type [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-12   47.9   0.3    1.7e-12   47.4   0.3    1.3  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
      0.013   15.4   0.1      0.014   15.3   0.1    1.2  1  AbiH      Bacteriophage abortive infection AbiH


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.3     2e-16   1.7e-12       5      93 ..       4     137 ..       1     138 [. 0.78

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 2e-16
                 B-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTT.............................. CS
      FKBP_C   5 akegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYge.............................. 73 
                 ++++++V+++y+++ ++g+++d+s  r +pl    G  ++i+G+e+++ g ++G++ ++ti pe aYge                              
  EGE24716.1   4 INKDTVVQFNYTLTNAEGEILDQS--RDQPLVYLHGHHNIIPGLEKQMMGKSAGDTFKVTIAPEDAYGEyvqeavqevpranfqgvdnievgmqfqsqt 100
                 678899******************..*******************************************888888777777777777777666666666 PP

                 ....................TTBCTTTB.TTSEEEEEEEE CS
      FKBP_C  74 ....................kglaggvippnatLvFeveL 93 
                                      g  +    ++ +L F+ve+
  EGE24716.1 101 ddghvmlvtvkdvndeivvvDGN-H--PLAGVELTFDVEI 137
                 66666666665544444332222.2..3455778888876 PP

>> AbiH  Bacteriophage abortive infection AbiH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.1   1.6e-06     0.014     148     192 ..       3      61 ..       1     117 [. 0.69

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-06
        AbiH 148 nlkeasflsFNYTntle..klygissdnil.hIHGklennlilGiek.............l 192
                 +++++++++FNYT t    +++++s+d+ l ++HG+   n+i G ek             +
  EGE24716.1   3 TINKDTVVQFNYTLTNAegEILDQSRDQPLvYLHGHH--NIIPGLEKqmmgksagdtfkvT 61 
                 567899******9997523689998887556*****9..8888884433333333333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1270.28
//
Query:       EGE24717.1  [L=37]
Description: hypothetical protein EA1_07112 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 311.46
//
Query:       EGE24718.1  [L=592]
Description: M61 glycyl aminopeptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-42  143.3   0.8    8.6e-42  142.3   0.3    1.8  2  Peptidase_M61    M61 glycyl aminopeptidase
    2.6e-36  125.2   0.0    4.4e-36  124.5   0.0    1.4  1  Peptidase_M61_N  Peptidase M61 N-terminal domain
    1.5e-07   31.6   0.0      6e-07   29.7   0.0    1.9  2  PDZ_2            PDZ domain
    1.2e-05   25.5   0.0    2.5e-05   24.5   0.0    1.5  1  PDZ              PDZ domain
  ------ inclusion threshold ------
       0.13   12.1   0.0        0.3   11.0   0.0    1.6  1  PDZ_6            PDZ domain


Domain annotation for each model (and alignments):
>> Peptidase_M61  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.1   1.1e+04      93     115 ..      36      59 ..      22      61 .. 0.66
   2 !  142.3   0.3   2.4e-45   8.6e-42       2     118 .]     284     400 ..     283     400 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.1
                    IIIIITT-.-TTHHHH---TTHHH CS
  Peptidase_M61  93 awiklyrs.densanskvsyYskG 115
                    +wi      +e s+n ++ yY+ G
     EGE24718.1  36 TWIAGSYLiREFSKNITTVYYQIG 59 
                    555332222567889999999877 PP

  == domain 2  score: 142.3 bits;  conditional E-value: 2.4e-45
                    HHHHHHHHHHHTTBTTTB-BGGGSS---SS----STHHHHTHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHSGGGGT--HHHHHHTIIIII CS
  Peptidase_M61   2 llgllaHEyfHsWnvkrirPaelepfdyekenytellwvaEGlTsYygdlllarsgliseeeyleelaktlarlentpgrkvqslaessfdawikl 97 
                    +lgl++HEyfH+W vk ++P+ +++  +++e yt llwv+EG+TsY++dl+l+ sg+i++++yl+ ++++++r+++t+g  +qs+aessfdawikl
     EGE24718.1 284 FLGLCSHEYFHAWWVKTVKPDVMMNNTLTEEAYTPLLWVFEGFTSYIDDLMLLVSGVIDKSSYLKLITAQINRYQQTEGLLHQSVAESSFDAWIKL 379
                    899********************************************************************************************* PP

                    TT--TTHHHH---TTHHHHHH CS
  Peptidase_M61  98 yrsdensanskvsyYskGalv 118
                    yr+den++n+ +syY+kGalv
     EGE24718.1 380 YRTDENTNNQGISYYNKGALV 400
                    *******************97 PP

>> Peptidase_M61_N  Peptidase M61 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.0   1.2e-39   4.4e-36       1     167 []       4     183 ..       4     183 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 1.2e-39
  Peptidase_M61_N   1 kytvdltdpqrhlveveltipakkgeltlslPkwiPGsYlirdfaknieglkafd..akgkelaveridkntwrvenpk..keveveyrvyafd 90 
                      +y+++++++++hl++++++ +a +++  +s+ +wi+GsYlir+f+kni+++ + +  ++  + + e+idk+t+ ++n+k  ++++++y+vy++d
       EGE24718.1   4 NYHISFERFNEHLADIRIHHTALSDTPAFSMVTWIAGSYLIREFSKNITTVYY-QigDSLIRHRAEKIDKKTFVLPNAKqgDDITIHYEVYCRD 96 
                      6****************************************************.5124447888999**********9989************* PP

  Peptidase_M61_N  91 lsvrtsylddehaflngaslflyvegleekpievtlslpkg.......wkvataLpaaeeda...gtgtfeaedydeLvDsPvlaGk 167
                      lsvrt+++d++++f n++sl+l +e  ++++ ++tl +pk+       +++a++L+ +++++     ++f+     e +D P+++G+
       EGE24718.1  97 LSVRTAFVDATRIFGNFTSLLLLPEANKQTQANITLFVPKTflanhlkCTIACGLKFEQTSTsdgLEYRFNGLAAFEYFDFPFEIGN 183
                      **********************************************************99888767799999999***********7 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.5   5.3e+03      58      70 ..      79      91 ..      67     101 .. 0.78
   2 !   29.7   0.0   1.7e-10     6e-07       4      80 ..     491     565 ..     488     566 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.5
                TS-TT-EEEEEEE CS
       PDZ_2 58 kkkpGdtVkltvl 70
                ++k+Gd++++ ++
  EGE24718.1 79 NAKQGDDITIHYE 91
                7899999999987 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 1.7e-10
                 .XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHH.TS-TT-EEEEEEEETTEEEEEEE CS
       PDZ_2   4 GvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislll.kkkpGdtVkltvlRdgkkktvev 80 
                 G+s+ ++    g+++++V  ++ a+ agl  +D+i+++dg k  +++ l++l+  +   G+ +++  +R+++ +++++
  EGE24718.1 491 GISFNEHAH--GLTITHVSRQSAASHAGLSYDDTIIAIDGLKA-TSALLNRLVKhQNTTGSPLTVHAFRRDELLSFTI 565
                 899999998..*******************************9.777888888877889*************999887 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   6.9e-09   2.5e-05       8      79 ..     486     552 ..     479     554 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 6.9e-09
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEE CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtL 79 
                 +++ +G+s  +      ++g+ +++v++ +aa  +gl+ +D I++++g + ++  + + v+    +++++t+
  EGE24718.1 486 KHKTWGISFNEH-----AHGLTITHVSRQSAASHAGLSYDDTIIAIDGLKATSALLNRLVKHQNTTGSPLTV 552
                 788888888873.....45*****************************998888888888877777776665 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.3e-05       0.3       2      28 ..     503     529 ..     502     536 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.3e-05
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGq 28 
                 +t V   s A +AGl   D+i++++G 
  EGE24718.1 503 ITHVSRQSAASHAGLSYDDTIIAIDGL 529
                 778999*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4412.56
//
Query:       EGE24719.1  [L=250]
Description: ribosomal large subunit pseudouridine synthase E [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-14   51.7   0.5    2.1e-13   50.7   0.1    1.9  2  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.1   1.2e-17   2.1e-13       2     160 .]       4     162 ..       3     162 .. 0.79
   2 ?   -3.2   0.1      0.45     8e+03       6      17 ..     212     223 ..     210     237 .. 0.62

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.2e-17
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakaf......eerk.vrKkYlalvfgap 88 
                      lv++nKP+gv++q ++       ++       +  + k  ++ +RLDk+++Gllll++++ + ++ +          +++ + K+Yl+ v+   
       EGE24719.1   4 LVLFNKPYGVHSQFKK-------DHDGMITLADFIDDKTMRVAGRLDKDSEGLLLLTDNGRLNHAITTPPtaknakDKYTkCAKTYLVQVE--- 87 
                      899*************.......7777778888889999*******************998888877655666666444449999999994... PP

  PseudoU_synth_2  89 eeeegaikkkiskdtekqegarrkaeeldgkkavtylkvlksgs.............seksakvslveleletGrkhQiRvhlaa 160
                         + a++ +i+          + +  +dgk   +++++l++               +  + +++++++++++G+++QiR++ a+
       EGE24719.1  88 ---NIATNVQIQ-------ALEQGVMLKDGKTLPAKVQKLDENElpirlwqrnppvrQRVNIPTTWLKITIVEGKNRQIRRMVAH 162
                      ...333333333.......35555667777777777777777777777888888999999**********************986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.45
  PseudoU_synth_2   6 nKPagvpvqpea 17 
                      nKP ++++++++
       EGE24719.1 212 NKPTNLISSNTK 223
                      667666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1954.20
//
Query:       EGE24720.1  [L=551]
Description: OmpA family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-22   78.4   0.7    1.5e-21   76.6   0.3    2.1  2  OmpA      OmpA family
  ------ inclusion threshold ------
      0.065   12.9   0.0       0.18   11.5   0.0    1.8  1  GntR      Bacterial regulatory proteins, gntR family
       0.13   12.6   0.0       0.27   11.6   0.0    1.5  1  DUF5601   Domain of unknown function (DUF5601)


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.46   2.8e+03      45      83 ..     287     327 ..     277     331 .. 0.78
   2 !   76.6   0.3   2.5e-25   1.5e-21       1      95 []     427     522 ..     427     522 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHHHHH.TTSSGGGE.EEEE-TT----- CS
        OmpA  45 rnweLSqkRAeaVanylqn.egvppsri.svsgyGaerpit 83 
                 r++  S++ A  +++++ + +gv+   i +++ + a+ p++
  EGE24720.1 287 RAQVGSEELAGHIRAAIAQvFGVQDLTIqNTNVHTATMPAA 327
                 47777888899999999999999999997778888888876 PP

  == domain 2  score: 76.6 bits;  conditional E-value: 2.5e-25
                 .B-TTS--B-GGGHHHHHHHHHHHH.S-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk.kpeqkitveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkarnr 95 
                 +Fa +s+e+ ++ k+ ld +ae lk  pe  ++++Ghtd++g++e+n++LS++RA aV++yl+++gv ++r++++g     p+++n+t++++ +nr
  EGE24720.1 427 NFALDSTEIPQENKEILDLAAEKLKaVPETTLRIIGHTDTQGTHEYNQDLSESRAAAVKEYLVSKGVAAERLNTQGASFDYPVASNATEQGRFQNR 522
                 599**********************999999*****************************************9999999*************9997 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.1e-05      0.18      28      62 ..      87     121 ..      84     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.1e-05
                 HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEE CS
        GntR  28 reLaaefgVsrttvReALrrLeaeglverrqgrGt 62 
                 ++La+e++Vs  t R A+ + +   l+ ++ + G+
  EGE24720.1  87 NQLADEYHVSPVTARTAIATAAPLALARIKEQAGA 121
                 79******************999999999999885 PP

>> DUF5601  Domain of unknown function (DUF5601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.6e-05      0.27       5      44 ..      14      53 ..      10      89 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
     DUF5601  5 sfvrkisqrsisieelSemVqdFyqnlaerlnktplyktv 44
                +++++i +++    ++S++  +Fy+ +a rl++  +y+ +
  EGE24720.1 14 HVLTSIKNQDGDNADKSNLLTAFYTIFAGRLSNEDVYQRA 53
                88999999999999***********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4266.27
//
Query:       EGE24721.1  [L=201]
Description: rhomboid family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-28   97.6  10.2    9.9e-28   97.0  10.2    1.3  1  Rhomboid         Rhomboid family
      0.001   19.6   0.3      0.001   19.6   0.3    2.4  3  DUF1751          Eukaryotic integral membrane protein (DUF175
  ------ inclusion threshold ------
       0.58    8.4  10.2        0.7    8.1  10.2    1.1  1  DUF2070          Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0  10.2   1.7e-31   9.9e-28       3     144 ..      36     183 ..      34     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 1.7e-31
                 GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHH-S....-EESSHHHHHHHHHHHHHHHHCCCCG CS
    Rhomboid   3 krgelwrlltsmflHagwlHllfNmlallvfGsplerrl....Gslrflllyllsglagsllsllfsaeses.plvGaSGaifgllgallvlvprnrkl 96 
                 ++g++ rllt+ f+Ha+ +HllfNm+ l++fG  +er +    G l f+ +y+++ +++ l +++ ++++++  ++GaSGa++++l a++++ p+n  +
  EGE24721.1  36 NKGQYDRLLTHGFIHANGMHLLFNMFTLYFFGRVIERFYidkfGNLGFVGFYISAIIIAMLPTYARNKNNTYySSLGASGAVSAVLFAYILFAPWNTLY 134
                 7899********************************9777777************************99987799************************ PP

                 S----HC...CCCCCCCCCCHHHCTSS..STTTHHHHHHHHHHHHHHHHH CS
    Rhomboid  97 lrkliiallllllfillnlvlgllpra..ggvsnlAHlgGllaGlllgll 144
                 l+ ++++  ++++ i++ +  ++  r+  g+++++AHl+G+++G+++++ 
  EGE24721.1 135 LFAVLPI-PAIVFAIAYVAYSIWADRRdgGNINHSAHLFGAVFGVVATIA 183
                 *998888.4444444444444444444799***************98765 PP

>> DUF1751  Eukaryotic integral membrane protein (DUF1751)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.1   6.8e+03      62      70 ..       8      16 ..       3      29 .. 0.48
   2 !   19.6   0.3   1.7e-07     0.001      11      96 ..      43     123 ..      40     126 .. 0.79
   3 ?   -1.1   0.1      0.49   2.9e+03      54      74 ..     138     158 ..     130     185 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
     DUF1751 62 vvlltllly 70
                ++++ ++  
  EGE24721.1  8 IIITVIISI 16
                222222222 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.7e-07
     DUF1751  11 lltasfveqnvwkvlvslltlllggkylErlWgskEllkFilvvnvitnllvvlltlllylvtkseelllvpisGlagilagflva 96 
                 llt++f+ +n +++l++++tl+++g+++Er+       kF  +  v+  + ++++++l  ++ ++++ +++   G+ g ++++l a
  EGE24721.1  43 LLTHGFIHANGMHLLFNMFTLYFFGRVIERFYI----DKFGNLGFVGFYISAIIIAMLPTYARNKNN-TYYSSLGASGAVSAVLFA 123
                 89****************************984....467777777777888888887777777777.556666666666666655 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.49
     DUF1751  54 vnvitnllvvlltlllylvtk 74 
                 v  i++++ +++++++++  +
  EGE24721.1 138 VLPIPAIVFAIAYVAYSIWAD 158
                 455666666666666665554 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  10.2   0.00012       0.7      19     186 ..       5     168 ..       2     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00012
     DUF2070  19 lliillalligllaflssklfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsallqalvllalvlslalvfalrll 117
                 ++ii++ ++i+++a  s++l + l+f+ pa+  +  +  +       + +   ++l + + +++++  ++  ++     ++  l +v  +++++++ +l
  EGE24721.1   5 TVIIIITVIISIAAWQSRPLLERLIFYPPAVNKGQYDRLLTHG----FIHANGMHLLFNMFTLYFFGRVIERFYI---DKFGNLGFVGFYISAIIIAML 96 
                 6889999999999999999999999999988888777666544....4444455555555555555334444433...556666666668889999999 PP

     DUF2070 118 vlvavsdesllkavlpaliqpllailllvly...fspesfllllllslifalavylfivvvdrplkrnlgvs 186
                  ++a  ++++  ++l a+    +++++++l+    + + f++l +  ++fa+a +++ ++ dr+   n++ s
  EGE24721.1  97 PTYARNKNNTYYSSLGASGAVSAVLFAYILFapwNTLYLFAVLPIPAIVFAIAYVAYSIWADRRDGGNINHS 168
                 999999999999999988776666666666633333334444445567777777777777777655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1488.01
//
Query:       EGE24722.1  [L=398]
Description: putative enoyl-CoA hydratase/isomerase FadJ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-103  347.4   0.0   1.1e-103  347.2   0.0    1.0  1  ECH_2     Enoyl-CoA hydratase/isomerase
      1e-28  100.3   0.0    1.8e-28   99.6   0.0    1.3  1  ECH_1     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.2   0.0  1.3e-107  1.1e-103       2     320 ..      60     382 ..      59     395 .. 0.91

  Alignments for each domain:
  == domain 1  score: 347.2 bits;  conditional E-value: 1.3e-107
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS...-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BE CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakeg...kkeeeeffreeYklnyliatypkpvvalmdGi 97 
                 ++itLnrp+alNaL+lemv a++++l++w+ dd+v++v+l ga +kafCAGgD+r ly+  + +   + ++++ff +eY+l ++i++y+kp++ + dGi
  EGE24722.1  60 AIITLNRPDALNALNLEMVAAIQACLDKWAIDDSVAAVLLCGAADKAFCAGGDIRGLYHGYNPKifpNPTAKAFFFTEYALCKQIKSYTKPIIVWADGI 158
                 79*************************************************************9885434499************************** PP

                 EETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSSTTHHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT......... CS
       ECH_2  98 vmGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpgelGlylalTGarlkgadalaaglathyvpseklealeeaLaelessd.eeav 195
                 vmGgG+Gl+v +s+r+vt++t++AmPE++IGlfPD GgsyfL ++p+++Gl+l+lTGar++g+dala+g+a++ + s++++ l +aL+++++sd +++ 
  EGE24722.1 159 VMGGGMGLAVASSHRIVTQTTMMAMPEISIGLFPDAGGSYFLRHMPNKIGLFLGLTGARINGTDALALGVADFGMASDDFDVLIQALTTADWSDdATKN 257
                 ******************************************************************************************999995555 PP

                 --------......--..--SHHHHHHHHHHHT.-S-TTTHHHHHH.T..--SHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHH CS
       ECH_2 196 eevleelaeeaeeeee..eselaekreaidrlfsadsveeiveaLekaeaeedewakktletlkkrsPtslkvtleqlrrgrklsslaevlrmElrlal 292
                 +++l++l  + +++++  +  l  +r++i+r++++    + ++ L++    + e ++++ +t  + sPts+++t+++ ++ +++s ++ev++ E+ +a 
  EGE24722.1 258 HQMLNALLGQLHHNHTlpTGWLLPHRDEIERMMQQAGDLAAFDTLARL-GFNIEYIQQAFKTYIAGSPTSAAITWHMANQVENMS-FDEVMDLEYIVAI 354
                 555555555555544443688899*********999666677777753.35689******************************5.************* PP

                 HHHHHSSHHHHHHHHTTS-------SSS CS
       ECH_2 293 rllaekDfveGvrallvdkdkkPkWkpa 320
                 ++ ++++f+eGvrall+dkdk+P+W++ 
  EGE24722.1 355 HCSHNGEFAEGVRALLIDKDKNPQWQYT 382
                 *************************984 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0     2e-32   1.8e-28       4     179 ..      57     238 ..      54     278 .. 0.87

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 2e-32
                 TTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHC......HHHHHHHCCHHHHHHHHHHSSSEEEEEE CS
       ECH_1   4 agvaviklnrPeavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeek......akqallkeevlelwtklytvpkpviaav 95 
                   +a i+lnrP+a+Nal+ e+++ + + l k   d sv av L G  dkaF+aG+d++ ++++ +        ++ + ++ ++l +++ +  kp+i   
  EGE24722.1  57 RRIAIITLNRPDALNALNLEMVAAIQACLDKWAIDDSVAAVLLCGaADKAFCAGGDIRGLYHGYNpkifpnPTAKAFFFTEYALCKQIKSYTKPIIVWA 155
                 679***********************************************************865554443345567778899**************** PP

                 -SEEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGH CS
       ECH_1  96 nGaaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeql 179
                  G ++gGG+ la+a   +i+ ++   + +e+ +Gl+p+agg+ +l r +++++   + l+g +i++ +al  G+ d  ++ +++
  EGE24722.1 156 DGIVMGGGMGLAVASSHRIVTQTTMMAMPEISIGLFPDAGGSYFL-RHMPNKIGLFLGLTGARINGTDALALGVADFGMASDDF 238
                 ****************************************98766.899*************************9977777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3124.22
//
Query:       EGE24723.1  [L=257]
Description: hypothetical protein EA1_07142 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-85  285.2   0.1    4.1e-85  285.0   0.1    1.0  1  H2O2_YaaD       Peroxide stress protein YaaA
  ------ inclusion threshold ------
       0.19   11.6   0.8       0.48   10.3   0.1    2.0  2  Nuc_rec_co-act  Nuclear receptor coactivator


Domain annotation for each model (and alignments):
>> H2O2_YaaD  Peroxide stress protein YaaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.0   0.1   4.5e-89   4.1e-85       1     231 [.       1     243 [.       1     245 [. 0.96

  Alignments for each domain:
  == domain 1  score: 285.0 bits;  conditional E-value: 4.5e-89
   H2O2_YaaD   1 MlillSpAktldedsleak.tee..tqpefleeaeellealkklseeelkkllkisdklaelnveryqefee..alkkkpAilaynGvvYkaldaesls 94 
                 M +llSpAk+lde+++ +  +++  + p+f+e+a++l+++lk++++ +l++l++is+k+aelnv r+q+++   +++ kpAi++++G+vY++lda +ls
  EGE24723.1   1 MFFLLSPAKNLDEKTAIPLpSHTvySSPRFIEQAAQLMQTLKNYDVIDLQELMGISAKIAELNVIRNQRWAYpfDENAKPAIYLFSGDVYTGLDAYHLS 99 
                 899********99998887533379********************************************998998899********************* PP

   H2O2_YaaD  95 eedleyaqehlrIlSglYGlLrpldliqpYRLemgtklanek..dLyefWgekltealne.....eevlvnLaSkeyskavkpkklkakvitvvFkeek 186
                 e++++y++++l IlSglYGlL+pldli pYRLemgtk+++++  +Ly+fWg+k+t+++n+     + +lvnLaS+ey+ av+pk+++ ++it++F++ k
  EGE24723.1 100 ESQINYLNDKLGILSGLYGLLKPLDLILPYRLEMGTKFQTKQadNLYQFWGNKITDQINQylkqsDGILVNLASQEYFGAVHPKQIQGRIITPRFEDAK 198
                 ***************************************99778*********************99*******************99*********** PP

   H2O2_YaaD 187 ngklkvvsvyaKkaRGlmvryiaenriesveeLkefdeegYrfde 231
                 n+ +kvvs+yaKkaRGlmv+y+a+++i++ve+Lk fd +gY f++
  EGE24723.1 199 NDGYKVVSFYAKKARGLMVNYAAKHQIQDVEDLKYFDTDGYYFAP 243
                 ******************************************986 PP

>> Nuc_rec_co-act  Nuclear receptor coactivator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   5.4e-05      0.48      12      28 ..      36      52 ..      33      56 .. 0.94
   2 ?   -2.7   0.0      0.63   5.6e+03       8      21 ..     111     124 ..     107     126 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.4e-05
  Nuc_rec_co-act 12 QLvslLkntDeigLeEi 28
                    QL+  Lkn+D+i L+E+
      EGE24723.1 36 QLMQTLKNYDVIDLQEL 52
                    9***************7 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.63
  Nuc_rec_co-act   8 ALLdQLvslLkntD 21 
                       L+ L+ lLk  D
      EGE24723.1 111 GILSGLYGLLKPLD 124
                     56888999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2201.24
//
Query:       EGE24724.1  [L=46]
Description: 50S ribosomal protein L36 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-16   60.5   1.1    1.6e-16   60.2   1.1    1.1  1  Ribosomal_L36  Ribosomal protein L36


Domain annotation for each model (and alignments):
>> Ribosomal_L36  Ribosomal protein L36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   1.1   9.1e-21   1.6e-16       1      38 []       1      41 [.       1      41 [. 0.99

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 9.1e-21
  Ribosomal_L36  1 MKVrssvkkmc...egCkvvrRkgrvyviCkknPrhKqRQG 38
                   M V ss+k+ +   e+C++vrR+gr +viCk+nPr+K+ QG
     EGE24724.1  1 MQVLSSLKSAKnrhEDCQIVRRRGRTFVICKSNPRFKAVQG 41
                   99**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 363.14
//
Query:       EGE24725.1  [L=489]
Description: phosphate acetyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.2e-122  406.3   5.9   1.4e-121  405.8   5.9    1.3  1  PTA_PTB   Phosphate acetyl/butaryl transferase
    0.00014   21.7   0.7    0.00051   19.9   0.4    1.9  2  AAA_26    AAA domain
  ------ inclusion threshold ------
      0.046   13.9   0.1       0.34   11.1   0.0    2.4  2  LPD7      Large polyvalent protein-associated domain 7
        4.4    7.8   6.0         15    6.2   6.0    1.9  1  Asr       Acid shock protein repeat


Domain annotation for each model (and alignments):
>> PTA_PTB  Phosphate acetyl/butaryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.8   5.9    3e-125  1.4e-121       2     319 .]     169     483 ..     168     483 .. 0.99

  Alignments for each domain:
  == domain 1  score: 405.8 bits;  conditional E-value: 3e-125
                 HHHHHHHHHCTS--EEEES-TTSHHHHHHHHHHHHTTSSEEEEES-HHHHHHHHHHCTB--TT.-EEE-TTT-CCHHHHHHHHHHHCCCC.S-HCCHHH CS
     PTA_PTB   2 flerivekakkekkrivlpegedervlkAakelleegiadviLigdeaeikakaleldldlsg.ieivdpetsekleeyadelyelrkrkgvtieeare 99 
                 f +++v+ka+++kkrivlpeg+++r+++Aa  ++++gia+++L+g++ +i+a a+e ++ l + iei+dp++    e+y+  ++e+rk k ++ + a++
  EGE24725.1 169 FRNQVVQKAQAAKKRIVLPEGDEPRTIEAAVICQSRGIAQCVLLGERTKIEAVAAERGVVLPNdIEIIDPASIA--EKYVAPMVERRKGK-IDEAGAKQ 264
                 7899*****************************************************9999888*******998..**************.******** PP

                 HTTSHHHHHHHHHHTTSSSEEEE-TTS-HHHHHHHHHHCT-B-TT----EEEEEEEETTEEEEEESSSS-SS--HHHHHHHHHHHHHHHHHCCSS--EE CS
     PTA_PTB 100 vvrdatyfaamlvklgeaDglvsGavnttadtlrpalqiiktkpgvklvSsvfimlledrlllfaDcavnvnPtaeelaeialesaktakalgeeeprv 198
                  ++d++++++m+++ g++DglvsGav+ttadt+rpa+q+ikt+p ++lvSsvf+mll++++++++Dcavn+nPtae+laeia++sak+aka+g ++p+v
  EGE24725.1 265 ALQDTVVLGTMMLHMGDVDGLVSGAVHTTADTIRPAFQLIKTAPQYSLVSSVFFMLLPEQVMVYGDCAVNPNPTAEQLAEIAIQSAKSAKAFG-IDPKV 362
                 *********************************************************************************************.***** PP

                 EEE-SSSTTSS-SHHHHHHHHHHHHHHHH-TTSEEEEEE-HHHHH-HHHHHHH-TTSTTTT--SEEE-SSHHHHHHHHHHHHHCCTEEEEEEEEESBSS CS
     PTA_PTB 199 AlLSyStkgsakgesvekvrealkivkekapdlvvdGelqlDaAlseevaekkapesevaGkAnvlvfPdLeagnigykivqrlakaeaiGPilqGlak 297
                 A++SySt  s++g +v+ v++a++i++ek p+l vdG+lq+DaA +++v ++kap+s vaG+Anvl+fPdL++gn +yk+vqr+a+++++GP+lqGl+k
  EGE24725.1 363 AMISYSTIDSGSGVDVDTVKQAVQIIREKSPELKVDGPLQFDAATVKNVGKQKAPNSAVAGEANVLIFPDLNTGNTTYKAVQRTADVISVGPMLQGLNK 461
                 *************************************************************************************************** PP

                 -EEE--TT--HHHHHHHHHHHH CS
     PTA_PTB 298 PvndlSrgasvedivnvaaita 319
                 PvndlSrga v+div ++a+ta
  EGE24725.1 462 PVNDLSRGALVDDIVYTIALTA 483
                 ********************97 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.4   1.1e-07   0.00051      87     168 ..      54     130 ..      39     164 .. 0.75
   2 ?   -0.5   0.0       0.2   9.1e+02      47      82 ..     148     182 ..     130     193 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.1e-07
      AAA_26  87 dlekivkelekdadivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvr 168
                  lek+    ++ a+++vV G+ +l +   + l+n d+a  l+a+v++V +  ++  +  +++   l++   rvlGvi+ +v 
  EGE24725.1  54 MLEKV--VATQSAKLTVVKGLATLPNTPYASLVNRDLANGLDADVLFVSQNAEEL-AVFAAAFGGLKS--ERVLGVIAAGVD 130
                 36777..5678899**********************************9876653.444455555555..699999999864 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.2
      AAA_26  47 dselikellgldqtyelpeplalsaplspelaarqe 82 
                 d e+ik++  +++  + ++p+a+ +++ ++++a+++
  EGE24725.1 148 DEEVIKNYQ-ATTRVKKLSPYAFRNQVVQKAQAAKK 182
                 556666655.56677789999999999888877654 PP

>> LPD7  Large polyvalent protein-associated domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.39   1.8e+03      61      75 ..     168     182 ..     149     199 .. 0.71
   2 ?   11.1   0.0   7.6e-05      0.34      35      73 ..     376     414 ..     361     422 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.39
        LPD7  61 eFkreaweaaaergl 75 
                 +F++++++ a++++ 
  EGE24725.1 168 AFRNQVVQKAQAAKK 182
                 788888888876544 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.6e-05
        LPD7  35 dddeavaaalelAqakwgsltvsGseeFkreaweaaaer 73 
                  d ++v+ a+++ ++k  +l+v+G+ +F +++++ + ++
  EGE24725.1 376 VDVDTVKQAVQIIREKSPELKVDGPLQFDAATVKNVGKQ 414
                 46689**************************99988766 PP

>> Asr  Acid shock protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.0    0.0033        15      14      21 .]     175     182 ..     172     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0033
         Asr  14 QKAQAAKK 21 
                 QKAQAAKK
  EGE24725.1 175 QKAQAAKK 182
                 *******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3768.64
//
Query:       EGE24726.1  [L=394]
Description: acetate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.7e-130  432.8   0.0   1.1e-129  432.6   0.0    1.0  1  Acetate_kinase  Acetokinase family


Domain annotation for each model (and alignments):
>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.6   0.0  6.2e-134  1.1e-129       3     389 ..       8     385 ..       6     386 .. 0.96

  Alignments for each domain:
  == domain 1  score: 432.6 bits;  conditional E-value: 6.2e-134
  Acetate_kinase   3 LviNaGSsSlKfqlleaeakeevllkglveeilleeaellkklegekkeaektaiadheealklilntlkeekvikdlkeiaaighRvvhggekf 97 
                     Lv+N+GSsS+K++l+    ++   ++gl+e ++ +ea++++k   ++ + ++     h++alk+il+ l +       ++   +ghRvvhgg kf
      EGE24726.1   8 LVLNCGSSSIKYALISE--DGGSRIEGLAEGLGNPEARIKHKNLEGEATIIDIPNGVHADALKVILEDLIK------AHKPVVVGHRVVHGGDKF 94 
                     9***************9..69999******************888998999999999************99......344568************ PP

  Acetate_kinase  98 tesvlitdevvekikdlielaplhNpanlegieaakkllpevknvavfDtafhqtlpeeaylyalpeelyeehgiRrygfHgtshkyvskraaki 192
                     +++++i++ev+ +i+ l +laplhNpan  gi+a++++ p++++va+fDtafhqt+pe+ay ya+p++ly+eh+iRrygfHgtsh +vs+ra ++
      EGE24726.1  95 KSATVIDEEVLSTIEALTSLAPLHNPANAAGIQAINAIYPDLPQVAIFDTAFHQTMPEYAYRYAVPKNLYTEHQIRRYGFHGTSHAFVSNRASQL 189
                     *******************************************************************************************9998 PP

  Acetate_kinase 193 lgkpledlnlivcHlGnGaSvaavknGksvdtsmgltpLeGlvmgtRsGdidpailvylaeteglsadeventlnkksGllglsglssDlreved 287
                      + +      +v+HlGnG S +av +Gks+dtsmg+tpLeGl+mgtRsGd+dp++ ++l +t gls dev+++lnkksGllg+sg+s+D+r++e+
      EGE24726.1 190 TDAKG-VHGWVVAHLGNGCSATAVYDGKSLDTSMGITPLEGLMMGTRSGDVDPSLHIHLNRTLGLSLDEVDTLLNKKSGLLGVSGISNDMRNLEA 283
                     87544.5799************************************************************************************* PP

  Acetate_kinase 288 aaeegdeeaelalkvyvhrlakyigeyaavlegkvDaivFTgGigenaalvrelvlkalevlglevdkeknk.nrsGedelisteqskvkvivvp 381
                     a +eg  +a+lal+++++r aky+ + +a+l  +  +i FTgG+gena ++r++++k+l+ lg ++d+ kn    +G ++    e+s ++  v+p
      EGE24726.1 284 ADKEGSADARLALDMFAYRTAKYLLSLTAAL-PEFTGIAFTGGVGENAVEMRADIIKHLKHLGAKIDTTKNDkLMRGAEGSFHAEDSSIELWVIP 377
                     *******************************.5**************************************6599******************** PP

  Acetate_kinase 382 tnEelaia 389
                     t+Ee+ ia
      EGE24726.1 378 TDEEYQIA 385
                     *****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3201.43
//
Query:       EGE24727.1  [L=48]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-08   33.8   2.6    2.4e-08   33.6   2.6    1.1  1  LPAM_2    Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   2.6   1.3e-12   2.4e-08       2      23 .]       8      29 ..       7      29 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.3e-12
      LPAM_2  2 llllallllLaGCGqKGPLYlP 23
                + l++  +lL++CGqKG LYlP
  EGE24727.1  8 FGLSLMISLLSACGQKGSLYLP 29
                678999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 405.25
//
Query:       EGE24728.1  [L=435]
Description: diaminopimelate decarboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-69  233.9   0.0    2.1e-69  233.6   0.0    1.1  1  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
    3.9e-21   75.1   0.0    6.2e-21   74.5   0.0    1.5  1  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina
    8.1e-10   38.7   0.1    2.9e-09   36.9   0.1    1.9  1  Ala_racemase_N   Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.6   0.0   3.6e-73   2.1e-69       5     247 .]      62     303 ..      58     303 .. 0.97

  Alignments for each domain:
  == domain 1  score: 233.6 bits;  conditional E-value: 3.6e-73
                    HHHHHHHHHHCT..CCEEEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHTEEEESSHHHHHHH CS
  Orn_Arg_deC_N   5 erklkrwkkalp..rikvfYavKansdlavlellaelGlgldcaSkaElelvlaagvsperiifanpckqreelryalekgvkvvtvdnveelekl 98 
                     ++++++ +a++  +++++YavKans+la+l++la+ G+g+d++Sk+El++vl++ ++++++++++  k++++++yal+ ++++++v++ +el+ +
     EGE24728.1  62 LENYQSYTDAFDtiDHQICYAVKANSNLAILKTLAKAGAGFDIVSKGELARVLQV-ADAKKVVYSGVGKTADDIEYALKADIHCFNVESLSELDTI 156
                    677899999999999**************************************97.59************************************** PP

                    HHHHCC....EEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHHHHT- CS
  Orn_Arg_deC_N  99 aklape....akvllRiktdvsaatcelistggessKFGaaleeavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdelaelGv 190
                    +++a +    a+++lRi++dv+a+t+++istg +++KFG++ e+av+a+  a +  nl++vG+++H+GS++ d+ +f +a++k+++l+d l+  G+
     EGE24728.1 157 NEVAGRqnqiARISLRINPDVDAKTHPYISTGMKDNKFGISHEQAVAAYVYAHHLPNLKIVGIDCHIGSQLLDTDGFSDALDKLIELIDTLTDKGI 252
                    ****99999*************************************************************************************** PP

                    --SEEE--S-BS-HCSTTSSSSTHHHHHHHHHHHHHHHHHTSSS-EEEE--SHHHHG CS
  Orn_Arg_deC_N 191 klkiLdvGGGfgveyeeeeeplkleeiaekirealeeafpgdkevtiiaEpGRalva 247
                    kl+++d+GGG+gv+y  +e+p++++++a ++ ++l+++     ++++ +EpGR+lva
     EGE24728.1 253 KLQHIDLGGGLGVRYI-DENPVSIDQVATVLLPRLKQL-----GLKLYLEPGRSLVA 303
                    ****************.799***************888.....689*********97 PP

>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0     1e-24   6.2e-21       5      98 .]     204     391 ..      53     391 .. 0.75

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 1e-24
                      E............................................................................................. CS
                      x............................................................................................. RF
  Orn_DAP_Arg_deC   5 d............................................................................................. 5  
                                                                                                                    
       EGE24728.1 204 Ayvyahhlpnlkivgidchigsqlldtdgfsdaldklielidtltdkgiklqhidlggglgvryidenpvsidqvatvllprlkqlglklylep 297
                      0555577777777777777777777777888888888888888888888888888888888888888888888888888888888888888888 PP

                      ......GGEEEEEEEEEEEEETCEEEEEES--TTTS-HHHHCTT-S-E.ESBTT-SCEEC.EEEEEEEE-SSSSTT-EEEEEEEEEE--TT-EE CS
                      ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC   6 ......eagvLvtrViavkesekkkfvivdaGmndllrpalygsfhei.pvkeeeaekeeeeeeevdvvGptCesgDvlakdrelpelevGdll 92 
                            +agvL+t+V   k +e k+f+ivda+m++l+rpaly+s ++i p+k      ++++ +++dvvG +Ces+D+l+kdr l  l+vGd l
       EGE24728.1 298 grslvaNAGVLLTTVDVLKPTEFKNFAIVDASMSELIRPALYESQMAIiPAKL-----SRDTAKTWDVVGTVCESSDFLGKDRIL-SLQVGDTL 385
                      888888**************9977************************66642.....2334678*****************999.9******* PP

                      EESS-S CS
                      xxxxxx RF
  Orn_DAP_Arg_deC  93 afedaG 98 
                      a+  aG
       EGE24728.1 386 AVTGAG 391
                      *99887 PP

>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   4.9e-13   2.9e-09       3     190 ..      58     257 ..      56     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 4.9e-13
                     HHHHHHHHHHHHHHSCT.TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESC.STGGGHHHHHHTTEEEE.E CS
  Ala_racemase_N   3 ldalrhNlrrlralagp.gaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvleg.fspeelaalaeydltvt.v 94 
                     + al +N++   ++++  +++++  vKan   + +  +a+ +  +g d +    l+  l++++a   +++++ +   ++++++ ++++d+++  v
      EGE24728.1  58 QRALLENYQSYTDAFDTiDHQICYAVKANSNLAILKTLAK-AG-AGFDIVSKGELARVLQVADA---KKVVYSGVgKTADDIEYALKADIHCFnV 147
                     67999**********557999*******776666666666.33.33666666666666666666...5777777788***********999855* PP

                     SSHHHHHHHHHHHHH............TTS-EEEEEEBESSSS..SSSBSCHHHHHHHHHHHHTTTEEEEEEE-S-SST..TSTSHHHHHHHHHH CS
  Ala_racemase_N  95 dsleqlealaaaare............agkplrvhlkidtgmg..RlGftpeeleellealaalpglrleglmtHfasa..depdeeteaqlarf 173
                      sl +l+ ++++a +             +  ++ h  i tgm   + G++ e++ +++  +++lp+l+++g+  H +s   d+  + +   l+++
      EGE24728.1 148 ESLSELDTINEVAGRqnqiarislrinPDVDAKTHPYISTGMKdnKFGISHEQAVAAYVYAHHLPNLKIVGIDCHIGSQllDT--DGFSDALDKL 240
                     ***************666666666666666666666677888899*********************************85554..489999**** PP

                     HHHHHHHHHTTGGGSEE CS
  Ala_racemase_N 174 eealeelekaglrppvv 190
                      e++++l ++g++ + +
      EGE24728.1 241 IELIDTLTDKGIKLQHI 257
                     *****999998886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3163.27
//
Query:       EGE24729.1  [L=299]
Description: diaminopimelate epimerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-60  201.4   0.0    1.5e-30  105.9   0.0    2.0  2  DAP_epimerase  Diaminopimelate epimerase


Domain annotation for each model (and alignments):
>> DAP_epimerase  Diaminopimelate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.0   8.1e-35   1.5e-30       1     120 [.       5     125 ..       5     126 .. 0.95
   2 !   93.7   0.1   4.7e-31   8.4e-27       2     120 ..     157     272 ..     156     273 .. 0.96

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 8.1e-35
                    EEEECSSEEEEEEECCTTCSSHHHHHHHHHHHTTTTSTT-SEEEEEE..EEETTEEEEEEEETTTEEESTTHCCHHHHHHHHHCTTS-S-SEEEEE CS
  DAP_epimerase   1 fakshGnpndvvvvddveaelvleaelvaalcdreagpgadgvlfvk..psgeediklryfnrdgseaemCGnGvrvfaaylreggletkkevtve 94 
                    f+k+hG++nd++v+d v +  +l++el++ l+dr+ g+g d++l+v+   +++ d+k+r+fn+dgse ++CGnG+r+fa ++++++l  k++++ve
     EGE24729.1   5 FTKMHGLGNDFMVIDLVTQRMTLTPELIRLLADRRIGVGFDQLLIVEppSRPDIDFKYRIFNADGSEVSQCGNGARCFASFVQARKLSFKQRLRVE 100
                    89*********************************************765666788889************************************* PP

                    ETTEEEEEEEECTTSSEEEEEE--EE CS
  DAP_epimerase  95 tlgGeleievkddgekvkvdmGkasl 120
                    t++G + +++++ g  v+vdmGk+++
     EGE24729.1 101 TSSGIIILSTNRYGW-VQVDMGKPKF 125
                    ******999999995.*******986 PP

  == domain 2  score: 93.7 bits;  conditional E-value: 4.7e-31
                    EEECSSEEEEEEECCTTCSSHHHHHHHHHHHTTTTSTT-SEEEEEEEEETTEEEEEEEETTTEEESTTHCC.HHHHHHHHHCTTS-S-SEEEEEET CS
  DAP_epimerase   2 akshGnpndvvvvddveaelvleaelvaalcdreagpgadgvlfvkpsgeediklryfnrdgseaemCGnG.vrvfaaylreggletkkevtvetl 96 
                    + ++Gnp++++ vddv  ++v++  l++ ++++ea+p++++v+fv++ +++++++r+++r+ +e+++CG+G ++ +a+ +reg l++  +++ ++ 
     EGE24729.1 157 VANIGNPHAIIKVDDVLDADVDR--LGKLIESHEAFPERVNVNFVQVINQRHVRIRVYERGVGETQACGTGaCASVATGIREGWLDEGVDIRAQLY 250
                    6799*******************..*********************************************************************** PP

                    TEEEEEEEECTTSSEEEEEE--EE CS
  DAP_epimerase  97 gGeleievkddgekvkvdmGkasl 120
                    gG+l i ++d  +    ++G+  +
     EGE24729.1 251 GGSLAIRWQDGYS--LIMTGPTAF 272
                    *********9987..899998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2429.13
//
Query:       EGE24730.1  [L=330]
Description: tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-41  141.3   0.1    3.8e-41  140.7   0.1    1.3  1  Phage_integrase  Phage integrase family
    6.9e-13   48.7   0.6    1.1e-11   44.9   0.1    2.6  3  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
    1.4e-10   41.5   0.3    4.4e-10   39.9   0.1    1.9  2  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
  ------ inclusion threshold ------
      0.086   13.2   0.1       0.33   11.3   0.1    1.9  1  Phage_int_SAM_5  Phage integrase SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   0.1   8.6e-45   3.8e-41      19     170 ..     157     307 ..     140     309 .. 0.95

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 8.6e-45
                      HHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH.CHCCTTTSBSSBET.TSSB--HHH CS
  Phage_integrase  19 lkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellska.leeaeksellfask.rgkplsrqt 110
                      l irdk+++el+y++GlR sEl++L+++d++++ g+++v    gKg+k r+vp++++a+ +l+++l ++ l ++++ ++lf+s+ +g +ls+++
       EGE24730.1 157 LWIRDKAMFELMYSSGLRLSELAGLNMGDVNFDTGIVRV---LGKGNKTRQVPVGKKAMIALQDYLPHRnLWQKKNCKALFISErHGTRLSTRA 247
                      568************************************...*************************99988999999999998799******* PP

                      HHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase 111 vrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                      ++ ++k  +  agie ++ pH lRh fa++ l +  dlr++q++lGH++isttqiYthv+
       EGE24730.1 248 IQLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVD 307
                      **********************************************************97 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.1   2.4e-15   1.1e-11       3      84 .]      29     112 ..      27     112 .. 0.87
   2 ?   -2.3   0.0       1.3   5.8e+03      51      69 ..     233     251 ..     213     255 .. 0.67
   3 ?    1.0   0.0      0.12   5.5e+02      24      47 ..     283     305 ..     278     319 .. 0.73

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2.4e-15
                      HHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH...TS--TTT--HHHHHHHHHS-----.-----HHHHHHHHHHHHHHHHHTT CS
  Phage_int_SAM_1   3 qfleyLikerglspnTlraYrrdLrrflkflae..rgkesleqlttedvraflaeleeeg.lsatslarrlsalrsFfqflvreg 84 
                      ++ ++L++ +++s++T+ +Y+ +L  f++fl++    + + ++++++d+ +f  +++ee   +  s+++ lsa+r F+qfl+++g
       EGE24730.1  29 SWCDELRL-QNYSKHTITTYQTALIQFFNFLESdnYLGGDPLACRRQDLTRFFSTRLEEEkIKPISAKLSLSAIRIFYQFLIKQG 112
                      67778885.578*********************66567889999*****887777777666*********************997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
                      HHHHS----------HHHH CS
  Phage_int_SAM_1  51 aflaeleeeglsatslarr 69 
                       f+ e++  +ls++ + +r
       EGE24730.1 233 LFISERHGTRLSTRAIQLR 251
                      4666777777777766665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.12
                      HHHHHHHHHHHH.TS--TTT--HH CS
  Phage_int_SAM_1  24 rdLrrflkflaergkesleqltte 47 
                       dLr+++++l + +  s +q+ t+
       EGE24730.1 283 GDLRAIQEMLGH-QNISTTQIYTH 305
                      59**********.44444444443 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   9.9e-14   4.4e-10       4      82 ..      29     112 ..      27     114 .. 0.94
   2 ?   -3.7   0.0       3.9   1.8e+04      14      23 ..     148     157 ..     141     158 .. 0.71

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 9.9e-14
  Phage_int_SAM_4   4 rfrealrlaglserTiksYlsaikrflrflkkk.....apeeltkedieaYlnyLanerklsastqknalnalsffykkvlere 82 
                      ++ ++lrl+++s+ Ti +Y++a+ +f +fl+ +      p  + ++d+ ++++  ++e+k ++ ++k  l+a+++fy+ ++++ 
       EGE24730.1  29 SWCDELRLQNYSKHTITTYQTALIQFFNFLESDnylggDPLACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQG 112
                      67899*************************96689999****************************************999876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.9
  Phage_int_SAM_4  14 lserTiksYl 23 
                       +e T k+Yl
       EGE24730.1 148 TPEDTAKAYL 157
                      5677888887 PP

>> Phage_int_SAM_5  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   7.3e-05      0.33       7      99 .]      28     124 ..      25     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.3e-05
                      HHHTHHHHTTS.-HHHHHHHHHHHHHTTTS-..S-........--TTT--HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHTTS--S CS
  Phage_int_SAM_5   7 keyiekkkkkg.skgtlrnykstlkhlkkFlkkkd........itfeeidkefleeFedYLkkkkglsentiskyfkklkavlnkAikegilkk 91 
                       +++++ + ++ sk t+++y+++l ++ +Fl++++        ++ +++++     F + L +++++++ +++  ++ ++ +++  ik+g++  
       EGE24730.1  28 SSWCDELRLQNySKHTITTYQTALIQFFNFLESDNylggdplaCRRQDLTRF----FSTRL-EEEKIKPISAKLSLSAIRIFYQFLIKQGVIAV 116
                      556666666666889****************433344453334555555555....55557.789***************************** PP

                      -HHHHHTX CS
  Phage_int_SAM_5  92 npypkkki 99 
                      np   +ki
       EGE24730.1 117 NPTTGYKI 124
                      **776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2458.03
//
Query:       EGE24731.1  [L=398]
Description: hypothetical protein EA1_07182 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-24   85.5   0.1    5.1e-24   85.2   0.1    1.0  1  FAD_binding_3   FAD binding domain
    1.6e-07   30.9   0.3     0.0017   17.7   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    6.7e-07   28.7   1.8      0.047   12.7   1.0    2.9  2  Lycopene_cycl   Lycopene cyclase protein
     0.0003   20.1   0.0      0.024   13.9   0.0    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0004   20.9   0.1          1    9.9   0.0    2.6  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00054   20.0   0.3       0.54   10.2   0.0    2.3  2  NAD_binding_9   FAD-NAD(P)-binding
    0.00076   18.8   0.0     0.0014   17.9   0.0    1.6  1  Thi4            Thi4 family
     0.0025   16.6   0.0      0.095   11.4   0.0    2.1  2  HI0933_like     HI0933-like protein
     0.0083   16.3   0.0      0.022   15.0   0.0    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.025   13.6   0.1      0.032   13.3   0.1    1.3  1  SE              Squalene epoxidase
      0.042   13.4   0.0          1    8.9   0.0    2.3  2  DAO             FAD dependent oxidoreductase
       0.06   12.2   0.0        4.3    6.1   0.0    2.5  3  Trp_halogenase  Tryptophan halogenase
       0.15   11.1   0.0         13    4.7   0.0    2.1  2  GIDA            Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.1   3.7e-27   5.1e-24       3     340 ..       9     348 ..       7     355 .. 0.78

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 3.7e-27
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS.....SSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC.....CEEEE CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs.....ttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdt.....pkara 88 
                    d++IVGaGpaGl  +++ +   vr +l+ek s     + ++++r   l++++ e+l++lG ++r++ +     l    +yn   ++      +++ 
     EGE24731.1   9 DIIIVGAGPAGLAFSRFFKGSDVRLTLIEKSSlaalqNPAYDGREIALTNTSKEILQNLGAWQRFAPDE-IYPLKDAKVYNG--NLnyalhFQVPK 101
                    789***************************8732222455666***********************999.777888888888..223457656666 PP

                    EHHCHHCST-.CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEE CS
  FAD_binding_3  89 dlelessper.vtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetv 182
                     ++ + s  r   +++ ++++++L+++ +    +++  ++ v+ ++ d+++   ++ +   g+  ++ a+ +++aD   S +r+ lgi  + ++  
     EGE24731.1 102 LMHRQRSLDRlGNLISNHNIKKALYDEVATMDnVTLITDATVTDVNTDDTKACVTLMN---GK--QLYADLVIAADSRLSGMRRMLGIGAHMHD-- 190
                    6665555555057788999*******96666668887788888777777774444444...44..5*********************9854444.. PP

                    EEEEEEEEEEEC-SCCCTTC....CEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEE.EEEEEEE CS
  FAD_binding_3 183 yeagvldvlfdadlsdivep....lvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldveie.evsawtv 273
                      +g   ++f++  +   ++    +++++    r ++++Pl++t      +++++++++++  k+t+e+++ ++++ +g+ + +  i   v ++++
     EGE24731.1 191 --FGRTVIVFRVTHPL-SNHgiaqECFLY---GRTLALLPLNETM--TNCVITLDNTQADELLKMTPEQLAHEAQRMFGDGFGTFTIAgTVHHYPL 278
                    ..88888888885552.233455566666...566789*****44..45788899999**************************977626899*** PP

                    EEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHH.HHHHHTT..SS-GGGGHHHHHHHHH CS
  FAD_binding_3 274 aqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawk.LaavlkG..eAkeelLdtYeeerra 340
                        a k++ +r  l+GDAa  + P+++ G N+++q a +La   L a+ +G   +++ lL  Y+++ +a
     EGE24731.1 279 MGVHAHKFHANRAALIGDAAVGMHPVTAHGYNLGLQSANTLAPLiLQAHRRGldIGSNHLLSMYNRRHQA 348
                    *****************************************97515555565334677888888776555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.2e-06    0.0017       2      38 ..       9      45 ..       8     111 .. 0.78
   2 !   11.3   0.3   0.00011      0.15     187     234 ..     124     171 ..     103     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.2e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclng 38
                 d++++G+GpAGla++++ + + ++ tl+e+     ++
   EGE24731.1  9 DIIIVGAGPAGLAFSRFFKGSDVRLTLIEKSSLAALQ 45
                 89**************************744443333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00011
                  HHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 187 aaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvva 234
                  a + e+ + ++v++ + ++v++++ +++k+ v+l +g+++ adlv+ a
   EGE24731.1 124 ALYDEVATMDNVTLITDATVTDVNTDDTKACVTLMNGKQLYADLVIAA 171
                  3455666666*****************9666**************976 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   4.6e-05     0.063       1      34 [.       9      40 ..       9      50 .. 0.89
   2 !   12.7   1.0   3.4e-05     0.047      74     160 ..     106     186 ..      96     381 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.6e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasp 34
                   D++++GaGpAgl+       +  +++++lie s 
     EGE24731.1  9 DIIIVGAGPAGLAFSRFF--KGSDVRLTLIEKSS 40
                   9*************9999..99999999999876 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.4e-05
  Lycopene_cycl  74 killgraYgrvsskrlkeellerlv..engvklleakvesveeeeageslvvleggrkirarlvvdarglaslkkarrlglQtfyGvev 160
                    ++ l+r  + +s +++k+ l  +++  +n    ++a+v+ v+ ++  +  v+l +g++++a lv+ a         r  g+  ++G+ +
     EGE24731.1 106 QRSLDRLGNLISNHNIKKALYDEVAtmDNVTLITDATVTDVNTDDT-KACVTLMNGKQLYADLVIAADS-------RLSGMRRMLGIGA 186
                    55666666789999999999999997455566789********999.9*****************9988.......3344444555544 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.8e-05     0.024       1      33 [.      11      42 ..      11      47 .. 0.92
   2 ?    4.0   0.0     0.018        25      86     131 ..     125     171 ..     105     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnig 33
                 iI+GaGPaGla+   +k +++ +++ +Ek ++ 
   EGE24731.1 11 IIVGAGPAGLAFSRFFKGSDV-RLTLIEKSSLA 42
                 8********************.799***98765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.018
  Pyr_redox_3  86 YlrevaksfelpiklfeeVesvkkedegfevetske.tyeAkkviiA 131
                   ++eva+  ++   ++ +V++v+ +d++  v+  ++ ++ A+ vi A
   EGE24731.1 125 LYDEVATMDNVTLITDATVTDVNTDDTKACVTLMNGkQLYADLVIAA 171
                  47888999999999999999999999988888776547888888766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00075         1       2      32 ..      10      40 ..       9      53 .. 0.91
   2 !    8.2   0.1    0.0026       3.6      37      77 ..     116     156 ..      99     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00075
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversd 32
                +++vG+G  gl +  +++    + t++e s+
  EGE24731.1 10 IIIVGAGPAGLAFSRFFKGSDVRLTLIEKSS 40
                89**************************986 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0026
                 TSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox  37 llDeeaskilqeklekn.gievllntkveeiegsedgvesvk 77 
                   ++ + k+l +++  + +++++++++v+ +++++ +   v+
  EGE24731.1 116 ISNHNIKKALYDEVATMdNVTLITDATVTDVNTDDTK-ACVT 156
                 478899999999998888**************99987.3355 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00039      0.54       2      56 ..      12      61 ..      11      70 .. 0.83
   2 !    7.5   0.2    0.0027       3.8     116     152 ..     134     171 ..     119     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00039
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpa 56
                   ivGaGp+Gla+  r+ +     s++++tl+++s++ a +    d  e  l+N++ 
     EGE24731.1 12 IVGAGPAGLAF-SRFFKG----SDVRLTLIEKSSLAALQNPAYDGREIALTNTSK 61
                   9*******986.566665....59********99987888888888999999976 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0027
  NAD_binding_9 116 tvevh.raevvdleeradgqavlladgaslaadaVvLA 152
                    +v+++  a+v+d++++++++ v+l +g++l ad V+ A
     EGE24731.1 134 NVTLItDATVTDVNTDDTKACVTLMNGKQLYADLVIAA 171
                    566662569**************************987 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06    0.0014      17      50 ..       7      39 ..       2     181 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1e-06
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailers 50
                 sD++ivGaG++GL+ ++ +  + d++++++e+s
  EGE24731.1  7 CSDIIIVGAGPAGLAFSRFFKGS-DVRLTLIEKS 39
                58****************99888.********86 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   6.9e-05     0.095       2      33 ..       9      40 ..       8      88 .. 0.90
   2 ?    3.2   0.0     0.021        29     111     161 ..     121     171 ..     103     184 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.9e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 d+i++G+G+AGl  +   +  + r +l+ek +
   EGE24731.1  9 DIIIVGAGPAGLAFSRFFKGSDVRLTLIEKSS 40
                 89**********9999999999999***9975 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.021
                  HHHHHHHHHHH.HT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE- CS
  HI0933_like 111 ivdallkelke.agvklrletevksvekeedgkfrvktkseeeleadklvlA 161
                  i +al  e+    +v+l ++ +v++v++++++   v++ ++++l ad ++ A
   EGE24731.1 121 IKKALYDEVATmDNVTLITDATVTDVNTDDTK-ACVTLMNGKQLYADLVIAA 171
                  66667766654389************887777.7777779999999977766 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-05     0.022       1      29 [.      12      40 ..      12      45 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   IvGaG +Gl++ ++ +  +++ +l+ek++
     EGE24731.1 12 IVGAGPAGLAFSRFFKGSDVRLTLIEKSS 40
                   9*************************975 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.3e-05     0.032     116     217 ..     275     376 ..     165     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
          SE 116 smpnkflpasknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkelda.vvnvLsialyslfaadsdelk 213
                   p   + a+k + + + l+GDa    HP+t+ G   +l+ +  l+ l+ +    +  +  +++l s y +R + ++  +   ++a+ ++f++d+  ++
  EGE24731.1 275 HYPLMGVHAHKFHANRAALIGDAAVGMHPVTAHGYNLGLQSANTLAPLILQA-HRRGLDIGSNHLLSMYNRRHQAHTrPLYHGTNAMVTVFTTDTLPMR 372
                 555556678888888899****************************999887.3444455578899999999888775688888999999999998888 PP

          SE 214 alrk 217
                 ++r 
  EGE24731.1 373 TVRD 376
                 8775 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00074         1       1      33 [.       9      43 ..       9      82 .. 0.89
   2 ?    2.1   0.0     0.085   1.2e+02     150     203 ..     123     174 ..     110     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00074
                EEEEECTSHHHHHHHHHHHHTT....EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg....Vtllekgdiag 33
                d++i+G+G +Gl+  ++    g     tl+ek++ a+
  EGE24731.1  9 DIIIVGAGPAGLAFSRFFK--GsdvrLTLIEKSSLAA 43
                8*****************4..33599******97666 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.085
                 HHHHHH.HHHTT-EEEESECEEEEEEEE.TCEEEEEEECT.EEEEEEEE.EEE--GGG CS
         DAO 150 aalara.aealGveilegtevtgleeed.gkvwgverttp.gendaada.vVnaaGaw 203
                 +al+++ a    v++++ ++vt+++ +d +  +++      g +    a +V+aa   
  EGE24731.1 123 KALYDEvATMDNVTLITDATVTDVNTDDtKACVTL----MnGKQ--LYAdLVIAADSR 174
                 678888677778************66554333333....22665..223377776544 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0031       4.3       1      38 [.       9      43 ..       9      68 .. 0.89
   2 ?    3.6   0.0     0.018        25     161     213 ..     127     182 ..      79     197 .. 0.75
   3 ?   -2.8   0.0       1.6   2.2e+03     312     348 ..     285     321 ..     237     348 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0031
                    EEEEE--SHHHHHHHHHHHHHTTTS.SEEEEEE-SSS-- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk.levtlveseeigt 38
                    +i+ivG+G+aG     a+++ +kg+ +++tl+e++ +  
      EGE24731.1  9 DIIIVGAGPAG----LAFSRFFKGSdVRLTLIEKSSLAA 43
                    69********9....57899999999*******998765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.018
                     HHHHHHCT-EEEE--.EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-....SGGG-II CS
  Trp_halogenase 161 rrvaearGvtrvegk.vvevqldedgrveslrledgreveadlfiDc....sGfrgll 213
                      +va+ ++vt + +  v++v++d  +  + ++l +g+++ adl+i +    sG+r++l
      EGE24731.1 127 DEVATMDNVTLITDAtVTDVNTD--DTKACVTLMNGKQLYADLVIAAdsrlSGMRRML 182
                     35788889998766515555555..4556678888**********7655667888776 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.6
                     -SEETTEEE-CCCTEE--CCCS-HHHHHHHHHHHHHH CS
  Trp_halogenase 312 qawvknvvalGlasgfvePlestsihliqaalrrLla 348
                     ++  +   ++G+a+  + P+ + +  l  +++++L+ 
      EGE24731.1 285 KFHANRAALIGDAAVGMHPVTAHGYNLGLQSANTLAP 321
                     4444455567888888888887777777777766665 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0097        13       1      43 [.       9      48 ..       9      78 .. 0.67
   2 ?    4.5   0.0     0.011        16      92     147 ..     116     171 ..      92     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0097
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnps 43
                d+i++G+G AG++ +   + + ++ +Li  + +++a l  np+
  EGE24731.1  9 DIIIVGAGPAGLAFSRFFKGSDVRLTLI--EKSSLAAL-QNPA 48
                79*********97666666555555555..44444444.3555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
                 E-HHHHHHHHHHHHHTSTTEEEEES.-EEEEEECTTEEEEEEETTS-EEEECEEEE- CS
        GIDA  92 vdrelyskevteklenepnleiiee.eveeliveekkvkgvvtedgetikakavvia 147
                 +  ++++k++ +++ + +n+++i++ +v+++++ +++ + v++ +g+++ a+ v+ a
  EGE24731.1 116 ISNHNIKKALYDEVATMDNVTLITDaTVTDVNT-DDTKACVTLMNGKQLYADLVIAA 171
                 566788999999*********987527999977.66777799999***999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 2580.89
//
Query:       EGE24732.1  [L=148]
Description: hypothetical protein EA1_07187 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1038.70
//
Query:       EGE24733.1  [L=347]
Description: ApbE-like lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-73  245.6   0.1    6.8e-73  245.4   0.1    1.0  1  ApbE      ApbE family


Domain annotation for each model (and alignments):
>> ApbE  ApbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.4   0.1   3.8e-77   6.8e-73       1     257 [.      31     322 ..      31     323 .. 0.88

  Alignments for each domain:
  == domain 1  score: 245.4 bits;  conditional E-value: 3.8e-77
                 TTEEEEEEE.E.........HHHHHHHHHHHHHHHC-SS-TTSHHHHHHCT..SS-EEE-HHHHHHHHHHHHHHHHTTTSS-TTTHHHHHHHCTTSGG. CS
        ApbE   1 mgttvsitl.y..g......leaaieaelerlekllsryrpdSelsrlNra..kkevkvspelaellkaaleiseltdgafdptvgplvklwgfgeeka 88 
                 mgt+++i++ y  +      ++aai+++l+++++++s+y+++S +sr+Nr   k+++ ++++++++l+ ++++++l++ afdptv plv+lwgfg + +
  EGE24733.1  31 MGTSYHIRFdYadHlsdtasIQAAIDERLQAINDSMSTYQENSTISRFNRLpaKTDLVIDDDFIQVLTDSQTVYQLSHRAFDPTVYPLVQLWGFGGQMS 129
                 9*******95355155677788***************************99844779************************************998543 PP

                 ..--...--HHHHHHHHTT.-GGGEEE....EESTT..-----TTTHHHHHHHHHHHHHHH..TT-EEEEEETTEEEEEC..-ECT-EEEEEE-TT... CS
        ApbE  89 ..rv...psaeeidaalalvgykkiel....lakkgpgmkLDlggiaKGyavdrvaellka..giksalvnlGGdiralG..pdgkpwrvgiedPr... 171
                   r+   p++++i++a++ vg +k++l    l+k+ +g+ LD+++iaKGyavd +a+ l+   g+ ++++++GG++++lG  ++g+pw+ gi+ P    
  EGE24733.1 130 ieRLqspPTEDDIAKAKQWVGLDKVTLneqkLSKSIDGVGLDFSAIAKGYAVDVIANTLHHdyGVVNYMIEIGGEVATLGvnDKGDPWTLGIDAPIids 228
                 33225569******************9******************************99999******************987889*********9876 PP

                 S....SEEEEEE..ESSS...EEEEEETTSSEEE..TEEEES-B-TTTSSB---SECEEEEEESC.HHHHHHHHHHHHHHHHHHHHHHCCGGGTCTEE CS
        ApbE 172 a....ellavls..lsdd...avaTSGdyeryfe..gkryhHiidprtgyPaesglasvtViads.alADalaTalfvlgeekalellekkeegveal 257
                      ++l++l+  +  +    +aTSG y++ +e  g+r++H+i+p tg+P+ ++  svtV++d+ alADa+aTal +l+  +al+l++ +  g+ a+
  EGE24733.1 229 GvknrTVLTTLTqpI--GepmHLATSGGYRNSIEydGVRFSHTINPVTGWPVVNNAPSVTVLHDTvALADAWATALTALPYTEALTLANAQ--GLMAM 322
                 154565555554223..24689***********778***************************988***********************64..57666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2704.54
//
Query:       EGE24734.1  [L=171]
Description: dihydrofolate reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-53  179.3   0.1      5e-53  179.1   0.1    1.0  1  DHFR_1       Dihydrofolate reductase
  ------ inclusion threshold ------
      0.095   11.9   0.0       0.13   11.5   0.0    1.1  1  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> DHFR_1  Dihydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   0.1   5.6e-57     5e-53       2     161 .]       7     168 ..       6     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 179.1 bits;  conditional E-value: 5.6e-57
                 EEEEEEEETT-EEEBTTB-SS--HHHHHHHHHHHTTCEEEEEHHHHHCC-.S--TTCEEEEE-S-TT---TTEEEESSHHHHC....CCCTTS..SEEE CS
      DHFR_1   2 islivAvaengvIGkdnklpwhlpeDlkrFkklTtgkpvimGrkTfeslgkrpLpnrkniVltrnedlkvegvevvssleeal....alakee.keevf 95 
                 ++++vA+++n++IGkdn+l+wh+p+Dl++Fk++T g  ++mGrkTfesl+ + Lpnr++iV+tr++   +eg+++++sl++a+    a+a+++ ++++f
  EGE24734.1   7 LVHVVAMSQNRAIGKDNQLLWHIPDDLQHFKRITHGGVIVMGRKTFESLP-NLLPNRTHIVITRQPI-GYEGAVTAHSLQDAIllakAYAHAKqQNKIF 103
                 789***********************************************.9************987.5689**********99987433333489*** PP

                 EEE-HHHHHHCGGG-SEEEEEEESS----SEE-----CCCEEEEEEEEE--CTTC-S-EEEEEEEE CS
      DHFR_1  96 viGGaeiYkqalpladklylTeidaefegdtffpeideeewelvereehekdeknkyaytfvtyer 161
                 +iGG+eiY+q l++ad l++Te+d+ +egdtf+p+ide ++ +++++++   +k++++++f t+++
  EGE24734.1 104 IIGGGEIYHQSLEMADVLEITEVDTVIEGDTFYPDIDE-KFIKTDETKTFYCDKSGFQFRFCTWQK 168
                 ************************************65.888888888888999**********96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.4e-05      0.13     115     186 ..      73     144 ..      67     151 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.4e-05
                  TCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHH...HHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 115 gipGvaenvgklvrtldsaealklkllpkrivvvGgGyi...GvElAaalaklgkevtlveardrllraldkels 186
                  g +G+  +++ l++++  a+a+ +++++++i ++GgG i   ++E+A +l    +    v  +d++++  d+++ 
   EGE24734.1  73 GYEGA-VTAHSLQDAILLAKAYAHAKQQNKIFIIGGGEIyhqSLEMADVLEITEV--DTVIEGDTFYPDIDEKFI 144
                  66677.788889999999*******************998889*****9999844..444556888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1397.85
//
Query:       EGE24735.1  [L=280]
Description: thymidylate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.8e-117  389.0   0.0   9.8e-117  388.8   0.0    1.0  1  Thymidylat_synt  Thymidylate synthase


Domain annotation for each model (and alignments):
>> Thymidylat_synt  Thymidylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.8   0.0  5.5e-121  9.8e-117       1     268 []       2     280 .]       2     280 .] 0.97

  Alignments for each domain:
  == domain 1  score: 388.8 bits;  conditional E-value: 5.5e-121
                      HHHHHHHHHHHHH-EEEE-TTSSEEEEEEEEEEEEEGGGCB----SSST--HHHHHHHHHHHHTT--BTHHHHTTT--TTHHHHHHT....... CS
  Thymidylat_synt   1 kqYldlvrkileeGeekedRtgtgtisvfgaqlrfdlsegefPllTtkkvflksvieEllWflsgetnvkeLqekgvkiWdewadee....... 87 
                      kqYl+l+++il++G++k+dRtgtgt+svfg+q+rf+l+eg fPllTtkkv++ks+i+EllWfl+getn+++L++++v+iW+ewa++e       
       EGE24735.1   2 KQYLELLQHILNHGTDKQDRTGTGTRSVFGYQMRFNLAEG-FPLLTTKKVHMKSIIHELLWFLKGETNTSYLTDNQVTIWNEWATAEqtarfgr 94 
                      79*************************************9.******************************************95555899999 PP

                      ..TB-SSSHHHHHHHBTST.......TTSSB-HHHHHHHHHHHSTT-ST-EEE---GGGGGGSSS--SEEEEEEEE..SEETEEEEEEEEEEEE CS
  Thymidylat_synt  88 ..gdlgpvYGkqwrkfkae.......egkkidqlakvidqlkenpdsRriivsawnpaeldkmaLppChvlfqfyvkdkkegkLslqlyqRSaD 172
                        g+lgp+YG+qwr+f+a+       +++++dq+a +i+++++np+sRr+ivs wnp+e  ++aLppCh+lfqf v+   +gkLs+qlyqRSaD
       EGE24735.1  95 aeGELGPIYGHQWRNFGASkksdgsyHDDGFDQIAWLINEINTNPNSRRLIVSGWNPTEAAEVALPPCHTLFQFFVS---QGKLSCQLYQRSAD 185
                      999*************99989999988999*****************************999**************4...457*********** PP

                      TTTHHHHHHHHHHHHHHHHHHHHT-EEEEEEEEEEEEEEEGGGHHHHHHHHTS---S--EEEE--SSTHSGGG--GGGEEEES----SXXXXXX CS
  Thymidylat_synt 173 vflGvpFNiasyalLthmlaqvtglkpgelihtigdaHiYsnhveqvkeqlereprelpklelnkekkvsiedfeledfelenYkphpkikakv 266
                      vflGvpFNiasyalLth++aqv+ l++ge+i+t gd+H+Y+nh+eqvk ql+rep +l++l+ln++ + si++f ++d+++ +Y++hp+ika+v
       EGE24735.1 186 VFLGVPFNIASYALLTHVVAQVCHLDVGEFIWTGGDTHLYQNHFEQVKLQLSREPLPLCSLRLNPKVR-SIFEFGFDDIQIADYQAHPAIKAPV 278
                      ****************************************************************7777.************************* PP

                      X. CS
  Thymidylat_synt 267 av 268
                      av
       EGE24735.1 279 AV 280
                      98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2376.79
//
Query:       EGE24736.1  [L=292]
Description: prolipoprotein diacylglyceryl transferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-71  238.2  13.3    8.7e-71  238.0  13.3    1.0  1  LGT       Prolipoprotein diacylglyceryl transferase
     0.0006   20.0   2.2     0.0006   20.0   2.2    2.5  2  DUF1294   Protein of unknown function (DUF1294)
  ------ inclusion threshold ------
      0.065   12.9   9.1        1.1    8.9   0.8    2.8  3  DUF4131   Domain of unknown function (DUF4131)
          3    7.8   4.4        2.3    8.2   0.0    2.8  3  YajC      Preprotein translocase subunit


Domain annotation for each model (and alignments):
>> LGT  Prolipoprotein diacylglyceryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.0  13.3   1.9e-74   8.7e-71       1     241 [.      10     278 ..      10     279 .. 0.86

  Alignments for each domain:
  == domain 1  score: 238.0 bits;  conditional E-value: 1.9e-74
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         LGT   1 pvafsigpleirwYgllialgfllavllakrrakkeglkeekdkvddlliyavilgii.GaRlgyvlfY....ylsnpleilkiwegGlaihGgligvl 94 
                 pva+++g +e++wYgl+++++f++a++la  r k+ +++   ++v dl++++  +g+i G+R+gyvl Y     ++npl ++++wegG+++hGg++gvl
  EGE24736.1  10 PVALDLGMIELHWYGLMYLFAFVVAYFLAWVRTKS-RTDFTPEMVSDLVFFGS-VGVIlGGRIGYVLLYnfgeLIANPLYLFRVWEGGMSFHGGFVGVL 106
                 799***99**********************99999.44443478*********.99999**********877656************************ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxx..............xxxxx RF
         LGT  95 lalllyakkkklsflkvlDivapvvalgqaigRlGNfingelyGkptdlpwg..................lvfkkaeelp..............lprhP 161
                 la++++a+k k   ++vlD++ap+v+ g+++gR+GNfingel+G+ + ++++                           p              lprhP
  EGE24736.1 107 LAMWYFAHKYKKAPFTVLDFIAPCVPTGLFFGRIGNFINGELWGRISYADVShlmyfpqaarvdfemiqaN--------PalqditaniggyllLPRHP 197
                 *******7779999******************************998888778866666666555544330........13333444444555577*** PP

                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
         LGT 162 tqlYes.lenlllflilllllskkkkkkkkdgevfglylilyglgRffiEflR.tds...lllgslrmgqllsiplvlagialli 241
                 +qlY++ +e++llf++l+++ +  k+  + + +v++++l++ygl Rf++Ef+R +d+   l++g ++ gql s+p+++ag++l++
  EGE24736.1 198 SQLYQAaTEGILLFVVLWWFSA--KP--RPRYAVSAVFLLVYGLSRFITEFFRqPDVgyaLIFGWMSKGQLYSLPMIIAGVVLMV 278
                 *******************554..22..4579************************7665767********************98 PP

>> DUF1294  Protein of unknown function (DUF1294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.35   1.5e+03      33      44 ..      58      69 ..      55      71 .. 0.82
   2 !   20.0   2.2   1.3e-07    0.0006      30      55 .]      96     121 ..      95     121 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.35
     DUF1294 33 lgGslGallgmr 44
                ++Gs+G++lg r
  EGE24736.1 58 FFGSVGVILGGR 69
                689****99976 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.3e-07
     DUF1294  30 lallgGslGallgmrlfrHKtkkksF 55 
                 +++ gG++G+ll+m +f HK kk++F
  EGE24736.1  96 MSFHGGFVGVLLAMWYFAHKYKKAPF 121
                 6789********************99 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.3   0.00027       1.2      32      64 ..      21      53 ..      11      75 .. 0.83
   2 ?   -0.6   0.2       0.2   8.9e+02      27      52 ..      91     116 ..      51     130 .. 0.59
   3 ?    8.9   0.8   0.00024       1.1      11      62 ..     204     255 ..     194     283 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00027
     DUF4131 32 vllllllllllallgfalrapqpnandlsqlle 64
                 + +l++l+++++++f++++++++++d+ + + 
  EGE24736.1 21 HWYGLMYLFAFVVAYFLAWVRTKSRTDFTPEMV 53
                5999**********************9988876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.2
     DUF4131  27 rprrrvllllllllllallgfalrap 52 
                  +   + ++ +++ +l++++++++ +
  EGE24736.1  91 VWEGGMSFHGGFVGVLLAMWYFAHKY 116
                 44555567777777777777766655 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00024
     DUF4131  11 alllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsql 62 
                 a+ ++ll++ l+++  +pr+r+++++ +ll+ +l+ f  +  +++   ++ +
  EGE24736.1 204 ATEGILLFVVLWWFSAKPRPRYAVSAVFLLVYGLSRFITEFFRQPDVGYALI 255
                 5556777777777777***************999999988888877766655 PP

>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0005       2.3       5      50 ..      26      72 ..      23      82 .. 0.77
   2 ?   -0.9   0.1      0.33   1.5e+03       7      21 ..     208     222 ..     207     225 .. 0.78
   3 ?   -2.0   0.5      0.77   3.5e+03       4      21 ..     267     284 ..     265     285 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0005
        YajC  5 plvlifvifyfllirpqqkkqkehkemlasLkk.GdeVvtigGivGk 50
                ++++ fv+ yfl + + + +   + em++ L   G+  v  gG +G 
  EGE24736.1 26 MYLFAFVVAYFLAWVRTKSRTDFTPEMVSDLVFfGSVGVILGGRIGY 72
                566889*********************99986424444556666665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.33
        YajC   7 vlifvifyfllirpq 21 
                 +l+fv+++++  +p+
  EGE24736.1 208 ILLFVVLWWFSAKPR 222
                 688999998887775 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.77
        YajC   4 lplvlifvifyfllirpq 21 
                 lp+++  v+++++ + +q
  EGE24736.1 267 LPMIIAGVVLMVMAYQKQ 284
                 467777777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2160.24
//
Query:       EGE24737.1  [L=542]
Description: chaperonin GroEL [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-99  332.2  16.2    8.5e-99  331.4  16.2    1.3  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.4  16.2  4.7e-103   8.5e-99       1     491 []      22     524 ..      22     524 .. 0.93

  Alignments for each domain:
  == domain 1  score: 331.4 bits;  conditional E-value: 4.7e-103
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHH....HHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPa....akllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegye 95 
                 lad+vk+tlGPkG+++++ +++g++++T+DG++++ke+e+e+      a+l++e+a+++++ +GDGTtt+++La+++l e+ k +aag++p ++++g++
  EGE24737.1  22 LADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSVAKEIELEDKFenmgAQLVREVASKTNDVAGDGTTTATVLAQAILVEGMKTVAAGMNPMDLKRGID 120
                 79************************************************************************************************* PP

                 HHHHHHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECEC..TTSEEESEEEESS--SS CS
  Cpn60_TCP1  96 kalekaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsl..edselveGlvldkgvls 192
                 ka+ +a+e++++i  + + +  d++++++v ++s++s+        +++l+ +A+           +g+ +v+++e+gs   +  e+veG+++d+g++s
  EGE24737.1 121 KAVRAAVEEIRAI--STPAN--DHKAIAQVGSISANSD------ATIGELISKAM---------ETVGKQGVITVEEGSGfeDALEVVEGMQFDRGYIS 200
                 **********999..88865..99**************......99*********.........679************986668999*********** PP

                 T.......TSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S-... CS
  Cpn60_TCP1 193 p.......dmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrv... 281
                 p       +++ +++n+ +ll+d++++  ++                        + +llek++++++++++++++++++al++l+ n +++  ++   
  EGE24737.1 201 PyfankqdSLTCEFDNPFILLVDKKISNIRE------------------------IVPLLEKVMQTSRPLLIIAEDVENEALATLVVNTLRGGLKTcav 275
                 *9998776667778*****************........................*************************************99999** PP

                 ........-HHHHHHHHHHHT--EBSCG.....GGGGCGC-EEEEEEEECCETTCCEEEEE...................................CES CS
  Cpn60_TCP1 282 ........kkkdlerlakatGatavssl.....edltpeelGtakkveeekigsekttiie...................................evk 332
                         +k++l+++a++tG+ ++s+      e+ + e+lGtakkv   +ig+e+t+i++                                     +
  EGE24737.1 276 kapgfgdrRKAMLQDIAILTGGVVISEEvglslETAEIEHLGTAKKV---TIGKENTVIVDgagdkasiearvesirrqveestsdydkeklqervAKL 371
                 ***************************9776656666667*******...***********88888888888877777777666666665555554339 PP

                 SSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHH CS
  Cpn60_TCP1 333 sgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlakl 431
                 sg++a+i++++at+t+++e++++++dAl+++++a+e e+vvpGGG++++++ ++l +  k ++++++ +i++ ++A+e++++++ +NaG ++  +++++
  EGE24737.1 372 SGGVAVIKVGAATETEMKEKKDRVDDALHATRAAVE-EGVVPGGGVALVRALSAL-SDLKGDNEDQNAGINILRRAMEAPLRQIVSNAGDEASVIVNEV 468
                 ************************************.******************.788889************************************* PP

                 HHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXXXX CS
  Cpn60_TCP1 432 raahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiikakk 491
                 ++   +g  ++g++++sg++ d++e g++Dp+kv+r+al++A+++a ++L+++ +i +k+
  EGE24737.1 469 KN--GSG--NYGYNAASGKYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTEVMITDKP 524
                 99..444..6**********************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4222.71
//
Query:       EGE24738.1  [L=96]
Description: co-chaperonin GroES [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-33  113.2   0.2    4.8e-33  113.1   0.2    1.0  1  Cpn10     Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> Cpn10  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.2   2.7e-37   4.8e-33       1      92 [.       2      93 ..       2      94 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 2.7e-37
                S-EE-TTEEEEEESGG-TTS-TT----HHHHHSEEEEEEEEE-T........TS-TTS--T-EEEEEGGGTSS-GG---.EEEEEGGG--EE CS
       Cpn10  1 kikplgdrVlvkraeeeekteggiilpdsakekpeqGvVvaVGegarnekgedvplevkvgdkVlfpkyagtkvkvdgkeylilkekdIlav 92
                ki+pl+dr++v+r eee+kt+ggi+lp sa+ekp+qG+V+a G+g ++++ge  pl+v vgd Vlf +y+g++vkvdg+e+lilke+d+l+v
  EGE24738.1  2 KIRPLHDRIVVRRTEEEQKTAGGILLPGSAAEKPQQGEVIAAGNGLVRDNGEVRPLDVAVGDVVLFGQYSGQTVKVDGEELLILKESDVLGV 93
                79****************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 828.07
//
Query:       EGE24739.1  [L=242]
Description: hypothetical protein EA1_07222 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.4e-24   85.4   0.3    6.6e-24   85.1   0.3    1.0  1  DUF3108     Protein of unknown function (DUF3108)
     0.0082   16.1   0.2      0.016   15.2   0.2    1.4  1  Big_10      Bacterial Ig domain
  ------ inclusion threshold ------
       0.15   12.5   0.0       0.89   10.0   0.0    2.0  2  Spore_II_R  Stage II sporulation protein R (spore_II_R)


Domain annotation for each model (and alignments):
>> DUF3108  Protein of unknown function (DUF3108)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.3   1.1e-27   6.6e-24       5     224 ..      32     240 ..      27     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 1.1e-27
     DUF3108   5 aaaaaaaaaanaf.pGetltYrvsygglnageatlsve.tdpvyrisltarttglldlffkvrdtlesydsgrlvPsrfrkkareggkkkveevtfarg 101
                 ++aaa aa    + +G+ +tYrvs+ g ++g+at +++ t+++yr+ + ar +g++ l    + +++ +  g++ P+++ ++ar  g   + +v+f + 
  EGE24739.1  32 LPAAAMAA----DlTGYSATYRVSADG-KTGTATRTLTkTGNNYRYTVNARAAGIATLT--QEANFSLV-NGNIIPQSSMMSARILGIGNTHSVRFNHA 122
                 45554444....3478***********.**********77****************877..44444443.489***********************666 PP

     DUF3108 102 akkerdvepekdrtislpagvqDplsalyylrtsklkvgds.itlpvfdgrkrydlklkvlgretvktplgkyetlkvrpvvreagvfkekrdievWla 199
                 +k   ++ + k  t+ +p+ ++D ls+  ++r ++l  g+   +++++  +++++ k++ +g  ++++p+g+y+t+++ +  +     +++r++++Wla
  EGE24739.1 123 NKSAVSTYKGKPVTLAMPKPAYDDLSLETQIR-QELINGKFnGSYQLVKRDQIETTKFRRAGHGKITVPAGTYDTVRIDRIHD-----DQNRATSFWLA 215
                 666666666899999*****************.566667445****************************************8.....9********** PP

     DUF3108 200 ddanriPvrieadlkvGs.vtaeLts 224
                 +  n++Pv+++ + + G+ + +eLt+
  EGE24739.1 216 PSLNYLPVKVSQTAD-GKvIFMELTK 240
                 ***********9999.**88899986 PP

>> Big_10  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   2.7e-06     0.016      26     114 ..      40     125 ..      21     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.7e-06
      Big_10  26 deeGkevegelsadktsWtstekl.gygttYtltakakdadgkavektssftTvapaktvsatltpedgstvGvgqpisikFdkpvedka 114
                 d  G   + ++sad+++ t+t+ l ++g++Y++t +a++a+  + +++++f+ v+ +  +  + ++   +  G+g++ s++F+++  +k+
  EGE24739.1  40 DLTGYSATYRVSADGKTGTATRTLtKTGNNYRYTVNARAAGIATLTQEANFSLVNGN--IIPQSSMMSARILGIGNTHSVRFNHA--NKS 125
                 55788888999**********9994578999999999999999999*****998765..566677778899***********986..444 PP

>> Spore_II_R  Stage II sporulation protein R (spore_II_R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.22   1.3e+03      59      81 ..      57      79 ..      36      96 .. 0.80
   2 ?   10.0   0.0   0.00015      0.89      75     104 ..     171     200 ..     138     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.22
  Spore_II_R 59 eiaeevlekegvdykvkvelgke 81
                 +a+++l+k+g +y+++v+ + +
  EGE24739.1 57 GTATRTLTKTGNNYRYTVNARAA 79
                57889999999999999987665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00015
  Spore_II_R  75 kvelgkeyfpekeYgdltlpaGeYealrve 104
                 + ++++++f +  +g++t+paG+Y+++r++
  EGE24739.1 171 RDQIETTKFRRAGHGKITVPAGTYDTVRID 200
                 3468889999999**************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1860.09
//
Query:       EGE24740.1  [L=143]
Description: hypothetical protein EA1_07227 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0063   16.7   8.8     0.0098   16.1   8.8    1.4  1  DUF2069   Predicted membrane protein (DUF2069)
  ------ inclusion threshold ------
      0.045   13.5   0.2      0.085   12.6   0.2    1.5  1  DUF2937   Protein of unknown function (DUF2937)


Domain annotation for each model (and alignments):
>> DUF2069  Predicted membrane protein (DUF2069)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   8.8   1.1e-06    0.0098      16      92 ..      35     119 ..      19     131 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-06
     DUF2069  16 welvlaplrelp...gglvlalkllpLllplpGllkgk.aytyaWasflillYf.vegvv...ralsdegerllallevllslll 92 
                 + + ++ +++++   g+ v  l l+p l++ p + +gk +y++ W+s+++l+Y+ + gv+   r+++++  ++ a+  + + lll
  EGE24740.1  35 YPVAVSLTTDASlwaGVGVQSLALVPALIFTPTIHQGKsPYALMWVSMIMLIYLgASGVLtllRIYEQSPMAVAAAKLIEFLLLL 119
                 333333333333111444557999999********98648**************6455541115566666333333333333333 PP

>> DUF2937  Protein of unknown function (DUF2937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   9.5e-06     0.085      92     154 ..       3      65 ..       1      72 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.5e-06
     DUF2937  92 elqalqqasllerlvvllraadaeileetlenfspavpltpeglafglvgalllallvellla 154
                 ++qal++ ++++ + + lr + +  +  tl  +  av+lt ++ +++ vg+  lal+  l+++
  EGE24740.1   3 QSQALRRIKPIKPVHQALRITWYAWIFMTLVGYPVAVSLTTDASLWAGVGVQSLALVPALIFT 65 
                 7788999899999999999999999999**************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1131.93
//
Query:       EGE24741.1  [L=201]
Description: flavodoxin/nitric oxide synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-09   37.6   0.0    2.4e-09   37.1   0.0    1.3  1  FMN_red       NADPH-dependent FMN reductase
    0.00018   21.3   0.0    0.00021   21.0   0.0    1.3  1  Flavodoxin_2  Flavodoxin-like fold
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.22   11.7   0.0    1.6  1  Flavodoxin_1  Flavodoxin


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0     4e-13   2.4e-09      67     141 ..      64     139 ..      15     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 4e-13
                 HHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-.SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHH.HTT-E CS
     FMN_red  67 lekiaaadaliivtPeYngsysgllKnalDrlsrtrgkkelrgKpvalvavgggrrgglraeeqlrqvla.elgai 141
                  + ++a+++l +++P+++g++s+ lK ++D ++ ++    l+gKp+ +++++g+++gg++ +   + +   ++g+ 
  EGE24741.1  64 ADELRACSGLAMGSPTHFGNMSASLKYFWDNTVSIWLAGDLQGKPACVFTTSGSMHGGQESTLLTMMMPLlHHGML 139
                 578999****************************************************998876666554456665 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.6e-08   0.00021      65     174 ..      58     150 ..       1     173 [. 0.67

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.6e-08
                   HHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHHHHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHH CS
  Flavodoxin_2  65 adveseqiekllaadaivlqfPlwwfgvPailKgwiDrvltagfafyteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpplrgi 161
                    d +  + ++l+a+  + +++P ++ +++a lK + D+ ++               g L+gk+a v +t+G+  +  q    e   + +++p l++ 
    EGE24741.1  58 GDLYCTA-DELRACSGLAMGSPTHFGNMSASLKYFWDNTVSIWL-A----------GDLQGKPACVFTTSGSM-HGGQ----ESTLLTMMMPLLHHG 137
                   4445556.99****************************977633.3..........6799*************.4433....444455555448888 PP

                   HHHTT-EEEEEEE CS
  Flavodoxin_2 162 lgfiGikdvepvl 174
                   + ++G+ + +p l
    EGE24741.1 138 MLLMGLPYAHPEL 150
                   8888888877765 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.6e-05      0.22       1      41 [.       8      47 ..       8     120 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.6e-05
                  EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGG CS
  Flavodoxin_1  1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydesls 41
                  +lY++++  t++lA  +a++++++g++a++ ++ +++ + s
    EGE24741.1  8 VLYDTNQDATKNLAYLIAQGIHDAGLRAMIRRVPKVSAV-S 47
                  89**************************99999998864.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1430.21
//
Query:       EGE24742.1  [L=500]
Description: putative ribonuclease BN [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-58  197.4  23.7    4.2e-58  197.0  23.7    1.1  1  Virul_fac_BrkB  Virulence factor BrkB


Domain annotation for each model (and alignments):
>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.0  23.7   2.3e-62   4.2e-58       2     254 ..      28     275 ..      27     277 .. 0.93

  Alignments for each domain:
  == domain 1  score: 197.0 bits;  conditional E-value: 2.3e-62
  Virul_fac_BrkB   2 eddlsllAaalayytllSlfPlllvllavlgllglddelqeqlldllaevlpegaaevvedilqrllnqa.slgllglavllwsasggvsalrra 95 
                     +dd  + Aa+l+y+tll+l+P+l+v+l +++ ++  + l+eq+++ ++ +l ++a e+v ++++++++++ +lgl+g+a+l+++a++ +++++ a
      EGE24742.1  28 DDDTQQKAASLTYTTLLALVPILTVVLVIFSSVPALEGLREQVQQTISANLFPTASEQVAGYIRSFAEKSsNLGLVGVAGLFVTAIMTLNTIEYA 122
                     688999************************9866688**********999555588*******99998888************************ PP

  Virul_fac_BrkB  96 lnkiygveesrsflrkrllsllllllllvllllslvlsvflqslllasapllglglelsell.llqllrwlvallllvlafallYrvlpnvkvrl 189
                     +nki++v+e+ +   ++++++++++l++v+l++++ +s+++qs+      +l+ +  ++ ++  + ++ +lv+l+l+++ f+llY+++p+++v++
      EGE24742.1 123 FNKIWRVQERSGGAASIIRYWTIITLGPVILGVAFGASSAIQSMD-----FLNRQ--IAGYGiDWGIWAYLVSLALMTCGFILLYWFIPKAQVPI 210
                     *********99********************************32.....33433..33444569****************************** PP

  Virul_fac_BrkB 190 raalpGallaallwllvkilfslylsnfasynaiYGslgaliilllWlylsalilLlGaelnael 254
                     + a+++++++a+l++  k++f+  ++nf sy+aiYG+++al+i+llWly+s+ ++LlG++++++l
      EGE24742.1 211 KNAAIAGIVTAILFESIKQVFGTVMTNFTSYEAIYGAFAALPIFLLWLYISWNLILLGVQISYTL 275
                     *************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3726.16
//
Query:       EGE24744.1  [L=56]
Description: hypothetical protein EA1_07002 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 474.07
//
Query:       EGE24745.1  [L=60]
Description: hypothetical protein EA1_07007 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 523.67
//
Query:       EGE24746.1  [L=38]
Description: hypothetical protein EA1_07012, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-07   29.4   1.7      8e-07   29.4   1.7    1.0  1  PT-HINT   Pretoxin HINT domain


Domain annotation for each model (and alignments):
>> PT-HINT  Pretoxin HINT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   1.7   4.5e-11     8e-07     108     137 .]      10      34 ..       2      34 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.5e-11
     PT-HINT 108 kaynlkvadfhtyfvkgnraeteGvlvhna 137
                  +yn++v+dfhty+++     + Gv+vhna
  EGE24746.1  10 TVYNFEVQDFHTYHIG-----EYGVWVHNA 34 
                 69**************.....89******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 295.30
//
Query:       EGE24901.1  [L=244]
Description: pirin-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-33  114.7   0.2    3.1e-33  114.0   0.2    1.4  1  Pirin      Pirin
    1.6e-25   89.1   0.1    4.1e-25   87.8   0.0    1.7  2  Pirin_C_2  Quercetinase C-terminal cupin domain
  ------ inclusion threshold ------
      0.099   12.4   0.0       0.31   10.8   0.0    1.8  2  Cupin_2    Cupin domain


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.2   5.2e-37   3.1e-33       7     108 .]      10     120 ..       4     120 .. 0.94

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 5.2e-37
                 GTCC...TTCCEECTCEECCEEESS.S.ETT.....EEEE..T-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-S CS
       Pirin   7 algk..aaelqsvdpFlfldefdpaelevge.....edvi..gagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmnee 96 
                 ++g   + +l+s+++F+f++++dp+++ +g      +d +  g+gf+ hph+++e++++ l+G + h+Ds+Gn + i++Gd+q+m+Ag+Gi+hsEmn +
  EGE24901.1  10 SRGDaeHGWLKSRHTFSFAEYYDPQRMGFGVlrvinDDCVegGMGFGRHPHQDMEIISLPLSGDLAHKDSMGNGSIIKNGDIQVMSAGTGITHSEMNAN 108
                 44445589**********************9999988999*99******************************************************** PP

                 SSS-EEEEEEEE CS
       Pirin  97 eeesleglqlWv 108
                 +++++++lq+Wv
  EGE24901.1 109 ADKPVKFLQIWV 120
                 ***********8 PP

>> Pirin_C_2  Quercetinase C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.1   1.3e+04      15      27 ..      60      72 ..      60      77 .. 0.79
   2 !   87.8   0.0   6.8e-29   4.1e-25       2      86 .]     148     233 ..     147     233 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.1
   Pirin_C_2 15 nQdarlyaaklde 27
                +Qd+++  + l++
  EGE24901.1 60 HQDMEIISLPLSG 72
                8999998887765 PP

  == domain 2  score: 87.8 bits;  conditional E-value: 6.8e-29
   Pirin_C_2   2 vaSpdgrdgslkinQdarlyaakldegesleyela.agrkaYlqvieGevevngeslaagDGlaiedesslsltaeedaevLlfDl 86 
                 ++Sp+++d+ ++i+Qda++++a++d+++s  y+++ +g+++Y++vi+G++++ +++l ++DGl+i+d++ ++lta++da+vLl+D+
  EGE24901.1 148 ILSPNADDDGVWIHQDAWFSLANFDKDTSRYYQIKkSGNGVYVFVIKGSANIGDRQLGERDGLGIWDTDGFELTATSDAQVLLMDV 233
                 89********************************98899**********************************************7 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.3e-05      0.31       8      70 ..      51     118 ..      47     120 .. 0.83
   2 ?   -2.0   0.0      0.52   3.1e+03      24      31 ..     191     198 ..     185     234 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.3e-05
                 TE.EEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT..-EEEEEE.-SSS-EEEEEE CS
     Cupin_2   8 Ge.sapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpag..tpHrfrN.tgdeparllvv 70 
                 G+  +++h H++ + +   l+G ++ +   g+  +++ Gd+ +  ag    H   N + d+p+++l +
  EGE24901.1  51 GGmGFGRHPHQDMEIISLPLSGDLAHKdSMGNGSIIKNGDIQVMSAGtgITHSEMNaNADKPVKFLQI 118
                 555999*******999999****9999888999*************977777776636666**99866 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.52
                 EEEESEEE CS
     Cupin_2  24 yVleGege 31 
                 +V++G + 
  EGE24901.1 191 FVIKGSAN 198
                 55555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1741.67
//
Query:       EGE24902.1  [L=542]
Description: phosphate transporter family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-110  369.7  27.8   1.2e-110  369.7  27.8    2.3  2  PHO4      Phosphate transporter family


Domain annotation for each model (and alignments):
>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.6       0.1   1.8e+03     118     156 ..      24      58 ..       6      70 .. 0.41
   2 !  369.7  27.8  6.7e-115  1.2e-110       1     337 []      71     531 ..      71     531 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.1
        PHO4 118 ivlswvlsPllggiiaallfllvkrlilvkeklknalra 156
                 i++ +++  ll+g+  +++ + + +++      +  l +
  EGE24902.1  24 IAVNLFFGLLLAGMSIYFIQWGLVYTMH----QQVLLFM 58 
                 4444444444444444444333333311....1111112 PP

  == domain 2  score: 369.7 bits;  conditional E-value: 6.7e-115
        PHO4   1 iGanDvanafatsvgskaltlrqAvilaaifeflGavllGaeVaetirkgivdvelf..dpselmlgmlaallgaavwlllatvlglPvStthslvGal 97 
                 iG nDvan+f+tsvg+++l+++qA+++aaife++Gavl+Ga+V++tir+givd+ +   +p++++++ml+al++aa+wll+at  glPvStth+++G++
  EGE24902.1  71 IGGNDVANSFGTSVGAGTLSVTQALAVAAIFEVSGAVLAGAAVTDTIRSGIVDIGQLgvSPNQFIYLMLSALVAAAFWLLFATKRGLPVSTTHAIIGGI 169
                 79***************************************************998889**************************************** PP

        PHO4  98 iGaalaa........eggeavkwkklvkivlswvlsPllggiiaallfllvkrl............................................. 143
                 +G ++++         ++++vkw+k+ +i+lswv+sP+lgg++++ll+ ++k+                                              
  EGE24902.1 170 VGSSIVLgisiggvdFAFSTVKWSKIRDIALSWVISPVLGGALSYLLYSIIKKNilayndkaelvvktikakkkalkreqkeyfetlddkeklpytnal 268
                 ***********99765579******************************99999666666666666666666666666665555555555555555555 PP

        PHO4 144 ilvk.................................eklknalralpvlvlvtiailalsilfkge................................ 177
                    +                                 ++lk+ ++++p+++++ ++i++++++fkg                                 
  EGE24902.1 269 L--RdqeafkdgdcqrddletqyyraifdlerrrdnlDTLKALKTWVPLIAALGAVIMTAMVVFKGLantglqlsilqaglvmgmlgalvwltafiytk 365
                 0..04555555555555555566666777777889999***************************7667777777777777777777777777777777 PP

        PHO4 178 ......skkddeeteklfkflqvvsaalvsfahGanDvanaiGpllaalisiyk...a.sk.evplwvlllgglaialGlllgGkrviktvGekitkkl 265
                       ++  +++t  +f+++qv++a++++f+hG+nD+ana+Gp+ +a+++++k   + ++ +vp  v+l++g+++++Gl+++Gk+vi+tvG+++t+ +
  EGE24902.1 366 tirgkhKEALGKATFVMFSWMQVFTACAFAFSHGSNDIANAVGPF-VAIMDVIKnnaVeAQaTVPAPVMLTFGVSLIVGLWFIGKEVIQTVGTNLTE-M 462
                 66665333889999999****************************.8999*9999863666699********************************5.* PP

        PHO4 266 tpsrGfaaelaaaltvllasklglPvStThvlvgavvGvGlakkresavnwklvrnivlaWvlTlpvsalls 337
                 +p++Gf+aelaaa++v+ as lg+PvS+Th+lvgav+G+Gl++k   + nw+l++ i laWv+Tlp++a++s
  EGE24902.1 463 HPASGFSAELAAAAVVMGASSLGIPVSSTHILVGAVLGIGLVNK---NTNWRLMKPIGLAWVITLPAAATIS 531
                 *******************************************4...9*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1058  (0.0590105); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 4072.44
//
Query:       EGE24903.1  [L=304]
Description: 4-hydroxybenzoate polyprenyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-55  188.7  24.7    1.3e-55  188.4  24.7    1.1  1  UbiA      UbiA prenyltransferase family
  ------ inclusion threshold ------
       0.24   11.6   3.3        7.5    6.9   0.0    3.3  3  DUF2644   Protein of unknown function (DUF2644)


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4  24.7   1.5e-59   1.3e-55       2     246 ..      35     281 ..      34     295 .. 0.87

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 1.5e-59
        UbiA   2 lipalvg...lalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgl 97 
                 l p+l++   + ++ +  p+++++++++lg++l++aa++a+Nd++Dr+ D +++rt  RPl++Gr+spk+a++++i l +l++ ll ++l   +++++l
  EGE24903.1  35 LHPTLWAlflVYASKNALPNFWHIVIFALGAILMRAAGCAINDFADRKVDGQVKRTHARPLADGRLSPKTAVLTFIGLSLLAACLL-FFLPKSVFYWSL 132
                 568999965344444555566*****************************************************************.************ PP

        UbiA  98 lalllyvvYtglrlKrrtllgtvvggiafglppllgwaavtgslsllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaarillalll 196
                  a+ll+++Y+  ++Kr+t ++++v+++afg++++++++av+g  +l++++l++a +++t+a+++ +++ dr++D+k+g+k++++++Gr ++ i++ l l
  EGE24903.1 133 GAVLLAFIYP--FMKRFTNIPQLVLAAAFGWAIPMAFVAVQGAPDLWTWVLFIAYMCWTVAYDTEYAMCDRDDDLKIGVKSTAILFGRYDVTIIIGLNL 229
                 **********..*********************************************************************************955555 PP

        UbiA 197 avllla.llllllallll.lylllalllaalallraarlvrrrdakkaakff 246
                 ++++l+ + ++ ++  l+ ++ ++++  ++++++r+++l+++r++ ++  +f
  EGE24903.1 230 IFTVLMsVSFWHYFDDLPkWLCIMTFMPVLAMFFRQYQLIANRERLACFIAF 281
                 5555555445555555550555556667777788899999999999888777 PP

>> DUF2644  Protein of unknown function (DUF2644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.57   5.1e+03      30      49 ..      43      62 ..      38      66 .. 0.67
   2 ?    6.9   0.0   0.00084       7.5       6      30 ..      96     121 ..      95     127 .. 0.88
   3 ?    3.5   0.2    0.0093        83      19      39 ..     177     197 ..     172     199 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.57
     DUF2644 30 yavyldrpyveelfmtfaif 49
                + vy  +   ++++  ++++
  EGE24903.1 43 FLVYASKNALPNFWHIVIFA 62
                56777777777777766554 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00084
     DUF2644   6 kdGrlS.TTafiQFfgalllagiLvy 30 
                 +dGrlS  Ta + F+g  lla+ L++
  EGE24903.1  96 ADGRLSpKTAVLTFIGLSLLAACLLF 121
                 69****55*********999999987 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0093
     DUF2644  19 fgalllagiLvyavyldrpyv 39 
                 + ++l  + ++++v +d  y+
  EGE24903.1 177 WTWVLFIAYMCWTVAYDTEYA 197
                 899**************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2312.97
//
Query:       EGE24904.1  [L=87]
Description: hypothetical protein EA1_06466 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.093   12.7   0.2       0.12   12.4   0.2    1.4  1  MraZ      MraZ protein, putative antitoxin-like


Domain annotation for each model (and alignments):
>> MraZ  MraZ protein, putative antitoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   6.5e-06      0.12      37      60 ..      30      53 ..      17      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.5e-06
                CCSEEEEEEHHHHHHHHHCHHTS- CS
        MraZ 37 vsncLeiwpraeWekyeeelaees 60
                +++ L++++++eW +y +  a ++
  EGE24904.1 30 LEDALFVYKKQEWLEYAQSQANLP 53
                7899*************9955554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 655.55
//
Query:       EGE24905.1  [L=271]
Description: hypothetical protein EA1_06471 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-36  124.0   0.0    7.5e-36  123.7   0.0    1.1  1  SAM_MT         Putative SAM-dependent methyltransferase
    0.00029   20.5   0.0    0.00051   19.7   0.0    1.5  1  Cons_hypoth95  Conserved hypothetical protein 95
  ------ inclusion threshold ------
      0.046   12.9   0.1      0.058   12.6   0.1    1.2  1  UvdE           UV-endonuclease UvdE
       0.14   11.7   0.0        1.9    8.0   0.0    2.1  1  MTS            Methyltransferase small domain


Domain annotation for each model (and alignments):
>> SAM_MT  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.0   1.7e-39   7.5e-36      36     229 ..      71     260 ..      38     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 123.7 bits;  conditional E-value: 1.7e-39
      SAM_MT  36 gavlvdfvsgaaahRrkfgggrgeaiakavglkkgvlptvlDaTaGlGrDafvlaslGckvtliErhpvvaaLLedglkRakqdaeigellaerlkLla 134
                 + ++  +  +a++hR   +g+++e i +a++ ++g+  tvlD+TaG+G+Da +las G++vtl+E +pv+a LL    +  +q a+ +  l  r+++++
  EGE24905.1  71 TIIKSTLNWSALQHRIVTAGRKSELILQACKPQAGM--TVLDGTAGFGHDALILASSGAHVTLCESNPVMALLLYYEYQAMAQVANWQG-LLGRMDIIY 166
                 356666777899********************9988..9*************************************9999999998877.999*****9 PP

      SAM_MT 135 asslealakleeekpdvvYlDPmyPhkkksalvKKemrvfqqlvG..adedadeLleaalalak..kRvvVKrPkkaevlaekkpsasietkkhRfDiY 229
                 +++ e+    +  + d vYlDPm+P+++ +a v K+m+ +++l    ++++a++++  ++++ k   R+++KrP  a+++ ++ p++si+    RfD Y
  EGE24905.1 167 KDTSEM----TG-EFDCVYLDPMFPKDSYKAKVNKQMQALHELAAppTQSEAHQIFCRSMNMIKpnGRLIIKRPIGAPYFVQQPPNHSIQNDALRFDRY 260
                 998754....44.6899**************************98335678999*999999875337******************************99 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.1e-07   0.00051      42     136 ..     105     201 ..      88     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.1e-07
                    C-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH....HHHHH CS
  Cons_hypoth95  42 garvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakell...ieevle 134
                    g +vLD  aG G  +l  +S g ++++l e+++ ++ +l  + +++   ++++ l       ++ +++ ++efd v+lDP + k+ +   +++ ++
     EGE24905.1 105 GMTVLDGTAGFGHDALILASSG-AHVTLCESNPVMALLLYYEYQAMAQVANWQGLLGRMDIIYKDTSEMTGEFDCVYLDPMFPKDSYkakVNKQMQ 199
                    6679999999999999889999.689*********************9999********************************9987333344444 PP

                    HH CS
  Cons_hypoth95 135 ll 136
                    +l
     EGE24905.1 200 AL 201
                    44 PP

>> UvdE  UV-endonuclease UvdE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.3e-05     0.058     181     224 ..       3      45 ..       1      85 [. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
        UvdE 181 lvLENDdksytvadlLpvceelniPlVlDyHHhnvldlreesld 224
                 l L  D     v++lL++c++ ++Pl   +H hn l+ +++ l+
  EGE24905.1   3 LSLIYDKPNTVVDELLSICQAYDLPLDWAVHRHNKLN-DKQILQ 45 
                 6666676777799******************998773.333333 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00042       1.9      20     111 ..      93     189 ..      88     243 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00042
                 HHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESB.HHHHHHHHHHHHHTTGC........EEEEE-STTTTSTTS-EEEEEE---STT CS
         MTS  20 sklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvd.arAlesakenleankle........vevvasdvleeveekkfdlivsNPPfha 109
                 s+l+l++ + ++  +vlD  +G+G  ++ la+   +  vtl++ +  +Al +  e  +  +++        ++++ +d  e +  ++fd++   P f +
  EGE24905.1  93 SELILQACKPQAGMTVLDGTAGFGHDALILASSGAH--VTLCESNpVMALLLYYEYQAMAQVAnwqgllgrMDIIYKDTSEMT--GEFDCVYLDPMFPK 187
                 789999999999999*************99997777..899998845777765444444443334455555556666654444..47787777777765 PP

                 TC CS
         MTS 110 gk 111
                 ++
  EGE24905.1 188 DS 189
                 54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1978.71
//
Query:       EGE24906.1  [L=280]
Description: undecaprenyl pyrophosphate phosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-74  251.5  16.9    1.2e-74  251.3  16.9    1.0  1  BacA      Bacitracin resistance protein BacA


Domain annotation for each model (and alignments):
>> BacA  Bacitracin resistance protein BacA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3  16.9   6.6e-79   1.2e-74       1     256 []       9     266 ..       9     266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 251.3 bits;  conditional E-value: 6.6e-79
        BacA   1 aiilGivqGltefLPvSSsGhlilveellgleked.lllfdvvihlGtllAvlvlfrkdilrllkgllkslkkkkkekeelrlllliivatipaailgl 98 
                 aii+G+v+G++efLP+SS+G lil  +++++ + +  +lf v+i+lG++lAv++ ++ +++  + gl++  + +   ++ ++l + +++a++p++++g+
  EGE24906.1   9 AIIMGVVEGIAEFLPISSTGYLILSADIMNFLSGEfRNLFIVFIQLGAILAVIYDYWGRLWGAFIGLVTGHSPD--LTKPRQLGFSLMIASLPVVVVGF 105
                 79***************************9874444799***********************999988876654..68999999*************** PP

        BacA  99 llkdlieellrsplvvaialivtglllllaeklrkk.kkksledltlkdalliGlaQalAllPGvSRSGaTivaglllglsreaaaefSFllaiPailg 196
                 ++ d+i+++l++plvva++li+++l++++aek  +  ++ + e++++k+al iGl+Q+lAl+PG+SRSG+Ti+++lllg+sr+aa+efSF+l+iP+i+g
  EGE24906.1 106 TMADFITNALFHPLVVATMLILGALIIIYAEKNPRPiHAPEAENISFKTALGIGLCQCLALIPGTSRSGSTIIGALLLGTSRKAATEFSFFLGIPVIIG 204
                 *******************************6544456666689******************************************************* PP

        BacA 197 agllkllksa.ealtaselll.lvgfvvafvvallaikfllkllkkkklkvFaiYrivlGll 256
                 a+ll+l+k+  +  t +++l+ l+g+ v+fv+all+i++++ ++++k++++Fa+ ri+ G+l
  EGE24906.1 205 AALLDLIKHFdAIQTLTDWLIlLIGTGVSFVIALLCIRLMVAWVSQKDFMIFAWLRIATGVL 266
                 *****9999843334457888899***********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2169.60
//
Query:       EGE24907.1  [L=228]
Description: putative Zn depedente glycoprotease M22 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-18   65.5   0.1    2.2e-17   63.7   0.0    1.7  2  Peptidase_M22  Glycoprotease family


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   1.2e-21   2.2e-17      30     134 ..      37     140 ..      30     154 .. 0.87
   2 ?   -1.1   0.0     0.067   1.2e+03     221     267 ..     185     220 ..     171     222 .. 0.69

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.2e-21
                    HHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCCHCTSEC.SSC.EEEEESSSTEEEEEECT CS
  Peptidase_M22  30 serllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaarleeke.efP.vvllvsGghtqvylvke 123
                    +e++l+l++eal++ +++l+++d+ a+ +gPG f g+r+  ++ ++l++a++  +vgV++l a+a +a+  ++  e   + ++++++++qvy++  
     EGE24907.1  37 TEIILSLVDEALSQTNIKLSNIDCLAFNRGPGAFSGIRINTTVVQALSVAHETLCVGVSSLTALADTAHQIHRFaESSyITAVMDARQNQVYAG-- 130
                    799***************************************************************9984444454447**************9.. PP

                    TEEEEEEEESS CS
  Peptidase_M22 124 gryeilgetld 134
                     ++ i  ++++
     EGE24907.1 131 -NFMIKHDNIQ 140
                    .6655555554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.067
                    HCTBSEEEEESGGGGXHHHHHCHCCHHHHTTSEEEXXXHHHHSSXCH CS
  Peptidase_M22 221 lpkakelvilGGvaankrLrealeeeaeelglkliiPplkyctdnaa 267
                    +p+a++++ l    a+  ++++++  ae++      P   y++dna 
     EGE24907.1 185 QPTASDIARL----AWGEYQQGHAVRAEHA-----LPV--YLRDNAW 220
                    4777777777....7777788887555555.....899..9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1853.30
//
Query:       EGE24908.1  [L=514]
Description: signal recognition particle protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-73  245.3   0.8    7.9e-73  244.3   0.8    1.5  1  SRP54            SRP54-type protein, GTPase domain
      9e-31  106.4   2.4      9e-31  106.4   2.4    4.1  3  SRP_SPB          Signal peptide binding domain
    5.4e-20   71.4   3.8    6.3e-20   71.2   0.1    3.0  2  SRP54_N          SRP54-type protein, helical bundle domain
    1.5e-06   27.6   0.1    3.4e-06   26.5   0.1    1.6  1  Zeta_toxin       Zeta toxin
    1.7e-06   28.1   0.5    6.7e-06   26.2   0.2    2.2  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    1.1e-05   25.2   0.3    2.9e-05   23.9   0.3    1.7  1  AAA_30           AAA domain
      2e-05   24.9   0.1    7.6e-05   23.0   0.0    1.9  2  AAA_22           AAA domain
    0.00013   21.6   0.2    0.00031   20.4   0.2    1.6  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    0.00017   21.6   1.2     0.0009   19.2   1.2    2.2  1  AAA_31           AAA domain
      0.002   17.5   1.9     0.0034   16.8   0.1    2.1  2  DnaB_C           DnaB-like helicase C terminal domain
     0.0048   16.8   0.0      0.011   15.6   0.0    1.6  1  APS_kinase       Adenylylsulphate kinase
     0.0067   16.8   0.2      0.027   14.9   0.0    2.2  1  AAA_16           AAA ATPase domain
     0.0072   15.8   0.0      0.019   14.5   0.0    1.8  1  ParA             NUBPL iron-transfer P-loop NTPase
  ------ inclusion threshold ------
      0.013   14.7   0.3      0.055   12.6   0.1    2.1  2  PLU-1            PLU-1-like protein
      0.014   15.4   0.0      0.051   13.6   0.0    2.0  1  AAA_5            AAA domain (dynein-related subfamily)
      0.015   15.5   0.0      0.031   14.4   0.0    1.6  1  AAA_33           AAA domain
      0.017   14.5   2.3      0.031   13.6   0.1    2.3  3  ATPase           KaiC
      0.021   14.1   0.0      0.048   12.9   0.0    1.6  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.057   12.8   0.2       0.17   11.3   0.0    1.9  2  KTI12            Chromatin associated protein KTI12
      0.062   13.7   4.2      0.083   13.3   0.1    2.8  2  AAA_17           AAA domain
      0.064   13.3   1.1       0.35   10.8   0.2    2.3  2  ResIII           Type III restriction enzyme, res subunit
      0.069   13.7   0.4       0.48   10.9   0.0    2.5  2  ABC_tran         ABC transporter
      0.073   13.2   2.7       0.28   11.3   0.6    2.9  2  MMR_HSR1         50S ribosome-binding GTPase
      0.081   13.5   0.7       0.33   11.5   0.3    2.3  2  AAA_18           AAA domain
      0.081   13.6   2.0         83    4.0   0.0    3.8  3  LIN52            Retinal tissue protein
      0.083   12.8   0.6        3.5    7.5   0.1    2.5  2  NTPase_1         NTPase
      0.087   12.5   1.3       0.17   11.5   0.1    2.2  1  Thymidylate_kin  Thymidylate kinase
      0.095   11.9   6.9        1.4    8.1   0.0    3.7  4  ArsA_ATPase      Anion-transporting ATPase
        0.1   12.4   0.2       0.24   11.2   0.2    1.7  1  Helicase_RecD    Helicase
       0.19   12.2   4.2       0.16   12.4   0.4    2.8  2  AAA              ATPase family associated with various cellul
       0.55    9.3   3.9       0.12   11.5   0.3    1.7  2  M16C_assoc       Peptidase M16C associated


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.8   1.4e-75   7.9e-73       2     196 .]     101     296 ..     100     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 244.3 bits;  conditional E-value: 1.4e-75
                 EEEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndk 99 
                  v+ll+GlqGaGKTtt++KLa+ l+++ +kkv+lv+aD++R+aA++QL+++a ++g++++ ++++++p+++a++a+++ak +  d++++DTaGrl++d+
  EGE24908.1 101 LVYLLAGLQGAGKTTTAGKLAKFLQDKqNKKVMLVSADIYRPAAIKQLEQVAAQVGASFVPSTTDENPIDIARRAIDEAKLQYQDILIIDTAGRLHIDD 199
                 689*********************9988*********************************************************************** PP

                 HHHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHHHT CS
       SRP54 100 elmeelkkikkvvkpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsrllg 196
                 e+m+e+k++ k+v+p e+l+v+d++tgq+a+++akaF++a+ +tgviltk Dgda+gGaals++a +++Pikf+g Gek+e le f+per+++r+lg
  EGE24908.1 200 EMMSEIKELTKAVNPVETLFVVDSMTGQDAANTAKAFNDALPLTGVILTKTDGDARGGAALSVRAITGKPIKFLGRGEKLEALELFHPERIAQRILG 296
                 ***********************************************************************************************95 PP

>> SRP_SPB  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.41   2.4e+02      46      67 ..     216     237 ..     191     264 .. 0.81
   2 ?   -1.5   0.1       6.8     4e+03      12      43 ..     292     319 ..     282     325 .. 0.59
   3 !  106.4   2.4   1.6e-33     9e-31       1      99 []     328     429 ..     328     429 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.41
                 HHHHHHTTSBHHHHHSGCG-.. CS
     SRP_SPB  46 rieaiidSMTkeErdspekllk 67 
                 ++ +++dSMT +  +++ k ++
  EGE24908.1 216 ETLFVVDSMTGQDAANTAKAFN 237
                 567899******9999988775 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 6.8
                 HHHHCCCCCCHHHHCCC.....H...CCCCCH CS
     SRP_SPB  12 qqikkmGplskllsmiPgmsaeakaeeeaekk 43 
                 q+i  mG++ +l++ +    + +kae    k 
  EGE24908.1 292 QRILGMGDVLSLVEEVEQKIDREKAE----KM 319
                 56777777777777776533333222....22 PP

  == domain 3  score: 106.4 bits;  conditional E-value: 1.6e-33
                 SSCTHHHHHHHHHHHCCCCCCHHHHCCC.........H...CCCCCHHHHHHHHHTTSBHHHHHSGCG-..HHHHHHHHHHTTS-HHHHHHHHHHHHHH CS
     SRP_SPB   1 eftlrdlleqlqqikkmGplskllsmiPgmsae....akaeeeaekklkrieaiidSMTkeErdspekllkesRkrRiArGsGtsvqevnellkqfeqm 95 
                 ef+l+dll+q+qq+k++G++  +l+++Pg++      a +e++ e+k+k++ea+i+SMT+ Er++p+k+   sRkrRiA+GsG+++q+vn+llkq++qm
  EGE24908.1 328 EFDLEDLLTQFQQMKNLGGMAGFLDKMPGLGGAdiqkAMEEARPEEKVKEMEALIHSMTPFERQNPDKIT-PSRKRRIAAGSGRQIQDVNRLLKQHKQM 425
                 6****************************98878865333456689*********************886.9*************************** PP

                 HHHT CS
     SRP_SPB  96 kkmm 99 
                 +kmm
  EGE24908.1 426 AKMM 429
                 ***9 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.1   1.1e-22   6.3e-20       1      75 []       5      82 ..       5      82 .. 0.95
   2 ?   -0.8   0.1       3.2   1.9e+03      46      65 ..     302     321 ..     297     340 .. 0.61

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 1.1e-22
                HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTS...S-HHHHHHHHHHHHH CS
     SRP54_N  1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekk...lkpkqqvkkivkdeL 75
                L+++l++ l+ + g ++++e++++++l+e+++aLleaDV+++v+++++++vk++a+g++    l p+q+++kiv+deL
  EGE24908.1  5 LTERLSGSLRHIAGTGQLTEDNIKDTLREVRMALLEADVALPVARNFVARVKEQALGQEVlkeLAPGQAFVKIVYDEL 82
                799******************************************************55577777************8 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHCTTS.S-HHH CS
     SRP54_N  46 klienvkkkavgekk.lkpkq 65 
                 +l+e+v++ ++ ++k  k ++
  EGE24908.1 302 SLVEEVEQ-KIDREKaEKMAK 321
                 45666644.555444211222 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   5.8e-09   3.4e-06      11     100 ..      95     188 ..      86     210 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 5.8e-09
  Zeta_toxin  11 psqerPklillgGqpGAGKselaellkdele..rqgnvvrldpDdlRel.hPeyeeilka.dpkkaseltqkdaselvekllqeaiengyniiv 100
                  +++ P ++ll+G +GAGK+++a +l++ l+  ++++v  +++D +R+  + + e++ ++   + + + t++    +++++++ea  + ++i++
  EGE24908.1  95 MTGKPPLVYLLAGLQGAGKTTTAGKLAKFLQdkQNKKVMLVSADIYRPAaIKQLEQVAAQvGASFVPSTTDENPIDIARRAIDEAKLQYQDILI 188
                 56789*************************998899999********75266666666664555555666777777888888888777777654 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2   1.2e-08   6.7e-06       9      89 ..     110     255 ..     104     285 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.2e-08
                 TSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH.................................................... CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................... RF
        CbiA   9 GvGKTtlaanLaralar.rglrVllvDaDpqannlaileglendiep.................................................... 54 
                 G+GKTt+a +La+ l++ ++++V lv aD  ++++  +++le+  ++                                                    
  EGE24908.1 110 GAGKTTTAGKLAKFLQDkQNKKVMLVSADIYRPAA--IKQLEQVAAQvgasfvpsttdenpidiarraideaklqyqdiliidtagrlhiddemmseik 206
                 99**************988**************97..58888888889*********************************************999999 PP

                 ..................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS... CS
                 ..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..................dlkrllellealgkkkalllkiagvvlnrvdgene 89 
                                   + +     +++  k ++++l + gv+l++ dg+++
  EGE24908.1 207 eltkavnpvetlfvvdsmTGQD----AANTAKAFNDALPLTGVILTKTDGDAR 255
                 9999999999999875443333....34444445555999*******999865 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.3   4.9e-08   2.9e-05      13     114 ..      95     211 ..      89     238 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4.9e-08
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLaeelgieastiakllkrlk............grarlepgtllivDEag 98 
                 +++++ +v +l G  G+GKtt+ ++l++ ++++ +++v++++      +++++  +++a+  a+++ +++            ++a+l+ +++li+D ag
  EGE24908.1  95 MTGKPPLVYLLAGLQGAGKTTTAGKLAKFLQDKqNKKVMLVSADIYRPAAIKQLEQVAAQVGASFVPSTTdenpidiarraiDEAKLQYQDILIIDTAG 193
                 6677778999*********************99889***9999887777777766777777777776666777799999***889************** PP

      AAA_30  99 mv..dtkqlaallkaaek 114
                  +  d +++ ++ +  ++
  EGE24908.1 194 RLhiDDEMMSEIKELTKA 211
                 985555666665555544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.3e-07   7.6e-05       7     117 ..     102     210 ..      96     224 .. 0.72
   2 ?   -2.3   0.0       8.6     5e+03      55      84 ..     302     340 ..     278     343 .. 0.58

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.3e-07
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav..ielliiDEaqhl 103
                 + ++ G  G+GKTt++ +l++ l+  +   ++++ +v+ ++  +   k+l ++++ ++g +      + e  ++  ++a+++++   + +liiD a +l
  EGE24908.1 102 VYLLAGLQGAGKTTTAGKLAKFLQDKQ---NKKVMLVSADIYRPAAIKQL-EQVAAQVGASFVP-STTDENPIDIARRAIDEAKLqyQDILIIDTAGRL 195
                 67899*****************95332...23444445555555544444.7777777765555.666666667777777777777779********** PP

      AAA_22 104 r.seealeeLrslln 117
                    +e+++e+++l +
  EGE24908.1 196 HiDDEMMSEIKELTK 210
                 555*******99976 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 8.6
      AAA_22  55 dllrellralglelka.........erlsseellealeq 84 
                 +l +e+ +++++e+ +          + ++e+ll++++q
  EGE24908.1 302 SLVEEVEQKIDREKAEkmakkiqkgGEFDLEDLLTQFQQ 340
                 444444455554444444444444444466666666665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   5.3e-07   0.00031       2     151 ..     102     251 ..     101     265 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.3e-07
                 EEEEEESTTCCHHHHHHHHH...CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHH..TT-SEEEEEECT.TT CS
        cobW   2 vtvltGflGsGKTtLlnhll...enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeere..erldviliEttG.la 94 
                 v++l+G  G+GKTt   +l    ++++++k+ ++  +++      + +++ ++ + ++    ++ t  e+ +  +++  ++   +  d+++i t G l 
  EGE24908.1 102 VYLLAGLQGAGKTTTAGKLAkflQDKQNKKVMLVSADIY----RPAAIKQLEQVAAQVGASFVPSTTDENPIDIARRAIDEAklQYQDILIIDTAGrLH 196
                 7899**********965555555****************....4455666666699**********777666655555444447778*********665 PP

                 THHHHHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HH CS
        cobW  95 ePapvafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtD 151
                    +++ + +el+++++   +++vvD+    ++  ++++ ++d l  +  ++l+KtD
  EGE24908.1 197 IDDEMMSEIKELTKAVNPVETLFVVDSMTG-QDAANTAKAFNDALPLTG-VILTKTD 251
                 5666667799*****************665.889999999999999987.5689998 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.2   1.5e-06    0.0009      12      46 ..     110     145 ..     107     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.5e-06
      AAA_31  12 GvGKTTtsvnlaaala.klgkkvLlvDlDpQanatt 46 
                 G GKTTt+ +la++l  k++kkv+lv +D    a++
  EGE24908.1 110 GAGKTTTAGKLAKFLQdKQNKKVMLVSADIYRPAAI 145
                 89**************99***********8766655 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   5.9e-06    0.0034      21     136 ..     102     222 ..      93     234 .. 0.80
   2 ?   -1.0   0.2       1.5   8.8e+02      76     127 ..     320     372 ..     299     433 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.9e-06
                 EEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHTTSX.HHHHHHHHHHHHHHHHSEEEEEEXS.SXCH.HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xx RF
      DnaB_C  21 liiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqRllsseaeidskklrtgklk.eedweklteaieelseaklfiddtp.altv.se 116
                 ++++A+  + Gkt+ a ++a+    k++++v+++s +  +   +++l    a++ ++ + +++ +   d+++ +   ++l+ ++++i dt+ +l++  e
  EGE24908.1 102 VYLLAGLQGAGKTTTAGKLAKFLQDKQNKKVMLVSADIYRPAAIKQLEQVAAQVGASFVPSTTDEnPIDIARRAIDEAKLQYQDILIIDTAgRLHIdDE 200
                 5789********************99*****************************99997654332556666555567899888887777635777347 PP

                 HHHHHHHHHHH.TTE.EEEEEE CS
                 xxxxxxxxxxx.xxx.xxxxxx RF
      DnaB_C 117 irskarrlkke.kgl.gliviD 136
                 + s++++l+k+ + +  l v+D
  EGE24908.1 201 MMSEIKELTKAvNPVeTLFVVD 222
                 9999999988764441455666 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.5
                 HHHHHHT.TSXHHHHHHHHHHHHHHHHSEEEEEEXSSXCHHHHHHHHHHHHHH CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  76 skklrtg.klkeedweklteaieelseaklfiddtpaltvseirskarrlkke 127
                 +kk+++g +++ ed+ +  +++++l  +  f+d+ p+l  ++i++ + + + e
  EGE24908.1 320 AKKIQKGgEFDLEDLLTQFQQMKNLGGMAGFLDKMPGLGGADIQKAMEEARPE 372
                 45555543666667777777778888888888888888777777666555444 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-05     0.011       3      49 ..     101     148 ..      99     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-05
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT.--EEEEEHHHHTTTTTTT- CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekg.isvylLdGdnvRhgLnkdL 49 
                 +v +l+Gl g+GK+t a +l+k L++k+ ++v+l+  d  R    k+L
  EGE24908.1 101 LVYLLAGLQGAGKTTTAGKLAKFLQDKQnKKVMLVSADIYRPAAIKQL 148
                 57789********************99856777777777776666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.6e-05     0.027      22      88 ..      97     192 ..      78     250 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.6e-05
      AAA_16  22 grp.elvllsGesGvGKsslvrellralekd............................ggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 g p  + ll G +G GK++ + +l++ l+++                            g+ f+  ++d+++ +i++ a+ +a  + + +  ++++
  EGE24908.1  97 GKPpLVYLLAGLQGAGKTTTAGKLAKFLQDKqnkkvmlvsadiyrpaaikqleqvaaqvGASFVPSTTDENPIDIARRAIDEAKLQYQDILIIDTA 192
                 44558899*****************99998866666666666666666666665555555555555555554444444433333344444444444 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.2e-05     0.019       8      54 ..     104     151 ..     100     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.2e-05
        ParA   8 vlSgKGGVGKStvavnlAlaLa.kkglkvgllDaDiyGpsiprllgve 54 
                  l+g  G GK+t+a +lA  L+ k+++kv l+ aDiy p   + l+  
  EGE24908.1 104 LLAGLQGAGKTTTAGKLAKFLQdKQNKKVMLVSADIYRPAAIKQLEQV 151
                 5667779**************978899**********99866655544 PP

>> PLU-1  PLU-1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.1   1.2e+03     245     299 ..      35      91 ..       9      97 .. 0.68
   2 ?   12.6   0.1   9.5e-05     0.055     225     330 ..     326     512 ..     294     513 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.1
       PLU-1 245 q....eipvslpslaaleeilkkarewqrkveelikssqdaaerptlseleellkkges 299
                 +    e +v+lp+ +++ + +k +   q+ ++el    q +  +++++el e++ ++++
  EGE24908.1  35 RmallEADVALPVARNFVARVKEQALGQEVLKELAPG-QAF-VKIVYDELTEMMGSANQ 91 
                 3333367788888888887777777777777777554.222.33889999998888855 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 9.5e-05
       PLU-1 225 l.......................................L.eareklsleeLeallneaq.....................eipvslpslaaleeilk 262
                                                         + ear++ +++e+eal+ +++                     +       +++++ +lk
  EGE24908.1 326 GgefdledlltqfqqmknlggmagfldkmpglggadiqkaMeEARPEEKVKEMEALIHSMTpferqnpdkitpsrkrriaagS----GRQIQDVNRLLK 420
                 24444444455555555555555555555554444444444457889999999999999998888888877777766332220....244555555555 PP

       PLU-1 263 karewq................rkveelikssq...............daaerptlseleellkkgeslpvkleeleqLekelkraedWlekgkklFlk 330
                 +++++                 +       + q               ++a+++ + ++++++k++++l +k+e+++ +e+++k++++  +++   F+k
  EGE24908.1 421 QHKQMAkmmkmisrpdgigkmmK-------AVQglargmsgggplfgnKDANQAGTPNMQDMQKSMQDLGLKPEDMPSMEEMQKKMQEMQSQLPPNFKK 512
                 55555555556667744444443.......4445556667999*999877788*********************************9977776666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.7e-05     0.051       3      57 ..     104     162 ..     103     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.7e-05
                 EEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT-.-HHHHH--B--..........- CS
       AAA_5   3 lLvGppGtgKselaerlaaal..nreveyvqltrdt.teedlkgrreik.ngttslvds 57 
                 lL G +G gK++ a +la++l  +++  +++ ++d+ +++ +k+  +++ + ++s+v+s
  EGE24908.1 104 LLAGLQGAGKTTTAGKLAKFLqdKQNKKVMLVSADIyRPAAIKQLEQVAaQVGASFVPS 162
                 899********************999999999998625566666555556666666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   5.4e-05     0.031       2      37 ..     103     144 ..     102     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.4e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg......avllssdtlrrrl 37 
                  ll Gl+G+GK+t a +l+k l+      + l+s d++r + 
  EGE24908.1 103 YLLAGLQGAGKTTTAGKLAKFLQdkqnkkVMLVSADIYRPAA 144
                 6899**************988888888999999999977643 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   5.4e-05     0.031      21     136 ..     102     232 ..      98     249 .. 0.72
   2 ?   -1.7   0.2       2.6   1.5e+03      83     114 ..     311     341 ..     286     386 .. 0.61
   3 ?   -0.9   0.1       1.5   8.6e+02      98     158 ..     365     426 ..     321     442 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.4e-05
      ATPase  21 vvlitGepGtGKtifalqFlikgaekygepgvfvtveepa....edlrenakslGwdlek.leeegklaiidasesaeesaee...........kdked 103
                 v+l++G  G+GKt+ a + +     k ++++++v+ +       ++l + a+++G  +     +e+ + i   + ++++ + +           +  ++
  EGE24908.1 102 VYLLAGLQGAGKTTTAGKLAKFLQDKQNKKVMLVSADIYRpaaiKQLEQVAAQVGASFVPsTTDENPIDIARRAIDEAKLQYQdiliidtagrlHIDDE 200
                 799*************8877666667799********877779999**********9976155666666655444444444447999988655545555 PP

      ATPase 104 leelieelaeaikeikakrvviDsitglayeek 136
                 +++ i+el++a++ ++ +  v+Ds tg +  ++
  EGE24908.1 201 MMSEIKELTKAVNPVE-TLFVVDSMTGQDAANT 232
                 5555555555555443.78899**999844444 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.6
      ATPase  83 laiidasesaeesaeekdkedleelieelaea 114
                 +    a ++a +++++ +++dle l+++++++
  EGE24908.1 311 IDREKAEKMA-KKIQKGGEFDLEDLLTQFQQM 341
                 3333443333.334457777777777777653 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.5
      ATPase  98 ekdkedleelieelaeaikeika.krvviDsitglayeekeavaReilrqlvrvlkklgvTa 158
                 + +++ +ee ++e++  i+++   +r   D+it+  ++  +a   ++++ + r lk+ ++ a
  EGE24908.1 365 AMEEARPEEKVKEMEALIHSMTPfERQNPDKITPSRKRRIAAGSGRQIQDVNRLLKQHKQMA 426
                 35666777777778888877776688888888888555556666677777777777766655 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.3e-05     0.048       3     121 ..     102     210 ..     100     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.3e-05
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrll 101
                 v+l  G  G+GKt  + +l+  l  +++++++v+l+     + +  ++l++ +   + +++f  +++  n+++  ++a+++++ +  d++i+D A rl 
  EGE24908.1 102 VYLLAGLQGAGKTTTAGKLAKFL--QDKQNKKVMLVSADIYRPAAIKQLEQVA--AQVGASFVPSTTDENPIDIARRAIDEAKLQYQDILIIDTAGRLH 196
                 67889999***************..8888888888888888889999998888..99999999999999999977**********************98 PP

     DUF2075 102 tksdqaekqseenqlkelmk 121
                    ++        ++kel k
  EGE24908.1 197 IDDEM------MSEIKELTK 210
                 73222......334444444 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0003      0.17       2      41 ..     100     141 ..     100     192 .. 0.83
   2 ?   -2.1   0.1       3.5     2e+03     222     254 ..     398     429 ..     364     441 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
                 .EE.EEE--TTSSHHHHHHHHHHHHHH.TT--EEEE-THHHH CS
       KTI12   2 pLv.vltGlPssGKstrakeLakalee.ekrsvvviddeslg 41 
                 pLv +l Gl  +GK+t a +Lak l++ ++++v++++ + ++
  EGE24908.1 100 PLVyLLAGLQGAGKTTTAGKLAKFLQDkQNKKVMLVSADIYR 141
                 5664689*******************9678889999888766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.5
                 ...............HHHHHHHHHHHHHHHT.T CS
       KTI12 222 pgsseslelpakkltlaeLsrlrrqFvklnkak 254
                 p+++ ++   +   +++ ++rl +q  ++ k+ 
  EGE24908.1 398 PSRKRRIAAGSG-RQIQDVNRLLKQHKQMAKMM 429
                 444444544444.77888888888888888833 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   0.00014     0.083       2     104 ..     107     216 ..     106     225 .. 0.73
   2 ?    0.2   1.0       1.6   9.3e+02      25      52 ..     296     329 ..     287     419 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00014
                 E-TTSSHHHHHHHHHHHH.....TEEEEEHHHHHH.HHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH..HSSEEEEEE-SEEEETTEEEESS CS
      AAA_17   2 GgPGsGKgtqceklveky.....gfthlsaGdllr.eeakrgglakardemrklpleekkelqkeaaekiaeea..kkkgvlvdghprikeqagfldgl 92 
                 G+ G+GK+t + kl++ +     +  +l   d+ r + +k+ + + a+   + +p   ++   ++a ++i e++   ++ +++d+  r+  ++++++++
  EGE24908.1 107 GLQGAGKTTTAGKLAKFLqdkqnKKVMLVSADIYRpAAIKQLEQVAAQVGASFVPSTTDENPIDIARRAIDEAKlqYQDILIIDTAGRLHIDDEMMSEI 205
                 999************866555544555666888886666666665555555579****************99986566789****99998888888887 PP

                 HHHHHHHH..SE CS
      AAA_17  93 pkevleelkpda 104
                 ++   + ++p  
  EGE24908.1 206 KE-LTKAVNPVE 216
                 75.555666643 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.6
                 EHHHHHH..HHHHTT....TSHSSHHHHCTSHHH CS
      AAA_17  25 saGdllr..eeakrg....glakardemrklple 52 
                  +Gd+l   ee++++    +++k  ++++k+ + 
  EGE24908.1 296 GMGDVLSlvEEVEQKidreKAEKMAKKIQKGGEF 329
                 5666665445544442111222222222222222 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00061      0.35      26      60 ..     102     135 ..      72     164 .. 0.80
   2 ?   -0.5   0.0       1.8   1.1e+03     127     158 ..     178     210 ..     158     225 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00061
                 EEEEEESTTSTHHHHHHHHHHHH-S.....-EEEE CS
      ResIII  26 rglikmaTGtGKTlvaaklierllkkgkeekflfl 60 
                  +l++   G+GKT +a kl++ l+ k++ +k++++
  EGE24908.1 102 VYLLAGLQGAGKTTTAGKLAKFLQDKQN-KKVMLV 135
                 57888899***************99966.455555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.8
                 HHHTTT-SEEEEETGGGTTS..TTTHHHHHT-- CS
      ResIII 127 ellrdrfdviiiDEaHrlgak.kswreilekfk 158
                 e++ +++d++iiD a rl+ + + + ei+e  k
  EGE24908.1 178 EAKLQYQDILIIDTAGRLHIDdEMMSEIKELTK 210
                 566677778888888888876335555655444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00084      0.48      12      63 ..     101     157 ..      91     217 .. 0.68
   2 ?   -0.6   0.1         3   1.8e+03      80      90 ..     420     430 ..     304     507 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00084
                 SEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGG....B-HHHCCHCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx....xxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllkp.teGeilldgkdlke....qeleslrkeigv 63 
                  ++ + G  GaGK+t +  la+ l++ ++ ++ l ++d+ +    ++le++ +++g 
  EGE24908.1 101 LVYLLAGLQGAGKTTTAGKLAKFLQDkQNKKVMLVSADIYRpaaiKQLEQVAAQVGA 157
                 578899***************998885778888889998886555555555555543 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 3
                 HHHTCHHHHHH CS
                 xxxxxxxxxxx RF
    ABC_tran  80 esdeeiekals 90 
                 ++ ++++k+++
  EGE24908.1 420 KQHKQMAKMMK 430
                 22222333332 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   0.00048      0.28       4      87 ..     105     227 ..     102     249 .. 0.50
   2 ?   -0.6   0.0       2.4   1.4e+03      53      86 ..     354     388 ..     336     432 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00048
                 EEESTTSSHHHHHHHHHT...........................S.TEEE.SSSTTSSSSEEEEEEE........ETTEEEEEEECGGCSSHHHHHHH CS
    MMR_HSR1   4 ivGrpNvGKStLinaltg...........................e.kaiv.sdkpgtTrdinegrvk........lkgkeielvDtpGliegaseekg 65 
                 ++G   +GK+t   +l +                           + +a+v +++   T+d n + ++        l+ ++i ++Dt+G ++ ++e  +
  EGE24908.1 105 LAGLQGAGKTTTAGKLAKflqdkqnkkvmlvsadiyrpaaikqleQvAAQVgASFVPSTTDENPIDIArraideakLQYQDILIIDTAGRLHIDDEMMS 203
                 566677777777777764443333333444444444444443332223344333333444444444443444444444578********7663333334 PP

                 HHHHHHHHHCTSEEEEEEETT..T CS
    MMR_HSR1  66 lgkaflaleeadlillvvdas..e 87 
                 + k++ +  +    l+vvd+   +
  EGE24908.1 204 EIKELTKAVNPVETLFVVDSMtgQ 227
                 444444445556689999955331 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.4
                 CGGCSSHHHHHH..HHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  53 tpGliegaseek..glgkaflaleeadlillvvdas 86 
                 +pG + ga+ +k  ++++  ++++e++++++ +   
  EGE24908.1 354 MPG-LGGADIQKamEEARPEEKVKEMEALIHSMTPF 388
                 677.66666666334444445566788888877533 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       5.6   3.3e+03      13      44 ..       4      43 ..       3      67 .. 0.67
   2 ?   11.5   0.3   0.00057      0.33       2      22 ..     104     124 ..     104     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 5.6
      AAA_18 13 tlakeLskrl.gf.......gvnlrdvakenglllevdpe 44
                tl+++Ls +l ++        +n++d+++e ++ l + + 
  EGE24908.1  4 TLTERLSGSLrHIagtgqltEDNIKDTLREVRMALLEADV 43
                6777777776555777777788888888887777766665 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00057
      AAA_18   2 lltGtpGvGKttlakeLskrl 22 
                 ll+G +G+GKtt a  L+k l
  EGE24908.1 104 LLAGLQGAGKTTTAGKLAKFL 124
                 699**************8854 PP

>> LIN52  Retinal tissue protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.32   1.9e+02      42      72 ..     179     210 ..     142     215 .. 0.79
   2 ?    4.0   0.0      0.14        83       5      73 ..     280     344 ..     278     351 .. 0.75
   3 ?    3.5   0.3       0.2   1.1e+02      14      41 ..     484     511 ..     473     514 .] 0.81

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.32
       LIN52  42 eelekddiellnelgsltt.eqLlekvkelqd 72 
                 ++l+ +di ++ + g+l   +++++++kel +
  EGE24908.1 179 AKLQYQDILIIDTAGRLHIdDEMMSEIKELTK 210
                 779999*********99862689******976 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.14
       LIN52   5 ekLdrsSPelwPeqvpgvsdflkktlssekasepewkeelekddiellnelgsltteqLlekvkelqdl 73 
                 e L+   Pe   +++ g+ d+l+      ++ e+++++e  ++  +++++ g++  e+Ll + +++++l
  EGE24908.1 280 EALELFHPERIAQRILGMGDVLSL----VEEVEQKIDREKAEKMAKKIQKGGEFDLEDLLTQFQQMKNL 344
                 556666788888999999999943....34445556666666677889999999999999999999885 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.2
       LIN52  14 lwPeqvpgvsdflkktlssekasepewk 41 
                 l Pe +p+++++ kk ++ +++ +p++k
  EGE24908.1 484 LKPEDMPSMEEMQKKMQEMQSQLPPNFK 511
                 569*********9987777777777776 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0061       3.5       3      27 ..     104     128 ..     102     139 .. 0.88
   2 ?    3.1   0.1      0.13        77      83     119 ..     170     206 ..     146     239 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0061
                 EEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellkssg 27 
                 ++ G +G GKtT   k+++ l++++
  EGE24908.1 104 LLAGLQGAGKTTTAGKLAKFLQDKQ 128
                 689******************9875 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.13
                 HHHHHHHHHHH.HHH-EEEE---STTGGG-HHHHHHHH CS
    NTPase_1  83 elalealrkal.seadviviDEiGkmElkskkfkeave 119
                 ++a +a+++a  + +d+++iD  G++    + + ++++
  EGE24908.1 170 DIARRAIDEAKlQYQDILIIDTAGRLHIDDEMM-SEIK 206
                 5778899998889999********997765443.3344 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1    0.0003      0.17       3      29 ..     107     134 ..      77     137 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
                      ESTTSSHHHHHHHHHHHHHHTTE..EEE CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegik.vvl 29 
                      Gl GaGKtt a +l++ l+++  k v+l
       EGE24908.1 107 GLQGAGKTTTAGKLAKFLQDKQNKkVML 134
                      99*****************999886665 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0023       1.4       5      38 ..     104     138 ..     101     144 .. 0.86
   2 ?   -2.9   0.0       5.3     3e+03     132     133 ..     191     192 ..     172     235 .. 0.55
   3 ?    1.0   0.1      0.33   1.9e+02     148     199 ..     331     383 ..     328     391 .. 0.76
   4 ?    4.0   0.3      0.04        23     140     231 ..     417     503 ..     412     506 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0023
                  EEEESTTSSHHHHHHHHHHHHH.HTTS-EEEEE-S CS
  ArsA_ATPase   5 lvgGKGGVGKttvsaatavkls.ekgkkvllistD 38 
                  l++G  G GKtt +  +a  l  +++kkv+l+s D
   EGE24908.1 104 LLAGLQGAGKTTTAGKLAKFLQdKQNKKVMLVSAD 138
                  678889************9987257899*****99 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.3
                  SB CS
  ArsA_ATPase 132 ta 133
                  ta
   EGE24908.1 191 TA 192
                  43 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.33
                  HHHHHHHHHHHHHHHHHHHHHHCCCSHCHHHHHHHHHHHH..HHHHHHHHHHHH CS
  ArsA_ATPase 148 leklleklvklkeklsplakqlvkllglggvsieealeel..eetkeeikkvee 199
                  le ll+++ ++k+ l+ +a  l k+ glgg +i++a+ee   ee+++e++++ +
   EGE24908.1 331 LEDLLTQFQQMKN-LGGMAGFLDKMPGLGGADIQKAMEEArpEEKVKEMEALIH 383
                  5678888888887.9999*9**************99987511556666665554 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.04
                  GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHH.HHHHHHHHHHHHH CS
  ArsA_ATPase 140 rllslpevleklleklvklkeklsplakqlvkllglggvsieealeeleetkeeikkveeiltdpertsfrlVvipEkl.slkEteRaikeLk 231
                  rll+  +++ k+++ +++  + +++++k++++l + ++   +     l  +k+  ++ +  ++d +++   l ++pE + s++E ++ ++e++
   EGE24908.1 417 RLLKQHKQMAKMMK-MISRPDGIGKMMKAVQGLARGMSGGGP-----LFGNKDANQAGTPNMQDMQKSMQDLGLKPEDMpSMEEMQKKMQEMQ 503
                  67777777777777.444444577777777776444443333.....2233333344445566666666667778888866888888888876 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00042      0.24       4     102 ..     107     195 ..     104     237 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00042
  Helicase_RecD   4 AdRGRGKSaalGlalaaliaegksnilvtaps...kenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyiapdellklkeqadllvv 96 
                    +  G GK++++G++++ l  ++++++++++ +   ++++k+l + +     ++g +  +++++++          i   a de++ +   +d+l++
     EGE24908.1 107 GLQGAGKTTTAGKLAKFLQDKQNKKVMLVSADiyrPAAIKQLEQVA----AQVGASFVPSTTDEN-------PIDIARRAIDEAKLQY--QDILII 189
                    5679*****************9999999987611144444444444....444444333333333.......4444444555555544..366666 PP

  Helicase_RecD  97 DEAAai 102
                    D A  +
     EGE24908.1 190 DTAGRL 195
                    666544 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   0.00028      0.16       2      74 ..     104     199 ..     103     241 .. 0.59
   2 ?   -0.2   0.2       2.1   1.2e+03      39      99 ..     324     391 ..     300     432 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00028
                 EEESSTTSSHHHHHHHHHHHH....THE...............EEEEETTTCSSS...............STTHHHHHHHH.HHHHHHHTSTSEEEEEE CS
         AAA   2 llyGppGtGKTllakavakel....gve...............fleisgsellsk...............yvgesekkire.lfkeakekakpsilfiD 65 
                 ll G  G GKT++a  +ak l    + +                          +               +  e++ +i+   ++eak +  + il+iD
  EGE24908.1 104 LLAGLQGAGKTTTAGKLAKFLqdkqN-KkvmlvsadiyrpaaiK----------QleqvaaqvgasfvpsTTDENPIDIARrAIDEAKLQ-YQDILIID 190
                 89******************944331.13333333333333330..........033344445555432255555555433033334433.36999999 PP

                 TGGGHHHHH CS
         AAA  66 Eidalaksr 74 
                  + +l+ ++
  EGE24908.1 191 TAGRLHIDD 199
                 888887666 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.1
                 TTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHH.....TTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA  39 vgesekkirelfkeakeka..kpsilfiDEidalaksr.....sgseseeeervvnqLlteldgvkkk 99 
                 ++ +e ++++l+++ ++++  +    f+D +  l++++     +++  ee+ + +++L++ +  ++++
  EGE24908.1 324 QKGGEFDLEDLLTQFQQMKnlGGMAGFLDKMPGLGGADiqkamEEARPEEKVKEMEALIHSMTPFERQ 391
                 55555555555555555544433444566666665555555544555555566666666666666665 PP

>> M16C_assoc  Peptidase M16C associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3    0.0002      0.12       5      88 ..     305     384 ..     302     387 .. 0.87
   2 ?   -3.3   0.3       6.8     4e+03      26      47 ..     484     505 ..     466     506 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
  M16C_assoc   5 eeleeekekeekerLaakkaslseeekekiveetkeLkerQekpdsedlscLPtLkleDIpreiteleeekeveidgvkvllhe 88 
                 ee+e++ + e +e++a+k+++  e ++e++  + +++k+    +    l+++P L  +DI++ + e ++e+  ++++++ l+h 
  EGE24908.1 305 EEVEQKIDREKAEKMAKKIQKGGEFDLEDLLTQFQQMKNLGGMA--GFLDKMPGLGGADIQKAMEEARPEE--KVKEMEALIHS 384
                 6789999*************************************..******************5555444..35777777665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.8
  M16C_assoc  26 lseeekekiveetkeLkerQek 47 
                 l++e+   + e +k+++e Q++
  EGE24908.1 484 LKPEDMPSMEEMQKKMQEMQSQ 505
                 3377777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1454  (0.0810977); expected 358.6 (0.02)
Passed bias filter:                      948  (0.0528752); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.39
# Mc/sec: 3959.95
//
Query:       EGE24909.1  [L=245]
Description: cytochrome C assembly protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-21   75.7  18.2    5.6e-21   75.3  18.2    1.2  1  Cytochrom_C_asm  Cytochrome C assembly protein
  ------ inclusion threshold ------
       0.91    9.9  11.5          6    7.3   4.3    2.6  2  DUF2628          Protein of unknown function (DUF2628)
        6.3    6.9   9.6       0.29   11.3   3.2    2.1  3  MpPF26           M penetrans paralogue family 26


Domain annotation for each model (and alignments):
>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3  18.2   9.4e-25   5.6e-21       7     213 ..      22     243 ..      16     244 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 9.4e-25
  Cytochrom_C_asm   7 sllllawilsllgllleylarklnlsllaavaliaalillgfalf....................lllaelqesadlnpalqspilmiHvplal 80 
                      ++ll  w+l+   + l     +ln++l+++++l+++ ++l+++lf                    ++l  + + a       s+ l iH+ l++
       EGE24909.1  22 AILLHGWVLTPEIITL----YGLNFNLFNTLSLTSLFFVLFYVLFglyrpilslgilavpmaaagVSLGYFGQVAYKPLTDLSNTLQIHILLSF 111
                      4455555555555555....68999***************************************99999999999999999************* PP

  Cytochrom_C_asm  81 lsYatliigallsialliierqlkkkkkl.klsanlkllkqldrlsyriiliGfvlltigiilGsvWaeeaWGsywsWDpketaslitWlvfaa 173
                      ++Y +l+++a+  ++l ++ r+lk+k ++  + ++l++l+++++l++ ++l+Gfv+l i++ +G v   + + ++    +k ++sl++Wl+++ 
       EGE24909.1 112 AAYCVLLMAAVQGVLLRLQIRELKRKTIHrFWVSRLPSLQSMESLLFDMVLTGFVILSIALGFGLVATYDILDQHLA--HKMVFSLLSWLLYGL 203
                      **************99998888877666516899*******************************************..*************** PP

  Cytochrom_C_asm 174 llhsriek.gwrgkkaailailgflllllayfgvrllgegl 213
                      l++++ ++ gwrgk+aa +a+ gflll +++ g++ + e+l
       EGE24909.1 204 LIAGH-YRyGWRGKRAANFAVYGFLLLAIGFVGSKAVMEFL 243
                      *****.555*************************9988876 PP

>> DUF2628  Protein of unknown function (DUF2628)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.3     0.001         6      22      84 ..      46     113 ..      39     141 .. 0.83
   2 ?    6.6   0.4    0.0017        10      47      91 ..     166     212 ..     159     215 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.001
     DUF2628  22 lsfnvwAfffgfiwLlyrklwlkalvllviavavsvvlavl......gfsdavrlllalliaillglea 84 
                 ++++   +ff  ++ l+ +l+++ l+l ++av ++++ + l       +++ + l  +l i ill+++a
  EGE24909.1  46 NTLSLTSLFFVLFYVLF-GLYRPILSLGILAVPMAAAGVSLgyfgqvAYKPLTDLSNTLQIHILLSFAA 113
                 56677889999999887.9*******************9998888886666677778888888888776 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0017
     DUF2628  47 vllviavavsvvlavl..gfsdavrlllalliaillgleanslyylk 91 
                 v l ia+ +++v ++   +   a +++++ll ++l+gl  ++ y++ 
  EGE24909.1 166 VILSIALGFGLVATYDilDQHLAHKMVFSLLSWLLYGLLIAGHYRYG 212
                 333444444444433255777778889************99999985 PP

>> MpPF26  M penetrans paralogue family 26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2      0.93   5.5e+03     110     114 ..      18      22 ..       6      35 .. 0.53
   2 ?   11.3   3.2   4.8e-05      0.29       2      95 ..      42     140 ..      41     172 .. 0.85
   3 ?   -1.6   0.1      0.44   2.6e+03      26      30 ..     166     170 ..     148     206 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.93
      MpPF26 110 ifilp 114
                 i+i++
  EGE24909.1  18 ILIFA 22 
                 22211 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.8e-05
      MpPF26   2 lkllkkikklsltiiilyllatv....lll.vsllayivllskskllskeyeeesslleaelligvllillidifyivnfileiiLiiKvselkkkhpe 95 
                  +l+  ++ +sl  +++y+l+ +    l+l +  + ++++ + + ++ + +++  + l   l i +ll  ++  ++++ ++ +++L + ++elk k ++
  EGE24909.1  42 FNLFNTLSLTSLFFVLFYVLFGLyrpiLSLgILAVPMAAAGVSLGYFGQVAYKPLTDLSNTLQIHILLSFAAYCVLLMAAVQGVLLRLQIRELKRKTIH 140
                 6899999**************999886444144467888888999999999999988888899988887777667*******************99875 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.44
      MpPF26  26 llvsl 30 
                 +++s+
  EGE24909.1 166 VILSI 170
                 22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2087.28
//
Query:       EGE24910.1  [L=101]
Description: hypothetical protein EA1_06496 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-22   78.7   0.0    4.2e-22   78.5   0.0    1.0  1  DUF493    Protein of unknown function (DUF493)


Domain annotation for each model (and alignments):
>> DUF493  Protein of unknown function (DUF493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   2.4e-26   4.2e-22       2      82 ..      17      99 ..      16     101 .] 0.96

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 2.4e-26
      DUF493  2 elieFPcdfpikviGk..aeedfaqavvevverhapdfdeetvevresskgkYlSvtvtvrveseeqldalyqeLkahprvkm 82
                el++FP+d+p+ +iG+  ++e++ ++v+ ++++ +p+fd++t++vr+s++g+++Sv+v+++ ++++q+++ly++L++  +v+ 
  EGE24910.1 17 ELWNFPMDYPMSIIGHegHHETLINEVKLILAEIFPEFDAATMQVRPSRTGRFHSVRVNLYLTDADQVNRLYTALDKAATVRT 99
                699*************6669***********************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 797.12
//
Query:       EGE24911.1  [L=477]
Description: nuclease SbcCD subunit D [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-14   55.6   1.9    1.8e-14   54.7   1.9    1.5  1  Metallophos  Calcineurin-like phosphoesterase
      9e-12   45.1   0.0    1.7e-11   44.3   0.0    1.5  1  SbcD_C       Type 5 capsule protein repressor C-terminal doma
  ------ inclusion threshold ------
       0.23   11.5   2.1       0.22   11.6   0.3    1.9  2  B            B domain


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   1.9   3.1e-18   1.8e-14       1     203 [.      42     281 ..      42     282 .. 0.73

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 3.1e-18
                  EEEEEEESBTB...TTCCTHHHHHHHHHHHHHHH...TTESEEEEESTSSSSSHHHHHHHHHHHHHHHH....TSEE.EEEC-TTS............ CS
  Metallophos   1 lrilvigDlHl...algggqlddllkllddllre...ekpdlvllaGDlvdrgdlekellellaalvky....pipv.ylllGNHe............ 75 
                  lr+l+++D+Hl    +   ++d+++k+ld+l++    +++d++++aGD++d+  ++++ ++l+ +++++    +i++ ++++GNH+            
   EGE24911.1  42 LRLLHTSDWHLgklLYNQSRYDEFAKFLDWLIEAlilHQVDILIIAGDIFDTMTPSNRAEYLYHHFLASafknHIQHiIIVAGNHDsptslqktkevl 139
                  689***********667777777777777774445559***************9999888888777777776644446********999998888888 PP

                  ................CHHHHHHHHHHHHHHH.....HHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHH CS
  Metallophos  76 ................gfeeellnkygylgif.....sepwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepgdewlk 152
                                      el  + ++ gi      + p+ +d +v +++  +s++ +  + lll G      +  ++l++l +++ ++   ++  +
   EGE24911.1 140 gvlnthvigsvsqdksD---ELIVLTDDVGIPsaivmAVPYIRDRDVRSGIDANSIHQK--NQLLLEGV----AEYYHSLTNLAKDKQQAV--YHTHQ 226
                  88888877777753331...555555555555666667777777888888888888887..66666666....233344555555555444..55555 PP

                  HHHHHTTCSEEEEEESSESSCSSSCSCCHHHHH..........HHHHHTT......ESEEEEESSSS CS
  Metallophos 153 dlekrekadwvivlgHsplyrgsgylfgdeale..........dllkkyg......vdlvisGHtHv 203
                        k+ ++i+ gH     g+  +  d+ ++                       +d+v  GH+H 
   EGE24911.1 227 ------KTIPIIATGHLYAA-GAAVSSTDDGMRdiqigtlgqiS-----SqifddaIDYVALGHIHA 281
                  ......5999**********.************88888666541.....1333356**********5 PP

>> SbcD_C  Type 5 capsule protein repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   2.8e-15   1.7e-11       2      95 .]     353     449 ..     352     449 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.8e-15
      SbcD_C   2 frpLrrlkgdleeila....leepsekpawlevevtdedplpdlrerlrellegipvevlrlrrtrekasaeleqeaeetlaelspeevFerflaeet 95 
                 f+ L+++ gd + i+     l +++++p wle+e+ +++ + +l++ + +lleg ++  ++++++   +++ + +    +l++l+++++F ++l++e+
  EGE24911.1 353 FHSLAKICGDMAFITNaidtL-KTHDEPIWLEIEYVGDTLVANLKQHISNLLEGSNIAAISIKNKAIHQGSLKLHTPTLNLETLDEMDIFYQRLDKEN 449
                 899***************653.78**************************************999988899999********************9985 PP

>> B  B domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.1   6.4e+03       4      13 ..     213     222 ..     211     224 .. 0.78
   2 ?   11.6   0.3   3.6e-05      0.22      11      31 ..     440     460 ..     434     465 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHH CS
           B   4 fnkdQQnAFY 13 
                   kd Q+A Y
  EGE24911.1 213 LAKDKQQAVY 222
                 5789999999 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 3.6e-05
                 HHHHHCC-TTS-HHHHHHHHH CS
           B  11 AFYevLklpnlteeqrNgyIq 31 
                  FY+ L  +nl+++++N+ I 
  EGE24911.1 440 IFYQRLDKENLNQDEKNDLIG 460
                 5****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3367.62
//
Query:       EGE24912.1  [L=1296]
Description: nuclease SbcCD subunit C [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-27   96.9  11.1    2.2e-27   96.9  11.1    7.8  4  AAA_23          AAA domain
    3.1e-12   46.5   0.2    8.6e-12   45.1   0.2    1.7  1  SbcCD_C         Putative exonuclease SbcCD, C subunit
    2.3e-06   27.2   0.0      6e-06   25.9   0.0    1.7  1  AAA_29          P-loop containing region of AAA domain
    0.00017   21.1  17.8      0.025   14.0   0.0    3.3  3  SMC_N           RecF/RecN/SMC N terminal domain
     0.0054   16.5   2.8      0.064   13.0   0.1    3.4  3  AAA_30          AAA domain
     0.0095   16.0   2.8     0.0095   16.0   2.8    8.8  8  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
  ------ inclusion threshold ------
       0.11   12.9   1.2        0.9   10.0   0.0    3.2  3  AAA             ATPase family associated with various cellula
          1    9.6   0.0          1    9.6   0.0    4.2  4  AAA_22          AAA domain
        2.6    8.2   5.0          3    8.0   0.4    3.3  3  DUF3885         Domain of unknown function (DUF3885)
        6.4    7.2   6.7        4.8    7.6   4.0    2.4  2  zf-Di19         Drought induced 19 protein (Di19), zinc-bindi


Domain annotation for each model (and alignments):
>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9  11.1   1.2e-30   2.2e-27       1     198 [.       5     269 ..       5     285 .. 0.81
   2 ?  -45.3  63.9        10   1.8e+04      75     192 ..     341     551 ..     274     827 .. 0.69
   3 ?    3.8   7.3      0.04        72     114     198 ..     861     966 ..     833     968 .. 0.52
   4 ?   -0.0  12.0      0.59   1.1e+03      98     197 ..    1031    1120 ..     969    1131 .. 0.41

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 1.2e-30
      AAA_23   1 kLkienfrsf.rdqeidF......skgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgrytrsier 92 
                 kL+ en++s+ ++++idF      ++ l++ItGp+GaGKTTildAi+laLygetprls +    + +++    s g+  a  ++ f+ +d++  +++++
  EGE24912.1   5 KLSFENINSLkGKWQIDFedaafyHHALFAITGPTGAGKTTILDAICLALYGETPRLSIS----ATQNELM--SIGTAFAASSVIFRANDKI--YQVSW 95 
                 799*******667**********999******************************9875....4455555..3334444578999999996..79999 PP

      AAA_23  93 erelskkkgkttkkaklellei................deleqfisellgskkiilnlilflgqerfeefelkdkke...................... 153
                 ++ ++k+k++   +a  ++++                 +  +++++++lg +k +++++++l q++f+ f+++d  e                      
  EGE24912.1  96 SQRRAKQKTDGNLQAVSREISLlqhaddthgkileekaSLVNKEVERILGMNKVQFTRSVMLVQGEFAAFLQSDATErgqileqitgthiyakigqaaf 194
                 999999999999777555554444455333433322444445666669999999************999999888888999999999999999999999 PP

      AAA_23 154 ..........................rleelekeleeledekkllekl....eqekekekeleeleeeleeilke 198
                                           + + l+k++ e++++k+lle++     ++++  +e+++l++e+  ++ +
  EGE24912.1 195 ekhkeqlnllknlqiklgevnllnteEYDGLIKKISEITQQKNLLETQiklmSDRQKIANEYQTLNQEMAHYQAK 269
                 999999******************************************555545555555777777777766655 PP

  == domain 2  score: -45.3 bits;  conditional E-value: 10
      AAA_23  75 veltfenkdgry........................................trsiererelskkkgkttkkaklellei...deleqfise..llgsk 128
                 ++ +f++++++y                                        t+++  e + ++++ ++  +++ ++++    ++l+++++   +  s+
  EGE24912.1 341 IKEKFNKITNDYenlkptlqavrrldqhiaslrkehqsmiqtlektkqdytsTQNLLKETQSNQSNLVQDIDTIQQKIKGidsENLKKNLKLcdNHISQ 439
                 444455555555666555555555555555555553333333222222222222222222222222222222222222221111111111112111122 PP

      AAA_23 129 kiil.nlilflgqer........feefelkdkke.......................................rleelekeleeledekkllekleqek 179
                 ++ l + i   +q++        ++  elkdk e                                         +++e+++e+++++   l +le+++
  EGE24912.1 440 YDTLiQAITHAHQQQlwrinvfsNHLHELKDKREhfksvnlnlqsidnqigtinikiidnlnltkkddinvdiLQKNIEDQYEKIKQQSHHLYTLERIL 538
                 223323333333333444444332222223333355555555555555555555555555555555555444322223333333333333333334444 PP

      AAA_23 180 ekekeleeleeel 192
                 +  +++  +++++
  EGE24912.1 539 KDYEQYARIQSDI 551
                 4444444444444 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.04
      AAA_23 114 i..deleqfisellgskki.....ilnlilflgqerfeefelkdkkerleelekeleeledekkllekl.........................eqeke 180
                    ++++q+++++ ++  +     i+++  +++ + + +  + +k ++l  ++ ele+                                    + e++
  EGE24912.1 861 YvlSQTKQMLENQANQATAlnedyINKQTKLIHLDAQINAHT-KKIQELTPVIAELEH----------TmankvleiktqtneritllgdknpdHTENN 948
                 334444455554333322222222233333333333322222.233333333333333..........2333333323335555666677788899999 PP

      AAA_23 181 kekeleeleeeleeilke 198
                 ++++l++++++le+++k+
  EGE24912.1 949 YQDKLTQIRQQLENATKN 966
                 *************99886 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.59
      AAA_23   98 kkkgkttkka.klelleideleqfisellgskki..ilnlilflgqerfeefelkdkkerleelekeleeledekkllekleqekekekeleeleee 191 
                  k+  +t  ++     ++i++ ++++++l++s+ +  +++l +++ +  +  ++l++ ++ + el+  +             + e++++++ +++ ++
  EGE24912.1 1031 KTAHDTLINQlSQTTISINNCQEKLDNLIKSNPNvhQFKLEDLHTELINLQQQLESVNQSIGELNAIK-------------NSELQNRQRHTQILKD 1114
                  22222222220122233344444444444443333344444444444433333333333222222222.............2333334444444444 PP

      AAA_23  192 leeilk 197 
                  ++ +++
  EGE24912.1 1115 IQRQEQ 1120
                  444433 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.2   4.8e-15   8.6e-12      13      88 ..    1180    1248 ..    1169    1250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 4.8e-15
     SbcCD_C   13 evevrdedgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88  
                  e+ v+  d  +++  rss++lSGGe+ f+++lala++l++  s+    + +++++fLDE+F++lDe+ ++ +l++l
  EGE24912.1 1180 EILVT--DLHQGDAVRSSKNLSGGES-FIISLALALGLSQINSQ----NIQIESLFLDEGFGTLDETALDLALNTL 1248
                  44444..55667779***********.*************9999....89*******************9999876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.4e-09     6e-06      23      50 ..      31      58 ..      18      68 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.4e-09
      AAA_29 23 gatlltGpsGsGKSTllDAiqalLvpak 50
                  + +tGp+G+GK+T+lDAi   L++++
  EGE24912.1 31 ALFAITGPTGAGKTTILDAICLALYGET 58
                4689*********************998 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.4e-05     0.025      22      49 ..      28      55 ..       2     153 .. 0.75
   2 ?   -2.0   0.0       1.1     2e+03      39      87 ..     202     251 ..     200     297 .. 0.65
   3 !    9.1  11.9   0.00046      0.82     135     216 ..     520    1282 ..     318    1286 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
                TTSSEEEEEESTTSSHHHHHHHHHHHCT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 22 fsksftaivGpNGSGKsnlldAilFvLG 49
                +++ + ai+Gp G+GK+ +ldAi+  L 
  EGE24912.1 28 YHHALFAITGPTGAGKTTILDAICLALY 55
                4667789****************87774 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
                 HHHHHHHHHCTT.TTTTTTCHCCCCCC--...BTTCSSTTEEEEEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  39 nlldAilFvLGersakklrseklsdlihk...skekasvkkaeveitfdned 87 
                 nll  ++  LGe +   l  e+++ li+k     +++++ + +++++ d ++
  EGE24912.1 202 NLLKNLQIKLGEVN--LLNTEEYDGLIKKiseITQQKNLLETQIKLMSDRQK 251
                 66666777788544..488999999999886666777777888887643322 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00046
                  T................................................................................................ CS
                  x................................................................................................ RF
       SMC_N  135 e................................................................................................ 135 
                  +                                                                                                
  EGE24912.1  520 Qyekikqqshhlytlerilkdyeqyariqsdisdtnrkiinlqeekikiqdiletvsqnihqasqthkailenyelhkqilymkmhfdqlqdgspcp 616 
                  0444444444444444444444444445555555555555555555555566666666666666666666666666666666666666666666666 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  EGE24912.1  617 lcgstehpfklqphhlddehakqakeklvfcenqlnelnhtatqhtttlhklqmalddhqehlntaqntsnslyhdlnalwqtiasecslehantlp 713 
                  6666666666666666666666666666666666666666666666666666666666666666666666666666666666666667777777777 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  EGE24912.1  714 srntigkfiknsqdkiknleesyqlsnrllhelnqliaqkdrqmiekenlkinglklrddalvlmreiydgkvhfcdqllsafyqliqaqntislpn 810 
                  7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  EGE24912.1  811 elnaikqhlskittwydnithhtqgdvlpeaeafnpspltlkeeefgkvqyvlsqtkqmlenqanqatalnedyinkqtklihldaqinahtkkiqe 907 
                  7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  EGE24912.1  908 ltpviaelehtmankvleiktqtneritllgdknpdhtennyqdkltqirqqlenatknvhddiadlhaqkatieslnltikelanklsqskvsfeq 1004
                  7777777777777777777788888888888888888888888888888888888888888888888888888888888888888888888888889 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  EGE24912.1 1005 almasafdtqaeflaaliledelielktahdtlinqlsqttisinncqekldnliksnpnvhqfkledlhtelinlqqqlesvnqsigelnaiknse 1101
                  9999999999999999999999*************************************************************************** PP

                  ...............................................................................................CS CS
                  ...............................................................................................xx RF
       SMC_N  136 ...............................................................................................lL 137 
                                                                                                                 +L
  EGE24912.1 1102 lqnrqrhtqilkdiqrqeqenaiwakldmligsadgkkyrnfvqgltldlvlhhanqilakmndrylltfdadssrtleilvtdlhqgdavrsskNL 1198
                  ************************************************************************************************* PP

                  -HHHHHHHHHHHHHHHHCCS--SE....EEECTTTTTS-HHHHHHHHHHHHHHCTTSEEE.EE-SSHHHCCC-SCEEEEEEEET CS
                  xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  138 SgGektLvalaLlfAiqkvkpapl....yllDeidaaLDeknvkkvaellkeksknaQfi.vislreemlekadklvgvtkven 216 
                  SgGe  +++laL + + +++ + +     +lDe    LDe+      + l e +++   i +is+ + + e+ d+ + v k+  
  EGE24912.1 1199 SGGESFIISLALALGLSQINSQNIqiesLFLDEGFGTLDETALDLALNTLFELQQSGKSIgIISHVASLKERIDTQIIVEKHAG 1282
                  ***************8888777763333459*************9999999888875555499999999999999988887655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   3.6e-05     0.064      17      52 ..      29      64 ..      17     218 .. 0.75
   2 ?   -2.2   0.0       1.6   2.9e+03     102     125 ..     917     940 ..     911     941 .. 0.86
   3 ?    1.4   0.3      0.12   2.2e+02     126     172 ..    1082    1133 ..    1077    1145 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrvigl 52
                ++ + ++tGp G+GKtt+l a+  a+  +  r+ + 
  EGE24912.1 29 HHALFAITGPTGAGKTTILDAICLALYGETPRLSIS 64
                456899***************966655554444444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
      AAA_30 102 tkqlaallkaaekagakvilvGDe 125
                  ++++++l++ ++++ ++ l+GD+
  EGE24912.1 917 HTMANKVLEIKTQTNERITLLGDK 940
                 567899999999***********8 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.12
      AAA_30  126 rQlasVea..Ggvlrdlvea....agigtaeLtevvRqkeseeraaalalreg 172 
                  +Ql+sV++  G++ + + ++    ++ +t  L++++Rq++++   a l++  g
  EGE24912.1 1082 QQLESVNQsiGEL-NAIKNSelqnRQRHTQILKDIQRQEQENAIWAKLDMLIG 1133
                  7888888754433.33322233336779999*******987777666666555 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   6.8     0.023        41      52     126 ..     220     293 ..     196     305 .. 0.89
   2 !    6.7   8.8    0.0039       7.1      33     118 ..     317     405 ..     311     413 .. 0.83
   3 ?   -0.0   6.4      0.45     8e+02       8      84 ..     393     474 ..     390     531 .. 0.61
   4 ?   -1.2   5.8         1   1.9e+03      59     130 ..     515     592 ..     503     601 .. 0.70
   5 ?    1.6  10.9      0.15   2.6e+02       3     128 ..     635     765 ..     632     774 .. 0.65
   6 ?    1.6   2.7      0.14   2.5e+02      61     137 ..     856     932 ..     830     936 .. 0.71
   7 !   16.0   2.8   5.3e-06    0.0095      16      76 ..     943    1003 ..     939    1007 .. 0.92
   8 ?    3.5   8.9     0.038        69      29     105 ..    1023    1100 ..    1018    1128 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.023
  CENP-F_leu_zip  52 aevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeska 126
                     +e  +l ++i e++++ + le++++ l s+++++++e q+ ++++   ++   + ++ l + E +  +mk +++a
      EGE24912.1 220 EEYDGLIKKISEITQQKNLLETQIK-LMSDRQKIANEYQTLNQEMAHYQAKLIEHQEALTNFEPNIQRMKHAHDA 293
                     6888999****************97.6689999999999999999999999999999999999999999887665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0039
  CENP-F_leu_zip  33 lemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnss...lenlleekEqekv 118
                     l ++++ ++++ l   +  ++ +++ke+ +++++  ++l+  L+a+r+  ++++   ++ q+ +++Le+++ +   ++nll+e   ++ 
      EGE24912.1 317 LIILNHRLNEIQLSHQKRSQTHSEIKEKFNKITNDYENLKPTLQAVRRLDQHIASLRKEHQSMIQTLEKTKQDytsTQNLLKETQSNQS 405
                     55667778888888889999999******************************99999***********99752226788888766655 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.45
  CENP-F_leu_zip   8 vlekLKeserkadsLkdkvenLerelemse.enqekvileaEtskaevetlkeeieelaee....lreleldLvalrsekee 84 
                     +++ LKe+++++++L + ++ +++ ++ ++ en+ k     ++   +  tl + i +  ++     + ++  L +l+  +e+
      EGE24912.1 393 TQNLLKETQSNQSNLVQDIDTIQQKIKGIDsENLKKNLKLCDNHISQYDTLIQAITHAHQQqlwrINVFSNHLHELKDKREH 474
                     5789*******************99987651444444444556666666666655554432111134555555555555554 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1
  CENP-F_leu_zip  59 eeieelaeelreleldLvalr......sekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaavee 130
                     ++ie   e+ ++ ++ L +l       ++   ++ ++ + ++++ +L++ + +++ +le   q+  q ++ +ka +e 
      EGE24912.1 515 KNIEDQYEKIKQQSHHLYTLErilkdyEQYARIQSDISDTNRKIINLQEEKIKIQDILETVSQNIHQASQTHKAILEN 592
                     444444444444444444444444444667788999999999999999999999999999999999999988887764 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.15
  CENP-F_leu_zip   3 kkklhvlekLKeserkadsLk....dkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkq 93 
                     +  ++++ekL   e + + L+    ++   L +    ++ +qe++ +   ts      l++  +++a+   e +l+ +++   ++++ k ++++q
      EGE24912.1 635 EHAKQAKEKLVFCENQLNELNhtatQHTTTLHKLQMALDDHQEHLNTAQNTSNSLYHDLNALWQTIAS---ECSLEHANTLPSRNTIGKFIKNSQ 726
                     55556666666666665555511113333444433444556666666666666666666666666655...466777888899************ PP

  CENP-F_leu_zip  94 ervseLeslnsslenlleekEqe....kvqmkeeskaav 128
                     +++++Le++    ++ll+e+ q     ++qm e+ + ++
      EGE24912.1 727 DKIKNLEESYQLSNRLLHELNQLiaqkDRQMIEKENLKI 765
                     *******************99874444555555555544 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.14
  CENP-F_leu_zip  61 ieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaaveeLqtqlke 137
                       + +  l++ ++ L++  ++   L+++  +kq +   L++     ++ ++e+    ++++  + ++v e++tq +e
      EGE24912.1 856 FGKVQYVLSQTKQMLENQANQATALNEDYINKQTKLIHLDAQINAHTKKIQELTPVIAELEHTMANKVLEIKTQTNE 932
                     45555566677777777777777777777777777777777777777777777777777777777777777777665 PP

  == domain 7  score: 16.0 bits;  conditional E-value: 5.3e-06
  CENP-F_leu_zip   16 erkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLv 76  
                       + +++ +dk  ++ ++le++ +n  + i +   +ka++e+l+  i+ela++l++ ++ ++
      EGE24912.1  943 DHTENNYQDKLTQIRQQLENATKNVHDDIADLHAQKATIESLNLTIKELANKLSQSKVSFE 1003
                      6788999***********************************************9987765 PP

  == domain 8  score: 3.5 bits;  conditional E-value: 0.038
  CENP-F_leu_zip   29 LerelemseenqekvileaEtskaevetlkeeieelae.elreleldLvalrsekeeLekelqkkqervseLeslnss 105 
                      Le el +++   + +i +  +    +++ +e++++l + + +  + +L++l  e  +L+++l+  ++ + eL++++ s
      EGE24912.1 1023 LEDELIELKTAHDTLINQLSQTTISINNCQEKLDNLIKsNPNVHQFKLEDLHTELINLQQQLESVNQSIGELNAIKNS 1100
                      777777777777888888888888888888888776441456667788888888888888888888888888776543 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0005       0.9       3      35 ..      35      67 ..      33     124 .. 0.80
   2 ?   -1.5   0.0       1.8   3.2e+03     108     128 ..     348     369 ..     324     372 .. 0.83
   3 ?   -3.4   0.2       6.8   1.2e+04      19      70 ..     976    1030 ..     971    1048 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0005
                EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA  3 lyGppGtGKTllakavakelgvefleisgsell 35
                ++Gp G GKT++  a++  l  e  ++s s   
  EGE24912.1 35 ITGPTGAGKTTILDAICLALYGETPRLSISATQ 67
                68***************9997555444444444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
                 EESSGGGSTHHHHS.TTSSEEE CS
         AAA 108 atnrpdkldpallr.gRfdrki 128
                 +tn++++l+p l   +R+d++i
  EGE24912.1 348 ITNDYENLKPTLQAvRRLDQHI 369
                 6899999999999889999887 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 6.8
                  HHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGH CS
         AAA   19 akelgvefleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidal 70  
                  a+++ +e l++  +el +k+ + + +  ++l+++a   +       ++ DE+ +l
  EGE24912.1  976 AQKATIESLNLTIKELANKLSQSKVSFEQALMASAFDTQaefLAALILEDELIEL 1030
                  6666677777777777766444444433333333333322332355555666555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00058         1       6      24 ..      31      49 ..      27      68 .. 0.86
   2 ?   -2.1   0.1       2.4   4.3e+03      22      22 ..     534     534 ..     461     605 .. 0.60
   3 ?   -0.4   0.8      0.71   1.3e+03      19     112 ..     662     746 ..     648     759 .. 0.47
   4 ?   -2.4   0.5       2.9   5.2e+03      80      98 ..     954     969 ..     867    1055 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00058
      AAA_22  6 gilvvtGesGtGKTtllrr 24
                 + ++tG++G+GKTt l  
  EGE24912.1 31 ALFAITGPTGAGKTTILDA 49
                5679***********9876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.4
      AAA_22  22 l 22 
                 l
  EGE24912.1 534 L 534
                 2 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.71
      AAA_22  19 Ttllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka...erlsseellealeqalraravielliiDEaqhlrseealeeL 112
                 Tt+l +l++ ld         +++ + + ++ t s +l+++l   ++  +++   e +++   ++++ + +++ ++ ++  ++E   l s+++l eL
  EGE24912.1 662 TTTLHKLQMALD---------DHQEHLNTAQNT-SNSLYHDLNALWQTIASEcslEHANTLPSRNTIGKFIKNSQD-KIKNLEESYQL-SNRLLHEL 746
                 666666666663.........333333333333.444444444444444444444333344444444444444444.44444444444.44444444 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.9
      AAA_22  80 ealeqalraravielliiD 98 
                 ++++q+l+++ +    + D
  EGE24912.1 954 TQIRQQLENATK---NVHD 969
                 333333333322...2222 PP

>> DUF3885  Domain of unknown function (DUF3885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.4    0.0017         3      13      36 ..     290     313 ..     289     314 .. 0.89
   2 ?   -0.1   0.1      0.57     1e+03      15      34 ..     422     441 ..     418     442 .. 0.89
   3 ?   -3.3   0.0         6   1.1e+04      17      28 ..     684     695 ..     681     696 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
     DUF3885  13 snnketlkelYekyndWIlDYdre 36 
                 + +++ l++lY+ ++++ l+Y+++
  EGE24912.1 290 AHDAKNLQPLYTAFHEYHLEYNNK 313
                 678899***************986 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.57
     DUF3885  15 nketlkelYekyndWIlDYd 34 
                 + e lk++ + +++ I  Yd
  EGE24912.1 422 DSENLKKNLKLCDNHISQYD 441
                 67899**************9 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 6
     DUF3885  17 etlkelYekynd 28 
                 +t + lY++ n 
  EGE24912.1 684 NTSNSLYHDLNA 695
                 66789***9986 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.3   1.3e+04      16      26 ..     116     126 ..     113     128 .. 0.83
   2 ?    7.6   4.0    0.0027       4.8       4      39 ..     614     649 ..     611     667 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.3
     zf-Di19  16 eLveHvedeHr 26 
                 +L++H +d H 
  EGE24912.1 116 SLLQHADDTHG 126
                 7999****995 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0027
     zf-Di19   4 tCPyCgk.eltvkeLveHvedeHrveskevvCPvCae 39 
                 +CP Cg  e+  k   +H++deH +++ke     C++
  EGE24912.1 614 PCPLCGStEHPFKLQPHHLDDEHAKQAKEKL-VFCEN 649
                 7******77888888899*******998654.34554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3195  (0.178203); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        75  (0.00418317); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 2.32u 0.33s 00:00:02.65 Elapsed: 00:00:00.67
# Mc/sec: 5806.31
//
Query:       EGE24913.1  [L=153]
Description: hemerythrin HHE cation binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-15   55.7  14.3    7.5e-15   55.7  14.3    1.7  2  Hemerythrin    Hemerythrin HHE cation binding domain
  ------ inclusion threshold ------
      0.038   13.6   1.5        1.1    8.9   0.1    2.1  2  Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (
      0.093   12.4   0.1        0.2   11.3   0.0    1.6  2  AMNp_N         Bacterial AMP nucleoside phosphorylase N-termi


Domain annotation for each model (and alignments):
>> Hemerythrin  Hemerythrin HHE cation binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7  14.3   1.3e-18   7.5e-15       2     128 ..       6     121 ..       5     124 .. 0.91
   2 ?   -0.5   0.1      0.29   1.7e+03     106     124 ..     133     151 ..     119     153 .] 0.58

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.3e-18
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH.CCC.HHHHHHHHHHHHHHHHHHHHHH.HHCHTCG CS
  Hemerythrin   2 ivealdeeHralrallerlraladaaaevhgalrklaelldelvdeleaHhaaEEellfPlledrpggravldvlereHdeirelleelr.ellkgle 98 
                  i +al+e H++ r+l++ +++l+d+      +l+++++++ el+ el+aH aaEE++l+  + + ++g +  ++  +eH+e++e++++l+   + + +
   EGE24913.1   6 IFQALTESHDRQRKLCDKIESLMDS------DLDAAKKVYPELEIELQAHAAAEERHLYAPVMEYDDGLDLSRHAIAEHHEMDEMMHKLNdGRISDDT 97 
                  67899*******************9......399************************766555**************************55555555 PP

                  GSTCHHHHHHHHHHHHHHHHHHHHHHHTHH CS
  Hemerythrin  99 epsaaafaelleeladllreHiakEesilf 128
                        ++e  ++l+++lr+H+++Ee+++f
   EGE24913.1  98 ------WKETCHALIHELRHHLKEEEKKFF 121
                  ......*********************998 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.29
                  HHHHHHHHHHHHHHHHHHH CS
  Hemerythrin 106 aelleeladllreHiakEe 124
                  +e+l +l+++ ++H+++ +
   EGE24913.1 133 QERLGALYEVEHNHFERNN 151
                  4455555555556655555 PP

>> Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00018       1.1      60     110 ..       3      53 ..       1      66 [. 0.90
   2 ?    4.2   0.2    0.0048        29      78     127 ..      99     148 ..      82     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00018
                    HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_B  60 keealkerieqekklqslveltkslfevskeqvaleaeaferelqaklare 110
                    ++++ + + e++  +++l ++++sl+++  + ++ + +  e elqa  a+e
     EGE24913.1   3 QQDIFQALTESHDRQRKLCDKIESLMDSDLDAAKKVYPELEIELQAHAAAE 53 
                    668889999*************************************99988 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0048
                    HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_B  78 veltkslfevskeqvaleaeaferelqaklareikkkldtlvnaessrrq 127
                    +e+++ l++  +  ++ e ++f  + +  l  e +++l  l+++e+++ +
     EGE24913.1  99 KETCHALIHELRHHLKEEEKKFFIQAKKLLDEEQQERLGALYEVEHNHFE 148
                    6788999999999******************************9998765 PP

>> AMNp_N  Bacterial AMP nucleoside phosphorylase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.3e-05       0.2       5      64 ..       9      62 ..       5      65 .. 0.74
   2 ?   -3.4   0.0       1.1   6.8e+03      10      29 ..      98     117 ..      95     120 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.3e-05
                HHHHHHHHHHHHHHHHHHHHHCC-----HHHHCTTEEEEEEEEE-S--SS-SS-SSS--S CS
      AMNp_N  5 rleelYeeavaalrealeaflaggelpderaraafvYPelrvtteseaevdsrrsfgrvs 64
                +l+e ++++ + l++++e++++++    ++a++  vYPel+++ + +a +++r+ ++ v 
  EGE24913.1  9 ALTESHDRQ-RKLCDKIESLMDSDL---DAAKK--VYPELEIELQAHAAAEERHLYAPVM 62
                566666665.457888887666554...35566..9***************999998775 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHCC-- CS
      AMNp_N  10 Yeeavaalrealeaflagge 29 
                 ++e ++al ++l++ l+++e
  EGE24913.1  98 WKETCHALIHELRHHLKEEE 117
                 66777788888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1315  (0.0733449); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1206.74
//
Query:       EGE24914.1  [L=318]
Description: auxin efflux carrier [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-15   54.0  33.3      1e-10   40.6  17.6    2.0  2  Mem_trans  Membrane transport protein
  ------ inclusion threshold ------
        8.1    6.1  29.2       0.12   12.0  11.0    2.8  2  SBF        Sodium Bile acid symporter family


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   8.2   2.9e-08   0.00026       5     143 ..      11     146 ..       7     159 .. 0.80
   2 !   40.6  17.6   1.1e-14     1e-10     235     383 ..     162     305 ..     147     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.9e-08
   Mem_trans   5 avvplyvimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgslewtitlfslst 103
                  v+p +++m+lgY  +++   ++ +  ++ +++V+++ +P+l+f ++ +++  ++ l    ++   ++++++l++l  + +k+f  +l+ + +++  + 
  EGE24914.1  11 IVLPNLFLMALGYDMKRR-SALNAEFIEVASSIVFNYCLPCLLFFSVLKSDV-QI-LAQSKLLLAGFITTFTLFFLAEIYAKFFISELKDKGVFVQGVF 106
                 589999************.***************************999654.44.5555566677899999999************************ PP

   Mem_trans 104 lpNtlvlgipllkalygeygvslmvqvvvlqciiiytlll 143
                  +N++ + ++ +   yg +g+ +  +++ +  i+  +l +
  EGE24914.1 107 RSNMAIVSLATVFNAYGSEGLGVGAIYMGVITILYNVLAV 146
                 ******************5555555555543333322222 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 1.1e-14
   Mem_trans 235 ilimvlrklirnPntyssllglilslvsfkwnvimpkiiqksisilgdaglpmalfslGlfLalqpkkiacgnsvatfalavRlilgPlvmlvavlavg 333
                  ++++l+k i+nP +++++ +++  +   ++    p++i k+  +lg ++lp+al+  G++L+ + +++  g s +  a+++R ++ Pl+ +v+ +a+ 
  EGE24914.1 162 QAKSILVKIIKNPLIIALVSAFVYKALDLPML---PEFINKTGGLLGVVALPLALICAGATLNIKSMISLSGLSMQ--ASIGRIVIAPLLAVVVGVAFA 255
                 4678899********************99965...9*****************************99999999998..7******************** PP

   Mem_trans 334 LrgslllvaivqaAlPqgivlfviAkeynvherelstllifgmlialpit 383
                 L+  ++ v+ + +A+P +  ++v+Ak  + +  +++++l f++++ ++ +
  EGE24914.1 256 LEPLQFGVLFLMVASPAAAASYVMAKAMGGNDILAANILGFTTVFGMIGM 305
                 *****************************************999877655 PP

>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4  11.7      0.36   3.2e+03      24     143 ..      64     212 ..      51     223 .. 0.74
   2 ?   12.0  11.0   1.3e-05      0.12      36     114 ..     238     312 ..     206     315 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.36
         SBF  24 lkrpkalllglvlqwvikPllmfilakillrdl..........................klepelavGlilvglapggamsnvwtylakGdl.elsvvl 95 
                 l + k+ll+g++ ++++  +l+ i ak++++ l                            ++ l vG i +g+      ++++  l++  + + sv +
  EGE24914.1  64 LAQSKLLLAGFITTFTL-FFLAEIYAKFFISELkdkgvfvqgvfrsnmaivslatvfnaYGSEGLGVGAIYMGVITILYNVLAVITLSRTTQkADSVFM 161
                 55666777777777766.45555666655555566677777777777777777777766889999**********999999988888887774779*** PP

         SBF  96 valstllailltPlllyllaksl.eqttlkvpieei..vksvlivviiPli 143
                  a s l++i+  Pl+++l+++ + +   l+   e i   + +l vv +Pl+
  EGE24914.1 162 QAKSILVKIIKNPLIIALVSAFVyKALDLPMLPEFInkTGGLLGVVALPLA 212
                 *******************99995555666655666334456777777776 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.3e-05
         SBF  36 lqwvikPllmfilakillrdlklepelavGlilvglapggamsnvwtylakGdlelsvvlvalstllailltPlllyll 114
                    vi Pll+++  +     + lep +   l l++++p +a+s+v+++ ++G+  l++ +  ++t++ ++ +++ ++ll
  EGE24914.1 238 GRIVIAPLLAVVVGV----AFALEPLQFGVLFLMVASPAAAASYVMAKAMGGNDILAANILGFTTVFGMIGMAVGMALL 312
                 45689**********....7888999999999**************************************999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2212.75
//
Query:       EGE24915.1  [L=36]
Description: hypothetical protein EA1_06521 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       167  (0.00931452); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 274.68
//
Query:       EGE24916.1  [L=632]
Description: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     1e-164  548.3   0.0   1.6e-164  547.7   0.0    1.3  1  GIDA           Glucose inhibited division protein A
    1.9e-77  260.2   0.1      3e-77  259.5   0.1    1.3  1  GIDA_assoc     GidA associated domain
    3.6e-08   33.2   1.8    5.8e-08   32.5   1.8    1.4  1  FAD_oxidored   FAD dependent oxidoreductase
    6.1e-06   25.7   1.0    1.8e-05   24.2   1.0    1.7  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00017   20.9   0.1    0.00049   19.5   0.1    1.7  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    0.00068   18.8   7.5    0.00076   18.7   1.5    2.3  2  FAD_binding_2  FAD binding domain
     0.0061   15.3   2.8      0.022   13.5   0.4    2.7  3  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
       0.31   10.6   3.6        3.1    7.3   0.3    2.3  2  DAO            FAD dependent oxidoreductase
        1.7    8.6   3.7       0.46   10.5   0.1    1.8  2  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  547.7   0.0  7.9e-168  1.6e-164       1     390 [.      13     402 ..      13     404 .. 0.99

  Alignments for each domain:
  == domain 1  score: 547.7 bits;  conditional E-value: 7.9e-168
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-HHHHHH CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpavralraqvdrelysk 99 
                 dviViGgGhAG+eA+laaar+Ga++lLith+++t++++sCnp+iggi+k++lvrE+dalgg ++ a+dkagiqfr+lN++kG avra+raq+dr ly++
  EGE24916.1  13 DVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQMSCNPAIGGIGKSHLVREVDALGGAMALATDKAGIQFRVLNSRKGAAVRATRAQADRILYKA 111
                 8************************************************************************************************** PP

                 HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-EEEETTEEEESSCTTC--B-THHHHHHHTT--EEEEEEEE--EE CS
        GIDA 100 evteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkgkihigekelsaGrlgeltseglseslkelgfellrlktgtppri 198
                 +++++len+pnl+i++++v+++ive+++  +vvt++g  ++++avv+++Gtfl g ih+g ++ s Gr+g++++ +l+++l+el+  ++rlktgtp+ri
  EGE24916.1 112 AIRHTLENQPNLTIFQQSVDDIIVENTRAVAVVTATGIRLNTRAVVLTSGTFLGGVIHVGLDHQSGGRAGDMPAIRLADRLRELKLPVGRLKTGTPARI 210
                 *************************************************************************************************** PP

                 EGGGS-TTTSEEE---SS-B-SSSSSSST.CG----EEEEE--HHHHHHHHCTCCC-T.T----B--S-CCC-SSTCCCCCCSTT-S--EEEEEESSTT CS
        GIDA 199 dkesidfskleeqsgdkegeefsylnkpl.nkeqvecfltatneathkiikenlkksaklfegcieelgprycpsiedkivrladkeshqvfLepegle 296
                 d++++dfs+++ qsgd++ + +sy+ +   + +q++c++t+tne+th+ii++nl++s+ +f+g+ie++gprycpsiedki r+adk+shq+f+epegl+
  EGE24916.1 211 DARTVDFSVMTVQSGDTPLPVMSYMGDVAmHPRQINCYITHTNERTHEIIRANLDRSP-MFSGKIEGVGPRYCPSIEDKIHRFADKDSHQIFIEPEGLT 308
                 *****************999*****987659***************************.**************************************** PP

                 --EEEEET----S-HHHHHHHHTTSTT-TT--EEE--EEEEEEEE-GGGB-TTSBBSSSBTEEE-CGGGTB-SHHHHHHHHHHHHHHHHHHHCT CS
        GIDA 297 teliylvgfstslpeevqkevlrsipGLenaeivrpGyaieydyvdprqllntLetkkvkgLflAGqinGteGYeEaaaqGllAGinaarkakg 390
                 t+++y++g+stslp++vq e+++s++GLena+i+rpGyaieydy+dp++l++tLetk+++ L++AGqinGt+GYeEaaaqGllAG+naar a +
  EGE24916.1 309 THELYPNGISTSLPFDVQLEFIHSMKGLENAHITRPGYAIEYDYFDPQNLKPTLETKSIDALYFAGQINGTTGYEEAAAQGLLAGLNAARMALD 402
                 ******************************************************************************************9876 PP

>> GIDA_assoc  GidA associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.5   0.1   1.5e-80     3e-77       1     209 [.     406     617 ..     406     618 .. 0.91

  Alignments for each domain:
  == domain 1  score: 259.5 bits;  conditional E-value: 1.5e-80
                 ----TTT-HHHHHHHHHHHH--SS-B-CCCB--TTTCCC-CCCHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHH...... CS
  GIDA_assoc   1 lilkRseaYiGVLiDDLvtkgvkEPYRmfTSRaEyRlllRaDnAdlRLtekgrelGlvseeryekfeekkeeieelkellkstklkseewkkl.....l 94 
                 ++ +R+eaY+GVL+DDL+t+g+kEPYRmfTSRaE+Rl+lR+DnAd RLt +grelGlv++er+++f++k+e+i++++++lk+++ +++++  +     +
  EGE24916.1 406 WVPQRHEAYLGVLVDDLITHGTKEPYRMFTSRAEHRLILREDNADARLTAIGRELGLVDDERWARFSQKMESIASETARLKDIWATPNNAIGQdfmanT 504
                 5789*******************************************************************************9955555444355445 PP

                 HHHT....EHHHHCTTST--HHHHHCCHHHHHHHSCHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHTSB--TTS-CCCSTT--CHHHHHHHHH--SCHH CS
  GIDA_assoc  95 ekkeskklslaellkrpevkledlleelpeeeeeseeeleqveieakYegyiekqeeeieklkkeenlkipedldYskikgLskearekLkkvrPetlg 193
                  +  +k+ sl++llkrp++ ++d+ +++++ ++ s+++ eq+ei++kY+gyie+q++eie++k++en+ +p d+dY++++gLs+e ++kL+++rP+tlg
  EGE24916.1 505 GEILTKENSLLDLLKRPNIAFDDI-AKVSD-STVSAKVGEQIEISVKYQGYIERQNDEIEQMKRLENTLLPLDFDYKSVSGLSNEIVQKLSQIRPTTLG 601
                 55556666****************.45544.4788888************************************************************* PP

                 HHTTSTTS-HHHHHHH CS
  GIDA_assoc 194 qAsrisGvtpaaisvL 209
                 qAsrisGvtpaa+s+L
  EGE24916.1 602 QASRISGVTPAAVSLL 617
                 *************998 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   1.8   2.9e-11   5.8e-08       1     150 [.      13     169 ..      13     266 .. 0.72

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.9e-11
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLve..........ergvlGGlltsglvatdignkaee.qvvtgiareflerlrqrggarlkkrskwntfep 86 
                   Dv+V+GGg aG+ A +aAar+Ga++lL+            ++ +GG   s lv  ++    +   ++ +   +f+  + ++g+a  +++++    + 
    EGE24916.1  13 DVIVIGGGHAGTEACLAAARMGANTLLIThnietlgqmsCNPAIGGIGKSHLVREVDALGGAMaLATDKAGIQFRVLNSRKGAA-VRATRA--QADR 106
                   9**************************993222222222234555555555555555544333333333334444444333333.333333..3899 PP

  FAD_oxidored  87 evakavleeml.aeagvtvllntrlvevekegkriesvtveskeg.rktirAkvfiDATgdGdlaa 150
                     +ka++ + l +++++t+ +++ ++++++e++r  +v+++  +g r + rA v   +T  G +++
    EGE24916.1 107 ILYKAAIRHTLeNQPNLTI-FQQSVDDIIVENTRAVAVVTA--TGiRLNTRAVVLTSGTFLGGVIH 169
                   9999999999966678776.677889999997666666654..47788888888877777777665 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   1.0   8.8e-09   1.8e-05       1      58 [.      12     114 ..      12     163 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 8.8e-09
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................... RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias......................................... 57 
                  +dv+viGgG+AG++a l +a+ ga+++l+   +   +g+++  +a+ g+++ + +++                                         
   EGE24916.1  12 FDVIVIGGGHAGTEACLAAARMGANTLLI-THNIETLGQMSCNPAIGGIGKSHLVREvdalggamalatdkagiqfrvlnsrkgaavratraqadril 108
                  69***************************.88888899999999999999988777777788888777766666665555555544444444444444 PP

                  .....H CS
                  .....x RF
  Pyr_redox_2  58 .....e 58 
                       +
   EGE24916.1 109 ykaaiR 114
                  443333 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   2.4e-07   0.00049      30      67 ..      13      50 ..       5      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.4e-07
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleql 67
                  v+viGgG aG++A  +a+++ga++ ++  ++++l q+
   EGE24916.1 13 DVIVIGGGHAGTEACLAAARMGANTLLITHNIETLGQM 50
                 69**************************9999999886 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.5   3.8e-07   0.00076       1      33 [.      13      45 ..      13      60 .. 0.89
   2 ?    3.4   0.5     0.017        33     140     204 ..     110     165 ..      63     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.8e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   DviViG+G AG  A l+aa+ G+++++++   e
     EGE24916.1 13 DVIVIGGGHAGTEACLAAARMGANTLLITHNIE 45
                   9**************************987655 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.017
                    HHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 140 ghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr 204
                      a+ ++l ++         ++ ++d++ive+ r++ +v +     +  r++ +avvl++g f +
     EGE24916.1 110 KAAIRHTLENQP----NLTIFQQSVDDIIVENTRAVAVVTA-----TGIRLNTRAVVLTSGTFLG 165
                    444444444444....44457789*********99999888.....55567889*******9865 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.4   1.1e-05     0.022       1      33 [.      12      44 ..      12      57 .. 0.91
   2 ?   -1.2   0.1      0.32   6.3e+02     120     163 ..     118     161 ..      96     163 .. 0.80
   3 ?    0.1   0.0      0.13   2.6e+02     369     390 ..     361     379 ..     331     393 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekak 33
                 +dviviGgG AG  a+++aa+ g+++ll+ ++ 
   EGE24916.1 12 FDVIVIGGGHAGTEACLAAARMGANTLLITHNI 44
                 59***************************9985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.32
                  HHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 120 keagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  +++      +++v ++  e+++++ v t ++ +l+++++vl++G
   EGE24916.1 118 ENQPNLTIFQQSVDDIIVENTRAVAVVTATGIRLNTRAVVLTSG 161
                  555455567899999999999999999999999********998 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.13
                  T-BBTTSTTEEE-GGGBSEEE- CS
  HI0933_like 369 tmeskkvpgLffaGEvlDvegv 390
                  t+e+k++  L+faG +   +g 
   EGE24916.1 361 TLETKSIDALYFAGQI---NGT 379
                  89************76...444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.3     0.014        29       1      26 [.      13      40 ..      13      53 .. 0.85
   2 ?    7.3   0.3    0.0016       3.1     132     206 ..      93     167 ..      63     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.014
                EEEEECTSHHHHHHHHHHHHTT..EEEE CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtll 26
                dv++iGGG +G  + +++ar g  ++l+
  EGE24916.1 13 DVIVIGGGHAGTEACLAAARMGanTLLI 40
                8***********9999998888876665 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0016
                 SEEEEETTEEEEEHHHHHHHHHHHHHHTT.-EEEESECEEEEEEEETCEEEEEEECT.EEE.EEEEEEEE--GGGHH.H CS
         DAO 132 lgalfypdtgqvdpakltaalaraaealG.veilegtevtgleeedgkvwgverttp.gen.daadavVnaaGawsd.l 206
                 +ga +  + +q+d   + aa+++++e++   +i+++  v ++  e+ +++ v  +t+ g++  + +avV++ G + +  
  EGE24916.1  93 KGAAVRATRAQADRILYKAAIRHTLENQPnLTIFQQ-SVDDIIVENTRAVAV--VTAtGIRlNT-RAVVLTSGTFLGgV 167
                 456555555888888888888888888862567776.9***97777677777..5666999666.9*******996643 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.5       2.5   4.9e+03       2      15 ..      16      29 ..      15      38 .. 0.81
   2 ?   10.5   0.1   0.00023      0.46     107     155 ..     113     162 ..     105     163 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.5
  NAD_binding_9  2 ivGaGprGlavler 15
                   ++G+G +G+ ++ +
     EGE24916.1 16 VIGGGHAGTEACLA 29
                   8*******988765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00023
  NAD_binding_9 107 llarlpegvtvevhraevvdleeradgq.avlladgaslaadaVvLAlGh 155
                    +  +l+++ ++++++++v d+  +++++ av++a+g +l  +aVvL+ G 
     EGE24916.1 113 IRHTLENQPNLTIFQQSVDDIIVENTRAvAVVTATGIRLNTRAVVLTSGT 162
                    3446688889**********9999988659******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4279.51
//
Query:       EGE24917.1  [L=62]
Description: hypothetical protein EA1_06531 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.049   13.5   0.3      0.068   13.0   0.3    1.4  2  LEAP-2    Liver-expressed antimicrobial peptide 2 precursor (


Domain annotation for each model (and alignments):
>> LEAP-2  Liver-expressed antimicrobial peptide 2 precursor (LEAP-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   3.8e-06     0.068       1      23 [.       1      23 [.       1      41 [. 0.81
   2 ?   -2.4   0.0      0.25   4.4e+03      22      36 ..      47      61 ..      42      62 .] 0.63

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.8e-06
      LEAP-2  1 mhhlkllavllvcllllsqvdss 23
                m+ + +la+++ c+ll + v+  
  EGE24917.1  1 MKLFSVLAIFMTCTLLSACVHKV 23
                677889**********9999864 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.25
      LEAP-2 22 ssplpqqssakrrlr 36
                 + +p++s+ k+ ++
  EGE24917.1 47 KAIIPNDSNDKKDKK 61
                566777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 470.09
//
Query:       EGE24918.1  [L=143]
Description: 50S ribosomal protein L13 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-58  194.4   0.2    7.6e-58  194.2   0.2    1.0  1  Ribosomal_L13  Ribosomal protein L13
  ------ inclusion threshold ------
      0.067   13.1   0.0       0.11   12.5   0.0    1.4  1  DUF3659        Protein of unknown function (DUF3659)


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   0.2   8.4e-62   7.6e-58       2     125 .]      16     139 ..      15     139 .. 0.99

  Alignments for each domain:
  == domain 1  score: 194.2 bits;  conditional E-value: 8.4e-62
                    EEEEEETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSHHHHHHHHHHCCS- CS
  Ribosomal_L13   2 WyviDAegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkpeeilekaVkgmLp 97 
                    Wyv+DAeg++lgrlas+ia++LrGkhkp+ytphvd+Gdy+vvina+k+a+ gkk+++k+yyrhtgypgg+ke+++++ll++kpe +l kaVkgmLp
     EGE24918.1  16 WYVVDAEGKTLGRLASEIASRLRGKHKPSYTPHVDTGDYIVVINADKIAVAGKKAQDKKYYRHTGYPGGIKETNFTKLLAHKPEDVLFKAVKGMLP 111
                    ************************************************************************************************ PP

                    SSHHHHHHGCTEEEESSSTTSGGGGSCE CS
  Ribosomal_L13  98 knklgrrrlkrLkvyageehpheaqkpe 125
                    k+ lg +++k+Lk+yag+ehph+aq+p+
     EGE24918.1 112 KGPLGYAMIKKLKLYAGTEHPHTAQQPK 139
                    **************************96 PP

>> DUF3659  Protein of unknown function (DUF3659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.2e-05      0.11      10      37 ..      14      41 ..       8      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
     DUF3659 10 kaGevvdeeGnvvGrvveGdlkkLaGkk 37
                 +  vvd+eG+++Gr+++  +++L Gk 
  EGE24918.1 14 HDWYVVDAEGKTLGRLASEIASRLRGKH 41
                5558***************999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1131.05
//
Query:       EGE24919.1  [L=128]
Description: 30S ribosomal protein S9 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-44  151.1   0.2    2.1e-44  150.9   0.2    1.0  1  Ribosomal_S9  Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.2   1.2e-48   2.1e-44       1     121 []       8     128 .]       8     128 .] 0.99

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 1.2e-48
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCCTS- CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllgkfdvfvkvkgGGlsgqaeAirlgiaraLvalekeekkeLkkaglltr 97 
                   GrrK+s+Arv + +g+g+i+vngksl+eYf +e++r+ v +pl+l++l++++d +++v gGG+ gqa+Air+gi+raL++ ++++k++Lk+ag++tr
    EGE24919.1   8 GRRKTSTARVFLSKGTGNIVVNGKSLDEYFGRETSRMVVRQPLELLELTDSVDLYITVVGGGINGQAGAIRHGITRALIESDESHKPALKAAGFVTR 104
                   9*****************************99**************************************************988************ PP

                   B--------TTSSCTTB----S-- CS
  Ribosomal_S9  98 DpRvvErkKtgkkkARkkyqwskR 121
                   D+R vErkK g++kARk++q+skR
    EGE24919.1 105 DAREVERKKLGLRKARKRPQFSKR 128
                   ***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 967.78
//
Query:       EGE24920.1  [L=194]
Description: ubiquinol-cytochrome c reductase iron-sulfur subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-16   57.1   0.6    8.1e-16   57.1   0.6    1.7  2  UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit T
    1.4e-13   50.6   0.0    3.9e-13   49.2   0.0    1.6  1  Rieske      Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.6     9e-20   8.1e-16       1      41 []       1      41 [.       1      41 [. 0.99
   2 ?   -5.4   2.3         2   1.8e+04      27      31 ..      47      51 ..      46      52 .. 0.34

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 9e-20
  UCR_Fe-S_N  1 mseaesdeptRRDFLyiATgavgaVGaaaaawPfidqmnPs 41
                ms+ae+++ +RR++L+++T+a+gaVG++a a Pf++++ Ps
  EGE24920.1  1 MSHAEGVNIKRRRVLIATTAAIGAVGVGAIATPFVRSWYPS 41
                89**************************************8 PP

  == domain 2  score: -5.4 bits;  conditional E-value: 2
  UCR_Fe-S_N 27 aaaaa 31
                a+aa+
  EGE24920.1 47 AGAAV 51
                33333 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   4.3e-17   3.9e-13       6      87 ..      53     179 ..      49     182 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 4.3e-17
                 EEGGGC-TTCEEEEEETTEEEEEEE-TTS-EE....................................EEESC-TTTT-BC........GG.SEEETT. CS
      Rieske   6 akesdvpegdpltvkvggeplvvlrdedgevy....................................AlsdvCtHrgapl........se.gkidekg 59 
                    s +++g++ tvk+ g+p++v++   +e++                                    ++++vCtH+g+ +        ++ g+ d+ g
  EGE24920.1  53 QDISGIENGQMITVKYRGKPIFVVKRT-EEMVanlskvtpklsdpnseasvqpeacknetrslqpellVVEGVCTHLGCAPtyrpevgaADlGGADWFG 150
                 55566789*****************64.4444477777778888888888888888888888888888************9999999986668888999 PP

                 EEE-TTT--EEETTSBEEE-.TTHHHEEE CS
      Rieske  60 vleCpcHgwaydadGkvikg.Paprplat 87 
                  + CpcHg+ yd +G+v +g Pap++l+ 
  EGE24920.1 151 GFFCPCHGSLYDLAGRVYNGvPAPTNLPV 179
                 ******************999***99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1488.78
//
Query:       EGE24921.1  [L=401]
Description: cytochrome b/b6 N-terminal domain precursor [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-62  210.5  15.8    1.8e-62  210.5  15.8    2.1  2  Cytochrome_B     Cytochrome b/b6/petB
      1e-42  144.6   2.9      1e-42  144.6   2.9    3.5  4  Cytochrom_B_C    Cytochrome b(C-terminal)/b6/petD
    1.5e-42  145.5   6.7    1.5e-42  145.5   6.7    2.2  2  Cytochrom_B_N_2  Cytochrome b(N-terminal)/b6/petB
  ------ inclusion threshold ------
        2.8    7.5  28.8       0.52    9.9   4.2    3.8  4  Ni_hydr_CYTB     Prokaryotic cytochrome b561


Domain annotation for each model (and alignments):
>> Cytochrome_B  Cytochrome b/b6/petB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.5  15.8   4.1e-66   1.8e-62       3     189 .]      20     207 ..      18     207 .. 0.98
   2 ?   -1.2   1.5      0.34   1.5e+03     130     167 ..     335     377 ..     282     388 .. 0.59

  Alignments for each domain:
  == domain 1  score: 210.5 bits;  conditional E-value: 4.1e-66
  Cytochrome_B   3 sllvpsnlsiiynlGsllllvlvlqiltGvalafyytptvtlaflsvqyilrdvnfGwlirsvhangasllflllylhifrglllgglkktrelvWv 99 
                   ++++p+n + +y +G l ++vlv q++tG+ l++ ++p+ + af+s++yi+rdv+ Gwlir++h +gas +f+++ylh+frgll+g++kk+relvW+
    EGE24921.1  20 KYYAPKNFNFWYFFGVLSMVVLVNQLVTGIWLTMMFNPSAEGAFASLEYIMRDVKGGWLIRYMHSTGASAFFIVVYLHMFRGLLYGSYKKPRELVWL 116
                   6899********************************************************************************************* PP

  Cytochrome_B 100 iGvillllvivtafiGyvLpwdqmsyWavtvitnllsaiPviGstlvellwgsvsvddatLtrffslh.fllPflllillllhllllhktg 189
                   iG+ + l +++++f Gy Lpw+ msyW+++vi nl++aiP+iG++l e+++g   ++  tL+rff+lh + +P++l+ l+ +hl++lh+ g
    EGE24921.1 117 IGMGIYLCLMAEGFFGYLLPWGNMSYWGAQVILNLPAAIPFIGDALAEWVRGDYLISGITLNRFFALHvIAIPLVLVGLVFMHLVALHHVG 207
                   ********************************************************************6669****************875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.34
  Cytochrome_B 130 vitnllsaiPviGstlvellwgsvsvddatL.....trffslh 167
                   ++++++ ai v+ ++   +l g++s   at+     t ++ l+
    EGE24921.1 335 MLSKIALAIFVVSFVTLGYLGGTASTPTATIigricTILYFLY 377
                   4555666666666666666666666666664222223344444 PP

>> Cytochrom_B_C  Cytochrome b(C-terminal)/b6/petD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   3.1      0.45     2e+03      15      36 ..      30      51 ..      16     124 .. 0.66
   2 ?   -2.0   0.0      0.96   4.3e+03      67      88 ..     191     212 ..     181     217 .. 0.67
   3 ?   -1.1   0.2      0.54   2.4e+03      30      48 ..     240     259 ..     231     260 .. 0.61
   4 !  144.6   2.9   2.3e-46     1e-42       2     103 .]     274     375 ..     273     375 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.45
                   GGGHHHHHHHHCSSSHHHHHHH CS
  Cytochrom_B_C 15 WYflpfYaiLraipakllGvva 36
                   WYf+ + +++  +++ + G+ +
     EGE24921.1 30 WYFFGVLSMVVLVNQLVTGIWL 51
                   7777777777666666666533 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.96
                    HHHHHHHHHHHHHHHHHTS-SS CS
  Cytochrom_B_C  67 vllallvvsfvvLgylGvqppe 88 
                    vl+ l+++++v+L  +G+++p+
     EGE24921.1 191 VLVGLVFMHLVALHHVGSNNPD 212
                    4555666777777777776665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.54
                    HHHHHHHHHHH.HHGGGCHH CS
  Cytochrom_B_C  30 kllGvvamgaa.ivilfllp 48 
                     ++G+v++++  ++++f++p
     EGE24921.1 240 DMVGIVVFFICfFAVVFFVP 259
                    45676666554155666666 PP

  == domain 4  score: 144.6 bits;  conditional E-value: 2.3e-46
                    --TTC--TT----GGGHHHHHHHHCSSSHHHHHHHHHHHHHGGGCHHHH---SSSSSTT-.HHHHHHHHHHHHHHHHHHHHHTS-SSCCHHHHHHH CS
  Cytochrom_B_C   2 anplktPahIaPeWYflpfYaiLraipakllGvvamgaaivilfllpwldrskvksiryrkplakvllallvvsfvvLgylGvqppeevavllsqi 97 
                    an lktP+hIaP+WY++pfYaiLra+p+kl+Gv+amgaai++lf+lpwldrs+v+siry+++l+k++la++vvsfv+LgylG +  +++a+++++i
     EGE24921.1 274 ANALKTPPHIAPVWYYMPFYAILRAVPHKLGGVIAMGAAIAVLFVLPWLDRSPVRSIRYKGMLSKIALAIFVVSFVTLGYLGGTASTPTATIIGRI 369
                    9*********************************************************************************************** PP

                    HHHHHH CS
  Cytochrom_B_C  98 atvlyF 103
                    +t+lyF
     EGE24921.1 370 CTILYF 375
                    *****9 PP

>> Cytochrom_B_N_2  Cytochrome b(N-terminal)/b6/petB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.22     1e+03      16      49 ..      17      52 ..      13      62 .. 0.67
   2 !  145.5   6.7   3.3e-46   1.5e-42       2     163 ..      89     259 ..      88     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.22
  Cytochrom_B_N_2 16 ftGaYkkpRelnWi..iGvllllltllegflGysLp 49
                      +  Y +p+++n++   Gvl +++ + + ++G  L+
       EGE24921.1 17 HMSKYYAPKNFNFWyfFGVLSMVVLVNQLVTGIWLT 52
                     556677777777652357777777777777776664 PP

  == domain 2  score: 145.5 bits;  conditional E-value: 3.3e-46
  Cytochrom_B_N_2   2 imiiliyvHmlrvfftGaYkkpRelnWiiGvllllltllegflGysLpddllsvtalrvgagiissvPvvgtwlvellfGgelpgeallsrlya 95 
                      +++i++y+Hm+r +++G+YkkpRel W+iG+ + l+ ++egf+Gy+Lp+  +s+++ +v+ ++  ++P++g+ l+e++ G++l++  +l+r++a
       EGE24921.1  89 AFFIVVYLHMFRGLLYGSYKKPRELVWLIGMGIYLCLMAEGFFGYLLPWGNMSYWGAQVILNLPAAIPFIGDALAEWVRGDYLISGITLNRFFA 182
                      799******************************************************************************************* PP

  Cytochrom_B_N_2  96 lHilllpalllalivahlllvekkgqtp......srrkek.......nvvgeplvpvnavkmlllflvlvallialalinP 163
                      lH++ +p +l+ l+++hl+ +++ g+++      +    k       + +g+p++p+++v ++++++v+++ + a++++ P
       EGE24921.1 183 LHVIAIPLVLVGLVFMHLVALHHVGSNNpdgidiK----KlkdkngvPLDGVPFHPYYTVHDMVGIVVFFICFFAVVFFVP 259
                      ***************************94444441....112222335577*****************9999999999888 PP

>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.2   0.00012      0.52     103     169 ..      28     105 ..       3     114 .. 0.74
   2 ?    6.2   6.5    0.0015       6.8      17     117 ..     121     256 ..     113     258 .. 0.76
   3 ?    6.7   0.1    0.0011         5      41      64 ..     233     257 ..     213     282 .. 0.77
   4 ?    1.1   3.2      0.06   2.7e+02      41      99 ..     292     335 ..     271     385 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00012
                   T....THHHHHHHHHHHHHHHHHHHT.......HHHHHHHH......HTS-THHHHHHH.HHHHHHHHHHHHHHHHHHHHH CS
  Ni_hydr_CYTB 103 l....vhlllyvllvvliltGlllsf.......aatagfpll...lddkggaqlarelHellaaallafvvlHiaaallhg 169
                        +++l +v+lv + +tG++l              f +l    +d +g  l+r +H   a+a++++v lH +  ll g
    EGE24921.1  28 NfwyfFGVLSMVVLVNQLVTGIWLTMmfnpsaeG---AFASLeyiMRDVKGGWLIRYMHSTGASAFFIVVYLHMFRGLLYG 105
                   355445566678888899***9998788885443...44444666****************************88766655 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0015
                   HHHHHHHHHHHHS------S-GGG-..................................HHHHHHHHHHHHHHHH.HHHHHHH------------ST CS
  Ni_hydr_CYTB  17 vvllllsgllianlhprlywgdsgk..................................aralHklaGlvllall.lfrllwlkkakkpspriifrq 78 
                   + l l+   ++ +l p  ++  +g+                                  ++alH +a  ++l+ l ++ l+ l +  ++ p+ i ++
    EGE24921.1 121 IYLCLMAEGFFGYLLPWGNMSYWGAqvilnlpaaipfigdalaewvrgdylisgitlnrFFALHVIAIPLVLVGLvFMHLVALHHVGSNNPDGIDIK 217
                   555555444455555555555555566677777777778888888888888888889999999*996665555552666666699999********* PP

                   TTSSSSS----------------TTTHHHHHHHHHHHHH CS
  Ni_hydr_CYTB  79 ikrdltlllrgrkpeagknnplqklvhlllyvllvvlil 117
                     +d  ++     p +++++   +  +++++++++++++
    EGE24921.1 218 KLKDKNGVPLDGVPFHPYYTVHDMVGIVVFFICFFAVVF 256
                   *************************99999999998875 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0011
                   -.HHHHHHHHHHHHHHHHHHHHHHH CS
  Ni_hydr_CYTB  41 k.aralHklaGlvllalllfrllwl 64 
                   + ++++H ++G+v++++ +f +++ 
    EGE24921.1 233 HpYYTVHDMVGIVVFFICFFAVVFF 257
                   24699*************8888877 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.06
                   -...HHHH.HHHHHHHHHHHHHHHHHHH..........------------STTTSSSSS-------------- CS
  Ni_hydr_CYTB  41 k...aral.HklaGlvllalllfrllwl..........kkakkpspriifrqikrdltlllrgrkpeagknnp 99 
                   +   +ra+ Hkl G++ ++  +++l++l          +                             +++ +
    EGE24921.1 292 FyaiLRAVpHKLGGVIAMGAAIAVLFVLpwldrspvrsI-----------------------------RYKGM 335
                   123356779999888888888888888843344444431.............................22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2793.25
//
Query:       EGE24922.1  [L=241]
Description: cytochrome c1 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-21   77.1   0.1    3.6e-19   69.4   0.1    2.2  1  Cytochrom_C1     Cytochrome C1 family
     0.0029   17.9   0.0     0.0071   16.6   0.0    1.7  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
       0.06   14.5   0.0       0.09   13.9   0.0    1.5  1  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrom_C1  Cytochrome C1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.1   6.1e-23   3.6e-19      10     219 .]      58     240 ..      51     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 6.1e-23
  Cytochrom_C1  10 fDkaqlqRGlqvykevcsaCHslklvafrnLae.lglteeevkalaaeyevkdgpddegemfeRpgkpaDklpspyaneeaaraanggalppDLsll 105
                    +k +lqRG  ++ + c+ CHs ++v++  La+ l ++ e v+++   +         g+         D++ +    e +++    ga+ppDLsl 
    EGE24922.1  58 TNKGSLQRGAAMFMNYCAGCHSAQYVRHSRLAQdLNIPPELVEKYLLVT---------GD------AIGDHINAGIDPELQSQWF--GAAPPDLSL- 136
                   57899**************************987999999888774332.........33......5689999999999999988..********9. PP

  Cytochrom_C1 106 vkArkggadYiyslLtgYeeppagvevkegqyyNkyfpggviamakpLsdgqveyedgtpatveqmakDvtaFLaWaaepklearkklglkvilfll 202
                    + r +g d++y  L ++ e p+    + g   N + +  + am+++L + q e   g +++ e    D+++F+aW aep  ++rk  g  vilfll
    EGE24922.1 137 -ETRLRGDDWVYTYLLSFYEDPS---RPWG-ANNLVLA--NAAMPHVLHNLQEE--LG-KEEYEARVGDLVNFMAWMAEPVRHDRKIYGAFVILFLL 223
                   .5678899****99999988887...2333.3344443..469*****665543..44.456777889***************************** PP

  Cytochrom_C1 203 ilavllylvkrkiwakv 219
                   il + +yl+++++w++v
    EGE24922.1 224 ILLIPVYLLNKEFWKDV 240
                   **************975 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.2e-06    0.0071       3      45 ..      63     118 ..      61     135 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-06
  Cytochrome_CBB3   3 aaaGaalykknCasCHgkggag.pslagr.dwep...........dalvdiiknGk 45 
                      +++Gaa + ++Ca+CH ++ +    la++ + +p           da+ d+i+ G+
       EGE24922.1  63 LQRGAAMFMNYCAGCHSAQYVRhSRLAQDlNIPPelvekyllvtgDAIGDHINAGI 118
                      689*************9665544444433333443333344444588888888886 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05      0.09       2      21 ..      64      83 ..      63     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
                 --HHHHHHTTGGGTB-SSSB CS
  Cytochrom_C  2 arGkelftanCaaCHgvegg 21
                 +rG++ f++ Ca+CH+++  
   EGE24922.1 64 QRGAAMFMNYCAGCHSAQYV 83
                 69*****99******98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1734.49
//
Query:       EGE24923.1  [L=207]
Description: stringent starvation protein A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-10   39.6   0.2    1.3e-09   38.2   0.3    1.7  2  GST_N     Glutathione S-transferase, N-terminal domain
    8.9e-10   38.8   0.1    1.8e-09   37.9   0.1    1.5  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    2.5e-08   34.1   0.2    5.9e-08   32.9   0.2    1.6  2  GST_N_2   Glutathione S-transferase, N-terminal domain
      0.002   18.1   0.0     0.0035   17.3   0.0    1.4  1  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0045   17.2   0.0     0.0081   16.4   0.0    1.5  1  GST_C     Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.045   14.3   0.0      0.074   13.6   0.0    1.4  1  GST_C_5   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.3   4.5e-13   1.3e-09       3      75 ..      12      79 ..      10      80 .. 0.92
   2 ?   -2.6   0.0       2.5   7.4e+03      42      59 ..     134     154 ..     121     158 .. 0.67

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 4.5e-13
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedngkkltESraIleYia 75
                ++ly   g +++h +rlll++k ++ye+v++     ee+++el+ lnp+  +P L+ ++  l E ++I+eY++
  EGE24923.1 12 FILYADHG-INSHIVRLLLEEKHLNYETVFIG----EERPEELIELNPYHTLPILVNRDISLYEHNVIFEYLE 79
                56777777.89********************9....8889*******************************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
                 C..HHHHHHCTT.S-SSEEEE CS
       GST_N  42 s..pellklnpl.gkvPaLed 59 
                 s  + l+ + pl g  P++  
  EGE24923.1 134 SlsDSLVTIAPLfGHKPYFMS 154
                 334667778888888888865 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1     6e-13   1.8e-09       9      72 ..      21      83 ..      14      92 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 6e-13
                HHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH- CS
     GST_N_3  9 yarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLeddgealtdSlaIidyLeelyp 72
                ++  vrl+L+ek+l +e+v + ++e++eel + np++++P+L+  + +l++  +I +yLee++ 
  EGE24923.1 21 NSHIVRLLLEEKHLNYETVFI-GEERPEELIELNPYHTLPILVNRDISLYEHNVIFEYLEERHR 83
                56679*************998.77889***********************************96 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.2     2e-11   5.9e-08       5      69 ..      22      80 ..      20      81 .. 0.93
   2 ?   -2.6   0.0       2.3   6.9e+03      45      50 ..     164     169 ..     116     176 .. 0.62

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2e-11
                HHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  5 ahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                +h v+++l++k l +++ ++     g+e++ee+ +lnp+ t+P+L+      ++e  +I +yle+
  EGE24923.1 22 SHIVRLLLEEKHLNYETVFI-----GEERPEELIELNPYHTLPILVNR-DISLYEHNVIFEYLEE 80
                799*****************.....99*******************64.46999*********98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
                 SSSEEE CS
     GST_N_2  45 tVPvLw 50 
                  +P+Lw
  EGE24923.1 164 LLPLLW 169
                 456666 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.2e-06    0.0035       3      53 ..     127     177 ..     101     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.2e-06
                 HHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS CS
     GST_C_2   3 averaleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpg 53 
                 a ++a++ l  +l +++ + +++p++  d++++ D+ l p l+rl   g +
  EGE24923.1 127 AATAARKSLSDSLVTIAPLFGHKPYFMSDTFGWCDVLLLPLLWRLNKMGVH 177
                 5567889999999999999**************************988765 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.7e-06    0.0081      10      75 ..     114     179 ..     106     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.7e-06
                 HHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT CS
       GST_C  10 llfyvkaeekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg 75 
                 ++++ +++ ++ +++ +a++ +  +l  +   +  + y++ d +++ D++l+p+l++l++ g+ ++
  EGE24923.1 114 YTLLTHSDSFDIQAATAARKSLSDSLVTIAPLFGHKPYFMSDTFGWCDVLLLPLLWRLNKMGVHLP 179
                 5667788888888999999999999999999***************************99988765 PP

>> GST_C_5  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-05     0.074      44      74 ..     142     172 ..     108     178 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
                 HCCHTSSSSECCECC--HHHHHHHHHHHHHH CS
     GST_C_5  44 lakhqgeGPyfldkelsmadvavvPflvrlk 74 
                 +a   g+ Pyf+ +++  +dv ++P+l rl 
  EGE24923.1 142 IAPLFGHKPYFMSDTFGWCDVLLLPLLWRLN 172
                 34444899*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1537.22
//
Query:       EGE24924.1  [L=129]
Description: ClpXP protease specificity-enhancing factor [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-25   87.7   0.0    8.3e-25   87.5   0.0    1.0  1  SspB      Stringent starvation protein B


Domain annotation for each model (and alignments):
>> SspB  Stringent starvation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   4.6e-29   8.3e-25       2     122 ..       4     116 ..       3     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 4.6e-29
                 SHHHHHHHHHHHHHHHHCCCTT.-ET..EEEEEETTSTT-BS-HHHHGGGSBTTEEEEE...CCEEEEEE-SSEEEEEEEETTEEEEEEEEGGGEEEEE CS
        SspB   2 lrpyalRavvrwvldevaeene.lpehhFyitvdtdapgVkvperLreeypeemtIvLq...hafsdLevtedafevglrFggvpeklvvPfaavlafy 96 
                  rpy++Ra+++w+ d     n+ +p    y+++d+++++V  p     ey+++++ vL    +a+++L++ +da+++++rFggv++++ +P+aa++a+y
  EGE24924.1   4 KRPYIVRAFHEWIED-----NDfTP----YLMIDATHDDVVAP----LEYAQDGRLVLAasyQATHNLQIHNDAISFTARFGGVSSDIWIPMAALMAIY 89 
                 68*************.....*****....**************....**************************************************** PP

                 ETTT.TEEEE-.--BGGGCHT.TSXXS CS
        SspB  97 dpev.gfglqFeeaeeaeeeeeeeeae 122
                 ++e  ++g  F++ e a+++  +++++
  EGE24924.1  90 AKEDpKHGAFFDPGEYANHQSPKTDED 116
                 **9736778887777666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 947.88
//
Query:       EGE24925.1  [L=858]
Description: ATP-dependent chaperone ClpB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-59  200.6   0.0    7.2e-57  192.2   0.0    2.7  2  AAA_2            AAA domain (Cdc48 subfamily)
    5.8e-35  119.4  10.1    3.2e-34  117.0   8.7    2.9  2  AAA_lid_9        AAA lid domain
    3.2e-27   94.4   0.0    1.9e-26   91.9   0.0    2.5  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    3.8e-24   85.6   0.0    6.4e-12   46.0   0.0    3.1  2  AAA              ATPase family associated with various cellul
    2.4e-19   69.7   0.1    3.3e-14   53.1   0.0    3.3  2  AAA_5            AAA domain (dynein-related subfamily)
    6.5e-13   49.4   2.8    3.7e-05   24.2   0.2    4.6  2  AAA_16           AAA ATPase domain
    1.9e-11   43.9   0.9    9.4e-07   28.9   1.6    3.0  2  Clp_N            Clp amino terminal domain, pathogenicity isl
    2.4e-08   33.9   0.0    6.6e-05   22.7   0.0    3.3  3  Sigma54_activat  Sigma-54 interaction domain
    4.7e-08   33.4   0.8       0.06   13.6   0.1    4.9  4  AAA_22           AAA domain
    2.9e-06   27.3   0.0       0.71    9.9   0.0    4.3  4  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    6.7e-06   25.7   0.0      0.057   12.9   0.0    2.8  2  AAA_7            P-loop containing dynein motor region
    8.1e-06   25.7   0.1       0.22   11.3   0.0    3.2  3  IstB_IS21        IstB-like ATP binding protein
    1.4e-05   25.1   0.0       0.27   11.3   0.0    3.0  2  AAA_14           AAA domain
    1.5e-05   25.0   3.3          2    8.3   0.1    4.5  3  ATPase_2         ATPase domain predominantly from Archaea
    1.9e-05   24.2   0.0      0.016   14.6   0.0    3.4  2  TniB             Bacterial TniB protein
    3.6e-05   24.3  11.6       0.38   11.2   0.0    3.4  2  AAA_23           AAA domain
    7.3e-05   23.3   2.0       0.52   10.9   0.0    4.2  3  AAA_18           AAA domain
    0.00016   21.9   0.2          1    9.6   0.0    2.9  2  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0002   20.8   0.0        1.1    8.6   0.0    3.5  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00023   21.1   1.1       0.82    9.6   0.0    3.4  3  RsgA_GTPase      RsgA GTPase
    0.00044   19.5   0.2       0.34   10.0   0.2    3.1  2  DUF815           Protein of unknown function (DUF815)
    0.00049   19.9   0.5        3.8    7.2   0.0    4.0  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00058   19.8   0.9        1.8    8.4   0.0    3.8  4  Bac_DnaA         Bacterial dnaA  protein
    0.00061   19.7   0.0      0.081   12.8   0.0    3.0  2  NACHT            NACHT domain
    0.00065   19.5   0.0       0.42   10.3   0.0    3.1  2  AAA_24           AAA domain
    0.00066   20.0   0.2        1.6    9.2   0.0    3.1  2  RNA_helicase     RNA helicase
     0.0008   19.7   0.2        3.9    7.7   0.0    3.8  3  AAA_28           AAA domain
     0.0018   18.3   0.0        2.1    8.3   0.0    3.9  3  ResIII           Type III restriction enzyme, res subunit
     0.0022   17.7   0.0        1.9    8.3   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
     0.0063   17.0   2.0        1.3    9.6   0.0    3.5  2  ABC_tran         ABC transporter
     0.0078   15.3   0.0      0.062   12.3   0.0    2.5  3  T2SSE            Type II/IV secretion system protein
     0.0096   15.6   0.0       0.38   10.4   0.0    3.1  2  GntR             Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.011   15.5   0.0        1.4    8.7   0.0    2.9  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
      0.013   15.9   0.6        2.4    8.5   0.2    3.6  2  AAA_19           AAA domain
       0.03   14.2   0.1        1.6    8.6   0.0    3.1  2  AAA_3            ATPase family associated with various cellul
      0.034   13.9   0.0          2    8.1   0.0    2.8  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.035   14.2   1.3         29    4.7   0.0    4.0  4  DUF87            Helicase HerA, central domain
      0.041   13.5   0.1        5.1    6.7   0.0    3.0  2  SRP54            SRP54-type protein, GTPase domain
      0.064   13.4   0.0        8.9    6.5   0.0    2.9  2  AAA_33           AAA domain
      0.077   12.8   0.2         10    5.8   0.0    2.8  2  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.092   12.3   0.0       0.28   10.8   0.0    1.8  1  Y_phosphatase2   Tyrosine phosphatase family
       0.13   12.4   6.8       0.36   10.9   6.8    1.8  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
       0.21   11.7   0.9       0.88    9.7   0.0    2.6  1  CMD              Carboxymuconolactone decarboxylase family
       0.38   10.5   4.8          4    7.1   0.0    3.8  3  AAA_30           AAA domain
       0.59    9.9  13.3       0.42   10.4   9.9    2.5  2  Phage_GP20       Phage minor structural protein GP20
       0.72    9.0   2.0        1.4    8.1   2.0    1.3  1  TMPIT            TMPIT-like protein
        1.6    8.5  12.3       0.95    9.3   4.6    2.9  3  DUF724           Protein of unknown function (DUF724)
        5.6    6.4  11.0          2    7.9   4.0    2.5  2  Casc1            Cancer susceptibility candidate 1


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.043        16       6      77 ..     199     277 ..     194     294 .. 0.75
   2 !  192.2   0.0   1.9e-59   7.2e-57       2     171 .]     595     757 ..     594     757 .. 0.98

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.043
                 EEEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETG CS
       AAA_2   6 illlgptgvGktelakalaellfv......kkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEi 77 
                   l+g+ gvGkt + + la+ +         ++k++  +d+ +l+ + +     ++   ++  +  a+++G  i+++DE+
  EGE24925.1 199 PVLIGEAGVGKTAIVEGLAQRIVNgevpesLRNKSVLSLDMGSLIAGAKYHGEFEE-RLKAVLNELAKQDGniILFIDEL 277
                 57899********99999998855788988788999999***99995555444443.44445555566666678899997 PP

  == domain 2  score: 192.2 bits;  conditional E-value: 1.9e-59
                 ----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG--------- CS
       AAA_2   2 piisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessga 88 
                 p +s+l+lgptgvGktel+kala++lf ++e++++r+d+se++e    +h+vsrl+gappgyvg+eegG            +vl+DE++K+hp      
  EGE24925.1 595 PSGSFLFLGPTGVGKTELTKALANFLF-DSEDAMVRIDMSEYME----KHSVSRLVGAPPGYVGYEEGGvlteavrrkpysVVLFDEVEKAHP------ 682
                 789************************.****************....*********************************************...... PP

                 ----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  89 dvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                      +V+++LLq+l++g+ltd+qgr v++kn+++Imt+++gs+ i + +   ++ +e++k+ v+ +++ +++pE+++R++ei
  EGE24925.1 683 -----DVFNILLQVLDDGRLTDSQGRVVNFKNTVIIMTSNLGSHAIHEMT---DSPYEDIKTAVMTSVTGHFRPEFINRIDEI 757
                 .....*******************************************44...579*************************86 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   8.7   8.6e-37   3.2e-34       1     103 [.     339     441 ..     339     475 .. 0.96
   2 ?   -0.7   0.2       3.5   1.3e+03      69     101 ..     467     499 ..     445     502 .. 0.80

  Alignments for each domain:
  == domain 1  score: 117.0 bits;  conditional E-value: 8.6e-37
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 ++e+ti+iLrglke+ye hHgvki d+a+ aa+k+S+rYi+dr+lPdkAIDl+Deaa+r++++ +skpe+l+kl++++ +l+ + ea+++ee+   +++
  EGE24925.1 339 TVEDTIAILRGLKERYELHHGVKIMDSAIIAAAKMSHRYITDRQLPDKAIDLIDEAASRIKMELDSKPESLDKLDRRIIQLKMQLEAVKNEEDAGAKSQ 437
                 589*****************************************************************************************9877777 PP

   AAA_lid_9 100 lkel 103
                 +k+l
  EGE24925.1 438 VKSL 441
                 7654 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 3.5
   AAA_lid_9  69 eeleklekelaklekekealekeeekekaerlk 101
                 e+ ++l+++l++ +   e++ +e ++++a++l+
  EGE24925.1 467 EKSKQLQAKLDTARITLEKALREGDYARASQLQ 499
                 567889999999999999999999999888876 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0     5e-29   1.9e-26       1      80 [.     763     842 ..     763     843 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 5e-29
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvr 80 
                    L+ ++++ I++++l++l++rlker++ l+v+dea+++l++ gydp++GARpL+r+iq+eie+pla+++lsge++ gdt+ 
     EGE24925.1 763 LGADQMTGIAEIQLDRLRTRLKERELGLSVSDEAMNHLVSVGYDPVFGARPLKRAIQQEIENPLAQLLLSGEFTTGDTIF 842
                    7889*************************************************************************986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.7e-14   6.4e-12       2     126 ..     200     332 ..     199     336 .. 0.79
   2 !   36.0   0.0   2.2e-11   8.2e-09       2     111 ..     600     718 ..     599     730 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 1.7e-14
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G  G+GKT++++ +a+ +          + ++l++++ +l+   ky ge e++++++++e+ ++ +  ilfiDE++ ++++    +++ ++++ n 
  EGE24925.1 200 VLIGEAGVGKTAIVEGLAQRIvngevpeslrNKSVLSLDMGSLIagAKYHGEFEERLKAVLNELAKQDGNIILFIDELHTMVGAG---KTSGAMDAGNM 295
                 599*****************77666666555688********997778***************6665558***************...78888888999 PP

                 HHHHHHHTTTSSSTEEEEEEESS.....GGGSTHHHHSTTSSE CS
         AAA  89 Llteldgvkkkeskvivigatnr.....pdkldpallrgRfdr 126
                 L ++l + +       ++gat+      + + dpal  +Rf++
  EGE24925.1 296 LKPALARGEL-----RCVGATTLdeyrqYIEKDPALE-RRFQK 332
                 9998888876.....5777777655433333455555.56665 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 2.2e-11
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeer 84 
                 l+ Gp G+GKT l ka+a+ l   +  +++i++se ++k            yvg  e  +   ++ea + + p s++++DE+++ +++           
  EGE24925.1 600 LFLGPTGVGKTELTKALANFLfdsEDAMVRIDMSEYMEKhsvsrlvgappgYVGYEEGGV---LTEAVRRK-PySVVLFDEVEKAHPDV---------- 684
                 899*****************86556889*********999****9999999999988865...55554454.77***********9999.......... PP

                 HHHHHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  85 vvnqLlteldgvkkk........eskvivigatnr 111
                   n Ll++ld+ +           +++++i+++n 
  EGE24925.1 685 -FNILLQVLDDGRLTdsqgrvvnFKNTVIIMTSNL 718
                 .**********999989999999445888888886 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   0.00022     0.083       3      35 ..     200     233 ..     198     330 .. 0.80
   2 !   53.1   0.0   8.7e-17   3.3e-14       2     124 ..     599     720 ..     598     730 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00022
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrd 35 
                 +L+G+ G+gK+ ++e la+++ n ev + + +++
  EGE24925.1 200 VLIGEAGVGKTAIVEGLAQRIvNGEVPESLRNKS 233
                 79*******************9888766665555 PP

  == domain 2  score: 53.1 bits;  conditional E-value: 8.7e-17
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvd.splvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 +l +Gp+G+gK+el++ la +l   ++ ++ + +++++++  +   +   +g   +++ ++l++a+r    +++++DEve+a+++v+n+Ll++l++ rl
  EGE24925.1 599 FLFLGPTGVGKTELTKALANFLfdsEDAMVRIDMSEYMEKHSVSRLVGAPPGYVGYEEgGVLTEAVRrkPYSVVLFDEVEKAHPDVFNILLQVLDDGRL 697
                 789********************999999999**********999988776655555417889999976679*************************** PP

                 E..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  95 lleeggelvkaknddllerfrviatanpld 124
                   ++ g++v++kn      + +i+t+n  +
  EGE24925.1 698 T-DSQGRVVNFKN------TVIIMTSNLGS 720
                 9.99999999999......89****99776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   9.9e-08   3.7e-05       2      50 ..     177     222 ..     176     305 .. 0.79
   2 !   16.7   0.0     2e-05    0.0075       2      51 ..     568     623 ..     567     647 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 9.9e-08
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralek 50 
                 ++GR++e+++  ++l+r  ++ p   +l+Ge+GvGK+++v+ l++++  
  EGE24925.1 177 VIGRDDEIRRTVQVLSRRTKNNP---VLIGEAGVGKTAIVEGLAQRIVN 222
                 78******888888887776655...899************99987764 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2e-05
      AAA_16   2 lvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellralekd 51 
                 ++G  e ++++++a++r rsg +      ++ l+ G+ GvGK+ l ++l++ l ++
  EGE24925.1 568 VIGQNEAVAAVANAVRRSRSGLSdpnkpsGSFLFLGPTGVGKTELTKALANFLFDS 623
                 678889999*******999998888999********************99877665 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   1.6   2.5e-09   9.4e-07       1      52 [.      17      66 ..      17      67 .. 0.96
   2 !   11.2   0.0   0.00084      0.32       3      53 .]      94     142 ..      92     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2.5e-09
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52
                Aq+ ++ ++h  i + HLL A++++   +a +++++ G++l++l+++i+ ll
  EGE24925.1 17 AQQSSLGHHHTAIAPVHLLSAVADNH--TALSIIEASGANLARLQDEIKTLL 66
                899999********************..********************9887 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00084
                 HHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHHC CS
       Clp_N   3 elAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekllg 53 
                  +A ++g++++ +E L lAL+e++   + +++   Gv+ + l+   ++++g
  EGE24925.1  94 NYAAKAGDEFVPIEWLILALFENK--SLNKAFVSSGVTAQNLQTIMKNIRG 142
                 6899********************..9999999999999999988777775 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1      0.01       3.9       2      53 ..     178     227 ..     177     312 .. 0.67
   2 !   22.7   0.0   1.8e-07   6.6e-05      23     125 ..     597     700 ..     568     728 .. 0.76
   3 ?   -2.0   0.0       6.7   2.5e+03      15      42 ..     818     846 ..     812     853 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.01
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-E CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpf 53 
                      ig++++++++++ +++ +k + +v + Ge G+GK+ + + + ++  + e p 
       EGE24925.1 178 IGRDDEIRRTVQVLSRRTK-NNPV-LIGEAGVGKTAIVEGLAQRIVNGEVPE 227
                      6777777777777776543.3455.56*********9998877655554444 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.8e-07
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLl 114
                       s l +G +G+GK+ l +a+ +    +e  +v+++++++ e+   s+L G   G + G e+      ++++   +++++De+++  +++ + Ll
       EGE24925.1 597 GSFLFLGPTGVGKTELTKALANFLFDSEDAMVRIDMSEYMEKHSVSRLVGAPPG-YVGYEEGGVltEAVRRKPYSVVLFDEVEKAHPDVFNILL 689
                      67899*********************************************9998.8887765433344555567999***************** PP

                      HHHHHSEEESB CS
  Sigma54_activat 115 rvlqegeverv 125
                      +vl++g+++  
       EGE24925.1 690 QVLDDGRLTDS 700
                      *****988753 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 6.7
                      HHHHCTSS.S-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat  15 ikkvaktd.lsvlitGesGtGKellarai 42 
                      i++ ++++ +++l+ Ge  tG +++ + +
       EGE24925.1 818 IQQEIENPlAQLLLSGEFTTGDTIFVEWL 846
                      4555555558999********99998766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   0.00016      0.06       4      50 ..     195     242 ..     192     301 .. 0.71
   2 ?   -0.6   0.1         4   1.5e+03      37     112 ..     324     412 ..     280     424 .. 0.58
   3 !   10.2   0.0    0.0018      0.69       6      29 ..     597     620 ..     593     652 .. 0.80
   4 ?    2.2   0.0      0.52     2e+02      83     119 ..     661     698 ..     653     716 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00016
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpss 50 
                 t++  v++Ge+G+GKT  ++ l+++ ++ + +e  ++++v++ ++ s+
  EGE24925.1 195 TKNNPVLIGEAGVGKTAIVEGLAQRIVNGEVPESlRNKSVLSLDMGSL 242
                 778889******************998776666666666666555444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 4
      AAA_22  37 e...erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.........ielliiDEaqh.lr....s.eealeeL 112
                     +r + v+v+ p  ++   +lr l + ++l      +  + + +a+  a++  ++         +++ +iDEa   +     s +e l +L
  EGE24925.1 324 PaleRRFQKVLVDEPTVEDTIAILRGLKERYELH-----HGVKIMDSAIIAAAKMSHRyitdrqlpdKAIDLIDEAASrIKmeldSkPESLDKL 412
                 1544556666666666666666666666666642.....3445555666555555555555666677777777777775534333135555555 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0018
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 g+ +  G++G+GKT l + l++ l
  EGE24925.1 597 GSFLFLGPTGVGKTELTKALANFL 620
                 677889**************9987 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.52
      AAA_22  83 eqalraravielliiDEaqhlrseealeeLrsllnl...s 119
                 ++a+r++   ++++ DE+++  ++++++ L + l++    
  EGE24925.1 661 TEAVRRKPY-SVVLFDEVEKA-HPDVFNILLQVLDDgrlT 698
                 567777777.9**********.********9988865551 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0019      0.71       7      43 ..     184     220 ..     179     228 .. 0.78
   2 ?   -0.5   0.0       3.2   1.2e+03       6      34 ..     255     287 ..     251     296 .. 0.65
   3 !    8.5   0.0    0.0053         2      21      43 ..     592     620 ..     569     629 .. 0.68
   4 ?    2.6   0.0      0.35   1.3e+02      19      43 ..     826     850 ..     811     856 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   7 tealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 +++  + l + +++  +L G+ G+GKT++v gla+ +
  EGE24925.1 184 IRRTVQVLSRRTKNNPVLIGEAGVGKTAIVEGLAQRI 220
                 55566666666677789*****************987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHCHTEEEE....EEESTTSSHHH CS
        TsaE   6 etealgkklakalgdvil....LeGdLGaGKTt 34 
                  ++a+ ++lak+ g++il    L+  +GaGKT 
  EGE24925.1 255 RLKAVLNELAKQDGNIILfideLHTMVGAGKTS 287
                 556666666665555544112267778****96 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0053
                 E......EEEEESTTSSHHHHHHHHHHHT CS
        TsaE  21 v......ilLeGdLGaGKTtlvrglakal 43 
                        +l+ G+ G+GKT l+++la+ l
  EGE24925.1 592 PnkpsgsFLFLGPTGVGKTELTKALANFL 620
                 03344448899**************9865 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.35
                 TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakal 43 
                  + +lL+G+  +G T +v  l  ++
  EGE24925.1 826 LAQLLLSGEFTTGDTIFVEWLNDQF 850
                 33599************99887666 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0017      0.63      32      58 ..     195     221 ..     181     281 .. 0.69
   2 !   12.9   0.0   0.00015     0.057      35      81 ..     598     644 ..     589     648 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0017
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkld 58 
                  k++ +l+G++G+GKt+i++ l +++ 
  EGE24925.1 195 TKNNPVLIGEAGVGKTAIVEGLAQRIV 221
                 45667889***********99877664 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00015
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdi 81 
                 ++l+ GptG+GKt ++k l + l +++  ++ i +s +++ +++ ++
  EGE24925.1 598 SFLFLGPTGVGKTELTKALANFLFDSEDAMVRIDMSEYMEKHSVSRL 644
                 689*******************9999999********9999888776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0     0.001      0.39      45     105 ..     194     258 ..     181     280 .. 0.69
   2 ?   -1.9   0.1       6.3   2.3e+03       2      37 ..     470     505 ..     469     510 .. 0.83
   3 !   11.3   0.0   0.00058      0.22      49      71 ..     598     620 ..     594     643 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.001
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavr....aglsvlfvrvedLveelkrarrdgklaralkr 105
                 ++k+n vl+G +GvGK+ +   l+++ v+    + l+   v   d+ + ++ a+ +g+++++lk+
  EGE24925.1 194 RTKNNPVLIGEAGVGKTAIVEGLAQRIVNgevpESLRNKSVLSLDMGSLIAGAKYHGEFEERLKA 258
                 568999******************99987222222222233334555666666666666555554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 6.3
   IstB_IS21   2 rrletrlrlaklpaqktledidfraarsldkrkvke 37 
                 ++l+++l +a++  +k l + d++ a +l+  ++ +
  EGE24925.1 470 KQLQAKLDTARITLEKALREGDYARASQLQYGEIIA 505
                 688999999**************9998887666655 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00058
   IstB_IS21  49 nivllGpsGvGKshlaialgvea 71 
                 ++++lGp+GvGK+ l+ al+   
  EGE24925.1 598 SFLFLGPTGVGKTELTKALANFL 620
                 5789***************9755 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00073      0.27       6      78 ..     200     282 ..     196     329 .. 0.75
   2 !   10.5   0.0    0.0013      0.48       7      90 ..     601     695 ..     597     732 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00073
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd..kkladpekllelilek.lkeekktylflDEiqevpe 78 
                 v+ G   vGKT +++ l+++          +++s+l +++ +     k + ++e+ l+++l++ +k++++ +lf+DE + + +
  EGE24925.1 200 VLIGEAGVGKTAIVEGLAQRIVngevpesLRNKSVLSLDMGSLIAgaKYHGEFEERLKAVLNElAKQDGNIILFIDELHTMVG 282
                 5678889**********988889998866666666666655543343223355555666666636668999*******98854 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0013
      AAA_14   7 itGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe...........kllelilek..lke.....ekktylflDEiqev.pewekalksl 86 
                   G+  vGKT l k l++ l+ +++ ++ i++ +  +k +  ++           +      e   l +     +  +++++DE+ ++ p+++++l ++
  EGE24925.1 601 FLGPTGVGKTELTKALANFLFDSEDAMVRIDMSEYMEKHSV-SRlvgappgyvgyE------EGgvL-TeavrrKPYSVVLFDEVEKAhPDVFNILLQV 691
                 57999***********9877788888999999987775433.22233343333321......22221.13442244556******98768999999999 PP

      AAA_14  87 vdeg 90 
                 +d+g
  EGE24925.1 692 LDDG 695
                 9987 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0054         2       4      42 ..     180     218 ..     177     225 .. 0.89
   2 !    7.5   0.0     0.009       3.4     102     134 ..     252     282 ..     240     410 .. 0.82
   3 ?    6.2   0.0     0.022       8.3      26      63 ..     602     639 ..     593     694 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0054
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiie 42 
                 R+ e+++  ++l+r +++  ++ G  g+GKta++  +++
  EGE24925.1 180 RDDEIRRTVQVLSRRTKNNPVLIGEAGVGKTAIVEGLAQ 218
                 999*************9999999*********9987666 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.009
    ATPase_2 102 vfkaielllekikkkgkkiiiiiDelqklidlg 134
                  ++ ++++l+++ k+   ii++iDel  ++  g
  EGE24925.1 252 FEERLKAVLNELAKQDGNIILFIDELHTMV--G 282
                 56789999*******999********9998..3 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.022
    ATPase_2  26 YGpegsGKtaLlkeiienledkdkyviyyialreesis 63 
                  Gp g+GKt L k +++ l d+++  + ++  +  + +
  EGE24925.1 602 LGPTGVGKTELTKALANFLFDSEDAMVRIDMSEYMEKH 639
                 4**************99997777655544444333334 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.4e-05     0.016      36     183 ..     197     334 ..     181     338 .. 0.66
   2 ?    1.4   0.0       0.5   1.9e+02      32      54 ..     594     615 ..     563     629 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.4e-05
        TniB  36 pnlllvGdsnnGKtmivekFarlhppekd.edaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlr.llrelkvrvLiiDEihnll 132
                 +n +l+G+  +GKt+ive  a++  + +  e+ ++  vl +++               +l a +k + + ++  ++vl+ l ++ +  +L iDE+h ++
  EGE24925.1 197 NNPVLIGEAGVGKTAIVEGLAQRIVNGEVpESLRNKSVLSLDMG--------------SLIAGAKYHGEFEERLKAVLNeLAKQDGNIILFIDELHTMV 281
                 56666777777777777666655444432123334445555544..............444444444444444444444044445566899*****997 PP

        TniB 133 .agsarkqreflnalksLgnelkipivlvGt.eealralrtDpqlasRFepia 183
                  ag+ +    + n+lk    + ++  v++ t +e  + +++Dp l++RF+++ 
  EGE24925.1 282 gAGKTSGAMDAGNMLKPALARGELRCVGATTlDEYRQYIEKDPALERRFQKVL 334
                 5789999999******9999999999999983456679***********9875 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.5
        TniB  32 rkrmpnlllvGdsnnGKtmivek 54 
                 +    + l++G++ +GKt + + 
  EGE24925.1 594 KPS-GSFLFLGPTGVGKTELTKA 615
                 444.68899*********99876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  12.6     0.014       5.3      23     196 ..     200     487 ..     195     491 .. 0.70
   2 !   11.2   0.0     0.001      0.38      19      63 ..     596     641 ..     591     722 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.014
      AAA_23  23 lItGpNGaGKTTildAikl.aLygetprlsrks.......grgfeksdveiesegkvkay.veltfenkdgry.......................... 86 
                 +++G+ G GKT+i++ +   +  ge+p+  r++       g+ +  ++++ e+e+  ka+  el  ++ + +                           
  EGE24925.1 200 VLIGEAGVGKTAIVEGLAQrIVNGEVPESLRNKsvlsldmGSLIAGAKYHGEFEERLKAVlNELAKQDGNIILfidelhtmvgagktsgamdagnmlkp 298
                 6789*************9846799999998888899999988999999999999999999899988766666699999999999999999999999999 PP

      AAA_23  87 ............................................................trsiererelskkkgkttkkaklellei.....deleqf 120
                                                                              ++i ++   +  k++ ++ ++++l ++     de   +
  EGE24925.1 299 alargelrcvgattldeyrqyiekdpalerrfqkvlvdeptvedtiailrglkeryelhhGVKIMDSAIIAAAKMSHRYITDRQLPDKaidliDEAASR 397
                 999999999998888888888888888888877777777777776666666666666666444444444444444444444444444444334444444 PP

      AAA_23 121 isellgskki.......ilnlilflgqerfeefelkdkkerleelekeleeledekkllekl........eqekekekeleeleeeleeil 196
                 i+ +l+sk +       ++ ++ + + e  +++e++  k+++++le+++++++++ ++le++        e+ k+ +++l++ + +le++l
  EGE24925.1 398 IKMELDSKPEsldkldrRIIQLKM-QLEAVKNEEDAGAKSQVKSLEQQIDDAQKQYSELEEVwkaekvgvEKSKQLQAKLDTARITLEKAL 487
                 444444443333322112222222.222244556666777********************9997777777777777777777776666665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.001
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLygetprlsrks.grgfeksdv 63 
                 +g +l+ Gp+G GKT +  A+   L+     + r + ++ +ek++v
  EGE24925.1 596 SGSFLFLGPTGVGKTELTKALANFLFDSEDAMVRIDmSEYMEKHSV 641
                 589**********************998888888775556666666 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1     0.014       5.1       3      68 ..     201     267 ..     200     297 .. 0.67
   2 !   10.9   0.0    0.0014      0.52       3      22 ..     601     620 ..     600     665 .. 0.77
   3 ?    0.9   0.0       1.7   6.4e+02      18      86 ..     783     850 ..     773     857 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.014
      AAA_18   3 ltGtpGvGKttlakeLskrlgf.....gvnlrdvakenglllevdpealdeskrldedkldklldaleens 68 
                 l G +GvGKt + + L++r  +     + + ++v++ ++ +l        +++ + e++l+++l++l +++
  EGE24925.1 201 LIGEAGVGKTAIVEGLAQRIVNgevpeSLRNKSVLSLDMGSLIA----GAKYHGEFEERLKAVLNELAKQD 267
                 7899**************96334666544444444443322222....23466666666666666666654 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0014
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                   G+ GvGKt+l+k+L++ l
  EGE24925.1 601 FLGPTGVGKTELTKALANFL 620
                 57**************8754 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 1.7
      AAA_18  18 Lskrlgfgvnlrdvakenglllevdpe..aldeskrldedkldklldaleenssaleegknlvidghlael 86 
                 L++r ++g  ++d a ++  + ++dp   a + ++ ++++  + l ++l       + g+++ ++++  ++
  EGE24925.1 783 LKER-ELGLSVSDEAMNHLVSVGYDPVfgARPLKRAIQQEIENPLAQLLLSG--EFTTGDTIFVEWLNDQF 850
                 4444.34999999999999999999995555555555555555555554443..45777777777777666 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0038       1.4       3      24 ..     200     221 ..     199     238 .. 0.84
   2 !    9.6   0.0    0.0027         1       3      38 ..     600     634 ..     598     644 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0038
                 EEESSTTSSHHHHHHCHCT-CC CS
         Roc   3 vlvGdsgvGKtsllkrfvedkf 24 
                 vl+G++gvGKt +++ + ++ +
  EGE24925.1 200 VLIGEAGVGKTAIVEGLAQRIV 221
                 79***********998877655 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0027
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdflt 38 
                 +++G +gvGKt l k + +  f+++ ++++ +d+++
  EGE24925.1 600 LFLGPTGVGKTELTKALANFLFDSE-DAMVRIDMSE 634
                 789***************9998755.6777777755 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0      0.02       7.5      19      64 ..     193     238 ..     174     254 .. 0.77
   2 !    8.6   0.0     0.003       1.1      24      52 ..     598     626 ..     594     650 .. 0.72
   3 ?    1.6   0.0       0.4   1.5e+02     108     161 ..     670     721 ..     650     768 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.02
  Mg_chelatase  19 aaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasva 64 
                      + n +l+G +G GKt + + l++ + + +  e+l  +++ s+ 
    EGE24925.1 193 RRTKNNPVLIGEAGVGKTAIVEGLAQRIVNGEVPESLRNKSVLSLD 238
                   44567889*************9999988888888888888888765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.003
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpplsee 52 
                   ++l++Gp G GKt l k+l++ l + +++
    EGE24925.1 598 SFLFLGPTGVGKTELTKALANFLFDSEDA 626
                   589******************99876543 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.4
  Mg_chelatase 108 GvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpc 161
                    v+++DE+ + + +v+++L + l+dg++t s+  + v+f  ++ ++++ N+   
    EGE24925.1 670 SVVLFDEVEKAHPDVFNILLQVLDDGRLTDSQG-RVVNFK-NTVIIMTSNLGSH 721
                   68899*********************9986654.456665.4556666676555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0022      0.82      93     122 ..     190     219 ..     130     233 .. 0.79
   2 ?   -0.7   0.3       3.2   1.2e+03      55     100 ..     399     444 ..     366     450 .. 0.85
   3 !    7.9   0.0     0.007       2.6     101     121 ..     598     618 ..     542     639 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0022
                  HHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  93 lkellkdktsvlvGqSGvGKStLinallpe 122
                  + ++ +++  vl+G+ GvGK+++++ l+++
   EGE24925.1 190 VLSRRTKNNPVLIGEAGVGKTAIVEGLAQR 219
                  33334455679*************999876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 3.2
                  -GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  55 KiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdk 100
                  K++l ++ e+l++l  ++ +l +++ +v++++ +g+++  + l+++
   EGE24925.1 399 KMELDSKPESLDKLDRRIIQLKMQLEAVKNEEDAGAKSQVKSLEQQ 444
                  8999999999999999999999999999999988888777777665 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.007
                  EEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallp 121
                    +++G++GvGK+ L +al++
   EGE24925.1 598 SFLFLGPTGVGKTELTKALAN 618
                  5689***********999975 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.2   0.00091      0.34      41     116 ..     184     277 ..     168     280 .. 0.70
   2 ?    5.5   0.0     0.022       8.3      29      93 ..     567     636 ..     549     649 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00091
      DUF815  41 venteqfleglpannvLLwGarGtGKSslvkallneyaeeg..................LrlievekedlkelpklvellrerperfilfvDDL 116
                 ++ t q l+ ++ nn +L+G+ G+GK ++v  l +++ + +                  ++  + + e  + l++++++l++++ ++ilf+D L
  EGE24925.1 184 IRRTVQVLSRRTKNNPVLIGEAGVGKTAIVEGLAQRIVNGEvpeslrnksvlsldmgslIAGAKYHGEFEERLKAVLNELAKQDGNIILFIDEL 277
                 4668899999999********************9998876656666665555544322222222333334566667777777777777777765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.022
      DUF815  29 dLvgidkqkealventeqfleg.....lpannvLLwGarGtGKSslvkallneyaeegLrlievekedlk 93 
                 +++g ++  +a+ + +++  +g     +p+   L+ G  G+GK  l kal n + +++ +++ ++ ++  
  EGE24925.1 567 RVIGQNEAVAAVANAVRRSRSGlsdpnKPSGSFLFLGPTGVGKTELTKALANFLFDSEDAMVRIDMSEYM 636
                 555555555555555555555521122467789*******************999999888888877655 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.4     0.015       5.6      72      96 ..     253     280 ..     182     286 .. 0.65
   2 ?    7.2   0.0      0.01       3.8      10      56 ..     569     619 ..     560     639 .. 0.72
   3 ?   -1.5   0.0         5   1.9e+03      84     113 ..     668     697 ..     657     704 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.015
      RuvB_N  72 agdlaalltnleekd...vlfideihrl 96 
                 +  l a+l++l ++d   +lfide+h +
  EGE24925.1 253 EERLKAVLNELAKQDgniILFIDELHTM 280
                 3568999****99888889*******87 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.01
      RuvB_N  10 igqekvkeklkifieaakkr....eealdhvllyGpPGlGkttlakiiake 56 
                 igq++  + ++ +++ +++     +++    l+ Gp G+Gkt l+k +a+ 
  EGE24925.1 569 IGQNEAVAAVANAVRRSRSGlsdpNKPSGSFLFLGPTGVGKTELTKALANF 619
                 56666555555555555432111155666789*************999985 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 5
      RuvB_N  84 ekdvlfideihrlsraveevlysamedfrl 113
                 +  v++ de+ + ++ v ++l + ++d rl
  EGE24925.1 668 PYSVVLFDEVEKAHPDVFNILLQVLDDGRL 697
                 5678999****************9999776 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.048        18      32      60 ..     195     222 ..     177     229 .. 0.78
   2 ?   -2.4   0.0       9.6   3.6e+03     114     138 ..     251     275 ..     223     282 .. 0.72
   3 ?    1.6   0.3      0.57   2.1e+02     127     182 ..     392     448 ..     335     477 .. 0.76
   4 !    8.4   0.0    0.0048       1.8      29      64 ..     591     626 ..     561     644 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.048
                 T.S--EEEE-SSSSSHHHHHHHHHHHHHH CS
    Bac_DnaA  32 kkynPlfiygevGlGktHLlkaignevle 60 
                 +k nP++i ge G+Gkt +++ +++++++
  EGE24925.1 195 TKNNPVLI-GEAGVGKTAIVEGLAQRIVN 222
                 35699988.***********999998875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 9.6
                 HHHHHHHHHHHHHHTTT-EEEEEES CS
    Bac_DnaA 114 ktqeelfhtfnalleegkqvvlssD 138
                 + +e l  ++n+l +++ +++l  D
  EGE24925.1 251 EFEERLKAVLNELAKQDGNIILFID 275
                 5678888999999999999998777 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.57
                 HTTT-EEEEEESS-TTT-SS--HHHHH.HHHSSEEEE-----HHHHHHHHHHHHHHT CS
    Bac_DnaA 127 leegkqvvlssDrsPkeleeledrlrs.rfeaGlvvdieppdletrlailkkkieae 182
                  e++ ++ +  D +P++l++l+ r+   +++   v + e++  + +++ l+++i+ +
  EGE24925.1 392 DEAASRIKMELDSKPESLDKLDRRIIQlKMQLEAVKNEEDAGAKSQVKSLEQQIDDA 448
                 45678999999***********99864244544455555555666666666666654 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0048
                 STTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSS CS
    Bac_DnaA  29 apgkkynPlfiygevGlGktHLlkaignevlenape 64 
                  p+k    +++ g++G+Gkt L ka++n + +++ +
  EGE24925.1 591 DPNKPSGSFLFLGPTGVGKTELTKALANFLFDSEDA 626
                 356666678999***************998876544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00022     0.081       4      32 ..     200     228 ..     199     285 .. 0.86
   2 ?    3.2   0.0      0.19        73       5      24 ..     601     620 ..     598     644 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00022
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqg 32 
                 +l GeaG+GKT+ +++la+ +  g+ p+ 
  EGE24925.1 200 VLIGEAGVGKTAIVEGLAQRIVNGEVPES 228
                 689*****************999998875 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.19
                 EEC-TTTCHHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklalaw 24 
                   G+ G+GKT L + la  +
  EGE24925.1 601 FLGPTGVGKTELTKALANFL 620
                 68**********99998765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.031        11       3      23 ..     197     229 ..     195     341 .. 0.77
   2 !   10.3   0.0    0.0011      0.42       6      83 ..     600     686 ..     597     703 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.031
      AAA_24   3 lkiliyGpsgiGKTtlakel............g 23 
                 ++ +++G++g+GKT ++  l             
  EGE24925.1 197 NNPVLIGEAGVGKTAIVEGLaqrivngevpesL 229
                 56689*********9999884444444444443 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0011
      AAA_24   6 liyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtideleelcla 83 
                 l  Gp g+GKT l k l  ++l +d e+ + ++d  ++ + +s+  ++ +               a   ++y+++ +D ++++   +++
  EGE24925.1 600 LFLGPTGVGKTELTKAL-ANFL-FDSEDAMVRIDMSEYMEKHSVSRLVGAPPGYvgyeeggvlteAVRRKPYSVVLFDEVEKAHPDVFN 686
                 678**************.7766.599998999999999866666665555444488889999998888999999999999998776665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.017       6.4       3      24 ..     201     222 ..     200     244 .. 0.83
   2 !    9.2   0.0    0.0042       1.6       2      23 ..     600     621 ..     599     642 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.017
  RNA_helicase   3 lyGpsgeGKStlakeLakallk 24 
                   l G++g+GK+ +++ La+++ +
    EGE24925.1 201 LIGEAGVGKTAIVEGLAQRIVN 222
                   78***************99984 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0042
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   ++ Gp+g+GK+ l+k La+ l 
    EGE24925.1 600 LFLGPTGVGKTELTKALANFLF 621
                   589*************998776 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.019       7.3       3      35 ..     200     233 ..     198     288 .. 0.68
   2 ?   -0.1   0.1       2.7     1e+03      22      73 ..     386     436 ..     348     464 .. 0.69
   3 ?    7.7   0.0      0.01       3.9       3      21 ..     600     618 ..     598     641 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.019
      AAA_28   3 vitGgestGKTtlleaLaargyp.vvpEaareil 35 
                 v++G  + GKT ++e La+r ++  vpE+ r   
  EGE24925.1 200 VLIGEAGVGKTAIVEGLAQRIVNgEVPESLRNKS 233
                 899****************954436688877655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.7
      AAA_28  22 rgypvvpEaareileeklakgedalpwvedllafaervleeqleeeaaa.aan 73 
                 + +  + Eaa +i  e+  k e  l++  d+  ++ ++  e++++e++a a++
  EGE24925.1 386 KAIDLIDEAASRIKMELDSKPES-LDKL-DRRIIQLKMQLEAVKNEEDAgAKS 436
                 45556777777776666655554.7775.333344333333444555443444 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.01
      AAA_28   3 vitGgestGKTtlleaLaa 21 
                  ++G+ + GKT l++aLa+
  EGE24925.1 600 LFLGPTGVGKTELTKALAN 618
                 689**************96 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0       0.3   1.1e+02      12      48 ..     184     220 ..     151     226 .. 0.82
   2 ?    1.3   0.0      0.79   2.9e+02     124     146 ..     260     282 ..     248     301 .. 0.77
   3 !    8.3   0.0    0.0055       2.1       8      51 ..     571     623 ..     566     630 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.3
                 HHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH CS
      ResIII  12 ienlleklkskrdkrglikmaTGtGKTlvaaklierl 48 
                 i+++++ l+ + +++ ++  + G+GKT +   l++r+
  EGE24925.1 184 IRRTVQVLSRRTKNNPVLIGEAGVGKTAIVEGLAQRI 220
                 66777777766777888999********998887776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.79
                 ...HHHTTT-SEEEEETGGGTTS CS
      ResIII 124 eseellrdrfdviiiDEaHrlga 146
                  +e +++d + +++iDE H + +
  EGE24925.1 260 LNELAKQDGNIILFIDELHTMVG 282
                 56677888888999999998776 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0055
                 HHHHHHHHT...............TTSEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII   8 Qeeaienlleklks.........krdkrglikmaTGtGKTlvaaklierllkk 51 
                 Q ea+ ++++++           k    +l+  +TG+GKT +  +l+  l+ +
  EGE24925.1 571 QNEAVAAVANAVRRsrsglsdpnKPSGSFLFLGPTGVGKTELTKALANFLFDS 623
                 899999999888878888887744444999**********9998888777766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0      0.02       7.5      20      42 ..     194     216 ..     185     225 .. 0.79
   2 !    8.3   0.0     0.005       1.9      20      46 ..     594     620 ..     588     627 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.02
      AAA_29  20 dlkgatlltGpsGsGKSTllDAi 42 
                 ++k++ +l+G+ G+GK++++  +
  EGE24925.1 194 RTKNNPVLIGEAGVGKTAIVEGL 216
                 4556889************9766 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.005
      AAA_29  20 dlkgatlltGpsGsGKSTllDAiqalL 46 
                 +++g++l+ Gp+G+GK+ l  A++  L
  EGE24925.1 594 KPSGSFLFLGPTGVGKTELTKALANFL 620
                 57889************9998888766 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0       0.1        38      15      35 ..     200     220 ..     191     271 .. 0.83
   2 !    9.6   0.0    0.0034       1.3      15      42 ..     600     627 ..     593     650 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.1
                 EEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagll 35 
                 +++Ge G GK+ +++ la+  
  EGE24925.1 200 VLIGEAGVGKTAIVEGLAQRI 220
                 79************9998875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0034
                 EEEESTTSSHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteGei 42 
                  ++G++G GK+ L k+la+ l + e+ +
  EGE24925.1 600 LFLGPTGVGKTELTKALANFLFDSEDAM 627
                 689***************9877655543 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.4   2.4e+03     117     153 ..     186     220 ..     140     225 .. 0.62
   2 ?   -2.3   0.0       4.8   1.8e+03      94     132 ..     228     270 ..     184     273 .. 0.55
   3 !   12.3   0.0   0.00017     0.062     122     173 ..     589     639 ..     552     676 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.4
       T2SSE 117 kiaevlrkavrerglilvsGgTgsGKttllyallkei 153
                 +  +vl++   ++ + ++ G  g GKt ++  l + i
  EGE24925.1 186 RTVQVLSRR--TKNNPVLIGEAGVGKTAIVEGLAQRI 220
                 333344433..56777888999999999887666655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.8
       T2SSE  94 viRkksakeltlddlgaeealk....ekiaevlrkavrergli 132
                 ++R+ks+ +l++  l+a ++ +    e++++vl++  ++ g+i
  EGE24925.1 228 SLRNKSVLSLDMGSLIAGAKYHgefeERLKAVLNELAKQDGNI 270
                 4555555555555554433333111155555555555555555 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00017
       T2SSE 122 lrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleg 173
                 l+ + +  g++l+ G+Tg GKt l+ al +++ +s++ +v + D  E+  ++
  EGE24925.1 589 LSDPNKPSGSFLFLGPTGVGKTELTKALANFLFDSEDAMVRI-DMSEYMEKH 639
                 5555566899************************98888888.777776555 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.9   3.4e+02      28      46 ..     470     488 ..     468     489 .. 0.91
   2 !   10.4   0.0     0.001      0.38       2      36 ..     819     852 ..     818     854 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.9
                 HHHHHHHTS-HHHHHHHHH CS
        GntR  28 reLaaefgVsrttvReALr 46 
                 ++L+a++++ r t+ +ALr
  EGE24925.1 470 KQLQAKLDTARITLEKALR 488
                 6899**************8 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS CS
        GntR   2 yeqvyerLredIlsgelrpGdkLPsereLaaefgV 36 
                 +++++  L +++lsge++ Gd++  +++L ++f +
  EGE24925.1 819 QQEIENPLAQLLLSGEFTTGDTI-FVEWLNDQFTF 852
                 5789999****************.********976 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0037       1.4      16      49 ..     593     626 ..     583     640 .. 0.88
   2 ?    3.2   0.0      0.18        67     101     128 ..     666     693 ..     658     698 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0037
  DNA_pol3_delta2  16 grlahayLfeGdegigkkelalnlakallceekn 49 
                      ++ + ++Lf G++g+gk el+++la+ l+ +e+ 
       EGE24925.1 593 NKPSGSFLFLGPTGVGKTELTKALANFLFDSEDA 626
                      677889**********************998765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.18
  DNA_pol3_delta2 101 eskkkiiiiedaekmtksAaNalLktlE 128
                         + +++ +++ek ++   N+lL++l 
       EGE24925.1 666 RKPYSVVLFDEVEKAHPDVFNILLQVLD 693
                      456899*******************997 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0063       2.4      10      73 ..     196     278 ..     187     355 .. 0.57
   2 ?    3.2   0.0      0.28   1.1e+02      10      38 ..     596     624 ..     591     636 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0063
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkp.........eeillvaftgrAakelrerlaalgae...........atTiH 73 
                 +++ ++++ +G GKT ++++  + +v+ + v+           ++  +    +   e +erl+a++ e           ++ +H
  EGE24925.1 196 KNNPVLIGEAGVGKTAIVEGLAQRIVNGE-VPEslrnksvlsLDMGSLIAGAKYHGEFEERLKAVLNElakqdgniilfIDELH 278
                 5667899***********99998887766.332355544444222222333344455555555555555555666666644444 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.28
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelg 38 
                 ++ +l +++ G GKT+++k+  + l + +
  EGE24925.1 596 SGSFLFLGPTGVGKTELTKALANFLFDSE 624
                 56678899**********99988877665 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.1     4e+02       4      23 ..     201     220 ..     199     229 .. 0.86
   2 ?    8.6   0.0    0.0042       1.6       8     111 ..     605     717 ..     599     726 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.1
       AAA_3   4 legvPGlaktllvkalakal 23 
                 l g  G++kt +v+ la+ +
  EGE24925.1 201 LIGEAGVGKTAIVEGLAQRI 220
                 56788************976 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0042
       AAA_3   8 PGlaktllvkalakal...dlefkriqftpdllPsdilGtevfeekekefefkkGpvfan........llladeinrappktqsalleameerqvtveg 95 
                  G++kt l kala+ l   +  + ri +   +    +  ++++ +    + +++G v+++        ++l de+++a p +   ll+++++ ++t ++
  EGE24925.1 605 TGVGKTELTKALANFLfdsEDAMVRIDMSEYMEKHSV--SRLVGAPPGYVGYEEGGVLTEavrrkpysVVLFDEVEKAHPDVFNILLQVLDDGRLTDSQ 701
                 5666666666666655322234555555444433222..2233333333444444444322222222299************************99766 PP

       AAA_3  96 ethklpepflvlatqn 111
                  +    ++ +++ t n
  EGE24925.1 702 GRVVNFKNTVIIMTSN 717
                 5544444445555555 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.31   1.2e+02       5      23 ..     200     218 ..     196     234 .. 0.85
   2 ?    8.1   0.0    0.0054         2       4      23 ..     599     618 ..     596     637 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.31
   PduV-EutP   5 lliGkvgsGKttLtqalkg 23 
                 +liG+ g+GKt++ + l +
  EGE24925.1 200 VLIGEAGVGKTAIVEGLAQ 218
                 79*********99887766 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0054
   PduV-EutP   4 illiGkvgsGKttLtqalkg 23 
                  l++G++g+GKt Lt+al +
  EGE24925.1 599 FLFLGPTGVGKTELTKALAN 618
                 589**************987 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.077        29      29      60 ..     202     239 ..     200     272 .. 0.87
   2 ?   -0.8   1.0       3.6   1.4e+03     112     126 ..     446     460 ..     365     537 .. 0.60
   3 ?    4.6   0.0     0.081        30      26      49 ..     599     622 ..     591     639 .. 0.81
   4 ?   -2.2   0.0       9.5   3.6e+03     121     182 ..     776     836 ..     754     848 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.077
       DUF87  29 lgsTGsGKSntvavLleelle......kkgatililDp 60 
                 +g++G+GK+  v  L +++++       ++ ++l lD+
  EGE24925.1 202 IGEAGVGKTAIVEGLAQRIVNgevpesLRNKSVLSLDM 239
                 799*****************998888777778888886 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.6
       DUF87 112 paaavqrsvleeald 126
                 ++a++q+s lee+++
  EGE24925.1 446 DDAQKQYSELEEVWK 460
                 222333333333333 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.081
       DUF87  26 lAilgsTGsGKSntvavLleelle 49 
                 ++ lg TG+GK+ +++ L + l  
  EGE24925.1 599 FLFLGPTGVGKTELTKALANFLFD 622
                 6779**************998874 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 9.5
       DUF87 121 leealdqakakeekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggsf 182
                 l+++ +++k ++e +   sde +++l +  ++ + ++r lk+ ++++++++l +ll++g++ 
  EGE24925.1 776 LDRLRTRLK-ERELGLSVSDEAMNHLVSVGYDPVFGARPLKRAIQQEIENPLAQLLLSGEFT 836
                 455555565.4556666667777777777777777899999999999999999999998876 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.14        51       5      26 ..     200     221 ..     196     229 .. 0.87
   2 ?    6.7   0.0     0.014       5.1       4      28 ..     599     623 ..     596     632 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.14
                 EEEESTTSSHHHHHHHHHHHHH CS
       SRP54   5 llvGlqGaGKTttlaKLaallk 26 
                 +l+G  G+GKT  +  La+++ 
  EGE24925.1 200 VLIGEAGVGKTAIVEGLAQRIV 221
                 799**************99876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.014
                 EEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54   4 illvGlqGaGKTttlaKLaallkke 28 
                 +l++G++G+GKT  +  La+ l ++
  EGE24925.1 599 FLFLGPTGVGKTELTKALANFLFDS 623
                 799****************988665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.19        70       4      22 ..     201     219 ..     200     271 .. 0.89
   2 ?    6.5   0.0     0.024       8.9       3      36 ..     600     638 ..     599     664 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.19
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G +G+GK+  +e+l+++
  EGE24925.1 201 LIGEAGVGKTAIVEGLAQR 219
                 79**************975 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.024
      AAA_33   3 llvGlpGsGKstlaerllkklg.....avllssdtlrrr 36 
                 l+ G+ G+GK+ l + l++ l      +v+++  +++++
  EGE24925.1 600 LFLGPTGVGKTELTKALANFLFdsedaMVRIDMSEYMEK 638
                 799*************98766666667777776666655 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.11        40       2      20 ..     202     220 ..     201     240 .. 0.87
   2 ?    5.8   0.0     0.027        10       2      25 ..     602     625 ..     601     637 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.11
  ATP_bind_1   2 vGpaGsGKttfvgalseil 20 
                 +G aG+GKt +v+ l++ +
  EGE24925.1 202 IGEAGVGKTAIVEGLAQRI 220
                 8************998865 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.027
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgr 25 
                 +Gp G+GKt +++al+++l +++ 
  EGE24925.1 602 LGPTGVGKTELTKALANFLFDSED 625
                 7****************9988744 PP

>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00075      0.28      41     112 ..     147     217 ..     125     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00075
                     SS---HHHHHHHHHCT-EEEE-------GGG----HHHHHHHHHHHH-.GGG-SEEEE-SSSSSHHHHHHHHH CS
  Y_phosphatase2  41 peeesqdelqfleeekiklyhiaiesnkeelveiksdllkkalkllln.kenypvllhckrGkhrtglvigcl 112
                     ++++s+++ q l++  i+l + a+ ++ +  v   +d++++++++l    +n pvl+    G  +t++v g  
      EGE24925.1 147 TNQNSEQNRQALDKYTINLTERAMAGKLD-PVIGRDDEIRRTVQVLSRrTKNNPVLIGE-AGVGKTAIVEGLA 217
                     456788899999*****************.88899***********8625788999876.9999999997765 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   6.8   0.00098      0.36      89     177 ..     386     478 ..     353     482 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00098
     UPF0242  89 ealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae....dfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqieqLes 177
                 +a+    e   + k eld+k e l +l ++  qL+++lea+++      + + + le+q++  q++ +e++e  +  +  +ek ++  ++L++
  EGE24925.1 386 KAIDLIDEAASRIKMELDSKPESLDKLDRRIIQLKMQLEAVKNeedaGAKSQVKSLEQQIDDAQKQYSELEEVWKAEKVGVEKSKQLQAKLDT 478
                 466666778889999*************************9985555567788999***************9999999999998887777775 PP

>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0023      0.88      27      67 ..     502     541 ..     485     545 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHH CS
         CMD  27 eLialavsaangceyCvdaHtraAleaGvteeeiaevlaqa 67 
                 e+ial    a  + + +  Ht ++l++ vt++eiaev+ +a
  EGE24925.1 502 EIIALEKQLAEEQTD-EPEHTPKLLRNKVTDNEIAEVVSHA 541
                 555555556666666.677*******************998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.011         4      20      40 ..     198     218 ..     184     246 .. 0.83
   2 ?   -1.8   1.3       5.8   2.2e+03     111     111 ..     415     415 ..     258     499 .. 0.61
   3 ?    2.7   0.0      0.23        88      23      44 ..     601     622 ..     594     698 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.011
      AAA_30  20 vavltGpAGtGKttalkalre 40 
                   vl G AG GKt ++++l++
  EGE24925.1 198 NPVLIGEAGVGKTAIVEGLAQ 218
                 4689*************9976 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.8
      AAA_30 111 a 111
                 +
  EGE24925.1 415 R 415
                 1 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.23
      AAA_30  23 ltGpAGtGKttalkalreawea 44 
                   Gp G GKt + kal++ + +
  EGE24925.1 601 FLGPTGVGKTELTKALANFLFD 622
                 679**********999887654 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       2.9   1.1e+03      20      60 ..     388     425 ..     367     432 .. 0.51
   2 ?   10.4   9.9    0.0011      0.42      14      84 ..     425     495 ..     407     513 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.9
  Phage_GP20  20 ldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqiee 60 
                 +d ++e+   +k +l+ + ++L++L        +L+ q+e 
  EGE24925.1 388 IDLIDEAASRIKMELDSKPESLDKLDRR---IIQLKMQLEA 425
                 4455555555555555555555555433...3333333333 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0011
  Phage_GP20  14 ditkakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkldna 84 
                  + +++ + +++++++l++q++d++kq ++L+++ k  +   ++ ++lqak+++a  + e+ +++ +   a
  EGE24925.1 425 AVKNEEDAGAKSQVKSLEQQIDDAQKQYSELEEVWKAEKVGVEKSKQLQAKLDTARITLEKALREGDYARA 495
                 56666677899***********************99999999******************99988666555 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.0    0.0036       1.4      23      90 ..     393     460 ..     378     467 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0036
       TMPIT  23 qkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesllp 90 
                 +   +++   ++  ++++k  +r+ +lk +l+ +k++ ++  +++v++l++++++++k+ +e+e++  
  EGE24925.1 393 EAASRIKMELDSKPESLDKLDRRIIQLKMQLEAVKNEEDAGAKSQVKSLEQQIDDAQKQYSELEEVWK 460
                 55566666777778899999*****************99**********************9998765 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.18        66      71     113 ..      39      81 ..      32     162 .. 0.70
   2 ?    9.3   4.6    0.0025      0.95     124     178 ..     401     456 ..     381     464 .. 0.71
   3 ?   -1.5   0.2       5.2   1.9e+03     109     172 ..     478     536 ..     455     544 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.18
      DUF724  71 eslkeslaeLekhGFdVkalqsrlnkLlslkdeqtklleerkk 113
                  +  + l+ +e+ G +   lq+ +++Lls +   ++   + + 
  EGE24925.1  39 ADNHTALSIIEASGANLARLQDEIKTLLSYQAVINQPTGQVNL 81 
                 5667889999*******************99988776666554 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0025
      DUF724 124 ekrkleeeidelekkilelerqlallkekkea.adkeiarlkseaekleeeledve 178
                 e  +  e++d+l+++i++l++ql+++k++++a a++++++l+++ +++++++++ e
  EGE24925.1 401 ELDSKPESLDKLDRRIIQLKMQLEAVKNEEDAgAKSQVKSLEQQIDDAQKQYSELE 456
                 4444457899*************999954443155666667777777776666655 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 5.2
      DUF724 109 eerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaeklee 172
                 ++r  lek ++e +++++      +    +i+ le+qla  ++++ ++  ++ r k+  +++ e
  EGE24925.1 478 TARITLEKALREGDYARA-----SQLQYGEIIALEKQLAEEQTDEPEHTPKLLRNKVTDNEIAE 536
                 333334444433333332.....12233456666666666665555555555555555555444 PP

>> Casc1  Cancer susceptibility candidate 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.0    0.0054         2      40     113 ..     387     460 ..     370     464 .. 0.86
   2 ?    2.5   0.0      0.23        86     168     203 ..     668     705 ..     663     730 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0054
       Casc1  40 ivDiedslireWllqldieneiifsletklvryelyiskkeeeeakaargyvtdekkekkakkskkleikkpik 113
                   D++d   +   ++ld + e +++l+ +++++++ ++  ++ee ++a++ v+  +++ ++ ++++ e+++  k
  EGE24925.1 387 AIDLIDEAASRIKMELDSKPESLDKLDRRIIQLKMQLEAVKNEEDAGAKSQVKSLEQQIDDAQKQYSELEEVWK 460
                 467777777778899***********************889999************************999755 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.23
       Casc1 168 lyslsrvrknrlasyekrnitLh..eDgrilensedvr 203
                  ys++ ++  ++a+ + +ni+L+  +Dgr++  + +v+
  EGE24925.1 668 PYSVVLFDEVEKAHPDVFNILLQvlDDGRLTDSQGRVV 705
                 589999999999999*****997668*****9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1610  (0.0897987); expected 358.6 (0.02)
Passed bias filter:                      843  (0.0470188); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              48  [number of targets reported over threshold]
# CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.47
# Mc/sec: 5436.99
//
Query:       EGE24926.1  [L=264]
Description: ABC transporter ATPase subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-27   95.5   0.2    5.8e-27   94.9   0.2    1.3  1  ABC_tran     ABC transporter
    2.5e-09   37.4   0.6     0.0016   18.3   0.1    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    2.9e-09   36.7   0.2    9.8e-08   31.7   0.2    2.2  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00081   19.5   0.5     0.0012   18.9   0.5    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0011   18.8   0.1     0.0029   17.4   0.0    1.7  2  AAA_15       AAA ATPase domain
     0.0011   19.0   0.3     0.0016   18.5   0.3    1.4  1  Dynamin_N    Dynamin family
     0.0012   18.6   1.9     0.0012   18.5   0.4    1.9  2  AAA_29       P-loop containing region of AAA domain
     0.0019   18.1   1.3     0.0022   17.9   0.1    1.7  2  RsgA_GTPase  RsgA GTPase
     0.0021   18.5   0.2      0.017   15.5   0.1    2.1  2  AAA          ATPase family associated with various cellular a
     0.0031   18.0   0.0     0.0044   17.5   0.0    1.4  1  AAA_23       AAA domain
     0.0052   16.4   0.1      0.013   15.1   0.1    1.6  1  AAA_27       AAA domain
  ------ inclusion threshold ------
      0.011   14.5   0.7       0.87    8.3   0.0    2.5  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.042   13.1   0.0       0.11   11.7   0.0    1.6  2  DUF2813      Protein of unknown function (DUF2813)
      0.074   12.1   0.1       0.12   11.4   0.1    1.3  1  IIGP         Interferon-inducible GTPase (IIGP)
      0.086   12.5   3.1       0.38   10.4   3.2    2.2  1  AAA_30       AAA domain
        0.1   12.9   0.4        1.6    9.1   0.4    2.4  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.11   12.6   0.0        7.3    6.6   0.0    2.2  2  AAA_14       AAA domain
       0.12   11.6   0.0       0.23   10.7   0.0    1.4  1  Zeta_toxin   Zeta toxin
       0.13   12.2   0.4          1    9.3   0.0    2.1  2  NACHT        NACHT domain
       0.14   11.2   0.1       0.88    8.6   0.1    1.9  2  DUF2625      Protein of unknown function DUF2625


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.2   6.5e-30   5.8e-27       1     137 []      22     177 ..      22     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 6.5e-30
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx.................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren.................. 79 
                 l+ +sl++  ge v ++G nGaGKSt+l++++g ++ ++G+i+++g+d+++ ++++  k+++ ++q+  +   + lt++en                  
  EGE24926.1  22 LRGLSLSIADGEFVTVIGTNGAGKSTFLNAISGAVRVDSGSIKINGQDVTRLKTHQRAKQVARVFQDpmAGTCEALTIEENmalaykrggmrglagaln 120
                 6789***************************************************************88889999**********99999999999865 PP

                 HHHTC.HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdee.iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++e + + ls l+l    ++++++++  LSgGq+q v+l +a l+ +k+lllDE ta
  EGE24926.1 121 HKNRElFREKLSILKLG--LENRLTDRMGLLSGGQRQAVSLLMASLQPSKILLLDEHTA 177
                 33333434444433333..355555777****************************986 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.8e-06    0.0016       2      27 ..      35      60 ..      34      82 .. 0.77
   2 !   17.7   0.0   2.7e-06    0.0024     231     298 ..     143     208 ..      98     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldr 27
                  +iG Ng+GKS++L a++++ r+d+
  EGE24926.1 35 VTVIGTNGAGKSTFLNAISGAVRVDS 60
                679***************99976533 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 2.7e-06
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS 298
                    +  lS G++++  ll a l+   ++++ll+DE  + L+Pk  + +l+l  k+ s+++   +++THS
  EGE24926.1 143 TDRMGLLSGGQRQAVSLLMASLQ---PSKILLLDEHTAALDPKTAAFVLDLTdKIVSEGRLTTMMVTHS 208
                 4567899*******555555554...449***********************999999**********9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.2   1.1e-10   9.8e-08      24     190 ..      32     198 ..      26     230 .. 0.61

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.1e-10
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE...SSSSSSCEEEEEEEETTSEEEEEETTEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk...lkiekeevsisrrvkrkgeseykingkevt 119
                  +f  ++G NG+GKs +l+Ai+     +s  +++ +  +d+   + ++++ + a+   +f+++ +    + + +e++ +  +         ++n k+ +
  EGE24926.1  32 GEFVTVIGTNGAGKSTFLNAISGAVRVDSG-SIKIN-GQDVTRLKTHQRAKQVAR---VFQDPMAGtceALTIEENMALAYKRGGMRGLAGALNHKNRE 125
                 57999****************888777665.55543.344444433344444454...56555554232233333344443333333345666766665 PP

                 HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTS CS
                 xxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 120 kkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskna 190
                     +  + + g++        lLSgG+++  a++Ll+A  + +p+ + llDe  aaLD k  + v +l ++  ++ 
  EGE24926.1 126 LFREKLSILKLGLENRltdrmgLLSGGQRQ--AVSLLMA--SLQPSKILLLDEHTAALDPKTAAFVLDLTDKIVSEG 198
                 52222222233333336666669******7..7788876..678*****************9998888766555443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.5   1.3e-06    0.0012       2      42 ..      35      76 ..      34     212 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.3e-06
                EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvk 42
                v ++G   +GKSt++na++g+ ++  ++++   +d+++ + +
  EGE24926.1 35 VTVIGTNGAGKSTFLNAISGAvRVDSGSIKINGQDVTRLKTH 76
                789*****************8766666666544444444333 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.2e-06    0.0029      24      44 ..      32      53 ..      21      83 .. 0.77
   2 ?   -1.4   0.0       1.7   1.5e+03     322     365 ..     165     208 ..     152     210 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.2e-06
      AAA_15 24 e.ltvliGkNnsGKSsileald 44
                  + ++iG+N++GKS++l+a+ 
  EGE24926.1 32 GeFVTVIGTNGAGKSTFLNAIS 53
                33999***************94 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 ++++ill++E  a L p+    + +l  +++++++  +++ THS
  EGE24926.1 165 QPSKILLLDEHTAALDPKTAAFVLDLTDKIVSEGRLTTMMVTHS 208
                 46789999999999999999999999999999999999*****9 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.3   1.8e-06    0.0016       1      29 [.      35      63 ..      35     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.8e-06
                EEEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpn 29
                ++v+G+  +GKS++lna+ g+    +g++
  EGE24926.1 35 VTVIGTNGAGKSTFLNAISGAVRVDSGSI 63
                78******************865555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.4   1.4e-06    0.0012      17      43 ..      27      53 ..      21      67 .. 0.79
   2 ?   -2.5   0.1       4.8   4.3e+03      38      52 ..     171     184 ..     168     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.4e-06
      AAA_29 17 ieidlkg.atlltGpsGsGKSTllDAiq 43
                ++i   g ++ ++G++G+GKST+l Ai+
  EGE24926.1 27 LSIAD-GeFVTVIGTNGAGKSTFLNAIS 53
                55553.448999**************97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.8
      AAA_29  38 llDAiqalLvpakkv 52 
                 llD ++a L p++ +
  EGE24926.1 171 LLDEHTAALDPKT-A 184
                 7888999998887.4 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.5e-06    0.0022      97     132 ..      29      65 ..      15      86 .. 0.80
   2 ?   -2.8   0.2       5.7   5.1e+03     119     147 ..     194     223 ..     189     233 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.5e-06
                  CTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpelelktgevse 132
                  ++d ++++++G  G+GKSt++na+ +  ++  g+++ 
   EGE24926.1  29 IADgEFVTVIGTNGAGKSTFLNAISGAVRVDSGSIKI 65 
                  55559999******************98888877765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.7
                  HCTT-----S---------.-----SEEEE CS
  RsgA_GTPase 119 llpelelktgevseklgrG.khTTtavell 147
                  +++e +l t  v +++++   h T++v l+
   EGE24926.1 194 IVSEGRLTTMMVTHSMQQAlTHGTRTVMLH 223
                  555555555555554444324666665554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.9e-05     0.017       2      74 ..      36     109 ..      35     134 .. 0.83
   2 ?    0.8   0.0      0.69   6.2e+02      56      71 ..     163     179 ..     112     215 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.9e-05
                 EEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA   2 llyGppGtGKTllakavakelg..vefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr 74 
                  ++G+ G GK+++ +a+   +   +  ++i+g +++     +++k+++ +f++  +   +  l i+E  ala +r
  EGE24926.1  36 TVIGTNGAGKSTFLNAISGAVRvdSGSIKINGQDVTRLKTHQRAKQVARVFQDPMAGT-CEALTIEENMALAYKR 109
                 689*****************8622568*********9999***********9965554.7888888888887777 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.69
                 TSTS.EEEEEETGGGHH CS
         AAA  56 kakp.silfiDEidala 71 
                 + +p +il++DE  a  
  EGE24926.1 163 SLQPsKILLLDEHTAAL 179
                 22466899999976654 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.9e-06    0.0044      23      42 ..      36      55 ..      22     141 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.9e-06
      AAA_23 23 lItGpNGaGKTTildAikla 42
                 ++G NGaGK+T+l+Ai  a
  EGE24926.1 36 TVIGTNGAGKSTFLNAISGA 55
                568**************877 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.4e-05     0.013      19      47 ..      25      53 ..      21      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-05
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrAis 47
                l++s ++ ++  ++G+N AGKst l+Ais
  EGE24926.1 25 LSLSIADGEFVTVIGTNGAGKSTFLNAIS 53
                6777778999*****************97 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00098      0.87     240     268 ..      27      56 ..       6      59 .. 0.79
   2 ?    4.0   0.1      0.02        18     324     353 ..     150     179 ..     147     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00098
                 EEE-SS.EEEEEE-TTSSHHHHHHHHHHCC CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAlekGv 268
                 + i  G  ++++G++  GKsT L+A++  v
  EGE24926.1  27 LSIADGeFVTVIGTNGAGKSTFLNAISGAV 56 
                 456778777789**************8766 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.02
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAt 353
                 SG   qA+++  a    +k+lL+DE t+A 
  EGE24926.1 150 SGGQRQAVSLLMASLQPSKILLLDEHTAAL 179
                 899999999999999999*******99994 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.11      14      75 ..      25      83 ..      17      94 .. 0.80
   2 ?   -2.1   0.0         2   1.8e+03     287     312 ..     170     195 ..     164     254 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
     DUF2813 14 inrLSlsleentvLiGENaWGKSSLldALslilnvekelyqFtlkDFhvdeseeeeqekhlq 75
                +  LS+   e  ++iG N  GKS  l+A+s ++ v++   + + +D  +   ++++++k++ 
  EGE24926.1 25 L-SLSIADGEFVTVIGTNGAGKSTFLNAISGAVRVDSGSIKINGQDVTR--LKTHQRAKQVA 83
                3.36666667889*************************99999999874..45555555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
     DUF2813 287 lllEdpearLHPtmlaiaWellellP 312
                 lll++  a L P++ a + +l + + 
  EGE24926.1 170 LLLDEHTAALDPKTAAFVLDLTDKIV 195
                 55555555555555555544444332 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00013      0.12      38      78 ..      35      75 ..      30      94 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
                EEEEESTTSSHHHHHHHHTT--TTSTTS--SSCHSHHTS-E CS
        IIGP 38 iavtGdsGnGkssFinaLRliGheeedsAptGvvettkkrt 78
                + v+G  G+Gks+F+na+ +    + +s ++    +t+ +t
  EGE24926.1 35 VTVIGTNGAGKSTFLNAISGAVRVDSGSIKINGQDVTRLKT 75
                78***************998877777777776666666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.2   0.00043      0.38      17      97 ..      32     175 ..      25     243 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaa.g......grviglAptgkaAkvLa...eelg..ieastiakllkrlk...................... 81 
                 g  ++++ G  G+GK+t l+a+  a++ + g      ++v  l   ++a +v +   + +    ea ti++     +                      
  EGE24926.1  32 G-EFVTVIGTNGAGKSTFLNAISGAVRVDsGsikingQDVTRLKTHQRAKQVARvfqDPMAgtCEALTIEE-----Nmalaykrggmrglagalnhknr 124
                 4.388999**************9999988567777766666665555544444322211111123333333.....22223345555555555555555 PP

      AAA_30  82 ...................................grarlepgtllivDEa 97 
                                                     +a+l+p+++l+ DE 
  EGE24926.1 125 elfreklsilklglenrltdrmgllsggqrqavslLMASLQPSKILLLDEH 175
                 555555555555555555555555556666665553345556666666665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.4    0.0017       1.6      23      89 ..     139     192 ..     122     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
     SbcCD_C  23 ekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 e +l +++g lSGG++  +++l +a      +       +  ++++LDE  + lD++++a +l+l++
  EGE24926.1 139 ENRLTDRMGLLSGGQR-QAVSLLMA-----SL-------QPSKILLLDEHTAALDPKTAAFVLDLTD 192
                 5678899999999999.44555444.....12.......2346899999999999999999888875 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0081       7.3       3      47 ..      33      76 ..      31     101 .. 0.67
   2 ?    3.9   0.0     0.056        51      23     111 ..     127     219 ..     120     229 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0081
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla 47
                + +++ G   +GK+t+l+ +     v ++  + in +d +  k  
  EGE24926.1 33 EFVTVIGTNGAGKSTFLNAISGAVRV-DSGSIKINGQDVTRLKTH 76
                6789************9988766554.455566666665554433 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.056
      AAA_14  23 ikellvkkesilyinldderdkkladpe....kllelileklkeekktylflDEiqev..pewekalkslvd....egknldvivtGSnskllskeiat 111
                 ++e+l    sil + l++  ++++   +    +  +l++++l++   ++l+lDE   +  p+   ++ +l d    eg+   ++vt S ++ l + ++t
  EGE24926.1 127 FREKL----SILKLGLENRLTDRMGLLSggqrQAVSLLMASLQP--SKILLLDEHTAAldPKTAAFVLDLTDkivsEGRLTTMMVTHSMQQALTHGTRT 219
                 44444....77777777766655443333333566777777655..789*****998877667777777777555466778999999999998887666 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00025      0.23      20      60 ..      36      76 ..      32      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00025
  Zeta_toxin 20 llgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPe 60
                 + G  GAGKs+ ++++  +++ +++ +++++ d+ +l  +
  EGE24926.1 36 TVIGTNGAGKSTFLNAISGAVRVDSGSIKINGQDVTRLKTH 76
                56799**************************9888766544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0011         1       3      23 ..      35      55 ..      33      64 .. 0.86
   2 ?    1.1   0.1      0.37   3.3e+02      80     115 ..     166     219 ..     119     251 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0011
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                v + G +G GK+t+l  +  a
  EGE24926.1 35 VTVIGTNGAGKSTFLNAISGA 55
                7899***********999765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.37
                 CCCEE...............EEEE-STT-SS-TCH............HHHHHCT CS
       NACHT  80 perlL...............lilDglDelvtdlgq...kekqpvrtlLselirk 115
                 p ++L               ++lD  D++v++ +    +   ++++ L++  r 
  EGE24926.1 166 PSKILlldehtaaldpktaaFVLDLTDKIVSEGRLttmMVTHSMQQALTHGTRT 219
                 344444444444557777778999888888865555554444455555554444 PP

>> DUF2625  Protein of unknown function DUF2625
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.35   3.1e+02      58      82 ..      53      77 ..      45     107 .. 0.73
   2 ?    8.6   0.1   0.00098      0.88      33      88 ..     193     247 ..     167     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.35
     DUF2625 58 tGGlliddGwlrvlGsgseklersl 82
                +G + +d+G +++ G   ++l+ + 
  EGE24926.1 53 SGAVRVDSGSIKINGQDVTRLKTHQ 77
                688889*******998877765443 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00098
     DUF2625  33 sekakkaLlklqvttrSvlGavvyetGGlliddGwlrvlGsgseklerslaslnkv 88 
                 +  ++  L ++ + t+S+  a+++ t  +++++G + +  sg+++   ++++l ++
  EGE24926.1 193 KIVSEGRL-TTMMVTHSMQQALTHGTRTVMLHQGQVMLDVSGDKRQGMNVQDLLNM 247
                 33444444.4556789**************************99988888887554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 1903.57
//
Query:       EGE24927.1  [L=297]
Description: branched-chain amino acid ABC transporter permease protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-31  108.5  43.5    3.9e-31  108.2  43.5    1.0  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2  43.5   2.2e-35   3.9e-31       3     268 .]       7     284 ..       5     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 2.2e-35
  BPD_transp_2   3 lnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvglt 99 
                   +  l +++i+a++AlG+ ++f+i+  ++l + g + lG+ va++ ++++ + ++la ++++++g+++g+++++l+++l++ +l++++l++++l+ ++
    EGE24927.1   7 FGALESGLIYALMALGVLISFRILDFPDLTADGSFPLGGAVAGICIVAGIN-PWLACVFGMMAGMVAGMMTAWLHVKLGILHLLAGILMMTALYSIN 102
                   6778999*****************************************999.********************************************* PP

  BPD_transp_2 100 lllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGal 196
                   l +++ +     gq++v ++l   g+ ++  +avi+ ++l++ l++ +++  t++G+ +ra+g+n ++a+a+Gin+ ++++l ++is +l +l+Gal
    EGE24927.1 103 LRIMNAPNLPLLGQPTVFTPLIDGGNGFWVRVAVIAGVVLVVKLVLDWFF-ITEMGLSMRATGSNLRMAQAQGINTPWIIILGMAISNGLIALSGAL 198
                   *******************9999999999999999866666655555544.59******************************************** PP

  BPD_transp_2 197 lalllgsippnigvglgfnaiaavvlGga........gsllgtviGaliigvvksllltllgi..........ptelarvllgallilvl 268
                   +++ +g++++++g+g++  ++aav++G a        +  l++viGa+++ +  + +l    +          +++l+ v  ++++i+++
    EGE24927.1 199 FVQTQGFADVSMGIGTIVIGLAAVIIGEAvlsakrifWMTLAVVIGAILYRLFIQIAL----SsellrgigfkSQDLNLVTAFLVIIVLM 284
                   ******************************9998888888888888888766544222....1223345666689999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2315.24
//
Query:       EGE24928.1  [L=332]
Description: putative ABC transport system substrate-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-97  326.1  11.3    2.1e-97  325.9  11.3    1.0  1  ABC_sub_bind     ABC transporter substrate binding protein
      0.007   16.0   2.7       0.13   11.9   0.5    2.2  2  SRP54            SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.015   15.7   2.1       0.02   15.2   0.1    2.2  2  Tir_receptor_M   Translocated intimin receptor (Tir) intimin-
      0.021   14.8   0.0       0.19   11.8   0.0    2.2  2  Glyco_trans_4_2  Glycosyl transferase 4-like
      0.036   12.6   0.0       0.06   11.8   0.0    1.3  1  PaRep2b          PaRep2b protein
      0.038   14.0   0.1       0.11   12.5   0.0    1.9  2  bact-PGI_C       Bacterial phospho-glucose isomerase C-termin
      0.087   13.3   0.0       0.21   12.0   0.0    1.6  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
      0.096   12.0   3.6       0.21   10.8   0.1    2.1  2  Peptidase_M17    Cytosol aminopeptidase family, catalytic dom
       0.12   12.3   0.1       0.27   11.2   0.1    1.6  1  DUF4223          Protein of unknown function (DUF4223)


Domain annotation for each model (and alignments):
>> ABC_sub_bind  ABC transporter substrate binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.9  11.3  1.1e-100   2.1e-97       1     292 [.      39     330 ..      39     331 .. 0.99

  Alignments for each domain:
  == domain 1  score: 325.9 bits;  conditional E-value: 1.1e-100
                   EEEEEES---HHHHHHHHHHHHHHHHTT--BTTTEEEEEEE-TT-HHHHHHHHHHHHTT--SEEEEESHHHHHHHHHH-SSS-EEEEEES-TTTTTS CS
  ABC_sub_bind   1 kiavaqfvehdaldaivkGikdaLkdkgveegknvlykvknaegdqskvaqiirqlkaekpdlivgiatpaaqilksatkniPiVfaavtdpvgakL 97 
                   ++a++++veh+alda+++G  d+L+++g++eg+n+ +++++a+g+ +++ qi+rq+  ++pdli++iatp+aq++++at +iP+Vf+avtdp+ a+L
    EGE24928.1  39 TVAITAIVEHPALDAARQGALDQLTKEGFKEGENLTVNFQSAQGNMATAGQIARQFTSDNPDLIYAIATPSAQAIAAATQDIPVVFSAVTDPIEARL 135
                   59*********************************************************************************************** PP

                   -S-SSS--SSEEEEE----HHHHHHHHHHHSTT--EEEEEE-TT-HHHHHHHHHHHHHHHHTT-EEEEEE-SSGGGHHHHHHHHHTT-SEEEE-S-H CS
  ABC_sub_bind  98 vksleapgenvTGvsdaekvektieLikkllPnvkkigilyspgeansvslveelkklakkaglkvveaavknvndvesavsslaekvdaiyiltdn 194
                   v +le++g+n+TG+sda + e +i+Li++l+P vk++g ++spge ns  + + lk+ ++  g++v+ea ++++ d+ +a++sl++ vd+iy+ tdn
    EGE24928.1 136 VANLENSGNNITGASDALPYEPQIALIQELVPTVKNVGYVFSPGEVNSTVVLKTLKEKLAPLGINVIEAPAQKSSDITQAANSLVGRVDVIYTSTDN 232
                   ************************************************************************************************* PP

                   HHHHTHHHHHHHHHHTT--EEESSHHHHHTT-SEEEE--HHHHHHHHHHHHHHHHTT--GGGS--EE----EEEE-HHHHHHTT----HHHHHH-SB CS
  ABC_sub_bind 195 liasafeavvkaanqakiPviasddesvkegalaalgvnekelGvqagkvvvkiLkGkkpkdipvsrakslklvinkkaakelgitikeellksaae 291
                   ++ +a+ea+ ++a+ akiP+i +d++ v++ga+aalgvn+++lG++agk++++iLkG+kp+dipv+ +++l+l i+kk a+e+gi ++++++++a++
    EGE24928.1 233 NVINAYEALYQVAKTAKIPLISADTSTVERGAVAALGVNYTDLGKEAGKIIARILKGEKPADIPVHISENLDLYISKKHAAEQGIILPQAVIDRATK 329
                   ***********************************************************************************************99 PP

                   - CS
  ABC_sub_bind 292 v 292
                   v
    EGE24928.1 330 V 330
                   8 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.5   6.5e-05      0.13       9      87 ..      20     102 ..      12     149 .. 0.75
   2 ?    4.3   0.1     0.013        26      31      71 ..     224     265 ..     206     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.5e-05
                 STTSSHHHHHHHHHHHHHHTTS-EEEE...EESTSSTTHHHHHHHHHHHTTEEEEE.SSTTSCHHHHHHHHHHHHHHTTSSEE CS
       SRP54   9 lqGaGKTttlaKLaallkkegkkvllv...aaDtfRaaAveQLktlaeklgvpvik.kkeeadpaavakeavekakeekidvv 87 
                   G  K t+ a La    k    +++v   a+D  R +A++QL   + k g +++   ++++  +a+a +  +++ +++ d++
  EGE24928.1  20 ACGGDKPTAQADLATSQAKTVAITAIVehpALDAARQGALDQLTKEGFKEGENLTVnFQSAQGNMATAGQIARQFTSDNPDLI 102
                 56889*********99999977777766669************9987665544433233344456666666666666666665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.013
                 -EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTS.CHHHH CS
       SRP54  31 kvllvaaDtfRaaAveQLktlaeklgvpvikkkeea.dpaav 71 
                 +v+  ++D   + A+e L ++a+++++p+i++++ + +  av
  EGE24928.1 224 DVIYTSTDNNVINAYEALYQVAKTAKIPLISADTSTvERGAV 265
                 67778999999******************9966554244444 PP

>> Tir_receptor_M  Translocated intimin receptor (Tir) intimin-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1     1e-05      0.02       7      43 ..      53      90 ..      48     101 .. 0.83
   2 ?   -1.5   0.2       1.6   3.2e+03       5      38 ..     110     146 ..     104     151 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
  Tir_receptor_M  7 eaeaatkDqLtqeafqnPdnqkvniD.enGnaiPsGeL 43
                    +a   + DqLt+e f++ +n  vn   ++Gn   +G++
      EGE24928.1 53 AARQGALDQLTKEGFKEGENLTVNFQsAQGNMATAGQI 90
                    6666778*****************96368998888765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
  Tir_receptor_M   5 aseaeaatkDq.LtqeafqnPdnqkv..niDenGnai 38 
                     a++  aat+D  +   a  +P + +   n+++ Gn i
      EGE24928.1 110 AQAIAAATQDIpVVFSAVTDPIEARLvaNLENSGNNI 146
                     5555667777424556777775544223788888877 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.5e-05      0.19      52     106 ..      75     126 ..      55     134 .. 0.75
   2 ?    0.1   0.0      0.37   7.5e+02      37      82 ..     191     239 ..     179     268 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
  Glyco_trans_4_2  52 vdrkgpleylk.afklkklikkikPDvvhahyakpygllgslaarlsgvipvvlsv 106
                      v+ +++ ++++ a ++++ ++ ++PD+++a+ +++      +aa  ++ ipvv+s+
       EGE24928.1  75 VNFQSAQGNMAtAGQIARQFTSDNPDLIYAIATPSAQA---IAA-ATQDIPVVFSA 126
                      455555556654779*****************998533...333.3556****997 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.37
  Glyco_trans_4_2  37 kdeleaegihvhrlkvdrkgpleyl.k.af.klkklikkikPDvvhahy 82 
                      k++l   gi+v++ + + ++ ++ + + +  ++  +++     v++a++
       EGE24928.1 191 KEKLAPLGINVIEAPAQKSSDITQAaNsLVgRVDVIYTSTDNNVINAYE 239
                      3444555555555544433322222111222333333333333333333 PP

>> PaRep2b  PaRep2b protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     3e-05      0.06     202     249 ..      32      80 ..      26      92 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
     PaRep2b 202 fsvryk.rskkievkyqprseasknaavnaLkarGlkeGvHftvkeegg 249
                 ++  +  ++    +  +p  +a+ + a++ L ++G+keG+  tv+ + +
  EGE24928.1  32 LATSQAkTVAITAIVEHPALDAARQGALDQLTKEGFKEGENLTVNFQSA 80 
                 5544442466667999****************************97755 PP

>> bact-PGI_C  Bacterial phospho-glucose isomerase C-terminal SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.7   5.4e+03       7      37 ..     112     139 ..     107     145 .. 0.67
   2 ?   12.5   0.0   5.5e-05      0.11       4      62 ..     211     274 ..     208     306 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.7
                 HHHHHHTTSEEEEE-..TT-THHHHHHHHHH CS
  bact-PGI_C   7 qlAlelagklpviygssellevaArRfknql 37 
                  +A + +  +pv+++  ++++++  R+   l
  EGE24928.1 112 AIAAATQ-DIPVVFS--AVTDPIEARLVANL 139
                 4444433.5888887..78888888877766 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.5e-05
                 HHHHHHHHHTTSEEEEE-..TT-THHHHHHHHHHHHTT----B---.SSHHHHHHHTT.....S CS
  bact-PGI_C   4 pakqlAlelagklpviygssellevaArRfknqlnenAKipafagvlpeanhneivgl.....e 62 
                 +  q A++l+g++ viy+s++     A+ +  q +++AKip +++    + +  +++l     +
  EGE24928.1 211 DITQAANSLVGRVDVIYTSTDNNVINAYEALYQVAKTAKIPLISADTSTVERGAVAALgvnytD 274
                 56799*************99999999******************99999999999888554441 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.21      54     105 ..      81     128 ..      26     154 .. 0.72
   2 ?   -2.6   0.0       3.3   6.6e+03      65      99 ..     218     252 ..     194     255 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
  Glyco_trans_4_4  54 ladlaalralrrllrqrrerpdvvhahsptaglaarlarrrrgiplvvtlhg 105
                       +++a + + +r++   + +pd+++a   ++++a+++a    +ip+v+++ +
       EGE24928.1  81 QGNMATAGQIARQF--TSDNPDLIYAIATPSAQAIAAAT--QDIPVVFSAVT 128
                      35677788888888..9***********98888775555..79****99865 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
  Glyco_trans_4_4  65 rllrqrrerpdvvhahs.pt....aglaarlarrrrgipl 99 
                      +l+     r+dv+++ +         ++  +a+ +++ipl
       EGE24928.1 218 SLV----GRVDVIYTSTdNNvinaYEALYQVAK-TAKIPL 252
                      333....77777775543222222223334444.566666 PP

>> Peptidase_M17  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00011      0.21     157     240 ..      69     157 ..      27     193 .. 0.76
   2 ?    1.9   0.7     0.056   1.1e+02     135     222 ..     195     286 ..     189     298 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                    TS-EEEES-TTGCHHHHHHHHHHHHHGCT--SEEEEEE---THHHHHHTTTSEEEEES-.....HHHHHHHHHHHHHHS-EEEE----H CS
  Peptidase_M17 157 nGktvevlnTDaEGRLvLADalayaeekekpdlivdvATLTgavvvalGkkaaglfsnd.....delaeelekageeagervwrlplee 240
                    +G++  v+   a G +  A  +a   ++++pdli  +AT   +++ a  +++  +fs        +l+++le++g++       lp+e+
     EGE24928.1  69 EGENLTVNFQSAQGNMATAGQIARQFTSDNPDLIYAIATPSAQAIAAATQDIPVVFSAVtdpieARLVANLENSGNNITGASDALPYEP 157
                    68889999999*************98888***************************987534434666677777777766667777664 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.056
                    EEEEEE--STTSTTTTEEEE-TTS-..EEEES-TTGCHHHHHH.HHHHHHHGCT--SEE.EEEE---THHHHHHTTTSEEEEES-HHHHHHH CS
  Peptidase_M17 135 lplaeNmisgkavkpgdvitamnGk..tvevlnTDaEGRLvLA.Dalayaeekekpdli.vdvATLTgavvvalGkkaaglfsnddelaeel 222
                    +pl  N+i+  a+k +d+ +a n    +v v  T  +  ++ A  al+ ++++ k  li  d++T    +v alG +++ l ++  ++ +++
     EGE24928.1 195 APLGINVIEAPAQKSSDITQAANSLvgRVDVIYTSTDNNVINAyEALYQVAKTAKIPLIsADTSTVERGAVAALGVNYTDLGKEAGKIIARI 286
                    6777899**************99753379999999999999885677777655554444279999999999999999988777766666665 PP

>> DUF4223  Protein of unknown function (DUF4223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00013      0.27       1      23 [.       1      24 [.       1      28 [. 0.95

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
     DUF4223  1 mkklvkialvaavvs.tltaCtGs 23
                m++++k +l a++v+ tl+aC G+
  EGE24928.1  1 MNNFLKTTLWASLVAlTLAACGGD 24
                9**************99****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2681.69
//
Query:       EGE24929.1  [L=354]
Description: ABC transporter substrate binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-86  290.8   5.0    1.2e-86  290.6   5.0    1.0  1  ABC_sub_bind  ABC transporter substrate binding protein


Domain annotation for each model (and alignments):
>> ABC_sub_bind  ABC transporter substrate binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.6   5.0   6.9e-91   1.2e-86       1     284 [.      52     336 ..      52     345 .. 0.97

  Alignments for each domain:
  == domain 1  score: 290.6 bits;  conditional E-value: 6.9e-91
                   EEEEEES---HHHHHHHHHHHHHHHHTT--BTTTEEEEEEE-TT-HHHHHHHHHHHHTT--SEEEEESHHHHHHHHHH-SSS-EEEEEES-TTTTTS CS
  ABC_sub_bind   1 kiavaqfvehdaldaivkGikdaLkdkgveegknvlykvknaegdqskvaqiirqlkaekpdlivgiatpaaqilksatkniPiVfaavtdpvgakL 97 
                   +ia++++veh++ld+i+ G+ d+L+  g+++g+n+ +++++a+g+ ++v qi++q++a+ pd iv+i+tp+aq l++at +iP + +av+dpv+akL
    EGE24929.1  52 TIAITAIVEHPSLDDIRLGVVDGLASLGYKDGENLTVNFQSAQGNMATVGQIAKQFVADTPDAIVAITTPSAQSLAAATTSIPLIYTAVSDPVAAKL 148
                   59*********************************************************************************************** PP

                   -S-SSS.--SSEEEEE----HHHHHHHHHHHSTT--EEEEEE-TT-HHHHHHHHHHHHHHHHTT-EEEEEE-SSGGGHHHHHHHHHTT-SEEEE-S- CS
  ABC_sub_bind  98 vkslea.pgenvTGvsdaekvektieLikkllPnvkkigilyspgeansvslveelkklakkaglkvveaavknvndvesavsslaekvdaiyiltd 193
                    ++  +  + n+TG+s + ++e ++eL++k+ P++k+ig ++spgeansv++ ++l+++++k g+++ve+ ++++ dv  a++sla+kvd +y+  d
    EGE24929.1 149 LNNNHQaTQPNITGLSSQLPIEPQVELFQKIKPEAKRIGFVFSPGEANSVAVKNKLIEILPKYGMTLVEVPANRSSDVGDATRSLAGKVDLLYTSLD 245
                   9876551567*************************************************************************************** PP

                   HHHHHTHHHHHHHHHHTT--EEESSHHHHHTT-SEEEE--HHHHHHHHHHHHHHHHTT--GGGS--EE----EEEE-HHHHHHTT----HH CS
  ABC_sub_bind 194 nliasafeavvkaanqakiPviasddesvkegalaalgvnekelGvqagkvvvkiLkGkkpkdipvsrakslklvinkkaakelgitikee 284
                   n +asa+ea+v aan+ +iPvi+sd+ sv++ga+aalgvn ++ G +++k+v+++L Gk p++i++++++ l+l+i++k a+++g+t++  
    EGE24929.1 246 NGVASAMEAMVLAANELQIPVITSDEFSVRRGATAALGVNDYDFGLTTAKLVAQVLDGKSPNEIKPEVMNTLTLFISPKHAANQGVTVDLT 336
                   **************************************************************************************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2735.33
//
Query:       EGE24930.1  [L=324]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.3    6.8   5.9        9.3    6.0   5.9    1.3  1  MAJIN     Membrane-anchored junction protein


Domain annotation for each model (and alignments):
>> MAJIN  Membrane-anchored junction protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.9   0.00052       9.3     117     195 ..     216     294 ..     211     323 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00052
       MAJIN 117 GkpindsPlglvlaekkaaeavlkkrkkveepssPsragldrakletsseaaskkkplketrrnreeksqqekqeteas 195
                  +p +ds +     +k a +a++  r + e++s  s ++ +++++++ss a s+ ++ ++++ + +++ ++e++  ++s
  EGE24930.1 216 SNPQEDSSVTTYIEQKPAPNAQVSSRPRSEMSSNNSAQTPTQNSVGQSSAAGSTPRVDRDSQAKANTERTTERSANKTS 294
                 57889999999999*****************************************999988877766666665444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1300  (0.0725082); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2567.59
//
Query:       EGE24931.1  [L=314]
Description: methyltransferase type 11 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-13   49.1   0.0    8.1e-13   48.4   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    7.8e-12   45.7   0.0    1.5e-11   44.9   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.6e-11   44.7   0.0    3.1e-11   43.8   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    1.2e-08   35.6   0.0      2e-08   34.9   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    2.8e-08   33.8   0.0    4.2e-08   33.2   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
      4e-05   23.1   0.0      6e-05   22.5   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    6.6e-05   22.3   0.0    9.8e-05   21.8   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0028   17.2   0.0     0.0042   16.6   0.0    1.3  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.016   14.7   0.0       0.33   10.4   0.0    2.2  2  CheR             CheR methyltransferase, SAM binding domain
       0.05   13.5   0.1       0.24   11.3   0.1    2.0  2  Methyltransf_18  Methyltransferase domain
       0.05   13.2   0.0      0.096   12.3   0.0    1.4  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
      0.063   12.4   0.0       0.18   10.9   0.0    1.6  2  Methyltransf_3   O-methyltransferase
      0.088   12.8   0.0       0.12   12.3   0.0    1.2  1  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   5.9e-16   8.1e-13       3     110 ..     102     206 ..     100     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 5.9e-16
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                      + lr+lD G+G  ++++ la    ++ +v+  Dis +++  A+ +a++lg+   v+F  ++ ++l+++l+ e+fD+il++++l  l +p+ki+ 
       EGE24931.1 102 RPLRILDMGAGLAQISLSLA----SDHHVTVNDISTNMLDMAKDHAKSLGVYdQVRFITCPYQALSNHLAGEQFDIILCHALLEWLGEPEKIMT 191
                      5689****************....6899**********************655*************99666*********************** PP

  Methyltransf_31  96 eiervlkpggillie 110
                         ++l +gg l ++
       EGE24931.1 192 FFDQYLADGGMLSLC 206
                      **********99776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.1e-14   1.5e-11       1      97 []     106     201 ..     106     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.1e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekalkeia 90 
                      +Ld+G+G  +++l la     ++vt  Dis +ml+ a+ +a++ g+  +v+f+++  ++l+  ++ ++fD++++   l++l +++  k++  + 
       EGE24931.1 106 ILDMGAGLAQISLSLASD---HHVTVNDISTNMLDMAKDHAKSLGVydQVRFITCPYQALSnhLAGEQFDIILCHALLEWLGEPE--KIMTFFD 194
                      8***************87...8**********************99*************98556999*******655***98665..7777777 PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                      + L +gG
       EGE24931.1 195 QYLADGG 201
                      7777776 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   2.3e-14   3.1e-11       1      95 [.     107     204 ..     107     205 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 2.3e-14
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCT..SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaekl..pfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      Ld+G+G  +++  la+   +v+  D+s++ml++ak++a+  g+  +v+f+ +  + l   ++ ++fD+++++  l+++ +pek++  + + L  
       EGE24931.1 107 LDMGAGLAQISLSLASDH-HVTVNDISTNMLDMAKDHAKSLGVydQVRFITCPYQALsnHLAGEQFDIILCHALLEWLGEPEKIMTFFDQYLAD 199
                      89*************555.9***********************************99545********************************** PP

                      EEEEE CS
  Methyltransf_11  91 gGllv 95 
                      gG+l 
       EGE24931.1 200 GGMLS 204
                      **985 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.4e-11     2e-08       1      99 []     107     203 ..     107     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.4e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      L+ G+G ++++  l+ +    ++t+ Dis+++++ ak + ++ + ++  +v++ ++    l+     ++fD+++++ +l++l ++++++  + +
       EGE24931.1 107 LDMGAGLAQISLSLASD---HHVTVNDISTNMLDMAKDHAKSLGVYD--QVRFITCPYQALSNHlagEQFDIILCHALLEWLGEPEKIMTFFDQ 195
                      899***99999999777...*************99999988888765..444444443333333447*************************** PP

  Methyltransf_12  92 lLkpgGrl 99 
                       L++gG+l
       EGE24931.1 196 YLADGGML 203
                      ******97 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   3.1e-11   4.2e-08       6     128 ..      88     217 ..      82     244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 3.1e-11
  Methyltransf_23   6 eeelsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.......kakkaqkdqfdeq..eaaepqg......... 81 
                      ++ ls++ ++l+  l+++ r+Ld+G+G    + +l+   ++vt+ D+s ++ ++a+                 + q  ++++p +         
       EGE24931.1  88 QQDLSEAMDQLM--LNRPLRILDMGAGLAQISLSLAS-DHHVTVNDISTNMLDMAKdhakslgV---------YDQvrFITCPYQalsnhlage 169
                      456777777777..9**************77776643.37**************9655432220.........222222222222334445556 PP

  Methyltransf_23  82 kfdlIvlrevlehvpdppellrqiatllkpgGylllseplaslk.edr 128
                      +fd+I +  +le++  p++ ++ + ++l++gG l l+ ++  +k  ++
       EGE24931.1 170 QFDIILCHALLEWLGEPEKIMTFFDQYLADGGMLSLCFYNPASKiYRN 217
                      ************************************999876644444 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.3e-08     6e-05      41     120 ..      96     174 ..      82     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.3e-08
                      HH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS-..T-EEEE CS
  Ubie_methyltran  41 klvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfed..dsfDvv 120
                      +     r+ ++lD+ +G + ++++l+    +  +v+v Di+ nmL+++++++k  g++ +++f++   ++L  +   + fD++
       EGE24931.1  96 DQLMLNRPLRILDMGAGLAQISLSLA----SDHHVTVNDISTNMLDMAKDHAKSLGVYdQVRFITCPYQALSNHLagEQFDII 174
                      5556678999*******999988876....467899********************9999****9998888765333777776 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.1e-08   9.8e-05      50     162 ..      90     203 ..      83     215 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.1e-08
                 HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---.....--SEEEEES-GGGTSG. CS
        CMAS  50 KldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde.....kvdrvvsvgafehvgk. 142
                  l  ++++l l+   ++Ld+G+G  ++    ++ + v v    +S++   +ak++ ++l++ ++v+   + y+ l++     ++d +    ++e +g+ 
  EGE24931.1  90 DLSEAMDQLMLNRPLRILDMGAGLAQISLSLASDHHVTVND--ISTNMLDMAKDHAKSLGVYDQVRFITCPYQALSNhlageQFDIILCHALLEWLGEp 186
                 567789*************************9998887765..7*******************************9888889**************963 PP

                 GGHHHHHHHHHHHS-TT-EE CS
        CMAS 143 enydtffkklkkllkedGll 162
                 e+  tff+   + l ++G+l
  EGE24931.1 187 EKIMTFFD---QYLADGGML 203
                 67777775...556666665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.1e-06    0.0042      31     103 ..     102     176 ..      85     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.....EEEEE-STTTTSTTS-EEEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.....vevvasdvleeveekkfdlivs 103
                 +  ++lD+G+G   ++++la+   +++vt+ d++++ l++ak  +++ ++      +++  + + ++++ ++fd+i++
  EGE24931.1 102 RPLRILDMGAGLAQISLSLAS---DHHVTVNDISTNMLDMAKDHAKSLGVYdqvrfITCPYQALSNHLAGEQFDIILC 176
                 4446**************998...5679******************99987775566666677788888999999987 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.048        66      64      82 ..     123     141 ..      82     167 .. 0.73
   2 ?   10.4   0.0   0.00024      0.33     120     173 ..     155     205 ..     140     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.048
                 -EEEEEEESSCHHHHHHHH CS
        CheR  64 kvkilAtDidlkvlekAka 82 
                 + +++ +Di++++l++Ak 
  EGE24931.1 123 DHHVTVNDISTNMLDMAKD 141
                 5678999********9985 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00024
                 EEEEE--TTT-SGGG--EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE CS
        CheR 120 vkFeklnllekksvlgklDvifcrnvliYfdeetqekvlerfaeklkpgglLll 173
                 +++ ++ l + + + +++D+i+c  +l ++ e++  k++  f + l++gg+L l
  EGE24931.1 155 ITCPYQALSN-HLAGEQFDIILCHALLEWLGEPE--KIMTFFDQYLADGGMLSL 205
                 4555555555.77889***************996..699***********9965 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   1.7e+03      29      55 ..       7      33 ..       6      44 .. 0.78
   2 ?   11.3   0.1   0.00017      0.24      13      71 ..     101     156 ..      88     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
  Methyltransf_18 29 piylvkegkakkviasDinegplekak 55
                     piy + ++ka+ +i  D ++ p+ +  
       EGE24931.1  7 PIYKIYRRKARCAIILDWRKCPYYNTI 33
                     788899999**********99986653 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00017
  Methyltransf_18  13 ekgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrl 71 
                      ++  r++D G+  + +++ l++ +   +v++ Di+++ l+ ak+++++ g+ d+++++ 
       EGE24931.1 101 NRPLRILDMGAGLAQISLSLASDH---HVTVNDISTNMLDMAKDHAKSLGVYDQVRFIT 156
                      4455899************99765...6799**********************999876 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     7e-05     0.096      10      76 ..     110     175 ..     105     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7e-05
  Methyltransf_15  10 GaGGnviqfalv.fekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvf 76 
                      GaG   i + l   ++v   +i+++ l +a+  a++ gv d++ ++++ ++ l ++l  e+   d+++
       EGE24931.1 110 GAGLAQISLSLAsDHHVTVNDISTNMLDMAKDHAKSLGVYDQVRFITCPYQALSNHLAGEQF--DIIL 175
                      66666666666534589999******************************999999888777..7776 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   1.5e+03      76     119 ..      55     102 ..      53     110 .. 0.68
   2 ?   10.9   0.0   0.00013      0.18      62     130 ..     113     177 ..     108     181 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
                     EEEES-HHHHHHHHHHHHHT..T-GGGEEE..EES-HHHHHHHHHTSS CS
  Methyltransf_3  76 laididreayeialkfiqka..gvaekiel..iegdalkvLeelvkdk 119
                     ++i  dr+  +i+ +f +k   g++ +i l   + d  +++++l+ + 
      EGE24931.1  55 MTITNDRNFDAISEHFAKKVygGLKGRIRLavLQQDLSEAMDQLMLNR 102
                     578889999999999999953367766654114566677777777665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00013
                     HHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSSS---EEEEEE- CS
  Methyltransf_3  62 lLatalalPeDGkilaididreayeialkfiqkagvaekieliegdalkvLeelvkdkklpefDfifvD 130
                     l +++l+l  D +++  di  +  ++a+++ +  gv +++ +i+ + ++  ++l  ++    fD+i+  
      EGE24931.1 113 LAQISLSLASDHHVTVNDISTNMLDMAKDHAKSLGVYDQVRFITCPYQALSNHLAGEQ----FDIILCH 177
                     5567899***************************************998888888776....9988765 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     9e-05      0.12      23      87 ..     100     157 ..      84     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9e-05
  Methyltransf_32  23 esgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfael 87 
                       +++l+++D+GaG +  s  la+      ++v+  d+++++ + a++ a+ lg  + ++++f++ 
       EGE24931.1 100 LNRPLRILDMGAGLAQISLSLAS-----DHHVTVNDISTNMLDMAKDHAKSLG-VY-DQVRFITC 157
                      46789******************.....6999999999999999999999999.44.88887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2500.68
//
Query:       EGE24932.1  [L=498]
Description: putative polysaccharide modification protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-17   62.0  13.1      6e-17   62.0  13.1    3.1  3  MBOAT     MBOAT, membrane-bound O-acyltransferase family
     0.0058   16.9   1.1     0.0058   16.9   1.1    3.2  3  MBOAT_2   Membrane bound O-acyl transferase family


Domain annotation for each model (and alignments):
>> MBOAT  MBOAT, membrane-bound O-acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   5.1      0.16   1.4e+03     163     242 ..      11      77 ..       6      83 .. 0.83
   2 !   62.0  13.1   6.7e-21     6e-17      88     341 ..     149     395 ..     132     402 .. 0.83
   3 ?   -1.3   0.3      0.12   1.1e+03     319     342 ..     425     448 ..     388     454 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.16
       MBOAT 163 ftifkmlssaqllmrsvimrilllllllfllifdflglwlvalgedilsGlgvngarldrvadrniygdwenavsfsefw 242
                 +++  +l  ++l++++  ++ +l +l ++++i+ ++g    +l+  il+G +           +++++ + n   ++ fw
  EGE24932.1  11 LMFIGFLAIYWLFRQTPKFQNFLIILFSYTVIYLMAG----TLATEILFGYT---------IFVFFITKMMNGSKIKKFW 77 
                 567889999999*********************8888....555569***87.........4678888888999998888 PP

  == domain 2  score: 62.0 bits;  conditional E-value: 6.7e-21
       MBOAT  88 lpslleylgYvffyplllvGPilsyseymsfvesplsrllyta................krnfavalyalflgltylilieyvlskicakdftifkmls 170
                   s++  l+ ++f+ +  +GPi + +     + s l +++  +                +   ++al+ + l+l++++ +  +l++  ++ +   +m+ 
  EGE24932.1 149 QLSFMALLHHLSFFGTISAGPIARTK-----SVSGLTDIEGNPcgmseqiisqnprrilF--PTIALCLILLALIKKWWLAGWLADHWVNPIFANPMQY 240
                 57888889999999999999998866.....34444444444455667788888775432..2467777778889999999999999998888888774 PP

       MBOAT 171 saqllmrsvimrilllllllfllifdflglwlvalgedilsGlgvngarldrvadrniygdwenavsfsefwraWNipvhkWLlryvYkplg.skkfkl 268
                          +  ++++++l  +l  df+g+  + +++ +l+G+           ++n+  +   a++++ fw +W+i++++W + y+Y+plg s+++  
  EGE24932.1 241 -----HSLEVLVAIYGYTLQLFL--DFSGYSEMMVAFGLLIGFR---------LPVNFKAPL-IAHNIRVFWDRWHISLSTWIRDYIYIPLGgSRQGFI 322
                 .....233466777888887777..99***************98.........7******99.******************************888888 PP

       MBOAT 269 nkslatlatFlfsAvwHglalgyliwfvlrvllllveklimrlvalsnlkfdrrrailsnvifwlgaflgpsl 341
                 ++ +++l+  ++s +wHg +  +l+w+vl++l+++  +   +l++ +  ++ ++ ++++    wlg  +g+ +
  EGE24932.1 323 KTQVNLLIAMALSGIWHGSSVNFLLWGVLHGLAIIWLNCTDKLYQNIYAVDAKHARNALYRHSWLGKVIGIFV 395
                 9********************************************9999999999999999999887777665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.12
       MBOAT 319 fdrrrailsnvifwlgaflgpsla 342
                 ++++ a+ +n++f l +f++ +++
  EGE24932.1 425 NHTNIAWSGNPLFILALFMIAWFI 448
                 455566666777777777766655 PP

>> MBOAT_2  Membrane bound O-acyl transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.47   4.2e+03       3      36 ..     232     244 ..     218     272 .. 0.57
   2 !   16.9   1.1   6.4e-07    0.0058       2      64 ..     279     340 ..     278     348 .. 0.92
   3 ?   -0.9   0.0      0.23     2e+03      45      61 ..     474     490 ..     453     491 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.47
     MBOAT_2   3 plfgslleayslrrfWgrfWHqlfrrglkstakk 36 
                 p+f ++++ +sl                      
  EGE24932.1 232 PIFANPMQYHSL---------------------E 244
                 444444444444.....................3 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 6.4e-07
     MBOAT_2   2 pplfgslleayslrrfWgrfWHqlfrrglkstakkilrlllgsklarylqllvaFllSGllHa 64 
                 p  f+ +l a+ +r fW r WH  ++ +++ +++ +l   ++  +++ ++ll+a +lSG+ H 
  EGE24932.1 279 PVNFKAPLIAHNIRVFWDR-WHISLSTWIRDYIYIPLGGSRQGFIKTQVNLLIAMALSGIWHG 340
                 567999999********87.8******************9999999****************6 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.23
     MBOAT_2  45 klarylqllvaFllSGl 61 
                  l  +l+++v+F+ SG+
  EGE24932.1 474 LLFVCLMIVVIFAPSGI 490
                 4677899********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3684.28
//
Query:       EGE24933.1  [L=365]
Description: GDSL-like lipase/ccylhydrolase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-21   75.9   0.1    3.8e-21   75.4   0.1    1.2  1  DUF459         Protein of unknown function (DUF459)
    1.6e-12   47.8   1.6    2.3e-12   47.3   0.4    1.8  2  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
    2.4e-12   47.6   0.0    5.2e-12   46.5   0.0    1.5  2  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
  ------ inclusion threshold ------
       0.05   12.3   0.1      0.083   11.6   0.1    1.3  1  ResB           ResB-like family


Domain annotation for each model (and alignments):
>> DUF459  Protein of unknown function (DUF459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.1   8.5e-25   3.8e-21      79     306 ..     133     352 ..      97     363 .. 0.85

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 8.5e-25
      DUF459  79 vavsppgvevndsvaekktdararvfsrtalrvlvvGdsqarylaeGllivladssavrivevsvsssGfvrddyynWPrkikalldthtqeePyaavv 177
                 +  +p +   n  v+e k+d +  +  ++   ++  Gds+++++a  +++ l ++ +++ v+ +  s+G+     +nWP+ ik  l   ++      +v
  EGE24933.1 133 LESTPAAQMDNVGVSEAKPDNPYVI--HSGDEIFFAGDSMMQGVAPHIQQYLQKNYNIKSVNLAKQSTGLAYPSLFNWPKTIKETLSINANI---KILV 226
                 44455566667899********444..4566899*************************************************999994444...5699 PP

      DUF459 178 valGsndrqnlkd.advslevtkserWekeyerktdellkiilhavakvyllGmPetrvkklnekllaiedvqkkvvesydgervdvydlkpivpGvnG 275
                 v lG nd  ++ d  ++ + + ++ +We  y +++ ++l+      ++v  +  P+++ +kln+++++++++ +   +++    +d  +l      +  
  EGE24933.1 227 VFLGPNDPWDMPDlVNGGQLKFQTPEWEMGYRQRMMDILDSAKNHNTQVIWITPPNMKKQKLNKQMIYLNQIMQDELKRHHVLIIDSRKLLGTSDDIYN 325
                 ***********87457789999*****************99999999*****************************99999888888774444444433 PP

      DUF459 276 ayvsairdtnGrwvrlrakdGinvskeGkay 306
                          +G+ v++r+ dGi++s++G+  
  EGE24933.1 326 D----YLIQDGKSVKMRTADGIHFSVKGQKL 352
                 3....34467******************854 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.36   1.6e+03     151     172 ..     105     128 ..      58     142 .. 0.64
   2 !   47.3   0.4   5.2e-16   2.3e-12       1     199 [.     163     356 ..     163     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.36
                  HHHHHHHHH..HCTEEEECHHHHH CS
                  xxxxxxxxx..xxxxxxxxxxxxx RF
  Lipase_GDSL 151 nqrlndlae..kdgfavvDlydel 172
                  nq+ +++++  +d++a+ + y+ +
   EGE24933.1 105 NQKNQQIVDyfNDNLAYTPKYQAM 128
                  222222222222444444444444 PP

  == domain 2  score: 47.3 bits;  conditional E-value: 5.2e-16
                  EEEEESHHHHTT....THHHHHHHCCCCEECCCTTC...GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTSEEEEE--CTCC.......-EE CS
                  xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxx RF
  Lipase_GDSL   1 ivafGDSltdGd....gaatlntiqlktpknlnefdl..aldrianignkgasdnelqqllnkyplkseqlkalhpdlviislGtNDs.......nlg 85 
                  i++ GDS ++G+     ++   ++++k+  nl ++++  a  + +n + +   +   + ++      +         +++++lG ND        n g
   EGE24933.1 163 IFFAGDSMMQGVaphiQQYLQKNYNIKS-VNLAKQSTglAYPSLFNWPKTIKETLSINANI------K---------ILVVFLGPNDPwdmpdlvNGG 244
                  89*********98887555555555555.55555555456666777777777777777777......7.........*************99665555 PP

                  CSSCTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHHHHHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  86 kkstdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnefvgeynqrlndlaekdgfavvDlydelqglsgieqlka 183
                  +++ ++ ++e   y++++++ ++  k   ++++ v+ ++pp+  +          +k+n+ + + nq+++d ++  ++  +D  + l+  ++i + + 
   EGE24933.1 245 QLKFQTPEWEM-GYRQRMMDILDSAK---NHNTQVIWITPPNMKK----------QKLNKQMIYLNQIMQDELKRHHVLIIDSRKLLGTSDDIYNDYL 328
                  44444444443.59999999999555...688*************..........******************************************* PP

                  ............TSSSB-HHHHHHHHHH CS
                  ............xxxxxxxxxxxxxxxx RF
  Lipase_GDSL 184 ............DglHpsekgyeklael 199
                              Dg+H+s kg++++a++
   EGE24933.1 329 iqdgksvkmrtaDGIHFSVKGQKLIAQA 356
                  *************************987 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   6.8e+03      40      61 ..      95     121 ..      73     142 .. 0.60
   2 !   46.5   0.0   1.2e-15   5.2e-12       1     179 []     165     352 ..     165     352 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                    EHCCH.-H......HHHHHHHHCTGGG CS
  Lipase_GDSL_2  40 gvsGa.tt....allrllerlrdllrl 61 
                    +  G+ t+     ++++ ++++d l++
     EGE24933.1  95 AWHGDlTSainqKNQQIVDYFNDNLAY 121
                    444443334444334444444444444 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 1.2e-15
                    EEESHHHHTCTTBCCHCHHCCCCCCCHHHTT-EEEEE.EEHCCH-H.....HHHHHHHHCTGGG-T..SEEEEE--CCC..............CCT CS
  Lipase_GDSL_2   1 alGDSiTaGygadgggrsypaylarllaarlgldvvnnlgvsGatt...allrllerlrdllrlkp..dlvtiliGtND..............lgr 77 
                    + GDS+++G+         p+  +++l+++++ + vn l+   +     +l ++++ + + l +++  +++++++G ND              + +
     EGE24933.1 165 FAGDSMMQGV--------APHI-QQYLQKNYNIKSVN-LAKQSTGLaypSLFNWPKTIKETLSINAniKILVVFLGPNDpwdmpdlvnggqlkFQT 250
                    579*****96........5788.*************9.88888866678899999999999999999999*********99988887777744333 PP

                    T--HHHHHHH..HHHHHHHHCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHHCCCCCGGBBTTS..... CS
  Lipase_GDSL_2  78 gvpaaaaaandnleelidalraaapgarilvlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDlhdaladsgerladlladdg.... 169
                    + ++  +++  ++  ++d ++++       ++++++ tp+++++++  n++  ++n+++++  ++++v  +D +++l  s++ + d+l  dg    
     EGE24933.1 251 PEWEMGYRQ--RMMDILDSAKNH-------NTQVIWITPPNMKKQKL-NKQMIYLNQIMQDELKRHHVLIIDSRKLLGTSDDIYNDYLIQDGksvk 336
                    444444444..6*********99.......55555888888888776.9999******************************************** PP

                    ......SSB-HHHHHH CS
  Lipase_GDSL_2 170 ......lHPnaaGyrl 179
                          +H++ +G++l
     EGE24933.1 337 mrtadgIHFSVKGQKL 352
                    *************985 PP

>> ResB  ResB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.9e-05     0.083       7      38 ..      41      72 ..      40      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
        ResB  7 LLlllaiaSiiGtvlpQnepsanyvqqyiaeg 38
                LL++l++ + +G+ + Qn+ +a+y+q+y +++
  EGE24933.1 41 LLIVLCLFATLGAWIMQNSINAYYLQTYHKSS 72
                9*****************77777*****5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2716.39
//
Query:       EGE24934.1  [L=407]
Description: periplasmic protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-15   55.7   0.0    2.1e-14   54.0   0.0    1.8  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
    7.1e-14   52.6   0.6    7.7e-13   49.2   0.0    2.1  2  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    0.00039   20.6   0.1     0.0015   18.7   0.1    2.0  1  Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   3.5e-18   2.1e-14       1     199 [.      43     363 ..      43     364 .. 0.74

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 3.5e-18
                  EEEEESHHHHTT......................................................THHHHHHHCCCCEECCCTTC............ CS
                  xxxxxxxxxxxx......................................................xxxxxxxxxxxxxxxxxxxxx........... RF
  Lipase_GDSL   1 ivafGDSltdGd......................................................gaatlntiqlktpknlnefdl........... 33 
                  iv +GDS+t+Gd                                                                          +           
   EGE24934.1  43 IVQLGDSHTAGDsmtealrsqlqsrygnggmgwampmyfsgqrmarygydnyqwtpissrrnqnedY-------------------Tlggliakpnfs 121
                  788*******997777777777777777777777777777777777744333333333333333330...................356677777777 PP

                  ....................................................................GCEEEEEEECTTHHHHHHHCCH........ CS
                  ....................................................................xxxxxxxxxxxxxxxxxxxxxx........ RF
  Lipase_GDSL  34 ....................................................................aldrianignkgasdnelqqll........ 55 
                                                                                         + a +g++g s +el   +        
   EGE24934.1 122 gstltikaknqepmqsmtvsirqsatdglfkisdadgnhlileapikndtwqtttfdaklpftltaegSMTNTAIGGWWGRSKHELGAIVsslginga 219
                  77777777777777777999999999999999999988888888888888888888888999899777333444444444444444444466666666 PP

                  .......ECTTTECHHHHHCTTSEEEEE--CTCC-EECSSCTTTCEEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHH CS
                  .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  56 .......nkyplkseqlkalhpdlviislGtNDsnlgkkstdaakkeaeeyiknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnef 146
                          +++ +++ l    p+l+i+  GtN+          ++++ae++ + l+e i+++++++ p+ ++++vs p++ +   ++a  +g ++ ++
   EGE24934.1 220 elshwsrWNQNAWQQELATIAPELIILAYGTNEA--------YNNLSAERIATVLDERIEQIRQAS-PHSAIMIVSSPEVLK---NTAGSCGVRPPTL 305
                  66666554455566667777788***********........*********************777.999999999999999...9999999999875 PP

                  HHHHHHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCH........TSSSB-HHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxx RF
  Lipase_GDSL 147 vgeynqrlndlaekdgfavvDlydelqglsgieqlka........DglHpsekgyeklael 199
                     + ++ +++a++++  ++D+ + ++g       ++        Dg+H++  gy++l+++
   EGE24934.1 306 -HAIQEVQRQTAQNKHTLFWDWQSAMGGS--CSMKQWmksgkatkDGVHFTHLGYQQLGRQ 363
                  .456777889******************9..33333366788999************9976 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2     0.063   3.8e+02       2      17 ..      46      70 ..      46     112 .. 0.64
   2 !   49.2   0.0   1.3e-16   7.7e-13      14     178 ..     191     358 ..     184     359 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.063
                   EESHHHHTCTTB.........CCHC CS
  Lipase_GDSL_2  2 lGDSiTaGygad.........gggr 17
                   lGDS TaG   +         ++g+
     EGE24934.1 46 LGDSHTAGDSMTealrsqlqsRYGN 70
                   6888888743223322224443333 PP

  == domain 2  score: 49.2 bits;  conditional E-value: 1.3e-16
                    CCHCHHCCCCCCCHHHTT-EEEEE.EEHCCH-H........HHHHHHHHCTGGG-TSEEEEE--CCCCCTT--HHHHHHH..HHHHHHHHCCC... CS
  Lipase_GDSL_2  14 gggrsypaylarllaarlgldvvnnlgvsGatt......allrllerlrdllrlkpdlvtiliGtNDlgrgvpaaaaaandnleelidalraaapg 103
                     ++ +  ++   + +++lg+ v   lg++Ga        ++ ++++   +l++++p l+++  GtN ++++ +a+++a+   l+e i+++r+a+p+
     EGE24934.1 191 MTNTAIGGW-WGRSKHELGAIVSS-LGINGAELshwsrwNQNAWQQ---ELATIAPELIILAYGTNEAYNNLSAERIATV--LDERIEQIRQASPH 279
                    566777788.77777888888888.******776544444444444...666***************************9..************** PP

                    GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-H....HHHHHHCCCCCGGBBTTS.SSB-HHHHH CS
  Lipase_GDSL_2 104 arilvlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDl....hdaladsgerladlladdglHPnaaGyr 178
                      i+ +  + + +++a++   +  +++a++e++r+ a++++  f D      + ++  +  ++   + dg+H++  Gy+
     EGE24934.1 280 SAIMIVSSPEVLKNTAGSCGVRPPTLHAIQEVQRQTAQNKHTLFWDWqsamGGSCSMKQWMKSGKATKDGVHFTHLGYQ 358
                    ****99999999999999999**************************55553333333322333333344********8 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   2.6e-07    0.0015      54     173 ..     235     364 ..     187     369 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.6e-07
  Lipase_GDSL_3  54 vlaevdasvfvldllpN.....asaeeirerleyfvktlrkahPktpillvedlsttkglvdeklekeveaknkaleelvkklkkekekkly.... 140
                     la + +++ +l    N      sae i   l++ ++++r+a+P+  i++v +++  k++     + +   + +a++e+ ++  ++k++ ++    
     EGE24934.1 235 ELATIAPELIILAYGTNeaynnLSAERIATVLDERIEQIRQASPHSAIMIVSSPEVLKNTAGS-CGVRPP-TLHAIQEVQRQTAQNKHTLFWdwqs 328
                    5777788888888888877777*****************************988766555433.222222.2233444444433222222221111 PP

  Lipase_GDSL_3 141 ....lisskellgkdeeatvdgiHpsdlGllryadal 173
                          s k+   k+++at dg+H++ lG+++   ++
     EGE24934.1 329 amggSCSMKQ-WMKSGKATKDGVHFTHLGYQQLGRQM 364
                    1111233344.78999**************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2940.75
//
Query:       EGE24935.1  [L=237]
Description: 16S ribosomal RNA methyltransferase RsmE [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-38  131.6   0.0    3.2e-38  131.3   0.0    1.0  1  Methyltrans_RNA  RNA methyltransferase


Domain annotation for each model (and alignments):
>> Methyltrans_RNA  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.0   1.8e-42   3.2e-38       4     223 ..      21     235 ..      18     237 .] 0.92

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 1.8e-42
                      EHHHHHHHHTTTT--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEEEEE---SSSSEEEEEEE--SSHHHHHHHHHHHHTT-SEEEEEE-TT CS
  Methyltrans_RNA   4 tdeeahHlvkVlRlkegdeiklfdgdgkeyeaeieeiskkkvtvkilekeeenkespekitlaqalpkgdklelilqkatElGvseivpliser 97 
                      +++++ Hl++Vl+++ gd ikl+   g+ ++++i + ++++v ++ +  ++++++ + ++++++alp+++ l++++ ++t  Gv + v+++s r
       EGE24935.1  21 NQSTIVHLKTVLNVHHGDFIKLGKLGGNMGHGRIVHMDENQVILSEI-TLTKSPPCKLNLVVVLALPRPKVLRRLVMDMTAAGVRHMVFINSYR 113
                      457889************************************77766.56666667777*********************************** PP

                      SSS...HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHHHHHCSCCEE....EEEEETTSSEBGGGSSHCCHTHHCSEEEEEE--TT- CS
  Methyltrans_RNA  98 svvkldekkkdkklerwqkilieAaeQsgrtrlpevkepislkelleelkeadl....klildeeekksleelsekkkelkevkvlliiGPEGG 187
                      +  k+++ +   +  r+++ +ie+++Q   t+ p+++ ++++k ++++   +      ++++++ +++   +l++++      + +l++G EGG
       EGE24935.1 114 T-DKSYWSSPLLS--RLDEFVIEGLQQGIDTIAPQITLAKRFKPFVQDDLPSLIgdggAIVAHPYAEEHFGKLTQNQL-----PQVLVVGAEGG 199
                      *.9**99999977..********************************999987799999******9999888888776.....679******** PP

                      --HHHHHHHHHTTCEEEB-SSS---HHHHHHHHHHH CS
  Methyltrans_RNA 188 fsekEiellkeagfkpvsLgpriLRteTAalaalsa 223
                      f + Ei+ll + g+++ sLg+riLRte A+ a+l++
       EGE24935.1 200 FIPYEIQLLDSVGVQAASLGKRILRTEAAVNALLGR 235
                      ******************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1770.89
//
Query:       EGE24936.1  [L=435]
Description: 3-deoxy-D-manno-octulosonic-acid transferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-47  159.5   0.1    1.6e-46  158.2   0.0    1.7  2  Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase


Domain annotation for each model (and alignments):
>> Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   0.0   9.1e-51   1.6e-46       3     170 ..      42     214 ..      40     222 .. 0.90
   2 ?   -2.7   0.0      0.22     4e+03      15      39 ..     246     271 ..     227     281 .. 0.55

  Alignments for each domain:
  == domain 1  score: 158.2 bits;  conditional E-value: 9.1e-51
  Glycos_transf_N   3 lkerlglak..keke....kliwiHaaSvGEveaalpLiealrerkpelkillTttTptGaevakklla.....ervdhvylPlDlpaavrrfl 85 
                      l+er++     +  +     +iw+Ha+S+GE++ a pL+ +l+++  ++ +++T+tT+tG+e+a+kl+       rv h ++P+D+p++++ fl
       EGE24936.1  42 LNERFAKHYqpP--PvgrlGVIWCHAVSLGELNTAYPLLLKLLNH--GYGLWVTSTTQTGFERAAKLFDneirlGRVAHSFVPVDTPSVIDTFL 131
                      778887544331..2343456**********************88..699************************9******************* PP

  Glycos_transf_N  86 davkPdllilvetElWpnllaaakkrgipvilvnArlserslrryrrfkallrsllskfdlilaqseedaerlralgapeervev 170
                       +vkP +++++etElW+n+l+a++k+gi+++++nArl+++s+ +y++++++++ +++++d i+aq+  +a+r+ +lg     +  
       EGE24936.1 132 THVKPIAALFIETELWANTLYACRKHGIKTLMINARLTQKSYLGYAKIAKVSQTMMANLDGIIAQDASSAKRFGQLGRVY--IVQ 214
                      ****************************************************************************9654..555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.22
  Glycos_transf_N  15 ekliwiHaaSv.GEveaalpLiealr 39 
                      +++iw+ a S  GE   al+  ++++
       EGE24936.1 246 KTYIWVMASSHdGEECIALKAHQQFL 271
                      34466666665344444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3120.82
//
Query:       EGE24937.1  [L=865]
Description: aminopeptidase N [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-72  243.2   9.1    6.4e-72  242.6   9.1    1.3  1  DUF3458_C       Domain of unknown function (DUF3458_C) ARM re
    2.8e-49  167.7   0.2    6.1e-49  166.5   0.2    1.6  1  Peptidase_M1    Peptidase family M1 domain
    4.2e-18   65.6   0.0    9.5e-18   64.4   0.0    1.6  1  DUF3458         Domain of unknown function (DUF3458) Ig-like 
    1.1e-13   51.8   0.0    2.2e-13   50.8   0.0    1.5  1  Peptidase_M1_N  Peptidase M1 N-terminal domain
    9.7e-05   22.7   0.3      0.033   14.6   0.1    3.4  2  Peptidase_M61   M61 glycyl aminopeptidase
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.29   11.0   0.0    1.5  1  DUF1533         Protein of unknown function (DUF1533)


Domain annotation for each model (and alignments):
>> DUF3458_C  Domain of unknown function (DUF3458_C) ARM repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.6   9.1   2.2e-75   6.4e-72       1     317 [.     553     861 ..     553     863 .. 0.96

  Alignments for each domain:
  == domain 1  score: 242.6 bits;  conditional E-value: 2.2e-75
                 HHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHT-TTS-HHHHHHHTS---HHHHCTT-SS.B-HHHHHHHHHHHHHHHHH CS
   DUF3458_C   1 deelafLlahdsDafnRweagqrLalrvllalvaeeaalsealvealravLedealdpalkaeaLtlPseaelaeqlke.vdpdaihaarealrkalae 98 
                 de+la L+a++s++fnRw+a q L++r l   v++++ + + + +a+ +++ed   dp+l+a+++++Ps++ela +++e  dp  ++a r++l  ++a+
  EGE24937.1 553 DEDLASLVAFESEGFNRWQALQILMNRWLSGSVEDATLIISVIQKAVDELIED---DPMLAARLFDIPSQKELAMAYDEnYDPISVKARRDELIGKIAD 648
                 79*******************************98877777777799999998...9*********************966****************** PP

                 HTHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHSSSHHHHHHHHHHHTTSSSHHHHHHHHHHHHHCTTSHHHHHH CS
   DUF3458_C  99 aledellalyealaaegayspdaaaagrRaLknlaLsylaaaddeeaaelavaqfkaadnmTdrlaALaalvnsdlpereealadfyqrwkdealvldk 197
                  l ++ + +y++l  + ay+ +++a grR L+n++L++ ++a+de a+++a++q+++a++m++rl+AL a+ +++l++++++l+dfy+++++e+lv+d 
  EGE24937.1 649 GLLENAKLWYQKLPLQ-AYEDTPQARGRRLLRNVLLNLRLTAGDEMAHQDAYHQYDNASCMSERLGALMAMIEHNLDKKDSYLDDFYAKFSHEDLVIDA 746
                 ************9995.8********************************************************************************* PP

                 HHHHHHH--STTHHHHHHHHHTSTTTTTTSHHHHHHHHHHHH.T-HHHHT-TTSHHHHHHHHHHHHHHTT-HHHHHHHGGGGTTGGGB-HHHHHHHHHH CS
   DUF3458_C 198 WfalqAtspredtlervkallehpaFdlknPNrvrsLigaFaaanpaaFhaadGsGYafladqvleldaiNpqvAaRlvtaltrwrrydekrqalmkaa 296
                 Wf  qAt  ++  ++++++l+e+ ++d+++PNrvr  + a+a a+p++ + a  +G +++   v++ld +Npq+AaRl++al rw++++++++++++++
  EGE24937.1 747 WFVAQATP-DSTSVSQIASLMERTDYDWNTPNRVRTTLSALA-AKPVQLWTA--EGLDLYLSSVVRLDGSNPQLAARLLSALARWNTLTADKKSMAQEK 841
                 ******95.56699****************************.999999877..59******************************************* PP

                 HHHHHTSTT--HHHHHHHHHH CS
   DUF3458_C 297 LeriaaaeelSkdvrEivska 317
                 L  +  ++  Sk+v E ++++
  EGE24937.1 842 LAAV-TSQVSSKNVLEFLQNM 861
                 ****.56788******99876 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.5   0.2     2e-52   6.1e-49       3     211 ..     238     443 ..     236     450 .. 0.93

  Alignments for each domain:
  == domain 1  score: 166.5 bits;  conditional E-value: 2e-52
                   HHHHHHHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHHHH CS
  Peptidase_M1   3 levtkkllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEGfa 99 
                   +++ k ++++ e++++  Y+l+++++va  +f++gAMEn+gl +++ +++l  pe++++++   v++viaHE++H+W+Gn +t++ W +l L+EGf+
    EGE24937.1 238 MQALKDAMKWDEDNYGRAYDLDRYMIVATGQFNMGAMENKGLNIFNTSCVLSSPETTTDERSFLVKSVIAHEYFHNWTGNRITCRDWFQLCLKEGFT 334
                   5677899****************************************************************************************** PP

                   HHHHHHHHHHHSC.CCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE- CS
  Peptidase_M1 100 tyleylildklep.ewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefkyknae 195
                   ++ ++ +++++ +  ++  e++ +  +  +++eda + +hp+  + e+  ei+++++ + YeKGa+++rm++++lg+e+F++g  +Y+++++ ++++
    EGE24937.1 335 VFRDQSFSGDFRSkAVQRIEDV-AVLRAAQFAEDAGSLAHPV--RPESFVEINNFYTMTIYEKGAEIVRMIANFLGKEKFRQGSDEYFARYDGQAVT 428
                   **********999555556666.667778999**********..699999*********************************************** PP

                   HHHHHHHHHHCCCSCH CS
  Peptidase_M1 196 tedlwdaleealnkdi 211
                    ed+++a++ a +  +
    EGE24937.1 429 VEDFLSAMSVA-DARV 443
                   ********987.4444 PP

>> DUF3458  Domain of unknown function (DUF3458) Ig-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   3.2e-21   9.5e-18       1      95 []     454     550 ..     454     550 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 3.2e-21
                 S--EEEEEEEEETTTTEEEEEEEEE---BSSBSS-----EEEEEEEEET.TS-BECEEEEEEE-SSEEEEEEC---....S-EEEEESTT--SSSEEE- CS
     DUF3458   1 GtPevtvsesydeaaktytltlsQktpptagqkekkplviPiklallde.kGeelelekvlelteaeqsftfenva....ekpvpSllrdFSAPvkley 94 
                 GtP v+    y     ++ ++lsQkt++ ++ +   +l+iP+++a++d+ +Ge+l+ +++l lt+++++f+f++++    ++pv+S+lr+FSAPvk+++
  EGE24937.1 454 GTPVVSG--GYRVLGDKVIINLSQKTRHVPNYDAPVALPIPVDTAIFDSlTGEMLA-SRMLLLTTDNAQFEFDHIQlsdgAHPVVSVLRNFSAPVKIDF 549
                 8998876..67777789********************************9999999.******************88899****************997 PP

                 - CS
     DUF3458  95 d 95 
                 d
  EGE24937.1 550 D 550
                 5 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   7.2e-17   2.2e-13      90     186 .]     104     197 ..      41     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 7.2e-17
                     EEEEEE-BSSSSEEEEEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTS.EEEESSECCCEEEETTCEEEEEEEEEESBE CS
  Peptidase_M1_N  90 ieyegelndklaGlykstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkee.talSnmpeeeseklengqkiteFeqtpkms 183
                     +e++ + n++l+Gly+     +g    ++vTq+e++ +R+++   D+P+v+ ++t++++apk++ t+l+n++  es + ++++++t +++  k++
      EGE24937.1 104 VEISPQTNTTLEGLYQAG---TGD-DKMFVTQCEPEGFRKITFFPDRPDVLTEYTTRLEAPKHFkTLLANGNLVESGDVDENRHYTIWHDPTKKP 194
                     4555556999*****955...544.4899**********************************99****************************** PP

                     GGG CS
  Peptidase_M1_N 184 tYL 186
                     +YL
      EGE24937.1 195 SYL 197
                     **9 PP

>> Peptidase_M61  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.1e-05     0.033       4      25 ..     304     325 ..     302     398 .. 0.69
   2 ?    3.4   0.0     0.032        96      37      55 ..     792     810 ..     776     861 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
                    HHHHHHHHHTTBTTTB-BGGGS CS
  Peptidase_M61   4 gllaHEyfHsWnvkrirPaele 25 
                    +++aHEyfH W ++ri  ++  
     EGE24937.1 304 SVIAHEYFHNWTGNRITCRDWF 325
                    689************9887765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.032
                    THHHHTHHHHHHHHHHHHH CS
  Peptidase_M61  37 llwvaEGlTsYygdlllar 55 
                    +lw aEGl  Y+ +++ + 
     EGE24937.1 792 QLWTAEGLDLYLSSVVRLD 810
                    79**********9987654 PP

>> DUF1533  Protein of unknown function (DUF1533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.8e-05      0.29       7      33 ..      66      91 ..      64      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.8e-05
     DUF1533  7 aIsevtvNGkklennkyslssigkLkl 33
                + +++ +NG++le ++y l+++g L++
  EGE24937.1 66 KLKSIHLNGQELESQAYHLDKEG-LTI 91
                5799*******************.998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 6055.16
//
Query:       EGE24938.1  [L=171]
Description: peptidoglycan-associated lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-22   78.0   0.1    7.6e-22   77.5   0.1    1.2  1  OmpA      OmpA family
  ------ inclusion threshold ------
      0.067   13.3   0.0       0.11   12.6   0.0    1.3  1  MLTR_LBD  MmyB-like transcription regulator ligand binding do


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.1   8.5e-26   7.6e-22       1      95 []      70     165 ..      70     165 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 8.5e-26
                 .B-TTS--B-GGGHHHHHHHHHHHH.S-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk.kpeqkitveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkarnr 95 
                 yF+++s e++p+a   ld+ a++l+ ++  ++ v Ghtd++gs+e+n+ L ++RA aV+nyl  +g+ ++ +++ ++G+erpi+ ++++e+ ++nr
  EGE24938.1  70 YFDFDSDEIKPQAAAILDEQAQFLTtNQTARVLVAGHTDERGSREYNMSLGERRAVAVRNYLLGKGINQASVEIISFGEERPIAFGTNEEAWSQNR 165
                 8************************777788*********************************************************99999997 PP

>> MLTR_LBD  MmyB-like transcription regulator ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.2e-05      0.11      11      50 ..      77     117 ..      76     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
    MLTR_LBD  11 alepvPAlVldrrwdvlaaNraaraLlgd.paalpeperNl 50 
                  ++p +A++ld + + l +N+ ar L+++  ++++++e N+
  EGE24938.1  77 EIKPQAAAILDEQAQFLTTNQTARVLVAGhTDERGSREYNM 117
                 67899************************655556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1383.37
//
Query:       EGE24939.1  [L=192]
Description: hypothetical protein EA1_06651 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-07   30.1   0.0    1.2e-06   28.6   0.0    1.7  2  ACPS        4'-phosphopantetheinyl transferase superfamily
  ------ inclusion threshold ------
       0.11   12.4   0.9        1.4    8.9   0.0    2.2  2  IQ_SEC7_PH  PH domain


Domain annotation for each model (and alignments):
>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.28   2.5e+03      60      70 ..      35      45 ..      19      88 .. 0.52
   2 !   28.6   0.0   1.3e-10   1.2e-06       3      99 ..      95     182 ..      93     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.28
                HHTTS-SSSS- CS
        ACPS 60 Kalgpglrkll 70
                Ka ++++r+ll
  EGE24939.1 35 KAQSACVRSLL 45
                44444444422 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.3e-10
                 EEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-SSSS--GGG-EEEE-TTS-EEEE-S-SSEEEEEE CS
        ACPS   3 GiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpglrklldfksievledstgrptlellseakkkawk 99 
                  iDie        v+    ++++r+f+++E+ ll + ++ +r++l+  lW +KE+ +K +  +l++ ++ + +++  ++ +  +++l+++  +++++
  EGE24939.1  95 AIDIE--------VNDIKYSVVERYFHPNEIYLLTQFSSTDRQQLINILWRLKECRIKLIQDQLYTGMGAD-MSCYLTDIRPNSINLIKNNDDYFYN 182
                 58999........44566789***************9999999*******************995544444.4666666666666666666666655 PP

>> IQ_SEC7_PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.02   1.8e+02      37      84 ..      17      67 ..      12      94 .. 0.62
   2 ?    8.9   0.0   0.00016       1.4      66     115 ..      99     148 ..      92     152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.02
  IQ_SEC7_PH 37 vflFndlllvtklvkkkkssvtysyrksvtLlglkvslf...eneyypygi 84
                ++ F  +++ ++   k+k++++  +r+ ++++  ++ ++   + + +py i
  EGE24939.1 17 IIAFAKMVQTSRQRLKQKKAQSACVRSLLQITMHRFDIVgefHDHAHPYYI 67
                677888888888777777776666666666666655543322444444443 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00016
  IQ_SEC7_PH  66 tLlglkvslfeneyypygielvsavpgaeskvlitfnakneedrkkfved 115
                 ++  +k s++e+  +p+ i l ++++++++++li++  + +e r k+++d
  EGE24939.1  99 EVNDIKYSVVERYFHPNEIYLLTQFSSTDRQQLINILWRLKECRIKLIQD 148
                 566789999****************************9999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 1680.51
//
Query:       EGE24940.1  [L=252]
Description: outer membrane protein G1b [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.028   14.2   2.9      0.079   12.8   2.9    1.8  1  BppL_N         Lower baseplate protein N-terminal domain
       0.11   12.2   2.7         20    4.9   2.7    3.2  1  OmpA_membrane  OmpA-like transmembrane domain
       0.16   12.0  10.2       0.43   10.7  10.2    1.9  1  OMP_b-brl      Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> BppL_N  Lower baseplate protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.9   1.3e-05     0.079       3      19 ..      21      37 ..      20      41 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
      BppL_N  3 ddvVtltGdqtItGtKT 19
                ++vVt+tG ++++Gt T
  EGE24940.1 21 ANVVTNTGATVVDGTRT 37
                79************987 PP

>> OmpA_membrane  OmpA-like transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   2.7    0.0033        20     119     179 ..     160     252 .]      25     252 .] 0.51

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0033
                    .EEEEEEEEEEEEEEEEEEEETTEEE..EEEEEEESSSSSBTSTTS................................-S-EEEEEEEEEEEE CS
  OmpA_membrane 119 kknhdtkvslllavGveyaitpelal..rleYqylnnvgdlrkaak..............................kykpdievvslglsyrf 179
                    k +h++k ++ l +G+  ++  ++ +   +   yl +v  +  a++                              ky+ +  ++ +g++yrf
     EGE24940.1 160 KLEHRNKLAPYLTLGFRPNLHSNWGVfgEVGAAYLGKVDATVDAQNptksvtatdsktqetvikiakqaerdiedkKYANWFPIAKVGVTYRF 252
                    334444444444444444444444431122223444433333222233334444444444444444444444444466666666666666666 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  10.2   7.2e-05      0.43       3     160 ..      11     202 ..       9     252 .] 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.2e-05
   OMP_b-brl   3 llllaalsaaaaaassfggfyvggglglskvkvdgvgsds..g.fgfgvgagyefndnvgvegglsysgdkdysgsgktdikinllsvpvnagyafnls 98 
                 +++l++ sa+a   ++ g   v+g  ++ ++ v+  ++++  g  g+g+  g  +nd v  e++++++g++ +++     i+ n+++ +vn+ +  ++s
  EGE24940.1  11 AAVLLSTSAMANVVTNTGATVVDGTRTIFSTLVKPAAVSAevGtLGYGANIGWAVNDTV--ELQAGWAGGNIAKS-----INDNFNANGVNYQLETDFS 102
                 55566666666666654444455665555555543333332232466666666667776..77777777655444.....6666666666666655553 PP

   OMP_b-brl  99 dsvlpyggaGlg.....................ytkvevdvsgng.......................asdsdtdfglglgaGveyaladnwslkaeYr 153
                 +   py+ga++                      +         n+                       + + +++ + +l +G++ +l++nw + +e  
  EGE24940.1 103 N---PYLGAQVRpaanwftvgtgiivpkndikvR--------SNNttdgvfrvdgkdykqsdvgqltgKLEHRNKLAPYLTLGFRPNLHSNWGVFGEVG 190
                 3...555555555555666666677776655331........222223445777888999999999999*****************************9 PP

   OMP_b-brl 154 ytdlks.....d 160
                  + l++     d
  EGE24940.1 191 AAYLGKvdatvD 202
                 998876533331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1893.82
//
Query:       EGE24941.1  [L=268]
Description: hypothetical protein EA1_06661 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.043   14.1   0.1      0.094   13.0   0.1    1.6  1  FlhD      Flagellar transcriptional activator (FlhD)
      0.053   13.2   4.0      0.096   12.4   4.0    1.3  1  YjcZ_2    Family of unknown function


Domain annotation for each model (and alignments):
>> FlhD  Flagellar transcriptional activator (FlhD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.1e-05     0.094      31      84 ..      60     114 ..      40     123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
        FlhD  31 aalfrLgiseeva.dllakLslaqlvklassnqllcrfrlddeallslltneske 84 
                 +  ++L i ++ a   l +Ls++ lv++a++++ l+++  d + l+++ t +s +
  EGE24941.1  60 QNQYKLFIAADKAvMNLWQLSPKHLVHMAQTDTWLASLLSDKNDLTKIYTAQSCN 114
                 567888888776625699********************99999999998887655 PP

>> YjcZ_2  Family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   4.0   1.1e-05     0.096       4      18 ..      24      38 ..      23      40 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.1e-05
      YjcZ_2  4 sGFALIVVLFILLII 18
                sGF+L+VVL++LL I
  EGE24941.1 24 SGFVLLVVLVVLLFI 38
                8************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2106.67
//
Query:       EGE24942.1  [L=333]
Description: type IV pilus assembly protein PilW [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00013   21.3   2.7    0.00026   20.4   2.7    1.5  1  N_methyl  Prokaryotic N-terminal methylation motif


Domain annotation for each model (and alignments):
>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   2.7   1.4e-08   0.00026       3      26 ..       7      30 ..       5      31 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.4e-08
    N_methyl  3 kqrGFTLiElLvalaIlaillaaa 26
                +q+G+TL El+val +++ ++++a
  EGE24942.1  7 NQQGMTLMELVVALGLGSFIVLMA 30
                8*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2404.18
//
Query:       EGE24943.1  [L=186]
Description: type IV pilus biogenesis protein PilV [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-05   24.2   4.1    2.8e-05   23.5   4.1    1.4  1  N_methyl  Prokaryotic N-terminal methylation motif
     0.0031   17.6   0.1     0.0042   17.1   0.1    1.1  1  DUF4211   Domain of unknown function (DUF4211)
  ------ inclusion threshold ------
       0.21   12.3   0.4       0.21   12.3   0.4    2.0  2  LTXXQ     LTXXQ motif family protein


Domain annotation for each model (and alignments):
>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   4.1   4.7e-09   2.8e-05       3      26 ..      14      37 ..      12      38 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 4.7e-09
    N_methyl  3 kqrGFTLiElLvalaIlaillaaa 26
                ++ GF LiE+L++l++l+++++++
  EGE24943.1 14 NEGGFGLIEVLISLLLLSVVALGL 37
                789*******************98 PP

>> DUF4211  Domain of unknown function (DUF4211)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   7.1e-07    0.0042      55     123 ..      67     135 ..      55     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.1e-07
     DUF4211  55 fllafeerkdelylvalkklddevegladslvsssaWkpefkkaLearPelditelease.ekkCdAcnr 123
                  +++f+ +++++y ++l+++ +  +++ +s + s +    + +++++rPe +++e  +s   ++ +A  r
  EGE24943.1  67 AVRSFTPEQKQIYIQTLQRIAQTAQSRSESDMNSYRIA-AYATTIRCRPECHLNEQAQSLaIQSAQAAAR 135
                 5678999***************************9995.7************988877655555555555 PP

>> LTXXQ  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   3.5e-05      0.21      63      99 ..      43      78 ..      39      83 .. 0.86
   2 ?   -0.4   0.3      0.31   1.9e+03      40      40 ..     115     115 ..      79     139 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.5e-05
                HHH..HHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHH CS
       LTXXQ 63 rlarmeamlearleavkkraealkqfyavLtpEQkak 99
                rl  + ++++ rl+av+ +a+  +++ +++tpEQk+ 
  EGE24943.1 43 RLLVQTKHADLRLQAVQLMANDYHAV-RSFTPEQKQI 78
                66677899*************99987.579*****96 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.31
                 - CS
       LTXXQ  40 k 40 
                  
  EGE24943.1 115 E 115
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1311.00
//
Query:       EGE24944.1  [L=282]
Description: competence protein ComF [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00038   19.9   0.0    0.00061   19.3   0.0    1.2  1  UPRTase       Uracil phosphoribosyltransferase
      0.001   18.6   0.0     0.0016   17.9   0.0    1.2  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.046   13.2   0.1      0.087   12.3   0.1    1.4  1  PRTase_2      Phosphoribosyl transferase


Domain annotation for each model (and alignments):
>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     1e-07   0.00061     114     161 ..     224     268 ..     201     275 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1e-07
     UPRTase 114 kLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvla 161
                  L ++i +r++++ D vi TG+++aa+ +lL+++    ++I+++++ +
  EGE24944.1 224 YLCQQIPNRQIIIFDDVITTGATVAAVANLLIRHR---QDIRLIAICM 268
                 3779999************************9954...4566655544 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.7e-07    0.0016      49     116 ..     184     260 ..     171     276 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.7e-07
                   HHS....TT-EE..-EEEEEE-TTT--EE...........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BS CS
  Pribosyltran  49 deL....evpla..yvrkvkyrpdgseeaargssdes...rlledpagkkVliVDDildtGgTllaalelLkekgpe 116
                   + L     +pl   + r+  +r++++ + ++ ++  +    l   + ++ ++i DD+++tG T+ a+++lL +++  
    EGE24944.1 184 KFLawhwQLPLWqgVARHDGKRHQRGLTRHERLVNTQtdfYLCQQIPNRQIIIFDDVITTGATVAAVANLLIRHRQD 260
                   444444455543336777777777777777777766677777788899*********************99888765 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.5e-05     0.087     121     153 ..     231     263 ..     212     274 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
    PRTase_2 121 akelvLvDDEistGktalnliralqeklprkry 153
                 ++++++ DD i+tG t++++++ l ++ ++ r+
  EGE24944.1 231 NRQIIIFDDVITTGATVAAVANLLIRHRQDIRL 263
                 589*****************9999888766444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2029.90
//
Query:       EGE24945.1  [L=442]
Description: outer membrane phospholipase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-86  289.7   0.2    3.2e-86  289.1   0.2    1.2  1  PLA1      Phospholipase A1
  ------ inclusion threshold ------
      0.084   12.5   0.0       0.15   11.7   0.0    1.4  1  VasI      Type VI secretion system VasI, EvfG, VC_A0118


Domain annotation for each model (and alignments):
>> PLA1  Phospholipase A1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.1   0.2   3.6e-90   3.2e-86      14     257 .]     185     436 ..     174     436 .. 0.95

  Alignments for each domain:
  == domain 1  score: 289.1 bits;  conditional E-value: 3.6e-90
                 STT-BEESS--EEE.EEEESS--TTTTTTSCTGGG-.....-SEEEEEEEEEEEEEEETTTSTTEEEEEEEEEEEEE-TT-GGGTS-EEEEEEEEEEEE CS
        PLA1  14 ntfsltpykpnyllpvtytsspnkkplseaeeeekee....kkveakfQlSlktklaedllgeksdlwlayTqksfWqvynseeSrpfretnyePelfl 108
                   +s +p++p+y+lp+ ++ +pn++p ++++e+++ +    +  e+kfQ+S+k+k aedl+g++sdlw++yTq+s+Wq++n ++Srpfr  +y+Pe+fl
  EGE24945.1 185 PLWSSRPHNPMYVLPIFMHGKPNRSPNTPSHEAKQFTpnefRAPELKFQVSVKVKAAEDLWGTDSDLWFGYTQQSHWQIFNGKNSRPFRVHDYQPEIFL 283
                 456779********************99999888877888999******************************************************** PP

                 EEEEEEEE.TTEEEEEEEEEEEEEE----TTS--EEEEEEEEEEEEETTEEEEEEEEEEES--......TTSTTHHHHH-SEEEEEEEEET.TEEEEEE CS
        PLA1 109 slpldlkl.lglrlrllelglnHqSNGrseplSRSwNrvyleavfekgnlavslkpwyripeseke...ddNpdiedylGrgelklayklk.khelslt 202
                 ++p+  +l    ++r++++g++H+SNG+s++lSRSwNr yl+a++e++nl+v+ ++w ri ++ +    ddNpdi dy+G+g++++ y+l+ k+++s t
  EGE24945.1 284 TQPVYSDLpWDGKVRMIGMGAVHHSNGESAKLSRSWNRAYLMAGMEWKNLTVMPRIWGRIFKEGSGsqpDDNPDILDYYGYGDVRFLYQLEnKSNISGT 382
                 ********889*************************************************988766789********************99899***** PP

                 EEEETT.TTEEEEEEEEEEESSSSEEEEEEEEEEE-SSSTTTT-EEEEEEEEEES CS
        PLA1 203 lrnnlrsenkgaveldysfplsknlrgyvqlfnGYGesLidYnkkqtrlgvGisL 257
                 +r+n r + kga++ldy +pl k ++gy+q+f+GYG+sLidYn++ t++gvG++L
  EGE24945.1 383 VRYNPR-SGKGALQLDYVYPLGKGISGYFQIFQGYGQSLIDYNHEATSFGVGLML 436
                 ******.9*********************************************97 PP

>> VasI  Type VI secretion system VasI, EvfG, VC_A0118
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.6e-05      0.15       2      35 ..      89     119 ..      88     162 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.6e-05
        VasI   2 CrkitsrleRLaCyDavfetpiekaaavakensa 35 
                 C + ++ + RLaCyD +++ ++    av k++++
  EGE24945.1  89 CSALNQDIMRLACYDTLVHGETP---AVIKTKRS 119
                 999**************975533...22233332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3381.01
//
Query:       EGE24946.1  [L=151]
Description: hypothetical protein EA1_06686 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.022   14.4   2.1      0.028   14.1   2.1    1.2  1  DUF4131   Domain of unknown function (DUF4131)
       0.13   11.9   3.1       0.24   11.0   3.1    1.4  1  Wzy_C     O-Antigen ligase


Domain annotation for each model (and alignments):
>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.1   3.1e-06     0.028       5      57 ..      22      69 ..      19      98 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-06
     DUF4131  5 lalvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnan 57
                +++ +++lll +l+++++l        v+ ++++l+l+a+++f++  +++ a+
  EGE24946.1 22 FWWSMILLLLGVLVAIICLI-----APVFYAIGALALFAVVVFVFNIQRQKAK 69
                67888888888888888874.....4667777777777888777777776665 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.1   2.7e-05      0.24      20      99 ..      27      95 ..       9     102 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.7e-05
       Wzy_C 20 igllvalivlliifykrripfllllgilvgvilliilfv..........lstnletlknitkafgkldkkkgkdksgssRlyiwkralpl 99
                i                    llllg+lv++i+li++++          +    +++++++   ++    +g+ k +s R++i +++l l
  EGE24946.1 27 I--------------------LLLLGVLVAIICLIAPVFyaigalalfaVVVFVFNIQRQKAKTCHMFS-QGRLKITSKRFEIHNKSLTL 95
                3....................445555555555555555555444444444455555555555565555.9************9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1292  (0.072062); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1114.24
//
Query:       EGE24947.1  [L=238]
Description: ribonuclease PH [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-24   84.6   0.0    1.3e-23   84.0   0.0    1.3  1  RNase_PH    3' exoribonuclease family, domain 1
    3.9e-08   33.2   0.1    8.1e-08   32.2   0.1    1.6  1  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   1.4e-27   1.3e-23       1     129 [.      10     140 ..      10     141 .. 0.94

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 1.4e-27
                 EEEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C.......S...HHHHHHHHHHHHHHCCTC-CCGC CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasger....rregrpsdeeielsrlleralrpsillekk 95 
                 elR++++     ++a+GS+++ +Gdtkvl++ + +  + p++ + + +g+l++e+ + p a+g+r      +g++s +++e++rl+ r+lr+++ l+k 
  EGE24947.1  10 ELRPIHFIRQYTKHAEGSVLVCFGDTKVLCTASIEAGV-PRWLKGQGKGWLTAEYGMLPRATGTRtqreAARGKQSGRTQEIQRLIGRSLRAMLDLSKL 107
                 79**********************************99.8888766779****************987644478999999******************* PP

                 CTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCT CS
    RNase_PH  96 pkstididitvlssdggslldalinaaslALada 129
                  ++ti+id+ v+++dg ++  a+i +a +AL+da
  EGE24947.1 108 GENTIYIDCDVIQADG-GTRTASISGAAVALIDA 140
                 ****************.***************98 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1     9e-12   8.1e-08       2      65 ..     158     222 ..     157     224 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 9e-12
                 --EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC.EEHHHHHHHHHHHH CS
  RNase_PH_C   2 pviavtvgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsq.ldeetlleaielAk 65 
                 +v+av+vg+  + ++lD+++ E++ ++ dl+++++  +  + ++ + + + +++ +  ++++lA+
  EGE24947.1 158 LVAAVSVGVNQGRVLLDLDYAEDSTCDTDLNVVMTQAGGFIEIQGTAEEKpFTRAEANAMLDLAE 222
                 89**************************************9***9988888************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1712.11
//
Query:       EGE24948.1  [L=568]
Description: putative acyl-CoA synthetase (long-chain-fatty-acid-CoA ligase) FadD/FadK [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.7e-103  346.4   0.0   2.2e-103  346.1   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    9.3e-23   81.0   1.5    4.7e-20   72.3   0.3    2.5  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.1   0.0  2.4e-107  2.2e-103       1     422 [.      41     472 ..      41     473 .. 0.89

  Alignments for each domain:
  == domain 1  score: 346.1 bits;  conditional E-value: 2.4e-107
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvl 98 
                  ++++ a++ ++va++    ++++TYr+ld+ ++++Aa+L+slG+ kgd+Va+++pn +++ +a++ai++aG+++v +np +t+ el+++l+dseak+l
   EGE24948.1  41 FDQAFARFGNQVAFTC--MDKSITYRQLDNYSRQMAAYLQSLGLVKGDKVAVMMPNILQYPIAMIAIVRAGLTLVNVNPLYTSNELEHQLNDSEAKAL 136
                  566779999*****99..89****************************************************************************** PP

                  EETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.......................-TSCCCS-BTTSEEEEEEE--SSSS CS
  AMP-binding  99 iatvdselleklleaaakleavklvivldadellkeeelkeeeeseekae.......................kpeeeeelkpddlayiiYTSGTTGk 173
                  +  + ++ ++  +++  k  +v++viv + +++l  + +  ++  +++++                       +    ++l  dd+a+++YT+GTTG 
   EGE24948.1 137 F--IVENFAHTFEKVVNK-GQVRHVIVASLGDMLGLKGFLVNAVVRHVKKmvpewnipghvsfkdalnkvpigNY-NRPNLALDDIAVLQYTGGTTGV 230
                  *..776778888888876.5777777777777777766666666666663567889999*************733.445799**************** PP

                  -EEEEEEHHHHHHHHHHHH..HHHCSCCTT...T-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCH.HHHHHHHHHHHT-SEEEEEHHHHH CS
  AMP-binding 174 PKGVmlshrnlvanvaslk..letrfklke...ddvvlsilplahifglilelllallsGatvvllpkdaald.pklllelieklkvtviagvPrvle 265
                   KG+ml+hrnl++nv +++  l+  f+  +   ++ + + lpl+hif+++++ ll +  G+++ l+++   +d p +l+++ +k+k+ ++++v+++++
   EGE24948.1 231 AKGAMLTHRNLASNVEQCApfLSLVFSK-DnlsGQYIAVALPLYHIFSFTACGLLGMKMGFSMLLITNP--RDfP-ALCKDYAKYKPVFFPAVNTLFN 324
                  *****************99975555442.23436666777*************************9955..4534.57799999************** PP

                  HHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTS CS
  AMP-binding 266 allesgalkaakkakdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdge 363
                   l++++ ++    + d s l+l l gg ++ +++++++++l+g+ ++egYGl+Et++v+t l++++   ++g++G p+p +++ki+D+e g++++ ge
   EGE24948.1 325 GLVHHEGFR----SLDHSNLKLSLGGGMSVLSDTAKAWERLTGNYIIEGYGLSETSPVLT-LNPPGG--YTGKIGIPIPATDIKILDDE-GNELAMGE 414
                  ****77776....448888*****************************************.776666..799****************9.999***** PP

                  EEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 364 eGellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                   Ge++ +gp++m gY+++ ++t+++++ +++++rTGD+g++d++G ++iv+Rkkd+i +
   EGE24948.1 415 AGEICAKGPQIMVGYWNRLDETEKVMT-KDGFFRTGDIGVMDDRGFIKIVDRKKDMILV 472
                  **************************9.767***********99*************76 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0011       9.6      26      73 ..     153     204 ..     147     207 .. 0.72
   2 !   72.3   0.3   5.2e-24   4.7e-20       1      76 []     481     555 ..     481     555 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0011
                    S---EEEEE.E------.....HHHHHHHHHHHHT-TTTS-SEEEE-S---B-T CS
  AMP-binding_C  26 GealvafVv.lkdgsea.....leeeLkahvrkelgpyavpkkvvfvdelpktr 73 
                    G++  ++V  l  g  +     l +++++hv+k ++++  p +v f d+l k  
     EGE24948.1 153 GQVRHVIVAsL--GDMLglkgfLVNAVVRHVKKMVPEWNIPGHVSFKDALNKVP 204
                    55544444433..3111224457899************************9966 PP

  == domain 2  score: 72.3 bits;  conditional E-value: 5.2e-24
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evE ++++hp+V e++V+Gvpd+  Ge++++fVv k +++++++e++a+++++l  y++pk+++f++elpk   GK
     EGE24948.1 481 EVEDIITAHPKVIECGVIGVPDDHSGEVVKVFVVKK-DPSLTADEVRAWAKENLTGYKRPKYIEFISELPKSNVGK 555
                    8*********************************97.445689*****************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4234.78
//
Query:       EGE24949.1  [L=561]
Description: putative acyl-CoA synthetase (long-chain-fatty-acid-CoA ligase) FadD/FadK [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-104  349.9   0.0     2e-104  349.5   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    1.2e-23   83.9   0.7    1.2e-20   74.2   0.2    2.6  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
       0.15   12.1   0.1        0.3   11.1   0.1    1.4  1  DUF2481        Protein of unknown function (DUF2481)


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.5   0.0  3.3e-108    2e-104      15     422 ..      55     469 ..      41     470 .. 0.89

  Alignments for each domain:
  == domain 1  score: 349.5 bits;  conditional E-value: 3.3e-108
                  EECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHH CS
  AMP-binding  15 vdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklle 112
                  ++   g ++ Y eld  ++++A +L+slG+kkgd+Va+++pn+p++++++++i++aG ++v +np +ta+el+++l+dseakvl+  + ++ ++  ++
   EGE24949.1  55 TF--MGVHIGYDELDGISQNIAGYLQSLGLKKGDKVAVMMPNTPQYLAVMIGIVRAGYILVNVNPLYTAHELEHQLNDSEAKVLF--IVENFAHTFEK 148
                  45..678999***************************************************************************..76677888888 PP

                  HHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS....................-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHH CS
  AMP-binding 113 aaakleavklvivldadellkeeelkeeeeseekae....................kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvas 190
                  +  k  + ++vi++  +++ + + l +++  +++++                     p +++++  dd+a+++YT+GTTG  KG+ml+h+nl+anv +
   EGE24949.1 149 VVNK-GQIQQVIITGIGDMMRLKGLLINAVVRHVKKmvpnycipnkikfkdilnkkYPYTKPSVGLDDIAVLQYTGGTTGVAKGAMLTHGNLIANVEQ 245
                  8876.5777777788888888888888888888874567889999********9995556668999******************************** PP

                  HH..HHHC.SCCTT.T-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT CS
  AMP-binding 191 lk..letr.fklke.ddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlss 284
                  +   ++   +k ++ ++ + + lpl+hif++ + ++l +  G+++ l+p+  +ld   l +++ k++++++++v+++++al++++ +k    + d s 
   EGE24949.1 246 CTtyVKSGfEKSHQhGEYMAVALPLYHIFSF-MVTMLGMKMGFALLLIPNARDLD--DLTKQFGKYRPQFFPAVNTLFNALAHHDGFK----SLDHSN 336
                  9765444443333346666777********9.99***************887766..5889**********************88888....458888 PP

                  -SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-H CS
  AMP-binding 285 lrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkp 382
                  l++ l gg ++ p++++++++++g  ++egYGl+Et++v+t +++ ++  ++g++G p+p +++ ++D+e g+ v++ge Ge++ +gp+vmkgY+++p
   EGE24949.1 337 LKVSLGGGMSVLPSTADAWEKITGSYIIEGYGLSETSPVLT-FNPLGS--YTGKIGIPFPSTDILLLDDE-GNQVAQGEAGEIVAKGPQVMKGYWNQP 430
                  *****************************************.665555..799****************9.999************************ PP

                  HHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 383 eataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  e+ta+a++  ++++rTGD+g++de+Gy++iv+Rkkd+i +
   EGE24949.1 431 EETARAMT-ADGYFRTGDIGVMDENGYFKIVDRKKDMILV 469
                  *******9.657**************************76 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0015       8.8      42      71 ..     173     202 ..     148     204 .. 0.82
   2 !   74.2   0.2     2e-24   1.2e-20       1      76 []     478     552 ..     478     552 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0015
                    HHHHHHHHHHHHT-TTTS-SEEEE-S---B CS
  AMP-binding_C  42 leeeLkahvrkelgpyavpkkvvfvdelpk 71 
                    l +++++hv+k ++ y  p+k++f d l k
     EGE24949.1 173 LINAVVRHVKKMVPNYCIPNKIKFKDILNK 202
                    7789********************998877 PP

  == domain 2  score: 74.2 bits;  conditional E-value: 2e-24
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    evE++++sh +V e++V+Gvpde  Ge+++af+v k ++e++e+++k +++++l  y++pkk+ f+delpk   GK
     EGE24949.1 478 EVEEVIASHSGVLECGVIGVPDEHSGEVVKAFIVKK-DPELTEADIKTWAKQNLTGYKRPKKIAFLDELPKSNVGK 552
                    8*********************************97.556789*****************************9998 PP

>> DUF2481  Protein of unknown function (DUF2481)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     5e-05       0.3      50     113 ..     140     201 ..     110     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5e-05
     DUF2481  50 tywtktfdrivkkkkwaeitirefadl.rnagltcyaiaehfkvskavvfnytqrnkkeyyqifd 113
                   +++tf+++v+k +  ++ i  + d+ r  gl   a+  h+k    +v ny   nk ++ +i++
  EGE24949.1 140 ENFAHTFEKVVNKGQIQQVIITGIGDMmRLKGLLINAVVRHVK---KMVPNYCIPNKIKFKDILN 201
                 46789********************964889********9975...6899******999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3869.93
//
Query:       EGE24950.1  [L=40]
Description: hypothetical protein EA1_06706 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 318.52
//
Query:       EGE24951.1  [L=420]
Description: phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-68  228.9   1.1    4.2e-68  228.9   1.1    1.7  2  DFP           DNA / pantothenate metabolism flavoprotein
    2.6e-46  157.2   0.5    4.6e-46  156.4   0.1    1.6  2  Flavoprotein  Flavoprotein
  ------ inclusion threshold ------
       0.36   11.5   2.0       0.81   10.4   0.1    2.6  3  CW_binding_2  Putative cell wall binding repeat 2


Domain annotation for each model (and alignments):
>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.37   2.2e+03      34      56 ..      33      55 ..      30     108 .. 0.52
   2 !  228.9   1.1   6.9e-72   4.2e-68       2     186 .]     200     384 ..     199     384 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.37
                HHHHHHHHTT-EEEEEE-S-SS- CS
         DFP 34 alAeaaaarGaeVtlvsgpvsle 56
                +lA+ +++ G +V++     + e
  EGE24951.1 33 MLARLLIKSGCQVRVMMTAGACE 55
                57777777777777765443222 PP

  == domain 2  score: 228.9 bits;  conditional E-value: 6.9e-72
                 TT-EEEEEES-EEEECCTTEEEEE----HHHHHHHHHHHHTT-EEEEEE-S.-SS---TT-EEEE--SHHHHHHHHHHHHTT-SEEEE---S--EEES- CS
         DFP   2 egkkvlvtaGpTrEaiDpVRfisNrSSGkmGyalAeaaaarGaeVtlvsgp.vsletpegvevvkvesaeemleaveealkeadivimaAAvaDyrpke 99 
                  gk+v++taG+T+E+iDpVRf+sN+S+GkmGyalA+a++++Ga+V lvsg+ vsl+tp gv++++v +ae+ml+ + + +++adi+i+aAAvaD++ ++
  EGE24951.1 200 LGKTVVITAGATVEPIDPVRFLSNHSTGKMGYALANACYHAGADVILVSGKhVSLKTPFGVRRLDVGTAEQMLKVCLSVCQKADIFIAAAAVADFKAAS 298
                 589************************************************67********************************************** PP

                 ------------..----EEE---HHHHHHHC-S.S-EEEEEEE-SS-HHHHHHHHHHHTT-SEEEEEEGGGTTGGG-SS-EEEEE. CS
         DFP 100 aaeeKikkeeeeeeltleleknpdilaelaekkkkkqllvGFaaeteellenareklerkgldlivaNdvskeeagfgsdenevtll 186
                 +a++Kikk+++++++tl+l knpd+la++  ++ ++ ++vGFaaet+++ + a++kl++k+ld+i++Ndvs+++ gfgs++n++t++
  EGE24951.1 299 VADHKIKKTKDQQTMTLQLIKNPDVLATIC-HTYPDLICVGFAAETQDANNCAKSKLAAKQLDMIAVNDVSDKTIGFGSENNAMTVF 384
                 *****************************5.6668789*********************************************9985 PP

>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.1   7.7e-50   4.6e-46       2     155 ..      17     187 ..      16     189 .. 0.96
   2 ?   -3.6   0.0       1.3     8e+03      94     111 ..     276     293 ..     261     314 .. 0.55

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 7.7e-50
                   EEEEEE-SSCGGGCHHHHHHHHHHTTEEEEEEESCHHHHCCHHGGS..................TCSSHHHHHHCTTESEEEEEEEEHHHHHHHHTT CS
  Flavoprotein   2 killgiTGsvaaikalellekLkkegievqvvltkaAkkfiskeklklaa..............redpilhielrrwadllviaPasantlakianG 84 
                   kill++TG++aa+k + l + L+k+g++v+v++t+ A +fi+  +l+++a               e+ + hi l++wadl+v+aPasant+ak+a G
    EGE24951.1  17 KILLAVTGGIAAYKSAMLARLLIKSGCQVRVMMTAGACEFIT--PLTFQAltgqavhtklldetAERGMGHITLAKWADLVVVAPASANTIAKLAGG 111
                   8*****************************************..88888888999********99999***************************** PP

                   --SSHHHHHHHTHCCTTEEEEE.--HHCCTCSTCHHHHHHH.HT.....................GHHHHHHHHHHC CS
  Flavoprotein  85 iadnlltlilratakkpiliaPamnpamyenpqtlknlekl.eegvtvikPse.....gdigkgkmaeieeivgkil 155
                   +adnl+t++ +at+ +piliaPamn +m++n ++++nl+kl ++g++++ P++     gd+g+g+++e+e++ ++il
    EGE24951.1 112 FADNLVTTVCLATD-APILIAPAMNQQMWANAIVQDNLKKLrQFGYHIMTPDSgeqacGDVGLGRLPEPEDLCQQIL 187
                   *******9997766.**************************66*********889*****************99987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.3
                   HHTHCCTTEEEEE.--HH CS
  Flavoprotein  94 lratakkpiliaPamnpa 111
                   l + +k+ i+ia a+   
    EGE24951.1 276 LSVCQKADIFIAAAAVAD 293
                   433444555555544433 PP

>> CW_binding_2  Putative cell wall binding repeat 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00014      0.81      11      44 ..     102     135 ..      86     210 .. 0.80
   2 ?   -2.6   0.0       1.5   9.2e+03      25      44 ..     232     250 ..     225     257 .. 0.63
   3 ?   -1.1   0.1      0.52   3.1e+03      12      32 ..     289     341 ..     281     379 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
                   HHHHHHHEEETTHHHHHHHHHHHHHT--EEEE-..T CS
  CW_binding_2  11 aaaiakalatgfaDALsaaalaakknaPiLLtd..k 44 
                   a  iak la gfaD L+ ++  a ++aPiL  +  +
    EGE24951.1 102 ANTIAK-LAGGFADNLVTTVCLA-TDAPILIAPamN 135
                   445666.5888*****9999998.59*****98542 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
                   HHHHHHHHHHHT--EEEE-.T CS
  CW_binding_2  25 ALsaaalaakknaPiLLtd.k 44 
                   AL+ a + a  +a ++L++ k
    EGE24951.1 232 ALANACYHA--GADVILVSgK 250
                   444444444..7888888633 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.52
                   HHHHHH.............................EEET...THHHHHHHHHH CS
  CW_binding_2  12 aaiaka.............................latg...faDALsaaala 32 
                   aa+a++                             lat    ++D ++++ +a
    EGE24951.1 289 AAVADFkaasvadhkikktkdqqtmtlqliknpdvLATIchtYPDLICVGFAA 341
                   45555324443333444444444444444333443233233345544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2970.52
//
Query:       EGE24952.1  [L=409]
Description: Na+/H+ antiporter NhaA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     6e-151  502.6  22.2   6.7e-151  502.4  22.2    1.0  1  Na_H_antiport_1  Na+/H+ antiporter 1


Domain annotation for each model (and alignments):
>> Na_H_antiport_1  Na+/H+ antiporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  502.4  22.2  3.8e-155  6.7e-151       2     376 .]       7     380 ..       6     380 .. 0.99

  Alignments for each domain:
  == domain 1  score: 502.4 bits;  conditional E-value: 3.8e-155
                      XXXX-HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSTTTTHHHHHH CS
  Na_H_antiport_1   2 eflkseaaggilLllaavlalilansplaesYealletelalelgelelelsleewindgLmaiFFlvvglEikrellvGeLsslrkaalpvia 95 
                      +fl+ eaaggi+L +aa+la+i+anspl e+Y+a++++++ +++g+++++++ ++windgLmaiFF++vglE+kre l+GeLs+++++++p++a
       EGE24952.1   7 RFLELEAAGGIVLAAAALLAMIIANSPLDEMYHAFIHAPVVVQIGTFQIAKDAHHWINDGLMAIFFFLVGLELKREALIGELSDVKQILMPALA 100
                      899******************************************************************************************* PP

                      HHHHHHHHHHHHHSTTTTSTT.GGGTGSTT---HHHHHHHHTTSGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHS-TT--HHHHHHHHHHHHHH CS
  Na_H_antiport_1  96 AlgGmvvPaliylllnageea.akGwaipmaTDiAFalgvlallgkrvpaslkvfLlaLAivDDlgailviAlfYtselsllalllalvvlall 188
                      A+gGm++Paliy+++n+++++ ++Gwaip+aTDiAFalgvl+llg+rvp++lkvfL+++Ai+DDlgai++iAlfYts+lsl++l++a v++ +l
       EGE24952.1 101 AVGGMIMPALIYAAFNQSNPEqLAGWAIPAATDIAFALGVLSLLGNRVPNALKVFLVSIAIFDDLGAIVIIALFYTSDLSLSSLAVAGVCFPFL 194
                      ****************9998889*********************************************************************** PP

                      HHHHHTT---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS--S.......-HHHHHHHHHHHHHHHTHHHHHHHHHS---SSSS--ST.TT CS
  Na_H_antiport_1 189 lllnrlgvrslllylllgvvlWvlvlksGvhatiaGvllallipakkklkeeesplerlehalhplvaflilPlFAlanagvslegeslseall 282
                      ++ln+++v +l++yll+g+v+W+++lksGvhat+aGvlla++ip+++k++ e+sple+leh+lh++vaf +lPlFA+anag+ l+g+ +++ ll
       EGE24952.1 195 FILNKMNVVRLTPYLLIGLVMWAAFLKSGVHATLAGVLLAFFIPLRNKSDPEHSPLEELEHDLHNTVAFGVLPLFAFANAGIGLAGTGIDS-LL 287
                      **************************************************************************************99998.** PP

                      SHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTT--TTS-TTTHHHHHHHHTT--HHHHHHHHHHHSTT....HHHHHHHHHHHHHHHHHHHHHTT CS
  Na_H_antiport_1 283 spvtlgivlgLvlGKplGillasllavklklaklpeglswkqllgvallaGiGFTmslfiaelafeeeeeeleeaklgiLlgsllaavlgllll 376
                      ++v lgi++gL++GK++G+++a++l+ kl+la+lp+g+++kql+gv+ll+GiGFTmslfi+ laf + + +  + +lgi+lgs++++v+g+++l
       EGE24952.1 288 HSVPLGIAAGLFIGKQIGVMTAVFLCLKLGLASLPKGTTIKQLYGVSLLCGIGFTMSLFISGLAFGN-TPKDFDPRLGIILGSIISGVIGYMIL 380
                      *****************************************************************96.7788999****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3014.78
//
Query:       EGE24953.1  [L=153]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-13   48.3   0.1    2.4e-12   46.6   0.0    1.9  2  MliC      Membrane-bound lysozyme-inhibitor of c-type lysozym


Domain annotation for each model (and alignments):
>> MliC  Membrane-bound lysozyme-inhibitor of c-type lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.24   4.3e+03      11      27 ..      24      40 ..      18      47 .. 0.57
   2 !   46.6   0.0   1.3e-16   2.4e-12       1      63 [.      61     135 ..      61     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.24
                EEEECTTEEEEEEECCT CS
        MliC 11 vtyiagdpsfavlrlgg 27
                v+  a++  ++v++  g
  EGE24953.1 24 VSVPANQAGVVVVPTAG 40
                44445566666666655 PP

  == domain 2  score: 46.6 bits;  conditional E-value: 1.3e-16
                 EEECCCEEEEEEEE.CTTEEEEEEE.....CCTEEEEEEEEETSSSEEEE..E..TEEE.E.EETTEEEEEETTT CS
        MliC   1 YqCdsgaevtvtyi.agdpsfavlr.....lggktltLaqavSaSGarYs..a..nyew.W.tkGdeAtLtwggg 63 
                 YqCd+ga+v ++y+ ++d+++++++     l ++++++++av aSG+r++     n ++ W +kG+eA+L++  g
  EGE24953.1  61 YQCDEGAKVVANYQpENDRAVLTVSaptwhLHNQEIVMRPAVRASGMRFVndTnpNSVYdWhAKGSEALLSVILG 135
                 9*************888887777762222245677**************7651679999999********98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1206.54
//
Query:       EGE24954.1  [L=110]
Description: hypothetical protein EA1_06726 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-17   62.1   0.0    8.3e-17   61.4   0.0    1.4  1  Ub-RnfH   RnfH family Ubiquitin


Domain annotation for each model (and alignments):
>> Ub-RnfH  RnfH family Ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   4.6e-21   8.3e-17       8      83 .]      16     105 ..       8     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 4.6e-21
     Ub-RnfH   8 alpekqvllelevpegttveeAieaSgil..ekfpei............dlekakvGifgkavkldavLqegDRvEiYRpLiaDPkearr 83 
                 a   kq++ el++p gtt++eA++   ++  e+f++             + ++  vGif+++++ld++L +gDR+EiYRpL+++P+ +r+
  EGE24954.1  16 AYSGKQYYSELSLPMGTTIYEALTLVPWVhgEEFEDFwhwvqnnldnspNHKSWYVGIFSQKKRLDTILLAGDRIEIYRPLTINPMAKRK 105
                 467899********************998334667779*****997655444555********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:01.14
# Mc/sec: 292.14
//
Query:       EGE24955.1  [L=360]
Description: hypothetical protein EA1_06731 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1418  (0.0790897); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 2320.25
//
Query:       EGE24956.1  [L=230]
Description: cytochrome c4 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-21   75.0   0.6    4.4e-09   37.4   0.0    2.8  2  Cytochrom_C      Cytochrome c
    4.7e-15   55.7   2.0    3.3e-08   33.7   0.1    2.6  2  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
     0.0035   17.0   0.2       0.91    9.3   0.1    2.4  2  Paired_CXXCH_1   Doubled CXXCH motif (Paired_CXXCH_1)
     0.0053   16.5   0.0       0.67    9.7   0.0    2.3  2  Cytochrom_C550   Cytochrome c-550 domain
  ------ inclusion threshold ------
       0.11   12.6   0.0         15    5.6   0.0    2.4  2  Cytochrome_C7    Cytochrome c7 and related cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.2   7.2e-12   2.6e-08       2      87 ..      37     108 ..      36     113 .. 0.79
   2 !   37.4   0.0   1.2e-12   4.4e-09      11      90 ..     143     228 ..     125     230 .] 0.92

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 7.2e-12
                  --HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHH CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaY 87 
                  ++Gk++++anCaaCHg++g    ++ +p+l g+  ++ +++++ ++++ ++  ++    +             +lt+q++a+la Y
   EGE24956.1  37 EAGKAIVEANCAACHGLDGMSPVPT-QPNLGGQNIKYLYKQLVDFKTKARRNGIMEAQLA-------------GLTQQDLANLAGY 108
                  79*******************9998.9*******************99975544433322.............3666666666666 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 1.2e-12
                  TGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--S......SSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHT CS
  Cytochrom_C  11 nCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsap......rddfekkkltaemparkerlteqeiadlaaYLks 90 
                   C +CH ++g g++++g p+l g+++++ a++++ ++a+++++  +      ++d +k+  +++m++ ++rl++ +i+ l +YL+ 
   EGE24956.1 143 PCSGCHDPKGAGNAYAGFPRLGGQHAAYLATQLKLFRAAGREDDVSsdtevrTNDSAKAGDKGMMQMVASRLSDRDIKILSEYLSA 228
                  6*****************************************999999999989999999999999999***************86 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   9.2e-12   3.3e-08       2      66 ..      35     108 ..      34     108 .. 0.86
   2 !   20.7   0.4   1.1e-07   0.00038      14      67 .]     144     226 ..     139     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 9.2e-12
  Cytochrome_CBB3   2 aaaaGaalykknCasCHgkggag.....pslagrdwep..dalvdiiknGk..gaMpafggqlsdeelwalvaY 66 
                      +++aG+a+ ++nCa+CHg +g+      p+l g++ ++  ++lvd+ ++ +  g M a+   l++++l++l+ Y
       EGE24956.1  35 DIEAGKAIVEANCAACHGLDGMSpvptqPNLGGQNIKYlyKQLVDFKTKARrnGIMEAQLAGLTQQDLANLAGY 108
                      6899**************7877779999******777444999998888874357****99**********988 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.1e-07
  Cytochrome_CBB3  14 CasCHgkggag......pslagrdwep......................dalvdiiknGkgaMpafgg.qlsdeelwalvaYl 67 
                      C++CH+++gag      p l g++ ++                       +  d++k G ++M  +   +lsd++++ l +Yl
       EGE24956.1 144 CSGCHDPKGAGnayagfPRLGGQHAAYlatqlklfraagreddvssdteVRTNDSAKAGDKGMMQMVAsRLSDRDIKILSEYL 226
                      ******888887999997777774443445666666666776666665455555*****9999999988************97 PP

>> Paired_CXXCH_1  Doubled CXXCH motif (Paired_CXXCH_1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0043        16       5      14 ..      43      52 ..      40      76 .. 0.75
   2 !    9.3   0.1   0.00025      0.91       9      21 ..     144     156 ..     137     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0043
  Paired_CXXCH_1  5 aegeClsCHn 14
                     e +C +CH 
      EGE24956.1 43 VEANCAACHG 52
                    4667999993 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00025
  Paired_CXXCH_1   9 ClsCHnphgsdnp 21 
                     C+ CH+p g+ n+
      EGE24956.1 144 CSGCHDPKGAGNA 156
                     999**99998765 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00019      0.67      19      42 ..      29      52 ..      21      74 .. 0.80
   2 !    4.5   0.0    0.0075        27     102     132 ..      92     122 ..      75     126 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00019
                    EEEEHHHHHHHHHHHHHHTHHHHG CS
  Cytochrom_C550 19 vtlseeqlkkgkklFeaeCaqCHv 42
                    vt+ + ++++gk + ea+Ca CH 
      EGE24956.1 29 VTVPTYDIEAGKAIVEANCAACHG 52
                    6777899****************4 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0075
                     GGGTTS-HHHHHHHHHHHHHHHHHCTTTTTC CS
  Cytochrom_C550 102 pelrnltdedlkaiagyilvaakvaeeWGgg 132
                     ++l  lt++dl+++agy    +  ++++G++
      EGE24956.1  92 AQLAGLTQQDLANLAGYYASRTPWTPGYGNK 122
                     57899************98888777777765 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0043        15      13      20 ..      44      51 ..      25      73 .. 0.73
   2 ?    4.5   0.0    0.0095        34      49      59 ..     138     153 ..     116     177 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0043
  Cytochrome_C7 13 gykCtdCH 20
                   +++C++CH
     EGE24956.1 44 EANCAACH 51
                   33444444 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0095
  Cytochrome_C7  49 t.....CgaCHdgkna 59 
                    t     C  CHd k a
     EGE24956.1 138 TrgvipCSGCHDPKGA 153
                    1334448888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1815.23
//
Query:       EGE24957.1  [L=97]
Description: cytochrome c5 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-15   56.4   0.6    3.3e-15   56.2   0.6    1.1  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    0.00034   21.7   1.1      0.047   14.8   1.1    2.1  1  Cytochrom_C      Cytochrome c
     0.0084   16.1   0.3      0.013   15.5   0.3    1.4  1  Cytochrome_C7    Cytochrome c7 and related cytochrome c
  ------ inclusion threshold ------
      0.013   15.6   0.1      0.016   15.4   0.1    1.2  1  HdeA             HdeA/HdeB family
      0.045   14.2   0.0      0.052   14.0   0.0    1.1  1  zf-3CxxC         Zinc-binding domain
      0.085   12.6   0.1       0.17   11.6   0.0    1.6  2  Cytochrom_C550   Cytochrome c-550 domain


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.6   1.1e-18   3.3e-15       2      67 .]      19      95 ..      18      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 1.1e-18
  Cytochrome_CBB3  2 aaaaGaalykknCasCHgkggagpslagr..dwep.......dalvdiiknGkgaMpafgg..qlsdeelwalvaYl 67
                     a+a+ +++y+++Ca+CH++g  +++++g+   w         +al ++i++G+ +Mpa+g   +++de++++l++Y+
       EGE24957.1 19 AYADIEKIYAQSCATCHDSGTFNAPKKGDvaIWHRlnqqkgqEALIKSIRQGMPQMPAMGLcqNCTDEDFAKLIDYM 95
                     78999*****************98888777644434556777******************999*************9 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.1   1.6e-05     0.047       5      89 ..      24      96 ..      20      97 .] 0.60

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
                 HHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG...TT--HHHHHHHHHHHH CS
  Cytochrom_C  5 kelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaempark..erlteqeiadlaaYLk 89
                 ++++++ Ca+CH  +   a     p+  ++a ++  ++++ + a        + ++++ +   +mpa+   ++ t+++ a+l+ Y++
   EGE24957.1 24 EKIYAQSCATCHDSGTFNA-----PKKGDVAIWHRLNQQKGQEALI------KSIRQGMP---QMPAMGlcQNCTDEDFAKLIDYMS 96
                 6899889999996655554.....4444444444444444444444......33333333...333333568999999999999985 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   4.4e-06     0.013      12      59 ..      27      89 ..      15      96 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.4e-06
  Cytochrome_C7 12 tgykCtdCHskl.feskak......kkmaemekgkskkaeves.lt..........CgaCHdgkna 59
                   ++++C++CH++  f++ +k      +     +++k ++a ++s ++          C++C d+++a
     EGE24957.1 27 YAQSCATCHDSGtFNAPKKgdvaiwH---RLNQQKGQEALIKSiRQgmpqmpamglCQNCTDEDFA 89
                   56799999998845333322334442...2233333333333323355678889999999888776 PP

>> HdeA  HdeA/HdeB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1   5.2e-06     0.016       2      72 ..       6      72 ..       3      93 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.2e-06
                XXXXXXXXXXXXXXXXXGGG.XSCCS-GGG-BHHHHHTS-GGGHHHHHHHHHHTTSCCSGCCCCSHHHHHH CS
        HdeA  2 lalaalalaalsssAlAqkaaakakkdlskmtCedFldldeeskpkviywvegynskgkkgdavvdeegie 72
                ++l++l l+ ++s+A+A+ ++  a+   s  tC+d  + ++ +k+ v++w    ++kg++      ++g+ 
  EGE24957.1  6 WSLMVLGLV-VASNAYADIEKIYAQ---SCATCHDSGTFNAPKKGDVAIWHRLNQQKGQEALIKSIRQGMP 72
                566677777.9********955555...799*******************887777555544333344443 PP

>> zf-3CxxC  Zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.052      39      99 ..      24      85 ..       6      86 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
    zf-3CxxC 39 vrlfgQrCkkCkkleepkldeeevekvlrnlvkki.ekkfykekr.kkPykvHerelCeaCkk 99
                 +++ Q+C++C++ ++++  ++    + ++l ++  ++  +k+ r + P ++    lC++C +
  EGE24957.1 24 EKIYAQSCATCHDSGTFNAPKKGDVAIWHRLNQQKgQEALIKSIRqGMP-QMPAMGLCQNCTD 85
                589********77777777777777888888886525555555443777.667999*****75 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.5e-05      0.17      22      47 ..      16      41 ..      12      67 .. 0.82
   2 ?   -2.1   0.0      0.99     3e+03      69      76 ..      88      95 ..      76      96 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.5e-05
                    EHHHHHHHHHHHHHHTHHHHGGGSBT CS
  Cytochrom_C550 22 seeqlkkgkklFeaeCaqCHvgGktk 47
                    +++ +++ +k++ ++Ca+CH +G+ +
      EGE24957.1 16 ASNAYADIEKIYAQSCATCHDSGTFN 41
                    556677889************99754 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.99
                    HHHHHHHH CS
  Cytochrom_C550 69 vaalvdyl 76
                     a l+dy+
      EGE24957.1 88 FAKLIDYM 95
                    34455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 834.39
//
Query:       EGE24958.1  [L=480]
Description: cysteinyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.4e-128  427.7   0.1   3.5e-128  427.2   0.1    1.2  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
    1.8e-18   66.8   0.3    1.8e-18   66.8   0.3    2.1  2  DALR_2        DALR domain
    7.5e-15   54.6   0.8    2.1e-07   30.1   0.1    2.2  2  tRNA-synt_1g  tRNA synthetases class I (M)
    3.2e-07   29.0   0.0    1.2e-05   23.8   0.0    2.1  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    2.3e-06   26.8   0.2     0.0001   21.3   0.0    2.2  2  tRNA-synt_1f  tRNA synthetases class I (K)
  ------ inclusion threshold ------
      0.074   13.8   1.4          2    9.2   1.0    2.3  2  DUF5327       Family of unknown function (DUF5327)


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.2   0.1  1.2e-131  3.5e-128       2     299 ..      24     323 ..      23     325 .. 0.99

  Alignments for each domain:
  == domain 1  score: 427.2 bits;  conditional E-value: 1.2e-131
                   ---SBTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB- CS
  tRNA-synt_1e   2 vkpleekkvtlYvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptle 98 
                   +kp++ +++ +YvCG+tvyd++h+GhaR +v fD++ r+l+a+gY+v++v+n+tDidDkii+ra +++++++el+++fi+++++d + L+++ p++e
    EGE24958.1  24 FKPIHAGQIGIYVCGMTVYDYCHMGHARVMVGFDVIVRWLRAIGYQVNYVRNITDIDDKIIQRAYDNGETITELTDRFITAMHQDEQFLGCQSPNIE 120
                   68999******************************************************************************************** PP

                   -BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GGG-TTTTTTTT--HHHHHHT----S-..-S-SSTT-EEEEEE--TTS--B--TTSSEEE-SS CS
  tRNA-synt_1e  99 prvsekvdeiielvekliekgyaYavsdgdvyfdvskkeeYgklskqnleelelgaegevs..eekkdkkDfaLWkaskegepswdsPwgkGRPGWh 193
                   pr++e+++++ +l++ l+ k+ aY+ s gdvy+  +k+++Ygklsk++++++++ga+++vs  e+k+++ Df+LWk++k++ep+w+sPwg GRPGWh
    EGE24958.1 121 PRATEHIENMQHLIDVLLTKNLAYQGSGGDVYYAIEKFPNYGKLSKRHVDDMQAGASERVStaEDKRHPFDFVLWKTAKPSEPHWQSPWGLGRPGWH 217
                   *********************************************************9999889********************************* PP

                   HHHHHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSSS--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-TTS-EE CS
  tRNA-synt_1e 194 ieCsvmaskllgseidihsGGiDLafPhhenelaqseaafdkqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsahyrsqld 290
                   ieCs+m++  lg+++dih+GG+DL fPhhene+aqse a++k+++++++h g+++i+gekmsksL+nf+ti++v+ kf+p+++R++lls hyrs+++
    EGE24958.1 218 IECSAMSTCCLGETFDIHGGGHDLQFPHHENEIAQSEGATGKTYANHWMHMGFINIDGEKMSKSLGNFFTIREVVDKFHPETIRFFLLSSHYRSPVN 314
                   ************************************************************************************************* PP

                   E-HHHHHHH CS
  tRNA-synt_1e 291 fkeelleea 299
                   f++++l+e+
    EGE24958.1 315 FSDTALKES 323
                   ******986 PP

>> DALR_2  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.3     6e-22   1.8e-18       1      63 []     357     419 ..     357     419 .. 0.96
   2 ?   -2.9   0.5       3.3   9.8e+03      26      40 ..     436     449 ..     433     463 .. 0.41

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 6e-22
                 HHHHHHTBT--HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHGGGT-S-S-HHHH- CS
      DALR_2   1 kFeeaMdDDFNTaeAiavlFelakeiNralkeedkaaasalkallrelaevLGllqeepeafl 63 
                 +F +aM+DDFNT++A++vlF ++ eiNra+k+ + ++a + +++l++la+vL + q++p++fl
  EGE24958.1 357 AFAKAMNDDFNTPKAVSVLFSVVTEINRAMKAGEYQKATQEASTLKTLASVLNIAQSSPHEFL 419
                 599*************************99999999999999******************997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.3
                 HHHHHHTT-HHHHHH CS
      DALR_2  26 iNralkeedkaaasa 40 
                 +N+  +++++a+a++
  EGE24958.1 436 ANK-IAQRQQAKAQK 449
                 455.22222222221 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1     1e-08   3.1e-05      13     122 ..      44     152 ..      36     160 .. 0.87
   2 !   30.1   0.1     7e-11   2.1e-07     307     368 ..     257     317 ..     239     332 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1e-08
                   ---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHHH CS
  tRNA-synt_1g  13 klHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseehkelvqeifkklke 109
                     H+Gh++ ++  D+++R+ r+ g++v +v        +i ++A ++g t  el++++ ++++++ + l+ +  + ++   +eh e +q+++  l +
    EGE24958.1  44 YCHMGHARVMVGFDVIVRWLRAIGYQVNYVRNITDIDDKIIQRAYDNGETITELTDRFITAMHQDEQFLGCQSPN-IEPRATEHIENMQHLIDVLLT 139
                   57*****************************999999*********************99999988878777655.667778899999999999999 PP

                   TT-EEEEEEEEEE CS
  tRNA-synt_1g 110 kgliyekeieqly 122
                   k+l y+++   +y
    EGE24958.1 140 KNLAYQGSGGDVY 152
                   9888887765555 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 7e-11
                   TT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-H CS
  tRNA-synt_1g 307 aelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfsw 368
                   ++ +  ++ +  ++++++g+K+SkS g++ +++e++++++++++R++l++++   + ++fs 
    EGE24958.1 257 TGKTYANHWMHMGFINIDGEKMSKSLGNFFTIREVVDKFHPETIRFFLLSSHY-RSPVNFSD 317
                   555566777889************************************98543.34455554 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.1    0.0081        24      38      66 ..      45      73 ..      35      85 .. 0.92
   2 !   23.8   0.0     4e-09   1.2e-05     547     601 ..     261     315 ..     231     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.0081
  tRNA-synt_1 38 lHiGhalaktlkdivirykrmkGkevlyv 66
                  H+Gha   +  d+++r+ r  G++v+yv
   EGE24958.1 45 CHMGHARVMVGFDVIVRWLRAIGYQVNYV 73
                 6*************************997 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 4e-09
  tRNA-synt_1 547 fkevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltlilsdvgrdinl 601
                  + +  +h   ++ +G KmSKslgN     +v++k   + +R++l++s++ + +n+
   EGE24958.1 261 YANHWMHMGFINIDGEKMSKSLGNFFTIREVVDKFHPETIRFFLLSSHYRSPVNF 315
                  55555554445789*********************************99988887 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.011        34      29      72 ..      37      80 ..      19      96 .. 0.87
   2 !   21.3   0.0   3.5e-08    0.0001     273     320 ..     270     316 ..     261     340 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.011
  tRNA-synt_1f 29 sGispSGliHiGnlrevltadlvaralrkrgeevrlilisDdmD 72
                   G+++    H+G +r ++  d+++r lr++g +v+ +  + d+D
    EGE24958.1 37 CGMTVYDYCHMGHARVMVGFDVIVRWLRAIGYQVNYVRNITDID 80
                  577888889************************98888888887 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 3.5e-08
  tRNA-synt_1f 273 lillkggekmssSkGnvltledwlevaepevlrflilrrkPkkakkld 320
                   +i ++g+ kms+S Gn++t++++++  +pe++rf++l+++ ++ ++++
    EGE24958.1 270 FINIDGE-KMSKSLGNFFTIREVVDKFHPETIRFFLLSSHYRSPVNFS 316
                   5666666.****************************997766666554 PP

>> DUF5327  Family of unknown function (DUF5327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.085   2.5e+02      25      47 ..     120     142 ..     102     190 .. 0.76
   2 ?    9.2   1.0   0.00066         2       8      83 ..     374     449 ..     370     470 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.085
     DUF5327  25 eakvrehiaaikalceLlleeea 47 
                 e +  ehi++ + l ++ll ++ 
  EGE24958.1 120 EPRATEHIENMQHLIDVLLTKNL 142
                 56779**************8654 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00066
     DUF5327   8 vlekmeeelekakkaeseakvrehiaaikalceLlleeea.................eekapvpskplseqepvqaqvrqaekeqteevkkek 83 
                 vl     e+++a ka++ +k  ++++++k+l+ +l   ++                 +                 ++  + + +q ++ k +k
  EGE24958.1 374 VLFSVVTEINRAMKAGEYQKATQEASTLKTLASVLNIAQSspheflqanignkpdglS-----------------DAEIANKIAQRQQAKAQK 449
                 66667789**************************998776666666655533332220.................111111111222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3332.75
//
Query:       EGE24959.1  [L=47]
Description: hypothetical protein EA1_06751 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 360.05
//
Query:       EGE24960.1  [L=683]
Description: methionyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.5e-153  508.6   0.8   1.2e-152  508.2   0.8    1.1  1  tRNA-synt_1g    tRNA synthetases class I (M)
    6.4e-25   87.1   0.1    1.2e-24   86.2   0.1    1.5  1  tRNA_bind       Putative tRNA binding domain
    5.1e-13   49.0   0.3      9e-06   25.2   0.0    2.3  2  tRNA-synt_1e    tRNA synthetases class I (C) catalytic domain
    7.2e-12   44.4   0.1    6.4e-07   28.0   0.2    2.6  2  tRNA-synt_1     tRNA synthetases class I (I, L, M and V)
    8.3e-09   34.8   0.1    0.00015   20.8   0.0    2.7  2  tRNA-synt_1f    tRNA synthetases class I (K)
    2.9e-07   30.6   1.7    4.1e-07   30.1   0.1    2.0  2  Anticodon_1     Anticodon-binding domain of tRNA
     0.0087   15.7   0.3      0.019   14.6   0.3    1.5  1  Baculo_p47      Baculovirus P47 protein
  ------ inclusion threshold ------
      0.023   14.7   1.8       0.12   12.4   0.1    2.9  4  CompInhib_SCIN  Staphylococcal complement inhibitor SCIN
      0.035   13.1   0.1       0.15   11.0   0.0    2.1  1  tRNA-synt_1d    tRNA synthetases class I (R)
      0.054   13.7   0.5       0.11   12.6   0.5    1.4  1  Laminin_EGF     Laminin EGF domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  508.2   0.8  6.9e-156  1.2e-152       1     390 [.       7     399 ..       7     400 .. 0.98

  Alignments for each domain:
  == domain 1  score: 508.2 bits;  conditional E-value: 6.9e-156
                   EEEEE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHH CS
  tRNA-synt_1g   1 vlvttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseehk 97 
                   +lvt+alpYang++HlGhl+e+i++Di++R  ++ g++v++vc++D+hGt+i+lkA+++g+tpee +++v+++++++f+ + i fd+y++t+s+e++
    EGE24960.1   7 ILVTSALPYANGPIHLGHLVEYIQTDIWVRAMKAMGHNVTYVCADDAHGTAIMLKAQDNGITPEEQIATVKASHEKDFAGFLIDFDNYHSTHSSENQ 103
                   69*********************************************************************************************** PP

                   HHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-EE........-TTS-EE-TTSSB-E................EEE.EEEEEE-GGGGHHH CS
  tRNA-synt_1g  98 elvqeifkklkekgliyekeieqlycpkderflpdryvegtCPkckseeargdqceecgkkleptelinpksaisgskpevketehlffklskfekk 194
                    ++q+i+++lk++g+i +k++eql++++++ fl+dr+v+gtCP+c + +++gd+ce c+++++ tel+np s++s+s+p++++++h+ff+l++f+++
    EGE24960.1 104 YFSQKIYTTLKQNGYIFTKDVEQLFDTEKGLFLADRFVKGTCPECDAPNQYGDNCEVCSSTYNATELKNPYSTLSNSSPIIRSSKHYFFNLPQFDEF 200
                   ************************************************************************************************* PP

                   HHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SS.S-EET....TECCEEE-HHHHHHHHHHHTTTTT-...TTSGGGG.G--S......EE CS
  tRNA-synt_1g 195 lkewieeeekeleenvkkivkewlkegLkdlaisrdldw.GipvP....gaekkvlYVWldAligYisatkelakkkgeeekwkeyWakdkevelvh 286
                   l++w+ +++ +l++++ ++++ew+++gL +++isrd+++ G+++P    ++++k++YVWldA++gY++++k+l++++  + +++ey++kd+++el+h
    EGE24960.1 201 LRTWT-KSQGRLQSSIYNKLSEWFDAGLAPWDISRDAPYfGFKIPdtpaDEPDKYFYVWLDAPVGYMASFKNLCDRT--DMDFDEYFNKDSQTELYH 294
                   *****.77779*********************************999999************************555..89**************** PP

                   EEEGGGHHHHHTHHHHHHHHTT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHH.HS-TTS-EEE-HHHHHHHHHHHCCCH CS
  tRNA-synt_1g 287 figkdiikFHtifwPaillgaelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaa.eapekkDldfswedfvervNseLadk 382
                   figkdi++FH++fwPa+l+ga++++p++v ah++ltv+g+K+SkSrg+++ka+++l++ld+++lRYy+a+  + + +D+++ +edf+++vNs+L++k
    EGE24960.1 295 FIGKDIVYFHSLFWPAMLEGAGYRTPTAVNAHGFLTVNGEKMSKSRGTFIKAETYLTHLDPEYLRYYFASkLSANVEDINLDLEDFMQKVNSDLVGK 391
                   **********************************************************************677889********************* PP

                   HHHHHHHH CS
  tRNA-synt_1g 383 lgnlvnRv 390
                   ++n+++R+
    EGE24960.1 392 VVNIASRS 399
                   *******7 PP

>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.1   6.6e-28   1.2e-24       1      95 [.     588     680 ..     588     681 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 6.6e-28
                 EEEEEEEEEEEETTSSTEEEEEEEESSSSEEEEEESCTTTSTHHHHTTEEEEEETTSESEEETTEEESSEE-EEECCESSCEEEEEESST--TTC CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeeeprqivsgaknvyepeelvakkvvvvanlkpkklrGveSeGMilsaeeldekevgilelpadveaGe 95 
                 ++v++v++++ +++adkLl +++dvGee  r+++sg++++y+peel +kkv++v nl p+k+++  SeGMilsae  +++   +++lp+++++G+
  EGE24960.1 588 MKVAHVVKCQSVEGADKLLQFTLDVGEEHTRNVFSGIAKFYQPEELTDKKVICVTNLAPRKMKFGISEGMILSAE--KQGVLTVITLPDTMPIGA 680
                 68*************************************************************************..8*************9995 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   6.7e-08   0.00012      22     134 ..      19     131 ..       4     138 .. 0.82
   2 !   25.2   0.0     5e-09     9e-06     244     283 ..     326     365 ..     293     384 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 6.7e-08
                   --BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB--BGGGGHHHH.HHHHHHHHH CS
  tRNA-synt_1e  22 ashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptleprvsekvdei.ielveklie 117
                    +hlGh  +++ +Di  r ++a+g++v++v         i+++a++++ + +e  +++ ++++kd++   +   ++++  s + +    ++  +l +
    EGE24960.1  19 PIHLGHLVEYIQTDIWVRAMKAMGHNVTYVCADDAHGTAIMLKAQDNGITPEEQIATVKASHEKDFAGFLIDFDNYHSTHSSENQYFsQKIYTTLKQ 115
                   58****************************987777889***************************9999987777655554444440556677888 PP

                   TTSEEE-TTS-EEE-GG CS
  tRNA-synt_1e 118 kgyaYavsdgdvyfdvs 134
                   +gy ++ +  +  fd++
    EGE24960.1 116 NGYIFTKD-VEQLFDTE 131
                   89988877.56667765 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 5e-09
                   E--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS CS
  tRNA-synt_1e 244 nghlkiegekmsksLknfitikdvlkkfdprqlRllllsa 283
                   +g+l+++gekmsks + fi+ +  l++ dp+ lR++++s+
    EGE24960.1 326 HGFLTVNGEKMSKSRGTFIKAETYLTHLDPEYLRYYFASK 365
                   59***********************************987 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.2   3.6e-10   6.4e-07      30      89 ..      12      72 ..       3     104 .. 0.78
   2 !   13.4   0.0   9.3e-06     0.017     549     602 .]     322     376 ..     255     376 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.6e-10
  tRNA-synt_1 30 gPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekk.lgakek 89
                   Py++G +H+Gh ++ +  di +r  +  G++v+yv   D +G ai  k + + ++ +e+
   EGE24960.1 12 ALPYANGPIHLGHLVEYIQTDIWVRAMKAMGHNVTYVCADDAHGTAIMLKAQDNgITPEEQ 72
                 56*********************************************98876541433444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.3e-06
  tRNA-synt_1 549 evlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltli..lsdvgrdinls 602
                   v  hg+++  +G KmSKs g  i+ ++ ++++  + lR++ +  ls +++dinl+
   EGE24960.1 322 AVNAHGFLT-VNGEKMSKSRGTFIKAETYLTHLDPEYLRYYFAskLSANVEDINLD 376
                  577788865.58******************************98889999999986 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   8.3e-05      0.15      34      69 ..      17      52 ..       3      61 .. 0.88
   2 !   20.8   0.0   8.5e-08   0.00015     262     322 ..     316     376 ..     297     389 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.3e-05
  tRNA-synt_1f 34 SGliHiGnlrevltadlvaralrkrgeevrlilisD 69
                   G+iH+G l e +++d+ +ra++++g++v  ++  D
    EGE24960.1 17 NGPIHLGHLVEYIQTDIWVRAMKAMGHNVTYVCADD 52
                  69***************************9998765 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 8.5e-08
  tRNA-synt_1f 262 ggeaPekvvYelillkggekmssSkGnvltledwlevaepevlrflilrrkPkkakkldld 322
                   g++ P  v+   +l  +gekms+S+G+++  e  l+ + pe lr++++++   +  +++ld
    EGE24960.1 316 GYRTPTAVNAHGFLTVNGEKMSKSRGTFIKAETYLTHLDPEYLRYYFASKLSANVEDINLD 376
                   7888999998999999999*****************************9666665566655 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.5   2.7e+03       8      43 ..     269     302 ..     266     305 .. 0.81
   2 !   30.1   0.1   2.3e-10   4.1e-07      14      88 ..     430     504 ..     421     555 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
  Anticodon_1   8 lnklvkevteayeeyrfnkaasalyeffwndlcdwy 43 
                  + +l  +++ +++ey  ++  ++ly+f+ +d+  +y
   EGE24960.1 269 FKNLCDRTDMDFDEYFNKDSQTELYHFIGKDI--VY 302
                  5677788899999**99*********998776..55 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 2.3e-10
  Anticodon_1  14 evteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk..raaqevllevletllrllaPfmPfitEel 88 
                  e+ +aye  +f+k+ + ++     d ++ y++  kp+  ++ ++ +  +++ +v l ++++l++ laP++P ++E +
   EGE24960.1 430 EIAAAYEAREFAKVTRLIMAC--ADKANEYIDTQKPWALNKAGKFDevQKVCTVSLNIFHKLIIYLAPILPKLSEQA 504
                  7889****************5..6667**************99999955588***********************86 PP

>> Baculo_p47  Baculovirus P47 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3     1e-05     0.019     206     301 ..      29     123 ..      24     128 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1e-05
  Baculo_p47 206 vkaeyaadlvkllqqdktkvilnnksdnvilvelkdvg.esmvvlrklksllekklvnllfvtdvefykhdvflfylynslkfyyyllknkfvfeyd 301
                 ++++ +  ++k + ++ t+v  ++     i+++ +d+g   +  ++++k   ek     l+  d ++y+ ++   + y+s k+y  l +n ++f  d
  EGE24960.1  29 IQTDIWVRAMKAMGHNVTYVCADDAHGTAIMLKAQDNGiTPEEQIATVKASHEKDFAGFLI--DFDNYHSTHSSENQYFSQKIYTTLKQNGYIFTKD 123
                 67888999**************9988888888888777356899*****999999887665..666****************************976 PP

>> CompInhib_SCIN  Staphylococcal complement inhibitor SCIN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       5.1   9.2e+03      35      52 ..      98     115 ..      93     127 .. 0.73
   2 ?   -3.8   0.0         7   1.3e+04      95     110 ..     205     221 ..     201     223 .. 0.72
   3 ?   -0.4   0.0      0.65   1.2e+03      58      80 ..     474     496 ..     452     511 .. 0.82
   4 ?   12.4   0.1   6.8e-05      0.12      18      81 ..     531     594 ..     527     605 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.1
  CompInhib_SCIN  35 dktsseyqdkklaeeLke 52 
                        +++y  +k+   Lk+
      EGE24960.1  98 HSSENQYFSQKIYTTLKQ 115
                     456788888888877764 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7
  CompInhib_SCIN  95 aeakvrLe.kiYneide 110
                     ++++ rL+ +iYn+++e
      EGE24960.1 205 TKSQGRLQsSIYNKLSE 221
                     56667777369999987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.65
  CompInhib_SCIN  58 nvnkLaagsLnayykrtiliaey 80 
                     +v+k+++ sLn ++k  i +a  
      EGE24960.1 474 EVQKVCTVSLNIFHKLIIYLAPI 496
                     79999**********99887755 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 6.8e-05
  CompInhib_SCIN  18 stgikllekneadassldktsseyqdkklaeeLkeLldesnvnkLaagsLnayykrtiliaeyk 81 
                     +++++ ++k++ +a   d  ++  q     +  k++ld+++  k a+  ++ + k t+++a+  
      EGE24960.1 531 TPLMQRIDKDKVNAMIHDSKENLTQTSGTDNTKKTVLDDTDTAKSAYIGIDEFAKVTMKVAHVV 594
                     688999******************************************************9975 PP

>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.5e-05      0.15      19      63 ..       4      48 ..       1      85 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.5e-05
                  T-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEE CS
  tRNA-synt_1d 19 kkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirl 63
                   +k++v  + P    ++h GhL   i  d  +r + ++G++v+ +
    EGE24960.1  4 SRKILVTSALPYANGPIHLGHLVEYIQTDIWVRAMKAMGHNVTYV 48
                  68999999999999****************************865 PP

>> Laminin_EGF  Laminin EGF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   6.2e-05      0.11      16      42 ..     141     169 ..     134     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.2e-05
                  TTECES.BT.TTEESTTS-EE-TTEEEGT CS
  Laminin_EGF  16 stgqCl.Ck.enveGrkCdrCkpgyyglp 42 
                  ++g+C  C  +n  G++C+ C++ y   +
   EGE24960.1 141 VKGTCPeCDaPNQYGDNCEVCSSTYNATE 169
                  689*****648************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4687.50
//
Query:       EGE24961.1  [L=462]
Description: diacylglycerol O-acyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-39  134.6   0.0      7e-39  134.2   0.0    1.1  1  WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransfer
    1.9e-30  105.7   0.0    3.1e-30  105.0   0.0    1.4  1  DUF1298         Protein of unknown function (DUF1298)
  ------ inclusion threshold ------
      0.029   13.1   0.6       0.11   11.2   0.4    1.8  2  Condensation    Condensation domain
      0.086   12.7   0.5       0.35   10.7   0.5    2.0  1  CLTH            CTLH/CRA C-terminal to LisH motif domain


Domain annotation for each model (and alignments):
>> WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   1.6e-42     7e-39       1     263 [.       4     268 ..       4     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 1.6e-42
  WES_acyltransf   1 LsplDalflelesaetpmhvgalavleppskgagelllrrlreaieqreeraprlrqkvveeplglaapvWvededfDldyHvRrvalpaPGter 95 
                     Ls +D lfl+le++++pmhv+ + v+e p+++++ ++++ l+++i   +   ++++q      + +++ +W + ++f +d+H  r  l+  G++ 
      EGE24961.1   4 LSIVDSLFLWLENTKQPMHVAGICVFELPNDQDEISFINVLANQIDSDAIPNFPFNQ------VLFHKFAWKTIRKFHIDRHCYRHSLQT-GKMS 91 
                     6789*********************************************99999999......78999********************75.**** PP

  WES_acyltransf  96 ellelvsrLasspLDrsrPlWevhviEGle......ggriAillkvHHAliDGvgglkllarlldldpddpprpeppqvpprdr.srtqlrasg. 182
                     e  + +srL++++LDr rPlWe+h+ + le       +r+ ++lk HHA+iDGv++++l++r+l+ +pd++  + ++    r + s+   + +  
      EGE24961.1  92 EAIAQISRLHEQQLDRTRPLWELHLFDNLEpetqngTRRFLLYLKAHHAMIDGVAAMRLFQRSLSHSPDEKLSKPIWLRNIRRKeSSFVMDKKPi 186
                     *****************************8544444479******************************99888888754444323333332222 PP

  WES_acyltransf 183 ..alvglvaglgkvlgsvagvvssagrlleaal...earslvlpfaaprtplntplsraRrfaaaslpLadvkavakalgvtiNDv 263
                        +++ +agl+ v + ++   + +  +    +    + + +++++ap+++ln++++ +R + + +l+ a+  +vak+l v+ ND+
      EGE24961.1 187 veHFKDQIAGLKPVYQELKSDYQLSQST----AsqtPKTQFISSLQAPSSILNQRIGTSRHICVLTLKKARFVQVAKRLSVSTNDI 268
                     2233333333333333333333322222....134478899********************************************7 PP

>> DUF1298  Protein of unknown function (DUF1298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   6.9e-34   3.1e-30       2     143 ..     308     451 ..     307     453 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 6.9e-34
     DUF1298   2 GNqigvvllpLpidladPlerlrkakkamdrkKrsleavltylllelllkllpakvaaalikrl...lsnttlviSNvpGPqeelylaGaplkaiypvv 97 
                 GNqi+++  +L+++  d + rlr +++++++ K +   + + +++++ +++  a+++ +l++rl   ++ ++l+iSN+pG++ +lyl+Ga+l+a+yp++
  EGE24961.1 308 GNQISFIPTNLGTNNPDAIARLRLIHDSVQAGKMRAGRMTQAEFINY-TAVHYAWAGINLAMRLypaKQAFNLIISNIPGDSTPLYLNGAKLTAMYPAS 405
                 9**********************************************.************9999999******************************** PP

     DUF1298  98 pglpgqalnitvlSyagklriglavdkdlvpdpqkllddleealee 143
                 ++ +gqalni+++ y++ +++g++++++++p++q l + l +al e
  EGE24961.1 406 VLFDGQALNISFTNYQDCIDFGITACQTALPNIQSLPSLLTQALVE 451
                 ************************************9999999865 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   2.4e-05      0.11      97     154 ..      92     155 ..      66     162 .. 0.62
   2 ?   -0.8   0.0       0.1   4.6e+02     238     266 ..     252     280 ..     239     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.4e-05
                   HHHHHHHHHHHTC--SCCCS.-SEEEEEE.......ESSTTEEEEEEEEECCT--TTT.HHHHHHHH CS
  Condensation  97 eaieefaqkdlqepfdLekg.pLfraalf.......kiaenrlllllsvHHiivDGvS.lgillrdl 154
                   eai ++ +    ++ +L++  pL+  +lf       +  ++r+ll+l+ HH ++DGv  ++++ r+l
    EGE24961.1  92 EAIAQISR---LHEQQLDRTrPLWELHLFdnlepetQNGTRRFLLYLKAHHAMIDGVAaMRLFQRSL 155
                   33444444...2333455444888888873222222346789**************96256666665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.1
                   HHHHHHHHSTSS-HHHHHHHHHHHHHHHH CS
  Condensation 238 eklrklakeqgvtlndvllaalgllLsky 266
                   +++ ++ak  +v+ nd+ la+ + ++  y
    EGE24961.1 252 ARFVQVAKRLSVSTNDIILAVCSTAIRNY 280
                   5677899999************9999887 PP

>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   7.9e-05      0.35       4      44 ..      77     116 ..      75     237 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.9e-05
        CLTH   4 erqkIiklilegdlseaiewinenkpellesnsnLeFkLkl 44 
                  r+  ++++++g++seai++i++++++ l++    + +L+l
  EGE24961.1  77 DRHCYRHSLQTGKMSEAIAQISRLHEQQLDRTRP-LWELHL 116
                 688899*********************9999533.334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3328.91
//
Query:       EGE24962.1  [L=260]
Description: thiazole synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-108  362.2   1.9   1.3e-108  362.0   1.9    1.0  1  ThiG          Thiazole biosynthesis protein ThiG
    8.9e-05   22.0   0.2    0.00065   19.2   0.1    2.0  2  His_biosynth  Histidine biosynthesis protein
     0.0046   16.0   0.6      0.011   14.8   0.3    1.5  1  FMN_dh        FMN-dependent dehydrogenase
  ------ inclusion threshold ------
      0.018   15.5   0.1      0.028   14.9   0.1    1.3  1  NBD_C         Nucleotide-binding C-terminal domain
       0.11   12.8   0.0       0.21   11.8   0.0    1.5  2  Hydrolase     haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.0   1.9  3.7e-112  1.3e-108       2     247 .]       7     253 ..       6     253 .. 0.99

  Alignments for each domain:
  == domain 1  score: 362.0 bits;  conditional E-value: 3.7e-112
                 ETTEEES--EEEE-STSSSHHHHHHHHHHHT-SEEEEECCGSTTTS.TTS--CCCCCHCCTSEEEEE-TT-SSHHHHHHHHHHHHHTT.S-SEEEE--B CS
        ThiG   2 iagkefksrlllGtgkykslevlkeaveasgaeivtvalrRvnleekaseeellelleekevtllPntaGaktaeeAvriarlarevl.etdliklEvi 99 
                 i+ ++f+srll+Gtgkyk+l+ +k+a++asga+ivtva+rR+n++++++e++ll++++ +++t+lPntaG+ +a+ Avr++ lare+l +++l+klEv+
  EGE24962.1   7 IGSRSFNSRLLVGTGKYKDLNETKDAIHASGANIVTVAIRRTNIGQNKDEPNLLDVISPNKYTILPNTAGCFDADSAVRTCMLARELLdGHNLVKLEVL 105
                 7889**********************************************************************************99789******** PP

                 CETTTTEB-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTS----S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT- CS
        ThiG 100 adektLlPdvvetlkaaeiLvkeGFevlpYvsdDlvlarrleevGcaavmPlaapiGsglGllnkealkiiieeakvPvivDAGigspsdaaqamelGa 198
                 +dek L+P+ +etlkaa++L+++GFev++Y+sdD+++a+ le++Gc a+mPl++ iGsglG+ln+++l++iie++kvPv+vDAG+g++sdaa amelG+
  EGE24962.1 106 GDEKNLYPNITETLKAAKVLIDDGFEVMVYTSDDPIVAKELENMGCVAIMPLGSLIGSGLGILNRHTLSLIIEQTKVPVLVDAGVGTASDAAIAMELGC 204
                 *************************************************************************************************** PP

                 SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHHHHH------SS-XTTST CS
        ThiG 199 davllntavaeakdpvamArafklaveaGrlaylagriekrevasassp 247
                 d+vl+nta+a+ak+pv+mA+a+++av aGr+a+lagr+++r++a+assp
  EGE24962.1 205 DGVLMNTAIAHAKNPVMMASAMNHAVVAGREAFLAGRMPARHMAQASSP 253
                 ************************************************8 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.11   3.8e+02      97     129 ..      14      46 ..       9      63 .. 0.85
   2 !   19.2   0.1   1.8e-07   0.00065      61     114 ..     169     224 ..     164     234 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.11
                   SEEEESHHHHH-THHHHHHHHHHCGGGEEEEEE CS
  His_biosynth  97 dkviigtaavknpelikelaekfgsqkivvaiD 129
                   +++ +gt   k+ +  k+++++ g++ ++vai 
    EGE24962.1  14 SRLLVGTGKYKDLNETKDAIHASGANIVTVAIR 46 
                   578899999999999999999999988889885 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.8e-07
                   HHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHH..H-THHHHH CS
  His_biosynth  61 nldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaav..knpelike 114
                   n + ++ i+e++++pv v+ G+ + +d++ ++e+g+d v ++ta +  knp ++ +
    EGE24962.1 169 NRHTLSLIIEQTKVPVLVDAGVGTASDAAIAMELGCDGVLMNTAIAhaKNPVMMAS 224
                   56778889***********************************9662255554444 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3     3e-06     0.011     267     300 ..     179     210 ..     169     221 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-06
                 HH..SS-EEEESS--SHHHHHHHHHTT-SEEEES CS
      FMN_dh 267 avggrievlvDgGirrGsDvlkAlalGAdavllG 300
                 +   +++vlvD G+ + sD++ A+ lG d+vl+ 
  EGE24962.1 179 QT--KVPVLVDAGVGTASDAAIAMELGCDGVLMN 210
                 33..477777777777777777777777777765 PP

>> NBD_C  Nucleotide-binding C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   7.8e-06     0.028      33     142 ..     102     215 ..      87     236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.8e-06
                 HHHHSCCTCHHHHHHHHHHHHHCCTCCTSSEEEEEECTGHHHH.HH---HHCCC-HHHH...HHHHHHHHHHHHHHHH....HC.TECEEEEESHHHHH CS
       NBD_C  33 ealledeesaeaeieraleqaeeallaagkdvlvytsrepedvrdaleslqaelglera...geriaaalaeiarrlv....er.gvrrlviaGGdtss 123
                  ++l de++    i+++l++a+  + + g  v+vyts +p    ++le++    g+ +    g++i++ l+ + r+ +    e+ +v  lv aG  t+s
  EGE24962.1 102 LEVLGDEKNLYPNITETLKAAKVLIDD-GFEVMVYTSDDPIVA-KELENM----GCVAImplGSLIGSGLGILNRHTLsliiEQtKVPVLVDAGVGTAS 194
                 456667788888999*****9999966.*************88.675554....44444678*************999999966478889999*99999 PP

                 HHH..HHCT--EEEEEEEEET CS
       NBD_C 124 avl..kaLgvkgleilgeiap 142
                 +++   +Lg +g+ +   ia+
  EGE24962.1 195 DAAiaMELGCDGVLMNTAIAH 215
                 998677888888888777765 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.9e-05      0.21      87     151 ..      30     146 ..       4     155 .. 0.69
   2 ?   -2.7   0.0       1.6   5.8e+03      46      51 ..     213     217 ..     177     248 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.9e-05
                 HHHHHHHHHHCHHHHHH................................................TTHHHHHHHHH.HTHHBHTTHHHHHHHHH...HT CS
                 xxxxxxxxxxxxxxxxx................................................xxxxxxxxxxx.xxxxxxxxxxxxxxxxx...xx RF
   Hydrolase  87 gaaigsaqsqgrtvall................................................qaralavftia.dplkvkpeaaeavasLk...aa 133
                 ++ai++  +   tva+                                                 +++ l  +++  d++ ++p + e++++ k   + 
  EGE24962.1  30 KDAIHASGANIVTVAIRrtnigqnkdepnlldvispnkytilpntagcfdadsavrtcmlarellDGHNLVKLEVLgDEKNLYPNITETLKAAKvliDD 128
                 555555555555555557777777777777777777777777777777777777777777788885544444444448888***********8877799 PP

                 TEEEEEEESSEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
   Hydrolase 134 gievvlltgdnpetaera 151
                 g+ev + t+d+p  a+++
  EGE24962.1 129 GFEVMVYTSDDPIVAKEL 146
                 ************999865 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
                 HHHHHH CS
                 xxxxxx RF
   Hydrolase  46 lvaaak 51 
                 + a ak
  EGE24962.1 213 I-AHAK 217
                 2.2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1974.19
//
Query:       EGE24963.1  [L=107]
Description: hypothetical protein EA1_06771 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-08   35.5   0.0    1.5e-08   35.1   0.0    1.2  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   8.4e-13   1.5e-08      13     101 ..      16      88 ..       8      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 8.4e-13
   Rhodanese  13 kvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGykn.vsvldGGf 101
                 k ++ DvR++e+Y++ghI++Avn              pl ++ + ll+     k  ++v+c gg +a+ aa+l+ +l   + + +l GG 
  EGE24963.1  16 K-VIWDVRDAEQYQEGHIEHAVNH-------------PLSTIDKTLLDA---TKGDIYVLCGGGTKAQKAAKLINELDNDRrIIHLTGGT 88 
                 3.3*********************.............999999999998...7888**********999999999877566799999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 825.14
//
Query:       EGE24964.1  [L=100]
Description: hypothetical protein EA1_06776 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.092   12.9   0.0       0.14   12.3   0.0    1.3  1  EcoEI_R_C  EcoEI R protein C-terminal


Domain annotation for each model (and alignments):
>> EcoEI_R_C  EcoEI R protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.7e-06      0.14      49      84 ..       4      39 ..       2      54 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.7e-06
   EcoEI_R_C 49 itpealweayellek.kvspqltdlidlirkiaglde 84
                ++p +l++ +++++   + p+l+dl +++r++a++  
  EGE24964.1  4 FKPNQLRQKLQHPNPfAK-PSLADLASFLRHLAFGLW 39
                7899********988655.77*************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 701.09
//
Query:       EGE24965.1  [L=56]
Description: hypothetical protein EA1_06781 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.15   12.0   0.0    1.1  1  LAMTOR5   Ragulator complex protein LAMTOR5


Domain annotation for each model (and alignments):
>> LAMTOR5  Ragulator complex protein LAMTOR5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.3e-06      0.15      41      73 ..      12      46 ..       5      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.3e-06
     LAMTOR5 41 sagiitallklAskLe..sesseaPvitlesedgs 73
                ++++i++ +kl sk+    ++s +P+i+l ++ ++
  EGE24965.1 12 RSNFIKSVIKLLSKMSeiLNGSAKPTICLDGKYAA 46
                68999**********9888999*******988774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 452.51
//
Query:       EGE24966.1  [L=46]
Description: hypothetical protein EA1_06791 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 343.12
//
Query:       EGE24967.1  [L=277]
Description: inositol-1-monophosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-65  219.4   0.0    7.3e-65  219.2   0.0    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.2   0.0   4.1e-69   7.3e-65       3     261 ..       2     262 ..       1     272 [. 0.90

  Alignments for each domain:
  == domain 1  score: 219.2 bits;  conditional E-value: 4.1e-69
                 HHHHHHHHHHHHHHHHHHHHHTT.TSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHH CS
  Inositol_P   3 eevtkaavelaakagevlreefs.enelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFv 100
                 e++  +a ++a+k+g  + ++ +  ++l+   +s +g   lvt++d+ +eel +++l+e++p+h+ lgee + ++   ++ +++++w++DP+DGT nFv
  EGE24967.1   2 EPMVVMAANAAKKVGHEILRAHQnRHRLDLAVES-KGLDGLVTQIDRYAEELTIATLKESYPNHSYLGEEFGLQEG--KGHDADWCWVIDPLDGTQNFV 97 
                 7899999999**9999999999855666666666.68889******************************888877..799999*************** PP

                 HT-SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCH.....EEEBES CS
  Inositol_P 101 rgipqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsae.....gvrsvg 194
                 +g p+++Vsi++ ++g+   Gvi++P+ ++++sa++g+Ga++n+++l++s++++i++ l +t  ++++    ++ s+ +++ + ++a      +vr++g
  EGE24967.1  98 HGVPHFCVSIAVQKNGVTEHGVIYDPVRDEMFSASRGRGAVMNQRRLQVSERKTIEGGLFTTGHPYERMVGEERVSFARQHFASLQAIcenggQVRRFG 196
                 ************************************************************99999999888888777766655555448899******* PP

                 SHHHHHHHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSCSSSTTSSEEEEESCHHHHH CS
  Inositol_P 195 ssalklaavaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakgegrlllargiiaanqkelae 261
                 s+al+l++va+G+ d y e++ +k+WD+AAGe+i++ea Gvv+d kg ++++ ++++ a+n k l++
  EGE24967.1 197 SAALDLCYVAAGRYDGYFEMS-LKPWDMAAGELIVTEARGVVVDHKGASNAMTTGSVFACNVKLLKP 262
                 *********************.*************************************99444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2066.47
//
Query:       EGE24968.1  [L=698]
Description: 1-deoxy-D-xylulose-5-phosphate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-103  345.2   1.2    1.2e-98  329.6   0.2    2.7  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    2.4e-34  118.6   0.0      5e-34  117.5   0.0    1.5  1  Transket_pyr     Transketolase, pyrimidine binding domain
    1.4e-20   73.4   0.2    3.2e-19   69.0   0.1    2.4  2  Transketolase_C  Transketolase, C-terminal domain
    2.5e-07   30.6   2.0    7.4e-07   29.1   0.4    2.4  3  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
    5.8e-05   22.2   0.0    0.00011   21.3   0.0    1.4  1  E1_dh            Dehydrogenase E1 component
    0.00047   19.2   0.3      0.085   11.8   0.8    2.6  2  Transketolase_N  Transketolase, thiamine diphosphate binding 


Domain annotation for each model (and alignments):
>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.6   0.2  4.1e-102   1.2e-98       1     273 []      29     341 ..      29     341 .. 0.91
   2 ?   -1.9   0.0       0.5   1.5e+03      45      71 ..     444     471 ..     426     476 .. 0.77

  Alignments for each domain:
  == domain 1  score: 329.6 bits;  conditional E-value: 4.1e-102
  DXP_synthase_N   1 LekinspedlkklskeeleelaeelrefliesvsktggHlasnLgvveLtlalhyvfdtpkDklvwDvgHqaYvhKiltgRkdkfktlrqkgGls 95 
                     L+ i sp+dlk+l++++l +la+elr++l+ s   +ggH+++nLgvveLt+alh v++tp DklvwDvgHqaY+hK+ltgR++++ ++r+k+Gl+
      EGE24968.1  29 LDCIASPDDLKALTNDQLIQLADELRAYLLYSTGVSGGHFGANLGVVELTIALHAVLNTPYDKLVWDVGHQAYAHKVLTGRRERLPSIRSKDGLT 123
                     6889******************************************************************************************* PP

  DXP_synthase_N  96 gfpkrsEseyDafeagHsstsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsisknvGalskylskll 190
                     +fp+r+Es+yD+f++gHsstsisaalG++ a++l ge+++v aviGDga+tgGmafea+n++ +++++llv+lNdN+msis  +G++s++l+kl+
      EGE24968.1 124 AFPEREESQYDTFGVGHSSTSISAALGMSLAARLLGENRTVAAVIGDGAMTGGMAFEAMNDAVQQNADLLVVLNDNDMSISAAIGGFSRHLAKLW 218
                     *********************************************************************************************** PP

  DXP_synthase_N 191 sskayeklkkevkkll.k..............................kigkklaelakkl.........keslkellvpgtlfeelgfkYlGpi 245
                     ++    ++ k+++ l+ k                              ki++k+ el++ +          e++ + l+  +lf+++gf+YlGp 
      EGE24968.1 219 QRGLAMDIDKHGNILMvKrtissddrrirhylhmangafedvssrlpsKISEKISELFHGVtssplpdkiAEKIGDKLFADNLFKAIGFTYLGPY 313
                     **9999999988776633677789999999999999988888877776555666655554333333322267777777889************** PP

  DXP_synthase_N 246 dGhdleelikvleevkklkgpvllhvvt 273
                     dGhdl +li+vle++k+lkg++l+hv t
      EGE24968.1 314 DGHDLPKLIQVLERAKQLKGAILIHVHT 341
                     **************************87 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.5
  DXP_synthase_N  45 gvveLtlalhyvf.dtpkDklvwDvgHq 71 
                     g +   +a++  f +   D+l++Dv+ q
      EGE24968.1 444 GKIKPVVAIYSTFlQRGYDQLIHDVALQ 471
                     556667899988835668******9987 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0   1.7e-37     5e-34       4     173 ..     380     539 ..     377     541 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 1.7e-37
                   EHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCHH CS
  Transket_pyr   4 awrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqairsge 100
                   ++++++++ l   ++ d+++v+i+ ++a+g++ v+ + ++++   r++d+ i+Eq++++ a+G+a++g + ++v+a++++F++    + ++++++++
    EGE24968.1 380 KYSQIFGDWLLHWANIDERLVAITPAMAEGSGMVEYATKYPK---RFFDVAIAEQHAVTLAAGMATSG-KIKPVVAIYSTFLQ----RGYDQLIHDV 468
                   67899999**********************************...***********************.6*************....********** PP

                   HHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SS CS
  Transket_pyr 101 akgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpks 173
                   a+++l v+  ++r+++ vgedG++h +++++aflr++p++ +++Psd+ e+ +ll + ++  +++  ++r+p++
    EGE24968.1 469 ALQNLDVTfAIDRAGL-VGEDGATHAGVFDLAFLRCVPNVIIAAPSDEHECHQLLNTCYQ--YDGVAAVRYPRG 539
                   ****************.*******************************************..778******996 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.078   2.3e+02      54      93 ..     182     227 ..     145     248 .. 0.67
   2 !   69.0   0.1   1.1e-22   3.2e-19       8     124 .]     571     687 ..     566     687 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.078
                      HHHHHHHHSEEEEEEEE......ESTTSHHHHHHHHHHHCCCTTCS CS
  Transketolase_C  54 ilesvkktgrlvvveea......vkrgGigsevaaalaeeafdgld 93 
                      ++++v++   l+vv ++      + +gG++ ++a+++++ +  ++d
       EGE24968.1 182 MNDAVQQNADLLVVLNDndmsisAAIGGFSRHLAKLWQRGLAMDID 227
                      5555555554444444312222246899999999999996666555 PP

  == domain 2  score: 69.0 bits;  conditional E-value: 1.1e-22
                      TTSSEEEEEETTHHHHHHHHHHHHHTT.TTCEEEEE-SEEESHHHHHHHHHHHH.HSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSSEEEEE CS
  Transketolase_C   8 egkdvtlvayGsmveealeAaeeLeke.gisaeVvdlrtvkplDketilesvkk.tgrlvvveeavkrgGigsevaaalaeeafdgldapvkrv 99 
                      + k+++++++G+ ++ al Aa++L++   i + Vvd+r+vkplD+++il +++    ++ +vee+ ++gG gs+v++++      +  ++ +++
       EGE24968.1 571 STKKLAVLSFGTRLKDALTAAQRLSESqAIACIVVDMRWVKPLDEALILRLLEMgVTHIATVEEHQITGGAGSAVNEFIVS---LQALVKLLNI 661
                      5799********************99879********************88775168999*********************...9999****** PP

                      EE-SS.SSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C 100 ggpdv.iepgsaeelekafgldaeki 124
                      g++d+ i ++s ee++ +  ld++ i
       EGE24968.1 662 GIKDAfIHHASHEEQLLYCRLDTDGI 687
                      **************999999998876 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.4   2.5e-10   7.4e-07      21      84 ..     132     201 ..     122     211 .. 0.81
   2 ?   -0.7   0.0      0.37   1.1e+03     115     153 .]     300     339 ..     276     339 .. 0.81
   3 ?   -2.7   0.1       1.5   4.5e+03      16      52 ..     418     452 ..     410     453 .. 0.65

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.5e-10
                   EECETTTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHH..HHHTGGGHHHHHHTT-SEEEEEEE-SB CS
  TPP_enzyme_C  21 yltsgglgtmGyglpaAiGakla....kpdrevvaivGDGg..flmilqelatavrrnlpitvvvlnNeg 84 
                    ++  g g+   +++aA+G++la     ++r+v a++GDG+    m ++++  av++n++++vv+ +N +
    EGE24968.1 132 QYDTFGVGHSSTSISAALGMSLAarllGENRTVAAVIGDGAmtGGMAFEAMNDAVQQNADLLVVLNDNDM 201
                   445567888889999******9534434589*********9645677*********************75 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.37
                   HHHHHTTSEEE.EESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C 115 klaealGakga.rvekadveeleealkealekkgpaliev 153
                   +l +a+G + +  ++ +d+ +l ++l++a + kg  li+v
    EGE24968.1 300 NLFKAIGFTYLgPYDGHDLPKLIQVLERAKQLKGAILIHV 339
                   56677777755566788889999************99997 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.5
                   SSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEE CS
  TPP_enzyme_C  16 krprsyltsgglgtmGyglpaAiGaklakpdrevvai 52 
                   k p+++++ ++   + ++l+a+++ + +   ++vvai
    EGE24968.1 418 KYPKRFFDVAIAEQHAVTLAAGMATSGK--IKPVVAI 452
                   4478888877777777777777766643..2477776 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.7e-08   0.00011     101     167 ..     137     205 ..     102     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.7e-08
                 SSTTTHHHHHH..HHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTE CS
       E1_dh 101 givgaqvplva..GialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisT 167
                 g  ++  ++ a  G+ laa+  g++++++++iGDgA   G ++ea+n a   ++  + v + N   is 
  EGE24968.1 137 GVGHSSTSISAalGMSLAARLLGENRTVAAVIGDGAMTGGMAFEAMNDAVQQNADLLVVLNDNDMSISA 205
                 4444444444446*******************************************9999999999986 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.8   2.8e-05     0.085      23     189 ..      66     205 ..      60     216 .. 0.67
   2 !    3.9   0.0    0.0073        22     202     249 ..     301     347 ..     292     361 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.8e-05
                      S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS-SS--TTTSTT--S---STTH CS
  Transketolase_N  23 GhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgsktpGhPelghtagvevttGPLGq 116
                      Gh Ga lg+++++ +l+  l  + P        D+ v   Gh +   Y+ ++LtG    l  ++s   l   t   Pe ++++      G    
       EGE24968.1  66 GHFGANLGVVELTIALHAVLN-T-P-------YDKLVWDVGHQA---YAHKVLTGRRERLPSIRSKDGL---T-AFPEREESQYDTFGVGHSST 143
                      666666666666666654322.2.2.......366677777764...7777777766555555544333...3.35666666665556677777 PP

                      HHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTE CS
  Transketolase_N 117 GianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidG 189
                       i++a g++la + l ++            + +++gDg +  G++ ea++ a +++ + L+vl  dn++si  
       EGE24968.1 144 SISAALGMSLAARLLGEN----------RTVAAVIGDGAMTGGMAFEAMNDAVQQNADLLVVLN-DNDMSISA 205
                      777777777777777653..........3467899****************9999988888775.57788765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0073
                      HHHHTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTS CS
  Transketolase_N 202 rfeaygWhvievedgedveaikaaieeakaekdkPsliklrtviGygs 249
                       f+a g+  +   dg+d+ ++ + +e+ak+ k    li+++t+ G g 
       EGE24968.1 301 LFKAIGFTYLGPYDGHDLPKLIQVLERAKQLK-GAILIHVHTIKGKGF 347
                      599999999999*****************995.578*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5163.78
//
Query:       EGE24969.1  [L=63]
Description: hypothetical protein EA1_06806 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 473.47
//
Query:       EGE24970.1  [L=202]
Description: GTP cyclohydrolase II [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-63  212.1   0.0      4e-63  211.9   0.0    1.0  1  GTP_cyclohydro2  GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> GTP_cyclohydro2  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.9   0.0   2.2e-67     4e-63       5     163 .]       7     169 ..       3     169 .. 0.96

  Alignments for each domain:
  == domain 1  score: 211.9 bits;  conditional E-value: 2.2e-67
                      EEEEEETTEEEEEEEE--.....EEEEEE-...........EEEEEE--HHHHHS-B--TTTTTHHHHHHHHHHHH-.EEEEEE--TTTTTHHH CS
  GTP_cyclohydro2   5 eaklptrfgefrliayedkvdgkehlalvkgdi......pvlvRvHsecltgDvlgslrcdcgeqldealeliaeegrGvlvylrqegrgigll 92 
                      +aklpt +gef+++++e++ dg+eh+ l +g +      p l+R+HsecltgD++gsl+cdcg+ql++a+ +i+++g G+++ylrqegrgigl 
       EGE24970.1   7 KAKLPTVHGEFDIHIFEND-DGQEHILLSTGLPnhtdrlP-LIRIHSECLTGDAFGSLKCDCGPQLNAAMSAIQSHGVGAILYLRQEGRGIGLT 98 
                      799*************776.88********9999999866.7*******************************99******************* PP

                      HHHHHHHHHHCT--HHHHHHHHT--S-----HHHHHHHHHTT--EEEEE-S-HHHHHHHCTT....SEEEE CS
  GTP_cyclohydro2  93 nklkayalqdeglDTveanlalglpadardygiaaqILkdlgvkkirLlTnnpekveaLegfgievvervp 163
                      nk++ayalqd+g+DT+eanl lglpadar+y+++ ++L+++g++++ L+Tnnp+kv++L++ gi+vver+p
       EGE24970.1  99 NKIRAYALQDQGHDTLEANLLLGLPADARTYEMCQAMLAHVGINQVALMTNNPNKVNELNELGITVVERIP 169
                      *********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1448.50
//
Query:       EGE24971.1  [L=320]
Description: coproporphyrinogen III oxidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.6e-119  396.3   0.1   6.4e-119  396.1   0.1    1.0  1  Coprogen_oxidas  Coproporphyrinogen III oxidase


Domain annotation for each model (and alignments):
>> Coprogen_oxidas  Coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.1   0.1  3.6e-123  6.4e-119       2     296 .]       8     314 ..       7     314 .. 0.95

  Alignments for each domain:
  == domain 1  score: 396.1 bits;  conditional E-value: 3.6e-123
  Coprogen_oxidas   2 veellkelqdeivkaleeld........gkakfkedewereeggggisrvledgkvfekagvnvsvveg.klpesavkqmraekkeeleeleff 86 
                      v+e+l +lq+ iv+ale+ +        +++kf +d+wer+egggg s+vl+ g+v+ekagv +s+++  ++p+sa+ ++     +el +++ +
       EGE24971.1   8 VREFLLNLQQAIVHALENQEnsggfdgrTDTKFIADTWERPEGGGGCSCVLSGGQVIEKAGVMFSHIHIkQMPASATVRH-----PELVGAQAQ 96 
                      6899****************66666665559*************************************989999999888.....99******* PP

  Coprogen_oxidas  87 aagvslvihprnPlvPtvhlnyryfeaee...kkkawWFgGgaDLtPsylfeedavhfHktlkeacdkhdkelypkfKkwcDeyFyikhRkeaR 177
                      a+gvslv+hp+nP+vPt h+n+r+f a+    ++  wWFgGg+DLtP+y++ +d++h+H+++ e+c+++++e+ypk+K+wcDeyFy+khR+e+R
       EGE24971.1  97 ALGVSLVVHPKNPYVPTSHANVRLFVATPtdgSAPIWWFGGGFDLTPFYPNLNDVKHWHQVAYELCQPFGDEVYPKYKTWCDEYFYLKHRHERR 190
                      ***************************876665789********************************************************** PP

  Coprogen_oxidas 178 GvGGiffddlkes.....aeelfafvksvgeaflpaYlpivekrkdtpyteeerewqllrrgryveFnLvyDrGtkfGLqtegrvesiLmslPp 266
                      GvGG+f+dd+++      + ++f+f+++vg+ +l+  +pi e++k+++yte+er++ql+rrgryve+nLv+DrGt fGLq++gr+esiL+s+Pp
       EGE24971.1 191 GVGGLFYDDMNTAstnwdFMTCFKFMQAVGQGYLDGIIPIFEHNKHRSYTEHERQFQLYRRGRYVEYNLVFDRGTLFGLQSNGRTESILVSMPP 284
                      ***********555667799************************************************************************** PP

  Coprogen_oxidas 267 tarweyelepeegseeaellevlkkpreWv 296
                       a wey++ep++g++e el++++ kp++W+
       EGE24971.1 285 LAAWEYRYEPKQGTPEFELTDFYLKPQDWL 314
                      *****************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2410.96
//
Query:       EGE24972.1  [L=152]
Description: cytochrome c class II Msp22 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-27   94.7   3.6    8.5e-27   94.4   3.6    1.1  1  Cytochrom_C_2  Cytochrome C'


Domain annotation for each model (and alignments):
>> Cytochrom_C_2  Cytochrome C'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   3.6   4.8e-31   8.5e-27       2     121 .]      32     150 ..      31     150 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 4.8e-31
                    HHHHHHHHHHHHHHHHHHHHHHHTTSST--HHHHHHHHHHHHHHHCSGGGGC-TTGSSSSS--B-THHHHTHHHHHHHHHHHHHHHHHHH.HHHHC CS
  Cytochrom_C_2   2 aikaRqalfksigknmgklgamlkgeapydaeavaaaaealaalakklpalFpegsdkgektkakpeiWedkekfkakaaaleeaaaeLa.aaaka 96 
                    +++ R +l+k+++++ + ++am+++   +da +++++a+ +a++ ++++ +F+ + ++g   +ak+eiW+d+e+fkak++a+++++++La aa++a
     EGE24972.1  32 QVEDRAKLMKDWRHANEGMKAMIEDPSRFDAITFKERADFIADTNATMWVHFEGEMAQG--GHAKDEIWTDPEGFKAKIEAFTSSINALAlAASEA 125
                    6899************************************************9999995..8****************************888888 PP

                    TSHHHHHHHHHHHHHHHHHHHHHHB CS
  Cytochrom_C_2  97 gdlaalkaafgkvgksCkaCHdkyR 121
                    +++a+++a++g+++++C +CH++y+
     EGE24972.1 126 ASAADVEASYGEMASQCGSCHKAYK 150
                    ************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1136.57
//
Query:       EGE24973.1  [L=43]
Description: hypothetical protein EA1_06836 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 350.46
//
Query:       EGE24974.1  [L=365]
Description: LysM domain protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-10   39.5   3.1    7.2e-10   39.1   0.0    2.5  2  SPOR       Sporulation related domain
    3.3e-09   36.7   0.0    6.7e-09   35.7   0.0    1.6  1  LysM       LysM domain
  ------ inclusion threshold ------
       0.04   13.9  25.5      0.057   13.4  25.5    1.2  1  TFIIA      Transcription factor IIA, alpha/beta subunit
        8.4    6.9  11.3         22    5.5   3.4    2.8  2  Wound_ind  Wound-inducible basic protein family


Domain annotation for each model (and alignments):
>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.9      0.49   2.2e+03      54      65 ..     145     156 ..     139     170 .. 0.65
   2 !   39.1   0.0   1.6e-13   7.2e-10       2      65 ..     289     349 ..     288     358 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.49
                 CCHHHHHHHHCH CS
        SPOR  54 reeAqaalkkLk 65 
                  eeA++a++ Lk
  EGE24974.1 145 AEEAKKAAEMLK 156
                 356666666666 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 1.6e-13
                 TTBB--BS-EES-HHHHHHHHHHCCHHT--...EEECCSSSCEEEEESSBCTCCHHHHHHHHCH CS
        SPOR   2 sggytvQvgafsseanAerlaakLrakgfaaavavvsgggglyrVrvGpfasreeAqaalkkLk 65 
                 s++ytvQv+ + ++++ +++++k r++g++   +++s++    r++vG+ +++eeA+a++ k++
  EGE24974.1 289 SERYTVQVAISPDKDRVDEVVKKYRDAGYK---VTTSNTSRGLRILVGNEKTEEEAKALRTKIA 349
                 679***************************...*****************************99 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.5e-12   6.7e-09       1      44 []     198     241 ..     198     241 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.5e-12
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44 
                 + V++G+T  +IA+rygi+v +l eaN++  +d +++ +++kiP
  EGE24974.1 198 HDVQRGETWQGIANRYGISVAALVEANGVTRNDILRAERRIKIP 241
                 66*************************9999999*********9 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4  25.5   1.3e-05     0.057     147     363 ..      26     308 ..       2     320 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
       TFIIA 147 qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaq.sqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqe.esqqaqqasqeqvagsqvessqt 243
                 + +++++ ++ p+ q+   s  ++a+ +v++l+a    + + lae+q   e+++ q+q+q++++ ++q +  +q+ e ++ ++      +g+ ++ +qt
  EGE24974.1  26 NDTQTTKSVQTPQ-QI--PSDTKVAKPVVQPLTADiATEEKLLAEKQRVREAHTLQMQKQAAALLEEQNNARKQAlE-KASAE-----ANGRMTNDTQT 115
                 2222222232222.22..36788888888888888555555555555554433333333333333333333332221.11111.....12222333333 PP

       TFIIA 244 dgaedaleeespv...........legelsaeeeagaqkeelsreeidri.re..............ealkakelekeskkkkraeessla........ 308
                  +a++a+++e  +           +e+  +aee++          ++ ++ ++              +      +e++++          +        
  EGE24974.1 116 VSADSAAKSEL-IaaptvqtrpeaIEAARKAEEAK----------KAAEMlKNseqetkdekaktadK-----PTENKAE----------Nkkenkntq 188
                 33332222211.11211122211111111111111..........11111111111111111111111.....1111111..........011122222 PP

       TFIIA 309 .................................................................dlseilqlDGagddsdeeeeeeesdedsdsessd 342
                                                                                  +++e +  DG + ++++ +++++++++s+s+ss+
  EGE24974.1 189 tkapakagthdvqrgetwqgianrygisvaalveangvtrndilraerrikipsasqiarlerdnKARESASKDGNKKSDNQPQSKTDKKTESKSQSSQ 287
                 334455667788899999999999999999999999999999999999999999999999999888999999999998888877777777777766666 PP

       TFIIA 343 dedeqveEDplNSdDDvdded 363
                  ++  + + ++  d D  de 
  EGE24974.1 288 TSERYTVQVAISPDKDRVDEV 308
                 655556678888885555544 PP

>> Wound_ind  Wound-inducible basic protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   3.4     0.005        22      16      39 ..     157     181 ..     150     183 .. 0.82
   2 ?    5.0   1.0    0.0072        32      24      40 ..     252     271 ..     241     273 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.005
   Wound_ind  16 ssrshk.gkedKrks..kPgeKaSdNK 39 
                  s   +  k++K+k+  kP e + +NK
  EGE24974.1 157 NSE--QeTKDEKAKTadKPTENKAENK 181
                 443..33899***********999999 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0072
   Wound_ind  24 edKrks...kPgeKaSdNKP 40 
                 ++K++    k g+K+SdN P
  EGE24974.1 252 DNKAREsasKDGNKKSDNQP 271
                 5576655668888*****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3080  (0.171789); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.12u 0.33s 00:00:01.45 Elapsed: 00:00:00.51
# Mc/sec: 2159.51
//
Query:       EGE24975.1  [L=395]
Description: NnrS family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-99  331.2  59.4    1.1e-98  331.1  59.4    1.0  1  NnrS             NnrS protein
  ------ inclusion threshold ------
       0.19   11.0   0.2       0.34   10.2   0.2    1.4  1  Engrail_1_C_sig  Engrailed homeobox C-terminal signature doma


Domain annotation for each model (and alignments):
>> NnrS  NnrS protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.1  59.4  1.2e-102   1.1e-98       1     366 []      12     389 ..      12     389 .. 0.96

  Alignments for each domain:
  == domain 1  score: 331.1 bits;  conditional E-value: 1.2e-102
        NnrS   1 allslgFRpfFllaalfaalavllWllvlaga..a....vppllwHaheMlfGfalavvaGFLlTavpnWtgtppvkgrplallvllwlaarlallllg 93 
                 a+++lgFR+fF  aa++a+++++lWl+v++g   +    ++p +wH+heM+fG+ +avvaGFLlTav nWtg ++++g++l l++l wl ar+++++l 
  EGE24975.1  12 AIFNLGFRIFFASAAVYAVISMVLWLFVYRGGvfSahmsIAPQYWHGHEMVFGYSMAVVAGFLLTAVGNWTGKTMPSGQQLYLIWLPWLFARIIFIVLP 110
                 589***********************999999763688999*****************************************************99998 PP

        NnrS  94 ..lalaavldlafllllalllarellaakqwrnlavlalllllalanllfhlallglatalasaglrlalllvlllillvggRvipfftanal..elka 188
                   l+l +++d++f +l+++ + ++++++kqwr++++l  ++l+++anl++++a lg++ ++  ++l+l+ ++++ l+l++g+Rv+pff+++++   +++
  EGE24975.1 111 qfLWLGVLADIVFTILFLISITKPVIKTKQWRQMGILSKIILMLIANLFCLVATLGWHIGW-YYALYLGAFVIIGLVLTIGRRVTPFFISRGVgyAFEP 208
                 8658*************************************************99888888.568********************************** PP

        NnrS 189 rpsprldrlalallllalllell....lllaaalalaaallqlvrlarwrlwrtlrepllwvLhlgylwlplgllllglaalgaglvlesaalHaltvG 283
                 r+++++dr++l+++++++lle++    ll++ ++al++al+q++rl +w+++ ++++pllw+++++++++++g l++ l  ++   +++s+a+H+++vG
  EGE24975.1 209 RNNHYIDRISLISFVIFFLLEVFasqqLLAS-LCALVCALVQAWRLQGWYTRGIWKKPLLWSMFISMACIVFGQLMYFLRIFQ-FGITNSLAMHMMAVG 305
                 ***********************77744444.6***********************************************997.57788********** PP

        NnrS 284 alglmilavmtrvslgHtgrpl.vapklvvlaflllllaallRvlaplllpaalllllllaallWilafalfllryapillrpR 366
                 ++g++ l++m+rvslgH+gr++ ++pk+v +a+ ll +a+++Rv++p+l+p++l+++++  ++lW++af+l  ++y++i  +pR
  EGE24975.1 306 GIGILSLSMMARVSLGHSGRSIhQPPKTVPWAISLLSVATVFRVILPWLMPQHLVIWIIHTQILWLIAFFLLSVSYMNIWRTPR 389
                 **********************999******************************************************99998 PP

>> Engrail_1_C_sig  Engrailed homeobox C-terminal signature domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   3.8e-05      0.34       3      16 ..     292     305 ..     291     305 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 3.8e-05
  Engrail_1_C_sig   3 GqkNtLAlqLMAQG 16 
                      G  N+LA++ MA G
       EGE24975.1 292 GITNSLAMHMMAVG 305
                      788*********66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1055  (0.0588432); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2634.57
//
Query:       EGE24976.1  [L=442]
Description: bifunctional protein FolC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-15   57.9   0.0    3.6e-15   56.5   0.0    1.8  1  Mur_ligase_M  Mur ligase middle domain
  ------ inclusion threshold ------
      0.014   15.6   0.2       0.21   11.8   0.1    2.5  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain
      0.056   13.6   0.1      0.089   13.0   0.1    1.2  1  MnmE_helical  MnmE helical domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0     6e-19   3.6e-15       1     141 [.      55     230 ..      55     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 6e-19
                   EESSS-HHHHHHHHHHHHHCTEEEEETTC.........................................SS-THHHHHHHHHHHHHTT-SEEEEE- CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvg.........................................ttnneiglpktlaemekkeaeyavlEv 56 
                   v+GtnGK +tt+ iaai+e+ g ++++ +                                         ++ + ++l ++ +  + k+++++vlE+
    EGE24976.1  55 VAGTNGKGSTTKTIAAICEACGLKTALYQsphlvsftericingneisesdlvaafeavenarvaknvtlSFFEMTTLAAFWHFNQ-KKCDVWVLEI 150
                   89*******************88888888889****************************99999988876666666666665555.5********* PP

                   -HCHHHCTTTCCHCBESEEEE---TSTTHHHH.SSHHHHHHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTC.EEEEESSS CS
  Mur_ligase_M  57 sshglgekrlegllkpdvavitnispdHldfh.gtlenyaeaKaelferlkeegiavinaddpyakelikklkkakvk.vvtfglek 141
                   +    g   + ++++pdvavitni+ dH+d + +++e++ ++Ka ++++    +i vi    + + ++  +l+++  k v++ g + 
    EGE24976.1 151 GLG--GRLDVVNIINPDVAVITNIGIDHVDWLgDDIERIGQEKAGIIRE----NIPVILGARQ-LPNSVHELANRLTKhVHQLGVNY 230
                   ***..77888888*****************88789***********962....2334443333.23444444444344355555554 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   3.6e-05      0.21       4      77 ..     291     366 ..     288     379 .. 0.79
   2 ?    0.5   0.0      0.13   7.5e+02      31      52 ..     408     429 ..     401     440 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.6e-05
                   SSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSS.......SSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE.EEE CS
  Mur_ligase_C   4 RlevvgeadgvtvidDyahnpdslsaalkalreiap.......dkrlilvfgpggelgertrtfhdefgrlasalads.lvv 77 
                   R+++    ++ ++i D ahn ++++  l+  ++ ++       d +l ++f  +g+   ++ +  + ++ + +al+d+ + +
    EGE24976.1 291 RFDQRII-NDRHWIFDVAHNSHGIRFFLAQWADEWHkhkkiypDAKLKVIFSMLGD---KDVD--AVLEVIKAALDDKkISI 366
                   5555444.5689*******************99999999999999999****9666...8888..55555666666664555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.13
                   HHHHHHHSSSSEEEEEEEESTT CS
  Mur_ligase_C  31 lkalreiapdkrlilvfgpgge 52 
                    +++ + a+++ li+vfg++  
    EGE24976.1 408 AQSVSTDASTQDLIVVFGSFHT 429
                   444444445899******7544 PP

>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.5e-05     0.089      30     161 ..     208     392 ..     205     429 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
                   xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
  MnmE_helical  30 lskkikelrekllellaeleaaiDFpe.edleelseeelaekleelkeelekllatakrgellreGik............................. 96 
                   l + ++el ++l++ + +l ++ D+ e ++   +s+++l  +l + k +l++ ++ +    +l++Gik                             
    EGE24976.1 208 LPNSVHELANRLTKHVHQLGVNYDYMEqDETWIFSNAALTIQLPKPKLSLQNAVNAVA--AVLESGIKihldsvidglhqvqlagrfdqriindrhw 302
                   567899*********************5557777888888889999999999888876..9********************************9999 PP

                   ...................xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx..xx.xxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical  97 ...................Dllkeke...ekeeeevlkiSaktgegieeLeeaike.leleei..ee.eplltnaRhkealekalealeea 161
                                      D  ++++    +++ +v+ +S++ ++ +++ +e ik+ l  ++i  ++ ++ ++n+     l++ l ++++ 
    EGE24976.1 303 ifdvahnshgirfflaqwaDEWHKHKkiyPDAKLKVI-FSMLGDKDVDAVLEVIKAaLDDKKIsiHDwSVAAINHPRAMDLQTLLGHVHTH 392
                   9977777777777777777322222245333444444.88888888999999998844443433433456666666666666666666532 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3111.88
//
Query:       EGE24977.1  [L=185]
Description: hypothetical protein EA1_06856 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-09   36.1   1.3    2.4e-08   33.9   0.0    2.5  2  DUF2059   Uncharacterized protein conserved in bacteria (DUF2
     0.0022   17.9   0.8     0.0023   17.8   0.8    1.1  1  DUF445    Protein of unknown function (DUF445)
     0.0069   15.9   0.1       0.01   15.4   0.1    1.3  1  CotH      CotH kinase protein
  ------ inclusion threshold ------
      0.027   14.5   0.9      0.058   13.4   0.9    1.5  1  DUF1160   Protein of unknown function (DUF1160)


Domain annotation for each model (and alignments):
>> DUF2059  Uncharacterized protein conserved in bacteria (DUF2059)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.3      0.21   9.3e+02      39      59 ..      68      88 ..      63      89 .. 0.78
   2 !   33.9   0.0   5.2e-12   2.4e-08       6      45 ..     107     146 ..     102     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.21
                HHHHHHHHHHHHHHHHCTTHH CS
     DUF2059 39 epaataesmqaaqeaaqelap 59
                 p atae  +aa ++ +++++
  EGE24977.1 68 YPDATAEQIAAADQLIEDMLK 88
                588999999999999888765 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 5.2e-12
                 HHHHHHHHHS-HHHHHHHHHHHHSHHHHHHHHHHHHHHHH CS
     DUF2059   6 llaaiyaktfteaelkailaFYkSPlGkkllekepaatae 45 
                  + +  +++ft+++++a+++FY+SP+Gk + +k+ a  ++
  EGE24977.1 107 VFNKTVKQHFTQQQMDALIEFYSSPIGKSIHKKQMAFNRD 146
                 55566789**********************9999776665 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.8   5.1e-07    0.0023     169     287 ..      39     160 ..      17     185 .] 0.82

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.1e-07
      DUF445 169 elieeesgklv...lesivsmflreltsilekvksdpdhllreeedkkvreliadllndpelaakveklkkkklsdlevqeyeealwealkdlllkdln 264
                 ++ ++ ++ +v   ++s  +++l ++++ + +  +++   +++ +++ +++ ++++ ++p++ +kv+++ +k++++   q++ +al e  ++ + k++ 
  EGE24977.1  39 DFKNDFEQGVVigyINSAKTRILLSIKKAYPDATAEQIAAADQLIEDMLKQPAERVSENPHFYQKVQQVFNKTVKQHFTQQQMDALIEFYSSPIGKSIH 137
                 44344433333788999999999999************************************************************************* PP

      DUF445 265 eeesllrerisklleklgeklae 287
                 ++++++++ + + l++++ ++ e
  EGE24977.1 138 KKQMAFNRDLINSLSNIVMEMDE 160
                 *8899998888888887766555 PP

>> CotH  CotH kinase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.2e-06      0.01     244     291 ..      92     139 ..      70     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.2e-06
        CotH 244 rrlldnpefrerlkarleelldgvlseerleakidalhaliapelerd 291
                 +r+ +np f +++++ +++++++ ++++++ a i+ + + i++++ + 
  EGE24977.1  92 ERVSENPHFYQKVQQVFNKTVKQHFTQQQMDALIEFYSSPIGKSIHKK 139
                 68999*************************************999776 PP

>> DUF1160  Protein of unknown function (DUF1160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   1.3e-05     0.058      17      75 ..      82     143 ..      71     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
     DUF1160  17 vvntelkkylkelerdetfrkklvkvlkmFiereievediyeiveavdgi...kLtkkQidy 75 
                 +++  lk+  + + ++ +f++k ++v+++ ++++ +++++  ++e   +     + kkQ+ +
  EGE24977.1  82 LIEDMLKQPAERVSENPHFYQKVQQVFNKTVKQHFTQQQMDALIEFYSSPigkSIHKKQMAF 143
                 556667777778889****************************9977643343566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1391  (0.0775838); expected 358.6 (0.02)
Passed bias filter:                      723  (0.0403257); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.29s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1304.52
//
Query:       EGE24978.1  [L=293]
Description: acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-13   50.3   0.1    1.8e-13   50.0   0.1    1.1  1  Carboxyl_trans  Carboxyl transferase domain
    0.00041   20.3   2.1    0.00075   19.5   2.1    1.4  1  zf-ACC          Acetyl-coA carboxylase zinc finger domain
  ------ inclusion threshold ------
      0.019   14.5   0.8       0.21   11.2   0.1    2.3  2  zf_UBZ          Ubiquitin-Binding Zinc Finger
      0.028   14.3   0.4      0.061   13.2   0.4    1.6  1  HlyD_D4         Long alpha hairpin domain of cation efflux sy
       0.03   14.3   0.2      0.061   13.3   0.2    1.5  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
      0.038   14.0   0.3      0.082   12.9   0.1    1.6  2  HypA            Hydrogenase/urease nickel incorporation, meta
      0.064   12.7   0.4         11    5.6   0.0    2.3  2  zf-ribbon_3     zinc-ribbon domain
      0.068   13.3   1.5        6.2    7.0   0.1    2.4  2  Zn-ribbon_8     Zinc ribbon domain
      0.089   12.8   1.1       0.17   11.9   1.1    1.3  1  zinc-ribbons_6  zinc-ribbons
      0.096   12.7   0.1       0.23   11.5   0.1    1.6  1  Gin             Inhibitor of sigma-G Gin
       0.12   12.4   1.9       0.72    9.9   1.8    1.8  2  DZR             Double zinc ribbon


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.1   1.1e-16   1.8e-13      35     183 ..     106     252 ..      95     290 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 1.1e-16
                     HHHHHHHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEEECHHHHHHHHHTEEEEEEEEE-ESSSGHHSSHHHHHHHHHHHHHHHHH CS
  Carboxyl_trans  35 telgrkkklprdgvvtgsGaviGravevvaqdktvlggslgpakgekllkaqeeaikagepligindsgGaegriqegveslrgsGkifgenska 129
                     ++++++k   ++g+v   G+ +       a d+ ++ggs+g + g + ++a e+a++++ pl+ +  sgGa  r+qeg  sl ++++  ++  ++
      EGE24978.1 106 MKEAQNKTGESEGLVVMAGKLKHLDIIACAFDFRFMGGSMGSVVGDRFVQAAEKALTENKPLVCFAASGGA--RMQEGLLSLMQMARTSAAIERL 198
                     444444555789999999999999999********************************************..********************** PP

                     HH.CS-EEEEESSEEETH.HHHHHHHTSEEEEETTEEEEESSTHHHHHHHHSSCC- CS
  Carboxyl_trans 130 sg.eIpqislvtgrcaGg.gaYlpalgdrvimveetskifltGpdvikkvlgreev 183
                        ++p+++++t +  Gg  a l+ lgd++i+  + + i+++G +vi++ +  e+ 
      EGE24978.1 199 RLaGVPYVVILTNPVYGGvTASLAMLGDVHIAEPK-AMIGFAGKRVIEQTVR-EVL 252
                     999************9984688999******9999.***********96544.433 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   2.1   4.6e-07   0.00075       2      26 .]      37      61 ..      37      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.6e-07
      zf-ACC  2 tKCpsCgemlykkeLernlyVCPkC 26
                t Cp C +++ +  L  n yVCP+C
  EGE24978.1 37 TECPNCHALITNTALILNQYVCPEC 61
                68*********************** PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.15   2.4e+02       4      13 ..      38      47 ..      36      51 .. 0.80
   2 ?   11.2   0.1   0.00013      0.21       1      18 [.      54      71 ..      54      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.15
      zf_UBZ  4 lCerCgkeip 13
                 C+ C++ i 
  EGE24978.1 38 ECPNCHALIT 47
                6*****9885 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00013
      zf_UBZ  1 dtylCerCgkeipeselq 18
                ++y+C++C++++ ++++q
  EGE24978.1 54 NQYVCPECDHHLTMTARQ 71
                58*********9998876 PP

>> HlyD_D4  Long alpha hairpin domain of cation efflux system protein, CusB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   3.7e-05     0.061      11      43 ..     177     205 ..     175     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHTT--HHHHHHHHHHHHHCT--H CS
     HlyD_D4  11 aaQeEYLalkelgdlaslldaareRlrLaGMpd 43 
                  +Qe  L l ++ +    + aa eRlrLaG p 
  EGE24978.1 177 RMQEGLLSLMQMAR----TSAAIERLRLAGVPY 205
                 57888888888877....899*********995 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   3.7e-05     0.061      19      55 ..      27      64 ..      20      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-05
  OrfB_Zn_ribbon 19 veevnpayTSktCseCgsknke.alsgrtfkCpnCgfe 55
                    + ++ +   S++C++C +  ++ al  ++++Cp+C ++
      EGE24978.1 27 TLTAVETEPSTECPNCHALITNtALILNQYVCPECDHH 64
                    556666777*********99999************997 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     5e-05     0.082      62      97 ..      28      66 ..      18      82 .. 0.74
   2 ?   -3.0   0.0       4.4   7.1e+03      28      51 ..     118     141 ..     106     163 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-05
                EEEEEE--EEEETTTS-EEECHH..H.HHS-TTTSSS-E CS
        HypA 62 LeieevpvkvrCreCgkefelee..k.alrCpkCgsadv 97
                L+  e++ +++C +C++ ++ ++    ++ Cp+C+++ +
  EGE24978.1 28 LTAVETEPSTECPNCHALITNTAliLnQYVCPECDHHLT 66
                777889999*******9999776552588*****99733 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.4
                 EEEEEEETTCT--HHHHHHHHHHH CS
        HypA  28 kvkvevGelsgvepeaLefafell 51 
                  + v  G+l++++  a +f f+++
  EGE24978.1 118 GLVVMAGKLKHLDIIACAFDFRFM 141
                 566777888888777777777665 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.012        19       4      12 ..      38      46 ..      36      51 .. 0.76
   2 ?    5.6   0.0    0.0067        11       4      13 ..      57      66 ..      55      70 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.012
  zf-ribbon_3  4 rCPnCGapl 12
                 +CPnC a++
   EGE24978.1 38 ECPNCHALI 46
                 899997754 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0067
  zf-ribbon_3  4 rCPnCGapls 13
                  CP+C+++l+
   EGE24978.1 57 VCPECDHHLT 66
                 6*****9765 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0038       6.2      23      34 ..      33      44 ..      24      48 .. 0.77
   2 ?    4.9   0.1     0.017        28       6      15 ..      56      65 ..      54      74 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0038
  Zn-ribbon_8 23 dapltaCPeCgs 34
                  +p t+CP+C++
   EGE24978.1 33 TEPSTECPNCHA 44
                 567788****97 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.017
  Zn-ribbon_8  6 YrCeeCghef 15
                 Y C eC+h  
   EGE24978.1 56 YVCPECDHHL 65
                 8888888865 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.1    0.0001      0.17       2      30 ..      38      69 ..      32      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
                    --SSS-S--EE-S...SEEE-TTT--EEEEEE CS
  zinc-ribbons_6  2 kCpeCqqelekrg...eqyhCeaCqedlkkea 30
                    +Cp+C++ ++++    +qy C +C+++l+++a
      EGE24978.1 38 ECPNCHALITNTAlilNQYVCPECDHHLTMTA 69
                    69999988887777889999999999988765 PP

>> Gin  Inhibitor of sigma-G Gin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00014      0.23       1      30 [.      39      68 ..      39      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                -TTT--EESSEE-SSS--EEHHHHHHHHHH CS
         Gin  1 CiiCekekeeGiiilgkfICeeCekkivnt 30
                C  C    ++  +il++++C eC + ++ t
  EGE24978.1 39 CPNCHALITNTALILNQYVCPECDHHLTMT 68
                6668888889999***********999876 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.1     0.001       1.7      27      48 ..      33      61 ..      20      62 .. 0.71
   2 ?    9.9   1.8   0.00044      0.72      15      41 ..      39      68 ..      36      71 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
         DZR 27 a..edrCpsCgekvdpearf.....CpeC 48
                +  ++ Cp+C++ ++++a +     CpeC
  EGE24978.1 33 TepSTECPNCHALITNTALIlnqyvCPEC 61
                24468899999888877766666678888 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00044
         DZR 15 CseCgtklkavaa....edrCpsCgekvdpe 41
                C++C + + ++ a    +++Cp+C++ ++++
  EGE24978.1 39 CPNCHALITNT-AlilnQYVCPECDHHLTMT 68
                66666665532.2366666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2088.51
//
Query:       EGE24979.1  [L=280]
Description: tryptophan synthase subunit alpha [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-81  271.0   0.1    7.6e-81  270.8   0.1    1.0  1  Trp_syntA     Tryptophan synthase alpha chain
    1.3e-05   24.8   0.1    2.9e-05   23.7   0.1    1.6  1  His_biosynth  Histidine biosynthesis protein
     0.0005   19.2   2.0     0.0098   14.9   1.2    2.3  2  IMPDH         IMP dehydrogenase / GMP reductase domain
    0.00093   18.7   0.3     0.0027   17.2   0.3    1.7  1  PcrB          PcrB family
      0.006   16.0   0.6      0.015   14.8   0.2    1.8  2  BtpA          BtpA family
     0.0063   15.7   0.3       0.13   11.4   0.1    2.5  3  DUF561        Protein of unknown function (DUF561)
  ------ inclusion threshold ------
      0.096   12.3   0.5        2.5    7.7   0.0    2.9  4  Pterin_bind   Pterin binding enzyme


Domain annotation for each model (and alignments):
>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.8   0.1     3e-84   7.6e-81       1     247 [.       9     258 ..       9     272 .. 0.92

  Alignments for each domain:
  == domain 1  score: 270.8 bits;  conditional E-value: 3e-84
                 HHHHHCTTB-EEEEEEETTSS-HHHHHHHHHHHHHCT-SSEEEE---S--TTS-HHHHHHHHCCCCTT--HHHHHHHHHHHHHHCSSS-EEEEE-CHHH CS
   Trp_syntA   1 faklkaenraafvpyvtagdpdleqsleilkalekagadviElGlpfsdPladGPvIqaanlraLakgvtlekvlelveevrkkevevPivlltylnlv 99 
                 f++l++ +++a++py++agdp  + +++++++l + gad+iE+GlpfsdP+adGP+I +a++raLa+gv+++++l++++++r++++++P+++++yln+v
  EGE24979.1   9 FETLRQAGKKALIPYIMAGDPCPDVTVDLMHKLVEHGADIIEVGLPFSDPMADGPIIAHAAERALAAGVSTRDALNMIAKFRQTNQTTPVLVMGYLNPV 107
                 778999********************************************************************************************* PP

                 CCC-HHHHCHHHHHCTEEEEEETTSBCCCHHHHHHHHH...HTT-EEEEEE-TTS-HHHHHHHHHH--S-EEEESTTC-SSTTSSB-TTHHHHHHHHHH CS
   Trp_syntA 100 lsygeerflaelkeagvdglivpDlPleeaeelveaak...kkglelvflvapttsderlkevveqaegfvYvvsraGvTgaenavaaevdelverlkk 195
                    g+++f + +++agvd+++++DlP++ea+ + + ++   ++ ++ +fl+aptt+ +r ++v+e+ +gf+Y+vs +GvTg  +   a v e v+++k+
  EGE24979.1 108 EIIGYDNFANLCADAGVDAILMVDLPPNEADGYAKSLTertDHPMNQIFLLAPTTKSDRRTKVIENCSGFIYYVSLKGVTGSGALDVAAVREQVAKIKQ 206
                 ******************************999877641126789****************************************************** PP

                 CTSS-EEEESSS-SHHHHHHHHTT-SEEEE-HHHHHHHHCTTTSHHHHHHHH CS
   Trp_syntA 196 ltavPvavGFGistkeqvkqvakvadGvivGSalvkkieeeaeekeqalekl 247
                  t+ Pv vGFGi++ + +k++ +vadG+ivGS lvk+ ++  +++++  +  
  EGE24979.1 207 QTTIPVCVGFGIRDGDSAKALGAVADGIIVGSELVKHFADCGHDEQKIQQAK 258
                 *************************************997444433333322 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   1.1e-08   2.9e-05      62     108 ..     198     243 ..     172     255 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.1e-08
                   HHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH- CS
  His_biosynth  62 ldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaavkn 108
                    + v++i ++++ipv+vG GIr+ +++ ++l a ad +i+g++ vk+
    EGE24979.1 198 REQVAKIKQQTTIPVCVGFGIRDGDSA-KALGAVADGIIVGSELVKH 243
                   467889******************955.567777*********9987 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.018        46     154     174 ..      33      53 ..       6     100 .. 0.88
   2 !   14.9   1.2   3.8e-06    0.0098     184     239 ..     185     240 ..     181     255 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.018
                 -SHHHHHHHHHTT-SEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 154 ataegakaLieagadavkvGi 174
                 +t + +++L+e+gad++ vG+
  EGE24979.1  33 VTVDLMHKLVEHGADIIEVGL 53 
                 57788899***********96 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.8e-06
                 HHCSB---HHHHHHH.HHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCC CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 184 vvagvGvpqltAvae.vaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsll 239
                  v+g G   + Av e va++ +++ +pv+   Gi+ +gd +kAl a ad +++Gs l
  EGE24979.1 185 GVTGSGALDVAAVREqVAKIKQQTTIPVCVGFGIR-DGDSAKALGAVADGIIVGSEL 240
                 589**********75378899999**********8.69****************977 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3     1e-06    0.0027     162     215 ..     189     244 ..     178     260 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1e-06
                 TTSSS..-H.HHHHHHHHHHSSSEEEEESS--SHHHHHHHHCCSSEEEE-CHHHHHH CS
        PcrB 162 sGale..dv.eevialkkklekarlivGGGirsaEkAkevveaADvivvGnvveekd 215
                 sGal+   v e+v+++k + +++ + vG Gir++++Ak     AD i+vG  + +++
  EGE24979.1 189 SGALDvaAVrEQVAKIK-QQTTIPVCVGFGIRDGDSAKALGAVADGIIVGSELVKHF 244
                 55543113445555554.45678899************99999*******9776665 PP

>> BtpA  BtpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.56   1.4e+03      37      48 ..     118     129 ..     112     146 .. 0.83
   2 !   14.8   0.2   5.8e-06     0.015     172     244 ..     177     258 ..     158     267 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.56
        BtpA  37 aleegGvDavil 48 
                   +++GvDa+++
  EGE24979.1 118 LCADAGVDAILM 129
                 5689*****987 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 5.8e-06
        BtpA 172 ladavilsGkatGgevdleel....klaketvkvkvlvgsGvseenlekll.siadGvivgtsikkd....GkianaiDker 244
                  +  v l G +  g+ d++ +     ++k+   ++v vg G+   + +k l  +adG+ivg+ + k+    G+  ++i +++
  EGE24979.1 177 FIYYVSLKGVTGSGALDVAAVreqvAKIKQQTTIPVCVGFGIRDGDSAKALgAVADGIIVGSELVKHfadcGHDEQKIQQAK 258
                 555566777777777777655100055566666*********887666555279********99887444455555555555 PP

>> DUF561  Protein of unknown function (DUF561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.058   1.5e+02      70      88 ..      34      52 ..      29      56 .. 0.85
   2 ?   -2.7   0.0         1   2.6e+03      32      66 ..      65     100 ..      64     109 .. 0.73
   3 !   11.4   0.1   5.1e-05      0.13      43      84 ..     191     233 ..     181     245 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.058
      DUF561 70 eakllleavkaGadlveiG 88
                   l+ + v  Gad++e+G
  EGE24979.1 34 TVDLMHKLVEHGADIIEVG 52
                5667889999********9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
      DUF561  32 iaraaekakatyvDiaadpklvkkvk.svsniPiCv 66 
                 ia+aae+a a+ v    + +++ k + +++  P+ v
  EGE24979.1  65 IAHAAERALAAGVSTRDALNMIAKFRqTNQTTPVLV 100
                 788888888888888877788877773455566655 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 5.1e-05
      DUF561  43 yvDiaadpklvkkvksvsniPiCvs.aveakllleavkaGadl 84 
                  +D+aa ++ v k+k+ + iP+Cv  ++     ++a  a ad 
  EGE24979.1 191 ALDVAAVREQVAKIKQQTTIPVCVGfGIRDGDSAKALGAVADG 233
                 58**********************6356665555555555555 PP

>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00099       2.5      23      51 ..      34      62 ..      30      75 .. 0.81
   2 ?   -2.9   0.0       1.7   4.3e+03     108     124 ..     114     130 ..     101     154 .. 0.71
   3 ?   -1.7   0.0      0.71   1.8e+03     185     203 ..     197     215 ..     188     216 .. 0.59
   4 ?    0.6   0.0      0.15   3.8e+02     169     196 ..     245     272 ..     238     277 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00099
                 HHHHHHHHHHTT-SEEEEESS-TSTT--C CS
  Pterin_bind 23 alaqarkmveeGAdilDiggestrPgaer 51
                  ++  +k+ve GAdi+ +g   + P+a+ 
   EGE24979.1 34 TVDLMHKLVEHGADIIEVGLPFSDPMADG 62
                 578889**************999999975 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.7
                  THHHHHHHHT-EEEEES CS
  Pterin_bind 108 kmlelvaeagaavvvmh 124
                  ++++l+a+ag+  ++m 
   EGE24979.1 114 NFANLCADAGVDAILMV 130
                  56667777777777774 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.71
                  HHHTHHHHHHTTSSEBEEE CS
  Pterin_bind 185 llrrldelrealevpvllG 203
                  + +++ ++++++ +pv +G
   EGE24979.1 197 VREQVAKIKQQTTIPVCVG 215
                  3445566666666666665 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.15
                  EETTTTSSTTHHHHHHHHHTHHHHHHTT CS
  Pterin_bind 169 lDpgigfgkteehnlellrrldelreal 196
                   D+g+  +k ++ +  ll+++delr+ l
   EGE24979.1 245 ADCGHDEQKIQQAKAGLLNKMDELRKSL 272
                  799*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2165.36
//
Query:       EGE24980.1  [L=404]
Description: tryptophan synthase subunit beta [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-46  156.8   0.8    9.6e-46  156.5   0.8    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.8   5.3e-50   9.6e-46       4     294 .]      61     386 ..      58     386 .. 0.86

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 5.3e-50
                 CSSS--EEEECCTCCCCCCE.EEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-...HHHHHHHH CS
        PALP   4 gigpTPlvrlprlskelgvp.lflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadas...pekvallr 98 
                 + +pTPl  ++rl++++g++ +f+K+E+ln+tg++K++      + +k   +++ ++e+++G+hg+a+A +aa+lGl++++++ ad+    + +v ++r
  EGE24980.1  61 VGRPTPLYFAERLTQQVGGAqIFFKREDLNHTGAHKVNNTIGQALLAKMVGKKRIIAETGAGQHGVATATIAARLGLECVVYMGADDVerqKMNVYRMR 159
                 689*************************************977777777769999999999***************************65559****** PP

                 HTT-EEEEECCHHHHHHHHHHHHHHH.....STTCEE--TTT..SHH...HHHHHHTHHHHHH....HHTTTTEEEEEEE-SSSHHHHHHHHHHHHHST CS
        PALP  99 llGaevvevggdydeavaaaaelaae.....gegaylvsqfd..npt...viegygtiglEil....eqlggkpdavvvpvGgGgliaGiaaglkerrp 183
                 llGa+vv v ++  + ++a++e+ ++     ++ +y++ +    +p+   v + ++ ig E      +++g+ pda+v++vGgG+++ G+   +   + 
  EGE24980.1 160 LLGATVVPVTSGSRTLKDAMNEAMRDwvanvDTTYYIIGTVAgpHPYpmlVRDFQAIIGREARiqhlQKTGRLPDALVACVGGGSNAIGLFYDFLN-DH 257
                 *********888777777777777777777899999999999554448856666********766668888************************6.66 PP

                 T-EEEEEEEC....TTCGGTTCCS..S.SS..B................SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B CS
        PALP 184 dvrvigvepe....gsdalarslragrrvtvpvs...............dtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivv 263
                 +v ++gve++      +  a+ l+agr+  ++                 ++i  gl+ + +++++  l d     +v+v+d+eal a +++ ++egi++
  EGE24980.1 258 EVVMYGVEANglgiDTPNHAAPLQAGRVGVLHGNrtylmadddgqilgtHSISAGLDYPGVGPEHSFLKDIERVHYVGVTDDEALHAFKEVTSKEGIIP 356
                 79********9944455555555888888888889999999******************66666666666666677*********************** PP

                 -HHHHHHHHHHHHHHHHCCTTCEEEEEEE-B CS
        PALP 264 epssaaalaalklreagelkegdrvvviltg 294
                    s +a+a   l+ a+ +k+++++++ ++g
  EGE24980.1 357 ALESSHAVAYG-LKLAATMKPEQSMIINMSG 386
                 **888888888.8********9999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3217.91
//
Query:       EGE24981.1  [L=211]
Description: N-(5'-phosphoribosyl)-anthranilate isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-45  153.9   0.0    4.7e-45  153.8   0.0    1.0  1  PRAI      N-(5'phosphoribosyl)anthranilate (PRA) isomerase
  ------ inclusion threshold ------
       0.44    9.5   2.5        8.5    5.3   0.3    2.1  2  FMN_dh    FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.8   0.0   5.3e-49   4.7e-45       1     193 [.       4     208 ..       4     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 153.8 bits;  conditional E-value: 5.3e-49
                 TCE----SHHHHHHHHHHTSSEEEEE--TTBTTB--HHHHHHHCCCS--E..EEEEESSS-HHHHHHHHHHCTECEEEE-CGG..-HHHHHHHHHHS-T CS
        PRAI   1 akicgltrasdvkaavkagadelglifaesskrevseeqaqellekvpak..lVGVfvNqpieevlriaqelgldvvQLHGde.deqeyeellktelpv 96 
                 +k cgltr++dv aav+agad++gl+f + s+r+v+  qa++l+ ++pa   +V++ vN + +   +iaq ++ d++Q HGde  ++++++++  + ++
  EGE24981.1   4 VKFCGLTRPQDVSAAVCAGADAIGLVFYPPSPRAVDVLQAKQLVANIPAFvsVVALVVNIDDDMLIKIAQAVSFDIIQFHGDEtADECQRQAALVNKRW 102
                 589*********************************************6556*******************************8788888899999*** PP

                 TSEEEEEEE-S.....SS--S-SSTT-...SEEEEE....SSS-SSSXXXXGGGGTTSXX.TTEEEESSXXTTTHHHHHT.TXXSEEEEXGGGEEE.TE CS
        PRAI  97 ikalkvaesvd.....evkearradhv...dllllD....sgaGGtGelldwsliskllkslkviLAGGLtpeNvaeaiklegvlgvDvssGVEtn.Gv 182
                 ika++v++ +       +k++ ++ h+     +llD     + GGtGe++dws i+k++ sl++iLAGGLtp+Nva + +   +++vDvs+G+E + G+
  EGE24981.1 103 IKAVRVDA-LRydakgIQKIIDDY-HAkgaASILLDayhaDKFGGTGERFDWSIIPKQS-SLPIILAGGLTPNNVALTRQ-LPIYAVDVSGGIELAkGI 197
                 *****987.322244444444444.43366899*****99999****************.5*******************.99**************** PP

                 EXHHHHHHHHH CS
        PRAI 183 kDlekirkfvq 193
                 kD +k+++f++
  EGE24981.1 198 KDFDKMKAFIE 208
                 *********98 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.3   0.00094       8.5     279     299 ..       8      28 ..       6      29 .. 0.88
   2 ?    4.6   0.1    0.0016        14     137     247 ..      56     189 ..      37     211 .] 0.59

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.00094
                 S--SHHHHHHHHHTT-SEEEE CS
      FMN_dh 279 GirrGsDvlkAlalGAdavll 299
                 G +r +Dv  A++ GAda++l
  EGE24981.1   8 GLTRPQDVSAAVCAGADAIGL 28 
                 8899999*********99875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0016
                 ESEEEEESSTSS---BHHHHHC...T--BSTT-T.G.TTGGGSTSGSCCTTH..........................THHHH..HHCCCHB-TC--HH CS
      FMN_dh 137 ykalvltvDtpvlgkRerdlrn...gfslppklklrnllqelakpewaaeal........................kkasaaa..efvgkqldpsltwd 206
                 + alv+++D  +l k ++++     +f+  ++ +  +  ++l++++w +++                         +        ++ ++ +  + +  
  EGE24981.1  56 VVALVVNIDDDMLIKIAQAVSFdiiQFHGDETADECQRQAALVNKRWIKAVRvdalrydakgiqkiiddyhakgaaS----ILldAYHADKFGGTGERF 150
                 55666666666666666665552122222222333334444444555555446666666666666666654422210....113333333333333333 PP

                 HHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GG CS
      FMN_dh 207 dikwlreqtklplvvKGvltaedakraveaGvdgivvSNHG 247
                 d + + +q +lp+++ G lt++++ +  ++ + ++ vS  G
  EGE24981.1 151 DWSIIPKQSSLPIILAGGLTPNNVALTRQLPIYAVDVS--G 189
                 4456788999***************************9..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1699.38
//
Query:       EGE24982.1  [L=33]
Description: hypothetical protein EA1_06881 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 282.92
//
Query:       EGE24983.1  [L=572]
Description: prolyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-48  164.0   0.0      5e-48  163.4   0.0    1.2  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
      4e-20   72.1   0.1    1.1e-19   70.7   0.1    1.8  2  tRNA_edit       Aminoacyl-tRNA editing domain
    8.4e-20   70.7   0.0    1.8e-19   69.7   0.0    1.6  1  HGTP_anticodon  Anticodon binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.0   8.4e-52     5e-48       2     179 .]      95     460 ..      94     460 .. 0.96

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 8.4e-52
                   EEEETTSEEEEE-SSSHHHHHHHHHHHEEEB.GGSSEEEEEEEEEEBTTTSTBC.TTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHTT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   2 kledrndreyiLkPtneetfvelirdevlrs.krLPlklyqiqtkyRdEksdsr.GLlRvreFhqkdgyvfha.easlddslrdlikaisriferlg 95 
                   +++dr  r+++L+Pt+ee ++ + r+e l+s k+LP+ +yqiqtk+RdE +  r G++R reF++kd+y+fh  ++sl + ++d+  a++rif rlg
    EGE24983.1  95 RFKDRHSRDFVLGPTHEEVITDIARNE-LKSyKQLPITFYQIQTKFRDEIR-PRfGVMRAREFTMKDAYSFHIdKESLANTYQDMYDAYNRIFTRLG 189
                   799************************.***778*****************.888******************99********************** PP

                   .SCEEEEEEGTTSCBTTSEEEEEEEEETT.................................................................... CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................... RF
  tRNA-synt_2b  96 lefraiielmsaksadykdkkefeavses.................................................................... 124
                   l+fra+  +++  s+ +  + ef ++  s                                                                    
    EGE24983.1 190 LNFRAVQADTG--SIGGFASHEFHVLADSgeddiafssdsdfaanielaeavcydkraaptqartdvdtpnmttceavaehlniplsqtvktlivkg 284
                   *********99..57899999999999999999999999999999999999999999999999999999999999999999**************** PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  tRNA-synt_2b 125 ................................................................................................. 124
                                                                                                                    
    EGE24983.1 285 rhsqdnpeapkfialvlrgdhtlneikaekiadahtpltmatedelkeiglikgyistdlqlpvyvdraaaalsdfvsganiehkhttgmnwdrdat 381
                   ************************************************************************************************* PP

                   ........................TSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHHHHHHHH CS
                   ........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 125 ........................ltkgieigtiqklgtrlserlgatvldennreksvimicaaigveRllsaileqn 179
                                           +++gie+g+i++lg+++s++l+ +vl ++++  + +m+c++igv+R+++a++eqn
    EGE24983.1 382 itqivdirnvvdgdpspdgkgvisIKRGIEVGHIFQLGDKYSKALNCSVLGKEGKPVTLMMGCYGIGVSRIIAAAIEQN 460
                   ***********************9*****************************************************98 PP

>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         1   6.1e+03      72      93 ..     196     215 ..     193     216 .. 0.80
   2 !   70.7   0.1   1.9e-23   1.1e-19       1     119 [.     256     377 ..     256     380 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1
   tRNA_edit  72 gvepGgvgPlglkaagvpvllD 93 
                 +   G++g ++   + ++vl+D
  EGE24983.1 196 QADTGSIGGFAS--HEFHVLAD 215
                 56789*****96..59999998 PP

  == domain 2  score: 70.7 bits;  conditional E-value: 1.9e-23
   tRNA_edit   1 tpgtktieelaaalgvdpsaiaKtlvlkd.......kkgelvlvllpgdreldlkklakllga.kklrlaseeelrellgvepGgvgPlglkaagvpvl 91 
                 tp+++t+e++a++l+++ s+++Ktl++k         + ++++++l+gd+ l++ k++k  +a   l++a+e+el+e+ g+ +G+++   l   ++pv+
  EGE24983.1 256 TPNMTTCEAVAEHLNIPLSQTVKTLIVKGrhsqdnpEAPKFIALVLRGDHTLNEIKAEKIADAhTPLTMATEDELKEI-GLIKGYISTD-L---QLPVY 349
                 799**************************88776666666**********************999************9.*******964.4...49*** PP

   tRNA_edit  92 lDeslkeyptvvvgagengatlelsped 119
                 +D +++  +++v ga+ ++++++  ++d
  EGE24983.1 350 VDRAAAALSDFVSGANIEHKHTTGMNWD 377
                 ************************9997 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0     3e-23   1.8e-19       2      89 ..     483     570 ..     482     572 .] 0.98

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 3e-23
                     EEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHH CS
  HGTP_anticodon   2 vvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelve 89 
                     v+++p+++k+ ++e  a++l++ L+a gi+v ldd++e+ g k+++ +l+gip ++vv ++ l +++ +  +r+t++q+++sldel++
      EGE24983.1 483 VAIVPMKSKDGDAEAKAQSLYQTLKARGINVLLDDRDERAGVKFADLELIGIPHRIVVSQRNLAENKYEYTNRATGDQQMLSLDELLA 570
                     89*******999*************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4452.57
//
Query:       EGE24984.1  [L=280]
Description: 7-cyano-7-deazaguanine reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-39  134.4   0.0      3e-39  133.8   0.0    1.3  1  QueF_N    Nitrile reductase, 7-cyano-7-deazaguanine-reductase
    5.8e-24   84.0   0.0    3.9e-19   68.6   0.0    2.3  2  QueF      QueF-like protein


Domain annotation for each model (and alignments):
>> QueF_N  Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   3.3e-43     3e-39       1     110 []      13     126 ..      13     126 .. 0.94

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 3.3e-43
                 ------GGG--EEETHHHHHHT....T--SS-S-EEEEEEEEEEEEEE-TTS-EEEEEEEEEEETTSSEEE-HHHHHHHHHTTTT-B-S-HHHHHHHHH CS
      QueF_N   1 YkeeYdpslLfpipRalkrdel....gleeelpfvGaDiWtayElswLnakgkpqvaiaelevpaesenliEsksfklYlnsfnqtrfesaeeveetle 95 
                 Y+++Yd+s+Lf+i+R+l rde+    g+++++   G+D+W+a+ElswLn +g+ +vaia++++pa+s+n++Esks+klYlns+n t+f +++ev+++++
  EGE24984.1  13 YPKNYDASILFAISRSLGRDEVlkqtGIQADQLTDGVDVWQAFELSWLNLQGICKVAIARIRIPANSPNIVESKSLKLYLNSLNFTKFGDMAEVQALIQ 111
                 99*****************9863333667788899**************************************************************** PP

                 HHHHHHHTS--EEEE CS
      QueF_N  96 kDlsaaagaevkvel 110
                 kDlsa++g +v+ve+
  EGE24984.1 112 KDLSACVGIKVSVEI 126
                 ************986 PP

>> QueF  QueF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   7.5e-06     0.068      14      30 ..      80      96 ..      70     125 .. 0.70
   2 !   68.6   0.0   4.4e-23   3.9e-19       1      74 [.     193     265 ..     193     270 .. 0.96

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.5e-06
        QueF 14 kkvvelkslklYlisfr 30
                +++ve+kslklYl+s  
  EGE24984.1 80 PNIVESKSLKLYLNSLN 96
                569***********943 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 4.4e-23
        QueF   1 PDfatlvirYvpdkkvvelkslklYlisfrnrgifhEevvnrilddlvealkPkwlevvgdfnpRGgididvvv 74 
                 PD++tl ++ + +k  ++ + +++Y+ +fr+++ fhE++v+ri+ d++   +P  l v++++++RGgidi++v+
  EGE24984.1 193 PDWGTLSVSITTNK-ALDYQKILRYVLTFRQHNGFHEQCVERIFADFLVNFEPSALMVQANYTRRGGIDINPVR 265
                 9********98888.99******************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2284.18
//
Query:       EGE24985.1  [L=257]
Description: ABC transporter permease protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-37  129.1  27.3    1.5e-37  129.1  27.3    1.8  2  ABC2_membrane    ABC-2 type transporter
    5.8e-09   35.5  34.7    7.6e-09   35.1  34.2    1.2  1  ABC2_membrane_3  ABC-2 family transporter protein
  ------ inclusion threshold ------
       0.03   13.6  22.3       0.39   10.0  22.3    2.2  1  ABC2_membrane_2  ABC-2 family transporter protein
      0.039   13.5  11.0      0.025   14.1   9.0    1.7  1  CcmB             CcmB protein


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1  27.3   3.4e-41   1.5e-37       3     209 ..      10     219 ..       8     220 .. 0.93
   2 ?   -0.3   0.6      0.13   5.8e+02     103     122 ..     225     244 ..     219     252 .. 0.61

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 3.4e-41
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplllalvfgtvfgn.lg..nsedglnr.....pgllffsvlflafsaltsvapvferergvlerelvspl 90 
                    ++++lk+e+++++r + ++ll ++i++ l+++vfg ++g+ +g     +   +     pgl++++v+++++s++ s+ +++++ +g++e++lvspl
     EGE24985.1  10 FFTILKKEIKRILRIWLQTLLPPVITMTLYFVVFGQMIGSrIGemGGVS---YmqfivPGLIMMAVITNSYSNVLSS-FFSMKFQGSIEELLVSPL 101
                    899************************************7533332333...345589************9999999.****************** PP

  ABC2_membrane  91 yslsayvlakvlvelpvsllqalifllivyflvgldlsrfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmp 186
                     s ++++l++v + + +++++al++++++ f++ l++ + + +l+++l t++++s  gl+++++a+sfed+s++ s+vl+pl++l+G+f+++d++ 
     EGE24985.1 102 -SKHTILLGYVGGGVFRGIVIALLVTIVAQFFTQLTVVNLGVMLMTILGTSVLFSIGGLINAIFARSFEDISIIPSFVLTPLTYLGGVFYSLDNLS 196
                    .************************************766*******************************************************8 PP

  ABC2_membrane 187 kwlqwiaylnPltyavealrsnl 209
                    +++q ++ lnP++y+v+a+r ++
     EGE24985.1 197 SFWQNLSLLNPIVYMVNAFRFGI 219
                    8*******************765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.13
  ABC2_membrane 103 velpvsllqalifllivyfl 122
                    v++ +sl+++l+f ++ y +
     EGE24985.1 225 VNVWWSLIAILVFCILLYGW 244
                    45556666666666666654 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1  34.2   1.7e-12   7.6e-09     156     339 ..      56     241 ..      26     246 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.7e-12
  ABC2_membrane_3 156 lsnvasflvg.liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll..afglgipfgnlglllllfl 246
                        ++ +f+v+ li++ +i+ ++s++++s+ + k ++ +e +lvs++s+ +++l+ + g ++ +++++ll++++  +f  ++++ nlg++ l+ +
       EGE24985.1  56 GVSYMQFIVPgLIMMAVITNSYSNVLSSFFSMKFQGSIEELLVSPLSKHTILLGYVGGGVFRGIVIALLVTIVaqFFT-QLTVVNLGVM-LMTI 147
                      568889999999*******************************************************99988645333.5999999955.6666 PP

  ABC2_membrane_3 247 lfglayialgyllsslfknsetaqilifivilllsgffgglfp.ledlpsalkwifsiiPffapglgllrlitgdplweillsliilalfavvy 339
                      l+  ++ ++g l+ ++f +s + +++i+ + l+++ ++gg+f  l++l+s++++++ ++P+++  +++   i g + +++++sli+ ++f++++
       EGE24985.1 148 LGTSVLFSIGGLINAIFARSFEDISIIPSFVLTPLTYLGGVFYsLDNLSSFWQNLSLLNPIVYMVNAFRFGILGHSDVNVWWSLIAILVFCILL 241
                      66667777999999999999776666666666677777777555************************9999999889***9988888888875 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  22.3   8.6e-05      0.39       4     281 ..      14     247 ..      11     252 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.6e-05
  ABC2_membrane_2   4 akkEfrdlvrsrrfllltvllplidvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkvvstimavlipviaalfgadai 97 
                      +kkE+++++r   ++l t+l p+i  +  y+  +g++ +s  ++ +  + +    +++ +             +  +mav+   +  +++  ++
       EGE24985.1  14 LKKEIKRILR---IWLQTLLPPVI-TMTLYFVVFGQMIGSRIGEMGGVSYM----QFIVP-------------GLIMMAVITNSYSNVLS--SF 84 
                      5555555543...66666666666.66666666666666666665544333....33222.............11133333333333333..46 PP

  ABC2_membrane_2  98 agEkergTlkllLskPvsRdeillgKfigglaiglaiavallatvllalaiilalgivlaledllllvvasvlllllvvflalglllSsvarss 191
                      +  k +g+++ lL +P s+ +illg + gg+  g++  +all+t ++     +++ ++l++ +l ++++ ++ + +   ++++g l+ +++  s
       EGE24985.1  85 FSMKFQGSIEELLVSPLSKHTILLGYVGGGVFRGIV--IALLVT-IV-----AQFFTQLTVVNLGVMLMTILGTSV---LFSIGGLINAIFARS 167
                      666779*******************88888887444..444444.33.....555555555555555555443333...489999998888768 PP

  ABC2_membrane_2 192 reaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilllllavllvlgyv 281
                       e + +  ++++  +   ++v y + +l +  ++       lsll+p++++  +++  + g +       + +l+++l+ ++ l++ +y 
       EGE24985.1 168 FEDISIIPSFVLTPLTYLGGVFYSLDNLSSFWQN-------LSLLNPIVYMVNAFRFGILGHS---DVNVWWSLIAILVFCILLYGWAYR 247
                      8888877777777777788888777666665555.......*********9999998777774...245666666666666666666664 PP

>> CcmB  CcmB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   9.0   5.6e-06     0.025       4     148 ..      13     163 ..      10     184 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.6e-06
        CcmB   4 lllrdlrlalRak.gelllgllFfllvvtllplavGP......dtallsriapgilWvaallaslLsldrlfaadfedGsLellllapvplellvlaKa 95 
                 +l+++++  lR   + ll +++ + l  ++++  +G           ++ i pg++ +a++  s   +   f + + +Gs+e ll++p++ ++++l+ +
  EGE24985.1  13 ILKKEIKRILRIWlQTLLPPVITMTLYFVVFGQMIGSrigemgGVSYMQFIVPGLIMMAVITNSYSNVLSSFFSMKFQGSIEELLVSPLSKHTILLGYV 111
                 56666655555431333334444444444444444431111113467999**********999988877777777788************998888876 PP

        CcmB  96 lAhwlltglplvllaplla.lllnleaaalgllaltLllGtpalsllgavgaAl 148
                     ++ g+   ll +++a  + +l +  lg++++t+ lGt +l  +g +  A+
  EGE24985.1 112 G-GGVFRGIVIALLVTIVAqFFTQLTVVNLGVMLMTI-LGTSVLFSIGGLINAI 163
                 5.5667777776666666615668999****999996.7999998888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1889.12
//
Query:       EGE24986.1  [L=322]
Description: ABC transporter ATPase subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-31  109.8   0.0    2.9e-31  108.8   0.0    1.5  1  ABC_tran  ABC transporter
    7.9e-14   52.2   1.6    3.9e-08   33.4   0.0    2.3  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    3.3e-06   27.7   0.4    1.6e-05   25.5   0.2    2.3  2  DUF4162   Domain of unknown function (DUF4162)
    3.4e-06   27.0   0.0       0.02   14.6   0.0    2.2  2  AAA_15    AAA ATPase domain
    0.00022   20.7   0.4       0.31   10.4   0.1    2.4  2  SMC_N     RecF/RecN/SMC N terminal domain
    0.00072   19.5   0.0     0.0014   18.6   0.0    1.5  1  Rad17     Rad17 P-loop domain
      0.002   17.8   0.2     0.0043   16.7   0.2    1.5  1  AAA_29    P-loop containing region of AAA domain
     0.0041   17.4   0.9      0.056   13.7   0.2    2.7  2  AAA_22    AAA domain
     0.0063   15.5   0.0     0.0084   15.1   0.0    1.2  1  AAA_10    AAA-like domain
  ------ inclusion threshold ------
       0.01   15.6   0.9        2.7    7.7   0.1    2.6  3  MukB      MukB N-terminal
      0.018   14.8   0.0       0.17   11.6   0.0    2.2  1  AAA_30    AAA domain
       0.03   14.8   4.0      0.035   14.6   0.4    2.4  2  AAA_23    AAA domain
      0.037   13.6   0.0      0.083   12.5   0.0    1.5  1  AAA_27    AAA domain
      0.079   13.0   0.3        1.3    9.0   0.1    2.3  2  MutS_V    MutS domain V
       0.19   11.5   0.0       0.44   10.3   0.0    1.6  1  HopA1     HopA1 effector protein family


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   2.5e-34   2.9e-31       1     137 []      31     175 ..      31     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 2.5e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 lk ++l++ +g+  a++G+nGaGKSt +++++ l  p +G++++ g dl + +  ++++ +g++pqe ++ +  tv++              +++ ++e
  EGE24986.1  31 LKGIDLTVPQGSFFALLGPNGAGKSTTISIISSLFPPSAGTVEIFGIDLVK-NPAKAKQFLGIVPQEFNFMQFETVQDIlinqagyfgitakDAKLRAE 128
                 789***********************************************9.7888999********999999999999999******996666666** PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++l+ lgl ++kdt++    + LSgG+k+r+++aral+ +pkll+lDEpta
  EGE24986.1 129 ELLKALGLWDKKDTTA----RMLSGGMKRRLMIARALMHRPKLLILDEPTA 175
                 ***************9....*****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.7   1.9e-06    0.0022       1      23 [.      43      65 ..      43     103 .. 0.83
   2 !   33.4   0.0   3.3e-11   3.9e-08     228     298 ..     138     206 ..      77     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.9e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                + +l GpNg+GKS+ + +++ l+
  EGE24986.1 43 FFALLGPNGAGKSTTISIISSLF 65
                679******************97 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 3.3e-11
      AAA_21 228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell...kelsrngaQviltTHS 298
                 d ++++ar lS G+kr   +++  l  ++  +ll++DEp +g + +l r+ +e++   +++++  + +iltTH 
  EGE24986.1 138 DKKDTTARMLSGGMKRR-LMIARALMHRP--KLLILDEPTAGVDIELRRSMWEFIeciNQEEK--TTIILTTHY 206
                 458999***********.88888887776..8***********************95555555..********6 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       3.3     4e+03      17      57 ..      92     134 ..      77     137 .. 0.62
   2 !   25.5   0.2   1.3e-08   1.6e-05      28      81 .]     258     313 ..     220     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.3
                 EE-------..---EEEE-TT.S-EEEEE--.----------- CS
     DUF4162  17 veadaeelleepgveeveeeg.gelelkled.eeaanellkal 57 
                 +  ++ ++ + + v+++  ++ g++ ++ +d +  a+ellkal
  EGE24986.1  92 IVPQEFNFMQFETVQDILINQaGYFGITAKDaKLRAEELLKAL 134
                 4445555555666666633333778888888788888888877 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 1.3e-08
                 ---EEEE-TT.S-EEEEE-------------.----EEEEEEEE---HHHHHHHHH CS
     DUF4162  28 pgveeveeeg.gelelkledeeaanellkal.tsgveirsFeeeePsLndIFiekv 81 
                 ++v + ++ + ++le++l+++e+ n+++++l ++gv+i s++ +   L++ F+ +v
  EGE24986.1 258 EQVLHYQKIDaQSLEVTLKKGESLNDVFAQLsNQGVQIASMRNKSNRLEELFMNLV 313
                 4455556666688******************88********************987 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.2   0.00031      0.37      25      50 ..      43      68 ..      26     103 .. 0.76
   2 !   14.6   0.0   1.7e-05      0.02     286     364 ..     109     205 ..      77     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00031
      AAA_15 25 ltvliGkNnsGKSsilealdlFlnnk 50
                +  l G+N++GKS+ + ++  ++  +
  EGE24986.1 43 FFALLGPNGAGKSTTISIISSLFPPS 68
                77899**************9999766 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.7e-05
      AAA_15 286 ik...........................ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnkt 357
                 +                            d+ ++++ + + G++r l ++   + +++        ++l+++EP a   +++ +++++ +  + +++kt
  EGE24986.1 109 LInqagyfgitakdaklraeellkalglwDKKDTTARMLSGGMKRRLMIAR--ALMHRP-------KLLILDEPTAGVDIELRRSMWEFIECINQEEKT 198
                 22233333333335556677788999999*****************99875..555555.......67**********************999999999 PP

      AAA_15 358 QviitTH 364
                  +i+tTH
  EGE24986.1 199 TIILTTH 205
                 ******* PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00026      0.31      18      44 ..      36      61 ..      20      70 .. 0.72
   2 !    8.3   0.0    0.0012       1.4     129     207 ..     139     215 ..      80     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
                EEEETTSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 18 vilpfsksftaivGpNGSGKsnlldAi 44
                 ++p + sf a++GpNG+GKs  +  i
  EGE24986.1 36 LTVP-QGSFFALLGPNGAGKSTTISII 61
                4444.44699***********877655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0012
                 CTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 129 sagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemlekadk 207
                 +++ +  +LSgG k  +++    A   +++  l +lDe  a  D + ++ + e+++  ++++++ +i +++  e  e+  k
  EGE24986.1 139 KKDTTARMLSGGMKRRLMI----ARALMHRPKLLILDEPTAGVDIELRRSMWEFIEciNQEEKTTIILTTHYLEEAEQLCK 215
                 344455599***9985555....54455666799*********************97667777888888776555555444 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.2e-06    0.0014      48     132 ..      44     128 ..      29     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.2e-06
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklre.wlnpvslkepdnqksdfkgltekesrflsqiesfkeleLkdakylklqklGddlrtd 132
                   + GP G gkst++ ++s  + ++     + ++ l + + + ++f+g++ +e +f+ q e+ +++++++a y  +  +  +lr++
  EGE24986.1  44 FALLGPNGAGKSTTISIISSLFPPSAGTvEIFGIDLVKNPAKAKQFLGIVPQEFNFM-QFETVQDILINQAGYFGITAKDAKLRAE 128
                 5678******************9998542799****9*************9999887.89*************9888776666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   3.6e-06    0.0043      20      49 ..      39      68 ..      26      73 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.6e-06
      AAA_29 20 dlkg.atlltGpsGsGKSTllDAiqalLvpa 49
                  +g ++ l Gp+G+GKST +  i+ l+ p+
  EGE24986.1 39 P-QGsFFALLGPNGAGKSTTISIISSLFPPS 68
                3.556999************96666666554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   4.7e-05     0.056       5     128 ..      41     203 ..      39     213 .. 0.67
   2 ?   -0.3   0.0         1   1.2e+03      39      84 ..     267     315 ..     255     321 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.7e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee..........................erpevv...fvtlpsst.....sskdllrellralglelk 69 
                  ++ ++ G+ G+GK+t++  + + ++  a   e                          ++ e+v   +++ ++       + k  ++ell+algl  k
  EGE24986.1  41 GSFFALLGPNGAGKSTTISIISSLFPPSAGTVEifgidlvknpakakqflgivpqefnfMQFETVqdiLINQAGYFgitakDAKLRAEELLKALGLWDK 139
                 578899*******************866555559999***99987777777777777774444444443333333344342244446777777776666 PP

      AAA_22  70 aerlsseell.ealeqalrarav....ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                 +  +++ ++l   + + l  +++    ++lli+DE    ++   +  ++e++ ++ n ++ ++++iL 
  EGE24986.1 140 K--DTTARMLsGGMKRRLMIARAlmhrPKLLILDEPTAgVDielRRSMWEFI-ECIN-QEEKTTIILT 203
                 6..66666666666666665555699999******88877675557777777.5555.4666666665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1
      AAA_22  39 rpevvfvtlpsstsskdllrellralglelka..erlsseell.ealeq 84 
                 +++ ++vtl++++s+ d++ +l ++  + ++   + +++eel+ +++e+
  EGE24986.1 267 DAQSLEVTLKKGESLNDVFAQLSNQGVQIASMrnKSNRLEELFmNLVEE 315
                 5566778888888888887777655443333345566666666566655 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.1e-06    0.0084      12     136 ..      32     156 ..      22     239 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.1e-06
      AAA_10  12 qevkgsktnasasliiGdlGnGKSvlakllvlyi..sllggkaliiDpkkerekfketlpeiakkinvvtLdseeenegvLdPlvllk.eekeaeslae 107
                 ++++ ++ + s  +++G+ G+GKS ++ ++      s+    ++ iD  k+  k+k++l  +++++n+++ +  + +  +++    +    k+a+  ae
  EGE24986.1  32 KGIDLTVPQGSFFALLGPNGAGKSTTISIISSLFppSAGTVEIFGIDLVKNPAKAKQFLGIVPQEFNFMQFE--TVQDILINQAGYFGiTAKDAKLRAE 128
                 666666666677799*************99866522444588999*************************99..5555688888877757778888888 PP

      AAA_10 108 dilelllgvkkkesekkaalseaveavle 136
                 ++l+  lg+++k++    +ls  ++++l 
  EGE24986.1 129 ELLKA-LGLWDKKDTTARMLSGGMKRRLM 156
                 88875.67888888887788887777664 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0023       2.7      30      52 ..      45      66 ..      23      71 .. 0.84
   2 ?   -2.6   0.0       3.3   3.9e+03     162     185 ..      97     121 ..      93     129 .. 0.66
   3 ?    5.7   0.0    0.0095        11     159     201 ..     270     314 ..     256     321 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0023
                HHHS--SHHHHHHHHHHHHHHS- CS
        MukB 30 tlsGgnGaGksttmaafvtaliP 52
                +l G nGaGkstt+ +++++l P
  EGE24986.1 45 ALLGPNGAGKSTTI-SIISSLFP 66
                789*********96.56777776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
                 -EEEE-S-HHHHH.HHHHHTTSBSS CS
        MukB 162 vrlkkfnsvtdyh.allfdlGvipk 185
                  ++ +f++v+d   ++   +G+++k
  EGE24986.1  97 FNFMQFETVQDILiNQAGYFGITAK 121
                 6788999999964255666777776 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0095
                 STT-EEEE-S-HHHHHHHHHHTTSBSS---SHHHHHH..HHHHHH CS
        MukB 159 legvrlkkfnsvtdyhallfdlGvipkrlrssedrsk..fyrlie 201
                   +v lkk +s++d +a+l + Gv    +r++++r    f +l+e
  EGE24986.1 270 SLEVTLKKGESLNDVFAQLSNQGVQIASMRNKSNRLEelFMNLVE 314
                 346799*************************99985322555655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014      0.17      20      96 ..      43     172 ..      34     204 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglA.....ptgkaAkvLa.............................eelgieastiakllkrlk... 81 
                 + +l Gp G+GK+t+++ +  ++  + g+v ++        +ka + L+                             +++ ++a+ + k l  ++   
  EGE24986.1  43 FFALLGPNGAGKSTTISIISSLFPPSAGTVEIFGidlvkNPAKAKQFLGivpqefnfmqfetvqdilinqagyfgitaKDAKLRAEELLKALGLWDkkd 141
                 67899**************99999885444433200000233333335455544444444444444444443333333333334444444444444666 PP

      AAA_30  82 ................grarlepgtllivDE 96 
                                 +ra +++ +lli DE
  EGE24986.1 142 ttarmlsggmkrrlmiARALMHRPKLLILDE 172
                 6666666666777777556666667777777 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.4   2.9e-05     0.035      15      39 ..      34      61 ..      15      66 .. 0.78
   2 ?    1.4   0.3      0.33     4e+02     155     177 ..     185     212 ..      76     315 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.9e-05
      AAA_23 15 idF...skgltlItGpNGaGKTTildAi 39
                id+      ++++ GpNGaGK+T +  i
  EGE24986.1 34 IDLtvpQGSFFALLGPNGAGKSTTISII 61
                55555556799************98766 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.33
      AAA_23 155 leelekeleeledekkllekl.....eq 177
                 + e++++++++e++   l ++     eq
  EGE24986.1 185 MWEFIECINQEEKTTIILTTHyleeaEQ 212
                 4444444444444444333332222122 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.9e-05     0.083      19      50 ..      34      65 ..      25      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.9e-05
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrAisdll 50
                +d+   + ++  ++GpN AGKst+++ is+l+
  EGE24986.1 34 IDLTVPQGSFFALLGPNGAGKSTTISIISSLF 65
                5666678889999************9999885 PP

>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.18   2.2e+02       3      15 ..      46      58 ..      44      64 .. 0.83
   2 ?    9.0   0.1    0.0011       1.3      76     143 ..     163     230 ..      99     246 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.18
                EE-STTSSHHHHH CS
      MutS_V  3 itGpnmaGkstyl 15
                + Gpn aGkst +
  EGE24986.1 46 LLGPNGAGKSTTI 58
                56*********77 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
                 -TTSEEEEESTS-SS-HHHHHHHHHHHHHHHHHTT--EEEEEES-GGGGG.HHHHSTTEEEEEEEEEEE CS
      MutS_V  76 tekslvilDElGRGtstydGlaialavaeyllekikaktlfatHyheltk.laekleevknlhlavkee 143
                  +  l+ilDE   G  ++   ++ +  +e + ++ k++ +++tHy e ++ l + ++ + + +++++++
  EGE24986.1 163 HRPKLLILDEPTAGVDIELRRSM-WEFIECINQEEKTTIILTTHYLEEAEqLCKYIAILDKGEIRINTD 230
                 34569999999999888776665.8999*****************986541344444445555555555 PP

>> HopA1  HopA1 effector protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00037      0.44     118     156 ..     137     172 ..     118     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00037
                 EE-T...T--S-HHHHHHHHHHHHHH-.-SS-HHHHHHH CS
       HopA1 118 eepedkggdsesfGqhRaqiiAkALveadaeerlkaire 156
                 ++++d++ +++s G++R  +iA+AL+    +++l +++e
  EGE24986.1 137 WDKKDTTARMLSGGMKRRLMIARALMH---RPKLLILDE 172
                 78888********************99...454444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2326.39
//
Query:       EGE24987.1  [L=184]
Description: cytochrome c class I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-19   68.3   0.2    3.2e-18   65.8   0.1    2.0  2  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
      0.043   14.9   1.7       0.38   11.9   0.3    2.7  2  Cytochrom_C      Cytochrome c
      0.061   12.9   0.0      0.074   12.6   0.0    1.1  1  Chorismate_bind  chorismate binding enzyme
        1.1    8.9   4.6        1.4    8.5   4.6    1.2  1  tRNA_anti-like   tRNA_anti-like
        2.7    8.1   6.1        3.7    7.7   6.1    1.2  1  DUF2057          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.24   8.7e+02      34      58 ..      63      89 ..      31      94 .. 0.72
   2 !   65.8   0.1     9e-22   3.2e-18       2      67 .]     106     179 ..     105     179 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.24
  Cytochrome_CBB3 34 p..dalvdiiknGkgaMpafggqlsde 58
                     p  ++lv++  n + + +++g+ + d 
       EGE24987.1 63 PqvQKLVAMYPNLIARIAPYGKVCFDG 89
                     246778888888899999999977665 PP

  == domain 2  score: 65.8 bits;  conditional E-value: 9e-22
  Cytochrome_CBB3   2 aaaaGaalykknCasCHgkggagpslagr.dwep......dalvdiiknGkgaMpafgg.qlsdeelwalvaYl 67 
                      +a++G++lyk+ C++CH++g  g+++ g+ dw+       ++l++++ nG++aMpa+gg ++sdee++++v+Y+
       EGE24987.1 106 QARDGESLYKAICSTCHDAGLIGAPKIGTsDWASrigkgtATLYNHAINGFNAMPARGGaDISDEEVQNAVDYI 179
                      689***************9****77777779995566777*********************************8 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.2   4.2e+03      44      44 ..      42      42 ..      11      74 .. 0.51
   2 ?   11.9   0.3    0.0001      0.38       2      28 ..     108     145 ..     107     183 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.2
                 H CS
  Cytochrom_C 44 g 44
                 +
   EGE24987.1 42 V 42
                 1 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.0001
                  --HHHHHHTTGGGTB-SSSBSSS............... CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgg...........g 28 
                   +G+ l++a C +CH ++  ga++ g            
   EGE24987.1 108 RDGESLYKAICSTCHDAGLIGAPKIGtsdwasrigkgT 145
                  5799***********99999997655444443333331 PP

>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.1e-05     0.074      95     197 ..      42     141 ..       8     158 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                      SSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHH CS
  Chorismate_bind  95 gktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkk 188
                       +t+e+ +++++ + e +Ke    + +v +  n ++++a  g+v  + + +++   +++ l+  +eg+++++ sl +++++++  + + GaPk 
       EGE24987.1  42 VTTAEAPAQAAAPVEEAPKESPQVQKLVAMYPNLIARIAPYGKVCFDGE-ECD--INITVLAPAVEGQARDGESLYKAICSTCHDAGLIGAPKI 132
                      56788999999****************************99*9999544.444..468889******************999999999*****9 PP

                      HHHHHHHHH CS
  Chorismate_bind 189 rameiidel 197
                       + ++  ++
       EGE24987.1 133 GTSDWASRI 141
                      888776665 PP

>> tRNA_anti-like  tRNA_anti-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.6   0.00039       1.4       5      71 ..       4      70 ..       1      74 [. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00039
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---HHHHHTS-..............E..EEHHHHHH CS
  tRNA_anti-like  5 lkkilviilivilllfvialvaqaaesardkekaekedadatlaeakakpeavaekasq..isArdLla 71
                    +kk ++  ++ +l ++ +a   qa+e++ ++e++ ++ ++ t+aea a+++a+ e+a++   ++++L+a
      EGE24987.1  4 MKKAVMFSVAALLAVSTMA--TQAQEAVAPAETQTADATEVTTAEAPAQAAAPVEEAPKesPQVQKLVA 70
                    5666666666655555555..89999999*******999999999999999999988751144555655 PP

>> DUF2057  Uncharacterized protein conserved in bacteria (DUF2057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.1     0.001       3.7     127     179 ..      20      72 ..       6      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.001
     DUF2057 127 qelaeynrsgaaaaaataatataataavaaaaskssataqgqnqaeqmLqywy 179
                   +++++++ a+a+++ta +++++ta+++a+a+++ ++a+++    q L  +y
  EGE24987.1  20 TMATQAQEAVAPAETQTADATEVTTAEAPAQAAAPVEEAPKESPQVQKLVAMY 72 
                 55566777777889999999******************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1450.59
//
Query:       EGE24988.1  [L=178]
Description: lactoylglutathione lyase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-18   66.1   0.0      5e-18   65.5   0.0    1.3  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.5e-06   28.4   0.0    1.3e-05   25.4   0.0    2.1  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
  ------ inclusion threshold ------
      0.013   16.3   0.0      0.026   15.3   0.0    1.5  1  Glyoxalase_6  Glyoxalase-like domain
       0.12   12.4   0.0       0.29   11.2   0.0    1.6  1  Glyoxalase_3  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.1e-21     5e-18       2     128 .]      27     171 ..      26     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.1e-21
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEE....................EESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC.TSEEEEE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdn....................teeteglriaffhaggghielvlneapsgaakhvkkiee.tvhhvaf 79 
                 ++h++l+ +d+ +sl+FYt++LG++l+k + +                      + +     f+   +  +el++n  +++ a + ++  + + +++++
  EGE24988.1  27 FNHTMLRIKDPVRSLEFYTGILGMTLLKHSRFadsgfdlyflarltederanL-PAGDELKDFVSRQRSILELTHNYGTENQADFSYHDGNsEPRGFGH 124
                 69****************************************99987766531.2233333455556666799999999999999966442699***** PP

                 EEEEHCHHHHHHHHHHHTTGEEEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase  80 ialdvedvgkaldrlkeagvkvvaepgrhyfgalysfyfrDpdGillei 128
                 i+++v  + +a+  ++e+gv++ + p+   ++++ +  ++DpdG+++ei
  EGE24988.1 125 ICFSVPSLKEAVAWFDENGVEFKKRPEEGTMKDIAF--IKDPDGYWIEI 171
                 ***********************************6..9*********8 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.9e-09   1.3e-05       3     102 ..      30     154 ..      28     161 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.9e-09
                   EEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTE.....................EEEEEEETTEEEEEEEESSTT...-THHH.......TS-E CS
  Glyoxalase_4   3 igivVeDleaavarfsallGvgpwqryrdepqevdl.....................afallgsgsvqieLieplegp...eflae.......hgeg 68 
                   + +  +D  + +++++++lG++  ++ r+ ++++dl                     +f+  +     +eL ++  ++   +              g
    EGE24988.1  30 TMLRIKDPVRSLEFYTGILGMTLLKHSRFADSGFDLyflarltederanlpagdelkDFVSRQR--SILELTHNYGTEnqaD---FsyhdgnsEPRG 121
                   556678999999**********999999998887773333333333333344443333333333..2455555555444443...14447798999* PP

                   EEEEEEEES-HHHHHHHHCTTTEEEEEEEE-GGG CS
  Glyoxalase_4  69 lhhlaywvddldaavarleeqGfevvqkgvraga 102
                   + h+++ v +l++ava+++e+G+e+  k +++g+
    EGE24988.1 122 FGHICFSVPSLKEAVAWFDENGVEF-KKRPEEGT 154
                   ************************5.44456554 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   5.9e-06     0.026       3     102 ..      31     167 ..      29     172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.9e-06
  Glyoxalase_6   3 vldaadpaalaaFwaaalgweveree....................aaledpegvgpaaedaatllfqrvpe.......................pa 56 
                   +l  +dp +  +F+  +lg+++ +++                    a        ++ a+d+ +  + r +                        + 
    EGE24988.1  31 MLRIKDPVRSLEFYTGILGMTLLKHSrfadsgfdlyflarltederA--------NLPAGDELKDFVSRQRSilelthnygtenqadfsyhdgnsEP 119
                   677899***************99999999999999999644433330........332333333333333335666667778888888886554322 PP

  Glyoxalase_6  57 knr..vHldlavedldaevarlvalGArvlreprdgthgr..vlaDPeGn 102
                     r   H+ ++v++l+++va   + G +  ++p++gt ++   ++DP+G 
    EGE24988.1 120 --RgfGHICFSVPSLKEAVAWFDENGVEFKKRPEEGTMKDiaFIKDPDGY 167
                   ..2459********************************99********95 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.5e-05      0.29       3      56 ..     124     176 ..     122     178 .] 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.5e-05
  Glyoxalase_3   3 HvvlavpdleeaaarfarrlGftvtpggehpglgtaNalvmf..gdg.YlEllavdp 56 
                   H+ + vp+l+ea+a+f ++ G+++ ++   ++ gt   ++ +  +dg  +E++++++
    EGE24988.1 124 HICFSVPSLKEAVAWF-DENGVEFKKR--PEE-GTMKDIAFIkdPDGyWIEIIEINN 176
                   ****************.8999997654..444.888888888544576799998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1322.67
//
Query:       EGE24989.1  [L=208]
Description: putative carbonic anhydrase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-36  126.6   0.1    1.2e-36  126.3   0.1    1.1  1  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   0.1     7e-41   1.2e-36       1     156 []      45     203 ..      45     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 7e-41
                 EEEEEETTTTS-HHHHTTS-TTSEEEEEETTG---TT-HHHHHHHHHHHHTS--SEEEEEEETT-HHHHHHHS...HHCCSTTSSHHHHHHHHHHHHHH CS
      Pro_CA   1 alvigCsDSRvppelitdagpGdlFvvrnvgnlvppadssvlaaleyAvevlkvkhivVlGHskCGavkaalk...aekseeeagaidkwlekireale 96 
                 a+++gCsD+Rvp eli+d+g+GdlFv+r++gn+v     s ++++e+A e+ +++ +vVlGHs+CGav+a+++   + + +  ++++++++++ir+++ 
  EGE24989.1  45 AIILGCSDARVPVELIFDQGLGDLFVIRVAGNVV---APSQIGSIEFAAEKFGTRLVVVLGHSHCGAVTACVEaliNPD-QYYSPNLQSIVDRIRPSVL 139
                 589*******************************...7789****************************9999986544.6779**************9 PP

                 HCHHHHHTTS...SHHHHHHHHHHHHHHHHHHHHHCS.HHHHHHHHTTS-EEEEEEEETTTTEE CS
      Pro_CA  97 kveeelesek...ekearerlleeenVaeqlenLlek.pvvreavekgklkvhGlvydletGev 156
                 + +e + ++    + +++ ++ +++nV  ++++++    +++++v++g+l v+G+ yd++tG+v
  EGE24989.1 140 NLHEIATASGddvDMDELIERSVRANVGMSVSQIKYGsRILEDMVRQGDLLVIGAEYDVATGKV 203
                 9544333322356666666666************98779***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1603.79
//
Query:       EGE24990.1  [L=314]
Description: hypothetical protein EA1_06921 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1133  (0.0631937); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2279.59
//
Query:       EGE24991.1  [L=372]
Description: 3-dehydroquinate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-108  362.4   0.0   1.3e-108  362.2   0.0    1.1  1  DHQ_synthase  3-dehydroquinate synthase
    4.9e-11   42.8   1.5    8.2e-10   38.8   1.5    2.1  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase
    0.00027   19.9   0.6    0.00069   18.5   0.1    1.8  2  Fe-ADH        Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.2   0.0  2.1e-112  1.3e-108       2     261 ..      71     328 ..      70     329 .. 0.99

  Alignments for each domain:
  == domain 1  score: 362.2 bits;  conditional E-value: 2.1e-112
                   EEE-SSGGGCCHHHHHHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEE CS
  DHQ_synthase   2 lvvpdgeksKsletlekildalleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkav 98 
                   +v+pdge +K+ ++++ i+d+ll  ++ R+ +lialGGGv+gD++Gf+Aa ++RGv+f+qvPttllaqvDssvGgKt+in+p gKN+iGaf+qP++v
    EGE24991.1  71 CVLPDGEIYKNQDSINAIYDVLLGVHFARDCTLIALGGGVIGDMTGFAAASFMRGVNFIQVPTTLLAQVDSSVGGKTGINHPCGKNMIGAFWQPSCV 167
                   789********************************************************************************************** PP

                   EEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGGGGTTHHHHHHHHHHHTT CS
  DHQ_synthase  99 lidlevLktLperelraGlaEviKyalikdeelfelleenaeallkeeeeealeeliarsievkaevveeDekekglralLnlGHtigHaiEallgy 195
                   l+d+++++tLpere++aG+aEviKyali+d +++ +lee+a+++ + ++++ l+e+++r++ +ka++v++De+e+g+ralLn+GHt+gH+iE+++gy
    EGE24991.1 168 LADMTTFQTLPEREFAAGMAEVIKYALIMDDDFLIWLEEHADQINA-KDRHLLAEMVYRCCDFKAQIVAADERESGKRALLNFGHTFGHVIETHQGY 263
                   *****************************************99966.69************************************************ PP

                   TTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT.-HHHHHHHHTTCTTX CS
  DHQ_synthase 196 ekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkelleveellealkkDkkv 261
                   +k+lHGeaVa+Gmv+aa++s +lgl+++ +ver+++++kk++lp++ ++  +v ++l+++ +Dkkv
    EGE24991.1 264 GKWLHGEAVAAGMVQAAQMSYRLGLIRACDVERIENIIKKYHLPTKPPKI-DVAQALDLMGHDKKV 328
                   *************************************************9.**************8 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   1.5   1.4e-13   8.2e-10      11     170 ..      30     202 ..      21     273 .. 0.67

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.4e-13
    Fe-ADH_2  11 gellkelelkkvllvadentkkaagekveeslkeagikve..vveeveeeadleeveklveal...reketdlvvavGgGtiiDiakyvs..aklnvpy 102
                 ++++    +k+vl+v++  +  ++  +++e l +ag +ve  v+ + e  ++ ++++++ ++l   + ++   ++a+GgG+i D++ +++  + ++v++
  EGE24991.1  30 SQIIPFITAKQVLIVTNDVVAPLYLAQMQERLLSAGFHVEvcVLPDGEIYKNQDSINAIYDVLlgvHFARDCTLIALGGGVIGDMTGFAAasFMRGVNF 128
                 5556666789***************************9995455555555666666666666644454444489************9875116789*** PP

    Fe-ADH_2 103 vsvpTaa..SvDGfaspgaslvvdgkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytala.....d 170
                 + vpT++   vD+       + +   k  +     P +v+aD++  ++ P+r  a+G+++++ ky  ++      
  EGE24991.1 129 IQVPTTLlaQVDSSVGGKTGINHPCGKNMIGAFWQPSCVLADMTTFQTLPEREFAAGMAEVI-KYALIMdddflI 202
                 *****972245555555566666655666766778*************************99.555555233322 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.2e-07   0.00069       8     189 ..      23     190 ..      16     194 .. 0.77
   2 ?   -1.0   0.0       0.1   6.1e+02     272     336 ..     266     317 ..     241     329 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-07
                 TTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEE..E.EEE-S---HHHHHHHHTTS..-TT.--E.EEEEESHHHHHHHHHHH CS
      Fe-ADH   8 kgaleelgellkklgakralivtdkgslkksglldkvlesleeagievt..vfdgvepnptleeveeaaala..reegadv.viavGGGsviDtAKaia 101
                 +++++ + + +  + ak++livt   ++  + +l++++e l +ag+ v+  v  + e     ++++++ +++    +  d+ +ia+GGG   D+   +a
  EGE24991.1  23 DDQIDLVSQIIPFITAKQVLIVTNDVVA-PL-YLAQMQERLLSAGFHVEvcVLPDGEIYKNQDSINAIYDVLlgVHFARDCtLIALGGGVIGDMTGFAA 119
                 56667777777778899******99977.55.88999999988887777225556666677788888888773334445667***************** PP

                 HHTT..................--EEEEESS..-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHH CS
      Fe-ADH 102 lllanpevedylgegkakkkkalpliaiPTt..aGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDal 189
                 +   +                ++ +i +PTt  a  +s v +   i ++     + +   +  P++++ D +   tlP r +aa+++ ++
  EGE24991.1 120 ASFMR----------------GVNFIQVPTTllAQVDSSVGGKTGINHPCG---KNMIGAFWQPSCVLADMTTFQTLPEREFAAGMAEVI 190
                 *9995................59*******944566888888888884444...33333579***********************98776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.1
                 S-HHHHHHHHH..........HHHHHHT.......T--HHHHHHHHHHHHHTT---SHHHHT-TT CS
      Fe-ADH 272 lanaillpavlrfnaeaaperlaqlaralggesdeeaaeeliealrellkelglptsLselgvde 336
                  +++++++a++         + aq+   lg        +  +e++++++k+ +lpt+  +++v +
  EGE24991.1 266 WLHGEAVAAGM--------VQAAQMSYRLGLI-----RACDVERIENIIKKYHLPTKPPKIDVAQ 317
                 45666666666........2334444444332.....2234788888888888888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2721.36
//
Query:       EGE24992.1  [L=211]
Description: shikimate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-53  179.4   0.0    6.6e-53  179.1   0.0    1.1  1  SKI              Shikimate kinase
    1.1e-08   35.7   0.0    1.9e-08   34.9   0.0    1.4  1  AAA_18           AAA domain
    4.8e-05   23.3   0.2      0.024   14.5   0.0    2.1  2  dNK              Deoxynucleoside kinase
     0.0001   22.7   0.0    0.00017   22.0   0.0    1.4  1  AAA              ATPase family associated with various cellul
    0.00015   21.7   0.0    0.00031   20.8   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0002   21.2   0.0      0.017   14.9   0.0    2.2  2  Cytidylate_kin   Cytidylate kinase
    0.00028   21.3   0.0    0.00078   19.9   0.0    1.8  1  AAA_16           AAA ATPase domain
    0.00044   20.0   0.0       0.97    9.1   0.0    2.2  2  Thymidylate_kin  Thymidylate kinase
     0.0022   18.2   0.0      0.055   13.6   0.0    2.1  2  Cytidylate_kin2  Cytidylate kinase-like family
     0.0027   17.0   0.1      0.041   13.2   0.0    2.2  2  Zeta_toxin       Zeta toxin
     0.0033   17.2   0.0     0.0064   16.3   0.0    1.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0045   17.1   0.0     0.0078   16.4   0.0    1.6  1  AAA_33           AAA domain
     0.0094   15.9   0.0       0.03   14.2   0.0    1.8  2  Rad17            Rad17 P-loop domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.029   14.4   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
      0.013   15.2   0.0       0.26   10.9   0.0    2.2  2  CoaE             Dephospho-CoA kinase
      0.015   14.5   0.0      0.017   14.4   0.0    1.3  1  NB-ARC           NB-ARC domain
      0.019   15.4   0.1        2.7    8.4   0.1    2.3  2  AAA_17           AAA domain
      0.029   14.3   0.0       0.19   11.6   0.0    2.0  2  APS_kinase       Adenylylsulphate kinase
      0.033   14.7   0.0      0.077   13.5   0.0    1.5  1  ABC_tran         ABC transporter
      0.054   13.7   0.0       0.14   12.4   0.0    1.8  2  AAA_28           AAA domain
      0.077   13.3   0.2       0.17   12.2   0.1    1.8  2  AAA_22           AAA domain
       0.12   12.7   0.0       0.21   12.0   0.0    1.4  1  RNA_helicase     RNA helicase
       0.16   11.5   0.0       0.29   10.6   0.0    1.4  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   0.0   8.5e-56   6.6e-53       1     157 [.      34     189 ..      34     190 .. 0.98

  Alignments for each domain:
  == domain 1  score: 179.1 bits;  conditional E-value: 8.5e-56
                 TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHH CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleeeglViatGGGavlseenrellkekgiviyLdvsleell 99 
                 mGaGK+t+GkllAk+lg++fiD+D +i ++tg++i++ife+egeegFr++E+++l+el++  +++ atGGGav + +nrellk kg+viyLd+s++++l
  EGE24992.1  34 MGAGKTTIGKLLAKHLGRNFIDCDWYIVDQTGADIPWIFEKEGEEGFRDRETRALQELTALPNIIMATGGGAVGRTKNRELLK-KGLVIYLDASVDTQL 131
                 9**********************************************************************************.*************** PP

                 HHHHHTTSSGGGCSCHHHHHHHHHHH.HHHHHHCCSSCEEEECTSSHHHHHHHHHHHHH CS
         SKI 100 erlkadkeRPllqekskeeelleela.ereplyeeaadvvvdeseeskeevaeeileal 157
                 +r+k+dk+RPllq++++ +++le+l+ +r ply+e+ad+++ + ++ +++++ eile+l
  EGE24992.1 132 ARTKKDKNRPLLQAQNP-RAVLESLYkKRHPLYREVADIIILTGRAYPKQMIGEILEVL 189
                 *****************.788888888*****************************987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.5e-11   1.9e-08       1     117 [.      28     141 ..      28     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.5e-11
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikk... 96 
                 I+l G++G+GKtt++k L+k+l  g+n +d  +     ++ d + +  +k+ +e+++d+  +al+e  +      n+++    +    ++++++ k   
  EGE24992.1  28 IFLVGPMGAGKTTIGKLLAKHL--GRNFIDCDWYIVDQTGADIP-WIFEKEGEEGFRDRETRALQELTA----LPNIIMATGGGAVGRTKNRELLKkgl 119
                 99********************..99999998886666666666.666666666777777777777543....56788888888888888887777799 PP

      AAA_18  97 .vvLtaspeelleRlekRgyee 117
                  ++L+as ++ l R +k+++++
  EGE24992.1 120 vIYLDASVDTQLARTKKDKNRP 141
                 9***************998765 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.1e-05     0.024       2      26 ..      29      53 ..      28      66 .. 0.87
   2 !    7.1   0.0    0.0057       4.4     120     171 ..     114     167 ..     105     190 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.1e-05
                EEEESTTSSHHHHHHHHHCCSTCEE CS
         dNK  2 vveGnIgaGKstlvklLskklgvkv 26
                 + G++gaGK+t+ klL+k+lg ++
  EGE24992.1 29 FLVGPMGAGKTTIGKLLAKHLGRNF 53
                567******************9766 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0057
                 CCH-SEEEEEE--HHHHHHHHHH.CTTCCCT.TS-HHHHHHHHHHHHHHHTSGG CS
         dNK 120 lakpdlliYLkasletclerikk.Rgreeek.kieldYlekLhekyeewlkkln 171
                 l k  l+iYL+as++t l r kk ++r   + + +++ le+L +k ++ ++++ 
  EGE24992.1 114 LLKKGLVIYLDASVDTQLARTKKdKNRPLLQaQNPRAVLESLYKKRHPLYREVA 167
                 5556799*************9883444444457777788888777777776655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.2e-07   0.00017       2      31 ..      29      58 ..      28     100 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.2e-07
                EEESSTTSSHHHHHHHHHHHHTHEEEEEET CS
         AAA  2 llyGppGtGKTllakavakelgvefleisg 31
                 l+Gp G GKT++ k +ak+lg++f+  + 
  EGE24992.1 29 FLVGPMGAGKTTIGKLLAKHLGRNFIDCDW 58
                79**********************998765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   3.9e-07   0.00031       7      45 ..      14      51 ..       9      59 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.9e-07
                HHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  7 tealgkklakalgdvilLeGdLGaGKTtlvrglakalgv 45
                +e++g++l k+l  +i+L G++GaGKTt+ + lak+lg 
  EGE24992.1 14 VEKAGNALSKQL-PAIFLVGPMGAGKTTIGKLLAKHLGR 51
                456677777644.36********************9985 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.2e-05     0.017       3      29 ..      30      56 ..      28      59 .. 0.90
   2 ?    4.4   0.0     0.034        27     132     159 ..     119     147 ..      79     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-05
                    EE-STTSSHHHHHHHHHHHHT-EEEEH CS
  Cytidylate_kin  3 iDGPagsGKssvaralaeklglkyldt 29
                    + GP g+GK +++++la++lg +++d 
      EGE24992.1 30 LVGPMGAGKTTIGKLLAKHLGRNFIDC 56
                    56*********************9985 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.034
                     EEEEEE--HHHHHHHHHHHHHHTT--.-- CS
  Cytidylate_kin 132 lKifldAsveeRakRRlkqlkakgts.vs 159
                     l i+ldAsv++  +R  k++++   + ++
      EGE24992.1 119 LVIYLDASVDTQLARTKKDKNRPLLQaQN 147
                     669************99998776555444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     1e-06   0.00078      19      63 ..      20      68 ..      12     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1e-06
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrellralekd....ggiflrgkcdql 63
                + s + ++++l+G+ G GK+++ + l+++l ++    +++ + ++  + 
  EGE24992.1 20 ALSKQLPAIFLVGPMGAGKTTIGKLLAKHLGRNfidcDWYIVDQTGADI 68
                5566779*************************95555455544444444 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0012      0.97       6      25 ..      35      54 ..      32      60 .. 0.88
   2 !    8.8   0.0    0.0016       1.2     106     171 ..     106     171 ..      98     182 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
                     TSSHHHHHHHHHHHHHHTTE CS
  Thymidylate_kin  6 GaGKttqaellkerlkeegi 25
                     GaGKtt+ +ll+++l ++ i
       EGE24992.1 35 GAGKTTIGKLLAKHLGRNFI 54
                     9**************98876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0016
                      HHHHHGGGTTSE-SEEEEEESSHHHHHTSCCTTSSTT.TSHHHHHHHHHHHHHHHHHHHHTTSTEEE CS
  Thymidylate_kin 106 lvlslnedvllkPdltflldvdpevalkRlakrdeld.eeeeeqldflrkvrerylelakederili 171
                      + +++n+++l k  l+++ld +++++l+R +k + +   + +  + +l+++ ++ + l++e   i+i
       EGE24992.1 106 VGRTKNRELL-KKGLVIYLDASVDTQLARTKKDKNRPlLQAQNPRAVLESLYKKRHPLYREVADIII 171
                      5667788877.999*****************999954366777777888888877777765555555 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     7e-05     0.055       8      30 ..      34      56 ..      28      68 .. 0.89
   2 ?    2.5   0.0      0.18   1.4e+02      78     148 ..      77     154 ..      59     171 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7e-05
  Cytidylate_kin2  8 yGsgGetigeaLAekLglpfydr 30
                     +G+g++tig+ LA++Lg +f+d 
       EGE24992.1 34 MGAGKTTIGKLLAKHLGRNFIDC 56
                     8*******************996 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.18
  Cytidylate_kin2  78 ddelfeaqervirelaaeesvVivGRgadliLkd.....rpnvlrvfltapledrvkrvaeregl...seeearekike 148
                      ++ ++++++r+++el a  + +i+  g+  + +       ++ l ++l+a+ +  + r +++++    ++++ r  +++
       EGE24992.1  77 EEGFRDRETRALQELTAL-PNIIMATGGGAVGRTknrelLKKGLVIYLDASVDTQLARTKKDKNRpllQAQNPRAVLES 154
                      555677788888999888.777777777777666433333345679999999999999999887644445555555555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.2e-05     0.041      18      47 ..      27      54 ..      12      58 .. 0.85
   2 ?    1.5   0.0       0.2   1.6e+02      48      80 ..     150     182 ..     129     199 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.2e-05
  Zeta_toxin 18 lillgGqpGAGKselaellkdelerqgnvv 47
                +i+l+G  GAGK+++ +ll++ l  ++n++
  EGE24992.1 27 AIFLVGPMGAGKTTIGKLLAKHL--GRNFI 54
                79*******************99..77776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.2
  Zeta_toxin  48 rldpDdlRelhPeyeeilkadpkkaseltqkda 80 
                  + +  ++++hP y+e+ +    +  ++ ++ +
  EGE24992.1 150 AVLESLYKKRHPLYREVADIIILTGRAYPKQMI 182
                 5566789********976644444445555555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.2e-06    0.0064      24      62 ..      16      54 ..       7      73 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.2e-06
      RuvB_N 24 eaakkreealdhvllyGpPGlGkttlakiiakelgvklk 62
                +a ++ +++l  ++l+Gp G Gktt+ k++ak lg ++ 
  EGE24992.1 16 KAGNALSKQLPAIFLVGPMGAGKTTIGKLLAKHLGRNFI 54
                455667889999**********************99875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     1e-05    0.0078       2      34 ..      28      60 ..      28     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdtlr 34
                ++lvG+ G+GK+t  + l+k+lg  +++ d ++
  EGE24992.1 28 IFLVGPMGAGKTTIGKLLAKHLGRNFIDCDWYI 60
                689********************8888777644 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.9e-05      0.03      40      74 ..      21      54 ..       7      60 .. 0.74
   2 ?   -1.1   0.0         2   1.5e+03      96      96 ..     146     146 ..      83     207 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.9e-05
       Rad17 40 LesrkkriLLisGPsGCgkstvvkvLskelgiklr 74
                L ++    + + GP G gk+t+ k L+k lg +++
  EGE24992.1 21 LSKQLP-AIFLVGPMGAGKTTIGKLLAKHLGRNFI 54
                444422.45678******************98876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
       Rad17  96 t 96 
                  
  EGE24992.1 146 Q 146
                 1 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.7e-05     0.029       2      27 ..      28      53 ..      27      57 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.7e-05
                EEEE--SSSSHHHHHHHGGGGBS--E CS
       AAA_5  2 vlLvGppGtgKselaerlaaalnrev 27
                ++LvGp G gK+++ + la+ l+r++
  EGE24992.1 28 IFLVGPMGAGKTTIGKLLAKHLGRNF 53
                79********************9886 PP

>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00034      0.26       4      33 ..      29      59 ..      27      78 .. 0.90
   2 ?    2.1   0.0      0.17   1.3e+02       4      41 ..      99     136 ..      96     171 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00034
                EEEESTTSSHHHHHHHHHH.TT-EEEEHHHH CS
        CoaE  4 gltGgiasGKstvanlfad.lgvpivDaDlv 33
                 l G +++GK+t+ +l+a+ lg + +D D +
  EGE24992.1 29 FLVGPMGAGKTTIGKLLAKhLGRNFIDCDWY 59
                58899*************999*******975 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
                 EEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHTTCCT CS
        CoaE   4 gltGgiasGKstvanlfadlgvpivDaDlvArqvvepg 41 
                   tGg a G++   +l+++  v  +Da +  + +++++
  EGE24992.1  99 MATGGGAVGRTKNRELLKKGLVIYLDASVDTQLARTKK 136
                 55777777777777777777777777754333333333 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.1e-05     0.017       2      62 ..      11      64 ..      10     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.1e-05
                HHHHHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESX CS
      NB-ARC  2 eksvekviekLlekdelqslvvalvGmgGvGKttlakqilnksdevegrFdsvawvvvskt 62
                e +vek  + L+ k+ +    ++lvG  G GKtt+ k   ++   + ++F  + w  v +t
  EGE24992.1 11 EVMVEKAGNALS-KQLP---AIFLVGPMGAGKTTIGKLLAKH---LGRNFIDCDWYIVDQT 64
                568899999999.4444...6**************9999888...9999988888887765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0035       2.7       1      23 [.      31      53 ..      31      56 .. 0.88
   2 ?    4.7   0.0     0.047        37     101     126 ..     116     141 ..     100     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0035
                EE-TTSSHHHHHHHHHHHHTEEE CS
      AAA_17  1 lGgPGsGKgtqceklvekygfth 23
                +G+ G+GK+t+ + l++++g  +
  EGE24992.1 31 VGPMGAGKTTIGKLLAKHLGRNF 53
                799**************998655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.047
                 ..SEEEEEE--HHHHHHHHHHHTTST CS
      AAA_17 101 kpdaiilleadpeeilerrlkdrtrg 126
                 k  ++i+l+a+ ++ l+r +kd++r 
  EGE24992.1 116 KKGLVIYLDASVDTQLARTKKDKNRP 141
                 44589*****************9985 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00025      0.19       4      30 ..      27      53 ..      24      68 .. 0.87
   2 ?    0.2   0.0      0.81   6.3e+02      88     120 ..     107     136 ..      93     145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
                EEEEESSTTSSHHHHHHHHHHHHHHTT CS
  APS_kinase  4 vvwltGlsgsGKstianalekkLvekg 30
                 ++l G +g+GK+ti + l+k+L ++ 
  EGE24992.1 27 AIFLVGPMGAGKTTIGKLLAKHLGRNF 53
                599******************998765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.81
                 HHHHHHHHHHCHTEEEEEEEE--HHHHHHHTTT CS
  APS_kinase  88 eReaarelleealkfievfvdtplevceerDpk 120
                  R++ rell+++   + +++d+++++  +r +k
  EGE24992.1 107 GRTKNRELLKKG---LVIYLDASVDTQLARTKK 136
                 588889999987...667777777766666554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.9e-05     0.077      14      34 ..      28      48 ..      22      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.9e-05
                EEEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagl 34
                + +vG+ GaGK+t+ klla++
  EGE24992.1 28 IFLVGPMGAGKTTIGKLLAKH 48
                789***************986 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00018      0.14       2      25 ..      28      52 ..      27      92 .. 0.89
   2 ?   -2.9   0.0       8.8   6.9e+03     122     146 ..     135     157 ..     109     169 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
      AAA_28  2 ivitGgestGKTtlleaLaar.gyp 25
                i ++G+ ++GKTt+ + La++ g +
  EGE24992.1 28 IFLVGPMGAGKTTIGKLLAKHlGRN 52
                889****************998655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.8
      AAA_28 122 dddgeRredleereaiderlrealr 146
                 ++d++R+    ++++  ++l+++++
  EGE24992.1 135 KKDKNRPL--LQAQNPRAVLESLYK 157
                 33444432..234444444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00021      0.17       7      29 ..      27      49 ..      22     124 .. 0.89
   2 ?   -1.2   0.0         3   2.3e+03      39      39 ..     139     139 ..      94     194 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
      AAA_22  7 ilvvtGesGtGKTtllrrlleql 29
                 ++++G+ G+GKTt  + l++ l
  EGE24992.1 27 AIFLVGPMGAGKTTIGKLLAKHL 49
                589***************99987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3
      AAA_22  39 r 39 
                 +
  EGE24992.1 139 N 139
                 1 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00027      0.21       1      29 [.      28      54 ..      28      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00027
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklk 29
                  i+l+Gp g GK+t+ k Lak+l +++  +
    EGE24992.1 28 IFLVGPMGAGKTTIGKLLAKHLGRNF--I 54
                  789*******************9877..3 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00037      0.29      27      58 ..      19      50 ..       8      66 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00037
       AAA_7 27 elllknkkpvllvGptGtGKtviikdllkkld 58
                + l k+   ++lvGp G GKt+i k l k+l 
  EGE24992.1 19 NALSKQLPAIFLVGPMGAGKTTIGKLLAKHLG 50
                66777778899***********9998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1418.50
//
Query:       EGE24993.1  [L=473]
Description: type IV pilus secretin PilQ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-45  154.7   0.9      3e-45  153.9   0.9    1.4  1  Secretin    Bacterial type II and III secretion system protei
    1.7e-11   44.3   0.4    4.5e-11   43.0   0.4    1.8  1  Secretin_N  Bacterial type II/III secretion system short doma
    4.4e-05   23.2   0.0    0.00017   21.3   0.0    2.1  2  STN         Secretin and TonB N terminus short domain


Domain annotation for each model (and alignments):
>> Secretin  Bacterial type II and III secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   0.9     5e-49     3e-45       1     170 []     319     473 .]     319     473 .] 0.94

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 5e-49
    Secretin   1 aleqegkakvlstPklltldneeAeievgqevpvqvtsetgsstgatttatevefkevglsLkvtPqvtedgsirlkidvevssiassqavtaegnsvp 99 
                 a++ e++ +v+stPk+lt+d+++A+i++g ++p+q t+++g        a++++fke+ l+L+ tP +t+dg+i lk+++++ ++ ++        +  
  EGE24993.1 319 AMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSG--------ASTTKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT-------LGHI 402
                 799********************************333333........33488********************************96.......6889 PP

    Secretin 100 tisrrelkttvrvkdgetlviGGliqdeeseseskvPlLgdiPllGaLFksttkskektellifitPrivk 170
                 +i++  ++t+v+++dg+t+v+GG+++++++e  +kvP Lgd+P+lG+LF++++k ++k+ellifitP++v+
  EGE24993.1 403 AIQEDAIETNVIIEDGQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473
                 9*******************************************************************996 PP

>> Secretin_N  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.4   7.5e-15   4.5e-11       2      82 .]     128     230 ..     127     230 .. 0.93

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 7.5e-15
                 EEEE-SSS-HHHHHHHHHHHCCTT...................................SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHHCT CS
  Secretin_N   2 rvfpLkyasaadlasiLrellgggggesas......................sgassqsgallgkggrvvadprtNsllvrgspervarirqlikqLDv 78 
                 + ++L+ya a d+a+++ +  +++g+ + +                         ++  g+ll+++g+v++d rtN+l++++ p+ va+i+ li+++D+
  EGE24993.1 128 EYIRLNYALADDVATLIMGEKTQRGNVNRTnhrdviypeaplsrayntqtdeLITTAVRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKALIERIDI 226
                 679**************98887777766669********************99999******************************************* PP

                 SSSE CS
  Secretin_N  79 praq 82 
                 p +q
  EGE24993.1 227 PVEQ 230
                 *887 PP

>> STN  Secretin and TonB N terminus short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.65   3.9e+03      16      32 ..      47      63 ..      45      64 .. 0.86
   2 !   21.3   0.0   2.9e-08   0.00017       2      52 .]      70     117 ..      69     117 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.65
         STN 16 vslnignvtideaLdeL 32
                +sl + + ++ +++d+L
  EGE24993.1 47 ISLEFADIPVRAVFDIL 63
                68889999*******98 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 2.9e-08
         STN   2 nfiydselvrgnqtvslnignvtideaLdeLLkgtgLqykitgntirispk 52 
                 n+i d + v+g  + ++++ n ++d+a+d +L+  +L+    gn+++is k
  EGE24993.1  70 NIITD-DSVTG--SMTIRLMNIPWDQAFDVILQTQNLSVLKHGNVWLISSK 117
                 78888.9****..*************************9998899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 3161.34
//
Query:       EGE24994.1  [L=216]
Description: type IV pilus biogenesis protein PilP [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-29  100.5   0.1      8e-28   97.2   0.0    1.9  2  PilP      Pilus assembly protein, PilP


Domain annotation for each model (and alignments):
>> PilP  Pilus assembly protein, PilP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.1    0.0072   1.3e+02       9      63 ..      36      89 ..      29      95 .. 0.63
   2 !   97.2   0.0   4.4e-32     8e-28      36     145 ..     102     210 ..      76     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0072
        PilP  9 vkarpkgkieplpeikpyeafaYsaaelrdPFkppkeeeeekkekak.ksslqpdl 63
                ++++ +  i++   i    ++ Y++ +  dPF +p ++ e  +++++ +++ +p++
  EGE24994.1 36 ITHEERMAISEPVPIPLSVPMIYQQGK--DPFINPYRNVEVLDTNHAaDQQDEPKT 89
                566667777777778888899997665..899888777665444433244445544 PP

  == domain 2  score: 97.2 bits;  conditional E-value: 4.4e-32
        PilP  36 lrdPFkppkeeeeekkekakksslqpdlnrrkepLEkypLdsLkmvGtlkkegklwalvrtpdgkvyrvkvGnylGqnyGritkiteteielkEivpdg 134
                   +P ++ + ++++++   k++ +  d+nr +epLE+y+L+sL++ G + ++ +l+al+ +pdg v+rv +G+ylG+n+G+it+i++++i+l+E v d 
  EGE24994.1 102 PSQPSDTHQSAKAQAQV-FKGDPIVIDTNRVREPLESYELSSLRYHGRIFDDVRLVALIMSPDGIVHRVSTGQYLGKNHGKITHIDSRTIHLIEAVADT 199
                 23444444444444333.349999*************************************************************************** PP

        PilP 135 ageWvereasL 145
                 +g++  r  ++
  EGE24994.1 200 QGGYYRRDVNI 210
                 *******9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1642.85
//
Query:       EGE24995.1  [L=212]
Description: type IV pilus biogenesis protein PilO [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-23   82.7   1.5      4e-23   82.2   1.5    1.2  1  PilO         Pilus assembly protein, PilO
     0.0024   17.7   0.1     0.0043   16.8   0.1    1.5  1  T2SSM_b      Type II secretion system (T2SS), protein M subty
  ------ inclusion threshold ------
      0.035   13.8   0.1      0.061   13.0   0.1    1.4  1  Tetraspanin  Tetraspanin family
      0.041   13.9   4.3       0.13   12.3   2.7    2.2  2  T2SSM        Type II secretion system (T2SS), protein M
      0.072   12.9   2.2       0.12   12.2   1.6    1.7  1  DUF2570      Protein of unknown function (DUF2570)
       0.51   10.4   3.9       0.82    9.7   3.6    1.5  1  DUF454       Protein of unknown function (DUF454)


Domain annotation for each model (and alignments):
>> PilO  Pilus assembly protein, PilO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   1.5   1.3e-26     4e-23       1     144 [.      58     197 ..      58     199 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 1.3e-26
        PilO   1 lekaeakekeLkkefeekkekaanLeklkkqleeleeeleellkqLPskkeipsLLedinqaglksgLefelfkpgaevekefyaelPikievtGsYhd 99 
                 l++a+++e  L +ef++k++ka++ ++l +q+ + +++le++l+ LP ++ +++++  in+ ++  ++++ + +++a  e+++y+e Pi+++ tG+Yh 
  EGE24995.1  58 LNAAQSQESALIDEFATKYHKAQQFDHLSHQVIQKNTQLENQLNALPRTAPMSEIIGMINTKAQAVNVQVVSASVQAGREQDYYTERPIAVSATGDYHA 156
                 67899********************************************************************************************** PP

        PilO 100 igaFvsavakLpRIvtledlklkkakeenekstLklsvtakTYry 144
                 +g+ + ++++ +  +t++d++lk   ++    +L + v++kTY+ 
  EGE24995.1 157 LGRWLLELSEANHLLTVHDFDLKAGLNH----QLMMIVQMKTYQA 197
                 ************************9999....9**********97 PP

>> T2SSM_b  Type II secretion system (T2SS), protein M subtype b
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.4e-06    0.0043      21      87 ..     114     180 ..      95     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-06
     T2SSM_b  21 qrvralvsaaggsltssqvlpageegkvrriavrvslegeleaLqklLasLeaqrPflfVDelsvqa 87 
                   +++ ++a ++++ s+ v   +e++ ++  +++vs++g++ aL + L +L +++ +l+V + +++a
  EGE24995.1 114 GMINTKAQAVNVQVVSASVQAGREQDYYTERPIAVSATGDYHALGRWLLELSEANHLLTVHDFDLKA 180
                 5678888999**************************************************9998874 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     2e-05     0.061      36      71 ..      17      50 ..       5      55 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
                 .................XXXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin 36 acllsesaedpailaillivvGvllfllgflGciga 71
                 + + ++ a++p+++   l v+G +++++g++G++ a
   EGE24995.1 17 QVNRHTIAQSPKYI--QLTVLGLIMMIIGIFGWLLA 50
                 45567788899999..7***************9877 PP

>> T2SSM  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.7   4.5e-05      0.13      18     119 ..      33     133 ..       6     136 .. 0.79
   2 ?    0.8   0.0      0.15   4.4e+02     118     143 ..     154     180 ..     150     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX--HHHHHHHHHHHCT-.-EEEEEEETT.EEEEEE- CS
       T2SSM  18 llaalglvlllallylllwqPlserieraqaelqklraqlawveeqaaevralr.aapasalsgaaleqvvtrsarqagL.alarlqpqgdgsvqvwle 114
                  +++l ++++  + +ll + P  ++  +aq++  +   +++++ ++ +++++ +  + ++ +++++le+ +++  r a + +++ + +   ++v v++ 
  EGE24995.1  33 TVLGLIMMIIGIFGWLLAILPTIQKLNAAQSQESA---LIDEFATKYHKAQQFDhLSHQVIQKNTQLENQLNALPRTAPMsEIIGMINTKAQAVNVQVV 128
                 34455556666789*******99999999987555...5556666666666666555777788889999999999999998899999999999999999 PP

                 -B-HH CS
       T2SSM 115 evpfe 119
                 +++++
  EGE24995.1 129 SASVQ 133
                 98876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHH.S--EEEEEEEEE CS
       T2SSM 118 feallrWLaeleeq.qgvsveeadldr 143
                 + al rWL el e+ + + v+++dl++
  EGE24995.1 154 YHALGRWLLELSEAnHLLTVHDFDLKA 180
                 67999***9997651567899988876 PP

>> DUF2570  Protein of unknown function (DUF2570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.6   4.1e-05      0.12       5      72 ..      35     102 ..      28     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
     DUF2570   5 gklaliilgLgvwlwsqsqkidsLraenkaqaqlieeqqkanqrLteqLeqerqavekqqkianelka 72 
                   l ++i+g+ +wl+    +i++L+a +  +  li e     ++ ++  +  +q ++k  +  n+l+a
  EGE24995.1  35 LGLIMMIIGIFGWLLAILPTIQKLNAAQSQESALIDEFATKYHKAQQFDHLSHQVIQKNTQLENQLNA 102
                 34455699******************988888888876666666555556788999999999998865 PP

>> DUF454  Protein of unknown function (DUF454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.6   0.00027      0.82       4      28 ..      32      56 ..      29      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00027
      DUF454  4 llllGllslalGviGivlPlLPTtp 28
                l++lGl+++++G+ G +l +LPT+ 
  EGE24995.1 32 LTVLGLIMMIIGIFGWLLAILPTIQ 56
                689********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1461  (0.0814881); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 1707.71
//
Query:       EGE24996.1  [L=625]
Description: type IV pilus biogenesis protein PilMN [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-26   92.8   2.1    3.2e-26   92.2   0.3    2.1  2  PilM_2      Type IV pilus assembly protein PilM;
    1.9e-13   50.3   0.5    6.5e-13   48.6   0.1    2.2  2  PilN        Fimbrial assembly protein (PilN)
  ------ inclusion threshold ------
      0.023   14.1   0.0      0.045   13.1   0.0    1.5  1  SCF         Stem cell factor
      0.033   14.6   4.8       0.53   10.7   0.8    3.2  2  MitMem_reg  Maintenance of mitochondrial structure and functi
       0.85    9.6   3.7         29    4.6   0.1    3.1  3  MIT_C       Phospholipase D-like domain at C-terminus of MIT


Domain annotation for each model (and alignments):
>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.3   8.9e-30   3.2e-26       1     188 [.      20     195 ..      20     249 .. 0.85
   2 ?   -1.0   0.1      0.19   6.8e+02     274     338 ..     361     423 ..     340     425 .. 0.74

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 8.9e-30
      PilM_2   1 GiDissssvklvelskkkgslrvealaieplekdavvdreikdieavsealkrvvkklktrvkevaiavpgsavitkkialdadLteeeleaqvelead 99 
                 Gi ++ ++v +v l++++g+++    a++ + +d+vv ++i d+e+++++l++++++l+ ++ +++  vp  av++  i ++adL++e++eaq+ ++a+
  EGE24996.1  20 GIYFGEKAVTAVWLDEHDGRYHWLGSACV-FYTDVVVSGKIVDKEKLAQTLRQMMQTLGLSQANAITCVPDDAVMQTLIDMPADLSDEDIEAQILVDAE 117
                 7889********************99996.6789***************************************************************** PP

      PilM_2 100 qliPfpldevslDFevlgpsaekpdkvevllaAarkekvedrvalleaaglkakvvDvesyAleraleliasqlpdkgkekvvaivdig 188
                 ++i   +++v++DF+vl+ s       ++ l+ a++++++d  ++l ++g++a+ vDv    l+r ++ +++q++         +v+i 
  EGE24996.1 118 RYIGRNIQDVYFDFQVLERSSVA---TQITLTVAHQNSIHDCCEVLAMVGIEAVAVDVHTSCLARMMAKMTAQVSA--------LVEIT 195
                 ****************9887654...5699*****************************99999977777766653........33333 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.19
      PilM_2 274 kvdkilLaGGt.aslpgleelleeelgisttvanpfaemelsekvrakklardapsylvAcGLAlr 338
                  +++++++G t  + + l+e+l+ +l+i +  + p     +++ ++ ++++ +ap +  A+ LAl 
  EGE24996.1 361 PIERLYISGTTwTKASQLAEALQAKLDILCLPMHPKYA--VNHAIEDNDME-QAPMLTAAAALALT 423
                 57888999987356788999999999999988888655..55556677775.57888888888885 PP

>> PilN  Fimbrial assembly protein (PilN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.6   9.3e+03      45      63 ..     134     152 ..     131     155 .. 0.84
   2 !   48.6   0.1   1.8e-16   6.5e-13       3      77 ..     525     595 ..     523     596 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.6
        PilN  45 Legspffknidlksaeqkt 63 
                 Le+s + ++i l+ a q++
  EGE24996.1 134 LERSSVATQITLTVAHQNS 152
                 8999999999999998876 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 1.8e-16
        PilN   3 ldeLsravPkgvwltsisqegnqltitGsAvsndeVaefmrnLegspffknidlksaeqkttkgkslveFtitlt 77 
                 +++Ls+ +P+gv+l ++sq ++ l +tG Avs ++V++f ++Le s++ +++ ++s +q++    ++ +Ft+t+t
  EGE24996.1 525 WQQLSNLIPEGVYLDEMSQAADMLGLTGKAVSTQSVSAFAHRLELSGLYTDVLVVSLQQAD----QAMSFTLTAT 595
                 89***********************************************************....79*****997 PP

>> SCF  Stem cell factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.3e-05     0.045     204     269 ..     435     500 ..     412     505 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
         SCF 204 kalgsisdsslqwiaialpsllslliGfilGalywkkkqpklkleveniqineedneismlqekek 269
                 +   s  d++++ i +++  l  l++ +i+Ga+y++ +q++ +++  +++i+  d++i  +q+ ++
  EGE24996.1 435 EERRSQADAKFRQIFVSVVGLAVLVMMLIFGAIYYRLNQQQAINDEIKTRISTLDDKIHQMQQLKE 500
                 5566788999999****************************9999999999999999998887544 PP

>> MitMem_reg  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.019        68      35      91 ..     210     285 ..      47     293 .. 0.79
   2 ?   10.7   0.8   0.00015      0.53      14      92 ..     475     548 ..     461     593 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
  MitMem_reg  35 i...................lqerldlikdYlkkveegelpvnhe.ilrnlqkllnllPhleteelekefnvetnDv 91 
                                      q+ ld+ +++  +v + +  +n++ ++ n ++l  +l + ++  ++++f + ++D 
  EGE24996.1 210 LyqqnepihtltnfgnqpldEQSELDQFSQFTHDVDTPKNWPNQStLTMNFGDLTDRLSKTNA-SIQNDFVQPLQDN 285
                 044444444455555555446788999999999999999888988899999999999998887.7777777777765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00015
  MitMem_reg  14 siqdas.stlstglnrqyyslkilqerldlikdYlkkveegelpvnheilrnlqkllnllP...hleteelekefnvetnDvl 92 
                 ++++++ +t ++ l+ + +++++l+e ld++++  +++    l  + ++ +  q+l nl+P    l++       ++++ D+l
  EGE24996.1 475 QAINDEiKTRISTLDDKIHQMQQLKEQLDTAQKHSEALN--ALSEDRQVAYRWQQLSNLIPegvYLDE-------MSQAADML 548
                 33333357999****************************..9999****************8655555.......33444444 PP

>> MIT_C  Phospholipase D-like domain at C-terminus of MIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0099        36      52      94 ..     111     156 ..      91     163 .. 0.76
   2 ?    4.6   0.1     0.008        29      56     109 ..     247     300 ..     212     316 .. 0.83
   3 ?   -1.0   0.2      0.46   1.6e+03      46      77 ..     478     510 ..     460     519 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0099
       MIT_C  52 kLlTsede...eeedeqkenleelkesleklgielevefsstihdr 94 
                 ++l   ++   ++ +++   ++ l++s  +++i+l+v+ +++ihd 
  EGE24996.1 111 QILVDAERyigRNIQDVYFDFQVLERSSVATQITLTVAHQNSIHDC 156
                 55555555455566667778999*********************95 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.008
       MIT_C  56 sedeeeedeqkenleelkesleklgielevefsstihdreirldngwiikigrG 109
                  ++  ++++ + n+ +l++ l+k++ +++ +f + ++d  i+ + +  ik   G
  EGE24996.1 247 PKNWPNQSTLTMNFGDLTDRLSKTNASIQNDFVQPLQDNFIQKTPDIAIKAQTG 300
                 444467788899******************************999999998777 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.46
       MIT_C  46 kklkkikLlTsede.eeedeqkenleelkesle 77 
                 ++++k ++ T  d+ +++++ ke+l++ +++ e
  EGE24996.1 478 NDEIKTRISTLDDKiHQMQQLKEQLDTAQKHSE 510
                 566677777777777666777777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1690  (0.0942607); expected 358.6 (0.02)
Passed bias filter:                      979  (0.0546043); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 4287.50
//
Query:       EGE24997.1  [L=489]
Description: (dimethylallyl)adenosine tRNA methylthiotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-28   98.6   0.1    3.1e-28   97.7   0.1    1.5  1  UPF0004      Uncharacterized protein family UPF0004
    2.5e-27   96.3   0.0      4e-27   95.6   0.0    1.3  1  Radical_SAM  Radical SAM superfamily
    8.4e-09   35.3   0.0    1.6e-08   34.4   0.0    1.5  1  TRAM         TRAM domain


Domain annotation for each model (and alignments):
>> UPF0004  Uncharacterized protein family UPF0004
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.1   5.2e-32   3.1e-28       1      98 []      37     137 ..      37     137 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 5.2e-32
                 XEEEE--S-CCCCHHHHHHHHHTTTS.SS----SSS--SEEEEEE--SSSSHHHHTHHHHHHHHTTS..T.--EEEEEEHHHHS-HHHHHHH-TTS-EE CS
     UPF0004   1 kvaietlGCqmNevdseelaslLkke.gyelvedeeeAdvvlvnTCavrekaekkviqalrelkalk..kpekkvvvlGCmaqrekeellkeepevdlv 96 
                 kv+i+t GCqmNe+ds+++ ++L ++ g+ +++d ++Adv+++nTC++reka++kv+++l+++++lk  +p+  ++v GC+a++e+++++k++p+vd+v
  EGE24997.1  37 KVYIVTQGCQMNEYDSQKMGDVLGSShGMVITNDINDADVLIMNTCSIREKAQEKVFSELGRWRKLKekNPNLVIGVGGCVASQEGDNIQKRAPYVDMV 135
                 89*********************76449**************************************977799*************************** PP

                 E- CS
     UPF0004  97 lg 98 
                 +g
  EGE24997.1 136 FG 137
                 98 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   6.7e-31     4e-27       1     166 [.     195     368 ..     195     369 .. 0.92

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 6.7e-31
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC........CCTEEEEEEECSSCHG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla........vpgiritvetngtlpd 90 
                  v++++gC+  CsfC +p+   ++g + s++++++l+e+++l ae+gv+ev l+g++++ y+ + ++   ++  +        +   ri+++t+++l  
   EGE24997.1 195 VSIMEGCSKYCSFCVVPY---TRGEELSRPLDDVLAEIDSL-AEQGVREVNLLGQNVNGYRGEKDDGSICRFSEllhyvsyiDGIERIRYTTSHPLEF 288
                  689**************9...7*******************.8*****************98888888888888999999999999999999999955 PP

                  .HHHHHHHHHTT..-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSHHHHHHHHHH CS
                  .xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  91 .eeklerllelg..vdrvslgleaaddekvlklmnrghtfeevlealeklreagikr...vvdrivglpGendeeleellel 166
                   ++++e+       v +++l+++++++  vl  m+r+ht++ +++ + klr+   ++   ++d+i+g+pGe+de++ ++l++
   EGE24997.1 289 tDDIIEAYQSIDklVSHLHLPIQSGSNQ-VLAAMKRNHTVDVYMNQIAKLRKI-RPDlhlSSDFIIGFPGETDEDFLQTLQF 368
                  877777777766777*************.************************.7999*********************998 PP

>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.8e-12   1.6e-08       2      54 ..     423     476 ..     422     485 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.8e-12
                 XXXXXEEEEEEEEE-..TTSEEEEEET.TEEEEETT--T..TEEEEEEEEEE-S CS
        TRAM   2 syvGstqeVlvegls.ksegegiGrtdngkvvfvpgdlpgIGdfVeVkItkvkr 54 
                 ++vG+t++Vl e+++ +++g ++G  dn + v+++ d   +G+fV +kItk+ +
  EGE24997.1 423 AMVGQTLRVLAEEPAnRRQGYLHGTADNTRSVIFKADTDLLGKFVMIKITKAIS 476
                 69**********************************97779**********966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3572.12
//
Query:       EGE24998.1  [L=41]
Description: hypothetical protein EA1_06961 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 336.58
//
Query:       EGE24999.1  [L=669]
Description: lytic transglycosylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-27   93.3   0.2    1.7e-26   92.1   0.2    1.6  1  SLT              Transglycosylase SLT domain
     0.0015   19.0   0.1     0.0039   17.6   0.1    1.7  1  BTAD             Bacterial transcriptional activator domain
     0.0081   16.2   4.8       0.02   14.9   0.1    2.6  2  Phage_lysozyme2  Phage tail lysozyme
  ------ inclusion threshold ------
       0.16   12.2   7.2         14    6.0   1.9    4.0  4  ANAPC3           Anaphase-promoting complex, cyclosome, subun
       0.26   12.0   3.7         13    6.8   0.5    3.5  2  TPR_4            Tetratricopeptide repeat
       0.36   11.2   3.8        2.8    8.4   0.4    3.1  2  TPR_8            Tetratricopeptide repeat
       0.97   10.2   7.4       0.17   12.6   0.8    3.2  3  TPR_6            Tetratricopeptide repeat
        2.9    9.0   8.3         32    5.7   0.2    4.2  4  TPR_14           Tetratricopeptide repeat
        7.2    7.2   7.9        2.7    8.6   1.4    3.2  3  TPR_19           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.2   8.8e-30   1.7e-26       6     109 ..     516     619 ..     512     627 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 8.8e-30
                 HHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHHHHHT CS
         SLT   6 aekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyngslllalaAYNaGegtvkka 104
                  +++ g++p  ++ i+++ES+f+p A+s++ga GLmQi+psta+++++++++s+ ++ +P +ni++g+++L++l ++ +g+   a a+YNaG+++ +++
  EGE24999.1 516 HSRNAGIDPAWAYGIMRQESRFQPSAQSGAGAGGLMQIIPSTATQIARSLGESTGNMSNPDTNIRYGTWFLNDLANRARGQIAVATASYNAGPNAARRW 614
                 567889********************************************************************************************* PP

                 THSSH CS
         SLT 105 kkevk 109
                   + +
  EGE24999.1 615 VPTHG 619
                 87666 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1     2e-06    0.0039      65     123 ..     333     391 ..     308     395 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHH.HHHHHHHTT-HHHHHHHHHHHH CS
        BTAD  65 lealaeaelrlGraeealaelealvaehPlrErlhrq.lmrAlarsGrqaeALevYerlr 123
                  e+ a+a +++G+++++++  +a++a +  +Er ++  l rA+ ++G+qa+A   Y++l 
  EGE24999.1 333 AEDYAQAAIYFGQWSDVITAISAMTAVEQ-QERIWQYwLARAYEQLGQQAKAQHIYHNLA 391
                 68999****************99988775.66666652789****************986 PP

>> Phage_lysozyme2  Phage tail lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.4      0.11   2.2e+02      84     143 .]     329     390 ..     265     390 .. 0.80
   2 !   14.9   0.1   9.8e-06      0.02      25     110 ..     529     605 ..     513     635 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.11
  Phage_lysozyme2  84 lkelknqys......ssektakkalksatsveeaakaflksferpgdesakleeRqaaAqkiydkl 143
                      ++e  ++y+      ++++++ +a+ ++t+ve+  + +++   r+  +  ++   qa+Aq+iy++l
       EGE24999.1 329 NYEEAEDYAqaaiyfGQWSDVITAISAMTAVEQQERIWQYWLARA--Y--EQLGQQAKAQHIYHNL 390
                      344444342366778899999999999******999997444444..4..4688999999999875 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 9.8e-06
  Phage_lysozyme2  25 GniqqEsgfnpgavesalskggggyGlvQWtgsrrtallkyakakgknwkdlevqlefllkelknqysssektakkalksatsvee 110
                      G + qEs+f+p+a+      g g+ Gl+Q  +s+ t++ + + +  +n ++ ++ +++  + l++      + a+ ++  at+ ++
       EGE24999.1 529 GIMRQESRFQPSAQS-----GAGAGGLMQIIPSTATQIARSLGESTGNMSNPDTNIRYGTWFLND----LANRARGQIAVATASYN 605
                      779**********98.....9**********************9999999999999999999998....44444444444444444 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.6   1.2e+03      29      61 ..     102     134 ..      91     139 .. 0.85
   2 ?    5.3   0.1     0.012        23      50      76 ..     243     269 ..     235     273 .. 0.82
   3 ?   -0.5   0.0      0.76   1.5e+03      62      80 ..     336     354 ..     315     356 .. 0.73
   4 ?    6.0   1.9    0.0068        14      17      49 ..     358     390 ..     326     402 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.6
                 HHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHH CS
      ANAPC3  29 lAlclylngqykrAyellrkaklnskslgcryl 61 
                 +A+   ++g+y +   ++++ +  ++s++c++ 
  EGE24999.1 102 YAEIKARQGDYASVRAVADSIENPDESEACAIA 134
                 6777789************99999999999875 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.012
                 SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  50 klnskslgcrylfAqcllkLkkyeeAi 76 
                 +++s++ +++y++A +ll+  +y eA 
  EGE24999.1 243 ESYSNTNQYLYVYAISLLAHRSYSEAA 269
                 457899999***********9999996 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.76
                 HHHHHHHTT-HHHHHHHH- CS
      ANAPC3  62 fAqcllkLkkyeeAiaaLe 80 
                 +Aq+++  +++ + i+a++
  EGE24999.1 336 YAQAAIYFGQWSDVITAIS 354
                 7888888999999888875 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0068
                 .HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  17 aaetespedayllAlclylngqykrAyellrka 49 
                 a e++     y+lA ++ ++gq  +A+++++++
  EGE24999.1 358 AVEQQERIWQYWLARAYEQLGQQAKAQHIYHNL 390
                 5566666669*******************9987 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.045        89       5      25 ..     100     120 ..      98     121 .. 0.87
   2 ?    6.8   0.5    0.0064        13       4      21 ..     367     384 ..     366     386 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.045
       TPR_4   5 laLArallalGdldeAralle 25 
                 +++A+  +++Gd++  ra+++
  EGE24999.1 100 ADYAEIKARQGDYASVRAVAD 120
                 6789999*******9999986 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0064
       TPR_4   4 llaLArallalGdldeAr 21 
                 +++LAra+ +lG+ + A+
  EGE24999.1 367 QYWLARAYEQLGQQAKAQ 384
                 689***********9996 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2      0.14   2.8e+02      15      29 ..     328     342 ..     323     343 .. 0.83
   2 ?    8.4   0.4    0.0014       2.8       5      24 ..     368     387 ..     367     388 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.14
                 T-HHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekale 29 
                  +yeeA+ y + a++
  EGE24999.1 328 FNYEEAEDYAQAAIY 342
                 689*****9999985 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0014
                 HHHHHHHHHTT-HHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyy 24 
                 y+l+++y++lg+  +A+  y
  EGE24999.1 368 YWLARAYEQLGQQAKAQHIY 387
                 89**************8776 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.8   1.8e+04      25      32 ..      84      91 ..      83      92 .. 0.83
   2 ?   -1.1   0.2         2     4e+03      10      24 ..     330     344 ..     328     345 .. 0.75
   3 ?   12.6   0.8   8.6e-05      0.17       3      27 ..     367     391 ..     366     392 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.8
                HHHHH-TT CS
       TPR_6 25 rlikeYPd 32
                +++ +YP 
  EGE24999.1 84 QFVHQYPS 91
                899****7 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAleale 24 
                 y+++ d+++A  ++ 
  EGE24999.1 330 YEEAEDYAQAAIYFG 344
                 677669999988875 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 8.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerli 27 
                 +y+la++y++lg+ +kA  ++ +l 
  EGE24999.1 367 QYWLARAYEQLGQQAKAQHIYHNLA 391
                 7*********99********99886 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.016        32       3      38 ..      98     131 ..      96     137 .. 0.82
   2 ?   -1.1   0.1       2.5     5e+03      16      28 ..     329     341 ..     324     346 .. 0.83
   3 ?   -0.0   0.2       1.1   2.2e+03       6      38 ..     335     366 ..     330     369 .. 0.66
   4 ?    4.4   0.8     0.041        81       4      21 ..     367     384 ..     363     392 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.016
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeaw 38 
                 + +++ae+ +++Gd++  +a+++ +   +Pd+ ea 
  EGE24999.1  98 LAADYAEIKARQGDYASVRAVADSI--ENPDESEAC 131
                 5689************999999888..588888775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.5
      TPR_14  16 dpdeAiallrral 28 
                 +++eA++++++a+
  EGE24999.1 329 NYEEAEDYAQAAI 341
                 6788999888885 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 1.1
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeaw 38 
                 ++a+a    G++ + i++  ++ a   +++++w
  EGE24999.1 335 DYAQAAIYFGQWSDVITAISAMTA-VEQQERIW 366
                 678888888888888888887755.33445555 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.041
      TPR_14   4 llalaeallalGdpdeAi 21 
                 ++ la+a+++lG+ ++A 
  EGE24999.1 367 QYWLARAYEQLGQQAKAQ 384
                 4789*********99996 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.41   8.2e+02      26      53 ..      97     124 ..      80     132 .. 0.81
   2 ?    8.6   1.4    0.0014       2.7       4      47 ..     333     386 ..     331     392 .. 0.66
   3 ?   -3.4   0.1       7.4   1.5e+04       2      14 ..     621     633 ..     620     635 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.41
      TPR_19  26 earllLAeallalgqldeAealLdalpe 53 
                  +++++Ae+   +g+++  +a+ d + +
  EGE24999.1  97 KLAADYAEIKARQGDYASVRAVADSIEN 124
                 6788999999999999998888888765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0014
      TPR_19   4 egdyaeAlalleq.........alqe.dpknaearllLAeallalgqldeAeal 47 
                 ++dya+A+ ++ q         a+++ + +    +++LA+a+ +lgq ++A+ +
  EGE24999.1 333 AEDYAQAAIYFGQwsdvitaisAMTAvEQQERIWQYWLARAYEQLGQQAKAQHI 386
                 567777766666655544444433441444444556**************9866 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 7.4
      TPR_19   2 laegdyaeAlall 14 
                 + + +y eA+a+ 
  EGE24999.1 621 ISADQYVEAIAYA 633
                 5567888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 5200.43
//
Query:       EGE25000.1  [L=328]
Description: malate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-37  129.1   0.3    2.4e-37  128.1   0.1    1.6  2  Ldh_1_N       lactate/malate dehydrogenase, NAD binding domai
    4.9e-34  117.7   0.0    1.2e-33  116.4   0.0    1.6  2  Ldh_1_C       lactate/malate dehydrogenase, alpha/beta C-term
  ------ inclusion threshold ------
      0.025   14.3   0.0      0.046   13.5   0.0    1.4  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.1   4.1e-41   2.4e-37       1     140 [.       5     154 ..       5     155 .. 0.96
   2 ?   -3.4   0.0       1.5   9.2e+03      24      48 ..     294     318 ..     288     322 .. 0.75

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 4.1e-41
                 EEEEEETTTSHHHHHHHHHHHHT.TSSSE....EEEE-SSHH....HHHHHHHHHHHCHCCSTS-EEEEESSGGGGTTESEEEE--S-SS-TTTTHHHH CS
     Ldh_1_N   1 vkvavvGaaGgiGqslalllank.klade....laLlDiake....kleGvaldlshistflsvkvkvsekeeealkdadvvvitagvprkpGetRddL 90 
                 v+vav+GaaG+iG+sl++ +a++ +l+++    l+Ll+i+ e    +l+Gv+++l +++++l+v+v+ +++++ a+kdad+++++++ pr pG++R+dL
  EGE25000.1   5 VRVAVTGAAGQIGYSLLFRIASGeMLGKDqpviLQLLEIPVEkaqqALQGVIMELDDCAFPLLVDVIGTDDPKVAFKDADYALLVGARPRGPGMERADL 103
                 58*********************899999********99766566699*************************************************** PP

                 HHHHHHHHHHHHHHHHHHT.TTSEEEE-SSSHHHHHHHHHHHHTS-GGGEE CS
     Ldh_1_N  91 lkvNakIvkeiveaiakva.pnaivlvvsNPvdiltevlkkasglpkkrvi 140
                 l+ NakI++ +++a+++va ++++vlvv+NP++++++++ k ++  +++++
  EGE25000.1 104 LQENAKIFTVQGKALNEVAsRDVKVLVVGNPANTNAYIAMKSAPDLPAKNF 154
                 *******************99**********************99999987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.5
                 TSSSEEEEE-SSHHHHHHHHHHHHH CS
     Ldh_1_N  24 kladelaLlDiakekleGvaldlsh 48 
                 +++++l++ D+ +e+++    +l++
  EGE25000.1 294 QIVQDLQIDDFSQERINITLNELEE 318
                 6788899999988888777777665 PP

>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.68   4.1e+03      16      32 ..     119     135 ..     111     145 .. 0.77
   2 !  116.4   0.0     2e-37   1.2e-33       2     160 ..     159     320 ..     158     326 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.68
                 HTS-GGGEE--EEBSSS CS
     Ldh_1_C  16 agvtprsvkvtViGgHs 32 
                  +v+ r+vkv V+G+ +
  EGE25000.1 119 NEVASRDVKVLVVGNPA 135
                 46788999999999865 PP

  == domain 2  score: 116.4 bits;  conditional E-value: 2e-37
                 HHHHHHHHHHHHHHHTS.-GGGEE--EEBSSST........ETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHH CS
     Ldh_1_C   2 tLDivRaktflaekagv.tprsvkvtViGgHsg........vtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfve 91 
                 +LD++Ra t++a+k+g+  ++ +k +V+G+Hs          ti +    vke +++++++ +++ ++v ++g+++++a+    s+++s+A+A++++++
  EGE25000.1 159 RLDHNRALTQVAKKTGKaVKDIKKLIVWGNHSPtmyadyrfATINGE--SVKEMINDQDWNANTFLPTVGKRGAAIIEARG--LSSAASAANAAIDHMR 253
                 7****************666677****************98777776..89999**************************6..**************** PP

                 HHHTTH.TEEEEEEEEEESCCCECCSSEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHH CS
     Ldh_1_C  92 allrdt.keilsagvyldgevglkdqeieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkei 160
                 ++  +  +e++++g+ +dg +g+++   ++f++Pv+ + nG +++++ l+++df++e+++++ +eL++e 
  EGE25000.1 254 DWALGSnGEWVTMGIPSDGSYGIPKG--IMFGFPVTTE-NGEYQIVQDLQIDDFSQERINITLNELEEER 320
                 **887769*****************8..*********9.***************************9986 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.7e-06     0.046      37     132 ..      40     136 ..      36     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.7e-06
                   HHT-EEEEEGGG.TTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTT.TTT.TTTTT-EEEEEESSCCCCTTCC--SEEEECT CS
  TPP_enzyme_M  37 klgiPvvttlmg.kgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttg.sep.efapeakiihididpaeigknyqvdlaivgd 129
                    l+iPv   +++ +gvi e +++ +   ++++g++  + a+++aD  l++Gar       g +     +++aki  ++ ++ +   ++ v++ +vg+
    EGE25000.1  40 LLEIPVEKAQQAlQGVIMELDDCAFPlLVDVIGTDDPKVAFKDADYALLVGARPRG---PGmERAdLLQENAKIFTVQGKALNEVASRDVKVLVVGN 133
                   6899**99999989*****999998889*************************744...34344425555559999988886666666688888888 PP

                   HHH CS
  TPP_enzyme_M 130 vke 132
                   +++
    EGE25000.1 134 PAN 136
                   775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 2788.37
//
Query:       EGE25001.1  [L=37]
Description: hypothetical protein EA1_06976 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 301.52
//
Query:       EGE25002.1  [L=81]
Description: hypothetical protein EA1_06981 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-28   97.5   2.2    4.4e-28   97.3   2.2    1.0  1  DUF2789        Protein of unknown function (DUF2789)
  ------ inclusion threshold ------
      0.034   13.8   0.7      0.038   13.7   0.7    1.2  1  OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal


Domain annotation for each model (and alignments):
>> DUF2789  Protein of unknown function (DUF2789)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   2.2   4.9e-32   4.4e-28       5      75 .]       6      75 ..       3      75 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 4.9e-32
                -THHHHHHHHHTS---HHHHHHHHHHS.---TTS-STT-TTS-HHHHHHHHHHHHS--TTHHHHHHHHHHH CS
     DUF2789  5 ehtlseLFeqLGLdsseeaieaFiakhkpleeevkladApfWseaQaafLkealeedadWaevvdqLnvlL 75
                e+t++eLF+qLGL+ss+ea+e+Fia+++ l+ee++l++ApfW+++Q+af++e++++da Wa+v d+Ln++L
  EGE25002.1  6 EYTMNELFAQLGLASSDEAVEKFIAENQ-LDEETNLKNAPFWNDSQRAFIQEEWKNDAVWAMVLDELNTRL 75
                689************************9.***************************************998 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.7   4.2e-06     0.038      80     115 ..      44      79 ..      25      81 .] 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.2e-06
  OxoGdeHyase_C  80 kYpnakelvWvQeEpkNqGawsfveprletvlkekk 115
                     + n ++  ++QeE kN   w +v ++l+t l+e++
     EGE25002.1  44 PFWNDSQRAFIQEEWKNDAVWAMVLDELNTRLHEEH 79 
                    566768899*********************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 653.09
//
Query:       EGE25483.1  [L=145]
Description: acetylglutamate kinase, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-20   72.6   1.3      4e-20   72.4   1.3    1.0  1  AA_kinase  Amino acid kinase family


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   1.3   2.2e-24     4e-20     123     240 ..       2     113 ..       1     114 [. 0.90

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.2e-24
                 TCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHH.CSSS.TTTHHH CS
   AA_kinase 123 vesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarllpeisvdeaee.saselatgGmk 220
                 v sv++e +  l++++++pv++ ++ +d++ + +++++D +a+ +A+ lgA++l++lt++ GV+d+ +      r+l+ +s+++++  +a++ ++gGm+
  EGE25483.1   2 VDSVNEEVVDILIASNFIPVIASLG-VDVNSDTYNINADLVASRVAKFLGAERLLLLTNIKGVLDKQG------RVLTHLSAKDIDHlIADGTISGGMI 93 
                 5688899999999**********85.******99********************************98......6667777777776777********* PP

                 HCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 221 vkhpaalaaarrggipvvIt 240
                 +k++ al+a+r+g + v I+
  EGE25483.1  94 PKIEGALEAIRSGLHSVTIV 113
                 *************9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1189.41
//
Query:       EGE25484.1  [L=239]
Description: rhomboid family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-23   82.0  19.9    4.2e-23   82.0  19.9    2.3  3  Rhomboid  Rhomboid family
  ------ inclusion threshold ------
       0.19   11.6   1.9       0.35   10.7   1.9    1.4  1  NADH_B2   NADH dehydrogenase 1 beta subcomplex subunit 2


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.51   4.6e+03     104     121 ..      14      31 ..       4      36 .. 0.56
   2 !   82.0  19.9   4.7e-27   4.2e-23       5     146 ..      56     199 ..      53     203 .. 0.92
   3 ?   -0.4   0.2      0.11     1e+03     132     147 ..     212     227 ..     204     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.51
                 ...CCCCCCCCCCHHHCT CS
    Rhomboid 104 llllllfillnlvlgllp 121
                 lll+l fi l +v  l++
  EGE25484.1  14 LLLILSFIGLAIVQLLMG 31 
                 455555555555555554 PP

  == domain 2  score: 82.0 bits;  conditional E-value: 4.7e-27
                 C-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S.........-EESSHHHHHHHHHHHHHHHHCCCCGS CS
    Rhomboid   5 gelwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaeses......plvGaSGaifgllgallvlvprnrkll 97 
                 ge wrll+s flH+g+lHllfN++a+++fG+ +e ++ s+ ++ll++l++++++ll  ++  ++        +++GaSG+i+gl ++l+ l + +   +
  EGE25484.1  56 GEPWRLLSSGFLHIGILHLLFNSFAMYYFGQVTEIIISSVHVGLLFILAVVGSNLLGNYLAWQAVFlgtplaISAGASGGIMGLGAFLFSLALLQAPIA 154
                 799*********************************************999988877776666533677799*************************99 PP

                 ----HC...CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHHHHC CS
    Rhomboid  98 rkliiallllllfillnlvlgllpraggvsnlAHlgGllaGlllgllll 146
                  kl ++  +l++++++nl++g+  ++  +++++H+gG l+G++lg++ +
  EGE25484.1 155 LKLNTK--TLGFVMAINLLMGFAVKE--IDHAGHIGGTLVGFTLGVVYR 199
                 99*999..**************9987..****************98765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHCC CS
    Rhomboid 132 lgGllaGlllgllllr 147
                 l+G+++G+++ + ++ 
  EGE25484.1 212 LTGAMMGMAMLFGVIW 227
                 5788888887776654 PP

>> NADH_B2  NADH dehydrogenase 1 beta subcomplex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.9   3.9e-05      0.35       6      38 ..     202     234 ..     198     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.9e-05
     NADH_B2   6 vsYRqafpqlskkqvigaevlsglmwfWilwhl 38 
                  sYRq +  +   + +g  +l g++w+W+ w++
  EGE25484.1 202 LSYRQYTNLILTGAMMGMAMLFGVIWYWLHWQI 234
                 68999888888888889999***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1782.49
//
Query:       EGE25485.1  [L=280]
Description: ion transport protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-25   90.4  19.7    1.3e-25   90.1  19.7    1.0  1  Ion_trans      Ion transport protein
    3.6e-15   55.7   5.1    3.6e-15   55.7   5.1    2.8  3  Ion_trans_2    Ion channel
    0.00077   19.4   0.3     0.0012   18.8   0.3    1.2  1  DZR            Double zinc ribbon
     0.0017   17.7   3.5     0.0026   17.1   3.5    1.3  1  zf-ribbon_3    zinc-ribbon domain
     0.0078   15.9   6.6      0.053   13.2   6.6    2.0  1  zinc_ribbon_2  zinc-ribbon domain
  ------ inclusion threshold ------
      0.015   14.6   0.7      0.015   14.6   0.7    2.0  2  AmpE           Regulatory signalling modulator protein AmpE
       0.12   12.3   2.1        1.1    9.3   0.1    2.3  2  CLIP1_ZNF      CLIP1 zinc knuckle
       0.15   11.8   0.2       0.15   11.8   0.2    2.4  3  zf-HYPF        HypF finger
       0.18   12.0   1.8       0.34   11.1   1.8    1.4  1  NOB1_Zn_bind   Nin one binding (NOB1) Zn-ribbon like
       0.29   11.0   5.8       0.52   10.2   5.8    1.3  1  zf-CCHC_6      Zinc knuckle
       0.47   10.5   2.5       0.83    9.7   2.5    1.4  1  ADK_lid        Adenylate kinase, active site lid
       0.91    9.7   4.8        6.8    6.9   4.8    2.0  1  UPF0547        Uncharacterised protein family UPF0547


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1  19.7   8.4e-29   1.3e-25       2     237 ..      33     243 ..      32     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 8.4e-29
                 HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
   Ion_trans   2 svfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllslvlse.esllllsvl 98 
                 ++f+++il+ i++++++++l++    ++l    +++++e++ft++ft+e +l+++++++   +rY++++   +D+l++lp++lsl+      ll++++l
  EGE25485.1  33 KLFDVLILVAIITSVLVVMLDSV-LFLRLQYgRLFFVAEWFFTILFTIEYALRLYSAPN--LRRYVTSFYGAVDLLALLPTYLSLFFAGtHYLLVVRIL 128
                 589*****************443.44344445*************************99..899*********************444446799***** PP

                 HHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHH CS
   Ion_trans  99 rlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgd 197
                 r++r++r+++l s+++    l +a++ s  ++  ++l ll+++ if+++ + +                +p+   + F++++ +++w+++++tt+g+gd
  EGE25485.1 129 RILRIFRVFRLKSYMQQAGFLAAAFKTSQHKITVFFLSLLLLVTIFGSVLYVVE---------------GPE---NGFTSIPLSIYWAVVTLTTVGYGD 209
                 **************************************************9999...............454...44777******************* PP

                 HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 198 ilyatldekskvaliyfvifiilgsflllNlliaviadnf 237
                 i ++t  ++        ++++++ ++ +++++ ++ +  +
  EGE25485.1 210 ISPKTPLGQ------AIASMVMITGYAIIAVPTGIFTAEL 243
                 *********......99*************9999988765 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.49   7.3e+02      48      74 ..      29      57 ..      27      62 .. 0.55
   2 ?   -0.2   5.6      0.66   9.8e+02       4      63 ..      48     104 ..      37     117 .. 0.64
   3 !   55.7   5.1   2.4e-18   3.6e-15       2      76 ..     167     242 ..     166     245 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.49
                 -----HHH..HHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2 48 tdagrlft..ivyillGlalfalflavlg 74
                 t+ag+lf   i+++++  +l++++ +vl+
   EGE25485.1 29 TPAGKLFDvlILVAIITSVLVVMLDSVLF 57
                 55666664225555555556666555554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.66
                  HHTCHHHHHHHHT....T---HHHHHHHHHHHHTTS----SSTT.-----HHHHHHHHHHH CS
  Ion_trans_2   4 llvlifgaviysleegwekwsfldalYfsfvtltTiGYGdivpe.tdagrlftivyillGl 63 
                  l+v++ ++++  l+    +  f+ a +f f+ l+Ti Y       +++ r++t +y+ + l
   EGE25485.1  48 LVVMLDSVLFLRLQY---GRLFFVAEWF-FTILFTIEYALRLYSaPNLRRYVTSFYGAVDL 104
                  444444444444433...3367777777.88899999986544447777888888877655 PP

  == domain 3  score: 55.7 bits;  conditional E-value: 2.4e-18
                  HHHHTCHHHHHHHHT.......T---HHHHHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   2 vlllvlifgaviysl...eegwekwsfldalYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkv 76 
                  +lllv ifg+v+y +   e+g    s+  ++Y+++vtltT+GYGdi+p+t++g++++ +++++G+a++a+ + +++  
   EGE25485.1 167 LLLLVTIFGSVLYVVegpENGF--TSIPLSIYWAVVTLTTVGYGDISPKTPLGQAIASMVMITGYAIIAVPTGIFTAE 242
                  6899999*******96655542..48888****************************************998888765 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.3   8.3e-07    0.0012      25      49 .]     250     275 ..     232     278 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.3e-07
         DZR  25 vaaedrCpsCgek.vdpearfCpeCG 49 
                 + +++ Cp+Cg+     +a+fC+ CG
  EGE25485.1 250 QLQPISCPNCGKFgHATNAKFCDRCG 275
                 44489999999998889999999998 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   3.5   1.8e-06    0.0026       3      26 .]     254     278 ..     252     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.8e-06
  zf-ribbon_3   3 vrCPnCGap.lssddnvCpyCGtkl 26 
                  ++CPnCG+   ++ +++C  CG++l
   EGE25485.1 254 ISCPNCGKFgHATNAKFCDRCGHDL 278
                  69******558************97 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   6.6   3.6e-05     0.053       2      23 .]     256     278 ..     255     278 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
  zinc_ribbon_2   2 CpnCGael.qdnakFCpyCGtpl 23 
                    CpnCG+     nakFC +CG+ l
     EGE25485.1 256 CPNCGKFGhATNAKFCDRCGHDL 278
                    *****966379**********86 PP

>> AmpE  Regulatory signalling modulator protein AmpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5      0.48   7.1e+02      44      78 ..      44      78 ..      20     107 .. 0.65
   2 ?   14.6   0.7     1e-05     0.015       5      87 ..     126     210 ..     122     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.48
        AmpE 44 llltivamvvvlailrllqgllfglpllllwillg 78
                ++ ++v+m+  ++ lrl  g lf ++   + il +
  EGE25485.1 44 ITSVLVVMLDSVLFLRLQYGRLFFVAEWFFTILFT 78
                33344444444556666667777666655555544 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1e-05
        AmpE   5 tlllvlaverlfklgehwqldhrlevvfrrvkeas..lvktllltivamvvvlailrllqgllfglpllllwillgllcigagkv 87 
                  +l +l + r+f+l  + q    l+ +f+  ++    ++ +lll ++ +  vl ++   ++ + ++pl + w +++l  +g g++
  EGE25485.1 126 RILRILRIFRVFRLKSYMQQAGFLAAAFKTSQHKItvFFLSLLLLVTIFGSVLYVVEGPENGFTSIPLSIYWAVVTLTTVGYGDI 210
                 567889999*******************9988864114556666777777788888888899*******************9987 PP

>> CLIP1_ZNF  CLIP1 zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00071       1.1       4      14 ..     256     266 ..     256     267 .. 0.87
   2 ?    2.6   0.2      0.09   1.3e+02       2       8 ..     269     275 ..     269     279 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00071
   CLIP1_ZNF   4 CdnCEvFGHdT 14 
                 C nC+ FGH T
  EGE25485.1 256 CPNCGKFGHAT 266
                 669******99 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.09
   CLIP1_ZNF   2 pYCdnCE 8  
                 ++Cd C+
  EGE25485.1 269 KFCDRCG 275
                 6899996 PP

>> zf-HYPF  HypF finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.5   3.7e+03       9      17 ..      86      94 ..      84      98 .. 0.79
   2 ?   11.8   0.2    0.0001      0.15      18      28 ..     250     260 ..     245     260 .. 0.88
   3 ?   -0.4   0.2      0.68     1e+03       2       9 ..     271     278 ..     270     279 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.5
                HC-TTSTTT CS
     zf-HYPF  9 ykdpldRRf 17
                y  p+ RR+
  EGE25485.1 86 YSAPNLRRY 94
                677888999 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0001
                 T-TT---TTTS CS
     zf-HYPF  18 haqfisCtnCG 28 
                 + q+isC+nCG
  EGE25485.1 250 QLQPISCPNCG 260
                 569*******9 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.68
                 -HHHHHHH CS
     zf-HYPF   2 CedClrEy 9  
                 C++C +++
  EGE25485.1 271 CDRCGHDL 278
                 88887665 PP

>> NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.8   0.00023      0.34      10      32 ..     255     277 ..     251     278 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
  NOB1_Zn_bind  10 rChaCfkvtkdmtkkFCpkCGnk 32 
                    C  C k+ + ++ kFC++CG++
    EGE25485.1 255 SCPNCGKFGHATNAKFCDRCGHD 277
                   699******************85 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.8   0.00035      0.52       4      19 ..     256     271 ..     254     275 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00035
   zf-CCHC_6   4 CknCGAFGHtarSkrC 19 
                 C nCG FGH +  k+C
  EGE25485.1 256 CPNCGKFGHATNAKFC 271
                 ***************9 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.5   0.00055      0.83       3      31 ..     255     278 ..     254     280 .] 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00055
                 E-TTT--EEETTTB--SSTTB-TTT--.- CS
     ADK_lid   3 vCpkCGrsYhvvfnpPkveglCDkCGepL 31 
                  Cp+CG+  h ++    +  +CD CG +L
  EGE25485.1 255 SCPNCGKFGH-AT----NAKFCDRCGHDL 278
                 6*********.44....9********998 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.8    0.0045       6.8       3      22 ..     256     276 ..     255     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0045
     UPF0547   3 CPeCeak.vPvaaqfCphCGy 22 
                 CP C  +  +++a+fC  CG+
  EGE25485.1 256 CPNCGKFgHATNAKFCDRCGH 276
                 78887773489*****99**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1985.56
//
Query:       EGE25486.1  [L=181]
Description: NADPH-dependent FMN reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-28   98.7   0.0    3.4e-28   98.3   0.0    1.1  1  FMN_red         NADPH-dependent FMN reductase
    3.9e-05   23.4   0.0    5.5e-05   23.0   0.0    1.2  1  Flavodoxin_2    Flavodoxin-like fold
     0.0024   18.1   0.0     0.0052   17.0   0.0    1.6  1  preATP-grasp_3  pre ATP-grasp 3 domain


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   5.7e-32   3.4e-28       3     147 ..       5     142 ..       3     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 5.7e-32
                 EEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS.--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-. CS
     FMN_red   3 ilvisGSlrkgsntrklaewaaealkeagaevelidladlilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKnalDrlsrt 101
                 ++v++GS+++ s +r + +++++ ++ + ++++++++ad  lp  l+d dl+  +q+ ++ ++++e i+aada+++++Pe+ng+ s+ +Kna+D +sr+
  EGE25486.1   5 VAVLIGSASQTSVNRLAFNYLESVAPSS-LQFKVVEIAD--LP--LYDRDLD--EQDVPAYNRFREEIKAADAVLWISPEHNGGCSAMIKNAIDIASRP 96 
                 899**********************995.**********..8*..******6..5899***************************************** PP

                 SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHHH..TT-EEEECSE CS
     FMN_red 102 rgkkelrgKpvalvavgggrrgglraeeqlrqvlae..lgaivvpraa 147
                  g+  +++Kp++l++v   ++g++r++ qlr ++++  l++ ++p +a
  EGE25486.1  97 IGQSVWTNKPLGLISVN--ANGSSRVTDQLRTIATNpaLNMPTLPFGA 142
                 **************887..58**************6568888877654 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   9.2e-09   5.5e-05       3     101 ..       5      91 ..       3     105 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 9.2e-09
                   EEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCCHHHHTTCHHHHHHH.HHHHHCSSEEEEEEE-BTTB--HHHHH CS
  Flavodoxin_2   3 iLiinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaaklayeekpadveseq.iekllaadaivlqfPlwwfgvPailKg 98 
                   + ++ ++  +  s  ++la  ++e+++ ++  +++v++++++  p  ++ dl      e+     + ++  e+++aada+++++P ++ g++a+ K+
    EGE25486.1   5 VAVLIGSASQ-TSV-NRLAFNYLESVAPSS-LQFKVVEIADL--PLYDR-DLD-----EQ--DVPAYNRfREEIKAADAVLWISPEHNGGCSAMIKN 88 
                   5566677766.466.666666666666666.78999999995..55554.222.....22..22233334489***********************9 PP

                   HHH CS
  Flavodoxin_2  99 wiD 101
                    iD
    EGE25486.1  89 AID 91 
                   999 PP

>> preATP-grasp_3  pre ATP-grasp 3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.7e-07    0.0052      32      58 ..      59      85 ..      47     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.7e-07
  preATP-grasp_3 32 etfrrlaaeaDaVlvIAPEtdgiLarl 58
                    ++fr+ +++aDaVl I PE++g  + +
      EGE25486.1 59 NRFREEIKAADAVLWISPEHNGGCSAM 85
                    79*******************976666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1447.38
//
Query:       EGE25487.1  [L=303]
Description: hypothetical protein EA1_06123 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-10   39.1   0.5    1.3e-09   38.0   0.5    1.6  1  DUF4377   Domain of unknown function (DUF4377)
    6.5e-09   35.7   0.0    1.2e-08   34.9   0.0    1.4  1  META      META domain
  ------ inclusion threshold ------
       0.14   12.1   0.1       0.32   10.9   0.1    1.5  1  DUF3746   Protein of unknown function (DUF3746)


Domain annotation for each model (and alignments):
>> DUF4377  Domain of unknown function (DUF4377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.5   2.1e-13   1.3e-09       1      57 [.     212     279 ..     212     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2.1e-13
     DUF4377   1 tVasekvecs.gvgpaq.clqvkeesy.........geWeefygqIeGftyekgyeyvLkVkrtelan 57 
                 +++++k++c  + g++q cl+v++ +y         g W++fygqI G++++++ ++ ++++ ++ ++
  EGE25487.1 212 EIEPNKINCIdEIGQEQrCLKVRNVTYneqgiktgsGAWRTFYGQIHGYEHQPNLRQIIRLNAYNNPD 279
                 6899******98888888********************************************998744 PP

>> META  META domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   1.9e-12   1.2e-08       4     107 ..      73     192 ..      70     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.9e-12
                 TTTEEEEEE..EECSSCS-BTT---......EEEECCCEEEEE-SSSEEEEEEEECTTEEEESSEEE-----......SCHHHHCHHHHHHCCCH.-CE CS
        META   4 lagteWelt..svdgkavaasapat......ltfaedgrvsgsagCNrfsGsytleggrltlgalasTrmaC......spalmelEqallkaLqa.vts 87 
                 l+  +W+l   +v+g+++ + ++        l f ++  ++ + gCN+ s +y+l++g l+++   sT maC      sp+l+++E+++ + L++   +
  EGE25487.1  73 LKAYNWTLIsaEVQGAPIHSYENIIknragsLSF-SNRGLYFNVGCNHHSQHYQLSEGVLSIHHRTSTLMAChhsdshSPDLAQVESKFAQDLNGsNLQ 170
                 7788999997778899988888887999999***.777899*******************************65443337899***********97888 PP

                 EEE-SS..EEEEE-TTS.-EEE CS
        META  88 yriegd..rLtLtdadgeellt 107
                 ++  +d  + tL  ++g+++lt
  EGE25487.1 171 IKTGPDeyTATLLLQKGAQVLT 192
                 8888888855555556655665 PP

>> DUF3746  Protein of unknown function (DUF3746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   5.4e-05      0.32      14      34 ..      50      70 ..      48      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.4e-05
     DUF3746 14 skKktCkKhifdNstyTTrtg 34
                ++K t k ++f Nsty T t+
  EGE25487.1 50 TLKQTAKLNAFENSTYQTATD 70
                6899*************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2447.09
//
Query:       EGE25488.1  [L=159]
Description: 50S ribosomal protein L9 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-25   87.3   0.1    1.1e-24   86.7   0.1    1.3  1  Ribosomal_L9_C  Ribosomal protein L9, C-terminal domain
    1.1e-22   79.3   0.4    1.9e-22   78.5   0.4    1.4  1  Ribosomal_L9_N  Ribosomal protein L9, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L9_C  Ribosomal protein L9, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.1   1.2e-28   1.1e-24       2      84 ..      64     145 ..      63     147 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 1.2e-28
                     HHHHHHHHHSS..-EEEE--B-TT-BBSS---HHHHHHHHHHHT-----GGGEE-TTT.-SBSSEEEEEEESSSS-EEEEEEEE CS
  Ribosomal_L9_C   2 eaealaekLeakvkvtikakagedgklFGsVtakdIaealkkklgieidkkkieleep.iktlGeyevtvkLhkevtakikveV 84 
                     +a+a+ae+L+ +v+v + ak+g++gklFGs++a+dIa+al+k  g+e+d+++++++e   +++Gey+vt++Lh++++++i v++
      EGE25488.1  64 AANARAEALA-DVNVIMRAKSGDEGKLFGSIGARDIADALTKS-GLEVDRSEVKMPEGaFRQIGEYKVTIQLHHDISTDILVTI 145
                     79********.8999***************************9.*************55*********************9998 PP

>> Ribosomal_L9_N  Ribosomal protein L9, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.4   2.1e-26   1.9e-22       1      47 []       1      47 [.       1      47 [. 0.98

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 2.1e-26
                    -EEEESSCBTTTBSSS-EEE--HHHHHHTTTTTTSEEE-SHHHHHHH CS
  Ribosomal_L9_N  1 MkVILlkdVkglGkkGdvveVkdGyaRNyLipqglAvyAtpenlkel 47
                    M+VILl+ V +lGk G+ v+Vk+Gy+RNyLipqg+A++At++nl+++
      EGE25488.1  1 MQVILLQRVVNLGKLGETVDVKAGYGRNYLIPQGKALPATEANLAKF 47
                    9*******************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1213.52
//
Query:       EGE25489.1  [L=75]
Description: 30S ribosomal protein S18 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-26   90.0   0.3    1.1e-25   89.6   0.3    1.2  1  Ribosomal_S18  Ribosomal protein S18


Domain annotation for each model (and alignments):
>> Ribosomal_S18  Ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.3     6e-30   1.1e-25       2      52 .]      18      68 ..      17      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 6e-30
  Ribosomal_S18  2 kekidYkdvelLsqFiterGkIlprriTGlcakhQrklakaIkrARhlaLL 52
                   +++idYkdvelL+q+i+e+GkI p+riTG++ k+Qr+la aIk+AR+laLL
     EGE25489.1 18 ITHIDYKDVELLKQYISENGKITPSRITGTSTKYQRQLAVAIKQARYLALL 68
                   689***********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 625.55
//
Query:       EGE25490.1  [L=133]
Description: 30S ribosomal protein S6 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-26   92.2   0.1    2.5e-26   91.8   0.1    1.2  1  Ribosomal_S6  Ribosomal protein S6


Domain annotation for each model (and alignments):
>> Ribosomal_S6  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.1   1.4e-30   2.5e-26       1      90 []       3      91 ..       3      91 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1.4e-30
                  EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEESCCHHHHHHHHHHCSTTEEEEEEEE CS
  Ribosomal_S6  1 kYElvfilrpelseeevkelvekvgklilenggvvrkveswGkrkLaypikkkteGyyvlmnfdaspevikelertlrldervlRylivk 90
                  +YE+v++++p+ s+ +v+++v+k+++++++ngg+ +++e+wG+r+Laypi+k ++++yvl+n++++ e++++le+ ++ ++ ++R+li++
    EGE25490.1  3 HYEVVLLVHPDQSN-QVADMVTKYRSIVEDNGGNNHRLEDWGRRQLAYPINKIHKAHYVLLNIECNDETLAQLEELFKYNDAIIRSLIIR 91
                  7**********986.*************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1153.36
//
Query:       EGE25491.1  [L=161]
Description: hypothetical protein EA1_06143 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.2   0.3       0.16   12.2   0.3    2.2  2  HemY_N    HemY protein N-terminus


Domain annotation for each model (and alignments):
>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   2.1     0.036   6.5e+02      16      37 ..      37      58 ..      32      75 .. 0.70
   2 ?   12.2   0.3   9.1e-06      0.16       9      60 ..     102     153 ..      96     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.036
      HemY_N 16 lvvavlllvllfvllylllrll 37
                ++v v+   l+++l+++++rl+
  EGE25491.1 37 FIVYVVCCGLVLLLWLVVMRLI 58
                5556666666666666666665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 9.1e-06
      HemY_N   9 gyrietslvvavlllvllfvllylllrllrlllrlparvrrwrrrrrerkar 60 
                 +    +   v +++++++++++ ++++++r++l + a  ++w r+ +++k +
  EGE25491.1 102 DFSAALGAAVPIFAILAALLVVGAAWQMVRGVLVANAEKQAWVRQVQKQKQQ 153
                 5566677788899**********************99999997777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1201  (0.0669864); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1216.09
//
Query:       EGE25492.1  [L=106]
Description: hypothetical protein EA1_06148 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-27   93.3   0.0    1.1e-26   92.9   0.0    1.1  1  YcgL             YcgL domain
  ------ inclusion threshold ------
        0.1   12.9   0.1       0.16   12.3   0.1    1.3  1  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm


Domain annotation for each model (and alignments):
>> YcgL  YcgL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   1.2e-30   1.1e-26       1      73 []       3      85 ..       3      85 .. 1.00

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 1.2e-30
        YcgL  1 caiYksskkeetYLYvek..........kddfsevPeeLlesfGkpefvmeleLskerkLaradaekVlaaLeeqGfylqlpp 73
                c++Yk++k++++Y+Y+++          kd+++++P+++++++G  +f+m+l+Ls+++kLa+ad+++V+a+L+eqG+y+q pp
  EGE25492.1  3 CDVYKFPKNKGWYVYIARpdypndtenlKDWLGVLPAAMRTKLGFGQFIMHLDLSSRQKLAQADIHQVKARLNEQGYYVQAPP 85
                9*********************************************************************************9 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.7e-05      0.16      14      39 ..      61      86 ..      56     104 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
  Val_tRNA-synt_C 14 aklekeiervqkKLanpgFveKAPae 39
                     + ++++i +v+ +L+ +g+   AP  
       EGE25492.1 61 KLAQADIHQVKARLNEQGYYVQAPPS 86
                     5689*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 785.69
//
Query:       EGE25493.1  [L=31]
Description: hypothetical protein EA1_06153 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                       95  (0.00529868); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 240.64
//
Query:       EGE25494.1  [L=366]
Description: glycine cleavage system aminomethyltransferase T [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-78  264.0   0.1    1.7e-78  263.5   0.1    1.2  1  GCV_T         Aminomethyltransferase folate-binding domain
    5.2e-13   48.7   0.0      2e-12   46.8   0.1    1.9  2  GCV_T_C       Glycine cleavage T-protein C-terminal barrel do
  ------ inclusion threshold ------
      0.023   14.2   0.0      0.042   13.3   0.0    1.4  1  Uroplakin_II  Uroplakin II
      0.026   14.9   0.0      0.045   14.1   0.0    1.4  1  POPLD         POPLD (NUC188) domain
       0.11   12.6   0.0       0.32   11.2   0.0    1.7  1  SoxG          Sarcosine oxidase, gamma subunit family


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.5   0.1   4.8e-82   1.7e-78       1     257 []       9     258 ..       9     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 263.5 bits;  conditional E-value: 4.8e-82
       GCV_T   1 lydrhkalgakfvefagwemPvqYasesikaehlavreaaglfDvShmgkievsGpdaaalLqrlltndisklkp.gkatytlllnedGgvidDlivar 98 
                 l+d h +++ k+v+f+gwe+Pv+Y  +s ++eh+avr++ag+fDvShm   ++ G++a+a+Lq+ll+nd++kl   gka y+++ln+dGgvidDliv+r
  EGE25494.1   9 LFDAHTEHNGKLVDFGGWELPVNY--GSQIDEHHAVRTDAGMFDVSHMLVTDINGDNAKAFLQKLLANDVAKLGFvGKALYSAMLNDDGGVIDDLIVYR 105
                 789*********************..***********************************************977*********************** PP

       GCV_T  99 lded..efllvvnaankekdlawlekaaekkdldvevedvteelallalqGPkarevlskllgadlselkffsfaevelaggkkvlvsRtgytGedGfe 195
                 ++ed   +++++n+a++ekd a++ k    +++ v+++    ++a+la+qGP+a   l ++ +   +++ + + +      g++ +v+ tgytGedG+e
  EGE25494.1 106 MNEDesAYRIISNGATREKDSAHFAKVG--GAFGVTLTP-RHDVAMLAIQGPNAITKLLAVKPEWTDKVNALKPFVGVDL-GDDWFVAYTGYTGEDGVE 200
                 **87679*******************44..6********.5569**************9999777777777777644444.8***************** PP

       GCV_T 196 iyipaeeaeelweaLleagkeegvkpaGlgArdtlRlEaglrlyghdldeettPleaglgwa 257
                 +++pa+ea+ ++++L+    ++gv p+GlgArdtlR+Eag++lyg+d++++++Pleag++w+
  EGE25494.1 201 VVMPADEATGFFDELI----KAGVAPCGLGARDTLRMEAGMNLYGNDMTDDVSPLEAGMAWT 258
                 ***************4....6778************************************95 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.97   3.5e+03      24      41 ..      75      92 ..      57      94 .. 0.79
   2 !   46.8   0.1   5.7e-16     2e-12       2      79 ..     285     358 ..     285     359 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.97
     GCV_T_C 24 dgevvGhvTSgaysptlg 41
                d +++G+v  + ys+ l+
  EGE25494.1 75 DVAKLGFVGKALYSAMLN 92
                557899999999999886 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 5.7e-16
     GCV_T_C   2 rlvglelddgapllrggepilrdgevvGhvTSgaysptlgksialAyvkaelaklgtevevevrgkrvpaevvkkpfy 79 
                 r vgl+l +g  +lr g++++  ++  G +TSg +sptl++sia+A v+a +   g++ +v +rgk+++++v+k pf+
  EGE25494.1 285 RQVGLLLAKG-GVLRAGMEVI-TEDGFGITTSGVFSPTLNQSIAIARVPASFT--GEHAKVIMRGKEMDVRVLKLPFV 358
                 679****977.6888888888.45559**********************9995..79********************6 PP

>> Uroplakin_II  Uroplakin II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.042      22      70 ..     309     357 ..     289     362 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
  Uroplakin_II  22 fnisslsgllspalaesllvalppchltggkasltvrrv.neskvvksdf 70 
                   f i + sg++sp+l +s+ +a  p  +tg +a +++r    + +v+k  f
    EGE25494.1 309 FGI-TTSGVFSPTLNQSIAIARVPASFTGEHAKVIMRGKeMDVRVLKLPF 357
                   444.469*************************999985414666666555 PP

>> POPLD  POPLD (NUC188) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05     0.045       2      63 ..     199     264 ..     198     268 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
       POPLD   2 wdlilPwgwglpfwlsLvrvgvrvgGlrerrqlalesgkpyfPddypdt....kagekeekeeeee 63 
                 + +++P+  ++ f+  L++ gv + Gl  r +l +e+g+  + +d+ d     +ag+++    ++e
  EGE25494.1 199 VEVVMPADEATGFFDELIKAGVAPCGLGARDTLRMEAGMNLYGNDMTDDvsplEAGMAWTVDLKDE 264
                 6799**************************************999998877777777776665555 PP

>> SoxG  Sarcosine oxidase, gamma subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.8e-05      0.32      59     110 ..      41      90 ..      28      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.8e-05
        SoxG  59 alaelasvvdlShgrvlisisGakaeavlakltaiDlsadaFpvGaaaatil 110
                 a+   a + d+Sh  v   i+G +a+a l+kl a D++   F vG+a  +++
  EGE25494.1  41 AVRTDAGMFDVSHMLV-TDINGDNAKAFLQKLLANDVAKLGF-VGKALYSAM 90 
                 55556778899*9876.59*******************9999.899987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2706.52
//
Query:       EGE25495.1  [L=39]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 295.13
//
Query:       EGE25496.1  [L=126]
Description: glycine cleavage system protein H [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-48  162.5   0.2    3.8e-48  162.4   0.2    1.0  1  GCV_H          Glycine cleavage H-protein
    3.8e-05   23.4   0.5    6.3e-05   22.7   0.5    1.3  1  Biotin_lipoyl  Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.028   14.4   0.1      0.041   13.8   0.1    1.2  1  RnfC_N         RnfC Barrel sandwich hybrid domain


Domain annotation for each model (and alignments):
>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.4   0.2   6.4e-52   3.8e-48       1     117 [.       8     124 ..       8     126 .] 0.98

  Alignments for each domain:
  == domain 1  score: 162.4 bits;  conditional E-value: 6.4e-52
                 -EE-TTSEEEEEETT.EEEEEE-HHHHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-GGGTT-TTHHHH-TTTTT--EEEE CS
       GCV_H   1 lyytkehewvkveedgvatvGitdfaqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvevNekleeepeliNkdpyeegWliklk 99 
                 l+y+ +hew+k e+dg++tvGitd+aq+ lgdvvfvelpevg +v+++e++a+vEsvKaas+vyap+ Ge+ve+N++l ++pel N+dpy+++W +k+k
  EGE25496.1   8 LKYVASHEWLKLEDDGIITVGITDHAQDLLGDVVFVELPEVGREVSADEEIAVVESVKAASDVYAPIAGEIVEINDELVDSPELANEDPYGKAWFFKIK 106
                 69************************************************************************************************* PP

                 ES-GGGGGGSEEHHHHHH CS
       GCV_H 100 lsnleeleeLlsaeeyek 117
                 ++n+ + ++Llsaeey+ 
  EGE25496.1 107 PANVADYDDLLSAEEYQS 124
                 ****************86 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.5     1e-08   6.3e-05      22      57 ..      47      82 ..      38      89 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1e-08
                   STTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEES CS
  Biotin_lipoyl 22 kvGdkVkagqvlaeveamKmemeieapkaGvvkeil 57
                   +vG +V+a++ +a+ve+ K+  ++ ap aG ++ei 
     EGE25496.1 47 EVGREVSADEEIAVVESVKAASDVYAPIAGEIVEIN 82
                   79********************************96 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   6.8e-06     0.041      47      88 ..      47      89 ..      40      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.8e-06
      RnfC_N 47 kvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahg 88
                +vg +V   + ia  e+   ++ v+a+++G++++i++ lv ++
  EGE25496.1 47 EVGREVSADEEIAVVESvKAASDVYAPIAGEIVEINDELVDSP 89
                68999********9999555789************99888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1000.82
//
Query:       EGE25497.1  [L=29]
Description: hypothetical protein EA1_06173 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (29 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 243.22
//
Query:       EGE25498.1  [L=950]
Description: glycine dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.4e-183  607.9   0.1   9.3e-172  571.7   0.1    3.0  3  GDC-P            Glycine cleavage system P-protein
    1.9e-06   27.4   0.5      4e-06   26.3   0.5    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
    2.5e-06   26.7   0.1    2.5e-06   26.7   0.1    1.9  2  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  571.7   0.1  1.5e-175  9.3e-172       1     430 []      17     440 ..      17     440 .. 0.98
   2 !   29.1   0.0   7.3e-11   4.4e-07      44     277 ..     469     716 ..     451     724 .. 0.78
   3 !    3.6   0.0    0.0041        25     331     428 ..     754     862 ..     746     864 .. 0.63

  Alignments for each domain:
  == domain 1  score: 571.7 bits;  conditional E-value: 1.5e-175
                 HHH-SS-HHHHHHHHHHHT-SSHHHHHHHHS-GGGB--S---------HHHHHHHHHHHHTTB---EE--BTTB------HHHHHHTTT-HHHHS--S- CS
       GDC-P   1 erhigpsekdqkemLetlGlkslddliekavPkeiklkkelkleapksEeellaelekiasknkvvksfiGaGyydtilPaviqrnilenpewytaYtP 99 
                 +rh+g+++++q+ +L+t+G+++ld+++++ vPk+++l+k+l l++++sE+++la+l+++a++ +v+ks+iG+Gy  t lPaviqrn+lenp+wytaYtP
  EGE25498.1  17 HRHLGKDANEQQALLQTVGFDDLDSFVDAVVPKAVRLNKDLDLPEAMSEHNALAKLRAMADNITVAKSYIGQGYSPTRLPAVIQRNVLENPGWYTAYTP 115
                 69************************************************************************************************* PP

                 SSGGG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHHHHHHHHHHH-SSS--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-...S- CS
       GDC-P 100 YqaEisqGrLeallnfqtlvadltGldianasllDegtAaaEAvllaaraskkkakkvvvdkkvhpqtlevlktrakglgieivevdlteekvtdkeke 198
                 YqaEi+qGrLeallnfq++ +dltG+d+a asllDe+tAaaEA+++a r+sk+k+++++vd++ +pqtl+v++trak++g+eiv+ d    +v+ k+ e
  EGE25498.1 116 YQAEIAQGRLEALLNFQQVCIDLTGMDLAGASLLDEATAAAEAMAMARRVSKSKSNAFFVDERTYPQTLDVIHTRAKYFGFEIVIGD---FDVA-KNGE 210
                 **************************************************************************************9...5555.4789 PP

                 EEEEEEEES-TTSB----HHHHHHHHHTT-EEEEEE-TTGGGTB--HHHHT-SEEEEE-TTTT---GGG----EEEEE-GGGGGG--S-EEEEEEBTTS CS
       GDC-P 199 vagvlvqypnteGriedlkelvekakkkkslvvvaadllaLtllkpPgelgaDivvGsaqrfGvPlgyGGPhagffAvkeklkRkiPGRlvGvskDaeg 297
                 ++g ++qy++ +G + dl++++ ++k++ +  +va+d+++L+llk+P+++gaDi++Gs+qrfG+P+g+GGPha++fA k+k kR+ PGR++GvskDa+g
  EGE25498.1 211 FFGAFFQYVGKDGDVVDLTDVITAVKDNGAYAIVASDIMSLVLLKSPADMGADIALGSTQRFGIPMGFGGPHAAYFAFKDKDKRSAPGRIIGVSKDAQG 309
                 *************************************************************************************************** PP

                 -EEEEEE-CCGSHHCCHHHCS-S--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T-EE--SSBSSEEEEE--TTTHHHHHHHHH CS
       GDC-P 298 kralrlalqtREqHirRdkAtsniCtaqaLlAnlaalyavyhGkeglkeiarrihkkteilakelkkkleeelkkkkffdtllieveekaaekvlkkae 396
                 ++alr+alqtREqHirR+kA+sniCt+q+LlAnla +yavyhG+ glk+ia rih+ + ++ak++k++ e +++++ ffdt+l+e++ +a+ ++ k a+
  EGE25498.1 310 NTALRMALQTREQHIRREKANSNICTSQVLLANLAGMYAVYHGAVGLKRIATRIHALAVAFAKAVKSS-ELAVRHDVFFDTVLVECGGQAQ-AIFKTAK 406
                 *****************************************************************995.******************9887.9****** PP

                 HTTEE-EEESTTEEEEE--TT--HHHHHHHHHHH CS
       GDC-P 397 keglnlrkvelktvgialdEtvtkedieallkvl 430
                 ++g+nl++++++ ++++  E + +++ ++l +++
  EGE25498.1 407 DKGYNLWQHDNGGISVSFHELTDEAEFDELCQIF 440
                 ******************************9987 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 7.3e-11
                 -----HHHHHHHHHHHHTTB--.-EE--BTTB------HHHHHHTTT-HHHHS--S-SSG.GG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHH CS
       GDC-P  44 eapksEeellaelekiasknkv.vksfiGaGyydtilPaviqrnilenpewytaYtPYqa.EisqGrLeallnfqtlvadltGldianasllDegtAaa 140
                 ++ ++E+++l+ l+++ +k+    +s+i  G   ++l a+ +   +   e+     P+ + E ++G ++ +   q+ +  +tG+d  + s+  ++ A++
  EGE25498.1 469 NSHHTEHQMLRYLKSLEDKDLAmNRSMISLGSCTMKLNATSEMLPITWDEFAN-VHPFAPsEDTKGYIQMIESLQAQLKAITGFD--EISMQPNSGASG 564
                 45589***************98789************9998886677777755.557765499********************99..689********* PP

                 H.HHHHHHHH-SSS.....--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-.............S-EEEEEEEES-TTSB---.-HHHHHH CS
       GDC-P 141 E.Avllaaraskkk.....akkvvvdkkvhpqtlevlktrakglgieivevdlteekvtd..........kekevagvlvqypnteGried.lkelvek 222
                 E A lla r  ++      ++  ++ ++ h  +       a+ +g+++v+v + +++  d          +++++ ++++ yp+t+G  e+ ++++ + 
  EGE25498.1 565 EyAGLLAIRRYHESmgqdeRNVCLIPRSAHGTN----PATAQMMGMKVVVVATDDNGNVDiddlkakcdeHSDKLGALMITYPSTHGVFEEgIRDICDM 659
                 944455555444331111133444444444444....3567888888888887777777777899988877888999***********99889****** PP

                 HHHTT-EEEE.EE-TTGGGTB--HHHHT-SEE.EEE-TTTT---GGG----EEEEE- CS
       GDC-P 223 akkkkslvvv.aadllaLtllkpPgelgaDiv.vGsaqrfGvPlgyGGPhagffAvk 277
                 ++ +   v +  a++ a + +  P+++gaD+  +   + f +P g GGP  g +  k
  EGE25498.1 660 IHTHGGQVYMdGANMNAQVGIMQPADVGADVLhMNLHKTFCIPHGGGGPGMGPIGLK 716
                 ****9999883567778888999*******983556789**********88866655 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0041
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT........T-EE--SSBSSEEEEE--T.TTHHHHHHHHHHTT...EE-EEESTTEEEEE--TT- CS
       GDC-P 331 laalyavyhGkeglkeiarrihkkteilakelkkkl.......eeelkkkkffdtllievee.kaaekvlkkaekeg...lnlrkvelktvgialdEtv 418
                 ++ +y+++ G++gl + +++ + +++++a++l ++        +  + ++   d+   + +   + + + k+ ++ g     +    ++t+ i  +E  
  EGE25498.1 754 ISWMYITMMGRDGLLSATKQALLNANYIATKLSEDYpvlytgkNGRVAHECIIDIRPLKAQTgISETDIAKRLMDYGfhaPTMSFPVAGTLMIEPTESE 852
                 6789****************************9874111111122344555555544444444555556666666552222233344556666666666 PP

                 -HHHHHHHHH CS
       GDC-P 419 tkedieallk 428
                  k++i+ l++
  EGE25498.1 853 SKAEIDRLIS 862
                 6666666665 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.5   6.7e-10     4e-06      34     206 ..     538     705 ..     529     706 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 6.7e-10
                      HHHHHHHHHHHTT-SEEEEES.-HHHHHHHHHHHH--TTEEEEEETT.........-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHH CS
  Beta_elim_lyase  34 vnrLedavaelfgkeaalfvp.qGtaAnsillkillqrgeevivtep.........ahihfdetgaiaelagvklrdlknkeaGkmdlekleaa 117
                      ++ L++++++++g++ +   p +G  ++   l + ++r++e + +++         a     ++ a a++ g+k++ + ++++G++d+++l+a+
       EGE25498.1 538 IESLQAQLKAITGFDEISMQPnSGASGEYAGLLA-IRRYHESMGQDErnvcliprsA---HGTNPATAQMMGMKVVVVATDDNGNVDIDDLKAK 627
                      678999999999*999988773466666555544.4577777666662444442223...3466788999************************ PP

                      S--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-E CS
  Beta_elim_lyase 118 ikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGg 206
                       +e   h++k +++++t          v  e +r + ++ + +g ++ +DgA  +na + + +++     ++D++ m l K  +++ Gg
       EGE25498.1 628 CDE---HSDKLGALMITYPSTH----GVFEEGIRDICDMIHTHGGQVYMDGAN-MNAQVGIMQPAD---VGADVLHMNLHKTFCIPHGG 705
                      ***...8899999999986664....4789**********************5.455544444433...47899999999999988886 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.5      0.13     8e+02     153     209 ..     223     279 ..     219     280 .. 0.75
   2 !   26.7   0.1   4.1e-10   2.5e-06      95     207 ..     591     704 ..     510     706 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.13
                  TEB--HHHHHHHHHHTT-EEEE..E-TTTTTTS---HHHHTESEEEEETTTTTSSTT-E CS
  Aminotran_5 153 Gtiqpveeigklakkkgalvlv..DaaqavghipidvkklgvDflafsghKllgPtGiG 209
                  G + ++ ++++++k++ga+ +v  D  + v       +++g+D++  s++ +  P G G
   EGE25498.1 223 GDVVDLTDVITAVKDNGAYAIVasDIMSLV--LLKSPADMGADIALGSTQRFGIPMGFG 279
                  778899999999999987766611444433..334567899*********999999976 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 4.1e-10
                  TTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH-...-TTEEEEEEESBETTTTE.B--HHHHHHHHHHTT-EEEEE-TTT.TTTS---H CS
  Aminotran_5  95 eaehhanlvpwqelakrtgakvkvipldeegeldldelekll...nektklvaithvsnvtGt.iqpveeigklakkkgalvlvDaaqa.vghipidv 187
                  ++ h  n     + a+  g+kv+v+  d++g++d+d+l+++    ++k  +++it  s+ +G+  + + +i+++++ +g  v +D+a + ++   ++ 
   EGE25498.1 591 RSAHGTNP----ATAQMMGMKVVVVATDDNGNVDIDDLKAKCdehSDKLGALMITYPST-HGVfEEGIRDICDMIHTHGGQVYMDGANMnAQVGIMQP 683
                  44444444....3345569*********************9954456777788887765.8996778********************86155566789 PP

                  HHHTESEEEEETTT.TTSSTT CS
  Aminotran_5 188 kklgvDflafsghK.llgPtG 207
                  +++g+D+l +  hK ++ P G
   EGE25498.1 684 ADVGADVLHMNLHKtFCIPHG 704
                  9*************999**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.40
# Mc/sec: 7210.59
//
Query:       EGE25499.1  [L=528]
Description: carbon starvation protein CstA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-45  153.4  22.6    7.8e-45  153.4  22.6    2.6  2  CstA      Carbon starvation protein CstA
      1e-19   71.0   4.4      1e-19   71.0   4.4    2.9  3  CstA_5TM  5TM C-terminal transporter carbon starvation CstA


Domain annotation for each model (and alignments):
>> CstA  Carbon starvation protein CstA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4  22.6   8.7e-49   7.8e-45       7     344 ..       4     327 ..       1     349 [. 0.77
   2 ?   -2.6   0.6      0.22   1.9e+03     156     183 ..     431     457 ..     360     483 .. 0.50

  Alignments for each domain:
  == domain 1  score: 153.4 bits;  conditional E-value: 8.7e-49
        CstA   7 vvvavvvfviayrfYgkfiakkvlklddkraTPaerledgkdyvptnklvlfghhFasiagagPlvGpvlAaqfGylPgllWilvGavfagavhDfvvl 105
                 +++ v++++++y +Ygk i+k ++ ++++++TPa +++dg+dyvp++k  ++  +   iag+gP+ Gp+l a +G + ++lWi++G++fagavhD++  
  EGE25499.1   4 FFFCVTILLVGYFIYGKVIEK-IFVINPNKNTPAYTMADGVDYVPMSKGKIWLIQLLNIAGTGPIFGPILGALYGPV-AMLWIVIGCIFAGAVHDYMCG 100
                 5678999**********9976.6****************************************************76.79******************* PP

        CstA 106 vasvrrkgkslgelakkelgkvakllallaillililvlavlalvvvkalaespaavfs.viltipialllGvllrklrkgvleasvigvvllllavvv 203
                 ++svr+ g s+  l+ k+lg + k  + l ++++lilv  v+        ++spa  +s +++ i+   + G++          +s+ +v+      v+
  EGE25499.1 101 MLSVRNSGASMPYLTGKYLGIIPKHFINLLAVVLLILVGVVF--------VASPAQLLSsITIDIFGTAATGTISVDN-----AESMAAVTGTSSNTVF 186
                 **********************99988877777777665555........4455554440455666666777765443.....3455566666667777 PP

        CstA 204 gseveealaelltlsketlaivlivYvfvAsvlPvwlllaPrdY.....lstflligtivllal.......gilv.vapelklpavtefvdgegpvfag 289
                 g++         ++  +++++++++Y ++A+ lP+ +++  r Y     l  f+ +g+  +l++       + ++ +++ l+   + +f++   p    
  EGE25499.1 187 GMTK--------ETIIVVWTAIIFIYYIIATLLPIDKIIG-RVYpifggLLLFMSLGMTYGLVMnelgstqSYFYsSMGGLS---FDAFFQNLQPKGDL 273
                 7766........444679******************9975.44432222445555555544444333332211112333444...55555555555555 PP

        CstA 290 slfPllfitiACGaiSGFHslvssgttskllekesdarlvgygamllEslvaila 344
                 +++Pllf+ti CGa+SGFH+   +   ++   +es+ r++ ygam+ E+++a++ 
  EGE25499.1 274 PIWPLLFLTITCGALSGFHAT-QTPLMARCAMNESEGRFIFYGAMIAEGIIALIW 327
                 9******************96.5566789999*******************9875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.22
        CstA 156 aespaavfsviltipialllGvllrklr 183
                     +a  sv+++ ++  + G+l r+ +
  EGE25499.1 431 RYFSWANQSVAVV-MLWTAAGYLYRYRK 457
                 2233333333322.22233344444443 PP

>> CstA_5TM  5TM C-terminal transporter carbon starvation CstA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.74   6.6e+03      79      94 ..     129     144 ..     128     164 .. 0.63
   2 ?   -0.2   0.2      0.14   1.3e+03      46      74 ..     196     225 ..     156     228 .. 0.57
   3 !   71.0   4.4   1.2e-23     1e-19       3     114 ..     365     474 ..     363     476 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.74
    CstA_5TM  79 lLAalaLlvvtvwllk 94 
                 lLA + L++v v+ + 
  EGE25499.1 129 LLAVVLLILVGVVFVA 144
                 5666666665555443 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.14
    CstA_5TM  46 kyvatliavalavllllwg......gintlWplFG 74 
                  ++a++++  +++             i  ++p+FG
  EGE25499.1 196 VWTAIIFIYYIIA-----TllpidkIIGRVYPIFG 225
                 2322222222222.....12334446678888888 PP

  == domain 3  score: 71.0 bits;  conditional E-value: 1.2e-23
    CstA_5TM   3 vaytfailfvalfalTtlDtatRlaRyilqellgelkkkaltnkyvatliavalavllllwggintlWplFGaaNQlLAalaLlvvtvwllktgrkalv 101
                 ++ +fa+l v+++ +T+ Dt++R aR+i+ e+l+ +++++l +++ +++i ++++ ++++  ++++lW++F++aNQ +A ++L++++ +l++ ++ ++v
  EGE25499.1 365 IGGVFAVLGVVILPITSGDTSFRAARLIIAEFLN-VEQRTLLKRL-GIAIPLFVIGFIISKVDFQILWRYFSWANQSVAVVMLWTAAGYLYRYRKLHWV 461
                 6789*****************************7.6666766665.44444444444434556*****************************9****** PP

    CstA_5TM 102 tliPmvfmlvvtl 114
                 + iP++fm + + 
  EGE25499.1 462 CTIPAIFMSAACY 474
                 ********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3836.87
//
Query:       EGE25500.1  [L=268]
Description: hypothetical protein EA1_06188 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-20   74.3   3.3    1.4e-19   71.4   1.9    1.9  2  TonB_dep_Rec  TonB dependent receptor


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.1    0.0015        28     204     235 ..      29      60 ..       9      71 .. 0.78
   2 !   71.4   1.9   7.6e-24   1.4e-19     287     469 ..      59     266 ..      58     266 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0015
                   ECCCEEEEEEEEEEEECETTEEEEEEEEEEEE CS
  TonB_dep_Rec 204 srsgsafsPsvglryrptddlslrasysrgfr 235
                    +++s+ s+s++ ++++t +++l ++ys+gf 
    EGE25500.1  29 PKTHSQHSYSLSPAFDVTKNINLQVKYSKGFY 60 
                   445577788888889999************95 PP

  == domain 2  score: 71.4 bits;  conditional E-value: 7.6e-24
                   EEEEEEEEEEEESSSSCSTTTCS...EEEEEEEEEEEEEEEEEEEEEEETTEE.....EEEEEEEEEEEEECECEEECTTTTSSTTEESEEEEEEEE CS
  TonB_dep_Rec 287 Fridiknfittdpdgpslgglgd...fqyqNvgkarikGvElelsyrltpgWg.....lglsgggytYydagddsdaddggnplpnvPkhtanlglt 375
                   F++d+ +f++++  +    + +    +q  N  +a++ G+E++        +g     +  +g+ ++Y  +  +++ +dg+ p++ ++++t ++g+ 
    EGE25500.1  59 FYTDFIDFVFRGLEDIERKSSRKwsvYQSMNRQNAKAEGIEINSVLK----LGelvpaI--NGTQLSYKMT-RQKGRADGNIPMNAIQPDTSVFGIG 148
                   7777777777777766666666687788888899********88666....55666655..6677887444.345677999**************** PP

                   EECSEEEEEEEESEEEEEE.........ECCSSEEEEECECCEE............EE--EEEEEEEEEEEESSSEEEEEEEESTTETCSCEEESTT CS
  TonB_dep_Rec 376 YkfpaggWgaglllagarY.........vavggrrygdaantfr............rvpgYtlldlslgYklpknltlslgvnNLfdkryyassgyy 451
                   Y+  ++++g      g  Y          ++ + +        +            r +gYt++dl+  Yk++knltl+lg++NL++k+ y++ ++ 
    EGE25500.1 149 YDAKNEKFG------GNLYitrvsakkaEDTYNLF--------WkeeqakdstlrwRSGGYTTVDLTGYYKPTKNLTLQLGAYNLTNKK-YMTWDSA 230
                   *44578899......44442111112222222223........2555555556679*******************************43.3333333 PP

                   ..................TTTCCEB--SEEEEEEEE CS
  TonB_dep_Rec 452 ..................glggypgpgRtfrlglry 469
                                     g++++ +pgR+f ++l+y
    EGE25500.1 231 csirpfgtsnmidkkndkGINRFLAPGRNFKVSLEY 266
                   566688888888**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1953.32
//
Query:       EGE25501.1  [L=176]
Description: hemoglobin and hemoglobin-haptoglobin-binding protein 4 precursor [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00016   21.7   2.8    0.00018   21.5   2.8    1.0  1  TonB_dep_Rec  TonB dependent receptor


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   2.8     1e-08   0.00018      47     198 ..      15     146 ..       2     162 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1e-08
                   CCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEE CS
  TonB_dep_Rec  47 gdnysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgggrsynrdndyyglgnvlaaeldlngdlwfGsnladgldyrk.lsd 142
                   +d + +t++k+ ++++   ld++     s+++         + +y +s+ ++        + ++ ++++a++ ++  d ++G       d+++ l++
    EGE25501.1  15 SDRDLNTNTKQINIDFKKRLDKG-----SVSH---------HMTYGASYETTEK------SMVNKSGYNAWSSTWWSDKTLG------WDFSEkLRT 85 
                   22233333444444444443333.....3333.........2333333333322......2223334444444443344488......666643444 PP

                   EECCBEESCCTC.......CSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSSS CS
  TonB_dep_Rec 143 dgydaydplnps.......gdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvfgkdl 198
                      d+ +++n+         ++   v+++  ++y+ d+i ++dr++l lG+Ry ++++ +++ 
    EGE25501.1  86 --CDNSSTFNGLlcprhttFSFLIPVKTKDGSVYLNDSILIGDRVRLGLGYRYNRIKYQPNYI 146
                   ..777777777777789985666666888899*********99**************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1308.15
//
Query:       EGE25502.1  [L=92]
Description: hypothetical protein EA1_06198 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.059   12.7   0.0      0.075   12.4   0.0    1.2  1  PurA      PurA ssDNA and RNA-binding protein


Domain annotation for each model (and alignments):
>> PurA  PurA ssDNA and RNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.2e-06     0.075     175     214 ..      52      91 ..      38      92 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-06
        PurA 175 dvGsnkyGvflrisevksnyrnsitvPekalvrfreeltk 214
                 dv + +yG f+r ++v  + r+++ +P+k   r+  +l+ 
  EGE25502.1  52 DVYEANYGRFVRTTQVNLDRRKTVLIPIKLTQRLLSILIR 91 
                 6778899999999999999999999999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 694.66
//
Query:       EGE25503.1  [L=88]
Description: membrane protein-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-30  105.0   3.7    2.2e-30  104.8   3.7    1.0  1  DUF4212   Domain of unknown function (DUF4212)
  ------ inclusion threshold ------
      0.062   13.2   0.0       0.23   11.4   0.0    1.8  2  Syndecan  Syndecan domain
        1.5    8.1   5.7          2    7.7   0.8    2.0  2  MtrE      Tetrahydromethanopterin S-methyltransferase, subuni


Domain annotation for each model (and alignments):
>> DUF4212  Domain of unknown function (DUF4212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   3.7   3.8e-34   2.2e-30       2      78 ..      10      85 ..       9      86 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 3.8e-34
     DUF4212  2 kaYwrenlrlililLviWfvvsfglgillaeelntirtflgfplgFwfaaqgsilvfvvlifvYalrmdrlDekygv 78
                ++Yw +n+r+i i+L+iW++vs g++i+l++ l+ i+ f+g +lgFwf++qgsil+f++lif+Y +rm++l+e++gv
  EGE25503.1 10 SGYWAANVRIITICLIIWALVSHGFAIWLRPMLSGIQ-FGGADLGFWFGQQGSILCFILLIFFYSWRMNKLEERFGV 85
                58**********************************6.*************************************98 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.27   1.6e+03      21      28 ..      19      26 ..       5      32 .. 0.64
   2 ?   11.4   0.0   3.9e-05      0.23      19      39 ..      61      81 ..      56      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.27
    Syndecan 21 lfaillvl 28
                +++i+l++
  EGE25503.1 19 IITICLII 26
                33444443 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.9e-05
    Syndecan 19 gllfaillvlflvYRmrKKDE 39
                ++l++ill+ f  +Rm K  E
  EGE25503.1 61 SILCFILLIFFYSWRMNKLEE 81
                689*************99665 PP

>> MtrE  Tetrahydromethanopterin S-methyltransferase, subunit E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.8   0.00033         2     134     170 ..      13      49 ..       2      54 .. 0.88
   2 ?    3.4   0.4    0.0066        40     224     244 ..      56      76 ..      51      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00033
        MtrE 134 fiavfaivvlsylmtlvlkhpfplpllaliwGitvGa 170
                 + a + i++++ ++++ ++h f++ l  ++ Gi  G+
  EGE25503.1  13 WAANVRIITICLIIWALVSHGFAIWLRPMLSGIQFGG 49 
                 5577889***************************997 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0066
        MtrE 224 fggpltGlafglivflelWrt 244
                 fg   + l+f l++f+ +Wr 
  EGE25503.1  56 FGQQGSILCFILLIFFYSWRM 76 
                 6777788************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 632.35
//
Query:       EGE25504.1  [L=590]
Description: Na+ solute symporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-53  182.1  33.7    3.1e-36  125.1  21.3    2.2  2  SSF       Sodium:solute symporter family
  ------ inclusion threshold ------
      0.021   15.4   0.1       0.15   12.7   0.1    2.5  1  DUF2818   Protein of unknown function (DUF2818)


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1  21.3   3.4e-40   3.1e-36       1     254 [.      33     297 ..      33     313 .. 0.87
   2 !   62.9   4.5   2.7e-21   2.4e-17     288     406 .]     390     506 ..     359     506 .. 0.90

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 3.4e-40
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlrnagalTlpdylskRfkgkrilvylsalslllvitl 99 
                 +++ag+ + ++v+g+++aa+ +saasf+ +aG+ a+ G+a +++ +g + +++ll llla+ lr+ g++T+pd++  Rf +k   ++++++ l+l+ t+
  EGE25504.1  33 FYVAGGGVHPVVNGMATAADWMSAASFISMAGMLAMGGYAASAYLMGWTGGFVLLALLLAPYLRKFGKFTVPDFIGDRFYSKT-ARLVAVVCLILACTT 130
                 8**********************************************************************************.*************** PP

         SSF 100 klsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevG........gleslveklkeaapkvvdl. 189
                 +++ ++ g+++ +   l ++ +t++++ a+++  Y v+GG+  ++yt++ q ++++v+ +i +i+  l++          + + v++ + +  k++ + 
  EGE25504.1 131 YVIGQMTGAGVAFSRFLEVDSNTGLIIAAIVVLFYAVLGGMKGITYTQVAQYCVLMVAYIIPAIFISLNLTgnpipqlgMFGNDVSTGMPILQKLD-Ml 228
                 ************************************************************988887555441222111045566666666666552.23 PP

         SSF 190 .....ltpdslkllrdpltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmis 254
                      + ++ + ++ + l++ +l   l++G+aglph+++Rf+++ +++ ++ +    +i+++l++  + +
  EGE25504.1 229 vadlgF-AQYTADVPNKLNMFLLTTSLMIGTAGLPHVIIRFFTVPKVSDARISAGWTLIFIALLYTTAPA 297
                 344342.4444578899999999999**********************9999999999999999887655 PP

  == domain 2  score: 62.9 bits;  conditional E-value: 2.7e-21
         SSF 288 llpnllaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavlavil 386
                  lp+++ Gl+ a  lAa +st ++lll+ ssa+++Dl kk ++    ++k ++ ++ri + + i++a  l ++++    +++v++af+++as  ++ ++
  EGE25504.1 390 NLPSWVIGLIAAGGLAAALSTAAGLLLAISSAISHDLIKKTIKPD-INDKGELMAARISMTIAIVVATYLGMNPPGF-TAQVVAVAFGIAASSLFPALM 486
                 479*****************************************9.888999999999999**************99.9******************** PP

         SSF 387 lalfwkrvneqGAlagliiG 406
                 +++f kr+n+ GA ag+i+G
  EGE25504.1 487 MGIFSKRINSTGATAGMIAG 506
                 ******************98 PP

>> DUF2818  Protein of unknown function (DUF2818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.6e-05      0.15       7      67 ..     253     314 ..     246     317 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
     DUF2818   7 llalvaANLPflserlflviplkkaeKslalrllEllvlylvvgllalllE.aragnvaaqg 67 
                  l++ +A LP++  r+f+v +++ a+ s+ + l+ + +ly+ + +++ +   + + +v++qg
  EGE25504.1 253 SLMIGTAGLPHVIIRFFTVPKVSDARISAGWTLIFIALLYTTAPAVGSMARlNIINTVYPQG 314
                 456668*****************************************999878888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4185.37
//
Query:       EGE25505.1  [L=152]
Description: hypothetical protein EA1_06213 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.076   12.9   0.0       0.14   12.0   0.0    1.4  1  PsbJ      PsbJ


Domain annotation for each model (and alignments):
>> PsbJ  PsbJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.1e-06      0.14       6      22 ..      29      45 ..      27      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.1e-06
                SS-HHHHHHHHHHHHHH CS
        PsbJ  6 RIPLWlVatvaGlgvit 22
                R P W+V ++aGlg i+
  EGE25505.1 29 RAPKWIVPIAAGLGMIG 45
                88*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1161.64
//
Query:       EGE25506.1  [L=398]
Description: cobyrinic acid a,c-diamide synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-98  326.6   0.6      2e-97  325.5   0.1    1.7  2  ParA         NUBPL iron-transfer P-loop NTPase
    3.7e-15   56.1   0.0    2.4e-14   53.5   0.0    2.2  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    1.6e-09   38.0   8.1    4.8e-09   36.4   4.5    2.7  2  AAA_31       AAA domain
      2e-08   34.0   1.2    2.3e-07   30.6   0.3    2.4  2  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
      3e-08   33.3   0.1    5.3e-08   32.5   0.1    1.5  1  MipZ         ATPase MipZ
    0.00014   21.4   0.5     0.0059   16.1   0.5    2.3  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    0.00015   21.2   0.4     0.0026   17.1   0.2    2.8  4  VirC1        VirC1 protein
    0.00019   20.7   6.0    0.00071   18.9   1.2    2.9  4  ArsA_ATPase  Anion-transporting ATPase
     0.0011   18.9   0.5       0.15   11.8   0.0    2.3  2  AAA_26       AAA domain
     0.0015   17.6   0.1     0.0023   16.9   0.1    1.3  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
     0.0065   14.7   2.0     0.0076   14.5   0.3    1.9  3  FTHFS        Formate--tetrahydrofolate ligase
     0.0081   15.8   0.2      0.016   14.8   0.2    1.4  1  SRP54        SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.024   14.4   0.0      0.046   13.5   0.0    1.6  1  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
      0.065   12.8   0.1       0.14   11.8   0.1    1.6  1  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.94   1.2e+03     171     203 ..      33      65 ..      22     106 .. 0.68
   2 !  325.5   0.1  1.6e-100     2e-97       2     242 ..     141     379 ..     140     385 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.94
        ParA 171 veNmsgfvcpkcgekteifgkgggeklaeelgv 203
                 +e m ++  +  + +++if+++ +++l ++++ 
  EGE25506.1  33 IEKMDIVDDKILQLQMRIFESDDTAELEKQYHK 65 
                 778888888888888889988888888877654 PP

  == domain 2  score: 325.5 bits;  conditional E-value: 1.6e-100
        ParA   2 vkkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqsekkliPveakgikvmSigfllesedeavvwrGpmkskai 100
                 ++++iav+SgKGGVGKSt++vnlAlaL+k+g++vg+lDaDiyGpsip++lgv ++kp ++++++iP++a+g+ v+Sig l++ e++++ wrG ++++a+
  EGE25506.1 141 ITHIIAVASGKGGVGKSTTTVNLALALQKMGKRVGILDADIYGPSIPTMLGVATKKPIVENDQFIPIDANGMAVLSIGNLIDAENTPIAWRGIKATGAL 239
                 89**********************************************************99************************************* PP

        ParA 101 kqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifgkgggeklae 199
                  ql+++++w +lDyL+iD+PPGtgD+qlt+aq++pl+ga+iVttpq++al d+kk++emf+k++++vlG++eNm+ ++c++cg++++ifg+ggg+++a+
  EGE25506.1 240 MQLYNQTNWPQLDYLLIDMPPGTGDIQLTLAQRIPLTGAIIVTTPQHIALLDAKKGVEMFHKTDIRVLGIIENMALHTCTHCGHTEAIFGTGGGDEMAK 338
                 *************************************************************************************************** PP

        ParA 200 elgvpllgeipldpeireasdegkplvlkepeseaakaleeia 242
                 +++vpllg++pld +ir a+d+gk    +  +++ a ++e+ia
  EGE25506.1 339 AYDVPLLGQLPLDASIRAAMDNGKAD--ELIDANLAWHYEHIA 379
                 ***********************953..333445555555555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.9e-17   2.4e-14       1     125 [.     145     361 ..     145     364 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.9e-17
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH...HTTEB-HHHH.......................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx.......................................... RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlai...leglendiep.......................................... 54 
                 ia+as+kGGvGK+t+++nLa al++ g+rV  +DaD  +++  +   + ++++                                              
  EGE25506.1 145 IAVASGKGGVGKSTTTVNLALALQKMGKRVGILDADIYGPSIPTmlgVATKKP---Ivendqfipidangmavlsignlidaentpiawrgikatgalm 240
                 89***************************************997444333333...255699************************************* PP

                 ..................................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHH...... CS
                 ..................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF
        CbiA  55 ..................................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkeal...... 97 
                                                                   d+k+++e++++ +++      ++g++ n+     ++  + ea+      
  EGE25506.1 241 qlynqtnwpqldyllidmppgtgdiqltlaqripltgaiivttpqhiallDAKKGVEMFHKTDIR------VLGIIENMALHTCTHCGHTEAIfgtggg 333
                 ***********************************************************999955......8999999877666666666655333333 PP

                 HHHHHHCTS-EEEEEE--CCHCCCCHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  98 eelkqrygvpvlgviprdeavaeaparg 125
                 +e  ++y vp+lg +p d ++  a  +g
  EGE25506.1 334 DEMAKAYDVPLLGQLPLDASIRAAMDNG 361
                 4445555888888888888887777666 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       5.1   6.6e+03      48      71 ..      59      82 ..      30      95 .. 0.60
   2 !   36.4   4.5   3.7e-12   4.8e-09       2      42 ..     143     183 ..     142     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.1
      AAA_31 48 lgiekneiektlyevlieeknike 71
                l+ + ++++++ly + i+e+ni+ 
  EGE25506.1 59 LEKQYHKLQQKLYPIGIKEVNINV 82
                333333455555555555555554 PP

  == domain 2  score: 36.4 bits;  conditional E-value: 3.7e-12
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQa 42 
                 ++Ia+a  KGGvGK+Tt+vnla al k+gk+v + D+D  +
  EGE25506.1 143 HIIAVASGKGGVGKSTTTVNLALALQKMGKRVGILDADIYG 183
                 79************************************755 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.4   5.6e+03     212     244 ..      37      70 ..      17      75 .. 0.66
   2 !   30.6   0.3   1.8e-10   2.3e-07       6     244 ..     149     382 ..     143     393 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.4
   Fer4_NifH 212 eivrkaelr.kktvieyapeseqakeyrelarki 244
                 +iv  + l+ ++ ++e ++++e  k+y++l +k+
  EGE25506.1  37 DIVDDKILQlQMRIFESDDTAELEKQYHKLQQKL 70 
                 4444444441345677777788888888877765 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 1.8e-10
   Fer4_NifH   6 yGkGGiGksttsqnlsaalaemgkkvlivGCDPkaDstrlllggkaqetvldtlrekgavedvkvedvvkkGyggvkcvesGG..PepGvGCaGrgvit 102
                  GkGG+Gkstt+ nl+ al++mgk+v i+  D    s         ++t+l ++++k     v++++ +    +g+ ++  G       +  a rg+  
  EGE25506.1 149 SGKGGVGKSTTTVNLALALQKMGKRVGILDADIYGPS---------IPTMLGVATKKPI---VENDQFIPIDANGMAVLSIGNliDAENTPIAWRGIKA 235
                 5*************************99987755555.........5666666666665...4444444444455544444441122334456666655 PP

   Fer4_NifH 103 aielle..elgayddlDfvlyDvLGDvvCGGfalPiredka.qevyivtsgelmalyaanniakgiekyaksggvrlgGliinsrkvd....dereli. 193
                 +  l++  ++  + +lD++l D+      G   l ++++      +ivt+ +  al  a    kg+e + k+ ++r+ G+i n    +     ++e i 
  EGE25506.1 236 TGALMQlyNQTNWPQLDYLLIDMPPG--TGDIQLTLAQRIPlTGAIIVTTPQHIALLDAK---KGVEMFHKT-DIRVLGIIENMALHTcthcGHTEAIf 328
                 55554411333444677777776422..34444444443321345667777777777664...577666554.57777777774321111112333333 PP

   Fer4_NifH 194 .....ekfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarki 244
                      +++a++ ++++l  +P+d  +r a  + k   +   +++ a +y+++a+ +
  EGE25506.1 329 gtgggDEMAKAYDVPLLGQLPLDASIRAAMDNGKA--DELIDANLAWHYEHIAKLV 382
                 33333566777777777777777777666555443..2233344556666666655 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   4.1e-11   5.3e-08       1      49 [.     143     191 ..     143     292 .. 0.66

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.1e-11
                 EEEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHH CS
        MipZ   1 hvivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlaryle 49 
                 h+i ++  kGG Gkstt+v +a aL k+G+rv+ +d d+   ++   l+
  EGE25506.1 143 HIIAVASGKGGVGKSTTTVNLALALQKMGKRVGILDADIYGPSIPTMLG 191
                 89************************************98777666554 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.5   4.6e-06    0.0059       3     133 ..     144     268 ..     142     294 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.6e-06
    CBP_BcsQ   3 vlalqGvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhFnvdieqregwaraeldgapwrqaaleyapgldllPfGelnveekenlqq.lae 100
                 ++a+   +GGvG+++ ++ La al+++g++v ++D+    +   +    i +  g a ++    +  q +   a+g+++l  G+l ++e++ ++    +
  EGE25506.1 144 IIAVASGKGGVGKSTTTVNLALALQKMGKRVGILDAD---IYGPS----IPTMLGVA-TKKPIVENDQFIPIDANGMAVLSIGNLIDAENTPIAWrGIK 234
                 67777789*************************9974...22222....22222322.22222333333444455666666666666666665553445 PP

    CBP_BcsQ 101 kaeallaalkelk.eqyrwillDlpagasaltre 133
                 +++al++  ++ +  q +++l+D+p g+ +++ +
  EGE25506.1 235 ATGALMQLYNQTNwPQLDYLLIDMPPGTGDIQLT 268
                 5566666666666566666666666666665555 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.39     5e+02      60      88 ..      47      75 ..      27      85 .. 0.81
   2 !   17.1   0.2     2e-06    0.0026       3      40 ..     144     181 ..     142     187 .. 0.93
   3 ?   -1.9   0.0       1.3   1.7e+03     174     212 ..     196     234 ..     186     244 .. 0.80
   4 ?   -1.4   0.0      0.88   1.1e+03      72     142 ..     239     316 ..     233     320 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.39
       VirC1 60 acevfvadelplleaayeeaegeGfdyal 88
                +  +f +d+ + le+ y++ +++ + + +
  EGE25506.1 47 QMRIFESDDTAELEKQYHKLQQKLYPIGI 75
                5679999**********999988887765 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2e-06
       VirC1   3 litfcslkGGaGkttalmglcsalasdgkrvalfeade 40 
                 +i+++s kGG Gk+t+ + l  al   gkrv++++ad 
  EGE25506.1 144 IIAVASGKGGVGKSTTTVNLALALQKMGKRVGILDADI 181
                 7999********************************95 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.3
       VirC1 174 vplherdafaalkerGmlhltlenlsaapsmrlilrnlr 212
                  p+ e d f  +   Gm  l + nl  a    ++ r ++
  EGE25506.1 196 KPIVENDQFIPIDANGMAVLSIGNLIDAENTPIAWRGIK 234
                 688999999999999999999999988877777766655 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.88
       VirC1  72 leaayeeaegeGfdyaladtrgGsselnnti.....iassdllliPtmltpldidealatyryv.iell.laeelaip 142
                 l + y++ +    dy l+d   G+ ++  t+     ++ + ++  P  ++ ld+ + ++ +    i +l + e++a++
  EGE25506.1 239 LMQLYNQTNWPQLDYLLIDMPPGTGDIQLTLaqripLTGAIIVTTPQHIALLDAKKGVEMFHKTdIRVLgIIENMALH 316
                 556677777777788888877777776665512211122223334666677777776666654313444455665555 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1         2   2.5e+03     180     204 ..      29      53 ..       3      79 .. 0.53
   2 !   18.9   1.2   5.5e-07   0.00071       5      38 ..     147     180 ..     142     225 .. 0.87
   3 ?   -1.6   0.0      0.97   1.2e+03     106     136 ..     232     263 ..     199     273 .. 0.81
   4 ?    3.1   0.0     0.035        45     207     247 ..     276     316 ..     268     327 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2
                  HHHHHHHHHHHHHHHHHHHHHHTST CS
  ArsA_ATPase 180 ieealeeleetkeeikkveeiltdp 204
                    +++e+++ + ++i +++  + + 
   EGE25506.1  29 FRQYIEKMDIVDDKILQLQMRIFES 53 
                  4444555544444444444333333 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 5.5e-07
                  EEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   5 lvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  + +GKGGVGK+t    +a+ l ++gk+v ++  D
   EGE25506.1 147 VASGKGGVGKSTTTVNLALALQKMGKRVGILDAD 180
                  569************************9888777 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.97
                  THHHHHHHHHHHHHHHCSSSSEEEEESBS.CC CS
  ArsA_ATPase 106 GideilsfeellkyvkeeeydvvvlDtaP.TG 136
                  Gi    ++++l + ++  + d++++D +P TG
   EGE25506.1 232 GIKATGALMQLYNQTNWPQLDYLLIDMPPgTG 263
                  67777788888888999999******999455 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.035
                  EEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE-T CS
  ArsA_ATPase 207 tsfrlVvipEklslkEteRaikeLkkygikvdavivNkllp 247
                  t  ++V++p +++l + ++ ++ ++k +i+v  +i N  l 
   EGE25506.1 276 TGAIIVTTPQHIALLDAKKGVEMFHKTDIRVLGIIENMALH 316
                  66789******************************998775 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.6      0.02        25       3      33 ..     145     175 ..     143     177 .. 0.89
   2 !   11.8   0.0   0.00012      0.15     131     196 ..     278     356 ..     257     358 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.02
      AAA_26   3 ifvtgtdtgvGKTvvslgLvralkrkgvkvg 33 
                 i v++   gvGK++++  L+ al++ g +vg
  EGE25506.1 145 IAVASGKGGVGKSTTTVNLALALQKMGKRVG 175
                 66888899***************99999998 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00012
      AAA_26 131 vilVargglgtinqllltiealrqknvrvlGvilNkvrnp....envetlekksg.........ipvlGvvPylpdlea 196
                  i+V+++++ ++ ++   +e+++++++rvlG+i N   +        e+++ ++g         +p+lG++P +++++a
  EGE25506.1 278 AIIVTTPQHIALLDAKKGVEMFHKTDIRVLGIIENMALHTcthcGHTEAIFGTGGgdemakaydVPLLGQLPLDASIRA 356
                 588899999999999999*****************954444444344444444444444444449*******9998876 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.8e-06    0.0023      24      66 ..     137     180 ..     115     193 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.8e-06
                 GG-S-SEEEEE.EE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB  24 akaGraqvvGl.tGvPGaGkstlvealglelrrrGkrvavlavD 66 
                 a+   ++ + +  G  G+Gkst++ +l+l l++ Gkrv++l  D
  EGE25506.1 137 AHPRITHIIAVaSGKGGVGKSTTTVNLALALQKMGKRVGILDAD 180
                 5555566776635999************************9877 PP

>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.61   7.8e+02     430     482 ..      27      80 ..      13     102 .. 0.61
   2 !   14.5   0.3     6e-06    0.0076      46      90 ..     131     175 ..     113     194 .. 0.79
   3 ?   -3.5   0.0       1.7   2.2e+03     228     255 ..     223     250 ..     219     251 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.61
                 -.---SS-TTS-HHHHHHHHHHHTT--SEEEE-HHHHHHH.HHHHHTTCTTS-E CS
       FTHFS 430 kefkflYdlelsieekietiakeiYgadgvelseeakkkl.kklekqgldklpv 482
                 + f++  ++ + +++ki ++  +i+++d+    e+  +kl +kl   g++++ +
  EGE25506.1  27 QPFRQYIEKMDIVDDKILQLQMRIFESDDTAELEKQYHKLqQKLYPIGIKEVNI 80 
                 567777777777788888888888888765444443333314455555555555 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 6e-06
                 TCTTTS-.-EEEEEEESS--TT--SHHHHHHHHHHHHHHTT--EE CS
       FTHFS  46 rllkekkkgklilvtaitPtplGeGKttttigLaqalnklgkkav 90 
                 ++++ + + ++  + a++  + G GK+ttt+ La al+k+gk++ 
  EGE25506.1 131 KQSQLNAHPRITHIIAVASGKGGVGKSTTTVNLALALQKMGKRVG 175
                 4445556677888999999**********************9975 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.7
                 TTS-EEECCCCT-HHHHHHHTTTTTS-E CS
       FTHFS 228 kdgepvtaedlkvagalavllkdaikPn 255
                  +++p+  + +k++gal+ l +++  P 
  EGE25506.1 223 AENTPIAWRGIKATGALMQLYNQTNWPQ 250
                 67899999*********99988876665 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.3e-05     0.016       7      40 ..     149     182 ..     143     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
                 EESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTS CS
       SRP54   7 vGlqGaGKTttlaKLaallkkegkkvllvaaDtf 40 
                  G  G+GK tt+  La  l+k+gk+v +  aD++
  EGE25506.1 149 SGKGGVGKSTTTVNLALALQKMGKRVGILDADIY 182
                 5889****************************99 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.6e-05     0.046       1      52 [.     150     198 ..     150     305 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.6e-05
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGqseispPgtislalverpi 52 
                 G+  +GKST + +L+  + ++g+++ ++D+D+  ++  +P ++++a  + pi
  EGE25506.1 150 GKGGVGKSTTTVNLALALQKMGKRVGILDADIYGPS--IPTMLGVATKK-PI 198
                 66789***************************9987..78888887744.33 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00011      0.14      32      57 ..     142     167 ..     108     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
      AAA_25  32 agelallaGapgtGKttlaldlalav 57 
                  + +a+  G +g+GK+t +++lala+
  EGE25506.1 142 THIIAVASGKGGVGKSTTTVNLALAL 167
                 57789999***************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       948  (0.0528752); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 2867.48
//
Query:       EGE25507.1  [L=369]
Description: S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-127  425.5   0.0   1.4e-127  425.3   0.0    1.0  1  Queuosine_synth  Queuosine biosynthesis protein


Domain annotation for each model (and alignments):
>> Queuosine_synth  Queuosine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.3   0.0    8e-132  1.4e-127       1     325 []      10     353 ..      10     353 .. 0.95

  Alignments for each domain:
  == domain 1  score: 425.3 bits;  conditional E-value: 8e-132
                      X-TT-----GGGB-SS--SSGGGSEEEEEETTTTEEEEEEGGGGGGG--TT-EEEEEEEEE-S-EEEEE--.---EEEEEEEE........... CS
  Queuosine_synth   1 lsdfdfeLpeeliAqePaeeRdesrLlvldrktgeiehkrfrdlvdlLregdlLvlNdtkviparllgekektggkvevlllkel......... 85 
                      lsd+d++Lp++liA++P++eR++srLl++++++  +++ rf+dl++lL++gdlLvlNdtkvi+arl+g+k+ tgg+vevl+++ l         
       EGE25507.1  10 LSDYDYHLPDDLIARYPLNERTSSRLLHVSKNS--CQDLRFTDLPNLLKSGDLLVLNDTKVIKARLHGQKQ-TGGAVEVLIERILpdeinnnly 100
                      589***************************875..9********************************995.7*********866888899999 PP

                      .EEEEEES-TT--TT-EEEE....EEEEEEEETT.S-EEEEEE....HHHHHH---------.......----------..----------GGG CS
  Queuosine_synth  86 .wealvkpakklkageklel....lkaevlekeeegerlvkfeeeleelleelGevplppyikr.....dkerYqtvya..keegsvaaPtAgl 167
                       + ++v++++++k+g++l+l    ++a+v+ + +++  ++ f++ + + l+++G++p+ppy +r     d+erYqtv+   +++ svaaPtA+l
       EGE25507.1 101 kALCHVRSSRSPKVGQTLNLannqMQATVIGR-QDNLFILGFRSPILADLDNYGQMPIPPYFERkadetDDERYQTVFHnpTKSASVAAPTASL 193
                      9******************************8.5689999**********************888888899*******9555789********* PP

                      G--HHHHHHHHHHT-EEEEEEEEE--------------------EEEEE-HHHHHHHHHHHHHT--EEEESHHHHHHHH...H...HT..SSEE CS
  Queuosine_synth 168 hFteelleklkakgvevaevtLhvGlgtfrpvevedieehkmhsEryevseetaeainaakaeggrviAVGTTsvRalEsaaseegaa..kaas 259
                      hF+++ll++l++kgv++a+vtLhvG gtf pv+v+++++h mh+E+ +++++ta+ in++k++ggr+iAVGTT++R+lE+a +++ +    ++ 
       EGE25507.1 194 HFDDALLTQLRKKGVQIAFVTLHVGSGTFTPVKVDNLADHVMHAEYAHLPASTATLINNTKSAGGRIIAVGTTVTRTLETAHRHRIHGelVEFL 287
                      *******************************************************************************887744333447778 PP

                      E-------SS---SS-SEEEEE---TT-HHHHHHHHHH-HHHHHHHHHHHHHTT--BSTTS-EEEE CS
  Queuosine_synth 260 getdlfiypgykfkvvdaLlTnfhlPkStllmlvsAfagrekileaYkeAveekYrFfsyGDamli 325
                      g+t++fiyp+y+f vvd+L+TnfhlPkStllmlvsAfag+++i+eaY++A+++kYrFfsyGDam++
       EGE25507.1 288 GDTQIFIYPPYEFGVVDCLITNFHLPKSTLLMLVSAFAGTQTIQEAYNHAIKNKYRFFSYGDAMFL 353
                      ****************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2729.33
//
Query:       EGE25508.1  [L=382]
Description: queuine tRNA-ribosyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.7e-151  504.3   0.0   2.1e-151  504.0   0.0    1.0  1  TGT             Queuine tRNA-ribosyltransferase
  ------ inclusion threshold ------
       0.17   11.8   0.0       0.38   10.7   0.0    1.5  1  Arm-DNA-bind_2  Arm DNA-binding domain


Domain annotation for each model (and alignments):
>> TGT  Queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  504.0   0.0  2.4e-155  2.1e-151       3     348 ..      15     373 ..      11     375 .. 0.97

  Alignments for each domain:
  == domain 1  score: 504.0 bits;  conditional E-value: 2.4e-155
                 EEEEEEEETTEEEEESEEEEBETTSSBTTB-HHHHH.HTTES-EEEEHHHHHHTTTHHHHHHTTHHHHHHT--S-EEEE-SHHHHHHH.E..EEESSEE CS
         TGT   3 aRlGklelphgtietPafmpvgtqgtvkgltpdelkeelgaqiilsntyhlelrpgeelvakagglhkflgwdkpiltdsggfqvfsl.k..kiteegv 98 
                 aR+G+++l+hg+++tPafmpvgt+gtvkg+ p+++ + +ga+iil+nt+hl+lrpg e+++++gglh+f+gwdkpiltdsggfqvfsl +  ki+eegv
  EGE25508.1  15 ARRGTVSLAHGNVQTPAFMPVGTYGTVKGMLPRDI-HGIGADIILGNTFHLWLRPGMEVIRHFGGLHHFIGWDKPILTDSGGFQVFSLgAmrKISEEGV 112
                 9**********************************.599*************************************************8356******* PP

                 EEE-TTTS-EEEE-HHHHHHHHHHHT-SEEE-------SS--HHHHHHHHHHHHHHHHHHHHHH......SEEEEEE--TT-HHHHHHHHHHHHHH--S CS
         TGT  99 sfqsridGskvlltpeesieiqeklgsDiimalddvvpspaskkrveksverTlrwldrcleah......qalfgivqGglyedlreesaeelakrdfd 191
                  f+s++dG kv+l+pe+s++iq++l+sDiim++d+++p+pa+++ ++ks+e +lrw +rcl++h      +alfgi+qG++y+dlr++s++ l k+ fd
  EGE25508.1 113 AFRSPVDGAKVFLSPETSMQIQNDLNSDIIMQFDECTPYPATHDDAKKSLELSLRWGQRCLDEHhrlgnkNALFGIIQGSMYKDLRMQSLQGLLKMPFD 211
                 *************************************************************9999****666*************************** PP

                 EEEE-SSSSSSHHHHHHHHHHHHGGGS-TTS-EEETTB-SHHHHHHHHHTT--EEEESHHHHHHHTTEEEE.....TTEEEETTSGGGTT--SBSSSS- CS
         TGT 192 gyaigGlsvgeekeellevveavtellpedkprylmGvgtPedlleavalGvDmfdcvyptrtarngralt.....segelnlknakyaedfspldegC 285
                 gyaigGlsvge+kee+++v++++  ++p+dkprylmGvg+P d++eav++GvDmfdcv+ptr+arng++++     ++g +++kn++y++d +plde+C
  EGE25508.1 212 GYAIGGLSVGEPKEEMIKVLDYLPCTMPDDKPRYLMGVGKPADIVEAVRRGVDMFDCVMPTRNARNGHYFVtgnhdNKGVIRIKNSQYRTDDTPLDEHC 310
                 ***********************************************************************78776689******************** PP

                 -SHHHHH-BHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
         TGT 286 sCytCknytraylhhllktkemlgaiLltiHNlhyylelfkriReaIkegtfeefveefarky 348
                 +CytC+n++rayl hl+k+keml a+L+tiHNl+yy++l+ +iR+aI+   f+efv +f++++
  EGE25508.1 311 DCYTCQNFSRAYLYHLHKCKEMLSAQLATIHNLRYYQRLMVDIRQAIEHHAFDEFVVQFYARW 373
                 ***********************************************************9876 PP

>> Arm-DNA-bind_2  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.2e-05      0.38      17      56 ..     323     363 ..     318     372 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.2e-05
  Arm-DNA-bind_2  17 rykGkrcresl.glpdtpanrKkaerllaeIeeeIalGtFd 56 
                      y+ ++c+e l    +t  n+++ +rl   I+++I++  Fd
      EGE25508.1 323 LYHLHKCKEMLsAQLATIHNLRYYQRLMVDIRQAIEHHAFD 363
                     588899*****557799*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2937.58
//
Query:       EGE25509.1  [L=578]
Description: phosphatidylethanolamine Kdo2-lipid A phosphoethanolamine transferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-41  141.5   6.0    1.9e-41  141.5   6.0    1.9  2  EptA_B_N   Phosphoethanolamine transferase EptA/EptB
    1.1e-38  133.4   0.5    1.7e-38  132.7   0.5    1.3  1  Sulfatase  Sulfatase
  ------ inclusion threshold ------
      0.071   12.8   0.0       0.31   10.7   0.0    2.0  2  LupA       Legionella ubiquitin-specific protease A domain
        1.5    8.8  12.1          5    7.2  12.1    1.9  1  MARVEL     Membrane-associating domain
        3.3    7.3   6.6       0.93    9.1   2.3    2.0  2  DUF4131    Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> EptA_B_N  Phosphoethanolamine transferase EptA/EptB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       0.5   1.8e+03     103     122 ..      45      67 ..      29      79 .. 0.56
   2 !  141.5   6.0   5.3e-45   1.9e-41       2     151 ..      87     236 ..      86     237 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.5
                 HHHHHHHHHHHHHT...THHHHH CS
    EptA_B_N 103 llvallvivlvall...fykdya 122
                 l++a++ i+l++++   f++++ 
  EGE25509.1  45 LFMAIVAIFLTTTAnvtFFQQVM 67 
                 33333333333333111444444 PP

  == domain 2  score: 141.5 bits;  conditional E-value: 5.3e-45
                 HHHHHHHHHHH--TTTHHHHHHHHHHHHHHHHHHHHHS----SHHHHHHHHH--HHHHHTT--HHHHHHHHHHTHHHHHHHHH-EE----HHHHHHHHH CS
    EptA_B_N   2 laalllllsllslryllkpllilllllsaaasYfmdtYgvvidkdMirNvleTdvaEasellslklllyllllgvlPallllrvkikrksllkellkrl 100
                 + +lllll ll +r +lk ++i+++l++a+a +f+dtYg+v d++M++N+l+Td+aE+++lls+kll+ ++ll+ lP+++++  +++  +l+ +l+krl
  EGE25509.1  87 TGVLLLLLVLLGYRHTLKTVAICFILIAAFAGHFTDTYGTVYDTTMLQNALQTDTAETKDLLSMKLLIRVVLLAGLPICWIIGQPLSFGTLKASLMKRL 185
                 678999********************************************************************************************* PP

                 HHHHHHHHHHHHHHHTTHHHHHHHHHH-TTGGGGSTTHHHHHHHHHHHHHH CS
    EptA_B_N 101 alllvallvivlvallfykdyaslfRnnkelrylinPtnyiyslvkylkkq 151
                 ++ lval++++l +l+f+++yas+fR++k lr  +nP+ ++ys+ k+++ +
  EGE25509.1 186 VTYLVALALVGLPILAFSSQYASFFREHKPLRFFTNPVTVMYSAGKLANMS 236
                 *********************************************999865 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.5   4.8e-42   1.7e-38       2     309 .]     266     562 ..     265     562 .. 0.90

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 4.8e-42
                 EEEEEEESSE-TTGSGGGTTTSCSSHHHHHHH..HTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEE CS
   Sulfatase   2 nvvliladdlgagdlglyggktattpnldrla..eeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaa 98 
                  vv +++++++a++ +++g+ +at p++d+l    +  +f n+ s++++++ s++++++ + ++ ++         +  +  ++++++ l + G++   
  EGE25509.1 266 LVVMVVGETARADHASFNGYQRATFPHMDKLIglGQVHNFGNVTSCGTSTAYSVPCIFSYLGAEKYD---------VDTADYHENVIDTLDRLGVAI-- 353
                 59******************************999*******************************9.........99*******************.. PP

                 EEES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHHHCCCTSSEEEEEEE-TTSSSTCTCGGHTCCGS CS
   Sulfatase  99 igkwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefllarndkpfflylatlapHappeapdeyakkya 197
                        w +++s  k+  ++r+ +  + ++++k+++ +++n+ +  ++p  ++ d  +l  + + ++a ++++ +++l+ +++H+ p + ++y +++a
  EGE25509.1 354 ------LWRDNNSDSKG-VMNRLPA--KQYQDYKNSPLQGGNNTICHTNPYDECRDVGMLVDLDDHVKAHANQDILIVLHQMGNHG-PAYYKRYDDEFA 442
                 ......88888885443.3334444..4455666666666666666669999**************87777**************6.8*********** PP

                 TTTTCCCCCCH......HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEE CS
   Sulfatase 198 tffddgseaar......qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvs 290
                 +f + + + +        +++ay+n++  +Dd++++ +++L  ++   +t ++++SDhg+sl+e++++l+g ++a a+++++ +P+l+w     + +v 
  EGE25509.1 443 QFLPVCTSSELaecerqTVINAYDNALLATDDFLKQTIDWL-AAQTHADTAMLYLSDHGESLGEKGVYLHGMPKAFAPKEQLSIPALLWLGADTPFAVA 540
                 ******999667888889***********************.*************************************************99999888 PP

                 CSEEE...GGGHHHHHHHHTTE CS
   Sulfatase 291 eelvs...hiDlfptildlagi 309
                 + ++    h+ ++pt+l l+++
  EGE25509.1 541 NSPTAgfsHDAITPTLLNLFDV 562
                 88887777**********9985 PP

>> LupA  Legionella ubiquitin-specific protease A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.7e-05      0.31     116     161 ..     300     350 ..     294     357 .. 0.83
   2 ?   -2.4   0.0      0.88   3.1e+03      21      43 ..     457     479 ..     438     491 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.7e-05
                 --SS----GGGHHHHH.....HHHHHHHHHHTT--GGGS-HHHHHHHHHHT CS
        LupA 116 gpvhpqgdayscgdft.....cayshkkmkelgapkksyneelidtldnlg 161
                 g vh  g+  scg  t     c +s+    ++     +y+e++idtld lg
  EGE25509.1 300 GQVHNFGNVTSCGTSTaysvpCIFSYLGAEKYDVDTADYHENVIDTLDRLG 350
                 6778888889999766445558888888888888999*************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.88
                 EE---EETT-CCCCCCHHHHHHH CS
        LupA  21 evlavlnrydssaeaiiealasd 43 
                 e  +v+n yd++  a  + l++ 
  EGE25509.1 457 ERQTVINAYDNALLATDDFLKQT 479
                 55567788887777766666654 PP

>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  12.1    0.0014         5      14      82 ..      45     114 ..      38     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0014
      MARVEL  14 lvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfk.nsaftsilwplidliv 82 
                 l++ai+++ l+ ++  +++q++ s ++ +n+a+f+a ++++++ +ll+l ++  ++++ ++   ++ li+
  EGE25509.1  45 LFMAIVAIFLTTTANVTFFQQVMSVYPLANYALFIASLAVVLTGVLLLLLVLLgYRHTLKTVAICFILIA 114
                 78899999999999999*************************9998888777665555555555555554 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.3   0.00026      0.93       4      46 ..      81     120 ..      77     140 .. 0.78
   2 ?   -0.6   0.1      0.26   9.2e+02      26      40 ..     173     195 ..     148     276 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00026
     DUF4131   4 plalvllalllllllllllllrrrprrrvllllllllllallg 46 
                 +la+vl ++lllll+ll+++    + ++v+++++l++++a+++
  EGE25509.1  81 SLAVVLTGVLLLLLVLLGYR---HTLKTVAICFILIAAFAGHF 120
                 56777888888888888887...57788888888888887765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.26
     DUF4131  26 r........rprrrvllllllll 40 
                 +         +r  + l++l+l 
  EGE25509.1 173 SfgtlkaslMKRLVTYLVALALV 195
                 35554433322222221111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.38
# Mc/sec: 4515.18
//
Query:       EGE25510.1  [L=265]
Description: PAP2 superfamily protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-10   39.4   6.9    4.6e-10   39.4   6.9    1.9  3  PAP2      PAP2 superfamily
     0.0014   18.8   2.0     0.0014   18.8   2.0    2.4  3  DPM3      Dolichol-phosphate mannosyltransferase subunit 3 (D
  ------ inclusion threshold ------
      0.091   12.9   0.4      0.091   12.9   0.4    2.9  3  DUF4229   Protein of unknown function (DUF4229)
       0.25   11.0   1.3        5.2    6.7   0.1    2.8  2  SH3_6     SH3 domain (SH3b1 type)


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       1.2   5.5e+03       3      15 ..      18      30 ..      16      44 .. 0.58
   2 ?   -2.4   0.3      0.83   3.7e+03      87      98 ..      72      83 ..      56      93 .. 0.52
   3 !   39.4   6.9     1e-13   4.6e-10       3     133 ..     132     258 ..     130     261 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
        PAP2  3 lalllalalaall 15
                lal++++++a+++
  EGE25510.1 18 LALAVIVMTAVFI 30
                4555555555555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.83
        PAP2 87 lalillllavlv 98
                +++ ++ll++lv
  EGE25510.1 72 IVFGAYLLTTLV 83
                333333333333 PP

  == domain 3  score: 39.4 bits;  conditional E-value: 1e-13
        PAP2   3 lalllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvals 101
                 l++  +lal+ ll+  lK+l   p+P+ l  + ++ +  s +++  s++  ++fP  H++ +f l+ l++    + ++     +++ ++ +  + ++l 
  EGE25510.1 132 LYVFAVLALTPLLVATLKSLTHVPCPHELLIFAGDKPYLSLWQDILSQQRAKCFPAAHASSGFGLYGLAFVPALQHKRW----RYVILVSAIGWTMGLY 226
                 67778899999***************************9988887779999*********9999998877655555555....57888888899***** PP

        PAP2 102 RlylgvHflsDvlaGlliGialaalayrlvqk 133
                  + +g Hf+s++l+++++++++a  + +++++
  EGE25510.1 227 KMMIGDHFFSHTLVSMALAWFVASGLSAVFFT 258
                 **********************9877766655 PP

>> DPM3  Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.0   3.2e-07    0.0014      18      63 ..      42      88 ..      15     102 .. 0.75
   2 ?   -2.7   0.1       1.5   6.9e+03      20      58 ..     135     144 ..     130     165 .. 0.47
   3 ?   -2.2   0.2       1.1     5e+03      15      26 ..     218     229 ..     206     256 .. 0.49

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.2e-07
        DPM3 18 wlalllrlvslplskvqdevvpv.lPlwalvlfGayslatlgygvlt 63
                w+++ ++   l+ ++ + +++++ lP w+l++fGay+l+tl+++ + 
  EGE25510.1 42 WFYVEQGRWLLSKDQFVFSMLFYkLPKWLLIVFGAYLLTTLVWRQFI 88
                5555544443443455555554449******************9765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
        DPM3  20 alllrlvslplskvqdevvpvlPlwalvlfGayslatlg 58 
                 +++l l++                             l+
  EGE25510.1 135 FAVLALTP-----------------------------LL 144
                 33332222.............................22 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.1
        DPM3  15 lalwlalllrlv 26 
                 ++ w++ l++++
  EGE25510.1 218 AIGWTMGLYKMM 229
                 444444444433 PP

>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4       0.5   2.2e+03      14      26 ..      19      31 ..      16      43 .. 0.59
   2 ?   -0.5   0.3      0.31   1.4e+03      10      26 ..     134     150 ..     131     162 .. 0.63
   3 ?   12.9   0.4     2e-05     0.091      13      52 ..     218     259 ..     210     262 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.5
     DUF4229 14 ltavillvarlig 26
                ++avi++ a++i+
  EGE25510.1 19 ALAVIVMTAVFIE 31
                4556666665555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.31
     DUF4229  10 Lfvvltavillvarlig 26 
                 +f+vl++  llva l  
  EGE25510.1 134 VFAVLALTPLLVATLKS 150
                 56666666666665544 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 2e-05
     DUF4229  13 vltavillvarliglp..vpllvaallAlvvalplSmvllkk 52 
                 ++ + + l  ++ig +  ++ lv++ lA+ va  lS v++ k
  EGE25510.1 218 AIGWTMGLYKMMIGDHffSHTLVSMALAWFVASGLSAVFFTK 259
                 3334444445556666999*********************98 PP

>> SH3_6  SH3 domain (SH3b1 type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0012       5.2      22      45 ..      21      47 ..      17      51 .. 0.84
   2 ?    1.9   0.1     0.036   1.6e+02      38      51 ..     208     221 ..     205     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0012
                EE-TT-EEEEEEE-TT...SSEEEEE- CS
       SH3_6 22 alkagtPVlilhaSkD...gaWlfVet 45
                a+ ++t+V+i h S D    +W++Ve 
  EGE25510.1 21 AVIVMTAVFIEHGSVDvtiSSWFYVEQ 47
                56789***********55568***985 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.036
                 SSEEEEE-SS-EEE CS
       SH3_6  38 gaWlfVetsfasGW 51 
                 ++W +V   +a GW
  EGE25510.1 208 KRWRYVILVSAIGW 221
                 89************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2120.48
//
Query:       EGE25511.1  [L=117]
Description: ArsC family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-12   46.3   0.1      1e-11   44.7   0.1    1.8  1  ArsC      ArsC family


Domain annotation for each model (and alignments):
>> ArsC  ArsC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.1   5.6e-16     1e-11       1      64 []       6     115 ..       6     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 5.6e-16
                 EE-TT..........................................GCB-TTSHHHHHCT.CCCTTS...BHHHHHHHHHH-GGGB-S-EEEESSEEE CS
                 xxxxx..........................................xxxxxxxxxxxxxx.xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ArsC   1 Ygspn..........................................ellskrgttyreLn.ldkedl...sedellelilenpsLirRPivvdgkrlq 53 
                 Yg++n                                          ++++k+g tyr+L+  +k  l   + +++ e+   n+s+i+RPi++ g +  
  EGE25511.1   6 YGIKNcntmkkafdklnelgktyeffdykneqltldkfgkfvaifgdKVINKQGMTYRKLDdDAKAILngdDVSAMYEIVKTNQSMIKRPIILGGMKSV 104
                 77888888888888888888888888888899999999999999999**************5444444555677899999******************* PP

                 ESSSCCGGGGG CS
                 xxxxxxxxxxx RF
        ArsC  54 iGfneeeiraf 64 
                 iGf+++e++++
  EGE25511.1 105 IGFDDAEYEQI 115
                 ********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 997.92
//
Query:       EGE25512.1  [L=878]
Description: leucyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-70  236.2   0.1      3e-70  235.5   0.1    1.3  1  tRNA-synt_1_2   Leucyl-tRNA synthetase, Domain 2
    1.3e-66  225.2   1.1    2.4e-47  161.5   1.6    5.3  4  tRNA-synt_1     tRNA synthetases class I (I, L, M and V)
    7.5e-29  100.7   0.0    2.7e-18   65.9   0.0    4.7  5  tRNA-synt_1g    tRNA synthetases class I (M)
    6.3e-08   32.3   0.0     0.0025   17.2   0.0    2.3  2  tRNA-synt_1e    tRNA synthetases class I (C) catalytic domain
    9.3e-08   32.2   0.0    1.9e-07   31.2   0.0    1.5  1  Anticodon_1     Anticodon-binding domain of tRNA
    0.00018   20.6   0.0       0.73    8.7   0.0    2.8  2  tRNA-synt_1f    tRNA synthetases class I (K)
      0.003   17.5   1.5      0.095   12.7   0.1    2.4  2  DZR             Double zinc ribbon
     0.0035   16.7   3.5       0.63    9.5   0.1    3.1  3  zf-ribbon_3     zinc-ribbon domain
  ------ inclusion threshold ------
      0.045   13.8   0.0      0.095   12.7   0.0    1.6  1  DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domai
       0.13   12.7   0.1        1.9    8.9   0.0    2.6  2  GFA             Glutathione-dependent formaldehyde-activating
        2.3    8.4   5.6       0.59   10.3   0.2    2.7  3  Zn-ribbon_8     Zinc ribbon domain
          8    6.3  10.5        8.7    6.2   0.2    3.4  3  zinc_ribbon_2   zinc-ribbon domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.5   0.1     2e-73     3e-70       1     182 [.     227     413 ..     227     416 .. 0.93

  Alignments for each domain:
  == domain 1  score: 235.5 bits;  conditional E-value: 2e-73
  tRNA-synt_1_2   1 rnWIGrseGleiefk..veeseeklevfttrpdtlfGvtfvalapehplveklaekkkelaafieevkkksesereletkekeGvftglkaihPit 94 
                    +nWIGrs+G+e++f+  ++++++ l+vfttrpdt++Gv+++a+a+ehpl++++a++++++a+f++e+k+ s +e++++++ek G++tgl+a hPit
     EGE25512.1 227 QNWIGRSQGMELDFTysIDDHDAVLRVFTTRPDTIMGVSYLAVAAEHPLAQHAAKQNPAIAEFCAECKQGSVAEADIAKAEKVGINTGLTAKHPIT 322
                    6**********9986227777899************************************************************************ PP

  tRNA-synt_1_2  95 gekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikpedee..kkleeseeayte.egilvnsgefdglkskeakekiak 182
                    g+++p+wvanyvlm+yg+gavmavPahd+rDfeFa+kynlpi qvi  +++    ++++++++y + +g ++nsg +dgl++++a +++ +
     EGE25512.1 323 GTDVPVWVANYVLMSYGSGAVMAVPAHDERDFEFANKYNLPIPQVIDFKNKPsnYSTNQWQDWYSDkTGFCINSGILDGLSYHDAVTTVNE 413
                    ***********************************************88877224445799***99899***************9998876 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   1.6   1.6e-50   2.4e-47       2     353 ..      18     422 ..      17     430 .. 0.89
   2 !   25.4   0.0   2.7e-09     4e-06     417     558 ..     430     585 ..     427     588 .. 0.65
   3 !   28.6   0.0   2.8e-10   4.2e-07     562     599 ..     632     670 ..     625     673 .. 0.84
   4 ?   -2.3   0.0      0.62   9.3e+02      97     148 ..     680     733 ..     677     738 .. 0.77

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 1.6e-50
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  l+ +We ++ ++++ e++++  +++l    Py  G+lH+Gh+ + ++ d++ ry+r+kG+ev   +GwD  Gl+ e +  ++  a             
   EGE25512.1  18 LQTQWESDKRYHTNNETTDKPTRYMLSM-FPYPSGKLHMGHVRNYAITDVLSRYYRQKGYEVMQPMGWDAFGLPAENAAIANAVAPA----------- 103
                  6789**********77777777777766.68*******************************************9976544433333........... PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEv.eykdkk............ 184
                        +w    ++++r+q+k lG s+D++re  T  +e+    ++ f +l++kgl+y+    vnw++  +t+l++  v + +  +            
   EGE25512.1 104 ------KWTFDNIANMREQLKALGLSIDWSREFATCTPEYYRWEQWLFLQLYKKGLVYKKLATVNWDPVDHTVLANEQVvDGRGWRsgaivekrdipm 195
                  ......477788999*************************************************************9985555555888999999*** PP

  tRNA-synt_1 185 .......................................dalihvafpladkeevklviaTTtPeTllgdtavavnpeldyv..itkeklilaeallk 241
                                                         ++ +++++ ++d+++  l + TT+P T++g   +av++e   +  + k++  +ae   +
   EGE25512.1 196 yyfkitdyadellddlktleghwpkqvlsmqqnwigrsqGMELDFTYSIDDHDA-VLRVFTTRPDTIMGVSYLAVAAEHPLAqhAAKQNPAIAEFCAE 292
                  *************************************999999*****999998.9*******************99987777666777777777666 PP

  tRNA-synt_1 242 slvkkesekkiledergkeLegkevelplvnrkipiiaddyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea............ 327
                         e +i + e+    +g+++++p++++++p+ + +yv +  G+G+V   Pahde D+e ++kynl++++++d + + ++              
   EGE25512.1 293 CKQGSVAEADIAKAEKVGINTGLTAKHPITGTDVPVWVANYVLMSYGSGAVMAVPAHDERDFEFANKYNLPIPQVIDFKNKPSNYStnqwqdwysdkt 390
                  655555888*******************************************************************9887665555566899999999 PP

  tRNA-synt_1 328 ......aefeglkvfdarkkvveelkekglll 353
                        +  +gl++ da  +v e ++ekgl  
   EGE25512.1 391 gfcinsGILDGLSYHDAVTTVNEIITEKGLGQ 422
                  99998888999999999999999999998755 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 2.7e-09
  tRNA-synt_1 417 qdWciSRqrwWGhriplfvsketeevvvre.elkelvagreeeeaekkalekeakdkl....kkekgelekdedvlDvWFsSgswpfstlgypee... 506
                  +dW +SRqr+WG +ip+   +  + v v+e +l  +  + +  +++ + l+ ++ + l     k  +  e+++d++D+  +S+        +p+    
   EGE25512.1 430 RDWGVSRQRYWGCPIPMVNCEYCGTVPVDEaDLPVVLPTDVIPDGRGNPLK-NMPEFLqttcPKCGQPAERETDTFDTFVESSWY-AQRFVSPHDdsq 525
                  8***********************999877455555555566666665544.444455554534445689********9999655.444445776111 PP

  tRNA-synt_1 507 ..dteelkkffpadmlleGlDiirgWvarlillslaltgse......Pfkevlvhglvrd 558
                    +++  +k  p d ++ G+      +    ++   ++++       Pf ++l +g+v++
   EGE25512.1 526 miERTAADKWLPVDQYVGGVEHAVLHLLYARFFHKVMRDEGlvskdePFANLLAQGMVLA 585
                  12344555667888888888766554444333333333322445555*********9987 PP

  == domain 3  score: 28.6 bits;  conditional E-value: 2.8e-10
  tRNA-synt_1 562 rKmSKslgNvidpldvikkygadalRltli.lsdvgrdi 599
                   KmSKs+ N +dp+++i++ygad +Rl+ + +++  + +
   EGE25512.1 632 EKMSKSKNNGVDPQEIIEQYGADTVRLYTLfTAPADQTL 670
                  6**************************988566665555 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.62
  tRNA-synt_1  97 reefrekvrewkaeyaeeir.kqvkrlGvsvD.fdreylTldkeleeavkevfv 148
                   ++f++kv+  + e  + i+ +q ++l +  D  +++++ l  +++e++ ++ v
   EGE25512.1 680 PHNFIKKVWRTVGEHLSAIQnHQSNDLTINKDtLSKDAKNLRRKTHETIAKIDV 733
                  5789999*9999988776651577899999985689999999999998887755 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   1.8e-21   2.7e-18       5     135 ..      44     176 ..      41     180 .. 0.93
   2 ?    4.1   0.0     0.011        16     173     219 ..     185     231 ..     175     245 .. 0.83
   3 ?    2.9   0.0     0.025        37     219     238 ..     426     445 ..     409     452 .. 0.84
   4 ?   -1.6   0.0      0.59   8.8e+02     133     149 ..     484     500 ..     481     508 .. 0.79
   5 !   21.1   0.0   7.5e-08   0.00011     326     371 ..     632     677 ..     624     687 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 1.8e-21
                   E--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S..EEEETTSHHHHHH CS
  tRNA-synt_1g   5 talpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfd..kygrttseehkel 99 
                   + +pY++gklH+Gh++++ ++D+++Ry r++g+ev+   g D++G p e +A ++ v p++ + ++ ++++e++k l++s d      t + e ++ 
    EGE25512.1  44 SMFPYPSGKLHMGHVRNYAITDVLSRYYRQKGYEVMQPMGWDAFGLPAENAAIANAVAPAKWTFDNIANMREQLKALGLSIDwsREFATCTPEYYRW 140
                   568*************************************************************************999888323345888999*** PP

                   HHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG- CS
  tRNA-synt_1g 100 vqeifkklkekgliyekeieqlycpkderflpdryv 135
                    q +f +l++kgl+y+k  ++ ++p d++ l++++v
    EGE25512.1 141 EQWLFLQLYKKGLVYKKLATVNWDPVDHTVLANEQV 176
                   *******************************99886 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.011
                   ....EEE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHH CS
  tRNA-synt_1g 173 gskpevketehlffklskfekklkewieeeekeleenvkkivkewlk 219
                   g+  e ++   ++fk+ +++++l + +++ e +++++v ++ ++w+ 
    EGE25512.1 185 GAIVEKRDIPMYYFKITDYADELLDDLKTLEGHWPKQVLSMQQNWIG 231
                   55566677778****************999999************95 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.025
                   HT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 219 kegLkdlaisrdldwGipvP 238
                   +  L+d+ +sr+  wG p+P
    EGE25512.1 426 QYRLRDWGVSRQRYWGCPIP 445
                   5679***************9 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.59
                   GG-EE........-TTS CS
  tRNA-synt_1g 133 ryvegtCPkckseearg 149
                   ++++ tCPkc++   r+
    EGE25512.1 484 EFLQTTCPKCGQPAERE 500
                   67899*****9877665 PP

  == domain 5  score: 21.1 bits;  conditional E-value: 7.5e-08
                   ------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHHH CS
  tRNA-synt_1g 326 kKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswedf 371
                   +K+SkS++++v+++e++e++ ad++R y + +ap+++ l++s + +
    EGE25512.1 632 EKMSKSKNNGVDPQEIIEQYGADTVRLYTLFTAPADQTLEWSDSAL 677
                   7*******************************99998888877655 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.7e-06    0.0025      22      49 ..      52      79 ..      39      82 .. 0.93
   2 !   12.6   0.0   4.4e-05     0.065     251     297 ..     631     678 ..     623     682 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-06
                  --BHHHHHHHHHHHHHHHHHHHTT-EEE CS
  tRNA-synt_1e 22 ashlGhaRslvafDilrrilqalgYdvq 49
                  + h+Gh+R++ ++D+l r+ +++gY+v+
    EGE25512.1 52 KLHMGHVRNYAITDVLSRYYRQKGYEVM 79
                  68************************96 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.4e-05
                   TBE--TTTT---BHHHHHTTS-HHHHHHH.HHSS-TTS-EEE-HHHHH CS
  tRNA-synt_1e 251 gekmsksLknfitikdvlkkfdprqlRll.llsahyrsqldfkeelle 297
                    ekmsks +n +  +++++++ + ++Rl+ l +a   ++l++++++l+
    EGE25512.1 631 IEKMSKSKNNGVDPQEIIEQYGADTVRLYtLFTAPADQTLEWSDSALK 678
                   49*************************872667788899999999986 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.2e-10   1.9e-07       2     147 ..     718     838 ..     717     844 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.2e-10
  Anticodon_1   2 rwilselnklvkevteayee.yrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgk 98 
                  + + +++++++++++ ++ e + +n+ +s+l+e+     c+ +  + kp+ +++         ++ +e++ +ll ll+  +P++ E+l     e l+ 
   EGE25512.1 718 KNLRRKTHETIAKIDVSLGEhLALNTPVSSLMEL-----CNEIASF-KPTDNNDI--------AARHEAIVALLTLLSLYAPHVGEYLL----EALKI 797
                  567899*************99************6.....5555444.67665544........5779**********************....66555 PP

  Anticodon_1  99 kesimlaewpe.kaeelekeleeeevellkeivkairklrselkikpsse 147
                  +     +++p  +++ l   + +  +++   +v++++k+r++++++  ++
   EGE25512.1 798 DART--QAFPVlDKSAL---I-NDTITM---VVQVNGKVRGKMEVASGTD 838
                  5545..99**8777444...2.224556...**************98877 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0005      0.75      32      69 ..      48      85 ..      22      88 .. 0.81
   2 !    8.7   0.0   0.00049      0.73     275     314 ..     627     666 ..     624     674 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0005
  tRNA-synt_1f 32 spSGliHiGnlrevltadlvaralrkrgeevrlilisD 69
                   pSG++H+G +r+ + +d++ r +r++g ev + + +D
    EGE25512.1 48 YPSGKLHMGHVRNYAITDVLSRYYRQKGYEVMQPMGWD 85
                  59*************************99987666665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00049
  tRNA-synt_1f 275 llkggekmssSkGnvltledwlevaepevlrflilrrkPk 314
                   ++ + ekms+Sk n++ +++++e +  +++r+++l + P 
    EGE25512.1 627 TIGKIEKMSKSKNNGVDPQEIIEQYGADTVRLYTLFTAPA 666
                   667788*************************999887776 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.055        82       7      20 ..     282     295 ..     276     306 .. 0.79
   2 !   12.7   0.1   6.3e-05     0.095      15      41 ..     449     500 ..     443     504 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.055
         DZR   7 elppdarfCseCgt 20 
                 ++p+ a+fC eC++
  EGE25512.1 282 QNPAIAEFCAECKQ 295
                 67888889999975 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6.3e-05
         DZR  15 CseCgtklkavaa.........................edrCpsCgekvdpe 41 
                 C++Cgt +  +a+                         +++Cp+Cg++++ e
  EGE25512.1 449 CEYCGTVPVDEADlpvvlptdvipdgrgnplknmpeflQTTCPKCGQPAERE 500
                 ******9877666999999****************************98766 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.88   1.3e+03      17      23 ..     288     294 ..     287     302 .. 0.75
   2 !    6.4   0.1    0.0041       6.1       2      13 ..     446     458 ..     445     461 .. 0.69
   3 !    9.5   0.1   0.00042      0.63      16      25 ..     487     496 ..     480     501 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.88
  zf-ribbon_3  17 nvCpyCG 23 
                   +C+ C 
   EGE25512.1 288 EFCAECK 294
                  5788885 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0041
  zf-ribbon_3   2 tvrCPnCGa.pls 13 
                  +v+C +CG+ p++
   EGE25512.1 446 MVNCEYCGTvPVD 458
                  7777788876666 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00042
  zf-ribbon_3  16 dnvCpyCGtk 25 
                  +++Cp+CG++
   EGE25512.1 487 QTTCPKCGQP 496
                  5566666653 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.4e-05     0.095       1      14 [.     489     502 ..     489     513 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.4e-05
  DNA_ligase_ZBD   1 hCPvCGsavvReeg 14 
                     +CP CG++++Re +
      EGE25512.1 489 TCPKCGQPAERETD 502
                     7**********976 PP

>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0012       1.9      39      91 ..     277     330 ..     260     332 .. 0.80
   2 ?    0.2   0.0      0.63   9.5e+02      49      63 ..     487     501 ..     478     509 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
         GFA  39 ktadsgnkvtrsfCpeCgsplyse.esaapevvivrvGtlddpeklkpeaeift 91 
                 ++a+++n++  +fC eC    ++e   a+ e v +++G+ +++    +++ +++
  EGE25512.1 277 QHAAKQNPAIAEFCAECKQGSVAEaDIAKAEKVGINTGLTAKHPITGTDVPVWV 330
                 45789999999********9999956667789******9999877777777776 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.63
         GFA  49 rsfCpeCgsplysee 63 
                 ++ Cp+Cg p   e+
  EGE25512.1 487 QTTCPKCGQPAERET 501
                 689*****9987554 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.9   2.8e+03      24      35 ..     284     297 ..     276     300 .. 0.67
   2 ?   -2.2   0.1       3.1   4.7e+03      28      34 ..     448     454 ..     444     458 .. 0.62
   3 ?   10.3   0.2    0.0004      0.59      21      38 ..     482     499 ..     474     500 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.9
  Zn-ribbon_8  24 aplta.CPeCgs.e 35 
                  ++  + C eC++  
   EGE25512.1 284 PAIAEfCAECKQgS 297
                  45566799998755 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.1
  Zn-ribbon_8  28 aCPeCgs 34 
                   C  Cg 
   EGE25512.1 448 NCEYCGT 454
                  4777776 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0004
  Zn-ribbon_8  21 isdapltaCPeCgsevrr 38 
                  + +  +t+CP+Cg++++r
   EGE25512.1 482 MPEFLQTTCPKCGQPAER 499
                  44555788******9998 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3     0.083   1.2e+02       7      19 ..     281     293 ..     281     297 .. 0.85
   2 ?    2.5   0.8     0.085   1.3e+02      16      21 ..     449     454 ..     448     455 .. 0.93
   3 ?    6.2   0.2    0.0058       8.7      15      22 ..     489     496 ..     487     504 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.083
  zinc_ribbon_2   7 aelqdnakFCpyC 19 
                    ++++  a FC +C
     EGE25512.1 281 KQNPAIAEFCAEC 293
                    689999******* PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.085
  zinc_ribbon_2  16 CpyCGt 21 
                    C+yCGt
     EGE25512.1 449 CEYCGT 454
                    *****8 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0058
  zinc_ribbon_2  15 FCpyCGtp 22 
                     Cp+CG p
     EGE25512.1 489 TCPKCGQP 496
                    57777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (878 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 5518.11
//
Query:       EGE25513.1  [L=168]
Description: hypothetical protein EA1_06253 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1234.36
//
Query:       EGE25514.1  [L=347]
Description: DNA polymerase III, delta subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-08   34.8   0.2    2.3e-08   34.0   0.2    1.3  1  DNA_pol3_delta   DNA polymerase III, delta subunit
     0.0025   17.7   0.3      0.082   12.8   0.0    2.5  2  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do
  ------ inclusion threshold ------
       0.14   12.5   2.6       0.66   10.3   0.1    3.0  3  DNA_pol3_delt_C  Processivity clamp loader gamma complex DNA 


Domain annotation for each model (and alignments):
>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.2   3.9e-12   2.3e-08      37     172 ..      58     191 ..      42     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 3.9e-12
                     TTS-HHH.HTTTSTTTTSSSSEEEEEEE--.....TT-S-TTHHHHHHHHTTT--S...SEEEEEEES.S--HHHH...HHHHHTTTEEEEEE-- CS
  DNA_pol3_delta  37 lnedwiddvleecetlpffsdkrivvlknpklltkesklnekllkeLeeylsnlpe...dtlLiliapkklderkk...lvklLkkkatvveakt 125
                       ++w + v++e+ +l++f ++  ++l          k+++  l +L  +  + ++   + +Li  +p k d++ +    +kl++++  +++ + 
      EGE25514.1  58 SPKSWHE-VTQELISLSLFEESTAIILSGK------HKPDDAILSQLIDFAHDAKAgtsTHHLIWLLP-KQDKKSQntkAFKLFDQHGLIIHGTI 144
                     4567888.*******************988......66888888888888877654222678999999.4444444456**************** PP

                     --TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHH CS
  DNA_pol3_delta 126 lkeeelkkwiqkraqelglkiekealelLlelvennlsaikqelekL 172
                      +e+e +  + ++aq+ +l +++ a ++L+  +  +l++++q l  L
      EGE25514.1 145 QNESERRALLVAKAQDFKLSLTANAWQMLMGHTQHDLLTAYQTLWRL 191
                     ******************************************99777 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2     0.027   1.6e+02      77     111 ..     147     182 ..     139     203 .. 0.73
   2 !   12.8   0.0   1.4e-05     0.082      17      92 ..     222     296 ..     219     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.027
  DNA_pol3_gamma3  77 peeererlkelaeklsleqLqrlWqlll.kgieevk 111
                      ++e r+ l + a+ ++l+    +Wq+l+  ++ ++ 
       EGE25514.1 147 ESERRALLVAKAQDFKLSLTANAWQMLMgHTQHDLL 182
                      4566677778899999999999****9833444554 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.4e-05
  DNA_pol3_gamma3  17 rlldlleallegdaaaalaelreqyaaGadpvvvlrdLlellhqltllkvlpeaaedlslpeeererlkelaekls 92 
                      +++dl +al++++++++l+ ++ +y++ + p+++l  +   +h ++ lk  ++  ++l +  ++   +++la+++s
       EGE25514.1 222 SVFDLSDALIQRQPNQCLKIIDYLYQTNTAPSIILWAISKDIHLIAALKHGQD-PQKLGIWRNKVLNYQNLANNIS 296
                      589**********************************************9876.4556677777777788877776 PP

>> DNA_pol3_delt_C  Processivity clamp loader gamma complex DNA pol III C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.24   1.4e+03      69     116 ..      47      74 ..      27      90 .. 0.64
   2 ?    0.2   0.1      0.15   8.7e+02      40      65 ..     113     138 ..      78     176 .. 0.64
   3 ?   10.3   0.1   0.00011      0.66       2      83 ..     224     305 ..     223     336 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.24
                      HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTSTTSTHHHHHHHHHH CS
  DNA_pol3_delt_C  69 rrqllsealqrlsltqlrqavtlltrleltlkqdygqdvwaeleslsl 116
                                           +++ r++lt  + + ++v  el slsl
       EGE25514.1  47 N-------------------HQVMKRIDLTSPKSW-HEVTQELISLSL 74 
                      3...................345555555555443.556666666665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.15
                      HHHHHHHHHHHTTTS-HHHHHHHHTT CS
  DNA_pol3_delt_C  40 ellllvqlkrqaahtplralldkhrv 65 
                       + ll +  +++ +t    l+d+h +
       EGE25514.1 113 LIWLLPKQDKKSQNTKAFKLFDQHGL 138
                      33455566777888888899999854 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00011
                      HHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHTT-CCHHHHHHHHHHHS-HH CS
  DNA_pol3_delt_C   2 fhwvdallagkskralhilqqlrlegsepvillrtlqrellllvqlkrqaahtplralldkhrvwqnrrqllsealqrlslt 83 
                      f   dal++ + +++l+i++ l   ++ p i+l ++ +++ l+  lk  +    l    +k   +qn  + +s+ +    lt
       EGE25514.1 224 FDLSDALIQRQPNQCLKIIDYLYQTNTAPSIILWAISKDIHLIAALKHGQDPQKLGIWRNKVLNYQNLANNISDGMISHWLT 305
                      56679******************************************98777777666666666777777666665544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2659.07
//
Query:       EGE25515.1  [L=344]
Description: M35-like porin protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-24   86.7  16.5    3.2e-24   86.3  16.5    1.1  1  Porin_4   Gram-negative porin
    3.1e-06   26.9  13.2    0.00014   21.4  13.0    3.1  1  Porin_1   Gram-negative porin
  ------ inclusion threshold ------
      0.025   14.5   4.4        1.2    9.0   1.3    3.4  4  DUF2490   Protein of unknown function (DUF2490)


Domain annotation for each model (and alignments):
>> Porin_4  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3  16.5   5.4e-28   3.2e-24      12     308 ..      23     323 ..      19     327 .. 0.73

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 5.4e-28
     Porin_4  12 AaAqssVtlyGsidagva......yvdgsatg......ssadgatgfd.sgsrigftgsedldlGlg..lkasfeleagdn.................g 78 
                 A+A+   +lyG++ +g+a                    +s+++   ++ sgsrig++gse+l++  +  +k +++le++++                  
  EGE25515.1  23 AHAA--PELYGYASLGIAanhkktT------NkttnvsTSTTDRPYLYsSGSRIGLRGSEKLNDDYEvlYKLEYRLENDGDlrnekikqpdgtektvaK 113
                 8899..************6654432......12223336666667777799*************99988999999998886777888888888887755 PP

     Porin_4  79 agtsgarqayvglsg.gfGkvtlGrqdgafdeagvdlafesgsladtgtalsgvsgsagfdsrdsnsiiyyspkfgGftagasyafgeddntnglags. 175
                 + ++ ar++++g+++ ++G++++Gr+ ++   ++ ++  +sg ++++               r++n+i+y spk+ +++++a+y ++e++ t++++   
  EGE25515.1 114 TRNFEARDSWIGVKHkKYGTIKAGRMLSLDPYVRYTAYLASG-VDGV---------------RTNNTIAYESPKIKDVSFQAMYILDENKETDTIDRDg 196
                 56777*********************9997777765444444.3333...............779*************************996665444 PP

     Porin_4 176 ....vagdsddndafglgagya.fggvglavaaaysqgdneadadldawglgasvsl.ggfklgasyadaendaaaaaadadlygvgasytv..galtv 266
                     v+   +++d +++ga+ya fg    ++   y++ + +a        + ++++   + k+g+ y+++ ++++ +a + +  +vg++ +   +++t 
  EGE25515.1 197 ysllVK---KNTDTYNVGAAYAyFG----KAKTSYGKINYTA-------RVTGNYKInEDYKVGGIYQHVGYANDDSAKNNTEQAVGVALQHfkDKWTH 281
                 554343...3578999999999998....5555666545555.......56789999999999999996666554433333333355554444699999 PP

     Porin_4 267 gaaygnydd.agandadatsyglgatYnLskrtdlyaeyaytd 308
                 +a  + +++   ++++d   +  + + ++sk++++   ++y +
  EGE25515.1 282 TAHMNLVNNpS-GKKGDGFELIGAIDRDISKNVSAGMDITYGN 323
                 99999999954.4444444444458999999998877766654 PP

>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4  13.0   2.4e-08   0.00014      21     198 ..      56     238 ..      38     328 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.4e-08
                 TTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESS............SBTTCTTTC...EEEEEEEEEEETTTEEEEEEEEE-TTHHHHCTTTTSS CS
     Porin_1  21 eksedgddtyariGfKGetqindqLtgygqwEyevkvn............gtegesaqs...ktrlaFaGLkfgevGsldyGrnygvvydveawtdvlp 104
                 +++     +++riG++G++++nd+     ++Ey+++ +            gte   a++   + r +++G k++ +G++++Gr+ +  +    +t  l+
  EGE25515.1  56 TDRPYLYSSGSRIGLRGSEKLNDDYEVLYKLEYRLENDgdlrnekikqpdGTEKTVAKTrnfEARDSWIGVKHKKYGTIKAGRMLSL-DPYVRYTAYLA 153
                 3444467899***********************986541111111111114554433333347799*****************9985.44445555332 PP

                 SSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS.....SSTTT-BESEEEEEEEEEETT..EEEEEEEEEEEE-CHHC. CS
     Porin_1 105 efggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedtstnn.rnlkksngdgygvslsYeveGfalsvagayarsdrtakqkl 198
                   g d           r+n    Y+++    ++    + l ++ + ++   +    l k+n d+y v+++Y + G+a +  g+++  +r++ +  
  EGE25515.1 154 -SGVDG---------VRTNNTIAYESPKIKDVSFQAMYILDENKETDTIDRDGySLLVKKNTDTYNVGAAYAYFGKAKTSYGKINYTARVTGNYK 238
                 .22233.........36677788*****999988888888877775555444456667*****************88888888888777766432 PP

>> DUF2490  Protein of unknown function (DUF2490)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.039   2.3e+02      10      49 ..      73     130 ..      68     151 .. 0.68
   2 ?   -2.6   0.0      0.75   4.5e+03     149     183 ..     155     189 ..     152     192 .. 0.76
   3 ?    9.0   1.3    0.0002       1.2      33      73 ..     226     267 ..     198     281 .. 0.75
   4 ?    2.6   0.0     0.019   1.1e+02      12      60 ..     274     326 ..     267     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.039
     DUF2490  10 kgkikkkwsvsleaqyRlrddls.................efnqillr.pglgyklnk 49 
                 + k+++++ v   ++yRl++d++                 +++ + +r  ++g k +k
  EGE25515.1  73 SEKLNDDYEVLYKLEYRLENDGDlrnekikqpdgtektvaKTRNFEARdSWIGVKHKK 130
                 6799999*************99876665555555555555444444444555555555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.75
     DUF2490 149 gfdqnRlyaglgyklnkkltlelgYmnqflnrsag 183
                 g+d +R+  ++ y++ k   +++  m+ ++++++ 
  EGE25515.1 155 GVDGVRTNNTIAYESPKIKDVSFQAMYILDENKET 189
                 66778888889999999888888888888777765 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0002
     DUF2490  33 efnqillrpglgyklnkklsvslgyay..eeekekkknntedr 73 
                 ++n+  +r++++yk+n++ +v+  y +  + +++  knnte+ 
  EGE25515.1 226 KINYT-ARVTGNYKINEDYKVGGIYQHvgYANDDSAKNNTEQA 267
                 44444.9***************999998755666667777765 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.019
     DUF2490  12 kikkkwsvsleaqyRlrddlsefnqillrpglgyklnkklsvslgyay....e 60 
                  +k+kw  ++ +++  + ++++ + + l  +++  ++k++s+++ ++y    +
  EGE25515.1 274 HFKDKWTHTAHMNLVNNPSGKKGDGFELIGAIDRDISKNVSAGMDITYgnfnY 326
                 6899999999999999999999999******************9999954331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2597.19
//
Query:       EGE25516.1  [L=38]
Description: hypothetical protein EA1_06268 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 334.34
//
Query:       EGE25517.1  [L=136]
Description: hypothetical protein EA1_06273 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1177.28
//
Query:       EGE25518.1  [L=118]
Description: hypothetical protein EA1_06278 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-06   26.2   0.0    1.4e-05   25.0   0.0    1.6  2  MliC      Membrane-bound lysozyme-inhibitor of c-type lysozym


Domain annotation for each model (and alignments):
>> MliC  Membrane-bound lysozyme-inhibitor of c-type lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   7.5e-10   1.4e-05       1      39 [.      30      71 ..      30      74 .. 0.95
   2 ?   -2.1   0.0      0.22   3.9e+03       6      15 ..      82      92 ..      81     106 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 7.5e-10
                EEECCCEEEEEEEE...CTTEEEEEEECCTEEEEEEEEETSS CS
        MliC  1 YqCdsgaevtvtyi...agdpsfavlrlggktltLaqavSaS 39
                Y+C++g++v v+yi   a+ ps+av +++gkt+++++ + aS
  EGE25518.1 30 YTCQGGKSVNVKYIfndADLPSKAVASFSGKTVGMPINLNAS 71
                9***************9999****************998888 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.22
                CEEEEEEEE.C CS
        MliC  6 gaevtvtyi.a 15
                g ++t+ yi a
  EGE25518.1 82 GYTMTADYIdA 92
                56788888842 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1026.22
//
Query:       EGE25519.1  [L=679]
Description: oligopeptide ABC transport system substrate binding protein OppA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-48  164.9  15.2    4.5e-48  164.1  15.2    1.3  1  SBP_bac_5    Bacterial extracellular solute-binding proteins,
  ------ inclusion threshold ------
      0.057   12.4   0.0       0.12   11.3   0.0    1.5  1  mRNA_stabil  mRNA stabilisation
        7.6    7.4   9.9       0.25   12.2   0.6    2.4  2  DUF3306      Protein of unknown function (DUF3306)


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.1  15.2   7.6e-52   4.5e-48       2     369 ..      81     517 ..      80     522 .. 0.89

  Alignments for each domain:
  == domain 1  score: 164.1 bits;  conditional E-value: 7.6e-52
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-..TTSS...B-SHHHHHHHHHHHHTGGGHCTTHHHHHC...........TCTEEEEEEEETTEEEEEESS CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkF..sDGt...pltAeDvvfsferlldpdtasgyasllee...........dqdikkveavddytvrftlkk 84 
                 +vp LA++ w+vs+Dg+tyt++LR+gv +  sDG+   p+tA+D+v  ++ ++d ++ + y    ++           + + ++v+a+dd+tv++tl++
  EGE25519.1  81 LVPSLATD-WSVSEDGLTYTYTLRDGVFWytSDGEeyaPVTAHDFVTGLKHAVDGKSDALYVVEDSVknlkaykegkvNWEEVGVKALDDKTVQYTLNQ 178
                 79******.7*******************999**8899*********************99988888***********99******************* PP

                 ETT.....TTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-...SHHHHHHHHHTTSSS CS
   SBP_bac_5  85 pna.....lfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvi..pdsdaraaalqsGeid 176
                 p +       +++l +v+a++    ++k +d+++  +     +G+Y l ++   + +++++n++Yw+++++++ ++++ +   +d+ +  +++ +Ge  
  EGE25519.1 179 PESywnskVTYSVLFPVNAKFL---QSKGKDFGALDPSSILVNGAYFLSAYASKSLMEFTKNDNYWDADNVHVQSVKLTYTdgSDPGSYYRNFDKGEF- 273
                 *999999889999999999999...58889989999999999***************************************777999***********. PP

                 EEESTTCCTHCHHHHHTTEEE..EEEEEEEEEEEEEETTT.................STGGGSHHHHHHHHHHS-HHHHHHHCTTTSS..EEESSS.ST CS
   SBP_bac_5 177 dvaepppsdieqlkeakglkv..lyespgggvtylafNtk.................kppfddkrvRqAlsyAiDreeivkavlegya..tpansl.lp 253
                  va ++p+d  ++ ++++++   +y    g+++y++fN +                 k+ + +k++RqA++ A+Dr ++  +  +  a  ++  ++ +p
  EGE25519.1 274 SVARLYPNDPTYQAASEKYQDniVYGLIDGTTYYFTFNLNrsafanstktpeqqesaKKAMLNKDFRQAVMFALDRAAYQAQTVGEEAktKALRNMlVP 372
                 8888999999998888888888888889************89999999999999998888888****************99997555522233444477 PP

                 TTSTTCCSCHCCCSHH........................SHHHHHHHHHHHTT-BCSSTSCEETC.EEEEEEEEETTSHHHHHHHHHHHHHHHH.TT. CS
   SBP_bac_5 254 psspgadeeykpayka........................ydpekAkklLkeaGykdgdggglrek.klkltlllasgspaekaiaeliqqqlkk.iG. 325
                 p++ +ad+e   +                           y+p+kAk+ +++a  +   +g+     +  l + + + ++ + + a+ ++q+ ++ +G 
  EGE25519.1 373 PTFVSADGEDFGQ--MvkkdlvgygtewqdvdlsdsqdglYNPQKAKEEFAKARQTLEAQGV---TfPIYLDFPIDQADSNRVQQAQSFKQSVEAsLGq 466
                 7777777665554..24589999999999999999999*******************98654...248888899999999999************9*** PP

                 .......EEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHH CS
   SBP_bac_5 326 .......ikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpf 369
                        i++e  t++++  y e+ +++d+d+++ gwg+dy dp ++l+ +
  EGE25519.1 467 eniiinvIETETSTYESQGYYAESPEQQDYDIMMAGWGPDYQDPRTYLDIM 517
                 **9999999999999888999999**********************99865 PP

>> mRNA_stabil  mRNA stabilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.1e-05      0.12      25      83 ..     135     193 ..     119     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.1e-05
  mRNA_stabil  25 sldllksivdtlkqlpieeekevdvekw.kklfdsawplvlpkeaskyWslrlkflklln 83 
                  + d l +++d++k+l++ +e +v++e+  +k++d ++   ++++ + yW++++ +   l+
   EGE25519.1 135 KSDALYVVEDSVKNLKAYKEGKVNWEEVgVKALDDKTVQYTLNQPESYWNSKVTYSV-LF 193
                  568999********************986899************9******998644.44 PP

>> DUF3306  Protein of unknown function (DUF3306)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   4.3e-05      0.25      52     109 ..     325     382 ..     311     384 .. 0.74
   2 ?   -1.5   3.1      0.74   4.4e+03       6      56 ..     636     665 ..     612     679 .] 0.30

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
     DUF3306  52 aeeaeaeeeletlpdvealtaesdfaaFlakgVseevkraALrklFadphfnvmdgld 109
                 ++++ a++ + + +  +a+    d aa+ a+ V ee k++ALr +   p+f   dg d
  EGE25519.1 325 EQQESAKKAMLNKDFRQAVMFALDRAAYQAQTVGEEAKTKALRNMLVPPTFVSADGED 382
                 23344444444445566888888****************************9999976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.74
     DUF3306   6 WsrRKsearapaeapepaqseeeaaeeeeaaeaeesveaaapeaeeaeeae 56 
                 W++ Ks+ +                 ++ a +  + v+++ ++a+     +
  EGE25519.1 636 WQSEKSASN-----------------AKYADSLVNRVKKSDTAASD----A 665
                 222222222.................22222211222221111111....1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1040  (0.0580066); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4849.13
//
Query:       EGE25520.1  [L=322]
Description: oligopeptide ABC transport system ATP-binding protein OppF [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-28   97.4   0.0    1.7e-27   96.6   0.0    1.4  1  ABC_tran   ABC transporter
    3.5e-08   33.9   0.1    7.3e-08   32.8   0.1    1.5  1  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    6.4e-08   32.3   0.1    9.4e-08   31.8   0.1    1.2  1  SMC_N      RecF/RecN/SMC N terminal domain
    0.00095   19.1   1.1       0.31   10.8   0.3    2.9  3  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
  ------ inclusion threshold ------
      0.026   14.3   0.0       0.05   13.3   0.0    1.4  1  IstB_IS21  IstB-like ATP binding protein
      0.026   14.3   0.2      0.051   13.3   0.2    1.4  1  AAA_29     P-loop containing region of AAA domain
      0.039   14.5   0.1      0.066   13.7   0.1    1.6  1  AAA_23     AAA domain
      0.046   13.1   1.0        4.7    6.5   0.2    2.3  2  ATPase     KaiC
      0.062   13.6   1.3        0.6   10.4   1.3    2.3  1  AAA_22     AAA domain
      0.067   11.8   0.5        1.4    7.4   0.1    2.2  2  AAA_13     AAA domain
       0.13   12.4   1.0        0.4   10.8   0.1    2.2  2  BBE        Berberine and berberine like


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0     1e-30   1.7e-27       1     136 [.      37     187 ..      37     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 1e-30
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS..--S-TTSBHHHH............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx..xxxxxxxxxxxx............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe..pqlfpeltvren............esdee 84 
                 +kn ++ +++ge+  +vGe+G+GK+t+ ++++gl + t G+i +dgk +++  +  +l  +i++++q+  ++l+++ tv               +  ++
  EGE25520.1  37 VKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNITGGQIIYDGKVISNqPKDAELICKIQMIFQDpaASLNERATVNYIiseglynfklykDNADR 135
                 5899*******************************************9999555667889********777777777766559*********9755555 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++k+ + +  ++l  +++++ p+++SgGq+qr+ +aral+ +p+++++DEp 
  EGE25520.1 136 LAKIKQMMAEVGLLPEHLTRYPHEFSGGQRQRIGIARALVMDPEFVIADEPI 187
                 666666666666777888899******************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   4.5e-11   7.3e-08       1      33 [.     239     271 ..     239     288 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 4.5e-11
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd 33 
                 vE++++++lf++p HPYTk Ll++vp +d+  +
  EGE25520.1 239 VEIAETEELFKNPIHPYTKSLLSAVPIPDPILE 271
                 8**************************998766 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   5.8e-11   9.4e-08      27     206 ..      50     227 ..      31     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 5.8e-11
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H.HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk.kevs 124
                  ++vG+ GSGK+ +  Ai   +G ++ +  +     ++i++ + k++   ++++++f+++ ++    +e+ +++  ++++g  ++k+ + ++ + ++++
  EGE25520.1  50 FSLVGESGSGKTTIGRAI---IGLNNITGGQIIYDGKVISN-QPKDAELICKIQMIFQDPAAS---LNERATVN-YIISEGLYNFKLYKDNADRlAKIK 140
                 4699**************...99877766666666789998.9999999***********999...34444444.45556666777777776655**** PP

                 HHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC-S CS
                 xxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 125 ellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemlekad 206
                 ++++++g+ +e       ++SgG+++ + +a  +         +++ De  +aLD + +++v +llk  +++k+  ++ i+++  +++  +
  EGE25520.1 141 QMMAEVGLLPEhltryphEFSGGQRQRIGIARALV----MDPEFVIADEPISALDVSVRAQVLNLLKkmQREKHLTYLFIAHDLSVVRFIS 227
                 **********9999999999******998876543....334599**********************555566788888988887777664 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.3   0.00019      0.31       4      25 ..      52      73 ..      50      96 .. 0.73
   2 ?    0.7   0.0      0.24   3.8e+02     125     161 ..     110     146 ..     106     155 .. 0.87
   3 ?    4.4   0.0     0.017        28     233     300 ..     156     221 ..     152     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
      AAA_21  4 liGpNgsGKSnLLdaldllarl 25
                l+G  gsGK+++ +a+ +l  +
  EGE25520.1 52 LVGESGSGKTTIGRAIIGLNNI 73
                8***************888443 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.24
      AAA_21 125 fslkelsvsepndlqfgkaltditsrawsllllldgl 161
                 +++++ ++++++ l+++k++ d+  r++++++++ + 
  EGE25520.1 110 NERATVNYIISEGLYNFKLYKDNADRLAKIKQMMAEV 146
                 6788999*************************99765 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.017
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpl 300
                  ++e+S G+++ ++++ al  ++    +++ DEp + L+ ++ + +l llk+ +r +    ++  H+ +
  EGE25520.1 156 YPHEFSGGQRQRIGIARALVMDP---EFVIADEPISALDVSVRAQVLNLLKKMQReKHLTYLFIAHDLS 221
                 57899*****9999999999999...99**********************8888766666677777665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.1e-05      0.05      30      75 ..      29      76 ..       5      84 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
   IstB_IS21 30 ldkrkvkeL.atlsfiekkenivllGpsGvGKshlaial.gveavrag 75
                  k+++ ++  +  fi+k e + l+G sG GK+ +  a+ g + ++ g
  EGE25520.1 29 EGKKRFVAVkNANFFINKGETFSLVGESGSGKTTIGRAIiGLNNITGG 76
                444555555245568********************9985377777655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   3.2e-05     0.051      19      38 ..      44      63 ..      36      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.2e-05
      AAA_29 19 idlkg.atlltGpsGsGKSTl 38
                i+ kg ++ l+G+sGsGK+T+
  EGE25520.1 44 IN-KGeTFSLVGESGSGKTTI 63
                55.444899***********9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.1e-05     0.066      19      39 ..      47      67 ..      16     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.1e-05
      AAA_23 19 kgltlItGpNGaGKTTildAi 39
                   + ++G+ G+GKTTi +Ai
  EGE25520.1 47 GETFSLVGESGSGKTTIGRAI 67
                34789************9998 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0029       4.7      17      37 ..      45      65 ..      42      73 .. 0.89
   2 ?    5.0   0.0     0.008        13     138     186 ..     192     239 ..     172     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0029
      ATPase 17 pegrvvlitGepGtGKtifal 37
                 +g++  ++Ge+G+GKt+++ 
  EGE25520.1 45 NKGETFSLVGESGSGKTTIGR 65
                6789999***********985 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.008
      ATPase 138 avaReilrqlvrvl.kklgvTailvsekssseeaaggygveefivdgviv 186
                   +R+++ +l++ + +++ +T ++++  + s  ++   +++  i +gviv
  EGE25520.1 192 VSVRAQVLNLLKKMqREKHLTYLFIAH-DLSVVRFISDRIAV-IYKGVIV 239
                 569***********9**********98.45556777777777.7777775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.3   0.00037       0.6       9      31 ..      51      73 ..      45     224 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00037
      AAA_22  9 vvtGesGtGKTtllrrlleqlde 31
                 ++GesG+GKTt  r +   +++
  EGE25520.1 51 SLVGESGSGKTTIGRAIIGLNNI 73
                589**********9998877754 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.03        49      23      41 ..      54      72 ..      50     102 .. 0.78
   2 ?    7.4   0.1   0.00087       1.4     528     579 ..     179     228 ..     170     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.03
      AAA_13 23 GwNGaGKTtLSrllrslel 41
                G  G+GKTt+ r++  l++
  EGE25520.1 54 GESGSGKTTIGRAIIGLNN 72
                788**********998844 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00087
      AAA_13 528 kivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkk 579
                 + v+ D P+S LD  +   v +l+k+   ++k+   lfi  H l+  + +++
  EGE25520.1 179 EFVIADEPISALDVSVRAQVLNLLKKMQ-REKHLTYLFIA-HDLSVVRFISD 228
                 67999*********************97.89*******95.88877776665 PP

>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.5   4.1e+03      19      32 ..      27      40 ..      25      45 .. 0.82
   2 ?   10.8   0.1   0.00024       0.4      13      32 ..     123     142 ..     113     143 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.5
                HGGGHHHHHHHHHH CS
         BBE 19 FggNferLvkvKtk 32
                Fg+  +r v vK++
  EGE25520.1 27 FGEGKKRFVAVKNA 40
                88888999999975 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00024
                 HHHHHHHGGGHHHHHHHHHH CS
         BBE  13 ewgerYFggNferLvkvKtk 32 
                  ++ + +++N +rL+k+K++
  EGE25520.1 123 LYNFKLYKDNADRLAKIKQM 142
                 578899************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2292.59
//
Query:       EGE25521.1  [L=348]
Description: oligopeptide ABC transport system ATP-binding protein OppD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-29  103.0   0.0    2.5e-29  102.5   0.0    1.2  1  ABC_tran     ABC transporter
    1.9e-10   41.1   0.3    8.2e-07   29.1   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    1.1e-09   38.7   0.0    2.2e-09   37.7   0.0    1.6  1  oligo_HPY    Oligopeptide/dipeptide transporter, C-terminal r
    4.9e-05   23.6   0.6    0.00077   19.7   0.6    2.2  1  AAA_22       AAA domain
    0.00034   20.1   0.0       0.37   10.2   0.0    2.4  2  TniB         Bacterial TniB protein
    0.00044   19.8   0.2     0.0011   18.5   0.2    1.6  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00047   20.6   0.1    0.00076   19.9   0.1    1.6  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.011   15.7   0.8       0.02   14.8   0.1    1.7  2  RsgA_GTPase  RsgA GTPase
      0.015   15.0   1.4        1.2    8.8   0.4    2.1  2  AAA_15       AAA ATPase domain
      0.018   14.8   0.1      0.035   13.8   0.1    1.5  1  AAA_29       P-loop containing region of AAA domain
      0.069   13.1   0.1       0.12   12.3   0.1    1.4  1  Alg14        Oligosaccharide biosynthesis protein Alg14 like
       0.07   12.9   0.1       0.77    9.5   0.0    2.2  2  IstB_IS21    IstB-like ATP binding protein
      0.072   13.1   0.1       0.15   12.1   0.1    1.5  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
      0.095   12.2   0.0       0.24   10.9   0.0    1.6  2  AAA_7        P-loop containing dynein motor region
       0.12   12.2   0.1        2.2    8.1   0.0    2.1  2  APS_kinase   Adenylylsulphate kinase
       0.17   11.9   0.0       0.41   10.6   0.0    1.7  1  AAA_5        AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   2.2e-32   2.5e-29       2     136 ..      28     186 ..      27     187 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 2.2e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG.....B-HHHCCHCEEEE-SS..--S-TTSBHHHH.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.......... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke.....qeleslrkeigvlpqe..pqlfpeltvren.......... 79 
                 +n+slkl+ege++a+vGe+G+GKS L k+++g+l++    ++G+il++g+dl++     + l++  ++i++++q+  ++l p +t++ +          
  EGE25521.1  28 RNISLKLHEGEILALVGESGSGKSVLTKTFTGMLENngriASGDILYRGQDLTKltnneDWLKIRGSKIATIFQDpmTSLSPIKTIGAQivevitkhqk 126
                 79********************************99899999999***********99999999***********99999*****9999*******999 PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                     e++ ++ ++++k+g+++ ++++ ++ p ++SgG++qr+++a al+++p++l++DEpt
  EGE25521.1 127 vsrkEAKIQAIDYMRKVGISN-PEKRFNDYPFEYSGGMRQRIVIAIALACRPDILVCDEPT 186
                 998888888************.77777899******************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.2   0.00036       0.4       2      83 ..      40     118 ..      39     142 .. 0.75
   2 !   29.1   0.0   7.3e-10   8.2e-07     228     302 ..     150     222 ..     119     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv 83 
                  +l+G  gsGKS L +++ ++   ++  + ++d+l +g++++k ++  d+  +++ ++++++ f++ ++  + + +++ ++v
  EGE25521.1  40 LALVGESGSGKSVLTKTFTGMLE-NNGRIASGDILYRGQDLTKLTNNEDWLKIRG-SKIATI-FQDPMTSLSPIKTIGAQIV 118
                 58****************99988.8888999999988888888888887776654.455555.6666666666666666666 PP

  == domain 2  score: 29.1 bits;  conditional E-value: 7.3e-10
      AAA_21 228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 ++ +  ++e S G+++   ++++ l+ ++  ++l+ DEp + L+  +++ +++llk+l++  +  +i+ TH+  ++
  EGE25521.1 150 KRFNDYPFEYSGGMRQR-IVIAIALACRP--DILVCDEPTTALDVTIQAQIIDLLKSLQQeYRFTIIFITHDLGVV 222
                 4455578999******9.55555554444..9***********************999999***********8876 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0     2e-12   2.2e-09       1      63 [.     238     300 ..     238     301 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 2e-12
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfale 63 
                 vE ++++++f +p+HPYT  Ll+s+p+l +   +l+ i+g++psl     G  Fa R ++a+e
  EGE25521.1 238 VEFASVNEIFYNPQHPYTWSLLSSLPQLVNDSGELYAIPGTPPSLYSPIVGDAFALRSEYAME 300
                 89******************************************9999999999988888876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.6   6.9e-07   0.00077       5      71 ..      37     121 ..      33     221 .. 0.57

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.9e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee...erpevv....fvtlpsstsskdl.lrellralglelka..............e 71 
                   il+++GesG+GK++l ++++  l++   ++         +    + +l++ +++ ++  ++++ +++++  +               
  EGE25521.1  37 GEILALVGESGSGKSVLTKTFTGMLENNGRIASgdiL----YrgqdLTKLTNNEDWLKIrGSKIATIFQDPMTSlspiktigaqivevI 121
                 6799********************9876666555552....232225555555566666445566666655555444444333333330 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0023       2.6      17      58 ..      21      60 ..       9      70 .. 0.72
   2 !   10.2   0.0   0.00033      0.37     109     160 ..     166     215 ..     155     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0023
        TniB 17 keilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarl 58
                k+il+ ++++  + ++ +   l lvG+s  GK+++ + F+ +
  EGE25521.1 21 KRILTAIRNISLKLHEGE--ILALVGESGSGKSVLTKTFTGM 60
                555555555555444444..689****************865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00033
        TniB 109 qqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 + v+++  ++++ +L+ DE   +l   ++ q +++ +lksL++e++ +i+ +
  EGE25521.1 166 RIVIAIALACRPDILVCDEPTTAL--DVTIQAQIIDLLKSLQQEYRFTIIFI 215
                 5577778899************99..6777889***************9976 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   9.7e-07    0.0011      25     205 ..      38     225 ..      26     239 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.7e-07
                 SEEEEEESTTSSHHHHHHHHHHHCTT....TTTT..TTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGer...sakk..lrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkev 118
                 ++ a+vG+ GSGKs l+     +L ++   ++     r ++l++l ++ ++  ++   +++ +f+++  +    ++  +i  ++++  + + k+ +ke+
  EGE25521.1  38 EILALVGESGSGKSVLTKTFTGMLENNgriASGDilYRGQDLTKLTNN-EDWLKIRGSKIATIFQDPMTS---LSPIKTIGAQIVEVITKHQKVSRKEA 132
                 57799***************9999754222222222488999999998.99999999*******999988...33444555555555555556666666 PP

                 -HHHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE..E-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
       SMC_N 119 tkkevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfiv..islreemleka 205
                 + + + + ++++gis           + SgG ++ + +a+ +A   ++p  + + De   aLD +  +++ +llk+ +++  f +  i+++ ++++  
  EGE25521.1 133 KIQAI-DYMRKVGISNPekrfndypfEYSGGMRQRIVIAIALA---CRPD-ILVCDEPTTALDVTIQAQIIDLLKSLQQEYRFTIifITHDLGVVASI 225
                 66555.4567777766566777777799***999888888877...4565.6789********************99999777550155555555544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   6.8e-07   0.00076       2      55 ..      17      67 ..      16     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.8e-07
      AAA_16  2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggif 55
                +  R++ l +++++  ++++g  e++ l+GesG+GKs l +++   le + g  
  EGE25521.1 17 FTVRKRILTAIRNISLKLHEG--EILALVGESGSGKSVLTKTFTGMLENN-GRI 67
                666888888888877667666..8****************9998655555.343 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.8e-05      0.02      85     125 ..      22      63 ..       3      86 .. 0.77
   2 ?   -2.2   0.0       3.1   3.5e+03      46      72 ..     114     140 ..     107     147 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                  +  +++++++ +l++ ++ +lvG+SG GKS L +++++ le 
   EGE25521.1  22 RILTAIRNISLKLHEgEILALVGESGSGKSVLTKTFTGMLEN 63 
                  4456788888888888*****************999886554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.1
                  T-EEEEEEE-GGG--HHHHHHHHHHHH CS
  RsgA_GTPase  46 giepvivlnKiDlleeeeeleelkeel 72 
                  g+++v v++K   ++++e+  +  + +
   EGE25521.1 114 GAQIVEVITKHQKVSRKEAKIQAIDYM 140
                  456666778888777777433444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.4     0.001       1.2      14      55 ..      27      77 ..      26     155 .. 0.72
   2 ?    5.4   0.2     0.011        13     300     366 ..     162     219 ..     110     222 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.001
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekkn........k 55
                +++++++l e  +  l+G+ +sGKS +++ +  +l+n+ +          +
  EGE25521.1 27 IRNISLKLHEGeILALVGESGSGKSVLTKTFTGMLENNGRIAsgdilyrgQ 77
                67888888888899******************9999885544455555441 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.011
      AAA_15 300 GvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSp 366
                 G+++ +++++ ++ +        +++il+ +EP + L    q ++i+llk+l ++ +  +i+ TH  
  EGE25521.1 162 GMRQRIVIAIALA-C--------RPDILVCDEPTTALDVTIQAQIIDLLKSLQQEYRFTIIFITHDL 219
                 6666665555433.2........2579***************************9999999999975 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   3.2e-05     0.035      17      38 ..      32      53 ..      25      68 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.2e-05
      AAA_29 17 ieidlkgatlltGpsGsGKSTl 38
                +++++ ++  l+G+sGsGKS l
  EGE25521.1 32 LKLHEGEILALVGESGSGKSVL 53
                5666555999**********98 PP

>> Alg14  Oligosaccharide biosynthesis protein Alg14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00011      0.12      51     132 ..     126     215 ..     105     234 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
       Alg14  51 kaeeeevelvkipraReVgqsylss.....ifttllsllsaillvlrekrlpdvilvNGPgtcvpvvlaalllkllall...krskivyv 132
                 k++++e+++  i   R+Vg s  +      +f     + + i++ +     pd++++  P t++ v++ a +++ll  l   +r +i+++
  EGE25521.1 126 KVSRKEAKIQAIDYMRKVGISNPEKrfndyPFEYSGGMRQRIVIAIALACRPDILVCDEPTTALDVTIQAQIIDLLKSLqqeYRFTIIFI 215
                 444555667777777777666444311111444555555556666666667********************9999988777789999998 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00069      0.77      29      68 ..      18      58 ..       4      73 .. 0.81
   2 ?    0.9   0.0       0.3   3.3e+02     102     149 ..     170     219 ..     148     230 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00069
   IstB_IS21 29 sldkrkvkeLatlsf.iekkenivllGpsGvGKshlaialg 68
                 + kr+++++++ s  +++ e ++l+G sG GKs l+ ++ 
  EGE25521.1 18 TVRKRILTAIRNISLkLHEGEILALVGESGSGKSVLTKTFT 58
                5677888888877764788899**************98875 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.3
   IstB_IS21 102 alkrllkvdllilDd..lgllpldqaeaellfeviekryerrsiiitsnl 149
                 a++   ++d+l+ D+   +l    qa+  +l++ +++ y  + i it +l
  EGE25521.1 170 AIALACRPDILVCDEptTALDVTIQAQIIDLLKSLQQEYRFTIIFITHDL 219
                 56667889999999943345556678888999999999999999999776 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00013      0.15       9      50 ..      29      69 ..      20      71 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                HHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT--.---- CS
        TsaE  9 algkklakalgdvilLeGdLGaGKTtlvrglakalgve.evkS 50
                ++  kl +  g++++L G+ G+GK++l++ +   l+ + ++ S
  EGE25521.1 29 NISLKLHE--GEILALVGESGSGKSVLTKTFTGMLENNgRIAS 69
                44445555..899******************999987777776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00022      0.24      29      59 ..      33      63 ..       7      69 .. 0.79
   2 ?   -3.7   0.0       6.3     7e+03      20      50 ..     293     323 ..     284     331 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
       AAA_7 29 llknkkpvllvGptGtGKtviikdllkkldk 59
                 l+++  + lvG++G+GK+v++k+++  l++
  EGE25521.1 33 KLHEGEILALVGESGSGKSVLTKTFTGMLEN 63
                4566777889*************99988874 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.3
       AAA_7  20 vrysyllelllknkkpvllvGptGtGKtvii 50 
                 +r +y +e  ++++ p++ v +t  +Kt ++
  EGE25521.1 293 LRSEYAMEIDFEQRPPIINVSDTHWAKTWLL 323
                 6778888888999999999999988888765 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0     0.002       2.2       2      32 ..      37      67 ..      36      86 .. 0.87
   2 ?    1.8   0.0      0.18     2e+02      97     147 ..     205     253 ..     195     256 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.002
                -EEEEEESSTTSSHHHHHHHHHHHHHHTT-- CS
  APS_kinase  2 gvvvwltGlsgsGKstianalekkLvekgis 32
                g ++ l G sgsGKs +++++  +L+++g+ 
  EGE25521.1 37 GEILALVGESGSGKSVLTKTFTGMLENNGRI 67
                5678899******************999964 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.18
                 HCHTEEEEEEEE--HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS- CS
  APS_kinase  97 eealkfievfvdtplevceerDpkglYkkareGeikeftGidspYeaPenp 147
                 +++ +f  +f+  +l v ++   k   +   +Gei ef+ +++ + +P++p
  EGE25521.1 205 QQEYRFTIIFITHDLGVVASIADKV--AVMYAGEIVEFASVNEIFYNPQHP 253
                 4456899999999998877765554..3345799**********9999987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00036      0.41       3      27 ..      41      65 ..      39      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
                EEE--SSSSHHHHHHHGGGGBS--E CS
       AAA_5  3 lLvGppGtgKselaerlaaalnrev 27
                 LvG++G+gKs l++ +  +l+++ 
  EGE25521.1 41 ALVGESGSGKSVLTKTFTGMLENNG 65
                69****************9996554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2509.96
//
Query:       EGE25522.1  [L=308]
Description: oligopeptide transport system permease protein AmiD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-20   72.2  15.1    4.3e-20   72.2  15.1    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
    4.1e-09   36.3   0.9    4.1e-09   36.3   0.9    2.9  3  OppC_N        N-terminal TM domain of oligopeptide transport 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.6     0.084   7.6e+02      53      67 ..      46      60 ..      24     124 .. 0.62
   2 !   72.2  15.1   4.7e-24   4.3e-20       1     182 [.     125     305 ..     121     308 .] 0.96

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.084
  BPD_transp_1 53 ilpviillllsaapy 67
                  +l+++ ++ll++++y
    EGE25522.1 46 MLAILSVILLMSFIY 60
                  222222222222222 PP

  == domain 2  score: 72.2 bits;  conditional E-value: 4.7e-24
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+++G+l +   +k +dk+++ ++++++ +Ps++++i+l+       +lg +++  +++ ++++++++++ ir +++r ++ ++  a+r+lG ++ +
    EGE25522.1 125 GVVVGALWG--VSKSIDKIMLEIYNIISNVPSMLIIIVLT------YALGAGFWKlILAFCITGWIGVAFTIRVQIMRFRDLEYNLASRTLGTPKYK 213
                   677777777..999**************************......89*******99**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldpr 182
                   i +k +lP++l+ i+t+l   ++  +   ++l+f+g    +g+++++++lg+ +++ s          ++++ +lv++ l+l lv   l+++ dpr
    EGE25522.1 214 IAVKNLLPQILSIIMTLLSQMLPVYISYEAFLSFFG----IGLPTTTPSLGRLIANYSsnlttnaylfWIPLTVLVLVSLPLYLVGQNLADATDPR 305
                   ************************************....***************999************************************99 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.9   4.6e-13   4.1e-09       1      46 [.      28      74 ..      28      84 .. 0.87
   2 ?   -2.7   0.4      0.69   6.2e+03      27      36 ..     111     120 ..     111     124 .. 0.76
   3 ?   -2.3   0.9      0.49   4.4e+03      22      27 ..     157     162 ..     154     182 .. 0.56

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 4.6e-13
      OppC_N  1 slwqdawrrFkrNklAvvglvilllllliaifaPliaPydpqdli.q 46
                s+w+ + r+F++ k   v l+il ++ll++++ P+++Pyd +d++ +
  EGE25522.1 28 SYWKSVARQFFSKKSTYVMLAILSVILLMSFIYPMVVPYDFSDVSnI 74
                8***************************************9555533 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.69
      OppC_N  27 lliaifaPli 36 
                 +li+++a +i
  EGE25522.1 111 ILISVIATFI 120
                 5788888887 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.49
      OppC_N  22 illlll 27 
                 i+++l+
  EGE25522.1 157 IIIVLT 162
                 333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2372.52
//
Query:       EGE25523.1  [L=495]
Description: oligopeptide transport system permease protein AmiC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-34  117.6  14.3      5e-34  117.6  14.3    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3     0.057     1e+03      52      74 ..      12      35 ..       4      43 .. 0.55
   2 !  117.6  14.3   2.8e-38     5e-34       1     184 [.     293     487 ..     293     488 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.057
  BPD_transp_1 52 lilp.viillllsaapyvrlirra 74
                  + l+ v++++l++ + y+++ ++ 
    EGE25523.1 12 SLLSvVVVTALVYVIVYTLVPTSL 35
                  333335666666666666655554 PP

  == domain 2  score: 117.6 bits;  conditional E-value: 2.8e-38
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf............vilsilghlilpviillllsaapyvrlirraalrslpkdlve 85 
                   g+++G+l+a+++ + +dk+++  + ++l+lPs++l+ ++ ++                s++ ++ilp++il+++s++ +v+++rr  +++  +d+v+
    EGE25523.1 293 GLPIGMLMARFKDGLFDKVSTATMTFMLALPSIALIYVIRFAGsqltglpdsfpiLGASDIRSYILPALILGIFSLPYTVIWFRRYLVDIQASDWVR 389
                   89********************************999988777999*******99999*************************************** PP

  BPD_transp_1  86 aaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   +ara+G+s+ +i++k++++na+ p++ g++ ++++++gga+l+e++++ pG+g +l+++i + + ++i  g++++++++ ++ +l+ di ++l+dpr
    EGE25523.1 390 FARAKGLSESEIYKKHLFKNAMVPVVVGIPASIILAIGGATLTETIFAFPGMGKMLIDSIKAANNAMIV-GLTFIFTVLSIISLLLGDIAMALVDPR 485
                   *********************************************************************.*************************** PP

  BPD_transp_1 183 vr 184
                   ++
    EGE25523.1 486 IK 487
                   97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3708.76
//
Query:       EGE25524.1  [L=31]
Description: hypothetical protein EA1_06308 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      108  (0.00602376); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 262.97
//
Query:       EGE25525.1  [L=235]
Description: hypothetical protein EA1_06313 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-64  215.0   0.2    8.9e-64  214.8   0.2    1.0  1  QueH      Epoxyqueuosine reductase QueH
  ------ inclusion threshold ------
      0.048   13.3   0.0      0.075   12.7   0.0    1.2  1  CBF_beta  Core binding factor beta subunit


Domain annotation for each model (and alignments):
>> QueH  Epoxyqueuosine reductase QueH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.8   0.2   9.9e-68   8.9e-64       1     174 [.      35     209 ..      35     210 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.8 bits;  conditional E-value: 9.9e-68
        QueH   1 lLlhaCCapcssyvleklkeegfevtvffynpnihpeeEyekRleelkrlieelkielieedydleefleavkglekekekgeRCekCyelrLektael 99 
                 +Llh+CCapcs  v+e++ ++g+e+t++fynpnihp++Eye R++e+  ++++++i +i++dyd++++++++kg+e+++e+g+RC++C+++r+e+ta +
  EGE25525.1  35 VLLHSCCAPCSGEVMEAMIASGIEFTIYFYNPNIHPKKEYEIRKNENIAFAQKHGIPFIDADYDMDNWFARAKGMEQDPERGRRCTMCFDMRFERTALY 133
                 79************************************************************************************************* PP

        QueH 100 AkengfdaftttltiSplknaelineigeelae.eygvkflasdfkkkegykrsielskelglYrQkYCGCvfskk 174
                 A+e+gf ++t++l iS++kn+++in++g+++a+   +++++  +++k +g +r+ie+sk+ ++Y+Q+YCGC +s +
  EGE25525.1 134 AHEHGFPVITSSLGISRWKNMAQINDCGHRAAApYDDLEYWDFNWRKGGGSNRMIEISKREHFYQQEYCGCAYSLR 209
                 *******************************994559*************************************86 PP

>> CBF_beta  Core binding factor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.4e-06     0.075      50     113 ..      45     109 ..      38     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.4e-06
    CBF_beta  50 egeaeiafvatGtNlqlkfepasts.eeqekkpskeevdfekeaGkvhlkskfilNgvcvkvkGw 113
                  ge+  a++a+G+ +++ f++ +++ +++++  ++e++ f +++G  ++ +++ +   + + kG+
  EGE25525.1  45 SGEVMEAMIASGIEFTIYFYNPNIHpKKEYEIRKNENIAFAQKHGIPFIDADYDMDNWFARAKGM 109
                 5666779***********9876555378888899****************999999988888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1925.30
//
Query:       EGE25526.1  [L=118]
Description: hypothetical protein EA1_06318 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-29   99.8   6.0    8.4e-29   99.4   6.0    1.2  1  DUF4298          Domain of unknown function (DUF4298)
     0.0014   17.4   1.5     0.0016   17.2   1.5    1.1  1  AAA_13           AAA domain
     0.0015   18.7   1.1      0.002   18.4   1.1    1.3  1  CENP-Q           CENP-Q, a CENPA-CAD centromere complex subun
     0.0033   16.2   2.1     0.0044   15.8   2.1    1.1  1  Tektin           Tektin family
     0.0089   16.0   1.2     0.0089   16.0   1.2    1.8  2  DASH_Dad4        DASH complex subunit Dad4
  ------ inclusion threshold ------
      0.013   15.4   1.5      0.015   15.2   1.5    1.2  1  ALS2CR8          Amyotrophic lateral sclerosis 2 chromosomal 
      0.014   15.1   1.4      0.017   14.8   1.4    1.1  1  FRG1             FRG1-like domain
      0.018   14.9   2.1      0.048   13.5   2.1    1.8  1  Matrilin_ccoil   Trimeric coiled-coil oligomerisation domain 
       0.03   13.7   0.8       0.03   13.7   0.8    1.1  1  DUF4407          Domain of unknown function (DUF4407)
      0.032   14.0   4.2      0.079   12.7   3.4    1.9  2  DivIC            Septum formation initiator
      0.039   14.3   8.1      0.047   14.0   8.1    1.1  1  OmpH             Outer membrane protein (OmpH-like)
      0.052   12.7   0.5       0.06   12.4   0.5    1.5  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
      0.058   13.5   0.8      0.099   12.7   0.8    1.4  1  DcrB             DcrB
      0.081   13.2   0.6       0.12   12.6   0.6    1.3  1  CotJB            CotJB protein
       0.19   10.6   1.1        0.2   10.6   1.1    1.0  1  LMBR1            LMBR1-like membrane protein
       0.23   12.0   1.9       0.21   12.1   0.8    1.5  2  PNPase           Polyribonucleotide nucleotidyltransferase, R
       0.32   11.0   9.0       0.38   10.8   8.2    1.6  1  FlxA             FlxA-like protein


Domain annotation for each model (and alignments):
>> DUF4298  Domain of unknown function (DUF4298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   6.0     8e-32   8.4e-29       3      86 ..      19     112 ..      17     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 8e-32
                 HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSHHH............HHHHTS--SS.....--SSTTSSSHHHHHHHHHHHHHHHHHH CS
     DUF4298   3 emekildeisallqqLeealeqwkklqkklakLdeYYqseqw............redleasnkgelpqelkysvLSEDgiynalgdakelakellk 86 
                 em+k++d+i+al+qqL++al+q++klq+k+akLde+Yq+e++            ++dl+++nk+  +q+++ys+LSEDgi+n+l+da++++++l+k
  EGE25526.1  19 EMQKLNDDIQALTQQLKNALKQIQKLQDKHAKLDEFYQKECQslctayqngsisEQDLDYVNKK--AQTKGYSILSEDGIWNVLIDAEQTQVALIK 112
                 8***************************************************************..***************************998 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.5   1.5e-06    0.0016      98     165 ..      20      88 ..      15     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.5e-06
      AAA_13  98 ieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsals.ealkglkyeekfker 165
                  +kl+++i++l+++l++a +q+qk+++++ kl++ +++e++   + ++n  +s ++l +++++++ k +
  EGE25526.1  20 MQKLNDDIQALTQQLKNALKQIQKLQDKHAKLDEFYQKECQSLCTAYQNGSISeQDLDYVNKKAQTKGY 88 
                 67999************************************9999999999995667777777776655 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.1   1.9e-06     0.002      26      69 ..      19      62 ..       8      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-06
      CENP-Q 26 dfeklldekaaleaqLspelhslelLeaeiekeeralerdyeaL 69
                ++ kl d ++al +qL+ +l+++++L+    k+ + ++++ ++L
  EGE25526.1 19 EMQKLNDDIQALTQQLKNALKQIQKLQDKHAKLDEFYQKECQSL 62
                68899**********************************98887 PP

>> Tektin  Tektin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   2.1   4.2e-06    0.0044     325     363 ..      19      57 ..      15      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.2e-06
      Tektin 325 EvkeleetieaLkeklaeaeaslkaLertrleleediav 363
                 E+++l+++i+aL ++l++a +++++L++++++l+e  + 
  EGE25526.1  19 EMQKLNDDIQALTQQLKNALKQIQKLQDKHAKLDEFYQK 57 
                 9********************************986655 PP

>> DASH_Dad4  DASH complex subunit Dad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.2   8.4e-06    0.0089       7      58 ..       8      59 ..       4      70 .. 0.84
   2 ?   -2.8   0.1       5.9   6.2e+03       6      16 ..     104     114 ..     103     117 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.4e-06
   DASH_Dad4  7 eqqsalLsRIiknvekLnesvvelnkeleeinkkNknvel.vsqlwenYqrnv 58
                +q+ ++L R+i+ ++kLn+ ++ l ++l+++ k+ ++++   ++l e Yq+  
  EGE25526.1  8 HQHHDILGRLIE-MQKLNDDIQALTQQLKNALKQIQKLQDkHAKLDEFYQKEC 59
                6899*******7.9*****************9999998752556667777665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.9
   DASH_Dad4   6 eeqqsalLsRI 16 
                 e++q al++ +
  EGE25526.1 104 EQTQVALIKQL 114
                 67777776654 PP

>> ALS2CR8  Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   1.5   1.5e-05     0.015     134     185 ..       6      58 ..       4      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
     ALS2CR8 134 seHkgHpivgeaaelreevderivekireltekglkkvsemrr...hlkafvtde 185
                 ++H++H+i g   e  ++++++i  ++ ++++++lk++++++    +l++f ++e
  EGE25526.1   6 TSHQHHDILGRLIE-MQKLNDDIQ-ALTQQLKNALKQIQKLQDkhaKLDEFYQKE 58 
                 79*********988.599999995.678899999999999988666788887665 PP

>> FRG1  FRG1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.4   1.6e-05     0.017     131     186 ..      24      82 ..       8      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
        FRG1 131 vedreklrekeskyvkkfqkiqdkklrld...kedvkrlkkarkeGnlhEvlLDrrvkm 186
                 ++d + l+++ ++  k+ qk+qdk+ +ld   +++ ++l  a ++G++ E  LD   k 
  EGE25526.1  24 NDDIQALTQQLKNALKQIQKLQDKHAKLDefyQKECQSLCTAYQNGSISEQDLDYVNKK 82 
                 5566778899999*************999444599999****************87665 PP

>> Matrilin_ccoil  Trimeric coiled-coil oligomerisation domain of matrilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.1   4.5e-05     0.048      19      44 ..      22      47 ..      17      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.5e-05
                    HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Matrilin_ccoil 19 kVeseiqaLtqkLeavtkRlealEnk 44
                    k +++iqaLtq+L++  k +++l++k
      EGE25526.1 22 KLNDDIQALTQQLKNALKQIQKLQDK 47
                    6789*******************987 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   2.8e-05      0.03     130     182 ..      22      69 ..       4     114 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
     DUF4407 130 altaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...gtgttgvaGkg 182
                 +l++++++l++q++++ ++i++++++ ++l + +qke++  +   +        +g
  EGE25526.1  22 KLNDDIQALTQQLKNALKQIQKLQDKHAKLDEFYQKECQSLCtayQ--------NG 69 
                 3788999999999999999999999999999999999997773332........22 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.4   7.5e-05     0.079      16      53 ..      17      52 ..      13      59 .. 0.88
   2 ?   -0.6   0.0       1.1   1.1e+03      52      64 ..      74      86 ..      65      99 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.5e-05
                XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC 16 llaykqlkqeiaalqaelaklkaeneeLeaevkdLksd 53
                l  +++l+ +i+al+++l++  +++++L+++ ++L  d
  EGE25526.1 17 LIEMQKLNDDIQALTQQLKNALKQIQKLQDKHAKL--D 52
                67899*************************99999..3 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
                XXXXXXXXXXXXX CS
       DivIC 52 sdedyieerARse 64
                +d dy+ ++A  +
  EGE25526.1 74 QDLDYVNKKAQTK 86
                5677888877644 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   8.1   4.5e-05     0.047      34     116 ..      19      93 ..      16     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEE CS
        OmpH  34 eleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinkaikevakekgydlvld 116
                 e++++++++q+l ++l+    +    ++ q+lq+k ++l +++q++ q l  + q    +i ++  + +++ a++kgy++  +
  EGE25526.1  19 EMQKLNDDIQALTQQLK----N--ALKQIQKLQDKHAKLDEFYQKECQSLCTAYQN--GSISEQDLDYVNKKAQTKGYSILSE 93 
                 67778888888888885....3..5678899**********666666999999955..7899****************98755 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   5.7e-05      0.06      23      54 ..       8      39 ..       5     114 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.7e-05
                     -S-BTTTBTS--HHHHHHHHHHHHHCT--EEE CS
  Glyco_hydro_2_C 23 HedadrrGraideellvkDlkllkqlniNavR 54
                     H+++d+ Gr i++++l  D++ l q   Na +
       EGE25526.1  8 HQHHDILGRLIEMQKLNDDIQALTQQLKNALK 39
                     *************************9999875 PP

>> DcrB  DcrB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8   9.4e-05     0.099      39      86 ..      20      69 ..      15      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.4e-05
                TS-HHHHHHHHHHHHHHHSTT-EEEEEEEEEET...TEEEEEEEEEEEET CS
        DcrB 39 getleeylerqlkqlrkrlkgfqlleekpatlga..glpaeelevtyrkk 86
                 ++l++ ++ + +ql++ lk+ q l++k a+l++  +++++ l + y+++
  EGE25526.1 20 MQKLNDDIQALTQQLKNALKQIQKLQDKHAKLDEfyQKECQSLCTAYQNG 69
                57788889999**********************99889999999999986 PP

>> CotJB  CotJB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   0.00012      0.12      28      70 ..      35      80 ..      26      83 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
       CotJB 28 kealelfnkyskkrkelkkeYeekygPLtldgvses...kewkWve 70
                k+al++ +k+++k  +l + Y+++++ L++  ++ s   +  ++v+
  EGE25526.1 35 KNALKQIQKLQDKHAKLDEFYQKECQSLCTAYQNGSiseQDLDYVN 80
                79***************************99888776666666665 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.1   0.00019       0.2     198     291 ..      10     107 ..       4     118 .] 0.61

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
       LMBR1 198 ldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklks.......nenkteeslaklekqlikalqkrer 289
                 + + l +l +e +kln++ +  +++l++ lk+++kl+++  + d+   y +e+ + + +  +  +++       ++ +t+ + + +e  +++ l + e+
  EGE25526.1  10 HHDILGRL-IEMQKLNDDIQALTQQLKNALKQIQKLQDKHAKLDE--FYQKECQSLCTAYQNGSISEqdldyvnKKAQTKGYSILSEDGIWNVLIDAEQ 105
                 55556666.899**************************9999995..4444555544443333333344445532222444444444445555554444 PP

       LMBR1 290 te 291
                 t+
  EGE25526.1 106 TQ 107
                 44 PP

>> PNPase  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.8    0.0002      0.21       4      62 ..      25      82 ..      22      87 .. 0.79
   2 ?   -2.6   0.0         8   8.4e+03      62      69 ..     109     116 ..     101     118 .] 0.54

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
                HHHHTTTHHHHHHHTTS.SSHHHHHHHHHHHHHHHHHHHH...HHSTTS-HHHHHHHHHH CS
      PNPase  4 ekvaelaeerisealti.teKqeRyaaldeikekvveafaaeleeedeedekeikeifka 62
                +++++ +++++++al++ ++ q+  a+lde ++k  + + +++ +++ ++e++++++ k+
  EGE25526.1 25 DDIQA-LTQQLKNALKQiQKLQDKHAKLDEFYQKECQSLCTAY-QNGSISEQDLDYVNKK 82
                55555.4789*****99455599*****************888.5569999999888776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8
                 HHHHHHHH CS
      PNPase  62 alekkvvR 69 
                 al k++vR
  EGE25526.1 109 ALIKQLVR 116
                 34455555 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   8.2   0.00036      0.38      13      49 ..      21      57 ..      15      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00036
        FlxA 13 sgsasqiasLqkQiknlqkqLkelsesdeltkeekkk 49
                ++ +++i++L++Q+kn+ kq+++l+++ ++ +e  +k
  EGE25526.1 21 QKLNDDIQALTQQLKNALKQIQKLQDKHAKLDEFYQK 57
                677899********************96666663333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2898  (0.161638); expected 358.6 (0.02)
Passed bias filter:                     1326  (0.0739584); expected 358.6 (0.02)
Passed Vit filter:                       214  (0.011936); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 927.60
//
Query:       EGE25527.1  [L=822]
Description: heme utilization protein HumA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-39  134.5   3.6      1e-38  134.4   3.0    1.3  1  TonB_dep_Rec  TonB dependent receptor
    5.8e-13   49.4   1.8    1.6e-12   48.0   1.1    2.0  2  Plug          TonB-dependent Receptor Plug Domain
    0.00025   20.1   2.9    0.00025   20.1   2.9    2.0  3  OMP_b-brl_3   Outer membrane protein beta-barrel family
  ------ inclusion threshold ------
       0.72   10.0  10.9      0.035   14.2   2.5    2.9  3  OMP_b-brl     Outer membrane protein beta-barrel domain
        3.5    7.5  15.5        7.5    6.5  15.5    1.5  1  DUF2796       Protein of unknown function (DUF2796)


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   3.0   2.9e-42     1e-38      53     470 .]     345     821 ..     296     821 .. 0.71

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 2.9e-42
                   CCEEECECCEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEEEEE......EEEEEEEE......CEEEEEEEEEEEEEEEEEEE...EE.EEEE CS
  TonB_dep_Rec  53 tdnkrlrlgydydlddnlsw.klslraglnYsstdgdsdynnsglgg......grsynrdn......dyyglgnvlaaeldlngdlw...fG.snla 132
                    ++++ +   d+++d ++ w +l+ +    Y+ ++g+ + ++ g++         +y  d+      +++ ++  + ++l+ +++     +G  + +
    EGE25527.1 345 AHDHDHDHEHDHEHDHGKPWiDLKMKR---YD-VQGQINAPFAGIDKirasmgKVDYHHDEidggekTSFFDNQANVWRLEASHTPIhtpMGkFSGV 437
                   224555555566678888898888885...66.4444444444555566666666665555666655333344444444444666436775554445 PP

                   EEEEEEEEEE.....EECCBEESCCTCCSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTC.............................. CS
  TonB_dep_Rec 133 dgldyrklsd.....dgydaydplnpsgdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvf.............................. 194
                   +g+ y  +++     + y   + ++ + +   + ++++ +++   ++k +d+lt+++++R +  + +                              
    EGE25527.1 438 FGVGYLTSKNsglvpPRYEDGNKQDTQ-NILHNNKTKTGSVFWFEEYKPNDKLTVDAAARIEKQTITmdydkdaiyqslnlglatahepdirfkrll 533
                   558899755534555455555555555.777888999999********************9877777555555565666565555555555554444 PP

                   .SSSS...EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEEECSTT---EEEEEEEEEEEEEETTEEEEEEEEEEE CS
  TonB_dep_Rec 195 .gkdlragafsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggsngaggalsngnpdLkPEtsknyelGlkldddrlnltlayFrid 290
                    +++l    + ++++a s++vg   ++t+ ++l  + s   r P+ +elya g + a++++ +gn  L  E+s+n +lGl++++d+++  l +++ d
    EGE25527.1 534 dSGTL----NPKKQTARSYAVGTHLQLTPKHKLSLNLSHQERLPNAQELYAHGMHLATNSFEIGNRFLNKEKSNNIDLGLTFQGDKWDYRLGGYHYD 626
                   42222....223335559****9999*********************************************************************** PP

                   EEEEEEEESSSSCSTTTCS.........EEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEE.....EEECEC..EEECTTTTS.........S CS
  TonB_dep_Rec 291 iknfittdpdgpslgglgd.........fqyqNvgkarikGvElelsyrltpgWglglsgggytY.....ydagdd..sdaddggnp.........l 362
                   ++n+++ ++ ++   gl++          +y + + a+ +G++++++y++++ + + l+g  y       +    d  + +d +gn+          
    EGE25527.1 627 FDNYVFLQTLSQYKQGLRGmrhdkdlktARYEQ-AAAKFYGFDANIGYQINDVYHVALFGD-YIRgkltnLP---DkkGRTDAYGNRplikqpdshT 718
                   *************************76444444.556************999999888888.5535533211...1335666666666766666668 PP

                   TTEESEEEE..EEEEEECSEEEEEEEESEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEES.....SSEEEEEEEESTTETCSCEEESTTT CS
  TonB_dep_Rec 363 pnvPkhtan..lgltYkfpaggWgaglllagarYvavggrrygdaantfrrvpgYtlldlslgYklp.....knltlslgvnNLfdkryyassgyyg 452
                   p++P+ +++  l+++    + +W+   +++ +r++ +++      an  r++p+  l++l l+Y+ +       +++++++nNL++        ++ 
    EGE25527.1 719 PRLPPKRLGmkLTAN---VNANWS---GFLEYRHTFKQD----KLANFERPTPAHNLVNLGLNYQHKpshqaGSVQVFFNANNLLN-DKVFAHETF- 803
                   889******443566...788899...224567777777....5554444**************88887776666***********.455555566. PP

                   TTCCEB--SEEEEEEEEE CS
  TonB_dep_Rec 453 lggypgpgRtfrlglryk 470
                      +p++gR+f+lg+++k
    EGE25527.1 804 FPDMPQMGRNFMLGANFK 821
                   79**************96 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.37   1.3e+03      58      88 ..      31      61 ..      26      66 .. 0.68
   2 !   48.0   1.1   4.4e-16   1.6e-12      11     108 .]      63     158 ..      53     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.37
                CSEEEETTEEESCCCCSCTCGCSSBGGGEEE CS
        Plug 58 rvlvlvDGvpianggsgagdlssidpedier 88
                 ++v++DGv i++  ++++ + +     ++ 
  EGE25527.1 31 KPTVILDGVSITSLADQNTEFGVNHSKTVSG 61
                6899*******99666555555555555555 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 4.4e-16
                 EEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESC.CCCSCTCGCSSBGGGEEEEEEEESSCHCTTSSTGSSEE CS
        Plug  11 vvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpian.ggsgagdlssidpedierievlkGpasalyGsdaigGv 108
                 +v++e+++++ at+l+dal+g  gv+  s+  gggas   iRG +++r ++l +G ++ + +g + + +  +d+ + +++e+++G+ + ly s++++Gv
  EGE25527.1  63 TVSKEQLQQR-ATTLGDALAGELGVH--SNHFGGGASAPIIRGQEGKRLKILQNGSEVVDmSGLSPDHAIAVDTTLAKQVEIVRGSGALLYASGNSAGV 158
                 4799***888.***************..9*******************************55555666669***************************8 PP

>> OMP_b-brl_3  Outer membrane protein beta-barrel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         1   3.8e+03     279     321 ..     381     425 ..     370     451 .. 0.64
   2 ?   -1.7   0.3      0.29     1e+03     303     350 ..     466     513 ..     387     521 .. 0.64
   3 !   20.1   2.9   7.1e-08   0.00025     168     383 ..     555     802 ..     550     819 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1
  OMP_b-brl_3 279 nptkwwslnanl.nlyynkskidgslns.dvsnkgfswnlnntft 321
                  +++ + +++a++  + y++ +idg +++  ++n++ +w+l ++ t
   EGE25527.1 381 PFAGIDKIRASMgKVDYHHDEIDGGEKTsFFDNQANVWRLEASHT 425
                  444444555544367788888888755548888888898877655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.29
  OMP_b-brl_3 303 lnsdvsnkgfswnlnntftlpkkislqlngfyrspqvtaqgkrkafys 350
                  + ++ ++k+ s+++   ++ + k+++++ +  + + +t  ++ +a+y+
   EGE25527.1 466 ILHNNKTKTGSVFWFEEYKPNDKLTVDAAARIEKQTITMDYDKDAIYQ 513
                  333445555555556666666666666666666666666666555554 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 7.1e-08
  OMP_b-brl_3 168 klndknklqlslsYyrriinRPsisqLnPfrnysdplnisqGNPnLkPeftnsfelgysk...kwkltlslsyrytndniqi.tvitddnnn...... 255
                  +l++k+kl+l+ls  + +   P+ ++L         ++++ GN +L+ e++n+++lg ++   kw + l  +y y  dn ++ +  +++ ++      
   EGE25527.1 555 QLTPKHKLSLNLS-HQER--LPNAQELYAHGMHLATNSFEIGNRFLNKEKSNNIDLGLTFqgdKWDYRLG-GYHYDFDNYVFlQTLSQYKQGlrgmrh 648
                  78999*9999999.5555..4***************************************6555668887.444455554443333443333455555 PP

  OMP_b-brl_3 256 ..vllttyeNlgksqsyglelslslnptkwwslnanlnlyynkski..............dgslnsdvsnkgfsw...............nlnntftl 322
                     l t +   +  + yg+++++ +++++  ++ +  +  y + k+              +  l          +                +++t ++
   EGE25527.1 649 dkDLKTARYEQAAAKFYGFDANIGYQINDVYHVALFGD--YIRGKLtnlpdkkgrtdaygNRPL----------IkqpdshtprlppkrlGMKLTANV 734
                  55333333445567777777777777777777744333..434444112222222222111111..........122222223224432234555556 PP

  OMP_b-brl_3 323 pkkislqlngfyrspqv.taqgk..rkafysvdlglsksflk....kkltlslnvnDifntrkrrstt 383
                  + ++s  l +  + +q   a+++  + a   v+lgl+++       +  ++ +n+n+++n + +  +t
   EGE25527.1 735 NANWSGFLEYRHTFKQDkLANFErpTPAHNLVNLGLNYQHKPshqaGSVQVFFNANNLLNDKVFAHET 802
                  66666666666655555234444323333446777766553211125566667788888877776665 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.5   5.3e+03       9      56 ..      39      90 ..      33      99 .. 0.58
   2 ?   -0.2   0.1      0.27   9.8e+02      87     119 ..     477     507 ..     380     585 .. 0.54
   3 ?   14.2   2.5   9.7e-06     0.035      48     176 ..     621     772 ..     582     773 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
   OMP_b-brl  9 lsaaaaaassfggfyvggglglskvkvdgv.....gsdsgfgfgvgagyefnd 56
                +s++++a ++ + f+v  + ++s ++v+       ++  g+++ +++g++ n+
  EGE25527.1 39 VSITSLADQN-TEFGVNHSKTVSGITVSKEqlqqrATTLGDALAGELGVHSNH 90
                6677777666.677777555555555533322222333477777777777774 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.27
   OMP_b-brl  87 vpvnagyafnlsdsvlpyggaGlgytkvevdvs 119
                 v     y+   +d++ + + a + +   ++d++
  EGE25527.1 477 VFWFEEYK--PNDKLTVDAAARIEKQTITMDYD 507
                 22222332..22334444444444333344433 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 9.7e-06
   OMP_b-brl  48 vgagyefndnvgvegglsysgdkdysgs.......gktdikinllsvpvnagyafnlsds.....vlpyggaGlg...ytkvevdvsgng......asd 125
                 +g+ y+f+++v+++   +y ++   +             +  +++ + +n+gy++n  d      ++ y+ + l+     k ++d  gn       +s 
  EGE25527.1 621 GGYHYDFDNYVFLQTLSQYKQGLRGMRHdkdlktaRYEQAAAKFYGFDANIGYQIN--DVyhvalFGDYIRGKLTnlpDKKGRTDAYGNRplikqpDSH 717
                 5899**********999995553322222333332333344677779999999986..65554666667777777777334566666666999955555 PP

   OMP_b-brl 126 sdtdfglglgaGveyaladnwslkaeYrytdlks....dadndlknntfqvgvgy 176
                 + +    +lg  + ++++ nws  +eYr+t  ++     +  ++  n +++g++y
  EGE25527.1 718 TPRLPPKRLGMKLTANVNANWSGFLEYRHTFKQDklanFERPTPAHNLVNLGLNY 772
                 5555555778889999*************99977665444444777999999998 PP

>> DUF2796  Protein of unknown function (DUF2796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  15.5    0.0021       7.5      84     113 ..     333     360 ..     318     381 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0021
     DUF2796  84 edeeeeedehdheheeeskkkdhdheeaeH 113
                 ++++++++ehdh+h++++ +++hdh e++H
  EGE25527.1 333 HTHDDHDHEHDHAHDHDH-DHEHDH-EHDH 360
                 333344445555555444.333333.2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5781.15
//
Query:       EGE25528.1  [L=39]
Description: hypothetical protein EA1_06328 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 326.63
//
Query:       EGE25529.1  [L=100]
Description: CopG-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.048   14.1   0.1       0.09   13.2   0.0    1.5  1  RecX           RecX family
      0.097   12.1   0.0       0.12   11.8   0.0    1.1  1  Transcrip_reg  Transcriptional regulator


Domain annotation for each model (and alignments):
>> RecX  RecX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     1e-05      0.09      50      73 ..      74      97 ..      69     100 .] 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
                HHHHTTT--HHHHHHHHTTS-HHH CS
        RecX 50 qeLkqkGiseelieqaleeldeee 73
                ++L++kG+s+++i++al+++++++
  EGE25529.1 74 EKLRKKGVSQSIIDEALTDVNQTC 97
                58****************888776 PP

>> Transcrip_reg  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.3e-05      0.12      13      70 ..      34      93 ..      30      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.3e-05
                   CCCCHHHHHHHHHHHHHHHHHTHH-S-GGG-HHHHH...HHHHHHHTT--HHHHHHHHHHC CS
  Transcrip_reg 13 ndakkgklftklakeItvaakeeggpDpesNprLra...aiekakkanvpkdnIeraIkkg 70
                   +d +k   f+++   I +++++ g    + N +L++    iek +k++v+++ I++a+   
     EGE25529.1 34 EDTAKVHGFSRIQGLIRLYIRQ-GLDRDNCNYTLANdmlFIEKLRKKGVSQSIIDEALTDV 93
                   68899999*************7.7754578****9655589****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 741.84
//
Query:       EGE25530.1  [L=342]
Description: signal peptide peptidase SppA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-44  152.2   0.1    1.8e-44  151.4   0.1    1.4  1  Peptidase_S49  Peptidase family S49
    4.4e-06   26.7   1.0     0.0029   17.5   0.2    2.3  2  CLP_protease   Clp protease
      0.007   15.4   0.0      0.011   14.8   0.0    1.3  1  SDH_sah        Serine dehydrogenase proteinase


Domain annotation for each model (and alignments):
>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   0.1   3.1e-48   1.8e-44       6     148 ..     155     299 ..     150     303 .. 0.94

  Alignments for each domain:
  == domain 1  score: 151.4 bits;  conditional E-value: 3.1e-48
                    T--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHHHHHHHHHHHHHHHHHH CS
  Peptidase_S49   6 kkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksavslrrelteeereilqrlldetyqqFvq 101
                     k+++a+++++ aSg+Yy+asaad+i++nps++vgsiGvi+++ nle+l++k+gv+  +++aGeyk+++s +re+te er+++q+ll++t+q+F++
     EGE25530.1 155 DKKLYAIIGDLGASGAYYIASAADEIWVNPSSLVGSIGVIMSGYNLEELMKKVGVKDRTITAGEYKDILSSSREMTETERQHIQALLNKTHQNFIK 250
                    69********************************************************************************************** PP

                    HHHHHHT..S-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHH CS
  Peptidase_S49 102 tVaknRn..lsveqvdkiAegrvltgqqAlklgLvdelgtvddavaele 148
                    +V+++R+  l+  + +++ +g ++tg++A++lgL+d++g++ ++ + l+
     EGE25530.1 251 AVKQGRGskLKNPEQNQLFSGLIWTGTDAVELGLADKTGGISQLKKTLD 299
                    ******6225666788899**********************99988775 PP

>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   4.8e-07    0.0029      27      96 ..     103     177 ..      89     184 .. 0.73
   2 !    7.6   0.0   0.00053       3.2     117     177 ..     214     287 ..     209     291 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.8e-07
                   HHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHS...SS-EEEEEE.E.EEETHHHHHHHTS CS
  CLP_protease  27 devankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyi...kpdvsticl.G.laaSmgslllaag 96 
                   d  a++i   L+ + ++++ k ++l inspGGs  ++ +I+ +  ++    pd + +++ G l+aS +  +++a+
    EGE25530.1 103 DVNAQNINDSLMEAFENNQAKAVVLNINSPGGSPVQSDEIWQMAMMLrqeYPDKKLYAIiGdLGASGAYYIASAA 177
                   45678888899999999************************9866662223555554444436677776676666 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00053
                   EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHH.............HHCSTEEEEHHHHHHHTSSSE CS
  CLP_protease 117 gaqgqasdieieaeellkikerlneilakhtgqslekiek.............dldrdtflsaeeAveyGLide 177
                    + g+ +di    +e+++++++ ++ l ++t+q+  k  k             +l    + + ++Ave GL+d+
    EGE25530.1 214 ITAGEYKDILSSSREMTETERQHIQALLNKTHQNFIKAVKqgrgsklknpeqnQLFSGLIWTGTDAVELGLADK 287
                   578899****************9999999999997665554999999965555555555666699999999997 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-06     0.011      91     175 ..     122     211 ..     107     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-06
     SDH_sah  91 dkpidliihtpGGlvlaat...qiakalkeh.k.aktrvivphyamsGGtlialaadeiildenavlGpvdpqlgqypaasilkvvekke 175
                  k + l i +pGG  + ++   q+a  l++  +  k   i+     sG   ia aadei +++ +++G +   ++ y    ++k v  k+
  EGE25530.1 122 AKAVVLNINSPGGSPVQSDeiwQMAMMLRQEyPdKKLYAIIGDLGASGAYYIASAADEIWVNPSSLVGSIGVIMSGYNLEELMKKVGVKD 211
                 567889999****99998733356778876523145678*******************************99999999999988887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      712  (0.0397122); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2627.81
//
Query:       EGE25531.1  [L=842]
Description: competence protein ComEC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-47  160.5  38.9      5e-47  160.5  38.9    2.4  2  Competence  Competence protein
  ------ inclusion threshold ------
      0.056   13.1   0.0      0.056   13.1   0.0    5.9  6  DUF4131     Domain of unknown function (DUF4131)
       0.21   11.5   0.0       0.36   10.7   0.0    1.2  1  DUF5119     Domain of unknown function (DUF5119)


Domain annotation for each model (and alignments):
>> Competence  Competence protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   7.0         3   1.8e+04     231     267 ..      15      51 ..       1      96 [. 0.39
   2 !  160.5  38.9   8.4e-51     5e-47       1     267 [.     294     577 ..     294     583 .. 0.84

  Alignments for each domain:
  == domain 1  score: -5.8 bits;  conditional E-value: 3
  Competence 231 ellellaslplaslvlgkpslllllllylllllllll 267
                 ++l  ++++ + + +l  +   +++ll+ + lll+ll
  EGE25531.1  15 AILGSIEQFWFDETWLSILASDQCILLITAGLLLCLL 51 
                 3333333333333333222222222222222222211 PP

  == domain 2  score: 160.5 bits;  conditional E-value: 8.4e-51
  Competence   1 LllGdrselseevweafqktGlaHllAiSGlHvglvagllllllrrl........llrlplrklaallallflllYallaGfspsvlRAllmlllvlla 91 
                 L++Gdr  ++++++e +q +G++HllAiSG Hv ++a++l +l+ ++        + +lp+ ++++++++l+ l+Yal++Gf ++++R++  l+++ l+
  EGE25531.1 294 LMTGDRALIDKHTKELYQLAGISHLLAISGTHVLFLAVILSALVTFMtdkfaqriYAHLPRWQIRMMVMVLASLVYALFTGFDVPAVRTVYLLIAAWLV 392
                 89************************************999999999999999555555555555********************************** PP

  Competence  92 lllkrkaspldalalaallvllvdPlallsaGfqLSflavagillla....prlekalkrlskkvrelllla....vslaaqlallplllylfgqislv 182
                 + l  +a+++++la++all++++dP++l++aGf+LSf+av++++ +       +++  +++ + vr++l+++    +++++++ +lp++++lfg++s++
  EGE25531.1 393 RYLILPADMISVLAWVALLMIWLDPYVLWQAGFWLSFIAVLLLMRYEspkiDMINDTNQNQGQLVRRWLQFKqavrLQFWLFFSMLPVSILLFGKVSIW 491
                 ********************************************99965553444444444444444444448888*********************** PP

  Competence 183 sllaNllavPlvsllvlplalla.llllllpslaalllqladlllelllellellaslplaslvlgkpslllllllylllllllll 267
                 +l++Nl+a+ l++++v+p+ l+a +++ +lp l++ll+     +l +l+++l +  s ++ sl      + +++ ++l ++++ l+
  EGE25531.1 492 GLVVNLFAIGLFGFVVVPINLIAgAVFGILPELSQLLWGTSSAVLYWLHDFLYFGLSSQIGSLGAWLYAPFGMAGFLLSFMVVGLW 577
                 *******************887616666777*********************8877744555444444455555555555555544 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   9.7       1.1   6.7e+03       8      47 ..      38      82 ..       2     104 .. 0.61
   2 ?   13.1   0.0   9.3e-06     0.056     118     161 ..     196     240 ..     177     246 .. 0.83
   3 ?   -1.2   2.5      0.23   1.4e+03       8      48 ..     326     370 ..     317     386 .. 0.51
   4 ?   -0.6   3.8      0.16   9.3e+02       9      63 ..     401     450 ..     393     473 .. 0.69
   5 ?   -2.5   0.4      0.58   3.5e+03      28      48 ..     486     506 ..     455     514 .. 0.57
   6 ?   -4.2   7.3         2   1.2e+04       4      45 ..     559     599 ..     526     600 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.1
     DUF4131  8 vllalllllllllllllrr.....rprrrvllllllllllallgf 47
                ++l++ + lll+ll +++      ++ +r l ++ll++ ++ll++
  EGE25531.1 38 CILLITAGLLLCLLGWSLIptsklAKINRLLKACLLVASIVLLFV 82
                455555555555555555567776444444444444444333333 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 9.3e-06
     DUF4131 118 e.glrpGdrlrltgrlkrprpatNpggFDyraYLarqgIfatlyv 161
                   +++p  rl+ +  + ++ +     gFD  ++L++++I+a++++
  EGE25531.1 196 LaKVQPAMRLTAEILITPIDKTPSASGFDTNQWLRTRHIHAQAKI 240
                 2578999999999999999999999*****************987 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.23
     DUF4131   8 vllalllllllllllllrr.......rprrrvllllllllllallgfa 48 
                 vl+++++l +l+ ++   +       +  +r+ +  +++++la+l++a
  EGE25531.1 326 VLFLAVILSALVTFMT--DkfaqriyAHLPRWQI-RMMVMVLASLVYA 370
                 3344444444444444..3448888633333333.3333333333332 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.16
     DUF4131   9 llalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqll 63 
                 ++ +l++++ll ++l      + vl+ +++ l ++++ ++ r+ +p  + +++ +
  EGE25531.1 401 MISVLAWVALLMIWL-----DPYVLWQAGFWLSFIAVLLLMRYESPKIDMINDTN 450
                 778888888888888.....46666666666666666666666666666555555 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 0.58
     DUF4131  28 prrrvllllllllllallgfa 48 
                  +  +++l+  l++++l+gf+
  EGE25531.1 486 GKVSIWGLVVNLFAIGLFGFV 506
                 233456666666666666654 PP

  == domain 6  score: -4.2 bits;  conditional E-value: 2
     DUF4131   4 plalvllalllllllllllllrrrprrrvllllllllllall 45 
                   ++ + ++ll ++++ l++l  +  +rvl++l l+++++l+
  EGE25531.1 559 YAPFGMAGFLLSFMVVGLWILP-NVLPRVLIILPLVAMIFLG 599
                 3344444444444444444443.8899999999999988765 PP

>> DUF5119  Domain of unknown function (DUF5119)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.1e-05      0.36     139     180 ..      77     117 ..      73     130 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.1e-05
     DUF5119 139 ltltlepesvvetytleirkvkglqyvssisaslsgmsgsll 180
                 ++l + ++++v ++t+ei +  +++y+ s+ a++  +s++++
  EGE25531.1  77 IVLLFVVRTLVAYVTYEI-HTPNARYMVSADAHIHTLSDGIY 117
                 6788999***********.*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1040  (0.0580066); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 6091.69
//
Query:       EGE25532.1  [L=242]
Description: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-57  192.6   0.0    8.7e-57  192.4   0.0    1.0  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
    1.6e-11   44.8   0.0      2e-11   44.5   0.0    1.2  1  NTP_transf_3     MobA-like NTP transferase domain
     0.0082   15.7   0.0      0.022   14.3   0.0    1.6  2  NTP_transferase  Nucleotidyl transferase


Domain annotation for each model (and alignments):
>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.4   0.0   1.5e-60   8.7e-57       4     219 ..       8     231 ..       5     233 .. 0.91

  Alignments for each domain:
  == domain 1  score: 192.4 bits;  conditional E-value: 1.5e-60
                 EEECTTSSCTT-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHHHHGG.....CCEEEEE--SSHHHHHHHHHHTTSSTT....S CS
        IspD   4 vipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvvvseddteefeqllld.....ksiqlvaGGdeRaesVlnglkalegea....k 93 
                 +i+AAG+G+R +a++pKq+l++  +++l+h+++ l  ++ +d + vv+ +dd     ++l       + i    GGdeR +sV+ngl+ +  e     +
  EGE25532.1   8 LIVAAGTGSRFGANKPKQYLKIGTKSILTHSISRLN-HPDLDALTVVIAHDDAYIQGEMLDMqssfdQAIYYTTGGDERWQSVMNGLDKICAEGgldgD 105
                 79******************************9875.6**********999965444444334668899******************998766446689 PP

                 EEEE--TT-TT--HHHHHHHHHHH.HTTCSEEEEEEE-SSEEEEEETTTBEEEEETGTTEEEEEEEEEEEHHHHHHHHHHHHHCT---SSHHHHHHHTT CS
        IspD  94 fVLvHDaARpllkaadiaellaaa.eqstqgailalpvkDtikrveadglvaetedRegLwaaqtPqgFrvdlllaahakgeqegaeitDdaslvekiG 191
                 +VL+HDaARp+l+  d+++l+ +  ++++++aila +v Dt+k ++ d+ +++t+ R++Lw+a+tPq+F++ +l++a++    +  +itD+as+ e +G
  EGE25532.1 106 WVLIHDAARPCLPYTDLDRLIHKIkSNQCNAAILATAVVDTLKFAK-DNHISHTVSRDDLWQALTPQAFKIGVLKSAFEFVIANRLQITDEASACEAMG 203
                 *********************86515679*****************.9*********************************9999************** PP

                 --EEEEE--TTG----SHHHHHHHHHHH CS
        IspD 192 lsvkvVeGeednlKittpeDlalAeail 219
                  sv++V+ ++ n+K+t+p+Dl l e il
  EGE25532.1 204 ESVAIVPASRMNIKLTYPDDLPLMEKIL 231
                 ***********************99998 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   3.3e-15     2e-11       2     124 ..       8     142 ..       7     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 3.3e-15
                   EEEEESS-TTTTT..THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHHHHHTTCTS-E.....EE-TTSS-SHHHHHHHHHHH.H.....SS CS
  NTP_transf_3   2 viLAGGrSsRmgg..dKallplggkpllervldalraagvdevvvvggdeevlaalarlgvrv.....vededpgkgplaslaaalra.aa....da 86 
                   +i A+G +sR+g   +K+ l++g k++l +++ +l++  +d ++vv  +++ + + + l+++      ++ +  g    +s+  +l++ +a    d 
    EGE25532.1   8 LIVAAGTGSRFGAnkPKQYLKIGTKSILTHSISRLNHPDLDALTVVIAHDDAYIQGEMLDMQSsfdqaIYYTTGGDERWQSVMNGLDKiCAegglDG 104
                   799*********767*********************999*******9998655444444433311111222334566678888888876334778** PP

                   SCEEEEETT-TT--HHHHHHHHHCHHHHTSSEEEEESS CS
  NTP_transf_3  87 davlvlacDmPlltpelverllaaaaasgadvvvptye 124
                   d+vl+  +  P+l+   ++rl+++++++++++++++++
    EGE25532.1 105 DWVLIHDAARPCLPYTDLDRLIHKIKSNQCNAAILATA 142
                   *****************************999887765 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.7e-06     0.022       2      72 ..       7      73 ..       6     109 .. 0.82
   2 ?   -1.6   0.0      0.26   1.6e+03      18      53 ..     110     145 ..     106     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-06
                     EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT CS
  NTP_transferase  2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg 72
                     ++I a G+G+R+     + +k+ + +++k +++ + +srl   + +++ vv+ ++++ +  e l  +s f+
       EGE25532.1  7 PLIVAAGTGSRF---GANKPKQYLKIGTK-SILTHSISRLNHPDLDALTVVIAHDDAYIQGEMLDMQSSFD 73
                     79*********8...58999999999999.*****************999999888887777777777766 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.26
                      TTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEE CS
  NTP_transferase  18 rtlakklvpvlgkerliqatlsrlansgieeiivvl 53 
                      ++ a + +p  + +rli +  s+  n+ i ++ vv 
       EGE25532.1 110 HDAARPCLPYTDLDRLIHKIKSNQCNAAILATAVVD 145
                      567888889999999999999999999988877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1877.87
//
Query:       EGE25533.1  [L=136]
Description: cell division protein FtsB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-19   67.9   0.3    6.4e-19   67.5   0.3    1.2  1  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.3   3.6e-23   6.4e-19       1      79 [.      28     106 ..      28     107 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 3.6e-23
                 XXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DivIC   1 llllfllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselglvkpgEtvyrvve 79 
                 +l+l+++  ++g++g  ++ ++k++++++++ ++++ ++n+ L a vkdLks+ ++iee AR +lgl+kpgEt++++++
  EGE25533.1  28 VLVLMQIQYWYGDYGHANLIAVKNQLHEQNRLNQEQINKNNILLADVKDLKSGLSAIEEHARLDLGLIKPGETFIQLSN 106
                 58999**********************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1029.62
//
Query:       EGE25534.1  [L=438]
Description: phosphopyruvate hydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-131  437.4   0.3   3.4e-131  436.9   0.3    1.1  1  Enolase_C  Enolase, C-terminal TIM barrel domain
    7.3e-57  191.2   1.6    2.3e-56  189.6   1.0    2.0  2  Enolase_N  Enolase, N-terminal domain
    1.9e-06   27.2   0.4    1.4e-05   24.4   0.0    2.1  2  MAAL_C     Methylaspartate ammonia-lyase C-terminus
    7.9e-05   22.3   0.0    0.00016   21.4   0.0    1.4  1  MR_MLE_C   Enolase C-terminal domain-like


Domain annotation for each model (and alignments):
>> Enolase_C  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  436.9   0.3  7.5e-135  3.4e-131       2     291 ..     151     431 ..     150     434 .. 0.98

  Alignments for each domain:
  == domain 1  score: 436.9 bits;  conditional E-value: 7.5e-135
                 -EE-EE-EEEEE-GGGSSSS--SSEEEEE-TT-SSHHHHHHHHHHHHHHHHHHHHHCC.GGGG-B-TTS-B----SSHHHHHHHHHHHHHHCT-TC..T CS
   Enolase_C   2 lvlPvPalnvinGGshagnklalqefmilPvgassfkealrlGaevyhklksvlkkkygksatnvGdeGGfaPnlqsnkealdliveaiekaGykg..k 98 
                 l++PvP++n++nGG ha+n++++qefmi Pvg  sf+ealr G+e++h lksvlk+++   +t+vGdeGGfaPnl+sn+ea+ +i++ai+kaGyk   +
  EGE25534.1 151 LTMPVPMMNILNGGAHADNTVDIQEFMIEPVGFASFSEALRAGTEIFHALKSVLKAQG--LNTAVGDEGGFAPNLRSNEEAITVIMQAIDKAGYKAgeN 247
                 589*******************************************************..***********************************8889 PP

                 BEEEEE--GGGCEETCTTEEECTTTTTT..GGCEEEHHHHHHHHHHHHHHS-EEEEES-S-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHH CS
   Enolase_C  99 vkialdvassefykekdkkydldfkeeesdkskkltseqladlykelvkkyPivsiedpldeddweawkklteelgdkvqivGddltvtnpkrlkeaie 197
                 + +ald+a+sefy  k+++y l++++     +k++ s+ ++d++++l+++yPi+sied+lde+dwe+w++lt++lg+kvq+vGddl+vtnpk+l+e+i+
  EGE25534.1 248 IFLALDCAASEFY--KNGQYILAGEG-----NKAFDSQGFSDYLTSLCNQYPIISIEDGLDESDWEGWAYLTKQLGKKVQLVGDDLFVTNPKILQEGID 339
                 *************..778*******9.....899***************************************************************** PP

                 CT--SEEEE-HHHH-SHHHHHHHHHHHHHTT-EEEEE--SC--S--HHHHHHHHCT-SEEE---S-SHHHHHHHHHHHHHHHHHGCC-EE-GGG CS
   Enolase_C 198 kkaanalllkvnqiGsltesleavklakeagygvvvshrsGetedttiadlavglsaGqiktGaparserlakynqllrieeelgekakyaGkk 291
                 k++ana+l+k+nqiG+l+e+l+a+ lak++gy++v+shrsGeted+tiadlavg++aGqiktG+++rs+r+akynqllrie+++  +a y G++
  EGE25534.1 340 KDIANAILIKFNQIGTLSETLDAIYLAKQNGYATVISHRSGETEDSTIADLAVGTAAGQIKTGSLCRSDRVAKYNQLLRIEQQV--RAAYRGRE 431
                 **********************************************************************************98..57788876 PP

>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.6   1.0   5.1e-60   2.3e-56       1     131 []      12     142 ..      12     142 .. 0.99
   2 ?   -0.9   0.0      0.38   1.7e+03      83     115 ..     226     256 ..     216     260 .. 0.81

  Alignments for each domain:
  == domain 1  score: 189.6 bits;  conditional E-value: 5.1e-60
                 EEEEEEEEEE-TTS-EEEEEEEEETTC-EEEEE--B-BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHH-STT CS
   Enolase_N   1 IkkvkareildSrGnpTvevevttedgalgraavpsGaStgekealelrDgdkkrylgkgvekavenvnekiapaligldvtdqeeiDkllielDgten 99 
                 Ik++ areildSrGnpT+e++v++++g+ graa+psGaStg++ealelrDgd++rylgkgv+kav+n+n++i+  l+++dvt+q++iD++lielDgten
  EGE25534.1  12 IKDIIAREILDSRGNPTIEADVILANGIRGRAAAPSGASTGSREALELRDGDTSRYLGKGVKKAVANANSQIRTVLLDKDVTQQTQIDNILIELDGTEN 110
                 89************************************************************************************************* PP

                 -TTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH CS
   Enolase_N 100 ksklGaNailavSlAvakaaAkakelplyryl 131
                 k ++GaNa+lavSlAvakaaA a++lpl +y+
  EGE25534.1 111 KGNMGANAMLAVSLAVAKAAAIAQSLPLHQYI 142
                 *******************************8 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.38
                 -HHHHHHHHHHHH-STT-TTT-HHHHHHHHHHH CS
   Enolase_N  83 dqeeiDkllielDgtenksklGaNailavSlAv 115
                 + e+i  +++++D  +   k G N  la+  A+
  EGE25534.1 226 NEEAITVIMQAID--KAGYKAGENIFLALDCAA 256
                 6678889999999..556788999999988876 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.06   2.7e+02     187     222 ..      97     132 ..      86     135 .. 0.82
   2 !   24.4   0.0   3.1e-09   1.4e-05     127     217 ..     309     397 ..     270     403 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.06
      MAAL_C 187 kekgvgaylGGscnetdvsarvsvhvalatrpaqlL 222
                 +  ++ + l G+ n  +++a+++  v+la+  a  +
  EGE25534.1  97 QIDNILIELDGTENKGNMGANAMLAVSLAVAKAAAI 132
                 5566777889*******************9876655 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 3.1e-09
      MAAL_C 127 aelreklkekgikvelvaDeWcntledi.refvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvsarvsvhvalatr 217
                 a l++   + g kv+lv D+   t   i +e +d++ a+++ ik   +G++++t++a+  +k++g  + +   + et+ s+ +   v+ a++
  EGE25534.1 309 AYLTK---QLGKKVQLVGDDLFVTNPKIlQEGIDKDIANAILIKFNQIGTLSETLDAIYLAKQNGYATVISHRSGETEDSTIADLAVGTAAG 397
                 44444...55889******9887777664899***********************************************9877777776665 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.5e-08   0.00016      48     183 ..     266     406 ..     253     425 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.5e-08
                 EEEEE-TTTSBHHHHHHHHHHH.GGGTESEEESSSSTTTHHHHHHHHHHHH...SSEEEESTTSSS.HHHHHHHHHHTSESEEEEBHHHHTSHHHHHHH CS
    MR_MLE_C  48 dlmvDanqawdlatAirvarel.eeldllwlEEPvppeddleglaelrara...sipiaagEslys.radfrelleagavdivqpdvsrvgGitearkv 141
                  l+ + n a+d +    ++  l +++ +  +E+ +    d+eg a l++ +   +++++++    + ++ ++e ++++ + ++ ++ +++g ++e+++ 
  EGE25534.1 266 ILAGEGNKAFDSQGFSDYLTSLcNQYPIISIEDGLDE-SDWEGWAYLTK-QlgkKVQLVGDDLFVTnPKILQEGIDKDIANAILIKFNQIGTLSETLDA 362
                 567778999999999999999956699*********9.57********7.33569******987666******************************** PP

                 HHHHHHTT-EEEEBS.CS.SHHHHHHHHHHHHTTTTBEEEEEEG CS
    MR_MLE_C 142 aalaeafgvpvapHs.gs.gglglaaslhlaaaipnllileyfl 183
                 + la+++g+  ++ +  + +  +++a l + +a+ +++  + + 
  EGE25534.1 363 IYLAKQNGYATVISHrSGeTEDSTIADLAVGTAAGQIKTGSLCR 406
                 ********996655524436999999999998888777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3200.13
//
Query:       EGE25535.1  [L=287]
Description: 2-dehydro-3-deoxyphosphooctonate aldolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-72  243.3   0.0    2.5e-72  243.0   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family
  ------ inclusion threshold ------
      0.045   13.2   0.0       0.59    9.5   0.0    2.2  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.0   0.0   2.8e-76   2.5e-72       9     273 ..      15     278 ..       5     280 .. 0.97

  Alignments for each domain:
  == domain 1  score: 243.0 bits;  conditional E-value: 2.8e-76
                   HHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S..SSTTS-SHTTHHHTHHHHHHHHHHHT-EEEEEESSCCTHH CS
  DAHP_synth_1   9 adiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKp.RrstvgfkGlindpdlkilsrikkelglpiatevldpisvq 104
                   ++i iG+d++++++ G++++e++e a+e+Ae++  + ++l+  + ++++a+f+K+ R+s ++f+G+ ++++l +l +ik+++++pi+t+v++p ++ 
    EGE25535.1  15 SGIEIGNDKPFVLFGGMNVLESRELAFEIAEQYIDICQRLN--IGYVFKASFDKAnRSSLHSFRGPSLENGLTWLNDIKETYNVPIITDVHEPYQAA 109
                   6899***********************************88..****************************************************** PP

                   HHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TTHHHHHHHHHHHHHHHTTEEE--EEEEEEEEEESTSSSSSCHCHHHHHHHHHHCTSS-E CS
  DAHP_synth_1 105 yladvvdiiqiGArttesqdllelasglskpvglKngtdvaidemkaaaekilflgvetkgiilcerglrggkktnrdvedvaavkilkeetgklpv 201
                    +a+v+di+q++A++++++dl+++++++ k++++K+++++a+ em+++ +k+l++g  ++++ilcerg+ +g+  n+ v d+  +  +k+ +  +pv
    EGE25535.1 110 PVAKVADILQLPAFLSRQTDLVSAIARTGKIINVKKAQFLAPHEMRHIINKCLEAG--NDQVILCERGSAFGY--NNLVVDMLGFDTMKSMN--VPV 200
                   ********************************************************..7**************..***************99..6** PP

                   EEESCHHHTTCG......GGGHHHHHHHHHHHHHTTESEEEEEBBSSCCC-SSTGGGGBBCTCBHHHHHHHHHHHHHH CS
  DAHP_synth_1 202 mvDvsHansrkd......ykrqkkvlklakaaiaaGiaGvmiEshlnpgkalsdgkqalkygksetdacilkeltell 273
                   ++Dv+Ha ++++      ++r+++++ la+a++a G+aG+++E+h++p+ka++dg++al+++++e +  + k+l++l+
    EGE25535.1 201 FFDVTHALQEPGargdsaGGRRHQITTLARAGMATGLAGLFLEAHPDPDKAKCDGPSALRLNQLEPFLIQIKQLDDLV 278
                   *************************************************************************99876 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   6.6e-05      0.59      38     148 ..       8     118 ..       6     120 .. 0.71
   2 ?    1.3   0.0     0.022     2e+02     149     168 ..     191     210 ..     161     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 6.6e-05
                   HHTTSEEEEEEECCCHSTCTHCHTTCS....HHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTSGHHHHHH.HHHHHHHHHHHHHHHHTSEEEE CS
  AP_endonuc_2  38 delglriaslslftrfgypdederear....reesvdalkraielaaaLGapllvlhpGtagagpkgseeeawe.rlaeslneladyaekegvklal 129
                   ++ +++++++++ ++   ++      +    re +++ +++ i+++++L++ ++   +   +  +++s  + +   l ++l  l d+ e+++v ++ 
    EGE25535.1   8 AQSNITVSGIEIGNDKPFVLFG--GMNvlesRELAFEIAEQYIDICQRLNIGYVFKASF--DKANRSSLHSFRGpSLENGLTWLNDIKETYNVPIIT 100
                   6678888888888888887774..22235677999******************988877..444444444444314555788888888888888888 PP

                   E--TTTTSSSTCHHHHHHH CS
  AP_endonuc_2 130 Etlagsgvelgdeelarll 148
                     + +  + +  +++a++l
    EGE25535.1 101 DVHEPYQAAPV-AKVADIL 118
                   88877777777.7776666 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.022
                   HHHTTTTEEEEEEHHHHHHH CS
  AP_endonuc_2 149 davdspnvgvclDtgHllia 168
                   d  +s nv+v +D+ H+l +
    EGE25535.1 191 DTMKSMNVPVFFDVTHALQE 210
                   778899**********9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2253.94
//
Query:       EGE25536.1  [L=544]
Description: CTP synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.6e-122  405.7   0.0   1.2e-121  405.1   0.0    1.3  1  CTP_synth_N    CTP synthase N-terminus
    5.5e-57  192.6   0.0    1.1e-56  191.6   0.0    1.6  1  GATase         Glutamine amidotransferase class-I
    2.2e-09   37.4   0.8    1.5e-08   34.6   0.7    2.4  1  Peptidase_C26  Peptidase C26
  ------ inclusion threshold ------
       0.01   15.7   0.1       0.19   11.6   0.0    2.6  3  SNO            SNO glutamine amidotransferase family
      0.013   15.1   0.0      0.026   14.1   0.0    1.4  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
      0.013   15.5   0.0       0.02   15.0   0.0    1.5  1  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
       0.12   12.1   0.0       0.31   10.8   0.0    1.6  1  DJ-1_PfpI      DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> CTP_synth_N  CTP synthase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.1   0.0  4.6e-125  1.2e-121       1     264 [.       4     266 ..       4     267 .. 0.98

  Alignments for each domain:
  == domain 1  score: 405.1 bits;  conditional E-value: 4.6e-125
                  EEEEEEE--STTTTHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSSTT--CCCC--EEE-TT--EEETHHHHHHHHHT.----GGGEEEHHHHHHHHH CS
  CTP_synth_N   1 kyilvtGGvvSglGkGiiaaslgallksrglkvtlikiDPYlnvdagtlsplehGEvfvlddGaetDlDlGnYeRfld.ikltkennittGkiyksvi 97 
                  k+i+vtGGvvS+lGkGi+aas++a+l++rglkvt++k+DPY+nvd+gt+sp++hGEvfv++dGaetDlDlG YeRfl   k++k+nn+t+G+iy++v+
   EGE25536.1   4 KFIFVTGGVVSSLGKGIAAASIAAVLEARGLKVTMTKMDPYINVDPGTMSPFQHGEVFVTEDGAETDLDLGYYERFLRrSKMSKANNFTSGRIYQTVL 101
                  8***************************************************************************973689**************** PP

                  HHHHTTTTTT----CCCHHHHHHHHHHHHHH.HCT-SEEEEEE-S-TTSGGGHHHHHHHHHHHHHH-TTTEEEEEEEE--B-TTTSSB-HHHHHHHHH CS
  CTP_synth_N  98 ekerrGdylGktvqviphvtdeikeriekvakkveadvviveigGtvgdieslpfleairqlklelgkenvllihvtlvpvlkaagelktkptqhsvk 195
                   kerrGdylG tvqviph+tdeik++i++  +    d++i+eigGtvgdieslpf+ea+rq+++elg+++ ll+h+tlvp++++age ktkptqhsvk
   EGE25536.1 102 AKERRGDYLGGTVQVIPHITDEIKHKIRTSGE--GYDIAIIEIGGTVGDIESLPFMEAVRQMQVELGRTHSLLMHLTLVPYIASAGESKTKPTQHSVK 197
                  ****************************9998..8*************************************************************** PP

                  HHHHHT---SEEEEEESS---HHHHHHHHHHCT--GGGEEEEE--S-GGGHHHHHHHCTHHHHHHHHTT CS
  CTP_synth_N 196 elrslGiqpdiivcrsekeleeevkekialfcnvekeavisvkdvesiyevpllleeqglaelileklk 264
                  elrs+G+qpd+++crse++++e++++kialf+nve + vi ++d++siy++p  l eq+l++li+e++ 
   EGE25536.1 198 ELRSIGLQPDVLICRSEQPISEDNRQKIALFTNVEPRGVILCEDAKSIYQIPRRLYEQDLDDLICERFG 266
                  ******************************************************************986 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6   0.0   4.5e-60   1.1e-56       2     190 .]     302     537 ..     301     537 .. 0.94

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 4.5e-60
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHH....THHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEE... CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeile....llknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvv... 93 
                 l D+y+sv+e+l+ha+++++ kv ++ i+a+a+e+++    + +++d+ilv+gG+g++g+ gk+eai++aren++P+LGICLGmQl++ie++r+v    
  EGE25536.1 302 LPDAYKSVNEALLHAGIHNKTKVSIRYISAEALETDSeamnQITDVDAILVPGGFGERGTLGKMEAIQFARENNKPFLGICLGMQLAVIEYARNVLgie 400
                 79*********************************666654599*************************************************888888 PP

                 .............................EEECEEEEEEEEEEEETTT........CGGTTTTSEEEEEEEEEEEEESG...CHHHTTEEEEEEEETTE CS
      GATase  94 .............................kekekehhggtmrlgddet........allyglknevierhrHryevnpk...elepaglevtaksedde 152
                                               +++ +++ggtmrlg++e+        a++yg+   ++erhrHrye+n++    le+ag+++++ s+++ 
  EGE25536.1 401 anstefdrktanpiiglitewfdekgelqTRSDDSDLGGTMRLGAQEAelvsnsklAEIYGS-HNITERHRHRYEMNNRyiePLENAGMKISGYSAKQ- 497
                 8888888888888889999999999999988889***********999*************9.99************9999999***********998. PP

                 EEEEEEEETT.T.EEEESSBTTSTTSTTHHHHHHHHHHHH CS
      GATase 153 elmeiiekkn.p.fvgvQFHPEststpegpellfnflika 190
                 +l+e +e +n p fv+vQ+HPE+ts+p+g ++lfn++ika
  EGE25536.1 498 HLVESVEIDNhPwFVAVQYHPEFTSSPRGGHPLFNSFIKA 537
                 899999*9999**************************986 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.7     6e-12   1.5e-08      97     216 .]     367     519 ..     329     519 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 6e-12
  Peptidase_C26  97 LiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhrehe.......................q.....saashavkvekgsllaellg 164
                     i+ a e+++P lgiC+G+ql  + +  + +  ie++s++ d + ++                       +        +++ +++++s lae++g
     EGE25536.1 367 AIQFARENNKPFLGICLGMQLAVIEYARN-VLGIEANSTEFDRKTANpiiglitewfdekgelqtrsddsDlggtmRLGAQEAELVSNSKLAEIYG 461
                    56778899************997776554.44566544544444444689999999999998877766550555567889999************* PP

  Peptidase_C26 165 seeievnslHhqaike......laeelrveAvae.DgviEaieseeakafvlgvQwHPE 216
                    s++i     H+  +++       + +++++  ++   ++E +e+ +++ ++++vQ+HPE
     EGE25536.1 462 SHNITERHRHRYEMNNryieplENAGMKISGYSAkQHLVESVEIDNHP-WFVAVQYHPE 519
                    99999999999999999999977889*****998799*********88.99*******9 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.23   5.8e+02     129     163 ..     265     300 ..     248     304 .. 0.78
   2 ?   11.6   0.0   7.3e-05      0.19      25      80 ..     338     387 ..     313     406 .. 0.76
   3 ?   -1.6   0.0      0.78     2e+03     161     174 ..     510     523 ..     492     538 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.23
                 E.SS--EEEEE-.TTTCEEEEECTTEEEEEEETTEE CS
         SNO 129 f.iraPvieeilddeavkvlyeldgeivvakqkkil 163
                 f i aP  +    d++v+ l + +geivva  +k++
  EGE25536.1 265 FgITAPEADLSDWDKVVDDLFNSQGEIVVAMVGKYV 300
                 3388898888888999999***********988886 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.3e-05
                 E-SGGGGCC-SEEEE-SS..-HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHH CS
         SNO  25 vkrkedlaevdaliiPGG..estamskliertglyedllefvknsekvvlGtCaGlil 80 
                     +++ +vda+++PGG  e  +++k+ e         +f+++++k+ lG C G+ l
  EGE25536.1 338 SEAMNQITDVDAILVPGGfgERGTLGKM-EA-------IQFARENNKPFLGICLGMQL 387
                 45689************73366676664.33.......4599999**********966 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.78
                 TEEEESS-GGGSTT CS
         SNO 161 kilatsfhPelaed 174
                  ++a+ +hPe++ +
  EGE25536.1 510 WFVAVQYHPEFTSS 523
                 589999****9987 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     1e-05     0.026      33     100 ..     340     401 ..     318     415 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
    GATase_3  33 kdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeei.edpegveg 100
                   +++ +d+d++++pGg+ ++  l      g  eai+ a e+++p lgiC G+q+   e+ ++  g+e 
  EGE25536.1 340 AMNQI-TDVDAILVPGGFGERGTL------GKMEAIQFARENNKPFLGICLGMQLAVIEYaRNVLGIEA 401
                 33344.67************9988......556779******************865555455566655 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   7.6e-06      0.02       8      43 ..      14      49 ..       7     393 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.6e-06
                TTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCC CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  8 GGvGKTtlaanLaralarrglrVllvDaDpqannla 43
                +  GK   aa++a+ l  rgl+V + ++Dp  n + 
  EGE25536.1 14 SSLGKGIAAASIAAVLEARGLKVTMTKMDPYINVDP 49
                5569**************************999877 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.31      60     106 ..     345     387 ..     308     396 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                 CG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHH CS
   DJ-1_PfpI  60 aeyDalvlpGGragperlrenekvvelvkefaekgklvaaICagpql 106
                  + Da+++pGG     +l +  +++++++   e++k++  IC g ql
  EGE25536.1 345 TDVDAILVPGGFGERGTLGKM-EAIQFAR---ENNKPFLGICLGMQL 387
                 489**********88888875.6666665...79*********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 4266.68
//
Query:       EGE25537.1  [L=355]
Description: cbb3-type cytochrome c oxidase subunit CcoP [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-27   95.2   0.3    2.8e-13   50.0   0.0    2.3  2  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    6.5e-22   77.0   1.5    6.5e-22   77.0   1.5    2.2  2  FixP_N           N-terminal domain of cytochrome oxidase-cbb3
    2.5e-16   60.6   0.8    6.3e-07   30.5   0.0    3.7  3  Cytochrom_C      Cytochrome c
      5e-05   23.0   0.6       0.15   11.8   0.0    3.3  4  Cytochrom_C550   Cytochrome c-550 domain
  ------ inclusion threshold ------
      0.019   13.6   0.1        4.3    5.8   0.0    2.2  2  DHOR             Di-haem oxidoreductase, putative peroxidase
      0.064   12.5   0.6        7.7    5.7   0.0    2.2  2  Trypan_glycop    Trypanosome variant surface glycoprotein (A-
       0.28   11.8   0.8         11    6.7   0.1    2.6  2  PSCyt1           Planctomycete cytochrome C


Domain annotation for each model (and alignments):
>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1   1.3e-14   3.3e-11       3      67 .]     181     254 ..     179     254 .. 0.87
   2 !   50.0   0.0   1.1e-16   2.8e-13       2      67 .]     270     346 ..     269     346 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 1.3e-14
  Cytochrome_CBB3   3 aaaGaalykknCasCHg...kggag.pslagrdwep....dalvdiiknGk.gaMpafggqlsdeelwalvaYl 67 
                       + G +l+ +nCa CHg    g++g p+l+++dw +    d++  +i nG+ g M+a+++ql +  ++a+++Y+
       EGE25537.1 181 QKIGNRLFLQNCALCHGsnaRGALGyPDLTDNDWLYggnaDQILLTIHNGRvGSMAAWQQQLGESGVRAAAEYV 254
                      57899************55555555*******99966666**********889********************7 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 1.1e-16
  Cytochrome_CBB3   2 aaaaGaalykknCasCHgkggag......pslagr....dwepdalvdiiknGk.gaMpafggqlsdeelwalvaYl 67 
                      ++a+G+ l+++nC+ CHg++++g      p+l+++    + + da++++i++G+ g Mp ++++l +e +  l+aY+
       EGE25537.1 270 KVAQGKVLFEANCVVCHGPDAKGsaaigaPNLTDDiwlfGGDRDAVQTSIRHGRaGVMPEWQTKLGNERIMLLAAYV 346
                      689***************88777778999****9964444447**********9779*******************7 PP

>> FixP_N  N-terminal domain of cytochrome oxidase-cbb3, FixP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   5.7       6.4   1.6e+04      24      44 ..       4      24 ..       2      27 .. 0.78
   2 !   77.0   1.5   2.5e-25   6.5e-22       1      45 [.      36      80 ..      36      83 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 6.4
      FixP_N 24 lylFyativfavvYlilYpal 44
                ++  ++ti+   ++l+++ +l
  EGE25537.1  4 FWSSWITILSLGCWLFIFGVL 24
                688899999999998888765 PP

  == domain 2  score: 77.0 bits;  conditional E-value: 2.5e-25
      FixP_N  1 gdettgHeWDGIrElnnplPrWWlylFyativfavvYlilYpalg 45
                +dettgH++DGIrE+++plP+WWl++F++t++++++Y+il+p ++
  EGE25537.1 36 EDETTGHSYDGIREYDKPLPKWWLVIFFGTMIWGLGYFILFPSIQ 80
                68****************************************985 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.2   1.6e+04      33      33 ..     150     150 ..     111     174 .. 0.54
   2 !   25.6   0.1   8.3e-09   2.1e-05       3      76 ..     183     242 ..     181     258 .. 0.66
   3 !   30.5   0.0   2.5e-10   6.3e-07       1      54 [.     271     324 ..     271     350 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.2
                  H CS
  Cytochrom_C  33 g 33 
                  g
   EGE25537.1 150 G 150
                  1 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 8.3e-09
                  -HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHH..HHHTTSS--SSSHHHHHHHGGGGGGG.TT- CS
  Cytochrom_C   3 rGkelftanCaaCHgvegggakqgggptlsgaaerasaasigas..vanpaavsaprddfekkkltaemparkerl 76 
                   G +lf +nCa CHg +++ga +  +p+l+++ + ++++ ++    ++n++  s  ++ +              +l
   EGE25537.1 183 IGNRLFLQNCALCHGSNARGALG--YPDLTDNDWLYGGNADQILltIHNGRVGSMAAWQQ--------------QL 242
                  699***77*************86..6********99877666540044443333333333..............33 PP

  == domain 3  score: 30.5 bits;  conditional E-value: 2.5e-10
                  X--HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS- CS
  Cytochrom_C   1 aarGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavs 54 
                  +a+Gk lf+anC+ CHg++++g ++ g+p+l++ ++  +++ +  + +  + + 
   EGE25537.1 271 VAQGKVLFEANCVVCHGPDAKGSAAIGAPNLTDDIWLFGGDRDAVQTSIRHGRA 324
                  589******************************999999988877766665444 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.58   1.5e+03      89     119 ..     141     171 ..     137     185 .. 0.82
   2 !    7.2   0.2    0.0015       3.9      26      42 ..     181     197 ..     172     203 .. 0.83
   3 !   11.8   0.0   5.9e-05      0.15      12      41 ..     257     286 ..     244     298 .. 0.83
   4 ?   -3.7   0.0       3.4   8.7e+03     105     119 ..     332     346 ..     321     352 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.58
                     TTTSSSCCGTTTTGGGTTS-HHHHHHHHHHH CS
  Cytochrom_C550  89 aelhpslksadiypelrnltdedlkaiagyi 119
                     ++l + +k  ++ +el++  de++k +a y+
      EGE25537.1 141 NDLQSQRKAGEENAELQTQIDEQVKLLAPYV 171
                     5666778888999999999999999999997 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0015
                     HHHHHHHHHHHTHHHHG CS
  Cytochrom_C550  26 lkkgkklFeaeCaqCHv 42 
                      k g++lF ++Ca CH 
      EGE25537.1 181 QKIGNRLFLQNCALCHG 197
                     4679************5 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 5.9e-05
                     SSTTS-EEEEEHHHHHHHHHHHHHHTHHHH CS
  Cytochrom_C550  12 lneegetvtlseeqlkkgkklFeaeCaqCH 41 
                     l  + +   l ++++++gk lFea+C  CH
      EGE25537.1 257 LSGNQNDYELDAAKVAQGKVLFEANCVVCH 286
                     4555567788999***************** PP

  == domain 4  score: -3.7 bits;  conditional E-value: 3.4
                     TTS-HHHHHHHHHHH CS
  Cytochrom_C550 105 rnltdedlkaiagyi 119
                     ++l +e +  +a+y+
      EGE25537.1 332 TKLGNERIMLLAAYV 346
                     578899999999997 PP

>> DHOR  Di-haem oxidoreductase, putative peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0017       4.3      47     106 ..     168     227 ..     128     256 .. 0.75
   2 ?    5.8   0.0    0.0017       4.4     352     379 ..     265     291 ..     246     305 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0017
        DHOR  47 tdfttapnsesaeldgLGpvfnnasCnsChakdGRsstpvleadeervklk.sneaiflri 106
                  +++++ +s  +e +++G     ++C  Ch  + R+++   +  +++  ++ + + i+l i
  EGE25537.1 168 APYVDKLASD-PEAQKIGNRLFLQNCALCHGSNARGALGYPDLTDNDWLYGgNADQILLTI 227
                 5667777776.9999****999**************9876665554444440445555555 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0017
        DHOR 352 nvedaevieGaklFeqvgCaeChtpkft 379
                 +++ a+v +G+ lFe ++C  Ch p+ +
  EGE25537.1 265 ELDAAKVAQGKVLFE-ANCVVCHGPDAK 291
                 678899*****9996.8******99864 PP

>> Trypan_glycop  Trypanosome variant surface glycoprotein (A-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0042        11      21     109 ..      79     167 ..      77     169 .. 0.95
   2 ?    5.7   0.0     0.003       7.7     199     233 ..     191     230 ..     177     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0042
  Trypan_glycop  21 ikkaawkplCtlskelkkvagralqqlealaakitnlekkllklqIyakkkstaseakaalllaayvrkeaaaarkeveklaktavtaa 109
                    i+ ++wk + t+  + ++v+   + +l++++++ +   ++  + +I+  + +++++  +a l  ++ +++a + ++e+++ ++++v+  
     EGE25537.1  79 IQPNTWKGVTTVEVDGESVPWTSANELNSQLQANNRVFTENFEQNILENAGASEATVVLAKLNDLQSQRKAGEENAELQTQIDEQVKLL 167
                    8999****************************************************************************999999876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.003
  Trypan_glycop 199 gCkLtkgasangllgggsleaalkvagG.....lltigat 233
                    +C+L +g++a g+lg+ +l+++ ++ gG     llti++ 
     EGE25537.1 191 NCALCHGSNARGALGYPDLTDNDWLYGGnadqiLLTIHNG 230
                    8***************************999988899875 PP

>> PSCyt1  Planctomycete cytochrome C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.065   1.7e+02       1      11 [.     192     204 ..     192     230 .. 0.71
   2 ?    6.7   0.1    0.0044        11       1      10 [.     282     291 ..     282     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.065
      PSCyt1   1 CyeCHgpdda..e 11 
                 C  CHg+++    
  EGE25537.1 192 CALCHGSNARgaL 204
                 999***9987544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0044
      PSCyt1   1 CyeCHgpdda 10 
                 C+ CHgpd++
  EGE25537.1 282 CVVCHGPDAK 291
                 9*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 2978.95
//
Query:       EGE25538.1  [L=60]
Description: cbb3-type cytochrome c oxidase subunit CcoQ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-11   42.2   0.0    7.2e-11   41.9   0.0    1.1  1  FixQ      Cbb3-type cytochrome oxidase component FixQ


Domain annotation for each model (and alignments):
>> FixQ  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0     4e-15   7.2e-11      10      48 ..       6      44 ..       4      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 4e-15
        FixQ 10 adswgllflvllfygvviyafrpgnrkdfedaAnlpLkd 48
                 +s+ +++ +++f+g+ ++a+ p+n+k+fe+ A+l+L+d
  EGE25538.1  6 LHSIATVAAFITFIGIAWWAYSPKNKKRFEEDAQLALDD 44
                68999********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 465.19
//
Query:       EGE25539.1  [L=212]
Description: cbb3-type cytochrome c oxidase subunit II [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-80  268.5   0.2    9.4e-77  257.3   0.0    2.0  2  FixO         Cytochrome C oxidase, mono-heme subunit/FixO
    0.00048   21.2   0.0     0.0019   19.3   0.0    1.9  1  Cytochrom_C  Cytochrome c


Domain annotation for each model (and alignments):
>> FixO  Cytochrome C oxidase, mono-heme subunit/FixO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.3   0.0     1e-80   9.4e-77       1     177 [.       6     189 ..       6     192 .. 0.93
   2 !   10.7   0.1     3e-05      0.26     199     215 ..     190     206 ..     183     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 257.3 bits;  conditional E-value: 1e-80
        FixO   1 hellekkpllllvlvlvvvaigglveivPlllvkstvek......vesvkpytpleleGrdiyiregCyaCHsqmiRplrdeveRyGeyskagEsvydh 93 
                 hel+ek++ ll+++++++v++++lveivPl++ ++ +e+      + +++p+t+leleGrdiyiregC +CH+qmiRplr+eveRyG ys+a+Es++dh
  EGE25539.1   6 HELVEKNTGLLVIFIVIAVSFATLVEIVPLIYDETVAEEggvnkpMPNMRPWTALELEGRDIYIREGCHVCHTQMIRPLRAEVERYGPYSRAAESTWDH 104
                 8899**************************996544433321113667*************************************************** PP

        FixO  94 PflWgskRtGPDlaRvGgkysdeWhvkHlldPrsvvpesimPaykwllekkldlseiekklkalk.tlgvpyeeeeieeakadlk 177
                 PflWgskRtGPDlaRvGg+ysd+Whv+Hl+dPrsvvpes+mP+y+wl++++++ +++++k++ +k  +g py+e++ie a ++++
  EGE25539.1 105 PFLWGSKRTGPDLARVGGRYSDQWHVDHLTDPRSVVPESVMPSYPWLATNEVNGTKVQEKMRLFKdRFGLPYTEADIEAAPDQVQ 189
                 ***************************************************************9989**********99988765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 3e-05
        FixO 199 ekkeivaliaYlqrlGt 215
                   +e++al+aYlq+lG 
  EGE25539.1 190 GATELDALVAYLQQLGI 206
                 479************96 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.1e-07    0.0019       3      91 ..      63     204 ..      62     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.1e-07
                  -HHHHH.HTTGGGTB-SSSBSSS.............................--HHHHHHHTTT-HHHHHHHHTTSS--S..........SSHHHHHH CS
  Cytochrom_C   3 rGkelf.tanCaaCHgvegggakqgg.........................gptlsgaaerasaasigasvanpaavsap..........rddfekkk 64 
                  +G+ ++  ++C  CH+   +   +                           gp+l++++ r+s ++++   ++p+ v             +       
   EGE25539.1  63 EGRDIYiREGCHVCHTQMIRPLRAEVerygpysraaestwdhpflwgskrtGPDLARVGGRYSDQWHVDHLTDPRSVVPEsvmpsypwlaT------- 153
                  69999*99*******888877776667899********************************************98888855555444433....... PP

                  HGGGGGGG............................TT--HHHHHHHHHHHHTT CS
  Cytochrom_C  65 ltaempark...........................erlteqeiadlaaYLksl 91 
                     +  +                             +     e+++l+aYL++l
   EGE25539.1 154 ---NEVNGTkvqekmrlfkdrfglpyteadieaapdQVQGATELDALVAYLQQL 204
                  ...43333344444666669999999999**999954445699********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1585.91
//
Query:       EGE25540.1  [L=493]
Description: cbb3-type cytochrome c oxidase subunit I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-114  382.6  67.8   2.8e-114  382.3  67.8    1.0  1  COX1      Cytochrome C and Quinol oxidase polypeptide I


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.3  67.8  1.6e-118  2.8e-114       2     431 ..      21     450 ..      20     451 .. 0.95

  Alignments for each domain:
  == domain 1  score: 382.3 bits;  conditional E-value: 1.6e-118
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCTCT......-HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSS-S-HHHHHHHHH....HHHHHH CS
        COX1   2 igllylilalvlllvggllgllirlqlafp......dletynqlrtlHgnlmiflfatpfilgfgnylvplllgardlafprlnalsfw....lvvlgv 90 
                 i++ ++i+a+++++vg+++g++i+ qla+p      + +++++lr+lH+n++if+f +++++++++y+v++++++r l+ p+l++++fw    ++v +v
  EGE25540.1  21 IVRFFTIMAVFWGIVGMAVGVFIASQLAWPvlnfdtSWLSFGRLRPLHTNAVIFAFGGSALFATSYYIVQRTCKTR-LFAPYLAWFTFWgwqaVIVSAV 118
                 8999*************************988887666***********************************666.55666*********98888888 PP

                 HHHHHHHHCSS-STTTTTTTC.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHCT-S CS
        COX1  91 vllllsllgaattgwteYaplsevdlwllglllvvvssllgainfivtilkrrapgmtvaklplfvwavlatailillalpvlalalllllldrslgkf 189
                 ++l l++    t   +eYa   e + w+++++++ v++  +ai f+ t++kr++++++va     +w+++a++i+i+l+++v+ l +++ l+     k+
  EGE25540.1 119 ITLPLGV----TSA-KEYA---ELE-WPIDIAIALVWVA-YAIVFFGTLIKRQTSHIYVA-----NWFFAAFIITIALLHIVNSLVVPVGLF-----KS 197
                 8899999....555.9***...89*.***********99.********************.....************************885.....78 PP

                 SSCE-HHHHHHHHHHHHTHHH.HHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHCCCCGGGGTTTSSS-HHHHHHHHHHHHHTHHHHHHCCC CS
        COX1 190 fspgdplldqhlfWffgHpeV.yililpalgivyyilpkfagrplfsyklsvlafililflsflvwaHHlfttglpewlkalgsvfslliavPsglkvf 287
                 +s + +++d++++W++gH++V ++l+  +lg++yy++p+++grp++sy+ls+++f++++  ++++++HHl++++lp+w+++lg+vfsl++++Ps+++++
  EGE25540.1 198 YSLFGGATDAMVQWWYGHNAVgFYLTAAFLGMMYYFIPVQIGRPVYSYRLSIVHFWALIASYMWAGGHHLHYSALPDWTQSLGMVFSLILFAPSWGGMI 296
                 8899*********************************************************************************************** PP

                 HHHHCCTTS-CH.C.HHHHHHHHHHHHHH.HHHHHHHHHHTSHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH..SB--HHHHHHHHHH CS
        COX1 288 nwlatlwrgsir.f.ktpmlfflgfavlf.iigGltGvllalpsvnyvvhntywvvaHfHlvllgavvfllfaaiyyllpklt..grmlserlaklhfw 381
                 n+++tl +gs++ + ++p+++fl++a+ f  +++++G++l++++vn+++hnt+w+v+H+H ++lg+v++++++ iy llp+++   +m+s+ l+ lhfw
  EGE25540.1 297 NGVLTL-SGSWDkLrTDPIIRFLIVALSFyAMSTFEGPMLSIKAVNAISHNTDWTVGHVHSGALGWVGMITIGSIYVLLPRIFnkAKMYSTSLITLHFW 394
                 ******.99***999********************************************************************744699********** PP

                 HHHHHHHHHHHHHHHHHHT.THBSSSST......--SCCCCHHHCHHHHHHHHHHHH CS
        COX1 382 llfiGlvlmflpmhilGll.gmprraad......yksfletvpelqplnvlrtiggv 431
                 l+++G+vl++++++i+G++ gm++ra +      y +f++tv   ++ +v+r++gg+
  EGE25540.1 395 LATTGTVLYIVALWISGITqGMMWRATNpdgtlaY-DFIQTVVVSHWPYVVRALGGA 450
                 ***************************75666667.9******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3679.48
//
Query:       EGE25541.1  [L=53]
Description: hypothetical protein EA1_06393 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 396.86
//
Query:       EGE25542.1  [L=127]
Description: hypothetical protein EA1_06398 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00012   22.6   0.2    0.00015   22.2   0.2    1.3  1  SCP2      SCP-2 sterol transfer family
  ------ inclusion threshold ------
      0.042   13.6   0.0      0.056   13.2   0.0    1.3  1  NTF-like  Nucleotidyltransferase-like


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   1.7e-08   0.00015      35      98 ..      44     107 ..      10     109 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.7e-08
                 EEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTS..S-HHHHHHTTSSEEEC-HHHHHHHHH CS
        SCP2  35 ltldlkegqldvaakdegkadvtlslsledllelaegk..lnpqkafmqgkLkieGDielaqklea 98 
                   l lkeg++    +  + a  t+++++e+l +l+      ++ +afm gk++i+GD+   + l++
  EGE25542.1  44 AKLHLKEGKIFQ--GLTENAISTVTVDSETLSQLIATGdaNQAIEAFMLGKIRIDGDMSQIMTLQS 107
                 455556543333..33358889**********9975543345699*****************9986 PP

>> NTF-like  Nucleotidyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.3e-06     0.056      61     100 ..      59      98 ..      52     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.3e-06
                 TEEEEEEEEEHHHHHHHHHHT--HHHHHHHHHSEEEEEST CS
    NTF-like  61 ekkaalhvvseeqLeewlllgsnrrlvdwlleGkilfdrn 100
                 e+ +++ +v+ e+L++ + +g+ +++++  + Gki +d +
  EGE25542.1  59 ENAISTVTVDSETLSQLIATGDANQAIEAFMLGKIRIDGD 98 
                 6778999****************************88865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 966.55
//
Query:       EGE25543.1  [L=483]
Description: cbb3-type cytochrome c oxidase accessory protein CcoG [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-44  149.7  10.2    1.3e-43  147.8  10.2    2.0  1  Fer4_18    4Fe-4S dicluster domain
    6.5e-24   84.4   0.1    9.4e-24   83.9   0.1    1.2  1  FixG_C     IG-like fold at C-terminal of FixG, putative oxido
    8.7e-11   41.6   0.8    8.7e-11   41.6   0.8    5.0  5  Fer4_5     4Fe-4S binding domain
    2.3e-10   40.9   6.8    4.1e-06   27.3   2.1    3.1  3  Fer4_7     4Fe-4S dicluster domain
    4.9e-09   36.2   8.8    1.4e-05   25.2   1.3    3.2  3  Fer4_9     4Fe-4S dicluster domain
      5e-08   33.4   9.3    0.00015   22.3   0.9    3.0  3  Fer4_17    4Fe-4S dicluster domain
    1.5e-07   31.7   4.8    0.00075   19.9   1.0    3.1  3  Fer4_8     4Fe-4S dicluster domain
    1.4e-06   28.3   8.8     0.0011   19.1   1.8    3.1  3  Fer4_10    4Fe-4S dicluster domain
    5.3e-05   24.1  11.2    0.00045   21.1   0.8    2.9  2  Fer4_16    4Fe-4S double cluster binding domain
     0.0032   17.6  17.9       0.12   12.5   6.1    3.2  2  Fer4_21    4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.015   15.1   5.0      0.015   15.1   5.0    3.8  4  Fer4       4Fe-4S binding domain
      0.028   14.1   0.4      0.059   13.1   0.4    1.4  1  MotA_ExbB  MotA/TolQ/ExbB proton channel family
      0.036   14.2  24.2       0.17   12.0   5.5    3.5  3  Fer4_6     4Fe-4S binding domain
       0.17   12.5  23.5       0.94   10.1   2.7    3.8  4  Fer4_4     4Fe-4S binding domain
        1.7    9.7  28.7        1.1   10.3   5.9    4.1  4  Fer4_3     4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8  10.2   1.1e-46   1.3e-43       1     113 [.     222     325 ..     222     326 .. 0.94

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 1.1e-46
     Fer4_18   1 lredvcvyvcPyarvqsvlydeetllvvydakrGekiagrkkekkalkekeerkekgagdcidcescvkvcPtgidirkGlqleciscllcidacdkvm 99 
                 +re++cvy+cPy+r+qsv++d++tl+v+yd++rGe +  rkk          ++ +g gdc+dc +cv+vcPtgidir+Glq+eci+c+ cidac+++m
  EGE25543.1 222 MREHMCVYICPYGRFQSVMFDKDTLIVSYDYERGEPRGARKKD---------TTPAGYGDCVDCTMCVQVCPTGIDIRNGLQVECIQCAACIDACNEIM 311
                 79*********************************98766543.........346899***************************************** PP

     Fer4_18 100 eklgkpkgliryss 113
                 +k+g+p+gliry++
  EGE25543.1 312 DKVGYPRGLIRYTT 325
                 ************97 PP

>> FixG_C  IG-like fold at C-terminal of FixG, putative oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.1   7.8e-27   9.4e-24       3     118 ..     358     474 ..     356     475 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 7.8e-27
                 XXXXX--SEEEEEEE-SS---------SEEEEEEEEEEE-SSS-EEEEEEEES-S..S-EE.E.S--EEEE-TT-EEEEEEEEEE-GGG-SSSEEEEEE CS
      FixG_C   3 yalatreplelnvlrdrgplyvevsdgsieNsYtlkilNktekprrytlsveglp..glelagraekeitvapgekrkvpvfvrvpaealkkkstpitf 99 
                 + l++r ple+++ +dr++l+  + dg++eNsY lki+Nkt++++ y+++++ ++  g++l   + ke+ +++ e  ++pv++  +++ +k++stp+t+
  EGE25543.1 358 MVLVSRAPLEMEIRHDRKQLSTIRRDGMVENSYVLKIVNKTNERQVYQVRLDAENtaGMTL-RSRFKELPLQASELYDLPVSIIGDPNIIKPGSTPVTI 455
                 5699***********************************************9754459999.5569********************************* PP

                 EEEEGGGTEEEEEEEEEE- CS
      FixG_C 100 kvtdddeketverksrFvg 118
                 +v+ +d++ +++++++F++
  EGE25543.1 456 TVYSKDGQYSASAQDVFIY 474
                 **9668899********97 PP

>> Fer4_5  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.4       2.5     3e+03       4      18 ..      48      62 ..      46      67 .. 0.70
   2 !   41.6   0.8   7.3e-14   8.7e-11       2      40 ..      95     136 ..      94     146 .. 0.85
   3 ?    5.2   3.4     0.017        20       7      39 ..     206     242 ..     200     248 .. 0.70
   4 ?   -2.9   0.7         6   7.2e+03      24      32 ..     279     287 ..     279     287 .. 0.85
   5 ?   -0.3   0.6      0.89   1.1e+03       2      22 ..     344     364 ..     343     364 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.5
      Fer4_5  4 lllilflaivlvtll 18
                ++++++l++++ ++l
  EGE25543.1 48 SMYLILLGFLIAPWL 62
                577888888877776 PP

  == domain 2  score: 41.6 bits;  conditional E-value: 7.3e-14
      Fer4_5   2 allllilflaivlvtllfGRafCgWiCPfGalqellak...l 40 
                 a++++i +l ++ vt++ GR++Cg++CP++++ +l+++   +
  EGE25543.1  95 AFVFIIAALMLFMVTVYAGRVWCGYACPQTIYVHLYQHvekW 136
                 7899999****************************9985553 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.017
      Fer4_5   7 ilflaivlvtll...fGR.afCgWiCPfGalqellak 39 
                 i+f++iv+vt       R   C +iCP+G +q ++++
  EGE25543.1 206 IFFILIVFVTQTnagYMReHMCVYICPYGRFQSVMFD 242
                 455555555544545335577**********998886 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 6
      Fer4_5  24 CgWiCPfGa 32 
                 C  +CP G+
  EGE25543.1 279 CVQVCPTGI 287
                 8889**986 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.89
      Fer4_5   2 allllilflaivlvtllfGRa 22 
                 a+++++l+++i ++++l+ Ra
  EGE25543.1 344 AYTGVLLACIIAATMVLVSRA 364
                 67899999*****99998875 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.7   3.2e+03       8      15 ..     117     124 ..     115     150 .. 0.69
   2 !   27.3   2.1   3.5e-09   4.1e-06       7      52 .]     226     287 ..     225     287 .. 0.60
   3 !   14.5   0.1   3.5e-05     0.042       2      23 ..     297     327 ..     296     415 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.7
      Fer4_7   8 CvaaCpvk 15 
                 C  aCp+ 
  EGE25543.1 117 CGYACPQT 124
                 67777744 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 3.5e-09
      Fer4_7   7 aCvaaCpvkaield.........eeenek....gt...ekveidpekClgCgaCvavCPtga 52 
                  Cv  Cp++ ++            +++e+    g    +++   + +C++C++Cv+vCPtg+
  EGE25543.1 226 MCVYICPYGRFQSVmfdkdtlivSYDYERgeprGArkkDTTPAGYGDCVDCTMCVQVCPTGI 287
                 7******9999855333334433222233222222221333455678*************96 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 3.5e-05
      Fer4_7   2 CigCgaCvaaC.........pvkaieldeee 23 
                 Ci+C aC +aC         p + i+++ e 
  EGE25543.1 297 CIQCAACIDACneimdkvgyPRGLIRYTTER 327
                 ***********88888888866666555433 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.96   1.1e+03       8      18 ..     117     127 ..     114     141 .. 0.80
   2 !   25.2   1.3   1.2e-08   1.4e-05       7      49 ..     226     286 ..     224     287 .. 0.88
   3 !   13.5   0.4   5.1e-05     0.061       2      17 ..     297     312 ..     291     353 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.96
      Fer4_9   8 CveaCpagvvv 18 
                 C +aCp++++v
  EGE25543.1 117 CGYACPQTIYV 127
                 77888888765 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.2e-08
      Fer4_9   7 aCveaCpagvvvedaaerkarlraase..................eaCigCgaCveaCpkg 49 
                  Cv+ Cp+g ++   + +   +  +++                   +C++C  Cv++Cp+g
  EGE25543.1 226 MCVYICPYGRFQSVMFDKDTLIVSYDYergeprgarkkdttpagyGDCVDCTMCVQVCPTG 286
                 7*****99999888888887777777778999999**********99************98 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 5.1e-05
      Fer4_9   2 CtgCgaCveaCpagvv 17 
                 C++C aC++aC+  + 
  EGE25543.1 297 CIQCAACIDACNEIMD 312
                 7777777777744444 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       2.2   2.7e+03      52      60 ..     117     125 ..     116     126 .. 0.86
   2 !   22.3   0.9   1.2e-07   0.00015       7      61 .]     226     288 ..     223     288 .. 0.71
   3 !   15.3   0.3   1.9e-05     0.022       1      37 [.     296     333 ..     296     346 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.2
     Fer4_17  52 CerkCPqgl 60 
                 C ++CPq +
  EGE25543.1 117 CGYACPQTI 125
                 999***976 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 1.2e-07
     Fer4_17   7 yClpeCpsyea..ydnepkkllraakl..glleeaeke....ekaslCieCgeCerkCPqgld 61 
                 +C+  Cp+++     +++++l+  + +  g+ ++a k+       ++C+ C +C+++CP g+d
  EGE25543.1 226 MCVYICPYGRFqsVMFDKDTLIVSYDYerGEPRGARKKdttpAGYGDCVDCTMCVQVCPTGID 288
                 89*****9777334456777777766655334443333344479****************997 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 1.9e-05
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepkkllraakl.glleea 37 
                 +CiqC++C+++C   ++   +p+ l+r ++  +l+e++
  EGE25543.1 296 ECIQCAACIDACNEIMDKVGYPRGLIRYTTErQLVEKQ 333
                 6*************999999999877665442455554 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         2   2.3e+03      11      34 ..     117     146 ..     116     163 .. 0.69
   2 !   19.9   1.0   6.2e-07   0.00075      10      65 .]     226     287 ..     223     287 .. 0.65
   3 !   11.7   0.1   0.00023      0.27       4      34 ..     296     327 ..     294     379 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2
      Fer4_8  11 CqsaCp......vlrrtkkhlldargeaae 34 
                 C  aCp      ++++  k++l  r+++++
  EGE25543.1 117 CGYACPqtiyvhLYQHVEKWILGERNKRIK 146
                 667786555555777777777777777766 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 6.2e-07
      Fer4_8  10 aCqsaCp.............vlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvgi 65 
                 +C   Cp             ++ + + ++ ++rg +++ + +        + + C+ c +C++vCp+gi
  EGE25543.1 226 MCVYICPygrfqsvmfdkdtLIVSYDYERGEPRGARKK-DTTP------AGYGDCVDCTMCVQVCPTGI 287
                 58888987777764444443222233555555555555.4444......469**************997 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00023
      Fer4_8   4 kCieCgaCqsaCpvlrrtk.khlldargeaae 34 
                 +Ci+C aC +aC  + ++    +   r+  + 
  EGE25543.1 296 ECIQCAACIDACNEIMDKVgYPRGLIRYTTER 327
                 6***********74443332444444444443 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.1   1.3e+03      15      24 ..     117     133 ..     116     157 .. 0.63
   2 !   19.1   1.8   9.1e-07    0.0011      15      56 .]     227     284 ..     223     284 .. 0.83
   3 !   11.7   0.3   0.00018      0.21       8      19 ..     296     307 ..     285     353 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.1
     Fer4_10  15 CvkaCPadl.......t 24 
                 C  aCP+++        
  EGE25543.1 117 CGYACPQTIyvhlyqhV 133
                 77799997666554430 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 9.1e-07
     Fer4_10  15 CvkaCPadl................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 Cv  CP+                   + g    a ++++   ++++C +c++Cv++CP
  EGE25543.1 227 CVYICPYGRfqsvmfdkdtlivsydYERGEPRGARKKDTTPAGYGDCVDCTMCVQVCP 284
                 9999*9988999*******999998555555555566666667**************9 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00018
     Fer4_10   8 tCirCgkCvkaC 19 
                  Ci+C++C +aC
  EGE25543.1 296 ECIQCAACIDAC 307
                 466666666666 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.8   3.8e-07   0.00045       8      66 ..     227     285 ..     224     286 .. 0.83
   2 !   10.0   0.3    0.0011       1.3       2      13 ..     297     308 ..     296     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.8e-07
     Fer4_16   8 CaevCPtnaikekkekeieare...cisyntaekkdlaedeekckkqeaitgCdiCqdvCPa 66 
                 C+ +CP + +++    ++++++   + +y+  e ++++++  +   ++++  C +C++vCP 
  EGE25543.1 227 CVYICPYGRFQSV---MFDKDTlivSYDYERGEPRGARKKDTTPAGYGDCVDCTMCVQVCPT 285
                 ************9...6666664335555888889999999999999**************6 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0011
     Fer4_16   2 CgtCgkCaevCP 13 
                 C++C +C+++C 
  EGE25543.1 297 CIQCAACIDACN 308
                 ***********5 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   6.1    0.0001      0.12      14      53 ..     227     285 ..     224     290 .. 0.66
   2 !   11.8   0.8   0.00017       0.2       7      20 ..     296     309 ..     293     327 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0001
     Fer4_21  14 CliaCedtshqaieidaktvl...................kvvedeCvGCnlCssvCPv 53 
                 C+  C+ +  q + +d++t +                   +    +Cv C++C++vCP+
  EGE25543.1 227 CVYICPYGRFQSVMFDKDTLIvsydyergeprgarkkdttPAGYGDCVDCTMCVQVCPT 285
                 6677777777777666665444555555555555555433555789************6 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00017
     Fer4_21   7 kCigCgkCliaCed 20 
                 +Ci+C  C+ aC++
  EGE25543.1 296 ECIQCAACIDACNE 309
                 7***********97 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2         3   3.6e+03      14      19 ..     117     122 ..     116     123 .. 0.81
   2 ?    4.2   0.3     0.035        42      13      21 ..     226     234 ..     225     234 .. 0.90
   3 ?   15.1   5.0   1.3e-05     0.015       6      21 ..     271     286 ..     270     287 .. 0.91
   4 ?    5.4   7.1     0.015        18       7      18 ..     296     307 ..     295     307 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3
                 HHHHST CS
        Fer4  14 CvevCP 19 
                 C  +CP
  EGE25543.1 117 CGYACP 122
                 8889*9 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.035
                 HHHHHSTTT CS
        Fer4  13 aCvevCPvg 21 
                  Cv +CP+g
  EGE25543.1 226 MCVYICPYG 234
                 6******97 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.3e-05
                 TTSSS-THHHHHSTTT CS
        Fer4   6 ekCigCGaCvevCPvg 21 
                  +C+ C  Cv+vCP+g
  EGE25543.1 271 GDCVDCTMCVQVCPTG 286
                 58*************8 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.015
                 TSSS-THHHHHS CS
        Fer4   7 kCigCGaCvevC 18 
                  Ci C aC+++C
  EGE25543.1 296 ECIQCAACIDAC 307
                 5*********** PP

>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   4.9e-05     0.059      89     114 ..     157     182 ..     151     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  89 giaeALiaTalGlvvAipavlaynkl 114
                  i +ALi T++G++ Ai av ++ ++
  EGE25543.1 157 IIKTALIHTIWGVFSAITAVTFIAFI 182
                 699******************98875 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.031        36      15      23 ..     227     235 ..     224     236 .. 0.88
   2 ?   12.0   5.5   0.00014      0.17       9      22 ..     273     286 ..     271     287 .. 0.94
   3 ?    6.0   5.6     0.011        13       9      21 ..     297     309 ..     297     311 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.031
      Fer4_6  15 CvrvCPega 23 
                 Cv +CP+g 
  EGE25543.1 227 CVYICPYGR 235
                 ******985 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00014
      Fer4_6   9 CigCgdCvrvCPeg 22 
                 C++C  Cv vCP+g
  EGE25543.1 273 CVDCTMCVQVCPTG 286
                 ************98 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.011
      Fer4_6   9 CigCgdCvrvCPe 21 
                 Ci+C +C+++C e
  EGE25543.1 297 CIQCAACIDACNE 309
                 ***********65 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.5       7.9   9.4e+03      12      16 ..     119     123 ..     117     124 .. 0.72
   2 ?    5.8   0.1     0.019        23       9      17 .]     226     234 ..     222     236 .. 0.87
   3 ?    9.7   2.6    0.0011       1.4       4      17 .]     273     286 ..     263     286 .. 0.91
   4 ?   10.1   2.7   0.00079      0.94       4      14 ..     297     307 ..     294     313 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.9
      Fer4_4  12 aaCPq 16 
                 +aCPq
  EGE25543.1 119 YACPQ 123
                 78997 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.019
      Fer4_4   9 sCvaaCPqg 17 
                  Cv++CP+g
  EGE25543.1 226 MCVYICPYG 234
                 5******86 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0011
      Fer4_4   4 CigCgsCvaaCPqg 17 
                 C++C  Cv +CP+g
  EGE25543.1 273 CVDCTMCVQVCPTG 286
                 ************86 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00079
      Fer4_4   4 CigCgsCvaaC 14 
                 Ci+C +C++aC
  EGE25543.1 297 CIQCAACIDAC 307
                 *********** PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2       1.7     2e+03       7      12 ..     117     122 ..     113     124 .. 0.85
   2 ?    5.7   0.1     0.028        34       7      14 ..     227     234 ..     221     234 .. 0.91
   3 ?   10.3   5.9   0.00094       1.1       1      14 [.     273     286 ..     273     287 .. 0.90
   4 ?    4.2   5.9     0.085     1e+02       1      11 [.     297     307 ..     297     307 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.7
      Fer4_3   7 CvevCP 12 
                 C  +CP
  EGE25543.1 117 CGYACP 122
                 889999 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.028
      Fer4_3   7 CvevCPvg 14 
                 Cv  CP+g
  EGE25543.1 227 CVYICPYG 234
                 ******97 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00094
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 C+ C  Cv+vCP+g
  EGE25543.1 273 CVDCTMCVQVCPTG 286
                 889988******99 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.085
      Fer4_3   1 CtgCgaCvevC 11 
                 C++C aC ++C
  EGE25543.1 297 CIQCAACIDAC 307
                 *********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1008  (0.0562218); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3400.17
//
Query:       EGE25544.1  [L=210]
Description: hypothetical protein EA1_06408 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-27   94.5   0.1    9.8e-27   93.8   0.1    1.2  1  FixH             FixH
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.013   15.3   0.0    1.2  1  Cation_ATPase_C  Cation transporting ATPase, C-terminus
       0.17   12.0   0.4       0.33   11.1   0.4    1.4  1  CrgA             Cell division protein CrgA


Domain annotation for each model (and alignments):
>> FixH  FixH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.1   1.6e-30   9.8e-27       6     146 ..      18     173 ..      14     176 .. 0.94

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 1.6e-30
        FixH   6 whvllflialfavvvvvnltmlylAvstkdglvvddyYkkGkainqelarakaaqalglsadvalde.............geltitlrd.aagkp.vea 89 
                 ++vl+f+i+l+++vvv++l++++++++ +d+ v+dd+Y++Gk+ +q+ +r++ a++lg+ + ++l+               + +++ ++ ++  p  ++
  EGE25544.1  18 YMVLIFVIGLPVLVVVICLFFIFYSIKIQDSTVRDDWYMDGKTLYQDSSRDQLAHDLGVFGVMRLSWhanttdirfelnyPTQNLSTQNfHNDTPlTYP 116
                 799*********************************************************99999999999*********88888888888888889** PP

        FixH  90 aaltlslshptdagkDkklkLteaangvYrapleal.lkGrWyvqlaaeeggeawrlq 146
                 ++l++++sh+td++kD++ ++++++++vY++++++   + ++y+q+ ++++ ++wrl 
  EGE25544.1 117 DELSVHISHATDDTKDRDFTIVHQKDNVYVGKVQLDdTPAKYYLQI-SSPKPQNWRLI 173
                 *******************************776559*********.*********86 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   2.1e-06     0.013      37      80 ..       4      47 ..       1     109 [. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.1e-06
  Cation_ATPase_C 37 pPr.kkkepliskkmlrriliqgllqalvtllvffltlllfgise 80
                      P+ +k+++++ k++++ i+++gl +++v++++ff+ ++++ i++
       EGE25544.1  4 TPKpNKQANIWYKNYMVLIFVIGLPVLVVVICLFFIFYSIK-IQD 47
                     44446*****************************9999844.222 PP

>> CrgA  Cell division protein CrgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   5.5e-05      0.33      26      52 ..       7      33 ..       2      40 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.5e-05
        CrgA 26 aakpsprwyvpvmlglmllGllwlvvy 52
                 +k+ + wy+  m+ ++++Gl  lvv+
  EGE25544.1  7 PNKQANIWYKNYMVLIFVIGLPVLVVV 33
                4678899**************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1505.63
//
Query:       EGE25545.1  [L=322]
Description: LysR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-17   61.7   0.5    3.4e-16   59.3   0.5    1.9  1  LysR_substrate  LysR substrate binding domain
    7.8e-17   61.0   0.4    1.6e-16   60.0   0.1    1.7  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.013   15.3   0.1      0.045   13.6   0.1    1.9  1  MarR_2          MarR family
      0.047   13.6   0.1       0.56   10.2   0.0    2.3  2  HTH_37          Helix-turn-helix domain
       0.12   12.1   0.1       0.32   10.8   0.1    1.8  1  HTH_8           Bacterial regulatory protein, Fis family
       0.15   11.9   0.1       0.31   10.9   0.1    1.5  1  HTH_10          HTH DNA binding domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.5   1.1e-19   3.4e-16       5     206 ..      96     307 ..      94     310 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.1e-19
                     CEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGG CS
  LysR_substrate   5 rgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsle 99 
                     ++ +ri +++++ ++l+p+l++++r + P+v l+  + +  +  d +++g++Dlai + ++ +++++ + ++++ + +++s+d   a++  +  +
      EGE25545.1  96 SRVFRIMTSDYAEATLVPRLVKALRSEAPNVILDFLTPSDVSYRD-MEQGRVDLAINRFNEIPQSFHQVLVWRDTFSCLLSADSSYANRFNLK-N 188
                     6789******************************99877555555.**************************************777765553.3 PP

                     GGCTSEEEEESTTST...........HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCC.HTTTEEEEEESSTTCE.E CS
  LysR_substrate 100 dLadeplilleegsg...........lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdel.adgrlvalplpepplp.r 181
                      L+ +   + + g g              ++++al++ g+k+++++ + ++++ + lva+ + ia lp+ ++r    ++++++ +  p++ +p +
      EGE25545.1 189 YLKAHHIWVSKTGMGvgfgvnpeksgGLGSIDQALQRLGQKRQISVFTRHYQMPAMLVANKDLIATLPTRVARLQAdNHPNII-IKEPPFFIPeF 282
                     3333333333555556666666666699********************************************95554899999.5555557777* PP

                     EEEEEEETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 182 elylvyrkgrelspavrafidflre 206
                     el +++ +  ++ pa r+++++++ 
      EGE25545.1 283 ELTMAWSPLLQHHPAHRWLRQLILH 307
                     *********************9976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.1   5.5e-20   1.6e-16       1      58 [.       8      65 ..       8      66 .. 0.96
   2 ?   -3.8   0.0       4.4   1.3e+04      32      48 ..     221     237 ..     218     238 .. 0.64

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 5.5e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTea 58
                l++l +++ + +e+++trAAe+Lg++qpa+s  ++rL++++++pL++R++ g+++Te+
  EGE25545.1  8 LNLLFYLDVLLREKNVTRAAEQLGITQPAMSNILRRLRSLFNDPLLVRSSEGMTPTER 65
                68899***************************************************97 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.4
                 HHHHHHHHHHTS-SEEE CS
       HTH_1  32 rqikrLEeelgvpLfeR 48 
                 ++++rL +  +   f+R
  EGE25545.1 221 QALQRLGQKRQISVFTR 237
                 67777777666666666 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.5e-05     0.045      14      47 ..      17      46 ..       7      47 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
                HHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 14 LgrrpgrdltvgelarrlglsksavsrilkrLva 47
                L r+     +v+  a+ lg++++a+s+il+rL +
  EGE25545.1 17 LLREK----NVTRAAEQLGITQPAMSNILRRLRS 46
                44444....8999******************975 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00019      0.56      35      58 ..      24      46 ..      17      53 .. 0.85
   2 ?    0.6   0.0      0.18   5.4e+02      65      79 ..     220     234 ..     216     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
                HHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37 35 seaaqllgiaqPkvsrllrgklsr 58
                + aa+ lgi+qP  s++lr +l++
  EGE25545.1 24 TRAAEQLGITQPAMSNILR-RLRS 46
                579***************8.6665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
                 HHHHHHTTEEEEEEE CS
      HTH_37  65 lnlltalGqkveivv 79 
                 +++l++lGqk +i+v
  EGE25545.1 220 DQALQRLGQKRQISV 234
                 799*******99998 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00011      0.32      14      33 ..      17      35 ..      14      44 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
                HHHTTT-HHHHHHHHTS-HH CS
       HTH_8 14 LertgGnkskAArlLGisRr 33
                L r + n+++AA+ LGi+  
  EGE25545.1 17 LLREK-NVTRAAEQLGITQP 35
                55566.9**********965 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0001      0.31      22      46 ..      19      43 ..      17      47 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
      HTH_10 22 RrvtlkeLAkelGIskstlsehLrk 46
                R+ ++   A++lGI+++++s++Lr+
  EGE25545.1 19 REKNVTRAAEQLGITQPAMSNILRR 43
                66677778****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2406.54
//
Query:       EGE25546.1  [L=166]
Description: hypothetical protein EA1_06418 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-16   59.9   0.3      1e-15   58.4   0.3    1.7  1  YkuD      L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.3   5.7e-20     1e-15       2     146 .]       5     165 ..       4     165 .. 0.74

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 5.7e-20
                 EEEEEETTTTEEEEEEETTEEEEEEE-BEB....TTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT........... CS
        YkuD   2 kyivvdlaeqrllvlyengklvlsfpvsvG....gkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskv........... 85 
                 ++iv+d+++ + l+ly+++ l+++f vs+     g+ eg   TPlG + i++k         p+ a + + +++++ ++ +  +n+             
  EGE25546.1   5 RRIVIDTQS-QCLTLYQGNILLRQFAVSTAkngtGQLEGTGCTPLGEHVIGQKIGGGL----PPNAVFVARQFTGELYDVQLGQNFPNrdwilgrilwl 98 
                 79*******.788****************999997777888**********5555544....3333333333333333332223333367889999999 PP

                 ..........CECCCCEEE-STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD  86 ..........algkvkfvfpngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                                  v+++ + iyiH  g+pd ++   g++ ShGC+r++ +++ +l+++v+vg+ v i
  EGE25546.1  99 egqingynhgVDKTGALVDTKLRYIYIH--GTPDTEPM--GRPMSHGCVRMRIDEIVWLFDKVEVGDLVLI 165
                 999899877755566667777788****..66655444..5688***********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1187.68
//
Query:       EGE25547.1  [L=448]
Description: argininosuccinate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-57  195.3   0.0    2.4e-57  195.0   0.0    1.0  1  Arginosuc_synth  Arginosuccinate synthase
     0.0032   17.0   0.0     0.0062   16.1   0.0    1.4  1  QueC             Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.0   0.0   2.6e-61   2.4e-57       2     367 ..      18     396 ..      17     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 195.0 bits;  conditional E-value: 2.6e-61
  Arginosuc_synth   2 LaysGGlDtsviikllkeklgeeviavavdvGqee.edldevkekalklgavksvvvDakeefvedyifpaikanalYedr....YllgtalaR 90 
                      +a+sGGlDts ++ ++k+k+ +   a+++++Gq++ +d +++ +ka+++gavk+ +vD++ + v++ i  ai+  a +       Y  +t l R
       EGE25547.1  18 IAFSGGLDTSAALLWMKQKG-ALPYAYTANLGQPDeDDYNAIPTKAKQYGAVKARLVDCRLQLVQEGI-AAIQCGAFHVTTggmpYFNTTPLGR 109
                      69***************999.7789********8615799************************9986.6899888776533334999****** PP

  Arginosuc_synth  91 PliakklvevakkegaeavahGctGkGnDqvRfevsirslaPdlkviaPvRelelt.....ReeeieyakekgipvevtkkkpysiDenllgrs 179
                       +   +lv + k+ + ++   G+t kGnD  Rf       +P+lk+  P+ +  +      R+e  ++  ++g + +++ +k ys+D n+lg +
       EGE25547.1 110 AVTGTMLVTAMKEDDVHIWGDGSTYKGNDIERFYRYGLLANPELKIYKPWLDQTFIdelggRTEMSQFLIDNGSDYKMSAEKAYSTDSNMLGAT 203
                      *******************************************************99************************************* PP

  Arginosuc_synth 180 ieagiLe..dpknappediyeltkdpakapdepeeveiefekGvPvaldgeelsv.lelieklneiagkhGvGRiDivedRlvglksReiYeap 270
                       ea  Le  d +++  e i  +     + + + e+v+++f++GvP al+ge+++  ++l+ k+nei+g+hG+G +D +e+R++  ksR+iYeap
       EGE25547.1 204 HEAKDLEflDASMHIVEPIMGVRFWDDSVRVATETVTVSFKEGVPTALNGEHFDSpVDLMLKANEIGGRHGLGMTDQIENRIIEAKSRGIYEAP 297
                      *******555555666666666555555566779******************9877************************************** PP

  Arginosuc_synth 271 aalvLikahkdlekltlerevakfkkiveekyaelvYkGlwfsPlkealdafiek.tqervtGtvrvklfkGs.vvvlgReseeslYdeelasy 362
                      +  +L  a++ l + + + +  +  +i   + ++l+Y+G wf+    +l++  ++   + +tG+v ++l +G+   +l  +s++  Y+++  s+
       EGE25547.1 298 GMALLHIAYERLLTGIHNEDTIEQYRINGLRLGRLLYQGRWFDSQALMLRETAQRwVAKAITGEVTLELRRGNdYSILNTKSPNLTYEADRLSM 391
                      **********9988888888888888999*********************9998735789************84679***************** PP

  Arginosuc_synth 363 deede 367
                      ++ ++
       EGE25547.1 392 EKVED 396
                      97554 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.9e-07    0.0062       4      62 ..      18      76 ..      15      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.9e-07
                EE--SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT--.-EEEEE-G CS
        QueC  4 vllSGGlDSttvlalakkegkevealtfdYgqrhkkeleaakkiakelgveehkildld 62
                + +SGGlD +++l+++k++g+  +a t + gq  + + +a  + ak++g ++ + +d +
  EGE25547.1 18 IAFSGGLDTSAALLWMKQKGALPYAYTANLGQPDEDDYNAIPTKAKQYGAVKARLVDCR 76
                569**********************************************9999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3225.92
//
Query:       EGE25548.1  [L=355]
Description: dihydroorotase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-17   64.2   0.1    1.7e-17   63.8   0.1    1.0  1  Amidohydro_1  Amidohydrolase family
    0.00017   21.4   0.0    0.00027   20.8   0.0    1.4  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.1   1.9e-21   1.7e-17       8     311 ..      13     323 ..       4     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 1.9e-21
                   EEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGS.GCCCSHHHHHHHHHH CS
  Amidohydro_1   8 DaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkvsldr.gsaetskasreklka 103
                   D+H+Hl++++ + +      +  + aa   +  ++ +l  ++ t+++++a    + e++l+a+++   +       ++ +r +s+++++ ++ +  +
    EGE25548.1  13 DWHIHLRDGEALAT------TVRHAAASFNRVICMPNLVPPVKTANQAIA----YRERILKALKDS--D-------LPATRkDSFDPRMVLYLTDQT 90 
                   9********99888......9999999999********************....***********5..3.......333446999999999999999 PP

                   HHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHH.....HHHHH.TTEEEEEE..TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEE CS
  Amidohydro_1 104 gaaetikgkadgvvk.valapheapafsdeelkealk.....eakkr.dlpvaiHa..letkgevedaeaafgetiehgthlevaeslglldeikli 191
                    a+++  +  +g+v+ v+l+p++a+++s++++ ++l      ea+++ ++p+ +H    +++ +++d+e+ f +++  + ++ ++         k++
    EGE25548.1  91 TAKDIDDAAQTGIVSaVKLYPAGATTNSADGVTDILArslvfEAMQKhGIPLLVHGeiTDSNIDIFDREKRFLDDVLNKIITQFPNL-------KIV 180
                   999999999*********************999999888999666555************************************988.......666 PP

                   EHCTCEEEHH..........HHHHHHHHHHHHCEE.........HHHHHHHHSEHHHHHHHHHHHH.TSCEEEEEECT........TSSCCGGHHHH CS
  Amidohydro_1 192 lahgvhltpt..........eaellkerlkeagva.........hcpfsnsilrsgrealrkalde.GvkvglgtDga........asgnslnllee 260
                   ++h+++ +++           a++++++l  +++           ++ + ++ + +  +l ++ ++ + k++lgtD+a        +s+ ++     
    EGE25548.1 181 MEHITTADAAdfclaqgnhiAATITPQHLLFNRNHllvggikphYYCLPILKRAAHQKRLLEVATSgNPKFFLGTDSAphathtkeSSCGCA----- 272
                   6666666633233333445555577777555555577999999889999*****************7888********9*999999777777..... PP

                   HHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB CS
  Amidohydro_1 261 lrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkd 311
                   + + ++ + +l++   e    l ++ ++a+ +gA+++gl+ ++  i+  k+
    EGE25548.1 273 GCYSALHALPLYAMAFESVNALDKLENFASRYGAQFYGLAINTTQITLIKQ 323
                   66666444444444334445555566*************999888877665 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     3e-08   0.00027     104     189 ..     104     184 ..      12     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3e-08
                   HHHHHTTECEEEEESSTTTCCTTTCGGHHHHHHHHHHHT-EEEEE....CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEESGG CS
  Amidohydro_2 104 raveelgfkGvrlnphvggddllgdrldrpifealeelglpvdihtGpspewlfggpqettraiqplllsgvarkfPnlkivlaHg 189
                    ++ +l   G   n++ g  d l + l    fea++++g+p+ +h  + +  +  +  ++   +++  l+ ++  fPnlkiv+ H 
    EGE25548.1 104 VSAVKLYPAGATTNSADGVTDILARSLV---FEAMQKHGIPLLVH--GEITDSNIDIFDREKRFLDDVLNKIITQFPNLKIVMEHI 184
                   3334555555666666667777776666...**************..4444444444445556999*******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2521.72
//
Query:       EGE25549.1  [L=232]
Description: ribonuclease T [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-33  116.6   0.1    1.9e-33  116.3   0.1    1.1  1  RNase_T   Exonuclease
    4.8e-08   33.2   0.0    7.2e-08   32.6   0.0    1.2  1  DUF5051   3' exoribonuclease, RNase T-like
  ------ inclusion threshold ------
      0.018   14.3   0.6        0.2   10.8   0.0    2.1  2  CAF1      CAF1 family ribonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.1   3.3e-37   1.9e-33       1     165 []      22     199 ..      22     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 3.3e-37
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCC...EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHH.HHTCEBHHH..HHHHHHHHHHHH........T CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggen...eigetfhfyvkptelakltdecteftgitqem.ldeapsfke..vleefkellrkl........a 85 
                 vviD+Et+g++a ++d+++eia++ i ++     + ge+ + +++p+++a+l++ +++ftgi+++  +++a s++e  +l+++++ l+ l         
  EGE25549.1  22 VVIDVETAGFNA-ATDALLEIACVPILMDNDgnlYQGEPLNAHIEPFDGANLEPAALKFTGINPDSpFRKAISEDEktALRRIFKALKALkkehscrqC 119
                 8***********.9************9999999**********************************99999999989**********88********* PP

                 CCCETTTCEEEESSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHC..HHHHHHHHHTTCHSSSS.TSSHHHHHHHHHHHH CS
     RNase_T  86 llvahnaafdvgflraadkrilkkevpkrnqfldtlildkatlkelar..tsldklaeklgleedgr.aHrAldDaeataklf 165
                 +lv+hna+fd+gfl+aa+ r   k   ++++f+ +  ld+ +++ l +  t+l+k +  +gle+d++ aH+Al+Da++ta+lf
  EGE25549.1 120 ILVGHNAHFDLGFLNAAIARTNSK---NHSPFHTFSVLDTVSFAALTYghTVLAKTCMIAGLEFDNQhAHSALYDAQKTAELF 199
                 ********************9444...7889999***********************************************98 PP

>> DUF5051  3' exoribonuclease, RNase T-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.2e-11   7.2e-08       3     164 ..      22     201 ..      21     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.2e-11
     DUF5051   3 lmiDiEtlgne.etaelvsIGaVff..petGeFyaeidlesdee.ag...idaetieWW.lkqskearaellkdtqeakslkdalqaleeFl....eks 89 
                 ++iD+Et+g + +t +l++I+ V +  +++G+ y+   l+++ e  +    + ++++    + ++  r+++ +d+  +  l+++ +al++       ++
  EGE25549.1  22 VVIDVETAGFNaATDALLEIACVPIlmDNDGNLYQGEPLNAHIEpFDganLEPAALKFTgINPDSPFRKAISEDE--KTALRRIFKALKALKkehsCRQ 118
                 58*******9989**********9999999988887777777442223557778888862456667777777666..8889999999999888855334 PP

     DUF5051  90 lkvwangasfDlviLraafel.....lipwkywndrdvrtlvala...pelekgeekkreipfe.gvkHnALaDAkhqakavsa 164
                   +++++a fDl  L+aa  +       p++ +   d  +  al      l k++ +   ++f+ + +H+AL+DA+  a+++  
  EGE25549.1 119 CILVGHNAHFDLGFLNAAIARtnsknHSPFHTFSVLDTVSFAALTyghTVLAKTC-MIAGLEFDnQHAHSALYDAQKTAELFCH 201
                 55****************999*999725666555555555555554336666665.666677777899********99998765 PP

>> CAF1  CAF1 family ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.4e-05       0.2     191     223 ..      96     135 ..      83     151 .. 0.80
   2 ?    1.8   0.2     0.019   1.1e+02     302     319 .]     182     199 ..     138     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.4e-05
                 HHSBTHHHHHHHH.......HC--EEEESSTHHHHHHHHH CS
                 xxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxx RF
        CAF1 191 kqsgfrlvfealv.......ksrkpiVgHNgllDllflyq 223
                 +++ +r++f+al         ++ ++VgHN  +Dl fl  
  EGE25549.1  96 EKTALRRIFKALKalkkehsCRQCILVGHNAHFDLGFLNA 135
                 44568888888886766666779*************9965 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.019
                 ------HHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
        CAF1 302 eesaHeAGyDafmTGlvf 319
                 +++aH A yDa  T+ +f
  EGE25549.1 182 NQHAHSALYDAQKTAELF 199
                 566************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1709.93
//
Query:       EGE25550.1  [L=162]
Description: putative nucleotide-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-57  193.2  10.7    3.3e-57  193.1  10.7    1.0  1  DUF520     Protein of unknown function (DUF520)
  ------ inclusion threshold ------
      0.011   15.4   3.4      0.016   14.9   0.6    2.0  2  YscJ_FliF  Secretory protein of YscJ/FliF family


Domain annotation for each model (and alignments):
>> DUF520  Protein of unknown function (DUF520)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.1  10.7   3.7e-61   3.3e-57       1     161 []       2     161 ..       2     161 .. 0.99

  Alignments for each domain:
  == domain 1  score: 193.1 bits;  conditional E-value: 3.7e-61
      DUF520   1 psfDivsevdlqevknAvdqakkeistRfDfkgskaeielkekekeitltaesefklkqvkdilksklvkrgvdlkaldlgkvekasgkkvkqevklke 99 
                 psfD+vse+++ evk+Av++++ke+++RfDfkgs+++i+l+ek+k++t+t+++e + ++v  i++++l+krgvdl++ld ++ +++sgk++kq ++lk+
  EGE25550.1   2 PSFDVVSELQVFEVKHAVQNTEKEVANRFDFKGSDISIQLNEKAKTVTITTDNELQSDNVYAIFEKQLIKRGVDLQSLDPQD-KSQSGKQTKQIIHLKD 99 
                 7********************************************************************************9.99************** PP

      DUF520 100 gidkekakkivklikdsklkvqasiqgdevRvtgkkrDdLQaviallkkedldlplqftNfr 161
                 g+d+++akki+k++k+s lkv asiqgd++R++ kk+D+LQ ++a+lk++++++plqf+Nf+
  EGE25550.1 100 GLDSDTAKKISKTLKESDLKVSASIQGDKIRISDKKKDNLQLAMAFLKEKTFGVPLQFNNFK 161
                 *************************************************************7 PP

>> YscJ_FliF  Secretory protein of YscJ/FliF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2      0.02   1.8e+02      45     166 ..      37      64 ..       7      97 .. 0.57
   2 ?   14.9   0.6   1.8e-06     0.016      20      71 ..      93     144 ..      85     152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.02
   YscJ_FliF  45 ipyklsddggtilVpedqvsearlklaseglpksgssvgfelfdkkssfgtTdfeeqvkyqralegeLartiesldgVesArVhlalPeksvfvreqke 143
                 i+ +l+++ +t+++  d           ++l                                                                    
  EGE25550.1  37 ISIQLNEKAKTVTITTD-----------NEL-------------------------------------------------------------------- 56 
                 34444444333333333...........322.................................................................... PP

   YscJ_FliF 144 psAsVvlklkpgrelseeqvkaI 166
                                ++++v aI
  EGE25550.1  57 ---------------QSDNVYAI 64 
                 ...............22222222 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.8e-06
   YscJ_FliF  20 eyevLysnlsekdaaeivekLdeegipyklsddggtilVpedqvsearlkla 71 
                 +   L  +l+++ a++i ++L+e++ ++  s +g +i +++++ ++++l++a
  EGE25550.1  93 QIIHLKDGLDSDTAKKISKTLKESDLKVSASIQGDKIRISDKKKDNLQLAMA 144
                 45578899****************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1385  (0.0772491); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1191.27
//
Query:       EGE25959.1  [L=117]
Description: hypothetical protein EA1_05848 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-16   60.2   0.6      3e-16   59.9   0.6    1.0  1  DDE_Tnp_IS1  IS1 transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.6   1.7e-20     3e-16      26     121 ..       7     102 ..       4     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 1.7e-20
  DDE_Tnp_IS1  26 aydrkrktvlayvfgertdetlrellallspfdvviltsddwglyerelkkdkhliskiytqriernnltlrtrlkrlarkslsfsksvelhekvi 121
                  a d+  k +l +v g+  ++t ++l   l   ++ ++ sd w +y + + k kh++sk  t  ie  n  +r+ ++r++rks ++sks ++ e  +
   EGE25959.1   7 AIDTNSKQILGFVCGKTDTNTFKRLYQQLNTHNIQLFFSDYWKSYRQVILKPKHITSKAQTFTIEGYNSLIRHFIARFTRKSKCYSKSEKMIENTL 102
                  78999***********************************************************************************88877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 945.72
//
Query:       EGE25960.1  [L=433]
Description: putative serine protease [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-31  107.8   3.6    1.7e-30  106.9   3.6    1.4  1  Trypsin_2      Trypsin-like peptidase domain
    3.5e-15   56.1   0.1      1e-14   54.6   0.1    1.9  1  PDZ_2          PDZ domain
    2.4e-13   50.4   0.3    4.2e-13   49.6   0.3    1.3  1  Trypsin        Trypsin
    1.3e-11   44.7   2.4      6e-11   42.5   0.2    2.5  2  PDZ            PDZ domain
    2.4e-10   40.1   0.3    1.5e-09   37.6   0.1    2.2  2  PDZ_6          PDZ domain
     0.0051   15.5   3.2       0.96    8.0   0.4    2.2  2  Peptidase_S46  Peptidase S46
     0.0072   15.6   2.0        1.7    7.7   0.6    2.3  2  Peptidase_S32  Equine arteritis virus serine endopeptidase S3


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   3.6   6.5e-34   1.7e-30       1     150 []     132     265 ..     132     265 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 6.5e-34
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggeks 99 
                 GsG++v+s+g+i+TnaHv+++ad+ +v         a +dgr+ +a+v+++d ++DlA++kv   e ++l p+ ++ + ++++g+   ++G+p g++  
  EGE25960.1 132 GSGVVVSSEGYIVTNAHVINGADEITV---------ALNDGRKARATVIGSDADSDLAVIKV---ELDNLVPMAFRAE-PIRVGDVSLAIGNPFGVGQ- 216
                 9**************************.........**************************...9999999999995.566776************9. PP

   Trypsin_2 100 gsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                  +v++Gi+s++ +  +    + e+f+qtdaa++pG+SGG+l+d++G ++G+
  EGE25960.1 217 -TVTQGIISATGR-TGIGVSSFEDFIQTDAAINPGNSGGALVDANGALIGI 265
                 .9***********.9***********************************8 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.1     4e-18     1e-14       2      81 ..     305     391 ..     304     392 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 4e-18
                 ...XX------.........-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE CS
       PDZ_2   2 ylGvsvsdeed.......tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevk 81 
                 ++G++++  +d        + v++  V +++Pa+ aglk+gD+i+ +dg+ ++s  +l + +++k p+++++++++Rd++  tv+v 
  EGE25960.1 305 WMGIEMVRMTDdptniesRSNVIIRRVWQNSPAEHAGLKSGDKIVRIDGVHITSINELVGVVARKAPDSQLTVEIMRDQRPMTVQVI 391
                 68888888777788999888999999**********************************************************996 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.3   1.6e-16   4.2e-13      28     215 ..     133     286 ..     119     292 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.6e-16
                 EEEEEETT.EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEEEEE CS
     Trypsin  28 gGslisen.wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttclvs 125
                 +G+++s++ +++T+aH++++a++++v         ++g + +++v          +++ d D+a++k++ +     +  p++ +a  +  p++ +++  
  EGE25960.1 133 SGVVVSSEgYIVTNAHVINGADEITV-------ALNDGRKARATVIG--------SDA-DSDLAVIKVELD-----NLVPMAFRA--E--PIRVGDVSL 206
                 577777777***********777766.......56677555555555........444.67*********9.....788888888..3..566669999 PP

                 ESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTS.EEEEEEGG CS
     Trypsin 126 GwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnr.pgvytkvs 215
                 ++g+++  g  +t++++ ++++ r  +  +      e++++++a     ++++G+SGG+lv  +g l+Gi+++ ++ + g   +g++++ +
  EGE25960.1 207 AIGNPFGVG--QTVTQGIISATGRTGIGVS----SFEDFIQTDA-----AINPGNSGGALVDANGALIGINTAIYSRSGGSMgIGFAIPNQ 286
                 *****9999..9999999999999743332....469*******.....*************************77777766688888766 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.16   4.1e+02      36      55 ..     187     210 ..     156     234 .. 0.73
   2 !   42.5   0.2   2.3e-14     6e-11       6      82 .]     300     380 ..     295     380 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.16
                 T...SHHHHHT.SSTTEEEEEETT CS
         PDZ  36 g...gaaeadg.lkvGDkIlsvNg 55 
                 +   ++a ++  ++vGD+ l++++
  EGE25960.1 187 DnlvPMAFRAEpIRVGDVSLAIGN 210
                 335577778888******999988 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 2.3e-14
                 TSTTSESSEEEEEETTSS....SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEEE CS
         PDZ   6 kegrgglGfslkggsdqr....gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLtil 82 
                 k +rg++G++ + ++d+        ++++ +v ++++ae +glk GDkI++++gv++++++++  v a k + +++t++i+
  EGE25960.1 300 KVSRGWMGIEMVRMTDDPtnieSRSNVIIRRVWQNSPAEHAGLKSGDKIVRIDGVHITSINELVGVVARKAPDSQLTVEIM 380
                 5589*************9***999************************************************99***9996 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.44   1.1e+03      11      24 ..     193     207 ..     191     210 .. 0.79
   2 !   37.6   0.1   5.7e-13   1.5e-09       2      56 .]     328     381 ..     327     381 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.44
       PDZ_6  11 AdrAG.lrvGDiils 24 
                 A rA  +rvGD+ l+
  EGE25960.1 193 AFRAEpIRVGDVSLA 207
                 789999*****8555 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 5.7e-13
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlvvrr 56 
                 ++ V  +sPA++AGl+ GD i+ ++G+++  +s+++++  ++  ++++++++++ r
  EGE25960.1 328 IRRVWQNSPAEHAGLKSGDKIVRIDGVHI--TSINELVGVVArKAPDSQLTVEIMR 381
                 5667789**********************..***********9********99976 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1   0.00042       1.1      49      69 ..     132     152 ..     122     156 .. 0.89
   2 !    8.0   0.4   0.00037      0.96     627     651 ..     242     266 ..     237     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00042
                    EE-EE-STT-EEEE-HHHHHH CS
  Peptidase_S46  49 CtasfVSpeGLvlTNHHCayg 69 
                     ++ +VS+eG ++TN H++ g
     EGE25960.1 132 GSGVVVSSEGYIVTNAHVING 152
                    79***************9865 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00037
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG ++++++g l+G++
     EGE25960.1 242 TDAAINPGNSGGALVDANGALIGIN 266
                    5677889****************97 PP

>> Peptidase_S32  Equine arteritis virus serine endopeptidase S32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0011       2.8     109     149 ..     127     166 ..      75     200 .. 0.82
   2 !    7.7   0.6   0.00068       1.7     206     234 ..     247     275 ..     221     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0011
                    ESSSEEEEEEEECTTEEEEEEEHHHH-.TSEEEEEETTEEEE CS
  Peptidase_S32 109 vGsslGsGgvftidgevvvvtashvlg.dnkarvsivgasqt 149
                     G+ lGsG v + +g   +vt +hv++ +++ +v  ++ ++ 
     EGE25960.1 127 QGVNLGSGVVVSSEG--YIVTNAHVINgADEITVALNDGRKA 166
                    5999******99887..689******9789999988776554 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00068
                    -GGGTT-EEEETTE.EEEEEEEEETTTEE CS
  Peptidase_S32 206 kcGDsGspvvdedgelvGvhtGsnkkGsg 234
                    ++G+sG ++vd +g l+G+ t   ++ +g
     EGE25960.1 247 NPGNSGGALVDANGALIGINTAIYSRSGG 275
                    79******************986555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3080.31
//
Query:       EGE25961.1  [L=37]
Description: N-acetyl-gamma-glutamyl-phosphate reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 282.87
//
Query:       EGE25962.1  [L=358]
Description: uroporphyrinogen decarboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-129  431.2   0.0   3.2e-129  431.0   0.0    1.0  1  URO-D     Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.0   0.0  1.8e-133  3.2e-129       2     346 .]       9     355 ..       8     355 .. 0.98

  Alignments for each domain:
  == domain 1  score: 431.0 bits;  conditional E-value: 1.8e-133
                 ---HHHHHHTT---SS--B--TT-SSTTSHHHHHHHT.SSSHHHHHH-HHHHHHHHHHHHHHH--S-EE-S--TTGGGGGGT-EEEEETTTEEEEE--S CS
       URO-D   2 knerllralrgekvdrvPvwlmRqaGrylpeyraera.gvsflelcknpelaaevtlqpvrrfglDaailfsdilveaealGlevefeegegPvvekpv 99 
                 kn+rllral+  +vd +Pvw+mRqaGrylpey ++ra +++fl lck+ ++a+evtlqp+rrf+lDaailfsdil++++a+ l++ f egegP+++k v
  EGE25962.1   9 KNDRLLRALKFLPVDTTPVWMMRQAGRYLPEYKQVRAqAGDFLSLCKDIDKATEVTLQPLRRFELDAAILFSDILTIPDAFDLGLYFAEGEGPKLTKTV 107
                 89************************************************************************************************* PP

                 -....GGGS----GGG.G..HHHHHHHHHHHHH.--SS-EEEEEE-HHHHHHHHHCTT.-SS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT CS
       URO-D 100 rtaedveklevpddveegrlpyvleaikllkkelggevpligfvgaPftlasylveGg.skgfekllkllykdpeevhklldkltdvvieylkaqieag 197
                 rt++++ +l++ d    + l+yv++a++ ++k+l+g+vpl+gf+g+P+tla+y+veGg s++f+++++++y+ pe++h+ll k+td+v++yl+aqi ag
  EGE25962.1 108 RTESQIMALPKIDMT--SSLDYVMKAVTSIRKALNGQVPLFGFSGSPWTLATYMVEGGsSREFRHTKHMMYATPELLHALLAKITDAVVDYLDAQIVAG 204
                 *********999874..58******************************************************************************** PP

                 -SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHH.H--S-EEEEESSHH.HHHHHHTTS--SEEE--TTS-HHHHHH....SS....EEE--B-G.G CS
       URO-D 198 AdaiqifDswagllspedfeefvlpylkrivdevkaegpkvpvilfikgagaeiledlaelgadvlsldwtvdlkeaar....evgdkvalqGnldPia 292
                 A+++qifDsw+g+l +++f ef++ y ++iv+++ka +p+vpvilf+kg g  +l+  a+++ad+l+ldwt++l ++ar    ++++k+a+qGnldP a
  EGE25962.1 205 AQIVQIFDSWGGVLGHRQFTEFSHAYNRKIVARLKAIHPDVPVILFTKGGG-LWLDVQADSQADALGLDWTMPL-DKARhllhALNAKKAIQGNLDP-A 300
                 **************************************************9.9*********************.77777**98889**********.9 PP

                 GGGS-HHHHHHHHHHHHT..T---SSSEEB-BSS---TTS-HHHHHHHHHHHHT- CS
       URO-D 293 lLlgspeeiekevkeile.kgaggkkgyilnlGhgippetppenvkalveavkey 346
                 +++gsp+ i+ ev+++l+ + +  k+gy++n+Ghgi++ ++p++ ka+++av++y
  EGE25962.1 301 TIFGSPKMIQMEVHRMLDdAYVLDKSGYVANFGHGITQWSNPDHAKAFIDAVHDY 355
                 ******************855778*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2583.97
//
Query:       EGE25963.1  [L=404]
Description: GTPase ObgE [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-57  192.8   6.7    4.2e-57  192.1   6.7    1.4  1  GTP1_OBG      GTP1/OBG
    4.9e-23   81.4   0.0    8.6e-23   80.6   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
    2.4e-09   36.9   0.0    1.6e-08   34.2   0.0    2.0  1  FeoB_N        Ferrous iron transport protein B
    0.00047   19.2   0.2       0.64    8.9   0.1    2.3  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
     0.0056   16.6   0.1      0.039   13.9   0.0    2.1  2  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
       0.02   14.4   0.0       0.13   11.7   0.0    2.0  1  Arf           ADP-ribosylation factor family
      0.027   14.5   0.0      0.045   13.8   0.0    1.4  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
      0.062   12.8   0.0       0.88    9.1   0.0    2.3  2  GTP_EFTU      Elongation factor Tu GTP binding domain
      0.071   12.7   0.0        0.5    9.9   0.0    2.1  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.079   12.7   0.0         14    5.4   0.0    2.2  2  ATP_bind_1    Conserved hypothetical ATP binding protein
       0.22   10.9   0.0       0.35   10.2   0.0    1.4  1  Gtr1_RagA     Gtr1/RagA G protein conserved region


Domain annotation for each model (and alignments):
>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.1   6.7   2.6e-60   4.2e-57       1     155 []       4     158 ..       4     158 .. 0.99

  Alignments for each domain:
  == domain 1  score: 192.1 bits;  conditional E-value: 2.6e-60
                 EEEEEEEEE----------BEEETTCCCEEB-S--------EEEEE-TT--SSGCCCTSSEEE-------BTTTB-------EEEEESTTEEEEETTTT CS
    GTP1_OBG   1 vdevkikvkaGkGGdGcvsfrrekyvpkggpdGGdGGkGGdvileadeklntlldlkykkkikAenGenGkgknksGkkgkdlvikvPvgtvvkdeetg 99 
                 +de+ i+vkaG+GG+G+vsfrrek+vpkggpdGGdGGkGGdv+  ad+++ntl+d++y++k++A++GenG +kn+sGk ++d+++ vP+gt++ d++ +
  EGE25963.1   4 IDEAVISVKAGDGGNGIVSFRREKFVPKGGPDGGDGGKGGDVYAIADDNTNTLVDYRYTRKFEAHRGENGGSKNRSGKGADDIYLAVPIGTTIIDTDLD 102
                 69************************************************************************************************* PP

                 EEEEEE-STT-EEEEE-----EE-GGGC-CSSCSS--EEEE-----EEEEEEEECS CS
    GTP1_OBG 100 evladltedgeevlvakGGkgGkGnaafksstnraprfaekGeegeereleLelkl 155
                  v+ dlte+g+++l+akGG+gG Gn++fksstn+apr+a++G  ge+r+++Lelk+
  EGE25963.1 103 VVIGDLTEKGQKILIAKGGDGGFGNTRFKSSTNQAPRKATPGFAGETRNIKLELKV 158
                 ******************************************************96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   5.3e-26   8.6e-23       1     114 []     161     284 ..     161     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 5.3e-26
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT........TTC CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseekglgkaflalee.adlillvvdas........eek 89 
                 +v+++G pN+GKSt+i++ + ++ +v+d+p+tT+ +n g v+++  ++++++D+pGliegas++ glg +fl++   +  +l++vd++          +
  EGE25963.1 161 DVGLIGLPNAGKSTFIRQVSAARPKVADYPFTTLVPNLGVVDVGShQSFVMADIPGLIEGASDGAGLGIRFLKHVArTRRLLHIVDVQpidesdpvA-N 258
                 599***************************************88779**************************88769********88887655531.2 PP

                 SHHHHHHHHHHHHH.TTSEEEEEEES CS
    MMR_HSR1  90 lkpldeeleellee.akkplilvlnk 114
                  + + +el+++ +e ++ p ilvlnk
  EGE25963.1 259 AQIILNELNKFSQElSQLPQILVLNK 284
                 34456777777766889999****98 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   9.8e-12   1.6e-08       3     155 ..     162     327 ..     160     328 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 9.8e-12
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT.EEEEEEE----SSSSSSSHHHHHHHHHHHC.TSSSEEEEEEEGGGHHHH..... CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg.keveivDlPGiYslsayseeekvardflle.eepdvvvnvvdatnlern..... 94 
                 v l+G pn+Gk+t++ +++ a+ kv+ +p +t   + g +++ + +++ + D+PG   ++  s    +  +fl +  ++  ++++vd + ++ +     
  EGE25963.1 162 VGLIGLPNAGKSTFIRQVSAARPKVADYPFTTLVPNLGVVDVGShQSFVMADIPGL--IEGASDGAGLGIRFLKHvARTRRLLHIVDVQPIDESdpvan 258
                 789**************************************977689999*****8..56777777777777774245666777777666654311111 PP

                 .HHHHHHHH....HT.TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS..-EEEEBTTTTBTHHHHHHH CS
      FeoB_N  95 .LyLtlqll....el.gvpvvlalnmideaekkgieidlkkLsekLgv..pvvktsakkkegieellka 155
                   +++ +l     el ++p +l+ln+id++ +++ +   + + ++Lg   +v  ts+ ++eg+e+++++
  EGE25963.1 259 aQIILNELNkfsqELsQLPQILVLNKIDQIPNEQRDAVCQDIITRLGWagEVFYTSTLTGEGVEAVKHH 327
                 12222233211113324799**************************96447*************99875 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00069       1.1      31      50 ..     161     180 ..     153     185 .. 0.89
   2 !    8.9   0.1    0.0004      0.64     165     233 ..     273     336 ..     236     370 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00069
                 EEEEEE-TTSSHHHHHHHHH CS
        MeaB  31 vvGltGvPGaGkstlvealg 50 
                  vGl G+P aGkst++ ++ 
  EGE25963.1 161 DVGLIGLPNAGKSTFIRQVS 180
                 59**************9876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0004
                 CHHH-SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHHH CS
        MeaB 165 ileiaDiivvnkaDkkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvdaieehrevlk 233
                 +  +  i+v+nk D+   e+     r a+  +  ++ +W  +v  ts+++geG++ + +++ +  e  +
  EGE25963.1 273 LSQLPQILVLNKIDQIPNEQ-----RDAVCQDIITRLGWAGEVFYTSTLTGEGVEAVKHHLMQVIEDER 336
                 44555667777766544443.....333444444789*****************998877766555444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.49     8e+02     104     120 ..     164     180 ..     147     188 .. 0.76
   2 !   13.9   0.0   2.4e-05     0.039      43      99 ..     272     330 ..     253     333 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.49
                  EECSTTSSHHHHHHHHC CS
  RsgA_GTPase 104 lvGqSGvGKStLinall 120
                  l+G   +GKSt+i ++ 
   EGE25963.1 164 LIGLPNAGKSTFIRQVS 180
                  7788889******9876 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.4e-05
                  HHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTT..SEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeeeeleelkeelealg..yevllvsaktkegleelkellkd 99 
                  e ++++ ++vlnKiD + +e++    ++ +++lg   ev+++s+ t+eg+e++k++l +
   EGE25963.1 272 ELSQLPQILVLNKIDQIPNEQRDAVCQDIITRLGwaGEVFYTSTLTGEGVEAVKHHLMQ 330
                  5578899*************954555555555552279****************99865 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.9e-05      0.13      19     173 ..     164     330 ..     149     332 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.9e-05
                 EEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEE.TTEEEEEEEE-SSGG.......GGGGGGGGCTTESEEEEEEETT...-CTTHHHHHHH CS
         Arf  19 llGLDnaGKtTilkklkleelvt...tvPTigfnveelei.knlkftvwDvGGqek.......lRplWknYfektdavifvvDsa...dreRleeakee 103
                 l+GL naGK+T + +++  + +       T+ +n   + +  + +f + D+ G  +       l   + +  ++t  ++++vD++   +++ +++a+  
  EGE25963.1 164 LIGLPNAGKSTFIRQVSAARPKVadyPFTTLVPNLGVVDVgSHQSFVMADIPGLIEgasdgagLGIRFLKHVARTRRLLHIVDVQpidESDPVANAQII 262
                 79***********9998876554323455899999999993456799999977533112222244456678899999******9733245678888888 PP

                 HHHHCT.SGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf 104 Lkalle.eeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlse 173
                 L++l + ++el++ + +++ NK+D     +++ + + + +++l      e++ +s+++geg++   + l++
  EGE25963.1 263 LNELNKfSQELSQLPQILVLNKIDQIPNEQRDAVCQDI-ITRLG--WAGEVFYTSTLTGEGVEAVKHHLMQ 330
                 999877467999************87766655554433.44454..5568999999999999887777766 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.8e-05     0.045      56     100 ..     276     328 ..     228     333 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
  MMR_HSR1_Xtn  56 ipclyvlNKiDlisleeldelare........pnsvviSaekelnldeLkeki 100
                   +p ++vlNKiD+i +e+ d+++++         +++ +S+ ++ +++++k+++
    EGE25963.1 276 LPQILVLNKIDQIPNEQRDAVCQDiitrlgwaGEVFYTSTLTGEGVEAVKHHL 328
                   799*******************9767778775588888998999888888766 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.14   2.2e+02       5      24 ..     161     180 ..     157     188 .. 0.80
   2 ?    9.1   0.0   0.00054      0.88     122     191 ..     275     331 ..     259     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.14
                 EEEEEESTTSSHHHHHHHHH CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLl 24 
                  +g+ig  ++GK+T++ ++ 
  EGE25963.1 161 DVGLIGLPNAGKSTFIRQVS 180
                 68999*********987765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00054
                 TTEEEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU 122 gvpiivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvel 191
                 ++p i+++NK+D++ +++ + + +++ ++l          g  g    +v+++S l+gegv+++   l++ 
  EGE25963.1 275 QLPQILVLNKIDQIpNEQRDAVCQDIITRL----------GWAG----EVFYTSTLTGEGVEAVKHHLMQV 331
                 6789**********8888888889999888..........4444....48888888888888665555554 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.4   6.6e+02       4      22 ..     163     181 ..     161     189 .. 0.80
   2 ?    9.9   0.0    0.0003       0.5     134     169 ..     268     304 ..     229     311 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.4
                 EEEESTTCCHHHHHHHHHC CS
        cobW   4 vltGflGsGKTtLlnhlle 22 
                 +l G + +GK+t+++++ +
  EGE25963.1 163 GLIGLPNAGKSTFIRQVSA 181
                 5778899*******99875 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0003
                 HHHHHH.HTSSEEEEE-HHHHCHC..HHHHHHHHHHH CS
        cobW 134 kaedql.aaadllvlnKtDlldeeallekleerlrql 169
                 k+ ++l +   +lvlnK+D++++e+  +++++++++l
  EGE25963.1 268 KFSQELsQLPQILVLNKIDQIPNEQRDAVCQDIITRL 304
                 333333145689************7779999988776 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0092        15       2      22 ..     165     185 ..     164     196 .. 0.88
   2 ?    5.4   0.0    0.0087        14      91     172 ..     207     291 ..     198     336 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0092
  ATP_bind_1   2 vGpaGsGKttfvgalseilel 22 
                 +G + +GK+tf++++s  +++
  EGE25963.1 165 IGLPNAGKSTFIRQVSAARPK 185
                 79999**********998775 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0087
  ATP_bind_1  91 ddyllfDtPGQielfthseslakiveeLes.efalvvvyLvDsqrltd..ptkfisgllsalsamlr..lelPhvvvlnkfDllkek 172
                 +++++ D+PG ie     + l   ++ L++   +   +++vD+q +++  p+   + +l  l+   +   +lP++ vlnk+D + ++
  EGE25963.1 207 QSFVMADIPGLIEGASDGAGLG--IRFLKHvARTRRLLHIVDVQPIDEsdPVANAQIILNELNKFSQelSQLPQILVLNKIDQIPNE 291
                 4677778888888776666655..55555544444556677777776655776666666666665553368***********97744 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00021      0.35      79     138 ..     240     302 ..     163     313 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
   Gtr1_RagA  79 vliyVfDvesreleedletlkeilealrqyspeakv...fvlihKmDliqedereeifeerke 138
                  l++++Dv+  + ++ +++ + il++l ++s+e++       ++K+D+i +++r+ + +++ +
  EGE25963.1 240 RLLHIVDVQPIDESDPVANAQIILNELNKFSQELSQlpqILVLNKIDQIPNEQRDAVCQDIIT 302
                 699******8889999999999999999999887632214557*************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3085.59
//
Query:       EGE25964.1  [L=166]
Description: GNAT family acetyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-12   47.9   0.0    2.7e-12   47.5   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    7.2e-09   35.9   0.0    9.8e-09   35.5   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    8.3e-05   22.9   0.0    0.00012   22.5   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    9.5e-05   22.3   0.0    0.00021   21.2   0.0    1.5  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0007   19.7   0.0      0.001   19.1   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
     0.0012   19.0   0.0      0.002   18.2   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   9.1e-16   2.7e-12      56     136 ..      64     145 ..      28     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 9.1e-16
  Acetyltransf_3  56 waivlkdtgv.iGsvglrdleeedee...aelgymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklG 136
                     + +   + g  +G++++r+  +e  +   +++gy  +p +wg+G+a+ +++ +l+++ ++ gl+++ +++d +N aS++v+e  G
      EGE25964.1  64 FGV--DELGLvLGVINVRYQLNEFLKvqgGHIGYSTHPNYWGQGIASQMLKLALTHC-QQNGLNQVLITCDDSNLASAKVIENHG 145
                     334..222344999999988777766999****************************.7777********************988 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   3.3e-12   9.8e-09      31     116 ..      59     145 ..      28     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 3.3e-12
                     TTCEEEEEEETTEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  31 eaegllvaeedgeliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklG 116
                      +++++ + e g ++G i ++ + +  +k + ++i ++  +p+y+g+G++s++l+ ++ ++ ++g++ + ++++++n a+ ++ e +G
      EGE25964.1  59 ADDTFFGVDELGLVLGVINVRYQLNefLKVQGGHI-GYSTHPNYWGQGIASQMLKLALTHCQQNGLNQVLITCDDSNLASAKVIENHG 145
                     33355555555778888866666667799999999.9*******************************77799999****99887665 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.9e-08   0.00012       4      52 ..      62     122 ..      51     156 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.9e-08
                     EEEEEEETTEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHH.....TTSE CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld.......aeitrlaVdpeyrgkGiGraLlea.....aekg 52 
                     ++f +++ g ++G i +  +        + +++  ++p+y g+Gi++++l++     +++g
      EGE25964.1  62 TFFGVDELGLVLGVINVRYQLneflkvqGGHIGYSTHPNYWGQGIASQMLKLalthcQQNG 122
                     45555555777787777666677776544444478****************6233221133 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   5.7e+03     112     126 ..      16      30 ..      13      31 .. 0.80
   2 !   21.2   0.0   6.9e-08   0.00021      31      96 ..      61     136 ..      49     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
  Acetyltransf_10 112 eqeenGirfvpMeke 126
                       +e+nG+ ++ M ++
       EGE25964.1  16 AFEDNGLVLHGMSLS 30 
                      688999999999876 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 6.9e-08
  Acetyltransf_10  31 alllvaeeggkivGviel.rdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.y 96 
                       ++++++e g ++Gvi++ ++ +        hi+    +p+y gqGi++++l+ ++++++++g+++  +t++ s+ +
       EGE25964.1  61 DTFFGVDELGLVLGVINVrYQLNeflkvqggHIG-YSTHPNYWGQGIASQMLKLALTHCQQNGLNQvLITCDDSNlA 136
                      5788888888889999885555577877766665.579*********************999999999999988844 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.5e-07     0.001      74     110 ..      90     126 ..      58     141 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.5e-07
                     EEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EE CS
  Acetyltransf_9  74 agvtgVavapehrgrgvlskLlaraleemreegqpls 110
                     +g  g +++p++ g+g++s++l+ al++++++g + +
      EGE25964.1  90 GGHIGYSTHPNYWGQGIASQMLKLALTHCQQNGLNQV 126
                     5566789*************************97655 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.6e-07     0.002      33      64 ..      98     130 ..      85     134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.6e-07
  Acetyltransf_CG  33 peelrGkGiAkkLvkaalddareegl.kvvptC 64 
                      ++ + G+GiA+++ k al + +++gl +v +tC
       EGE25964.1  98 HPNYWGQGIASQMLKLALTHCQQNGLnQVLITC 130
                      78999********************98899999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1238.44
//
Query:       EGE25965.1  [L=447]
Description: glyceraldehyde-3-phosphate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-43  146.2   0.3    1.4e-42  145.0   0.3    1.7  1  Gp_dh_C   Glyceraldehyde 3-phosphate dehydrogenase, C-termina
    1.8e-22   79.6   0.5    7.6e-22   77.6   0.0    2.4  3  Gp_dh_N   Glyceraldehyde 3-phosphate dehydrogenase, NAD bindi


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.3   1.6e-46   1.4e-42       1     158 []     270     428 ..     270     428 .. 0.93

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 1.6e-46
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS.- CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekev.t 98 
                 ++p++kvl+d++gi++g m t+ha tndQ+l+D  ++k  rr+raa  n++ tstgaa av++ +pelkgkl+g A+rVPtpnvs+  l +++ek+v  
  EGE25965.1 270 ITPTLKVLHDEYGIVHGHMETIHAFTNDQNLVD-NHHKADRRGRAAPLNMVMTSTGAASAVSKAIPELKGKLSGNAIRVPTPNVSLAILNLNFEKSVgD 367
                 689******************************.556999********************************************************735 PP

                 HHHHHHHHHHHHH.TTTTTTEEEEHSH.HHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C  99 veevnaalkeaae.galkgilsyteee.lvssDlvgdphssifdaketivveenlvkvvawy 158
                  + +n  ++  a+ ++ +  ++y++ +  vs+D+vg+++ +ifdak+ti+++ n+  ++ wy
  EGE25965.1 368 TKAINVFIQSKAQsEQWQAQIDYSDSPeAVSTDFVGSEKVAIFDAKATIATD-NRATLYVWY 428
                 78899999988887788888999887626**********************7.889999998 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   8.5e-26   7.6e-22       2     100 ..     106     216 ..     105     217 .. 0.89
   2 ?   -2.2   0.0      0.59   5.3e+03      45      68 ..     281     304 ..     258     326 .. 0.65
   3 ?   -3.2   0.0       1.2   1.1e+04      67      85 ..     368     386 ..     361     393 .. 0.72

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 8.5e-26
                 EEEEESTSHHHHHHHHHHH.....HHT.TCEEEEEE-T..S-HHHHHHHHHEETTTEC-SS-EEEE..TTEEEETTEEEEEE--SSGGGS-CHHHTSS. CS
     Gp_dh_N   2 kvainGfGRIGrlvlrall.....eek.elevvaindl..tdletlayllkyDsvhgrfkgeveae..eealvvngkkikvlaekdpeelpwkelgvd. 89 
                 +v+++GfGRIGr+++r l+     e+  +l+ + ++ +  +dl++ a+ll++Dsvhg f+g+v+++  ++ ++vng+ ikv+ ++dp+e+++++++++ 
  EGE25965.1 106 DVVLYGFGRIGRILARLLMsrpasESGlQLKAIVVRPAgeGDLAKRASLLERDSVHGWFNGSVQVDatNNGIIVNGRFIKVIYASDPSEVDYTAHDINd 204
                 699****************9998533346666777764459*********************999987889**************************99 PP

                 .EEEE-SSS--S CS
     Gp_dh_N  90 .lVvestGvftd 100
                  +V+++tG+++d
  EGE25965.1 205 aIVIDNTGKWKD 216
                 9********997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.59
                 EETTTEC-SS-EEEETTEEEETTE CS
     Gp_dh_N  45 yDsvhgrfkgeveaeeealvvngk 68 
                 y  vhg++++   +++++  v+++
  EGE25965.1 281 YGIVHGHMETIHAFTNDQNLVDNH 304
                 555677776666666555444443 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.2
                 TEEEEEE--SSGGGS-CHH CS
     Gp_dh_N  67 gkkikvlaekdpeelpwke 85 
                  k i+v+ +++ ++ +w++
  EGE25965.1 368 TKAINVFIQSKAQSEQWQA 386
                 4678888888888888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3156.18
//
Query:       EGE25966.1  [L=346]
Description: NUDIX hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-17   63.0   0.0    4.5e-17   62.3   0.0    1.3  1  NUDIX     NUDIX domain
    2.3e-11   43.4   0.0    3.6e-11   42.7   0.0    1.3  1  TMP-TENI  Thiamine monophosphate synthase
    1.8e-09   37.6   0.1      3e-09   36.8   0.1    1.3  1  NUDIX_4   NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   7.5e-21   4.5e-17       4     130 ..      14     143 ..      10     144 .. 0.79

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 7.5e-21
                 EEEEEEEEETTSEEEEEEES.SSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHS..EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGCSS CS
       NUDIX   4 ravgvvllnekgevLlvrrs.kkpfpg.WelPgGkvepgEtpeeAArREleEEtG..leaellellgrlhylapydgpygdeheilyvfleevegelep 98 
                 +av+v+ + +k  +L+++r+  ++  g We++gGk++++E++++A++RE++EE+G  l+ ++l ++g     + y+++++ ++ +ly+++  ++ ++ +
  EGE25966.1  14 VAVAVLRYTDK--FLVAKRHmHQHQGGkWEFIGGKIDANESAKQALMREVNEEIGlsLNTDQLVFMG-----KVYHDYQD-KKVYLYTYEVYLTKKQYH 104
                 45666666666..*******76666669***************************554668899999.....45666555.899999999777777777 PP

                 T.....STTTEEEEEEEEHHHH..HHHHTHCTHHHHHHH CS
       NUDIX  99 n.....denevsevrwvpleel..lkeklaaesrkllpw 130
                 +     +  e +++rw++++e+  +  ++  +++++++w
  EGE25966.1 105 DflycqKGLENQALRWLDMDEMiaKVNQFPVANARIMDW 143
                 77888888899999********76666666666666665 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0     6e-15   3.6e-11     101     180 ..     253     336 ..     229     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 6e-15
    TMP-TENI 101 lSvhsleeaeeaealga....dYigvGpifpTdtKkdaeplgleglkelaealeiPvvaiGGitlenvaevleagadgvavvsa 180
                 + vh+++ea+ a++l+         ++p+++T+t+++a++lg++g++ la+ + +P +a+GG+t  +++ + ++ga+g+a +++
  EGE25966.1 253 VGVHDKKEAMMANQLAKshriVAALISPVHKTKTHPKAHALGWQGFESLAKLCDMPSMALGGMTYFDMNCAKNHGAKGIAGIRG 336
                 67788888666664444211266789******************************************************9997 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   5.1e-13     3e-09       1     108 [.      15     141 ..      15     143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 5.1e-13
                 EEEEEEECTEEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS-EEE..EEEE.EEEEEEETTEEEEEEEEEE...........EEE.S. CS
     NUDIX_4   1 avllirddgrvllekRpekgllggLwefPgge.eegeeleeala...reelgieve..elep.gtvkHvftHfrltltvylv...........rveege 81 
                 av+++r  +++l+ kR  +++ gg wef gg+  ++e++++al+   +ee+g++ +  +l   g+v H + + ++ l+ y+v            +++g 
  EGE25966.1  15 AVAVLRYTDKFLVAKRHMHQHQGGKWEFIGGKiDANESAKQALMrevNEEIGLSLNtdQLVFmGKVYHDYQDKKVYLYTYEVyltkkqyhdflYCQKG- 112
                 68899999************************65566688898767788999844433443378999*************997777777776644422. PP

                 .---EEEEEEGGGG..GGS---CCCHCCH CS
     NUDIX_4  82 eapaelrwvtpeel..eeyalptavrkll 108
                  ++++lrw++ +e+  +   +p a+ +++
  EGE25966.1 113 LENQALRWLDMDEMiaKVNQFPVANARIM 141
                 333499***99886423467888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2474.66
//
Query:       EGE25967.1  [L=55]
Description: hypothetical protein EA1_05888 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-17   62.0   0.9    4.1e-17   61.7   0.9    1.1  1  hemP             Hemin uptake protein hemP
  ------ inclusion threshold ------
      0.081   13.2   0.1      0.081   13.2   0.1    1.1  1  Pep_M12B_propep  Reprolysin family propeptide


Domain annotation for each model (and alignments):
>> hemP  Hemin uptake protein hemP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.9   4.6e-21   4.1e-17       2      37 .]      20      55 .]      19      55 .] 0.96

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 4.6e-21
                EEHHHHTTSSSEEEEEETTEEEEEEE-TTS-EEEE- CS
        hemP  2 idSreLlgggrevlIeHgGetYrLRiTrngKLILTK 37
                + S+ L++  +ev+IeH+Ge+YrLR+Trn++LILTK
  EGE25967.1 20 LYSQNLFAMTKEVRIEHQGEEYRLRLTRNNRLILTK 55
                569********************************9 PP

>> Pep_M12B_propep  Reprolysin family propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     9e-06     0.081      36      60 ..      28      52 ..       3      55 .] 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9e-06
  Pep_M12B_propep 36 erlsyrlkafgkefhLnLepnsell 60
                      + + r++++g+e++L+L++n++l+
       EGE25967.1 28 MTKEVRIEHQGEEYRLRLTRNNRLI 52
                     566789*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 414.47
//
Query:       EGE25968.1  [L=1672]
Description: hypothetical protein EA1_05893 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-40  137.0   3.3    9.7e-40  137.0   3.3    5.5  6  TamB      TamB, inner membrane protein subunit of TAM complex


Domain annotation for each model (and alignments):
>> TamB  TamB, inner membrane protein subunit of TAM complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.14   2.5e+03     282     313 ..     277     309 ..     261     339 .. 0.67
   2 !    4.4   0.0   0.00099        18       4      40 ..     360     393 ..     357     426 .. 0.81
   3 ?   -1.5   0.0     0.062   1.1e+03      11      38 ..     538     566 ..     490     649 .. 0.78
   4 ?   -0.4   0.1     0.029   5.2e+02       8      58 ..     682     733 ..     675     756 .. 0.78
   5 ?    0.2   1.1     0.019   3.4e+02       7     159 ..     780     931 ..     775     978 .. 0.52
   6 !  137.0   3.3   5.4e-44   9.7e-40       8     383 .]    1324    1672 .]    1315    1672 .] 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.14
        TamB 282 glsllsgqlnk..lssalgldnlsldsatsstgg 313
                 g+++++g+ ++  +s++l++d+++l  +++s++ 
  EGE25968.1 277 GSFIAQGLDKNspFSARLDFDEVRL-PYADSQNI 309
                 5667777775568999999999999.44445543 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.00099
        TamB   4 tardangGtltlnGsisleslkdieldLtlslknllv 40 
                 +a d+ +Gtl+++G++++e  + +eld t+++++ ++
  EGE25968.1 360 QA-DTANGTLVATGDMTWE--DGYELDATITADGYRI 393
                 45.5799***********9..8888888888887665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.062
        TamB  11 GtltlnGsisl.eslkdieldLtlslknl 38 
                 G+lt +G++++  ++++ e+ L+++++ +
  EGE25968.1 538 GELTGTGRVDFaTAQRPLEWQLDVTANPV 566
                 78888888888766677778888887753 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.029
        TamB   8 angGtltlnGsisleslkdieldLtlslknllvlntkdadgt.vsgdltlkg 58 
                 ++ G+++l G++ l++  ++ +  +l+  +  ++  +d   + ++gdl   g
  EGE25968.1 682 NDSGKVSLAGRLGLNDGIHWQIQGRLDEVDTAAFVDDDNLVAiITGDLATSG 733
                 678************9999988888877666666666666663599988777 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.019
        TamB   7 dangGtltlnGsisleslkdieldLtlslknllvlntkda.dgtvsgdltlkgsldqpvlsgeltissatitlyeapaseaaserskdvvfvnpeetee 104
                 d+ +Gtl ++G +++   +  ++ L+++ + l++ +  +  d +++g+++l g+ ++      ++is+ +it    +++  a+  s + ++  p+ + +
  EGE25968.1 780 DGTAGTLNATGWVDIS--QGAAWQLEADMNSLNLGAFIQSlDTDLNGTIQLAGNWQES--HQVIDISNLDITGSYNNQPLIATG-SLYAKLSLPK-DLA 872
                 6788999999999997..5566666666666665443333045588888888876432..222455555555555555555444.3244444444.122 PP

        TamB 105 keas.agtaeksaeptgldlelalfvdlklelgpdvrv..dgegleaeleG.dLtvngt 159
                 +  +  + a+++ + ++++l+l+ ++d +++  ++++   + ++l++++++  L ++g+
  EGE25968.1 873 GYIQsIKQASRPPTSSDDLLALKNRIDNNARQTQNIVHklNADNLQVRIGNnHLAISGD 931
                 22222222333334444444444444444444444444444444555555545555555 PP

  == domain 6  score: 137.0 bits;  conditional E-value: 5.4e-44
        TamB    8 angGtltlnGsisleslkdieldLtlslknllvlntkdadgtvsgdltlkg..sldqpvlsgeltissatitlyeapaseaaserskdvvfvnpeet 102 
                  +++G+++l G ++++  ++   +L + ++nl+v++++ +++++s++l +      + ++++g + i+sati  +ea+a+ ++++   dv +++++  
  EGE25968.1 1324 GGEGHGVLYGEMDWA--EELYARLGVFGENLTVSQPPLVTAQISPELEVIIrpFQKFVDVQGVVSIPSATIRPPEATADIVTES--PDVSVIDRR-- 1414
                  789***********6..88999************************8888743558**********************999887..499999999.. PP

        TamB  103 eekeasagtaeksaeptgldlelalfvdlklelgpdvrvdgegleaeleGdLtvngtangrlslfGsirltr.GtynlfgkeFelegGeitfagdpp 198 
                    ++ +       + +   + ++++++++ ++lg+++ ++g g+   l+G + ++ + +g ++  G++++++  +++ +g++++l   +i+f+gd +
  EGE25968.1 1415 --ITGN------IDQILSRAKPWDINANIGVDLGNEIEFRGFGAVLPLAGAIHLTQSGQGAMQALGVVQVSKrTKIDVIGQNLDLNYAQIRFDGDML 1503
                  ..2222......2223344457889**********************************************6488*******************999 PP

        TamB  199 ldptLditaiyrvnasssqtnerdpvrvllnvtGtlskPqvslssePnlsekeilslLllgr..slsdls......sgqlgaaaasllgsaglslls 287 
                   +p+L i++++++          +  +v+++++Gt+s+P+++ +++  l e +++  L++gr  ++sdl+       +q +  +a+++ s+gls   
  EGE25968.1 1504 -NPRLSIEGEKQI----------EGQTVGVRIRGTASNPNITVFNDAGLDEYQAMNALVTGRisESSDLGiteqgfRSQVTNHLAAAGLSLGLSGTR 1589
                  .************..........668************************************87666666888888888888888888899999999 PP

        TamB  288 gqlnklssalgldnlsldsatsstggdaqdrtglvvevgkylndrlyvsvgsavglggssegdvsieyrltpnlslraklfngnngqvdLsykkrF 383 
                  ++ n+++ a+g++ l +d+++ss        ++++v+v  y++++ly+++g  vg+++ +  + s +y+lt++++++a +  +  + vd++y+++F
  EGE25968.1 1590 DLTNQIGHAFGFQSLTIDASGSS--------DDTNVNVTGYITPDLYLRYG--VGVFNAES-TLSMRYQLTRRVYIEATSAAE--NMVDVIYRWKF 1672
                  999**************999954........89******************..******99.******************665..33*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.34s 00:00:01.32 Elapsed: 00:00:00.50
# Mc/sec: 10133.80
//
Query:       EGE25969.1  [L=919]
Description: D15 surface antigen family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-29  102.5   2.8    4.4e-29  102.0   2.8    1.2  1  Bac_surface_Ag  Surface antigen
    4.7e-06   27.1   0.2      0.037   14.6   0.0    2.8  2  POTRA           Surface antigen variable number repeat
  ------ inclusion threshold ------
      0.012   15.7   0.0       0.04   14.0   0.0    1.9  1  POTRA_TamA_1    POTRA domain TamA domain 1


Domain annotation for each model (and alignments):
>> Bac_surface_Ag  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   2.8   7.4e-33   4.4e-29       6     324 .]     612     919 .]     608     919 .] 0.81

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 7.4e-33
                     S-EEEEEEEESSSEEEEEEEEEES..TSSTTS-E..EEEEEEEEEGGGTBS.S-EEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEES---BHHH CS
  Bac_surface_Ag   6 GqslslsaslgsyeqslnlsfteP..yflgdrvs..lglslfaresdsdesdsyrtksvgfsvslgrpltenyslslglsvqknkilkdsssenn 96 
                     G+++++++ l+++++ ++l  t+P  + l+d+++  lg++ + +  +++ + +++t ++  ++s ++ ++  ++ ++ l+++ +k++++ ++e  
      EGE25969.1 612 GYQAGAELRLSEDKKGVKLYATKPlsHPLNDQLRatLGYQQEVFGHSTNGF-DLSTRTLEHEISRSIIQNGGWNRTYSLRYRLDKLKTQAPPE-T 704
                     999*********************886666655400444444442444444.66666666666666668888888888888888877776666.5 PP

                     HHHHHS.CS--EEEEEEEEEEEEEEEEEESSSSS-SSEEEEEEEEEEE-..TTSSS-EEEEEEEEEEEEESST.....TSSSEEEEEEEEEEEEE CS
  Bac_surface_Ag  97 rnvssa.sklqtgksltsslslslsydtrddalfPtrGvllklrleftgpllggdvsylkldakasyyvpltk.....ekdlvlaarvalgyisg 185
                     +++  +   +++  ++    ++ +     d+ ++P rG++++ +le++   l +d ++   +a +s  +++++     ++  ++   +++gyi +
      EGE25969.1 705 WQDLPVdFVNGKPSQEALLAGVAVHKTVADNLVNPMRGYRQRYSLEVGSSGLVSDANMAIARAGISGVYSFGDnaygsNRAHQMTGGIQVGYIWS 799
                     555545466777777777778888888899999****************99*********************86555445555566666666665 PP

                     SSSS-.--GGG-B-BSSTTSSTEE-TT-BS-EEEEEEE--BSEEEEEEEEEEEE-SSS-GGTTEEEEEEEEEEEEE-TT--TTTTTTS--TTTS- CS
  Bac_surface_Ag 186 ygtkdelpfyerFyaGGsnsvRGfesgglgprdesgdalGGdsyavaslElrfplpflkkqnsvrlalFfDaGnvwdkegqspsssrsasstaei 280
                      + +  +p   rF+aGG +s+RG+++ +l p +++g   GG+ +av+++E+ + + +      +rla+F D+Gn +dk  ++++           
      EGE25969.1 800 DNFNH-VPYRLRFFAGGDQSIRGYAHDSLSPISDKGYLTGGQVLAVGTAEYNYEFMK-----DLRLAVFGDIGNAYDKGFTNDT----------- 877
                     55666.************************************************955.....4**************9988887........... PP

                     EEEEEEEEEEEETTEEEEEEEEEEEE-STT--EESEEEEECEEE CS
  Bac_surface_Ag 281 rasvGvgLrwqsPlGPlrfdyAiplkkedgdktqrFqFgiGttF 324
                     ++++Gvg+rw+sP+G  r+d+A  +k+e +    +++F iGt F
      EGE25969.1 878 KIGAGVGVRWASPVGQVRVDVATGVKEEGN--PIKLHFFIGTPF 919
                     89*********************9999988..447888888866 PP

>> POTRA  Surface antigen variable number repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.2e-06     0.037      19      74 ..     295     352 ..     277     355 .. 0.78
   2 !    9.4   0.1   0.00026       1.6      15      64 ..     386     436 ..     375     443 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.2e-06
                 HHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EE...EEEE..HSSTTSEEEEEEE CS
       POTRA  19 lrrelelkegdvynpekleadkealksryanlGyfdasV...qvel..peddedknrvdlt 74 
                 + +e++l  gdv+   k+e+ k+ ++++ a++Gyfd +    +v+   p ++ d++   l+
  EGE25969.1 295 VADEVPLLIGDVFHHGKYETKKNLIENASAEHGYFDGRWldrSVDVilPDNTADVS---LI 352
                 678889999***************************99888766665555555555...55 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00026
                 -HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEE......HSS CS
       POTRA  15 kdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvel......ped 64 
                 k e l+++l ++ g+ yn + ++a  +    ++ ++ yf+  V++e+      +++
  EGE25969.1 386 KRELLEQLLTVNMGEAYNLQAVRALSN----DLIATRYFN-MVNTEIvfpereQIQ 436
                 7788999999********999999999....*********.9*8888775443333 PP

>> POTRA_TamA_1  POTRA domain TamA domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.8e-06      0.04      11      59 ..     208     253 ..     202     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.8e-06
  POTRA_TamA_1  11 leeNvrayLsliseeesesserlerllrraeeeirkALralGYYqptie 59 
                     +N++a+L+ i++e + +++       r+++ +  A+ra+GYY+   +
    EGE25969.1 208 PYANIKAALEDITQESAMDLN---GSIPRLRQTALVAARAVGYYDIDLS 253
                   568******************...889999999999********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6353.17
//
Query:       EGE25970.1  [L=443]
Description: major facilitator superfamily protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-18   66.6  56.4    9.3e-18   64.3  38.8    2.0  2  MFS_1     Major Facilitator Superfamily
    4.1e-06   25.5  13.1    4.1e-06   25.5  13.1    1.4  1  MFS_3     Transmembrane secretion effector
  ------ inclusion threshold ------
      0.062   13.1   1.8       0.13   12.0   0.0    2.5  3  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit
       0.59    9.8  11.4        1.4    8.6   0.5    3.5  3  SLATT_4   SMODS and SLOG-associating 2TM effector domain fami


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3  38.8   2.1e-21   9.3e-18       2     352 ..      17     388 ..      16     389 .. 0.76
   2 !   16.3   9.6   8.1e-07    0.0036      86     175 ..     337     426 ..     330     439 .. 0.84

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 2.1e-21
       MFS_1   2 llaaflsalarsi....lgpalplalaedlgispseigllltl.yalgaavaslplGrlsdrfGrrrvlllglllfalg.lllll..fasslw.lllvl 91 
                 ++++f+ a++ +i    l+++l+   a  l   +s ++ l++l + l ++++s ++G ++d++  +++l   + l+ +  +++++  f+  ++ ll+++
  EGE25970.1  17 FFTQFFGAFNDNIfkqaLILVLTYSAAAKLETEVSLLNNLAALlFILPYFLFSALAGQIADKY-EKSTLTGHIKLLEIIiMAVAAvgFIYEIYsLLFFC 114
                 77888888888885554555555555677777777777666665888****************.666665554444333233333344588888***** PP

       MFS_1  92 rvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                  +++G  + ++ p+ +a++ +   ++e   a+gl+++++sl+++ g++ +g+l+++  + + ++++++  ++a++    +l +++ ++ ++   +++  
  EGE25970.1 115 LFMMGTQSTFFGPIKYAYLPETMRHDELVAANGLFQTSTSLAILTGMMTAGILTQL--YFSEYWLATVTIVVAIL---GYLSARQIPKTKVHAPDLSin 208
                 ******************************************************44..33567777777777755...555555555444433333353 PP

       MFS_1 189 kgtgpaplvpawkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallll 284
                    +++++   +k+l + p    l+++ l++++++++   +lt +p  ++  l+ +    + +ll+l+++++ai++ll+  l +   + r l  +ll+l
  EGE25970.1 209 WNIAGTSFEL-LKYLYHLPL---LFFITLGNSWFWFYgatFLTQTPEVTKVLLHAD-ESVVIFLLSLFSVGIAIGSLLCKTLTKNQVSFRLLPYGLLGL 302
                 4456666666.999999994...555555555555555788888999999999**9.6777778*******************8888899999999999 PP

       MFS_1 285 llaalglallavtssavllll..................vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +++a++l++  +  s +l ++                  +l+l+Gf +g++ ++l ++++ +ap +++ +++g++n+++++ ++++
  EGE25970.1 303 SVFAMALYFSLNQLSLALPIWpyavmdiihqlhawpvfiALFLLGFSGGVYIVPLYTAMQAYAPIDYRSRIVGANNILNAIFMVIS 388
                 9999999999999444444444456666666666666669999*************************************999886 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 8.1e-07
       MFS_1  86 wlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav..fyilaivsllafvlfllllpee 175
                 w+++++ +l G+ +g+++   ++++ +++p + r+r +g  ++ +++ +++ ++++ ++++ +  +++  f i ai+ ++++++  l l  +
  EGE25970.1 337 WPVFIALFLLGFSGGVYIVPLYTAMQAYAPIDYRSRIVGANNILNAIFMVISAIFSIIILAVIKLSLAqlFAITAILNAIFGLF--LCLKLK 426
                 7799*****************************************************999888755555599999999999996..554444 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5  13.1   9.2e-10   4.1e-06       2     308 ..       3     316 ..       2     344 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 9.2e-10
       MFS_3   2 safaPlrqkvFrviWiaslvsnlGtliqevaasWlmtdisasp..lmvAlvqaaat....LPifllsilaGalaDnfdrRkvllavqlllalvsvlltv 94 
                 s +  +r++vF +++ ++ ++ +   i + a   ++t  +a++  + v l+   a+    LP fl+s laG +aD++++  +   ++ll ++  ++++v
  EGE25970.1   3 SQLNLFRRQVFTSMFFTQFFGAFNDNIFKQALILVLTYSAAAKleTEVSLLNNLAAllfiLPYFLFSALAGQIADKYEKSTLTGHIKLLEIIIMAVAAV 101
                 5667799999999999999999999998888888888777765115799988766533336*****************988776666666554444444 PP

       MFS_3  95 laalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGa..alafavnalsylalivallrwkr 191
                   ++++   +ll    +++g  +++  P   A ++e ++++++ aA  L      +a   G   +G+l  +  +  +la    +++ l  + a    k 
  EGE25970.1 102 GFIYEIY--SLLFFCLFMMGTQSTFFGPIKYAYLPETMRHDELVAANGLFQTSTSLAILTGMMTAGILTQLYFSeyWLATVTIVVAILGYLSARQIPKT 198
                 4444443..35555678899999*******************************************998765320022222223333444444444444 PP

       MFS_3 192 evrksslp.rEkllealraglRftaasreikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvll 289
                 +v++ +l  + ++ ++  + l++    + +  + +    F +  ++ l+  P v +  l++d +v   ll+ + vG  +g+ll ++L +   s rl+ +
  EGE25970.1 199 KVHAPDLSiNWNIAGTSFELLKYLYHLPLLFFITLGNSWFWFYGATFLTQTPEVTKVLLHADESVVIFLLSLFSVGIAIGSLLCKTLTKNQVSFRLLPY 297
                 5544444313466666677789988888888888889999999999*****************************************999999998888 PP

       MFS_3 290 aavalAlvllslalasslw 308
                   ++l + +++l ++ ++ 
  EGE25970.1 298 GLLGLSVFAMALYFSLNQL 316
                 8777777766666554443 PP

>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.5       2.3     1e+04       4      11 ..     106     113 ..      94     120 .. 0.56
   2 ?   12.0   0.0     3e-05      0.13       6      34 ..     225     253 ..     224     254 .. 0.96
   3 ?   -3.4   0.0         2     9e+03      15      33 ..     272     290 ..     266     292 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.3
        B12D   4 eliPLfvf 11 
                 e++ L++f
  EGE25970.1 106 EIYSLLFF 113
                 44444444 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3e-05
        B12D   6 iPLfvfigagvggavfylvRllltnPDVr 34 
                  PL++fi++g ++  fy++  l++ P+V+
  EGE25970.1 225 LPLLFFITLGNSWFWFYGATFLTQTPEVT 253
                 5**************************95 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2
        B12D  15 gvggavfylvRllltnPDV 33 
                  vg+a+ +l++  lt+  V
  EGE25970.1 272 SVGIAIGSLLCKTLTKNQV 290
                 5788888888888877665 PP

>> SLATT_4  SMODS and SLOG-associating 2TM effector domain family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2    0.0068        31      30      54 ..      85     109 ..      73     124 .. 0.78
   2 ?    8.6   0.5   0.00031       1.4      10      69 ..     126     187 ..     119     198 .. 0.77
   3 ?    2.4   1.0     0.023     1e+02      29      81 ..     376     429 ..     369     439 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0068
     SLATT_4  30 ekrikllqIilsaittggllvllfg 54 
                    ikll+Ii+ a+ + g++  +++
  EGE25970.1  85 TGHIKLLEIIIMAVAAVGFIYEIYS 109
                 4579****************99976 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00031
     SLATT_4  10 grvvYthkthekqadilskrekrik..llqIilsaittggllvllfgdekvakivgailsli 69 
                 g + Y++    +  d l + +  ++  +   il++++t+g+l++l+ +e +++ v+++++++
  EGE25970.1 126 GPIKYAYLPETMRHDELVAANGLFQtsTSLAILTGMMTAGILTQLYFSEYWLATVTIVVAIL 187
                 55666666666666666666665551145689**************************9987 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.023
     SLATT_4  29 rekrikllqIilsaittggllvllfg.dekvakivgailslillvlnlytkdfd 81 
                  ++++  + +++sai +  +l+++     ++ +i +++ ++  l+l l +k++d
  EGE25970.1 376 ANNILNAIFMVISAIFSIIILAVIKLsLAQLFAITAILNAIFGLFLCLKLKKYD 429
                 677888888999999999999999773455555555555666778888788777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3192.07
//
Query:       EGE25971.1  [L=274]
Description: hypothetical protein EA1_05908 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-05   23.3   1.2      0.011   16.2   0.0    2.3  2  TPR_19    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.023   14.8   0.0       0.16   12.1   0.0    2.0  1  TPR_9     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.3e-06     0.011      10      51 ..     163     204 ..     160     215 .. 0.91
   2 !    5.9   0.6    0.0021        19      23      62 ..     208     247 ..     204     250 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-06
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 A  ++++alq +p+++ea ll  + l ++g ++e ++ Ld++
  EGE25971.1 163 AGTYMQKALQLKPNDLEANLLFGIMLSESGGFKEGRKYLDKA 204
                 556899*********************************987 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0021
      TPR_19  23 knaearllLAeallalgqldeAealLdalpeedpddarya 62 
                 +n ea    A+a l + + ++A + L +l ++ p++a++a
  EGE25971.1 208 GNVEAEQSIAQADLLNDNRTAALKRLRTLANKHPNHAQIA 247
                 56677777899999999999999******99999999876 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.8e-05      0.16      13      59 ..     162     208 ..     159     253 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
       TPR_9  13 ralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylala 59 
                 ra  + +  l+l+P+d e  +  G++l ++G ++++++ L+ ++++ 
  EGE25971.1 162 RAGTYMQKALQLKPNDLEANLLFGIMLSESGGFKEGRKYLDKAVSMG 208
                 666788889*********************************99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2046.25
//
Query:       EGE25972.1  [L=771]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-05   22.4   0.1    0.00023   21.0   0.1    1.7  1  PGAP1          PGAP1-like protein
    0.00015   22.4   0.0    0.00031   21.4   0.0    1.6  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0014   18.2   0.1     0.0044   16.6   0.1    1.9  1  DUF676         Putative serine esterase (DUF676)
     0.0018   18.1   0.0       0.24   11.2   0.0    2.3  2  Abhydrolase_2  Phospholipase/Carboxylesterase
  ------ inclusion threshold ------
      0.038   13.3   0.0       0.17   11.1   0.0    2.1  3  Hydrolase_4    Serine aminopeptidase, S33
      0.049   13.3   0.2       0.51    9.9   0.2    2.2  1  Abhydrolase_1  alpha/beta hydrolase fold
      0.069   13.0   0.0       0.23   11.2   0.0    2.0  1  Palm_thioest   Palmitoyl protein thioesterase
      0.078   13.3   0.6         10    6.5   0.0    3.8  4  DUF3932        Protein of unknown function (DUF3932)


Domain annotation for each model (and alignments):
>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1     1e-07   0.00023      84     115 ..     549     580 ..     480     587 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1e-07
       PGAP1  84 sssekeptsviliGHSmGGivaraaltlknyi 115
                 + +++  ++ +liGHSmGG+++r+++   ++ 
  EGE25972.1 549 NGQDEASHNAVLIGHSMGGVISRLLVSDTDLT 580
                 5677888999**************99988753 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.4e-07   0.00031       1     112 [.     485     641 ..     485     755 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.4e-07
                    EEEE--GC.....G..CHHHH..HHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHH.HHHHCCTT.......TTSEEEEEETCHHHHHHHHHHCC CS
  Abhydrolase_6   1 vlllHGagssassW..lvapL..aallaagvhvlapDlpGhGrsdpppldledladl.aalldelaa.....gggpvvlvGHSlGGalalaaapla 86 
                    +++lHG+ ss+  W  l+  L    +l++ ++v+ + +  +   +     ++  ++l +++ ++l+        +++vl+GHS+GG+++ ++++ +
     EGE25972.1 485 IIMLHGLASSPATWvnLTNTLltDSKLNENYQVWQVAYATNL--PILENRYQI-HELiHHTFAKLDPngqdeASHNAVLIGHSMGGVISRLLVSDT 577
                    799***********6534444588888888999*98888775..333333333.66667777777667777778888**********999966666 PP

                    ..........................................EEEEES-..----TTTS----TTH CS
  Abhydrolase_6  87 ........................................lvvgvlldppptalpagllaaalell 112
                                                            ++++++l++p    ++++++++++ +
     EGE25972.1 578 dltqklhtlghkeqyklinhlsadqrqtlsnrlvlsslpqVDEAIFLSAPH--RGTDYADRWFTRA 641
                    777777777777777777777777777666655555555444445555532..2222222222222 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.9e-06    0.0044       5     100 ..     482     577 ..     479     601 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.9e-06
      DUF676   5 dhLvVlvHGlqgnsaDlelikeqlekikeklpee.kieflmsenne..sktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGgliaraaiakl 100
                 ++++++ HGl +++a +  + + l + ++kl+e+ ++  +++  n    +    i++l + +   +    +++ ++     ++ghS+Gg+i+r  +   
  EGE25972.1 482 QKVIIMLHGLASSPATWVNLTNTLLT-DSKLNENyQVWQVAYATNLpiLENRYQIHELIHHTFAKLDPNGQDEASH--NAVLIGHSMGGVISRLLVSDT 577
                 689*********************99.6666666333222222222112333445555555555555555555544..5789***********999754 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00011      0.24       7      36 ..     475     504 ..     470     512 .. 0.87
   2 ?    4.5   0.0     0.012        27      85     119 ..     530     570 ..     521     585 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                    E--SS---EEEEEE--TT--SHHHHHHHH. CS
  Abhydrolase_2   7 vspkdkaqavviflHGlGdsghawaeaakt 36 
                     +p ++ q+v+i+lHGl +s+  w + ++t
     EGE25972.1 475 LKPYNPDQKVIIMLHGLASSPATWVNLTNT 504
                    568899*******************99985 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.012
                    HHHHHHHHHHHHHHHTT......--GGGEEEEEETHHHHHH CS
  Abhydrolase_2  85 ksaekleelidaelkkg......ipssriiigGFSqGaala 119
                    ++  +++eli + ++k         s + +++G S+G++++
     EGE25972.1 530 ENRYQIHELIHHTFAKLdpngqdEASHNAVLIGHSMGGVIS 570
                    666799**********9999999888999*********997 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.6   3.6e+03     105     148 ..      79     119 ..      77     147 .. 0.54
   2 ?   -3.6   0.0       2.5   5.5e+03       4      18 ..     482     496 ..     480     506 .. 0.72
   3 ?   11.1   0.0   7.7e-05      0.17      72      96 ..     552     576 ..     539     584 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.6
  Hydrolase_4 105 ilsaPalkikaklkappllklllkllgkllpklqvsnnlkadsl 148
                  ilsa  + i++k   +  +kll k+ ++++ + +vs+ +++  +
   EGE25972.1  79 ILSACHMLIPPK---QTPAKLLEKTRSSIITNGRVSAATQSILV 119
                  666666666655...34455566666666666666444433333 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.5
  Hydrolase_4   4 kavvvlvHGlaehsg 18 
                  ++v++++HGla++  
   EGE25972.1 482 QKVIIMLHGLASSPA 496
                  6799999*9998755 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 7.7e-05
  Hydrolase_4  72 ehpelplfllGhSmGGliallyllr 96 
                  ++   + +l+GhSmGG+i+ l++ +
   EGE25972.1 552 DEASHNAVLIGHSMGGVISRLLVSD 576
                  44555899**********9998855 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00023      0.51      67      93 ..     546     576 ..     483     587 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00023
                    HHHCTTS....SEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1  67 ldalgdd....kltlvGhSmGGmialayaae 93 
                    ld+ g+d    + +l+GhSmGG i++ + ++
     EGE25972.1 546 LDPNGQDeashNAVLIGHSMGGVISRLLVSD 576
                    66666652221357***********999876 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001      0.23       2      95 ..     485     585 ..     484     677 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
  Palm_thioest   2 vviwhGldsaesn.mqklaeliek.......li.g.tyvknveigeseaedrkasffgnlndqveavckklelangfhaiGfSQGglflRaliercd 88 
                   ++++hGl s+  + ++   +l+ +       ++ + +y++n+ i e+    +  +++++  ++++   ++ e++++  +iG+S Gg++ R l+  +d
    EGE25972.1 485 IIMLHGLASSPATwVNLTNTLLTDsklnenyQVwQvAYATNLPILENR--YQIHELIHHTFAKLDPNGQD-EASHNAVLIGHSMGGVISRLLVSDTD 578
                   678888844444443333333333222221111222333333333332..34444444444444445444.5788899****************998 PP

  Palm_thioest  89 dkknvrn 95 
                     +++++
    EGE25972.1 579 LTQKLHT 585
                   7665555 PP

>> DUF3932  Protein of unknown function (DUF3932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0046        10       9      43 ..     130     164 ..     127     172 .. 0.92
   2 ?   -1.0   0.0      0.96   2.2e+03      49      76 ..     402     428 ..     393     432 .. 0.76
   3 ?    1.3   0.0      0.19   4.1e+02      12      42 ..     512     542 ..     504     550 .. 0.85
   4 ?   -1.5   0.0       1.4   3.1e+03      34      55 ..     723     744 ..     698     748 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0046
     DUF3932   9 tdfsssfdvwvssfvsetptqlkwstlkeliheyt 43 
                 +df +  d   s f  e+p +l+ s + el + y+
  EGE25972.1 130 ADFEACVDDVRSIFFIEMPNRLQLSVFSELYYTYA 164
                 69****************************99997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.96
     DUF3932  49 qtvperisssityyaqrvssasnteiii 76 
                 +t+ e + ss  +ya     ++nt + i
  EGE25972.1 402 NTIDEVL-SSHEFYAYFFNPSNNTHVKI 428
                 5555555.56789999999999998865 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.19
     DUF3932  12 sssfdvwvssfvsetptqlkwstlkelihey 42 
                    ++vw  ++ ++ p   +   + elih  
  EGE25972.1 512 NENYQVWQVAYATNLPILENRYQIHELIHHT 542
                 56799************99999******974 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.4
     DUF3932  34 tlkeliheytalhtlqtvperi 55 
                 t+ + i  yt++h   +  e i
  EGE25972.1 723 TISDGIVPYTSSHLEGAASEII 744
                 4444555566666555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 5549.44
//
Query:       EGE25973.1  [L=219]
Description: adenylate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-55  187.6   0.0    1.6e-55  187.3   0.0    1.0  1  ADK             Adenylate kinase
    5.7e-25   88.3   0.1    1.7e-24   86.8   0.0    1.7  2  AAA_17          AAA domain
    6.9e-16   57.9   0.0    1.4e-15   56.9   0.0    1.6  1  ADK_lid         Adenylate kinase, active site lid
    1.8e-06   28.4   2.4      0.011   16.0   0.2    2.7  3  Hydin_ADK       Hydin Adenylate kinase-like domain
    3.9e-05   24.2   0.0     0.0001   22.9   0.0    1.7  1  AAA_18          AAA domain
     0.0012   18.6   0.0     0.0025   17.6   0.0    1.5  1  Cytidylate_kin  Cytidylate kinase
     0.0078   16.0   0.1      0.012   15.4   0.1    1.4  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
     0.0081   16.3   0.0      0.018   15.2   0.0    1.6  1  AAA_33          AAA domain
  ------ inclusion threshold ------
      0.017   15.6   0.0      0.031   14.7   0.0    1.5  1  AAA             ATPase family associated with various cellula
      0.037   14.3   0.0      0.075   13.3   0.0    1.5  2  AAA_28          AAA domain
      0.095   12.6   0.0       0.15   12.0   0.0    1.3  1  Rad17           Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.3   0.0     1e-58   1.6e-55       1     149 [.       6     186 ..       6     188 .. 0.99

  Alignments for each domain:
  == domain 1  score: 187.3 bits;  conditional E-value: 1e-58
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCHGTTTEEEEESB-SSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkeelekedkkkgfllDGfPRtveqaealeelleee 99 
                 llG+PgaGKGtqa+ + k++g++++stGd+lRa++k+gtelGk+ak+vmd+g+lv+de++++lvke+l+++d+++g ++DGfPRt++qa+al +    +
  EGE25973.1   6 LLGPPGAGKGTQAQLISKEFGIPQISTGDMLRAAIKAGTELGKQAKSVMDAGQLVSDELIINLVKERLKQPDCDNGCIFDGFPRTIPQAKALAD----A 100
                 79******************************************************************************************99....9 PP

                 TSEESEEEEEE--HHHHHHHHHT....................................GSHHHHHHHHHHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK 100 kvkldlvleldvpeevlveRltg....................................DneetvkkRletykkqtkplidyykkk 149
                 ++ +d v+e++vp++ +v+R++g                                    D+ee v++Rl++y++qt+ li++y++ 
  EGE25973.1 101 GIAIDHVIEISVPDDEIVSRMSGrrahlasgrtyhviynppktdgiddvtgealvqrddDKEEVVRDRLSVYHAQTTTLINHYQEV 186
                 ***********************************************************************************985 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   1.1e-27   1.7e-24       1     128 [.       7     133 ..       7     137 .. 0.90
   2 ?   -1.3   0.0       1.6   2.7e+03     103     120 ..     152     169 ..     142     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 1.1e-27
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTT.TS.HSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrg.gl.akardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevl 97 
                 lG+PG+GKgtq++ + +++g++ +s+Gd+lr+ +k g +l ++a++ m+ ++l+ ++ +  +++e++++ ++++g ++dg+pr+  qa++l++      
  EGE25973.1   7 LGPPGAGKGTQAQLISKEFGIPQISTGDMLRAAIKAGtELgKQAKSVMDAGQLVSDELIINLVKERLKQPDCDNGCIFDGFPRTIPQAKALAD------ 99 
                 7*********************************9996676888999999**********************************999998775...... PP

                 HHH..SEEEEEE--HHHHHHHHHHHTT...ST-T CS
      AAA_17  98 eelkpdaiilleadpeeilerrlkdrt...rgrd 128
                 + + +d++i ++++++ei++r+  +r    +gr+
  EGE25973.1 100 AGIAIDHVIEISVPDDEIVSRMSGRRAhlaSGRT 133
                 56889*****************999742336665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.6
                 SEEEEEE--HHHHHHHHH CS
      AAA_17 103 daiilleadpeeilerrl 120
                 +a++  ++d+ee+++ rl
  EGE25973.1 152 EALVQRDDDKEEVVRDRL 169
                 555555666666666555 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   8.7e-19   1.4e-15       1      36 []     124     159 ..     124     159 .. 0.99

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 8.7e-19
                 EEE-TTT--EEETTTB--SSTTB-TTT--.-B--GG CS
     ADK_lid   1 RrvCpkCGrsYhvvfnpPkveglCDkCGepLvqRsD 36 
                 Rr + ++Gr+Yhv++npPk++g++D++Ge LvqR+D
  EGE25973.1 124 RRAHLASGRTYHVIYNPPKTDGIDDVTGEALVQRDD 159
                 9***********99*********************9 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00014      0.23       2      49 ..       4      50 ..       3      57 .. 0.87
   2 !   16.0   0.2   6.7e-06     0.011     172     197 ..      61      86 ..      54      87 .. 0.93
   3 ?   -3.7   0.0       7.6   1.2e+04      23      42 ..      97     116 ..      93     127 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
   Hydin_ADK  2 iivhGaPlsGKtatavtLakkYeaAlltiDsvvleAisdgnssaGlrA 49
                ii+ G+P +GK + a  ++k++++  ++  +++  Ai  g ++ G +A
  EGE25973.1  4 IILLGPPGAGKGTQAQLISKEFGIPQISTGDMLRAAIKAG-TELGKQA 50
                8999****************************99999765.4556665 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 6.7e-06
   Hydin_ADK 172 PedllveIlsERlqlndCyrGvvfDg 197
                  ++l+++++ ERl+  dC  G +fDg
  EGE25973.1  61 SDELIINLVKERLKQPDCDNGCIFDG 86 
                 69***********************9 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 7.6
   Hydin_ADK  23 YeaAlltiDsvvleAisdgn 42 
                    A ++iD+v+   + d++
  EGE25973.1  97 LADAGIAIDHVIEISVPDDE 116
                 55577788888776666554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   6.2e-08    0.0001       1     116 [.       4     127 ..       4     133 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 6.2e-08
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpealdeskrldedkl..dklldaleenssaleegknl.vidghlaeleseaakdik 95 
                 I+l G+pG+GK t a+ +sk+ g+  +  +d+++      ++  +  + + ++d ++l  d+l+ +l + + ++ +++n  ++dg++    +++a    
  EGE25973.1   4 IILLGPPGAGKGTQAQLISKEFGIpQISTGDMLRAAIKAGTELGK--QAKSVMDAGQLvsDELIINLVKERLKQPDCDNGcIFDGFPRTIPQAKALADA 100
                 9********************999955555555444444444444..3334444444211334444444444445565544999999887777666656 PP

      AAA_18  96 k......vvLtaspeelleRlekRgye 116
                 +      + + ++++e   R++ R+ +
  EGE25973.1 101 GiaidhvIEISVPDDEIVSRMSGRRAH 127
                 679999999999999999999999865 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.5e-06    0.0025       3      36 ..       6      39 ..       4      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.5e-06
                    EE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHHH CS
  Cytidylate_kin  3 iDGPagsGKssvaralaeklglkyldtgalYRal 36
                    + GP g+GK++ a+++++++g+  ++tg + Ra 
      EGE25973.1  6 LLGPPGAGKGTQAQLISKEFGIPQISTGDMLRAA 39
                    56******************************85 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   7.2e-06     0.012      36      61 ..       4      29 ..       1      65 [. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.2e-06
      RuvB_N 36 vllyGpPGlGkttlakiiakelgvkl 61
                ++l GpPG Gk t a++i+ke+g+  
  EGE25973.1  4 IILLGPPGAGKGTQAQLISKEFGIPQ 29
                899******************99864 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05     0.018       2     121 ..       4     127 ..       4     135 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrr.rlfg..tdqqsktdytrvldr.lyqilnelarkalsag...rnvildatnlsrrerarflklar 93 
                 ++l G+pG+GK t a+ + k+ g   +s+ +++r ++++  +  ++ +   ++ +    + + +l++++l++    +++i+d   ++  + +++  +  
  EGE25973.1   4 IILLGPPGAGKGTQAQLISKEFGIPQISTGDMLRaAIKAgtELGKQAKSVMDAGQLvSDELIINLVKERLKQPdcdNGCIFDGFPRTIPQAKALADAGI 102
                 6899*******************7777666655526666774444444444444443444555777777777665588999986555555555555444 PP

      AAA_33  94 rlgvpvrivvvetdeetlkeRlakRaan 121
                    + ++++ ++++++++ +R   R a+
  EGE25973.1 103 ---AIDHVIEISVPDDEIVSRMSGRRAH 127
                 ...4558899999999999999998875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.9e-05     0.031       1      28 [.       4      31 ..       4      78 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.9e-05
                EEEESSTTSSHHHHHHHHHHHHTHEEEE CS
         AAA  1 vllyGppGtGKTllakavakelgvefle 28
                ++l GppG GK + a+ + ke+g++ ++
  EGE25973.1  4 IILLGPPGAGKGTQAQLISKEFGIPQIS 31
                689******************9876433 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.6e-05     0.075       1      54 [.       3      58 ..       3      92 .. 0.70
   2 ?   -2.7   0.0       3.7     6e+03     122     141 ..     156     175 ..     126     188 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.6e-05
      AAA_28  1 kivitGgestGKTtlleaLaar.gypvv..pEaareileeklakgedalpwvedlla 54
                +i+++G++++GK t ++ ++++ g+p +   ++ r  ++ +++ g++a     d+ +
  EGE25973.1  3 RIILLGPPGAGKGTQAQLISKEfGIPQIstGDMLRAAIKAGTELGKQAKSVM-DAGQ 58
                79******************998**987789**********99998844433.3333 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.7
      AAA_28 122 dddgeRredleereaiderl 141
                 ++d+  +e +++r  ++++ 
  EGE25973.1 156 QRDDDKEEVVRDRLSVYHAQ 175
                 44555555555555555544 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.9e-05      0.15      49      72 ..       5      28 ..       1      45 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.9e-05
       Rad17 49 LisGPsGCgkstvvkvLskelgik 72
                ++ GP+G gk t  + +ske+gi 
  EGE25973.1  5 ILLGPPGAGKGTQAQLISKEFGIP 28
                456******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1634.19
//
Query:       EGE25974.1  [L=420]
Description: cytochrome c-type biogenesis protein CcmI [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-06   26.8   4.1       0.11   13.0   0.0    3.7  3  TPR_19    Tetratricopeptide repeat
    0.00019   22.0   5.5       0.51   11.3   1.8    3.5  3  TPR_14    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   15.2   0.4        6.5    7.1   0.1    3.1  3  TPR_2     Tetratricopeptide repeat
       0.03   14.1   0.1      0.054   13.3   0.1    1.4  1  Lig_chan  Ligand-gated ion channel


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.7   0.00048       2.2       9      34 ..     189     214 ..     181     222 .. 0.92
   2 !   13.0   0.0   2.5e-05      0.11      11      52 ..     228     269 ..     217     274 .. 0.90
   3 ?    3.7   0.1     0.019        86      37      61 ..     275     298 ..     269     303 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00048
      TPR_19   9 eAlalleqalqedpknaearllLAea 34 
                 +Al++l++a    p+n+e++l +A+ 
  EGE25974.1 189 QALEALARANRLQPDNEEIALTYAQT 214
                 799*********************85 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.5e-05
      TPR_19  11 lalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 +++l+q+l++ p+++ a + +A   + +g++  A+a +++l 
  EGE25974.1 228 HKILTQILTQTPNHEGAMMMMAMGEVRAGNYPNAKAWIARLR 269
                 89***********************************99986 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.019
      TPR_19  37 algqldeAealLdalpeedpddary 61 
                  +g+  eA a Ld+l e   + +++
  EGE25974.1 275 RSGDHSEALASLDKLVENIDN-QQA 298
                 678889999999999888877.333 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   1.8   0.00011      0.51       4      43 ..     174     213 ..     171     214 .. 0.93
   2 ?    0.6   0.0       0.3   1.4e+03      22      42 ..     229     249 ..     216     250 .. 0.83
   3 !    8.8   0.2   0.00071       3.2       5      30 ..     267     292 ..     261     304 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +++l e+++ l+   +A+++l ra +l+Pd++e+ l +aq
  EGE25974.1 174 WMRLSELFMMLEAQPQALEALARANRLQPDNEEIALTYAQ 213
                 899999999999999*********************9998 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.3
      TPR_14  22 allrralalaPddaeawllla 42 
                 ++l ++l + P+++ a +++a
  EGE25974.1 229 KILTQILTQTPNHEGAMMMMA 249
                 678889999999999999987 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00071
      TPR_14   5 lalaeallalGdpdeAiallrralal 30 
                 +++ ++++++Gd+ eA+a l+++++ 
  EGE25974.1 267 RLRSSLMARSGDHSEALASLDKLVEN 292
                 45567899**************9984 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0015       6.5       3      34 .]     173     204 ..     171     204 .. 0.93
   2 ?   -0.4   0.0      0.37   1.6e+03       7      24 ..     248     265 ..     244     269 .. 0.75
   3 ?    4.4   0.0     0.011        48       8      29 ..     270     291 ..     263     295 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0015
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                  +++l ++ + l    +Alea+ +A +l P+n
  EGE25974.1 173 RWMRLSELFMMLEAQPQALEALARANRLQPDN 204
                 6999**************************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.37
       TPR_2   7 lGlayyklgdyeeAleaf 24 
                 +++   ++g+y  A+++ 
  EGE25974.1 248 MAMGEVRAGNYPNAKAWI 265
                 56666789****999876 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.011
       TPR_2   8 GlayyklgdyeeAleafekAle 29 
                   + +++gd+ eAl+ ++k +e
  EGE25974.1 270 SSLMARSGDHSEALASLDKLVE 291
                 567789************9886 PP

>> Lig_chan  Ligand-gated ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.2e-05     0.054      62     117 ..      86     159 ..      78     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
                 HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-SSCCH.HHTGS.................S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.................x RF
    Lig_chan  62 cdesprsvsgRivvavWwffvlillssYtAnLaafltvermqtpiksled.Lakqt.................k 117
                   ++p  + gR ++++W+ +  ++    tA  +a++t+ + q+++ ++ d L + +                  
  EGE25974.1  86 EAQTPVGIKGRAIIMIWIPILAVIAYMMTADRTAVFTLWQAQDKVGQVADdLLTGKidvppewaakestalisA 159
                 467899***************************************98877666555456666666666655551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2880.72
//
Query:       EGE25975.1  [L=41]
Description: hypothetical protein EA1_05928 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 326.19
//
Query:       EGE25976.1  [L=171]
Description: cytochrome c biogenesis family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-52  175.8   0.0    5.2e-52  174.9   0.0    1.4  2  CcmH      Cytochrome C biogenesis protein


Domain annotation for each model (and alignments):
>> CcmH  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.9   0.0   2.9e-56   5.2e-52       2     143 .]       9     154 ..       7     154 .. 0.95
   2 ?   -3.2   0.1      0.26   4.6e+03      42      51 ..     158     167 ..     157     168 .. 0.89

  Alignments for each domain:
  == domain 1  score: 174.9 bits;  conditional E-value: 2.9e-56
                 XXXXXXXXXXXXGGGGS--SSHHHHHHHHHHHHHEE-TTSSS-BTTT--SHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTT-EE---XXXXXXXXX CS
        CcmH   2 llllllalaaaaaeedeelkdpaqeararalseeLRClvCqnqsiadSnaelAkdlrrevremlkaGksdeeivdylvarYGdfVlykPpvkastllLW 100
                 +l++ ++++aaa+ + +e+++p+qea++r l+eeLRC++Cqnq++a+S+a++A+dl+++++em+k+G+sd+ei++y+ +rYGdf++ykPpv++st++LW
  EGE25976.1   9 VLVIGVSTTAAASFDLYEFDSPQQEAQYRVLIEELRCPKCQNQNLAGSDAPIAQDLKQKTYEMVKDGRSDAEIRNYMFERYGDFISYKPPVRPSTWILW 107
                 5778899999999************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXX CS
        CcmH 101 lgPllllllgllvlllllrrrkkkkaeee....elsaeeearleall 143
                 ++P++llll ll++++ +++ ++ +++      +lsa eea+l+++l
  EGE25976.1 108 FFPPMLLLLLLLGWIYKAQKGRSWSKQVPtshaPLSAGEEAKLKKIL 154
                 ****************99999988777768899***********987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.26
                 SS-BTTT--S CS
        CcmH  42 qnqsiadSna 51 
                 qn+s+++S++
  EGE25976.1 158 QNKSLDGSDS 167
                 9*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1310.89
//
Query:       EGE25977.1  [L=196]
Description: periplasmic thiol:disulfide oxidoreductase DsbE [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-13   49.9   0.0    3.6e-13   49.5   0.0    1.1  1  Redoxin        Redoxin
    9.5e-10   38.5   0.0    1.3e-09   38.0   0.0    1.2  1  AhpC-TSA       AhpC/TSA family
    2.7e-05   24.4   0.0    4.2e-05   23.8   0.0    1.3  1  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0     6e-17   3.6e-13       2     133 ..      41     160 ..      40     169 .. 0.92

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 6e-17
                 TTSBB---ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH.HHHHHHHTT-TSEE.EE-TTSHHH CS
     Redoxin   2 agdkaPdftlplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf.vkefwgkeglkfpv.lsDgsaaft 98 
                 +g+++P+++lpl+ +   +++ ++f++ + ++n++ + +c tC aehp+l kl e+    gv +++v+ +++   + + ++k++ +f++ + D +++f+
  EGE25977.1  41 VGNPLPNLSLPLLSDTTRTITKADFPDTPFILNVWGS-WCLTCHAEHPFLLKLHEQ----GVPIIGVNYKDELSeALAYLNKNQDPFVYsVQDVTGDFA 134
                 79**********999999999999*************.***************666....************99***************9********* PP

                 HHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEES CS
     Redoxin  99 kalGlrleedaseglrtpryavidedgkvvyleve 133
                  +lGl          ++p + v+  +g v + + +
  EGE25977.1 135 LDLGLM---------GAPESYVVGTNGIVYQHIIG 160
                 ****55.........99999999999998776655 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   2.2e-13   1.3e-09       1     122 [.      41     155 ..      41     157 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2.2e-13
                 TTSB----EEE..STTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEES.SSCHHHHHHHHH-H.SSEE.EE-TTSHHH CS
    AhpC-TSA   1 vgdkapdfelk..nadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsv.dspeshkkfiekeslnfpl.lsDeegkva 95 
                 vg++ p+ +l+      +t++ +d+ + p +l+++ + wc  C +e p l kl+    e+gv +igv+  d++ +  ++ +k++ +f + + D +g++a
  EGE25977.1  41 VGNPLPNLSLPllSDTTRTITKADFPDTPFILNVWGS-WCLTCHAEHPFLLKLH----EQGVPIIGVNYkDELSEALAYLNKNQDPFVYsVQDVTGDFA 134
                 7999*******88555699******************.**********999987....78********989999************9984679****** PP

                 HHTT-EETTTTECSCEEEEE-TTSBEE CS
    AhpC-TSA  96 kaygvlkeekglalratfvidkegkir 122
                  ++g++        + ++v+ ++g++ 
  EGE25977.1 135 LDLGLM------GAPESYVVGTNGIVY 155
                 ******......99***********96 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     7e-09   4.2e-05       3      95 .]      69     154 ..      67     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7e-09
                    EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-TT-BE CS
  Thioredoxin_8   3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldkngev 95 
                     ++L ++ swc  c a +p l +l+e+     +v i+ v++  +++e  +yl+kn +++  + ++d  +  ++  +++++ P  +v+++ng v
     EGE25977.1  69 PFILNVWGSWCLTCHAEHPFLLKLHEQ-----GVPIIGVNYKDELSEALAYLNKN-QDPFVYSVQDV-TGDFALDLGLMGAPESYVVGTNGIV 154
                    6799******************99986.....58*********************.66666666655.899*******************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      716  (0.0399353); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1464.77
//
Query:       EGE25978.1  [L=674]
Description: cytochrome c-type biogenesis protein CcmF [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-105  352.7  12.7     2e-105  352.7  12.7    3.1  3  CcmF_C           Cytochrome c-type biogenesis protein CcmF C-
    1.8e-51  175.0  23.0    1.8e-51  175.0  23.0    4.1  3  Cytochrom_C_asm  Cytochrome C assembly protein
  ------ inclusion threshold ------
      0.085   11.6  12.8      0.078   11.7   0.5    2.8  3  ResB             ResB-like family
        1.6    9.4   9.7        0.4   11.3   0.5    4.3  3  DUF2651          Protein of unknown function (DUF2651)


Domain annotation for each model (and alignments):
>> CcmF_C  Cytochrome c-type biogenesis protein CcmF C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.0   9.0         4   1.8e+04      75     125 ..       8      69 ..       6     146 .. 0.54
   2 ?   -2.3   4.2      0.45     2e+03     134     198 ..     229     297 ..     177     311 .. 0.57
   3 !  352.7  12.7  4.5e-109    2e-105       1     323 []     317     651 ..     317     651 .. 0.95

  Alignments for each domain:
  == domain 1  score: -6.0 bits;  conditional E-value: 4
      CcmF_C  75 yFnavfvplmvplllll.gvGpl...lrWkraklaellkrllvalv..lalvlall.....l 125
                 yF  + ++++++l ++l ++G +   ++W+r  ++ +++++l+++v  lal++++l     l
  EGE25978.1   8 YFSLLLALVLAMLQAILpAIGVIkhqVQWQRLAPSLAMAQFLAMAVsfLALIAGFLyndfsL 69 
                 66666555444444444144543222677777666555554444221123333333444331 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.45
      CcmF_C 134 vlaalglalavwvvlaalaelaerl....rakakellarlrklprsawGmvlAHlGvavtvlGvalvsa 198
                 ++a+  l+ + w +   + +         +a +++l+ + ++   +aw m+lA + +a+++lG  lv++
  EGE25978.1 229 WWAYYELGWGGWWFWDPVENASLMPwlaaTALMHSLAVTEKRGVFKAWTMMLAIFAFALSLLGTFLVRS 297
                 444444444444443333222111112222344445555566677899999999999999999887765 PP

  == domain 3  score: 352.7 bits;  conditional E-value: 4.5e-109
      CcmF_C   1 LalLvvviGgsLlLfalrapklksggrfalvSREsaLllnNllLvvaaavVllGTLyPlvldalglgkiSVGaPyFnavfvplmvplllllgvGpllrW 99 
                 La+L++viG +Ll+falr+ +l+ +++++l SRE++L++nNl+L+va++vVllGTLyP+++d ++lg++SVG+PyFna+fvpl+++ll ++gvG ++r+
  EGE25978.1 317 LAILTIVIGFGLLMFALRGWRLTVESSYRLKSRETMLVVNNLVLLVATLVVLLGTLYPIIADFFKLGQVSVGPPYFNALFVPLTWLLLGFMGVGVVMRY 415
                 89************************************************************************************************* PP

      CcmF_C 100 kraklaellkrllvalvlalvlalllalll......gelkvlaalglalavwvvlaalaelaerlrakakellarlrklprsawGmvlAHlGvavtvlG 192
                 k+++   l++ l+++++ a+vl+ +la+++      + +++ ++++ +l++wv++  + ++ ++l+++++ ++++l+kl+ s+wGm++AH+Gv v+++G
  EGE25978.1 416 KHDSRPFLAT-LMACAIGAFVLGSALAYMVsqlaeePLFDYGIYVSGILSLWVLIFIILDIKDKLKHHKGGIFSGLAKLSPSYWGMQIAHIGVIVCMMG 513
                 **99886655.555558888888886664435555555678999999******************99******************************** PP

      CcmF_C 193 valvsayeverdvrlkpgesvevagyefefegveeveGpNYtaeraelevsrdgkevatlepekRlYtvqempmteaaidagllrdlYvalGeelede. 290
                 va++s++++e+dv++++g+sv+v+gy+f ++++e ++G NY+a++a++ v+++g+++a+l+p+kR Y v+ mpmte +i+ +ll+++YvalGe+++ + 
  EGE25978.1 514 VAATSSMSIEKDVAMTVGDSVHVQGYDFYLQEFEMIQGVNYDATQATIIVRQHGRQIAVLYPQKRDYVVSMMPMTEVGIRPSLLNEMYVALGEPISTQn 612
                 ***********************************************************************************************9666 PP

      CcmF_C 291 ......awavrlyvkpfvrwiWlGallmalGGllalldr 323
                       +wavr+yvkp+vrwiWlGa++ma+G+++a+ld+
  EGE25978.1 613 gqvdmnTWAVRVYVKPMVRWIWLGAIIMAVGAFIAILDK 651
                 799999*******************************97 PP

>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   2.3       0.2     9e+02      82     147 ..       7      65 ..       3      87 .. 0.57
   2 !  175.0  23.0   3.9e-55   1.8e-51       1     208 [.      90     297 ..      90     301 .. 0.94
   3 !    4.1   0.2    0.0077        35      79     140 ..     496     644 ..     357     648 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.2
  Cytochrom_C_asm  82 sYatliigallsialliierqlkkkkklklsanlkllkqldrlsyriiliGfvlltigiilGsvWa 147
                      +Y+ l+++ +l+++  i+           + ++ +++++l+  +  +  +++ + ++++i+G+++ 
       EGE25978.1   7 GYFSLLLALVLAMLQAILPA-------IGVIKHQVQWQRLAPSLAMAQFLAMAVSFLALIAGFLYN 65 
                      56666666666665554333.......455556666666666666666666666666666666653 PP

  == domain 2  score: 175.0 bits;  conditional E-value: 3.9e-55
  Cytochrom_C_asm   1 lsnleesllllawilsllgllleylarklnlsllaavaliaalillgfalf..........lllaelqesadlnpalqspilmiHvplallsYa 84 
                      ++ +e+slll+++il+++ +l+++++r+l+l++ a+v++i+  + ++++++          +l++ + ++adlnp+lq+p+l++H+p+++++Y+
       EGE25978.1  90 WGGHEGSLLLWMTILATWCMLVAVFSRGLPLQMRARVLSILGGVQVMMLAMmiftsspfdrVLPSLPVDGADLNPLLQDPGLIFHPPMLYMGYV 183
                      889*************************************9885444444445599************************************** PP

  Cytochrom_C_asm  85 tliigallsialliierqlkkkkklklsanlkllkqldrlsyriiliGfvlltigiilGsvWa..eeaWGsywsWDpketaslitWlvfaallh 176
                      +l++ +++++a+l+                 +l   + r+s+ ++l+++ +lt+gi lGs+Wa  e++WG++w+WDp+e+asl++Wl ++al+h
       EGE25978.1 184 GLAVPFAFCMAALW---------------AGRLDAVWTRWSRPWTLVAWTFLTLGIALGSWWAyyELGWGGWWFWDPVENASLMPWLAATALMH 262
                      *************4...............4557888889******************************************************* PP

  Cytochrom_C_asm 177 sri..ek.gwrgkkaailailgflllllayfgvrl 208
                      s +  ek g+ + ++++lai++f l+ll++f+vr+
       EGE25978.1 263 SLAvtEKrGVFKAWTMMLAIFAFALSLLGTFLVRS 297
                      **999889**************************9 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0077
  Cytochrom_C_asm  79 allsYatliigallsialliierql..................................................................... 103
                      +++++ +  ig++++++ +  +++                                                                      
       EGE25978.1 496 SYWGMQIAHIGVIVCMMGVAATSSMsiekdvamtvgdsvhvqgydfylqefemiqgvnydatqatiivrqhgrqiavlypqkrdyvvsmmpmte 589
                      5666666677777777766555555777777777788888888888888888888888888888888888888888888888888888888888 PP

  Cytochrom_C_asm 104 ..................kkkkklklsanlkllkqldrlsyriiliGfvlltigi 140
                                         +++  +++ n++    + + + r+i++G++++ +g 
       EGE25978.1 590 vgirpsllnemyvalgepISTQNGQVDMNTWAVRVYVKPMVRWIWLGAIIMAVGA 644
                      8888888888888888876777778888999999999999999999999988885 PP

>> ResB  ResB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3      0.63   2.8e+03     434     458 ..     307     331 ..     302     340 .. 0.82
   2 ?   11.7   0.5   1.7e-05     0.078     151     190 ..     498     537 ..     492     566 .. 0.90
   3 ?    7.6   1.0   0.00031       1.4     433     465 ..     624     656 ..     614     665 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.63
        ResB 434 srdpgknlvllgalllvlGlvlsly 458
                 + dp+  l+ l+ l++v+G+ l ++
  EGE25978.1 307 AADPTRGLAVLAILTIVIGFGLLMF 331
                 579999999*********9977655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.7e-05
        ResB 151 lGnlvfHialvliligallgslfgfrgnvivpeGqsfnna 190
                 +G+ ++Hi+++++++g+++ s ++++  v ++ G+s+++ 
  EGE25978.1 498 WGMQIAHIGVIVCMMGVAATSSMSIEKDVAMTVGDSVHVQ 537
                 9**********************************99864 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00031
        ResB 433 vsrdpgknlvllgalllvlGlvlslyvrhrRvW 465
                 v  +p + +++lga+++ +G ++++  ++ R++
  EGE25978.1 624 VYVKPMVRWIWLGAIIMAVGAFIAILDKRYRIY 656
                 66789*******************998888886 PP

>> DUF2651  Protein of unknown function (DUF2651)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2       0.2   8.8e+02      25      46 ..      48      68 ..      39      75 .. 0.62
   2 ?   -1.6   0.2      0.97   4.3e+03      47      64 ..      97     114 ..      91     145 .. 0.73
   3 ?   11.3   0.5     9e-05       0.4      36      70 ..     260     296 ..     249     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.2
     DUF2651 25 yivpmitfaisliltfaifdls 46
                +++  ++f+  li+ f++ d+s
  EGE25978.1 48 FLAMAVSFL-ALIAGFLYNDFS 68
                555555554.466666666665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.97
     DUF2651  47 flvwvivytilsfivsii 64 
                  l w  + +  ++ v++ 
  EGE25978.1  97 LLLWMTILATWCMLVAVF 114
                 566777777777776664 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 9e-05
     DUF2651  36 liltfai..fdlsflvwvivytilsfivsiitkiivr 70 
                 l+  +a+     +f  w+++ +i++f++s++  ++vr
  EGE25978.1 260 LMHSLAVteKRGVFKAWTMMLAIFAFALSLLGTFLVR 296
                 5555555324557889*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1089  (0.0607396); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.34s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 4214.89
//
Query:       EGE25979.1  [L=440]
Description: hypothetical protein EA1_05948 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0025   17.6   1.4       0.39   10.5   0.3    2.4  2  DUF2785   Protein of unknown function (DUF2785)


Domain annotation for each model (and alignments):
>> DUF2785  Protein of unknown function (DUF2785)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1   0.00041       7.4      97     141 ..      80     123 ..      69     141 .. 0.73
   2 !   10.5   0.3   2.2e-05      0.39      67     109 ..     141     183 ..     124     187 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00041
     DUF2785  97 elivkkltrtqsvlaadEdeRlatailalleknkleeetllawle 141
                 +  ++kl  ++++++a E+e++a+ i+a + kn le+   + +le
  EGE25979.1  80 DQTLSKLGSLDEFFQAMEPEEMAEFITATVDKN-LESLIDEIMLE 123
                 5667899999*********************99.55444444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 2.2e-05
     DUF2785  67 WaHafahiadlldellkepelkradailllelivkkltrtqsv 109
                 +aHa +h+a +++ l+++ +++ ++ +++ e+iv k+++  ++
  EGE25979.1 141 YAHAHSHLAAIMKSLVMDLTYNVESLVDMREMIVTKMENDRKL 183
                 9************************************996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2882.16
//
Query:       EGE25980.1  [L=33]
Description: hypothetical protein EA1_05953 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.052   13.3   0.0      0.052   13.3   0.0    1.1  1  DUF4190   Domain of unknown function (DUF4190)


Domain annotation for each model (and alignments):
>> DUF4190  Domain of unknown function (DUF4190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.9e-06     0.052      21      44 ..       2      25 ..       1      33 [] 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-06
     DUF4190 21 ivavilGhvAlrqirrsgerGkgl 44
                ++avil  vAl +i++ + +G++l
  EGE25980.1  2 VFAVILSKVALYKIKEYKIKGNAL 25
                79**************99777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 267.74
//
Query:       EGE25981.1  [L=202]
Description: putative methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-49  165.5   0.0    1.1e-48  165.3   0.0    1.0  1  Cons_hypoth95    Conserved hypothetical protein 95
    5.3e-06   26.1   0.0    7.7e-06   25.6   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    2.2e-05   24.0   0.0    3.1e-05   23.6   0.0    1.2  1  MTS              Methyltransferase small domain
    0.00063   19.7   0.0     0.0011   18.9   0.0    1.4  1  AAA_31           AAA domain
     0.0012   19.5   0.0     0.0018   18.9   0.0    1.2  1  Methyltransf_25  Methyltransferase domain
     0.0023   17.7   0.0     0.0031   17.3   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
     0.0042   18.1   0.0      0.007   17.4   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
     0.0044   16.5   0.0     0.0094   15.4   0.0    1.5  2  SAM_MT           Putative SAM-dependent methyltransferase
  ------ inclusion threshold ------
      0.011   15.5   0.1       0.44   10.2   0.1    2.2  1  UPF0020          Putative RNA methylase family UPF0020
      0.022   14.0   0.0      0.025   13.7   0.0    1.1  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera
      0.083   12.7   0.0       0.11   12.2   0.0    1.3  1  N6-adenineMlase  Probable N6-adenine methyltransferase
       0.11   12.3   0.0       0.13   12.0   0.0    1.3  1  Nrap_D2          Nrap protein PAP/OAS-like domain
       0.13   11.4   0.1        0.3   10.2   0.1    1.5  1  Methyltransf_3   O-methyltransferase
       0.14   11.4   0.0       0.18   11.0   0.0    1.2  1  RsmJ             Ribosomal RNA large subunit methyltransferas
       0.16   11.6   0.1       0.88    9.2   0.1    1.9  2  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran


Domain annotation for each model (and alignments):
>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   0.0   8.9e-52   1.1e-48       1     179 [.      15     195 ..      15     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.3 bits;  conditional E-value: 8.9e-52
                    EEXXSCCCTTXEEEXTTXXXXXSSSHHHHHHHHHHHCCCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEE CS
  Cons_hypoth95   1 lriigGkakgrkLkvlegkstRPttdrvrealFnilaaeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetael 96 
                    +riigG+ k+r L++ +++++RPt dr +e+lFn+l  ++++a++LD +aGsGalg+EA+SRgak a+l+e + + +++lk+n + lkl+++ +++
     EGE25981.1  15 VRIIGGQHKRRLLSFIDAQGLRPTPDRLKETLFNWLTGYLTDAKILDTCAGSGALGFEAVSRGAKTATLIEPNLAQAQMLKQNAKLLKLSDRLTIV 110
                    7*********************************************************************************************** PP

                    EES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHHHTT-EEEEEEEEEEEECC.SSS-..-.-TTEEEEEEEEETTEEEE CS
  Cons_hypoth95  97 kedaleallklakkkeefdivflDPPyakellieevlelleekkllkenalvvveteke.kelp..espenlelvkekkygettla 179
                      da +al++   ++  fdi+f+DPPya +l+ + +le l ++ l++ ++ +++e +k  ++++  +  ++++l+k+ k+g+ + +
     EGE25981.1 111 STDAISALNTMHDRHDAFDIIFIDPPYALNLW-QPILENLLDNALIHADSRIYLEADKPlHSILddDTSAKFTLIKSTKVGQAMAY 195
                    *******************************9.*************************9555542245789999***999998765 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   6.4e-09   7.7e-06       3      81 ..      58     137 ..      56     138 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 6.4e-09
  Methyltransf_15   3 vilDlfsGaGGnviqfalv.fekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpPw 81 
                       ilD ++G+G    +      ++   ie nl + ++ ++Na++   sd++t+v  d  ++l++++ ++  +d++f+ pP 
       EGE25981.1  58 KILDTCAGSGALGFEAVSRgAKTATLIEPNLAQAQMLKQNAKLLKLSDRLTIVSTDAISALNTMHDRHDAFDIIFIDPPY 137
                      589999999976555555524455679***************************************************95 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.6e-08   3.1e-05      31     109 ..      55     139 ..      39     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.6e-08
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST.....TS-EEEEEE---STT CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeve.....ekkfdlivsNPPfha 109
                 ++ k+lD ++G G+lg ++ ++  + + tl++ + +  ++ k+n++  kl+  +++v +d++++++     ++ fd+i   PP+  
  EGE25981.1  55 TDAKILDTCAGSGALGFEAVSRGAK-TATLIEPNLAQAQMLKQNAKLLKLSdrLTIVSTDAISALNtmhdrHDAFDIIFIDPPYAL 139
                 5689****************99988.79**********************999999999998877633333468*********865 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   9.4e-07    0.0011      15     144 ..       7     161 ..       3     168 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.4e-07
      AAA_31  15 KTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekne........iektlyev..........lieeknikeaiiktkvenldlipssidLaeaei 95 
                 K+T +vn    +  + k+ Ll  +D+Q+   t  +++++         ++ +++++           +++     ++i+ +  + +++  + +L ++++
  EGE25981.1   7 KSTKAVNQVRIIGGQHKRRLLSFIDAQGLRPTPDRLKETLfnwltgylTDAKILDTcagsgalgfeAVSRGAKTATLIEPNLAQAQMLKQNAKLLKLSD 105
                 67777777777777777777777777777666444322223344444455555555444444433223444444445556678889999999******* PP

      AAA_31  96 elvelekkeeilkellekvkdeYDyiiiDcp.......PsLglltenaLvasdsvi 144
                 +l+ +++      +++++ +d +D+i+iD p       P L+ l++naL+ +ds i
  EGE25981.1 106 RLTIVSTDAISALNTMHDRHDAFDIIFIDPPyalnlwqPILENLLDNALIHADSRI 161
                 **9999999999999**************984444444666778899999999865 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-06    0.0018       1      88 [.      59     152 ..      59     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.5e-06
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBC....CGBSSSTTTEEEEEEEST.GGG.SSHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgda....edlpfedgsfDlvvssga.lhh.lsdedlekal 86 
                      +Ld ++G+G l +++  r g+++ t ++++ ++ +  +++a+  +l  ++++v  da    ++++  ++ fD++++    + + l+++ le++l
       EGE25981.1  59 ILDTCAGSGALGFEAVSR-GAKTATLIEPNLAQAQMLKQNAKLLKLsdRLTIVSTDAisalNTMHDRHDAFDIIFID-PpYALnLWQPILENLL 150
                      8*****************.69*********9999999999988888899***99999855555678999******93.3344446666666666 PP

                      HH CS
  Methyltransf_25  87 ke 88 
                      ++
       EGE25981.1 151 DN 152
                      65 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.6e-06    0.0031       5      99 ..      57     151 ..      55     183 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.6e-06
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklled..ekfDlilsnevlnaladpdkil 94 
                       ++lD  +G+G+l+fe+ ++    ++ ++i+ +    +  ++na+ l+l+ +++    d+ + l++ ++d  + fD+i+ + + +al+  + il
       EGE25981.1  57 AKILDTCAGSGALGFEAVSR--GAKTATLIEPNLAQAQMLKQNAKLLKLSdRLTIVSTDAISaLNT-MHDrhDAFDIIFID-PPYALNLWQPIL 146
                      689***************66..346689*********************99***********6665.66678*******96.555666666666 PP

  Methyltransf_31  95 eeier 99 
                      e++ +
       EGE25981.1 147 ENLLD 151
                      66554 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.9e-06     0.007      17      81 ..      73     139 ..      59     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.9e-06
  Methyltransf_24  17 alrrngagrlvavdhdpgaeeaaalare....aglddrvrlikadseealasla..agsiDllfiDgghaa 81 
                      a+ r +  + + ++++    ++a+++++    ++l+dr+++++ d+ +al ++   ++ +D++fiD + a 
       EGE25981.1  73 AVSRGA-KTATLIEPNL---AQAQMLKQnaklLKLSDRLTIVSTDAISALNTMHdrHDAFDIIFIDPPYAL 139
                      444444.4789999999...666666666777*******************99988899*******77544 PP

>> SAM_MT  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.8e-06    0.0094      98     158 ..      73     137 ..      40     140 .. 0.71
   2 ?   -3.1   0.0       3.4   4.1e+03     106     199 ..     147     161 ..     143     179 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.8e-06
      SAM_MT  98 liErhpvvaaLLedglkRak...qdaeigellaerlkLlaasslealakleee..kpdvvYlDPmy 158
                  + r +  a+L+e  l  a+   q+a++ + l+ rl+++++++++al++++++  + d++++DP y
  EGE25981.1  73 AVSRGAKTATLIEPNLAQAQmlkQNAKLLK-LSDRLTIVSTDAISALNTMHDRhdAFDIIFIDPPY 137
                 345555566677776666651114555555.889***************9998889********88 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.4
      SAM_MT 106 aaLLedglkRakqdaeigellaerlkLlaasslealakleeekpdvvYlDPmyPhkkksalvKKemrvfqqlvGadedadeLleaalalakkRv 199
                   LL+++                                                                               l +a++R+
  EGE25981.1 147 ENLLDNA-------------------------------------------------------------------------------LIHADSRI 161
                 4444444...............................................................................44444444 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00037      0.44      23      85 ..      50     115 ..      37     154 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00037
                 HTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS...HHHHHHHHHH.HH--EEEEES- CS
     UPF0020  23 lagwkpgepllDPmCGsGtilIEaallganiapgllrefvle...lkaeaeeear.aelklygsDld 85 
                 l+g+  + ++lD   GsG++  Ea   ga+ a  l+ ++  +   lk++a+  +  ++l ++  D +
  EGE25981.1  50 LTGYLTDAKILDTCAGSGALGFEAVSRGAKTA-TLIEPNLAQaqmLKQNAKLLKLsDRLTIVSTDAI 115
                 78888888888988899999999888888888.3444444444545555544333355555555544 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.1e-05     0.025      51     128 ..      57     135 ..       5     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
                 EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHH...HHC--SS-EEEEEE-- CS
         TRM  51 ikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveeivvineddAnv...llaekkkrfdviDlDP 128
                  k+ld+ ++sG  +        g+k++ + + +    +++k+N+kl + +++++i ++dA     +++ ++ +fd+i +DP
  EGE25981.1  57 AKILDTCAGSGALGFEAVS--RGAKTATLIEPNLAQAQMLKQNAKLLKLSDRLTIVSTDAISalnTMHDRHDAFDIIFIDP 135
                 6789999999855554444..466666666666667799***********87777777765511166699999*******8 PP

>> N6-adenineMlase  Probable N6-adenine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.5e-05      0.11      83     107 ..     122     149 ..      69     196 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.5e-05
  N6-adenineMlase  83 eelkgkfdviviDPPF...lseeclkkl 107
                      ++ +++fd+i iDPP+   l +++l++l
       EGE25981.1 122 HDRHDAFDIIFIDPPYalnLWQPILENL 149
                      334789**********777444444442 PP

>> Nrap_D2  Nrap protein PAP/OAS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.13      47     120 ..      79     147 ..      34     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                 TS-BSS-TT--HHHHHHHHHHHHHHS--SS-EEEE-------BEEES-.--SS...--EEETTT--BTTTT--H CS
     Nrap_D2  47 kgrkklskslssyqlfkavlqfLastdltkkpiflgaskseeskkeseeefskafepvlvdpsgklNllakmta 120
                 k+ + + ++l   q++k   + L  +d   + ++    + + s+ ++ ++ ++af+ +++dp   lNl+  + +
  EGE25981.1  79 KTATLIEPNLAQAQMLKQNAKLLKLSDR-LTIVST---D-AISALNTMHDRHDAFDIIFIDPPYALNLWQPILE 147
                 6777888999999999999999999883.333333...3.456778888999****************987655 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00025       0.3      78     130 ..      84     134 ..      76     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00025
                     EES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSSS---EEEEEE- CS
  Methyltransf_3  78 ididreayeialkfiqkagvaekieliegdalkvLeelvkdkklpefDfifvD 130
                     i+ +  ++++ ++  +   + +++ +  +da ++L+ + + +    fD+if+D
      EGE25981.1  84 IEPNLAQAQMLKQNAKLLKLSDRLTIVSTDAISALNTMHDRH--DAFDIIFID 134
                     566666777888888888899999*************98765..79******9 PP

>> RsmJ  Ribosomal RNA large subunit methyltransferase D, RlmJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.18      62     137 ..      60     139 ..      39     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
                 --EEE-HHHHH.HHHS-TT-EEEEE---TTHHHHHHHH...TTT-TTEEEESS-HHHHHHHS-S-TTS-EEEEE----SS CS
        RsmJ  62 lryYpGsplla.rrllReqDrlvlteLhpkdaalLkae...lakdkrvrvkkadGfaalkaklppkekRglvliDPPyea 137
                 l++ +Gs  l   ++ R +  ++l+e    +a++Lk++   l+   r ++ ++d  +al+    +++   +++iDPPy  
  EGE25981.1  60 LDTCAGSGALGfEAVSRGAKTATLIEPNLAQAQMLKQNaklLKLSDRLTIVSTDAISALNTMHDRHDAFDIIFIDPPYAL 139
                 67778888886255679999999***9999*****98634366789********************************75 PP

>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.48   5.8e+02       5      42 ..      43      77 ..      43      84 .. 0.77
   2 ?    9.2   0.1   0.00074      0.88     154     188 ..     104     138 ..      85     141 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.48
                     SCTTHHHHHCCS-..--SEEEETT-TTSCCHHCS...S CS
  MethyltransfD12  5 KrkllpeIkelipkdkgktfvepFaGggaVffeakkqg 42
                     K++l +++  ++    + ++ +  aG+ga++fea ++g
       EGE25981.1 43 KETLFNWLTGYLT---DAKILDTCAGSGALGFEAVSRG 77
                     6777777777777...35789999*********97754 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00074
                      HHHHHHCCEEEC-CHHHHTT--TTE.EEEE--S-T CS
  MethyltransfD12 154 seklknakiecgdfdavllkakieddivYlDPPYn 188
                      s +l  +  ++ ++  ++ ++++  di+++DPPY+
       EGE25981.1 104 SDRLTIVSTDAISALNTMHDRHDAFDIIFIDPPYA 138
                      44444455555555566677777788********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1603.62
//
Query:       EGE25982.1  [L=373]
Description: aspartate-semialdehyde dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-54  184.3   0.0    2.9e-54  184.0   0.0    1.1  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    1.4e-22   80.4   0.0    2.3e-22   79.7   0.0    1.4  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   0.0   3.2e-58   2.9e-54       4     184 .]     147     356 ..     144     356 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 3.2e-58
                      HHHCTT.EEEEEEEEEEEGGGCHHHHHHHHHHH.........................HHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTTTCH CS
  Semialdhyde_dhC   4 LldalgelervivatyqavSGaGkkgvreLlkq.........................vaelqrsdeakpgvfgvpiagNlipyidkeedkgep 72 
                      L+ + g +e+v+ +tyqa+SGaG++++reL+k                           a++qrsd +++++fg+ +ag+lipyid+++d+g  
       EGE25982.1 147 LFRR-GWVEWVSAMTYQAASGAGANNMRELIKGmgvlrdsvsdqlddpasaileidrtIADTQRSDDFPKQHFGAVLAGSLIPYIDSQLDNG-- 237
                      6666.779*************************************************99*********************************.. PP

                      CBHHHHHHHHHHHHHCTESC.SEE...EEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCS..TTEEEEESS...HCHHSSHHHHTTCSSS CS
  Semialdhyde_dhC  73 etreelkavaetkkilefte.kvs...atcvrVPvlrGhseavtiklklkdveveeveellaaa..pevkvvvne...eedrPtpaavaggtns 157
                      ++ree+ka+aet+kil+ ++ + +   ++cvr++++r+hs+a+tikl+ kd++++e+ ++l++   p+  vv+n+   +++r+tp+av+g t++
       EGE25982.1 238 QSREEWKAQAETNKILGKSAdETInidGICVRIGAMRCHSQALTIKLT-KDIPLAEITTALRESnnPWLDVVENDkaaSMERLTPVAVTG-TLN 329
                      *****************9998555688********************5.**************999***********************9.9** PP

                      EEEEEEEEETTCTTEEEEEEEEETTTT CS
  Semialdhyde_dhC 158 vsVGRirkdemgdeglklvvvgDNllk 184
                      v VGR+rk++mg e+l +++vgD+ll+
       EGE25982.1 330 VAVGRLRKLNMGGEYLTAFTVGDQLLW 356
                      *************************98 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   2.6e-26   2.3e-22       2     121 .]       3     122 ..       2     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 2.6e-26
                     EEEETTTSHHHHHHHHHHHC..TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTS.. CS
  Semialdhyde_dh   2 vaivGatGyvGqellrlLee..hpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeelkevdivflalpagvskelapklaeagv.. 91 
                     v++vG++G+vG++l+ ++ e  +++    v++s+s+ aG +  +      ++   +++d +d+ el+++d ++++++++++k+++ +l+++g+  
      EGE25982.1   3 VGLVGWRGMVGSVLMSRMVEegDFQHITPVFFSTSN-AGGQAPSFD----GVDGGTLKDaTDILELSRCDAIITCQGGDYTKQVHSALRDSGWhg 92 
                     9*************8887776999999999999999.777777774....599999999999********************************* PP

                     EEEESSSTTTTSTTSEBE-HHHHGGGGGGH CS
  Semialdhyde_dh  92 kviDlssdfRlkddavyvlpevnreaikka 121
                     ++iD++s +R+++da+++l+++nr+ i+ka
      EGE25982.1  93 YWIDAASSLRMQEDAIIILDPINRDVIDKA 122
                     **************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2994.76
//
Query:       EGE25983.1  [L=329]
Description: putative L-asparaginase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-30  105.5   0.0    4.3e-30  104.7   0.0    1.4  1  Asparaginase    Asparaginase, N-terminal
    9.6e-11   41.9   0.0    1.6e-10   41.2   0.0    1.3  1  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
  ------ inclusion threshold ------
      0.077   12.8   0.2       0.39   10.6   0.0    2.0  2  DUF2064         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> Asparaginase  Asparaginase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.0   7.3e-34   4.3e-30       2     168 ..       8     180 ..       7     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 7.3e-34
                   EEEEEEESGGGEEECTTS--CCEES-HHHHHCCTTTCCCCSEEEE...EEEEEE-GGG--HHHHHHHHHHHHHHC.CT-SEEEEE--STTHHHHHHH CS
  Asparaginase   2 vlvlatGGTiasekdesggalapalsaeellealpelekiaeles...eqlanidSsnmtpadwlklaeaieeal.eeydgfVvlhGTDTlaytAsa 94 
                   ++++++GGT++s +++ + al p   ae +l  l++l  + + +    ++   +dSs mtp+d++ ++e i +a+ ++y+ fV+++GTDTl++ A++
    EGE25983.1   8 ICLIYAGGTFGSHGTPLS-AL-P---AEIFLPILSNLYGTTDHHIkilNNQIIKDSSLMTPSDFVGFYELILTAYhDGYRKFVLITGTDTLSFLAAF 99 
                   789*************99.33.4...5666666655555544444445666789*********************555******************* PP

                   HHHHEES.S.SEEEEE--SS-T.........TSTT-SHHHHHHHHHHHHHCGGTTSECEEEETTEEEETTTEEE-BSSSSS-EE CS
  Asparaginase  95 Lslmlknld.kpvvltGsqrpl.........selrsDgpeNlldAllvaasseriagvlvvfngkllranrvtKvhtssldaFe 168
                   L+ ++++++   +v+tGs+ pl          +  sD+++Nl ++l +aa++    g +v f+++ ++a+ ++K+++++ +aF 
    EGE25983.1 100 LAHAFDEFTdLSLVITGSMQPLllpqcadlsINYDSDAWNNLSQSLDLAAAQ---CGTFVHFHHQSFNAKHTQKINSQAPNAFM 180
                   *****886549******************99999****************88...9***************************6 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   2.7e-14   1.6e-10       5      99 ..     218     314 ..     214     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2.7e-14
                     EE--TT--HHHHHHHHHT.T--EEEEEEBTTTB--H..HHHHHHHHHHTTT-EEEEEESSSBS-----H.....HHHHHTEEE-TT--HHHHHHH CS
  Asparaginase_C   5 lklhpgmdtkvlkallkk.gakGvvlegtGvGnlps..allealkeakargivvvatsqcpsgsvsnseyeagkelerlgvisaddmtpeaarik 96 
                     +++ p+  +++ ++ll +  a +v+l g+G+Gnlp+  a+++al+++++rg+ ++ t+ c +g+++ + y+ag    + gv +++ +t+  ++ +
      EGE25983.1 218 VYALPNDPNALADELLVAaDACAVILIGYGAGNLPKsqAIIDALAKLTDRGVAIICTTMCAYGGTNTD-YAAGAWQYEHGVWASGSLTIPSIYGQ 311
                     56667777777777664449***************889*****************************9.99****************99877766 PP

                     HHH CS
  Asparaginase_C  97 Lml 99 
                       +
      EGE25983.1 312 ILW 314
                     655 PP

>> DUF2064  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.5e-05      0.39      58      93 ..      78     114 ..      71     118 .. 0.86
   2 ?   -0.6   0.1      0.19   1.1e+03      60      93 ..     237     271 ..     221     281 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.5e-05
                 HTT-S.EEEEE-SS-TT--HHHHHHHHHHTTT-SEEE CS
     DUF2064  58 eagee.pvlliGsDcpqltaalleqAfeaLeeadaVl 93 
                  +g++  vl+ G+D+ ++ aa l+ Af++ ++  +V+
  EGE25983.1  78 HDGYRkFVLITGTDTLSFLAAFLAHAFDEFTDLSLVI 114
                 56788678999*******************9999998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.19
                 T-SEEEEE-SS-TT--H.HHHHHHHHHTTT-SEEE CS
     DUF2064  60 geepvlliGsDcpqlta.alleqAfeaLeeadaVl 93 
                 +  +v+liG    +l++ + + +A+++L+++ + +
  EGE25983.1 237 DACAVILIGYGAGNLPKsQAIIDALAKLTDRGVAI 271
                 33489999999988875257889999999887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2511.25
//
Query:       EGE25984.1  [L=268]
Description: tRNA pseudouridine synthase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-36  124.5   0.0    6.2e-27   94.2   0.0    2.1  2  PseudoU_synth_1  tRNA pseudouridine synthase
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.22   11.3   0.0    1.2  1  Acid_PPase       Acid Phosphatase


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.9e-10   1.7e-06       4     107 ..      11     105 ..       9     106 .. 0.96
   2 !   94.2   0.0   6.9e-31   6.2e-27       2     107 ..     146     246 ..     145     247 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.9e-10
  PseudoU_synth_1   4 elvGthdfgsfckqkqekkntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiavetapa 97 
                      e++Gt++ g +  q+qe+   v+ ++e a++ +++e      +++ ++g++d++V+a   ++  v+  ++s   + +  n+ ++++ia +++++
       EGE25984.1  11 EFIGTRYRG-W--QRQEEVIGVQAVIEKALSTIANE-----SIELIAAGRTDAGVHAGNMIAHFVTHAERSAHSWLRGTNSLLPDDIALRWVQP 96 
                      799****99.9..8999999***************9.....9**************************************************** PP

  PseudoU_synth_1  98 vglvlfhvrY 107
                       +  +fh+r+
       EGE25984.1  97 MPD-DFHARF 105
                      ***.*****9 PP

  == domain 2  score: 94.2 bits;  conditional E-value: 6.9e-31
  PseudoU_synth_1   2 akelvGthdfgsfckqkqekkntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiaveta 95 
                      ++  vGthdf+sf+++ ++++++vrt+++a++     +++++l ++++++gFl+h+VR+++g+lfavg+g++spe + el+ ak+r+  a +ta
       EGE25984.1 146 SQFIVGTHDFSSFRAAACQSNQPVRTVTHANLF----QHGSYLILDIQADGFLHHMVRNIMGALFAVGRGEISPETFYELMLAKNRTL-APPTA 234
                      56679****************************....778889******************************************998.***** PP

  PseudoU_synth_1  96 pavglvlfhvrY 107
                      +a gl+  ++ Y
       EGE25984.1 235 SADGLYFINAYY 246
                      ********9999 PP

>> Acid_PPase  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.5e-05      0.22      45      87 ..      28      70 ..      16      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.5e-05
                ---TTHHHHHHHHHHTT--EEEEE--S-HHHHHHHHHHTT-G. CS
  Acid_PPase 45 klypdveeileelkskevklavaSrtdepdlarelLklleind 87
                 +    e++l+++++++++l++a rtd++  a +++ ++  ++
  EGE25984.1 28 GVQAVIEKALSTIANESIELIAAGRTDAGVHAGNMIAHFVTHA 70
                55555678999999************************98873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2110.47
//
Query:       EGE25985.1  [L=28]
Description: hypothetical protein EA1_05978 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       154  (0.00858944); expected 358.6 (0.02)
Passed bias filter:                      128  (0.00713927); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 246.18
//
Query:       EGE25986.1  [L=73]
Description: translation initiation factor IF-1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-28   97.7   0.1    2.8e-28   97.5   0.1    1.0  1  eIF-1a         Translation initiation factor 1A / IF-1
     0.0039   16.9   0.0     0.0047   16.6   0.0    1.3  1  RsgA_N         RsgA N-terminal domain
     0.0047   17.3   0.1     0.0066   16.8   0.1    1.2  1  S1             S1 RNA binding domain
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.15   12.0   0.0    1.2  1  OB_aCoA_assoc  DUF35 OB-fold domain, acyl-CoA-associated


Domain annotation for each model (and alignments):
>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.1   6.3e-32   2.8e-28       1      64 []       8      71 ..       8      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 6.3e-32
                EEEEEEEEEEETTTEEEEEE.SSSSBEEEEE-HHHH.CT----TT-EEEEEE-TT-TTEEEEES- CS
      eIF-1a  1 gevigkViealgnnlfrVelpdngkevlaeipgkfR.nkiwikrGdyVlVelspydltkGrIvyr 64
                +e++g Vi  l+n lf+V+l dng+e++a+i+gk+R ++i+i+ Gd+V Ve++pydltkGrI+yr
  EGE25986.1  8 IEFEGEVIDTLPNTLFKVRL-DNGHEIIAHISGKMRkHYIRILTGDKVKVEMTPYDLTKGRITYR 71
                699*****************.7******************************************8 PP

>> RsgA_N  RsgA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.1e-06    0.0047      12      47 ..      23      59 ..      11      68 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
      RsgA_N 12 YyVk.eegeiyecRaRGkFRkkkisplVGDrVefele 47
                ++V+ ++g+ + + + Gk Rk+ i++l GD+V++e +
  EGE25986.1 23 FKVRlDNGHEIIAHISGKMRKHYIRILTGDKVKVEMT 59
                6776456677788999*****************9965 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.5e-06    0.0066       8      70 ..      10      68 ..       3      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
                EEEEEEEEET.TEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEE CS
          S1  8 veGeVtsvtk.gGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrri 70
                +eGeV++  +   + V+l+ng+e+  ++s  +r+      + ++  Gd+vkv+ +  d +++ri
  EGE25986.1 10 FEGEVIDTLPnTLFKVRLDNGHEIIAHISGKMRK-----HYIRILTGDKVKVEMTPYDLTKGRI 68
                899***999956666**************99998.....9*******************99998 PP

>> OB_aCoA_assoc  DUF35 OB-fold domain, acyl-CoA-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.4e-05      0.15      27      64 ..      18      58 ..       8      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.4e-05
                   EEEEEEEEE-TT...-EE-EEEEEEES.....TT-B-EEE- CS
  OB_aCoA_assoc 27 aPyvvgvVeLdegvrimarlvgvdpde...vriGmrVravf 64
                    P ++  V+Ld+g  i+a++ g  +     +  G++V++++
     EGE25986.1 18 LPNTLFKVRLDNGHEIIAHISGKMRKHyirILTGDKVKVEM 58
                   5777888*****************999977449****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 645.70
//
Query:       EGE25987.1  [L=232]
Description: hypothetical protein EA1_05988 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-07   29.5   0.0    6.7e-07   29.4   0.0    1.2  1  Palm_thioest   Palmitoyl protein thioesterase
    2.2e-06   27.4   0.1    1.3e-05   24.9   0.1    2.0  1  DUF676         Putative serine esterase (DUF676)
    2.4e-06   28.3   0.3    2.6e-06   28.2   0.3    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    5.1e-06   26.4   0.1      8e-06   25.7   0.1    1.2  1  PGAP1          PGAP1-like protein
    3.1e-05   23.8   0.0    4.2e-05   23.3   0.0    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold
    5.5e-05   22.5   0.0    7.2e-05   22.1   0.0    1.1  1  LCAT           Lecithin:cholesterol acyltransferase
    0.00068   19.0   0.0    0.00089   18.6   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0011   18.4   0.0     0.0017   17.7   0.0    1.4  1  DUF915         Alpha/beta hydrolase of unknown function (DUF9
     0.0026   17.6   0.0     0.0044   16.9   0.0    1.3  1  Lipase_3       Lipase (class 3)
  ------ inclusion threshold ------
      0.013   15.7   0.0      0.023   14.9   0.0    1.4  1  PNKP-ligase_C  PNKP adenylyltransferase domain, C-terminal re
      0.039   13.5   0.0      0.058   12.9   0.0    1.2  1  LIDHydrolase   Lipid-droplet associated hydrolase
       0.11   12.4   0.1       0.18   11.8   0.1    1.4  1  UPF0227        Uncharacterised protein family (UPF0227)
       0.24   10.3   0.0       0.32    9.9   0.0    1.1  1  DUF726         Protein of unknown function (DUF726)


Domain annotation for each model (and alignments):
>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   4.9e-10   6.7e-07      28     108 ..      23     106 ..       7     188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.9e-10
  Palm_thioest  28 tyvknveigeseaedrkasffgnlndqvea...vckk.lelangfhaiGfSQGglflRaliercddkknvrnlislggpqaGvfg 108
                    + k++++g s  +  ++s+++++    e+   + ++ ++ ++ ++++G+S Ggl++R+++ +++    +++ ++lg+p+ G   
    EGE25987.1  23 LEKKLINLGLSTHRYGYRSLMQPIAVHSENlhqYLTQtHDVNRPINLVGHSLGGLVIRHFLANYPVWR-IHRCVTLGTPHCGSQV 106
                   4556777777777788888888887776664443334677899*********************8776.************9865 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   9.2e-09   1.3e-05       7     133 ..       6     108 ..       2     120 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 9.2e-09
      DUF676   7 LvVlvHGlqgnsaDlelikeqlekikeklpeekieflmsennesktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGgliaraaiaklkekem 105
                 L +l+HGl+ ++  ++ ++++l +         + +   +  +   ++ i v  e+l +++ ++ +     n  i +vghSlGgl++r+ +a       
  EGE25987.1   6 LTILIHGLHLSPWYMKPLEKKLIN---------LGLSTHRYGYRSLMQPIAVHSENLHQYLTQTHD----VNRPINLVGHSLGGLVIRHFLANYP---- 87 
                 566666666666666666666666.........333344444444456677777777777666544....344578****************444.... PP

      DUF676 106 tlkeaikglepvtfitlasPhLGvlyss 133
                  +       +++  +tl +Ph G+   +
  EGE25987.1  88 -VW------RIHRCVTLGTPHCGSQVAH 108
                 .33......78999*********87665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.3   1.9e-09   2.6e-06       2      96 ..       8     123 ..       7     226 .. 0.65

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.9e-09
                    EEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH..CHHHHHHHCCTT..TTSEEEEEETCHHHHHHH.HHHCC.....EEE CS
  Abhydrolase_6   2 lllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled..ladlaalldelaagggpvvlvGHSlGGalala.aapla...lvvgv 91 
                    +l+HG  ++ s W++ pL ++l      l++ + G+ rs   p ++    l++++ + +++    +p+ lvGHSlGG++  + +a ++   ++++v
     EGE25987.1   8 ILIHG--LHLSPWYMKPLEKKLINLG--LSTHRYGY-RSLMQPIAVHSenLHQYLTQTHDV---NRPINLVGHSLGGLVIRHfLANYPvwrIHRCV 95 
                    79***..77799*9999966666665..79999999.465555555442356666666666...799***************888888*9666668 PP

                    EES-........................ CS
  Abhydrolase_6  92 lldp.......................p 96 
                     l +                        
     EGE25987.1  96 TLGTphcgsqvahyantylkpfvnqsyL 123
                    8888344444444444444333333330 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   5.8e-09     8e-06      82     136 ..      55     108 ..      42     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.8e-09
       PGAP1  82 ly.sssekeptsviliGHSmGGivaraaltlknyikqsvntiltlasPhalpplsf 136
                 +y ++++  ++ + l+GHS+GG+v r    l+ny    ++  +tl++Ph  +++++
  EGE25987.1  55 QYlTQTHDVNRPINLVGHSLGGLVIRHF--LANYPVWRIHRCVTLGTPHCGSQVAH 108
                 554566778889*************875..66777889***********9999865 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     3e-08   4.2e-05      65     107 ..      56     105 ..      24     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3e-08
                    HHHHHCTTSSEE.EEEETHHHHHHHHHHHHH.GGGEEEEEEESE.....C CS
  Abhydrolase_1  65 rildalgddklt.lvGhSmGGmialayaaey.perVkalvllga.....i 107
                    ++ + +++ +++ lvGhS+GG++ ++++a y   r++++v+lg+      
     EGE25987.1  56 YLTQTHDVNRPInLVGHSLGGLVIRHFLANYpVWRIHRCVTLGTphcgsQ 105
                    5566666655555******************999**********444432 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.2e-08   7.2e-05     107     168 ..      52     107 ..      21     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.2e-08
        LCAT 107 kLkelieealklsgkkvvliaHSmGnllvlyflkwveaeaWvdqhikafislgapllGsvka 168
                 +L + + +++++ ++++ l++HS+G+l+++ fl ++    W    i++ + lg+p  Gs  a
  EGE25987.1  52 NLHQYLTQTHDV-NRPINLVGHSLGGLVIRHFLANYPV--W---RIHRCVTLGTPHCGSQVA 107
                 666666666665.689*******************554..4...4*************9755 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.4e-07   0.00089      47     108 ..      38      98 ..       8     133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.4e-07
  Hydrolase_4  47 gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd.kvaglilsa 108
                  g r  ++++  + + l++++++  ++  ++p+ l+GhS+GGl+  ++l++yp  ++++ +  +
   EGE25987.1  38 GYRSLMQPIAVHSENLHQYLTQ--THDVNRPINLVGHSLGGLVIRHFLANYPVwRIHRCVTLG 98 
                  5566666666666677777543..446778**********************87777666555 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0017      94     157 ..      55     115 ..      25     146 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
      DUF915  94 seLkkkYnikk.fnavGhSmGglaltsYleeyaddkslPqlkklvtiggpfngienndedetlaq 157
                 ++L ++  +++ +n+vGhS Ggl +  +l++y   +    +++ vt+g+p  g+++ ++ +t+ +
  EGE25987.1  55 QYLTQTHDVNRpINLVGHSLGGLVIRHFLANYPVWR----IHRCVTLGTPHCGSQVAHYANTYLK 115
                 7889999998769******************98766....8899999999999888877766654 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.2e-06    0.0044      31     110 ..      30     105 ..      13     122 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.2e-06
                 TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT..-EEEEEEEETHHHHHHHHHHHHHHHTT-SS---EEEEEES----B-H CS
    Lipase_3  31 eggkvhsgfleayeeslreqvlkelkrllekyp..eysivvtGHSLGgalAlLaaldlvengenekkkvtvvtfGqPrvgnk 110
                  g + h++ +++++ +      ++l++ l++    +  i ++GHSLGg    L+  ++ +n++   +  ++vt+G+P +g++
  EGE25987.1  30 LGLSTHRYGYRSLM-QPIAVHSENLHQYLTQTHdvNRPINLVGHSLGG----LVIRHFLANYPV-WRIHRCVTLGTPHCGSQ 105
                 56677888888887.66677778888877777746678*********9....666777777766.7889**********986 PP

>> PNKP-ligase_C  PNKP adenylyltransferase domain, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.7e-05     0.023      18      45 ..      68      95 ..      51      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
                   HHHHHHHHHHHHHHHHTT--HHHHHHHH CS
  PNKP-ligase_C 18 AlrEfaLGlealerfvakeplwrvHecv 45
                    l  ++LG   +++f a+ p+wr+H cv
     EGE25987.1 68 NLVGHSLGGLVIRHFLANYPVWRIHRCV 95
                   567799*********************9 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05     0.058      60     117 ..      41      97 ..      32     105 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
  LIDHydrolase  60 sLedQiehkedflkellekaksekdvklilvGHSvGaYialevlkrlsersikkvvlL 117
                   sL + i    + l+++l+ ++++ ++ + lvGHS G  ++ + l +++  +i+++v L
    EGE25987.1  41 SLMQPIAVHSENLHQYLT-QTHDVNRPINLVGHSLGGLVIRHFLANYPVWRIHRCVTL 97 
                   566667888889999998.668999************************99****988 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00013      0.18       3      75 ..       8      81 ..       6      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
     UPF0227  3 lYlHGFdSSPlshkaqllsqfiaedvlaielsvlklkedpqqalkeleklvaelgddn..illvGssLGGyyatr 75
                + +HG + SP   k  l ++ i+     + +  + l +  +   ++l++ + ++ d n  i lvG sLGG++  +
  EGE25987.1  8 ILIHGLHLSPWYMK-PLEKKLINLGLSTHRYGYRSLMQPIAVHSENLHQYLTQTHDVNrpINLVGHSLGGLVIRH 81
                66899999998765.5677888888888899999999999999999******99999999**********97655 PP

>> DUF726  Protein of unknown function (DUF726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00023      0.32     205     238 ..      51      84 ..      38     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00023
      DUF726 205 klLAdallsraqGeRpvtLiGfslGARviyvCLl 238
                 + L + l++ +  +Rp+ L+G+slG  vi + L 
  EGE25987.1  51 ENLHQYLTQTHDVNRPINLVGHSLGGLVIRHFLA 84 
                 5677888888889**************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1756.86
//
Query:       EGE25988.1  [L=358]
Description: outer membrane porin M35 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-33  115.8  29.7    3.2e-33  115.8  29.7    1.4  1  Porin_4    Gram-negative porin
    1.2e-12   47.9  15.4    1.2e-12   47.9  15.4    1.7  2  Porin_1    Gram-negative porin
  ------ inclusion threshold ------
       0.18   11.9  31.5       0.05   13.7  17.1    3.4  2  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> Porin_4  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8  29.7   5.4e-37   3.2e-33       1     310 [.       7     318 ..       5     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 115.8 bits;  conditional E-value: 5.4e-37
     Porin_4   1 AlaalaaaAgaAaAqssVtlyGsidagvayvdgsatg.......ssadgatgfd.sgsrigftgsedldlGlglkasfele....agdngagtsgarqa 87 
                 A+a++a+  +++aAq + t+yG + +++  ++++ t        s +++++g++ ++srigf+gse l+   +  + ++le     + + ++++++r++
  EGE25988.1   7 ATAVAAL--SVSAAQATPTVYGKAFLTIDANNTDTTYnsglvqlSEDTNESGLNsNTSRIGFKGSEALNANTD--VVYQLEykidIDADRGDNFKSRDT 101
                 4444444..44555667************76655442334444499999*****5558**********98755..666666555444477899****** PP

     Porin_4  88 yvglsg.gfGkvtlGrqdgafdeagvdlafesgsladtgtalsgvsgsagfd.srdsnsiiyyspkfgGftagasyafgeddntnglagsvagdsddnd 184
                 y+gl++ ++G++++Gr +++ d++  +   e+ ++ad g++   +      +  r++n+ +y+sp+++G ++ a+yaf+ d+++        g+  ++d
  EGE25988.1 102 YLGLAHkQYGTLLAGRLTTIDDSVDFASMLEGNNVADIGPT---F------NaPRANNAFAYVSPEYNGTQFLAMYAFDSDTDK--------GGLAKDD 183
                 ********************999887767777777777333...2......227899**********************99988........4445899 PP

     Porin_4 185 afglgagyafggvglavaaaysqgdneadadldawglgasvsl.ggfklgasya..daendaaaaa.............adadlygvgasytv.galtv 266
                  fg+ga+y+ g  +++++a+y +  +++      + l++++++ +++++ga y+  +     aa++              + ++  v++   + +++t 
  EGE25988.1 184 QFGVGATYSTG--PINAGATYIHYGDDS-----HIRLSGNYAVsPALTVGALYQisE--FGVAAKNqkasplsegkvgdKKENTLIVSGEMKTaTPWTA 273
                 *********99..*********877776.....699*******9999*******553..33333335688999****8777777778888888899986 PP

     Porin_4 267 gaaygnydd.agandadatsyglgatYnLskrtdlyaeyaytdnd 310
                 +++    ++ ag++++++ ++g+g++Y+++k t+ ++  +y++++
  EGE25988.1 274 YGQATLIKNvAGNDGDESVGVGIGGKYAFNKATTGHVYTGYVNSE 318
                 666666666999**********************87777777665 PP

>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9  15.4     2e-16   1.2e-12       4     322 ..      35     323 ..      33     335 .. 0.79
   2 ?    1.4   0.6     0.028   1.7e+02     134     176 ..     312     358 .]     309     358 .] 0.76

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 2e-16
                 EEEEEEEEEEEEEEEESTTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESSSBTTCTTTCEEEEEEEEEEETTTEEEEEEEEE-TTHHHHCTTTT CS
     Porin_1   4 nkldlygkvtklhyfsdeksedgddtyariGfKGetqindqLtgygqwEyevkvngtegesaqsktrlaFaGLkfgevGsldyGrnygvvydveawtdv 102
                 n++d   +   ++ ++d++ +  +   +riGfKG++ +n +   + q+Ey++  +      ++ k r ++ GL+++++G+l +Gr+  +    +  +d 
  EGE25988.1  35 NNTDTTYNSGLVQLSEDTNESGLNSNTSRIGFKGSEALNANTDVVYQLEYKIDIDADR--GDNFKSRDTYLGLAHKQYGTLLAGRLTTI----DDSVDF 127
                 555555555555666667777778889*************************999888..45899********************8764....345566 PP

                 SSSSSSCTSSCTT.STTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS....SSTTT-BESEEEEEEEEEETT..EEEEEEEEEEEE-CHHC... CS
     Porin_1 103 lpefggdtvaqtd.nfmtkrangvatYrntdFfGlvdglnfalqyqgknedtstnnrnlkksngdgygvslsYeveGfalsvagayarsdrtakqklel 200
                 + +  g++va+++ +f   ran    Y ++++ G     +f + y  +++++     +      d +gv+++Y  +   ++ +++y +++  ++     
  EGE25988.1 128 ASMLEGNNVADIGpTFNAPRANNAFAYVSPEYNG----TQFLAMYAFDSDTD-----KGGLAKDDQFGVGATYSTGP--INAGATYIHYGDDSHI---- 211
                 66666777777763788999999999*****976....68999998885553.....33345679**********95..********99876663.... PP

                 ...TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEEEEEEESEEEEEEEEEEE-BTTSEEEEEEEEEEE.EECETTSTCCEEEEEEEEEEEE CS
     Porin_1 201 kseakllgngkkaevwalglkYdanniylaaaYaetrnatlvgasgianktqnlevvaqyqfdfGlrPsiaYvqsk.gkdlegkkgdndlvkyvdvGat 298
                     +l gn     + ++g+ Y+  +  +aa+    ++a+++++ ++  k +n+ +v        ++P  aY q+   k++ g   d d    v +G +
  EGE25988.1 212 ----RLSGNYAVSPALTVGALYQISEFGVAAK---NQKASPLSEGKVGDKKENTLIVSGEMK--TATPWTAYGQATlIKNVAG--NDGDESVGVGIGGK 299
                 ....566788888999************9998...8889999999**********9987543..49******99862466666..55555778999*** PP

                 EECCSSEEEEEEEEEE-S-TTSSC CS
     Porin_1 299 YyFnKnmsayVdykinlldkdddk 322
                 Y FnK +   V   +   ++ + k
  EGE25988.1 300 YAFNKATTGHVYTGYVNSERKNVK 323
                 ********9998777665555534 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.028
                 CCTSTTEEEEEEEE--B-TS....SSTT....T-BESEEEEEEEEEE CS
     Porin_1 134 fGlvdglnfalqyqgknedtstnnrnlk....ksngdgygvslsYev 176
                  G v++    ++y+g ne++ ++++++k    k+ g g g++l Y++
  EGE25988.1 312 TGYVNSERKNVKYEGSNETHKNAHKDTKfdgyKNSGFGIGAGLEYKF 358
                 67888888889999999998655556556677888889999999975 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   7.7      0.12   7.3e+02       2      89 ..       6     105 ..       5     179 .. 0.61
   2 ?   13.7  17.1   8.4e-06      0.05      17     176 ..     182     354 ..     164     358 .] 0.76

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.12
   OMP_b-brl   2 allllaalsaaaaaassfggfyvggglglskvkv.............dgvgsds.gfgfgvgagyefndnvgvegglsy.sgdkdysgsgktdikinll 85 
                 ++ ++aals++aa+a++ ++ ++ + + ++++++             +++g +s ++ +g+++   +n n  v ++l y  + + + g    ++k++ +
  EGE25988.1   6 LATAVAALSVSAAQATPTVYGKAFLTIDANNTDTtynsglvqlsedtNESGLNSnTSRIGFKGSEALNANTDVVYQLEYkIDIDADRG---DNFKSRDT 101
                 6789999999999999887766555544444443336677777653322233323477888877777777777777776522233233...24444444 PP

   OMP_b-brl  86 svpv 89 
                 ++++
  EGE25988.1 102 YLGL 105
                 4443 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.4e-06
   OMP_b-brl  17 ssfggfyvggglglskvkvdgvgsdsg..fgfgvgagyefndnvgvegglsysgdkdysgs.........gktdikinllsvpvnagyafnlsdsvlpy 104
                 +   +f+vg+ +++  ++++++ + +g  +++ ++++y +++ + v++ ++ s+ + ++++            d k+n+l v++ ++ a +    +  y
  EGE25988.1 182 D--DQFGVGATYSTGPINAGATYIHYGddSHIRLSGNYAVSPALTVGALYQISEFGVAAKNqkasplsegKVGDKKENTLIVSGEMKTATP----WTAY 274
                 3..579************988866665449************9999888887666555555556789998777888999999999999888....7899 PP

   OMP_b-brl 105 ggaGlgytkvevdvsgngasdsdtdfglglgaGveyaladnwslkaeYrytdlks..................dadndlknntfqvgvgy 176
                 g+a l ++     v gn     d d ++g+g+G +ya+++ ++  +   y++ ++                  ++ +++kn++f +g+g 
  EGE25988.1 275 GQATLIKN-----VAGN-----DGDESVGVGIGGKYAFNKATTGHVYTGYVNSERknvkyegsnethknahkdTKFDGYKNSGFGIGAGL 354
                 99999983.....4455.....88899999999999999988888888887777777777777776666555444444999999888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2761.49
//
Query:       EGE25989.1  [L=240]
Description: tRNA-(ms[2]io[6]A)-hydroxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-66  224.8   6.3    1.2e-51  175.7   2.3    2.0  2  MiaE      tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
  ------ inclusion threshold ------
       0.08   12.8   1.0       0.91    9.3   0.9    2.4  2  DUF2202   Uncharacterized protein domain (DUF2202)


Domain annotation for each model (and alignments):
>> MiaE  tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.1   7.9e-18   7.1e-14       3      54 ..      25      74 ..      23      78 .. 0.93
   2 !  175.7   2.3   1.3e-55   1.2e-51      98     240 .]      75     218 ..      74     218 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 7.9e-18
        MiaE  3 lepvikfLkcetpeaWveqareianldvlLlDhlaCelkaaqtallllrkYa 54
                ++ +++fL c t+e W++ a   ++l++lL Dh +Ce kaa+ta++l+++Y 
  EGE25989.1 25 ISHIHEFLGCRTSERWLNLA--CEHLPLLLQDHANCEKKAAGTAMNLIFRYE 74
                67899***************..99***************************6 PP

  == domain 2  score: 175.7 bits;  conditional E-value: 1.3e-55
        MiaE  98 sakdlvdklvrlikeelehfeqvlelleaRnielakisasrYakglkaavrthepqrllDkLivgayieaRsceRlakLapyl.deelakfyvsLlrse 195
                 +++ l ++l +l++ee+ h+eqvl l+++Rni+   ++a+rYakgl+++ rt ep  ++D Li+ga+ieaRsceR+++L++ + de la++y+ Ll+se
  EGE25989.1  75 FHRTLQERLAQLVREEMLHYEQVLSLMKERNIDWYYLPAGRYAKGLLKHKRTYEPAAMVDVLIIGAFIEARSCERFGALSEVIdDEKLARYYKYLLKSE 173
                 6788999****************************************************************************7788************ PP

        MiaE 196 aRhyqdYlkLaeqisdedvserveylaeveaelisspdeefrfhs 240
                 +Rhy+dYl La  i+d+ ++erv+ ++  e eli+spd+e rfhs
  EGE25989.1 174 SRHYEDYLMLARSITDDSIDERVAFFRDIECELIQSPDDELRFHS 218
                 ********************************************9 PP

>> DUF2202  Uncharacterized protein domain (DUF2202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.28   2.5e+03      32      59 ..      53      80 ..      50      84 .. 0.81
   2 ?    9.3   0.9    0.0001      0.91      31     135 ..      83     181 ..      59     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.28
     DUF2202 32 lniakseqthtdavksllekYeledpvk 59
                ++ a+ e++   +  +l+ +Ye + + +
  EGE25989.1 53 QDHANCEKKAAGTAMNLIFRYEFHRTLQ 80
                6778999999999999999999877665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0001
     DUF2202  31 flniakseqthtdavksllekYeledpvkederGkfedeelqelYnkLvekgsksledaLkvgatiedldiaDlekalketdnkdikevYenllkGsrn 129
                   ++++ e  h ++v sl++  +++   +    G + +  l+    +        ++d L++ga ie  +   +  ++++ d++ + + Y+ llk   +
  EGE25989.1  83 LAQLVREEMLHYEQVLSLMKERNIDWYYLPA--GRYAKGLLK----HKRTYEPAAMVDVLIIGAFIEARSCERFGALSEVIDDEKLARYYKYLLKSESR 175
                 5677788888888888888888877665555..555544333....22333455678999999999999999999999999999999999999999999 PP

     DUF2202 130 hlRsfv 135
                 h   ++
  EGE25989.1 176 HYEDYL 181
                 987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2036.61
//
Query:       EGE25990.1  [L=489]
Description: YjeF-related protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-44  152.4   3.9    1.9e-44  152.0   3.9    1.1  1  Carb_kinase   Carbohydrate kinase
    7.5e-28   97.5   0.1    1.8e-26   93.1   0.0    2.3  2  YjeF_N        YjeF-related protein N-terminus
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.038   13.4   0.0    1.8  2  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   3.9   3.2e-48   1.9e-44       1     230 [.     238     465 ..     238     478 .. 0.90

  Alignments for each domain:
  == domain 1  score: 152.0 bits;  conditional E-value: 3.2e-48
                  EEEEE-BTTCHHHHHHHHHHHHCTT-SEEEEEESSTTTCCCCTTTTTCEECCTTHTTTS...--SSS-SEEEE-TT-SSSHCHHHHCHHHC....CCC CS
  Carb_kinase   1 vlvigGsedytGAallaalaalrlgaglvsvateseaiavlksylpevivhplledeqakileklerldavviGpGLgrdekikklleevl....ekd 94 
                  v+vigGs  + GAal++a+aa+++gag v+v+t++++++++ s++p+++  ++++ +q+    +l  + a+  G+GLgrd+++k ++++ l    +++
   EGE25990.1 238 VMVIGGSALMGGAALMSAEAAIQVGAGRVTVMTHPNHHTAIISKSPNLMLGHIDKIDQT----QLTEMTAICFGMGLGRDDWAKSIFKKWLailmTHH 331
                  68****************************************************65555....7889***************9997666541111688 PP

                  S-EEEEGGGGGSGGGG...TTTTSSEEEE--HHHHHHHCTTTCH.HCCSHHHHHHHHHHHHTTEEEEESTTSEEEECTTEEEEE----GGG-STTHHH CS
  Carb_kinase  95 eplviDAdgLnllaqknelserkaeviLTPhkkEfkrLlkaivk.keddrlelarelaqklnavvllkgekdvivspegevlinstgssalakGGsGD 191
                   p+v+DAd+L++la++   s+   + i TPh  E  rLl+ + +  e dr+ +  +l++++++  +lkg++ + ++  g+++i+  g++++a++G+GD
   EGE25990.1 332 MPIVLDADALWHLANQP-PSRLPDHCIGTPHHAEAGRLLGISATqVEADRMAAIIQLQNHYGGQWILKGANSLSIDTLGNISICTLGNAGMATAGMGD 428
                  99*************86.788899***************988776999************************************************** PP

                  HHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHCCCT- CS
  Carb_kinase 192 vLaGligalLaqneasyeaaiaaawlhgaasdeaaekkg 230
                  vL+G++++lLaq ++   a i a  lh++++d ++++  
   EGE25990.1 429 VLSGMLAGLLAQDATLPFAQIIA--LHARSGDILSQESI 465
                  **************888888876..78888887777654 PP

>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0     3e-30   1.8e-26       4     171 .]      31     182 ..      28     182 .. 0.94
   2 ?    1.9   0.2      0.03   1.8e+02      28      62 ..     237     271 ..     224     287 .. 0.78

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 3e-30
      YjeF_N   4 LmenagravaevlrallgnspaekkvlvlvGsgnnGgdglaaArhLaqegakVtvllleeeekldedaeralellkkaggkvveekpeedleeklsapv 102
                 Lm++a+  ++++l+a+l    ++ ++++++G gnnGgdg+ ++ +L +e ++V +  +   +  ++da +a++ + +a   +++ +p e         +
  EGE25990.1  31 LMQQAALMMSNTLKAHL---KPDSSICIWCGVGNNGGDGYLLGVYL-SEYYHVSI--YPALPAKSDDAVWAYQDVIAADLPILQ-SPIE---------A 113
                 9****************...9*************************.999*****..56667899******************6.3333.........6 PP

      YjeF_N 103 dlviDAllGiglrgelreelaeliewlnsseapvlavDiPSGldadtGavsgtavkadvtvtfgapkrg 171
                 d+ iDAl+G gl  +l++   ++ie+ n+ + + +a+DiPSGl++dtG +++ a + d+t+++ a k g
  EGE25990.1 114 DIHIDALFGDGLTHPLDDIWCTIIEQYNAIKGTKIAIDIPSGLHPDTGIPLPCATQVDMTLCLMAYKAG 182
                 899**************************************************************9976 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.03
      YjeF_N  28 kvlvlvGsgnnGgdglaaArhLaqegak.Vtvllle 62 
                 +v+v+ Gs   Gg +l+ A    q ga  Vtv++ +
  EGE25990.1 237 SVMVIGGSALMGGAALMSAEAAIQVGAGrVTVMT-H 271
                 5788888889999999999999888887788843.3 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.29   1.8e+03     132     166 ..     211     245 ..     201     273 .. 0.74
   2 ?   13.4   0.0   6.4e-06     0.038     118     220 ..     353     447 ..     343     453 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.29
                   HHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS CS
  Phos_pyr_kin 132 aLlgekikteedmkeaakkllklgakaVlikGghl 166
                   a++++++ ++ +  +  ++l+k ga +V++ Gg +
    EGE25990.1 211 AIINNRLPSLPNRTRHSNHLHKGGAGSVMVIGGSA 245
                   55666666777778888999999999999999975 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 6.4e-06
                   GG-SEEE-BHHHHHHHHT---SSHH.HHHHHHHHHHH.TT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHHHH CS
  Phos_pyr_kin 118 platvitPNlpEaeaLlgekiktee.dmkeaakkllk.lgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaaela 212
                   p   + tP ++Ea +Llg +++++e d  +a  +l++ +g +++l kG +       ++d+l +  ++ +l +  ++   t G G++ls ++a+ la
    EGE25990.1 353 PDHCIGTPHHAEAGRLLGISATQVEaDRMAAIIQLQNhYGGQWIL-KGANS-----LSIDTLGNI-SICTLGNAGMA---TAGMGDVLSGMLAGLLA 439
                   556678************666544437777777888879999999.99973.....445888543.35555555555...9**************** PP

                   CTSSHHHH CS
  Phos_pyr_kin 213 kgesleeA 220
                   +  +l+ A
    EGE25990.1 440 QDATLPFA 447
                   *9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 4045.49
//
Query:       EGE25991.1  [L=361]
Description: tRNA pseudouridine synthase D [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-56  190.9   0.0    4.5e-35  121.3   0.0    2.0  2  TruD      tRNA pseudouridine synthase D (TruD)


Domain annotation for each model (and alignments):
>> TruD  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.3   0.0   2.5e-39   4.5e-35      17     171 ..      18     175 ..      11     181 .. 0.85
   2 !   67.6   0.0     5e-23     9e-19     262     413 ..     209     349 ..     204     352 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.3 bits;  conditional E-value: 2.5e-39
        TruD  17 rlrespeDFiVeEieefsgeeeadegeylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeeleal...........e 104
                  ++++p+DFiV+Ei +++   ++ +ge+l+l+++k n +t  +v+ la+ +g+  ++vg++G+KD++A+T Q++sir  ++ ++++            +
  EGE25991.1  18 DFKSTPNDFIVTEILDIE---HSGNGEHLWLHITKINLNTTYVVKLLANWAGVPMRDVGYSGLKDRHAITHQWFSIRLPTK-AIPKTslesfakaylnD 112
                 6899**********6664...4589**************************************************875443.44444334346554433 PP

        TruD 105 ikdvelevvgrarrklrlGdLaGNkFeirvrdvaeeeeaakraeeileeleekggvPNyfGvQRFGs 171
                  ++  l+ ++ ++rkl+ G+++ N+F+ir+r +   + ++++++e+le+++  ggvPNyfG QRFG 
  EGE25991.1 113 DESFILNHLIWHSRKLNRGTHKYNHFAIRLRHL---NGDINTIDETLERIKS-GGVPNYFGEQRFGI 175
                 37788999************************6...345899*********8.66***********6 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 5e-23
        TruD 262 lFvhAyqSylFNrvlseRlerglpldepveGDvvifaeerlpdtdrlqlvteknveevkrliergrafvtaplvGtetelaegevgeierevleeegle 360
                 l ++A++S lFN +l +R+++g ++++++ GDv   +          +++++   ++vk  i++ ++++tapl+G   +   g+v+ + +++l++ + +
  EGE25991.1 209 LLISAARSALFNAMLGKRVADG-TWNRALLGDVFNLEGTG-------SIFQNMPTDDVKTRIKQCDIHPTAPLIGIGDRRDCGSVRMLYDTLLNH-NHN 298
                 789*******************.9*********9998666.......999999************************************999999.344 PP

        TruD 361 ledFklpklpelsskGtrRaillrvedlelsaeedeltleFsLpkGsYATvvl 413
                 ++ +  ++l ++++k t+R+++l v dl+ + ++del leF LpkG +ATvv+
  EGE25991.1 299 QTLY--QGLIKIGAKLTYRPLRLMVYDLTWNRSGDELYLEFRLPKGAFATVVI 349
                 4445..56779****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3064.23
//
Query:       EGE25992.1  [L=97]
Description: putative polyhydroxyalkanoic acid system protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-22   79.8   0.0    1.5e-22   79.7   0.0    1.0  1  PHA_gran_rgn  Putative polyhydroxyalkanoic acid system protei
  ------ inclusion threshold ------
       0.02   14.7   0.1      0.027   14.3   0.1    1.2  1  VanY          D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> PHA_gran_rgn  Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   1.7e-26   1.5e-22       1      86 [.       4      93 ..       4      94 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 1.7e-26
  PHA_gran_rgn  1 IeiereHdLgleeAreraeelaekleeefglelewe....gdtlkfkrsgvdGqlevepdkvrleakLglllkafkgkieseiekkLdkl 86
                  I +er+H L++e Ar++a+++++++e++fgl++++     +d+++++++gvd+q ++++dk++++akLgl++k++kg i s i++ Ld++
    EGE25992.1  4 IYFERQHGLDFESARTKAQAWLQEAENQFGLNINYIkgnnQDNASIHKAGVDAQATLTADKITFQAKLGLFAKPLKGVISSGIKEGLDNY 93
                  779********************************99999************************************************87 PP

>> VanY  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1     3e-06     0.027      83     118 ..      10      45 ..       2      57 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-06
                 .--SCGGGHCHHHHHHHHHGGGGTEEESS-TTGHHH CS
        VanY  83 tkleesfeetkafkwlqknaakygFvlrypkgkeqe 118
                 + l+ + ++tka +wlq+  +++g+ + y kg++q+
  EGE25992.1  10 HGLDFESARTKAQAWLQEAENQFGLNINYIKGNNQD 45 
                 357778899*********************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 752.30
//
Query:       EGE25993.1  [L=191]
Description: deoxycytidine triphosphate deaminase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-09   36.6   0.0    2.8e-08   33.5   0.0    1.9  2  dUTPase   dUTPase


Domain annotation for each model (and alignments):
>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.024   4.3e+02      14      32 ..      44      62 ..      36      67 .. 0.83
   2 !   33.5   0.0   1.6e-12   2.8e-08      22     124 ..      81     185 ..      74     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.024
                SSEEEE-SSSEEEETTEEE CS
     dUTPase 14 AgyDlsaakdltvkpgetv 32
                 gyD++ a+++ v  + + 
  EGE25993.1 44 YGYDVRCANEFKVFTNVHS 62
                59***********997775 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 1.6e-12
                 SSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEEEEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBEC..GEEEEESSTTTE CS
     dUTPase  22 kdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvpgvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifarilt..aeleevetlkat 118
                 ++++++p++  l  t  ++ +p+++  + l++S  a+ g+iv ++ +   ++G+v + + n t+ + +i +g+ +Aq++f + ++       +++   +
  EGE25993.1  81 DECIIPPNSFALARTVEYFRIPRDVLTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTNLPARIYAGEGVAQMLFFQSDAddVCQISYKDRGGK 179
                 789*****************************************99**********************************9888744222333334444 PP

                 SSBTTX CS
     dUTPase 119 ergegg 124
                 ++g+ g
  EGE25993.1 180 YQGQTG 185
                 555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1515.66
//
Query:       EGE25994.1  [L=145]
Description: cyclic nucleotide-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-15   54.6   0.0    1.4e-14   54.1   0.0    1.3  1  DUF294    Putative nucleotidyltransferase DUF294


Domain annotation for each model (and alignments):
>> DUF294  Putative nucleotidyltransferase DUF294
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   7.5e-19   1.4e-14      86     138 .]       3      55 ..       1      55 [. 0.95

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 7.5e-19
      DUF294  86 yfaelaervneaLaalGyplCpggimasnpewrkslseWkeqfrkwirepepe 138
                  ++ +aer++  La++Gyp+C g+im++np w++s+se+k+++ +w ++p+p+
  EGE25994.1   3 MMQPYAERFSGILAEFGYPPCLGKIMVNNPSWCQSVSEFKQTVGSWYKNPTPD 55 
                 57889*********************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1232.28
//
Query:       EGE25995.1  [L=99]
Description: putative signal-transduction protein containing cAMP-binding and CBS domains [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-23   82.0   3.8    3.8e-23   81.9   3.8    1.0  1  DUF294_C       Putative nucleotidyltransferase substrate bind
  ------ inclusion threshold ------
      0.022   14.7   0.5        0.1   12.6   0.2    1.9  2  hnRNP_Q_AcD    Heterogeneous nuclear ribonucleoprotein Q acid
      0.041   14.0   3.2      0.084   13.0   3.2    1.4  1  GlnD_UR_UTase  GlnD PII-uridylyltransferase
      0.088   13.1   0.2         13    6.2   0.0    2.2  2  HBS1_N         HBS1 N-terminus


Domain annotation for each model (and alignments):
>> DUF294_C  Putative nucleotidyltransferase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   3.8   8.5e-27   3.8e-23      53     145 .]       1      94 [.       1      94 [. 0.97

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 8.5e-27
    DUF294_C  53 lALeagieatnTleRlkalaeagvlsaelaedlleayefllrlrlrhqleaieagee.pdnyvdpeeLsklerdlLkealkvvkrlqellklrf 145
                 +AL+a+i++tnT+eR+ +l++ g ++++l +d+ ea+++l++ rl+++l a+++++e + n++d+e+Ls+lerdlLk+al+vv++++  ++++f
  EGE25995.1   1 MALKAKISKTNTFERIARLSQMGLIEQQLSQDVSEALAYLMNTRLKNELLALKHNQElAPNHIDTENLSTLERDLLKDALQVVRQFKHHVSSQF 94 
                 69**************************************************88888689******************************9987 PP

>> hnRNP_Q_AcD  Heterogeneous nuclear ribonucleoprotein Q acidic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.059   2.6e+02       1      17 [.      28      44 ..      28      48 .. 0.86
   2 ?   12.6   0.2   2.3e-05       0.1       3      49 ..      42      88 ..      40      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.059
  hnRNP_Q_AcD  1 gLkeaVaekLdelfrsg 17
                 +L+++V e+L  l++++
   EGE25995.1 28 QLSQDVSEALAYLMNTR 44
                 799*******9999876 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.3e-05
  hnRNP_Q_AcD  3 keaVaekLdelfrsgkltasdlDeraleaLkslpeegAlaVlkqfke 49
                 + + +++L +l  +  l+++ +D   l+ L+    ++Al+V+ qfk 
   EGE25995.1 42 NTRLKNELLALKHNQELAPNHIDTENLSTLERDLLKDALQVVRQFKH 88
                 5667889999999*******************99***********96 PP

>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.2   1.9e-05     0.084      53     117 ..       7      71 ..       3      96 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
  GlnD_UR_UTase  53 lrerstlealeelvergllteeeakelreayrflrrlehrLqlladrqthrLpfdeeeqrrlaea 117
                    + +++t e +++l ++gl++++  ++++ea ++l++ +    lla +++++L  ++ + ++l + 
     EGE25995.1   7 ISKTNTFERIARLSQMGLIEQQLSQDVSEALAYLMNTRLKNELLALKHNQELAPNHIDTENLSTL 71 
                    567899**********************************************9776666555544 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0029        13      60      74 ..      32      46 ..      30      49 .. 0.89
   2 ?    5.1   0.0    0.0063        28      14      34 ..      65      85 ..      52      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0029
      HBS1_N 60 Dvekaldyllnkfkk 74
                Dv++al+yl+n++ k
  EGE25995.1 32 DVSEALAYLMNTRLK 46
                9**********9866 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0063
      HBS1_N 14 eeeLsdedqarLrscldevre 34
                 e+Ls  +++ L+++l+ vr+
  EGE25995.1 65 TENLSTLERDLLKDALQVVRQ 85
                349****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 757.91
//
Query:       EGE25996.1  [L=120]
Description: DNA polymerase III subunit epsilon [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-13   51.0   0.0    3.2e-13   50.6   0.0    1.1  1  RNase_T         Exonuclease
  ------ inclusion threshold ------
      0.034   14.1   0.0      0.048   13.6   0.0    1.3  1  DUF5051         3' exoribonuclease, RNase T-like
       0.16   11.7   0.0        0.2   11.4   0.0    1.3  1  DNA_pol_A_exo1  3'-5' exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   5.3e-17   3.2e-13       1      89 [.      31     115 ..      31     118 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 5.3e-17
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCE CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallva 89 
                 v +D+Ett+ld     +ii+i+a++i+g++  + etf++++kp+ +  +++  + ++g +++ l +  + + ++e+f ++++ ++ lv+
  EGE25996.1  31 VSFDCETTSLDI-SEAQIISIGAVKIRGNRILTSETFEILIKPEGM--IQATNVTIHGLRPKGLSGGVKVDFAIEQFLQFVG-GRPLVG 115
                 779*********.8********************************..*********************************9.777776 PP

>> DUF5051  3' exoribonuclease, RNase T-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.1e-06     0.048       4      40 ..      32      74 ..      29      89 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.1e-06
     DUF5051  4 miDiEtlgne.etaelvsIGaVff....petG...eFyaeidles 40
                  D Et++ + ++a+++sIGaV +    +      +F+  i++e 
  EGE25996.1 32 SFDCETTSLDiSEAQIISIGAVKIrgnrI--LtseTFEILIKPEG 74
                579****999************8865443..04579998888865 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.3e-05       0.2      21      44 ..      29      50 ..       3      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.3e-05
                    SEEEEEEEEE-SSSTTSSEEEEEE CS
  DNA_pol_A_exo1 21 kvvavDtEttsldlisatlvlili 44
                    + v++D+Ettsld+  +  ++i+i
      EGE25996.1 29 ELVSFDCETTSLDI--SEAQIISI 50
                    38************..66666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 961.84
//
Query:       EGE25997.1  [L=71]
Description: DNA polymerase III subunit epsilon [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 630.94
//
Query:       EGE25998.1  [L=238]
Description: LrgB family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-60  203.0  17.8    4.9e-60  202.7  17.8    1.0  1  LrgB      LrgB-like family


Domain annotation for each model (and alignments):
>> LrgB  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.7  17.8   2.7e-64   4.9e-60       3     213 ..      24     234 ..      23     235 .. 0.99

  Alignments for each domain:
  == domain 1  score: 202.7 bits;  conditional E-value: 2.7e-64
        LrgB   3 laYllakalykklkkpllnPvlvaivliillllllgisyetYkegakllsllLgpatVaLAvpLYkqrellkknllaillgllvgslvsllsavllakl 101
                  ++ l+ + + ++++pl+nP lv+++++il+l +++i+ +++++++++++++L+p++V+LAvpLY q+++++ ++l+il++ +v+slv+++s v+++++
  EGE25998.1  24 GVFELTIWARTRFNQPLINPTLVTTIVVILILKFANIKWQAFEQASSYITFWLQPVVVCLAVPLYIQWQKIRVQWLPILVSQFVASLVGIVSGVWIVRA 122
                 689999********************************************************************************************* PP

        LrgB 102 lglseelllsllpkSvTtpiAmevseelgGipsltavlviltGilGallgelllkllrikdpvarGlalGtashaiGtakalelgeeagafsslamvla 200
                 lg s + +++ ++kSvT+piA+ev+++lgG+  +ta+ v+++G++G ++g ++l   +++ p+  Gl+lG+asha+Gt++ ++lg +  a+++l+++l+
  EGE25998.1 123 LGGSYDSMIATAAKSVTMPIAIEVTQALGGVIGITAATVLIAGVVGQIFGVWILYKSGMRLPMGMGLSLGSASHALGTVRSMQLGGRYVAYATLGLILN 221
                 *************************************************************************************************** PP

        LrgB 201 Giltallaplllk 213
                 Gi+ta+lap+l++
  EGE25998.1 222 GIMTAFLAPVLVP 234
                 **********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       909  (0.0507); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1833.27
//
Query:       EGE25999.1  [L=125]
Description: LrgA family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-23   80.4  10.5    8.7e-23   80.1  10.5    1.1  1  LrgA           LrgA family
  ------ inclusion threshold ------
      0.027   14.0   6.3      0.032   13.8   6.3    1.2  1  LrgB           LrgB-like family
      0.043   13.5   1.6       0.12   12.0   0.3    2.0  2  SLATT_4        SMODS and SLOG-associating 2TM effector domain
        2.9    7.7  14.2        3.5    7.5  14.2    1.1  1  7TMR-DISM_7TM  7TM diverse intracellular signalling


Domain annotation for each model (and alignments):
>> LrgA  LrgA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1  10.5   1.9e-26   8.7e-23       2      91 ..      14     103 ..      13     106 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.9e-26
        LrgA   2 llGellsrllplpiPgsviGlllLlllLltkivklekveeaadfllkhlallFvPagvgvmeyldllkaellailvalvvstllvlvvtg 91 
                 +lG+l++ l++l +P sv+Gl+lL+l+L+ +ivkl+++e+ a++++++l ll vPa++++m+yld+++++++ +++ + vst+lvl++++
  EGE25999.1  14 FLGQLIVGLFDLLLPPSVVGLILLFLALQVGIVKLATIEKLAKVFMDYLVLLVVPACISIMQYLDIIRDDFWVLIIGVSVSTILVLLTSA 103
                 89************************************************************************************9876 PP

>> LrgB  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   6.3     7e-06     0.032      18     102 ..      25     109 ..       6     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7e-06
        LrgB  18 pllnPvlvaivliillllllgisyetYkegakllsllLgpatVaLAvpLYkqrellkknllaillgllvgslvsllsavllakll 102
                  ll P +v+ +l+ l+l +  ++++t ++ ak+++  L   +V   + + +++++++  ++ +++g+ v++++ ll++++   +l
  EGE25999.1  25 LLLPPSVVGLILLFLALQVGIVKLATIEKLAKVFMDYLVLLVVPACISIMQYLDIIRDDFWVLIIGVSVSTILVLLTSAGSYTWL 109
                 6899*****************************************************************9999888877765555 PP

>> SLATT_4  SMODS and SLOG-associating 2TM effector domain family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.032   1.4e+02      36      70 ..      41      75 ..      35      80 .. 0.89
   2 ?   12.0   0.3   2.7e-05      0.12      42      94 ..      69     121 ..      61     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.032
     SLATT_4 36 lqIilsaittggllvllfgdekvakivgailslil 70
                lq+ +  + t   l+++f d  v+++v a++s+++
  EGE25999.1 41 LQVGIVKLATIEKLAKVFMDYLVLLVVPACISIMQ 75
                6888899999999******************9986 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.7e-05
     SLATT_4  42 aittggllvllfgdekvakivgailslillvlnlytkdfdlgeeaqkhraaAn 94 
                 a  +      ++ d+ +++i+g+ +s+il++l++    + l +  ++h ++ +
  EGE25999.1  69 ACISIMQYLDIIRDDFWVLIIGVSVSTILVLLTSAGSYTWLRKLQKSHAQTTK 121
                 4445555567899*********************9999999999999999875 PP

>> 7TMR-DISM_7TM  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  14.2   0.00077       3.5      98     199 ..       4     101 ..       1     106 [. 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00077
  7TMR-DISM_7TM  98 klllllavllslllll.lpllpyteslslaqllallvillllligikawrkgnkparyfliawlllligvlidilsllgllpsnffte.yllqigv 191
                    k   ++++++++l+l  l++ +++  l+ + ++ l++++l+l +gi+ +   +k a+ f+  ++ll++ ++i i+++l+++   f+    +++++ 
     EGE25999.1   4 K---AIMIVFGCLFLGqLIVGLFDLLLPPS-VVGLILLFLALQVGIVKLATIEKLAKVFMDYLVLLVVPACISIMQYLDIIRDDFWVLiIGVSVST 95 
                    3...44444444444414455778887776.8899999999999999999***********9**********************999766666644 PP

  7TMR-DISM_7TM 192 llevllls 199
                    +  vll +
     EGE25999.1  96 I-LVLL-T 101
                    4.3444.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 932.79
//
Query:       EGE26000.1  [L=418]
Description: 2-octaprenyl-6-methoxyphenol hydroxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-37  128.8   1.0    4.5e-37  128.1   1.0    1.3  1  FAD_binding_3   FAD binding domain
    2.1e-05   23.7   0.3      0.051   12.6   0.0    3.0  3  Lycopene_cycl   Lycopene cyclase protein
    2.9e-05   23.3   0.0      0.028   13.5   0.0    2.2  2  SE              Squalene epoxidase
    0.00011   22.4   0.1    0.00029   21.0   0.1    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00012   22.6   0.0    0.00037   21.0   0.0    1.9  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00024   20.4   0.1     0.0018   17.5   0.0    1.9  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00029   19.8   0.0       0.64    8.8   0.0    2.3  2  Trp_halogenase  Tryptophan halogenase
    0.00042   20.0   1.4    0.00065   19.4   0.3    1.8  2  DAO             FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.027   14.9   0.0      0.054   13.9   0.0    1.7  1  NAD_binding_7   Putative NAD(P)-binding
      0.049   12.9   0.0       0.43    9.8   0.0    2.0  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.055   12.5   0.0      0.088   11.9   0.0    1.3  1  GIDA            Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   1.0   2.8e-40   4.5e-37       4     336 ..       8     355 ..       5     373 .. 0.77

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 2.8e-40
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS............S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEE CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp............radglnqrtmellrqlGledrilaegapnelmgealynelsdtpkar 87 
                    VlIVG+G +Gl+ allL+ +G++++lve ++  + +p            r   l+ rt+++++++Gl++ +++++   + +++   ++       +
     EGE26000.1   8 VLIVGGGHVGLSFALLLAHHGIKSTLVEHHRYPTIEPdedntrtqyldsRNTALSRRTVQIYQEIGLWAYLQSHACHIDQVNISELGS-----FGH 98 
                    9*****************************98888877777866677778889999*******************7766555554444.....455 PP

                    EEHH..CHHCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEE CS
  FAD_binding_3  88 adle..lesspervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegee 180
                    a l+  +e   +  +v+    l r L+ + +  + ++++ ++ v  + qde + + +v+   tg+++t++a  +v++DG +S+vr++l i +  ++
     EGE26000.1  99 ATLNkdEEGVESFGQVMENAHLGRQLLLAVKDSPlINLYDGASVIDIAQDEAHASITVKFD-TGQIKTLTAPLVVACDGQHSAVRQRLNIGVDIHD 193
                    55552244555556666777899999999999**9******************88888887.7***********************9988866666 PP

                    EEEEEEEEEEEEEC-SCCCTTC.........CEEEEECCTTEE.............EEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHH CS
  FAD_binding_3 181 tvyeagvldvlfdadlsdivep.........lvlilsaesrgv.............mviPlentlerfyvqvearaekeersekfteeevkarlre 254
                       ++g+++v+ +++     ++                                    + +      +  +v + ++ ee +   ++e + + l++
     EGE26000.1 194 YE-QVGIVGVVQTDKAH---KHtaierfseaG----------PlavlpltdgmgdgGTGQTAG---YRRSVVFICPKGEEGRYLSDDEYYLQTLQT 272
                    43.55666666555333...331111233441..........222334444332223333333...333344444555677888899999****** PP

                    HHTTSSCEE.EEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHH CS
  FAD_binding_3 255 ivgektldv.eieevsawtvaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYee 336
                     +g+++ +     +  ++++ + +a +  +gr  ++G AaH+  P++GqG N+ ++Da++La  La+++  e+++  L +Y++
     EGE26000.1 273 VFGTAAGRFvATGRRGVYPLTKVLAHRQVSGRFVIMGNAAHTLHPVAGQGFNLCLRDAYTLANMLAKAVAKEGSQVDLGQYDR 355
                    ******99868888899**************************************************9999998877777764 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0     0.003         5       2      32 ..       8      36 ..       7      46 .. 0.90
   2 ?    1.3   0.0     0.083   1.4e+02     104     146 ..     137     182 ..     113     193 .. 0.82
   3 !   12.6   0.0   3.1e-05     0.051     239     315 ..     286     364 ..     272     376 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.003
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvliea 32
                   v+++G+G  gls A  l  a+ g+k +l+e 
     EGE26000.1  8 VLIVGGGHVGLSFALLL--AHHGIKSTLVEH 36
                   79***************..999***999985 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.083
  Lycopene_cycl 104 lleakvesveeeea.geslvvleggr..kirarlvvdarglaslkk 146
                    +  a v  ++++ea +  +v  + g+  ++ a+lvv   g  s+ +
     EGE26000.1 137 YDGASVIDIAQDEAhASITVKFDTGQikTLTAPLVVACDGQHSAVR 182
                    5568899999999988889999999899*********999776663 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 3.1e-05
  Lycopene_cycl 239 EqgviPvtlggslprleqkvlaiGaaaglvhPaTGYsvarslaeapllasaiaaalres..slsarawatlwprerkrq 315
                     +gv P+t     +++  + + +G aa   hP  G  +   l+ a +la+ +a+a +++  + +  + ++l + e +rq
     EGE26000.1 286 RRGVYPLTKVLAHRQVSGRFVIMGNAAHTLHPVAGQGFNLCLRDAYTLANMLAKAVAKEgsQVDLGQYDRLIRYENARQ 364
                    5799999999999999999**********************************99998766444444444444444444 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00096       1.6       2      33 ..     168     199 ..     167     216 .. 0.71
   2 !   13.5   0.0   1.7e-05     0.028     127     167 ..     300     340 ..     282     378 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00096
          SE   2 AkltvvcDGifsklRkelsdnkvevtssfvGl 33 
                 A+l v cDG +s +R+ l+  +      +vG+
  EGE26000.1 168 APLVVACDGQHSAVRQRLNIGVDIHDYEQVGI 199
                 9****************985443333335555 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.7e-05
          SE 127 nekkGlillGDalnmRHPltggGmtvalnDivllskllkpl 167
                 + +  ++++G+a    HP+ g G   +l+D++ l+++l + 
  EGE26000.1 300 QVSGRFVIMGNAAHTLHPVAGQGFNLCLRDAYTLANMLAKA 340
                 44445899***************************999765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.8e-07   0.00029       1      30 [.      10      39 ..      10      42 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.8e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   IvG+G  Gl++A lLa +g++ +l+e++++
     EGE26000.1 10 IVGGGHVGLSFALLLAHHGIKSTLVEHHRY 39
                   9*************************9986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.3e-07   0.00037       2      45 ..       8      53 ..       7      70 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.3e-07
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS..TTSSHHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll..rllDeeaski 45
                v++vGgG +gl +A  la++g k t+ve +  +   + +D++  ++
  EGE26000.1  8 VLIVGGGHVGLSFALLLAHHGIKSTLVEHHRYPTiePDEDNTRTQY 53
                89**************************998888666666665555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06    0.0018       3      57 ..       8      61 ..       5     105 .. 0.73
   2 ?    0.2   0.0      0.22   3.6e+02     198     252 ..     134     191 ..     108     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.1e-06
                 EEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  3 vvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias 57
                 v+++GgG+ Gl++al la++g+k tlv +    ++  +   ++ +++ + +++a+
   EGE26000.1  8 VLIVGGGHVGLSFALLLAHHGIKSTLV-EHHRYPTIEPDEDNTRTQYLDSRNTAL 61
                 899999999999999999999999999.555566666666666666666666555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.22
                  EEEEESCEEEEEEETTE..EEEEEETTSCE..EEESEEEE-S-EEES-HHCSHCCT-EE CS
                  xxxxxxxxxxxxxxxxx..xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 198 vevklgtsvkeidgnge..klevvledgee..idadlvvvavGvrpstelleeklglel 252
                  ++++ g+sv +i +++   +++v+ ++g+   + a lvv + G     + +  ++g+ +
   EGE26000.1 134 INLYDGASVIDIAQDEAhaSITVKFDTGQIktLTAPLVVACDGQHSAVRQR-LNIGVDI 191
                  667778888889988887766677777776669999999999988776665.6666655 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00039      0.64       2      41 ..       8      44 ..       7      53 .. 0.91
   2 !    8.7   0.0   0.00043       0.7     311     373 ..     298     363 ..     269     370 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00039
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlveseeigtvgv 41
                    ++ivGGG  G   A +la+++   ++ tlve    +t++ 
      EGE26000.1  8 VLIVGGGHVGLSFALLLAHHG---IKSTLVEHHRYPTIEP 44
                    89******************9...999******9999976 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00043
                     S-SEETTEEE-CCCTEE--CCCS-HHHHHHHHHHHHHHT--BTT--...HHHHHHHHHHHHHHHHH CS
  Trp_halogenase 311 kqawvknvvalGlasgfvePlestsihliqaalrrLlallpdksde...paaiaefnrevareler 373
                     ++  +  +v +G+a+  + P+ +++  l  +++++L+++l++ + +   ++++ +++r +++e  r
      EGE26000.1 298 HRQVSGRFVIMGNAAHTLHPVAGQGFNLCLRDAYTLANMLAKAVAKegsQVDLGQYDRLIRYENAR 363
                     56667789*********************************98765444889999**999998766 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3     4e-07   0.00065       2      33 ..       8      41 ..       7     130 .. 0.78
   2 ?   -0.5   0.1      0.43   7.1e+02     196     211 ..     171     189 ..     107     344 .. 0.47

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4e-07
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                v+i+GGG +Gls A+ La +g   tl+e ++ + 
  EGE26000.1  8 VLIVGGGHVGLSFALLLAHHGikSTLVEHHRYPT 41
                89**************************998775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.43
                 EEE--GGGHHHH.HTT...C CS
         DAO 196 vVnaaGawsdll.gll...k 211
                 vV + G +s  + ++l    
  EGE26000.1 171 VVACDGQHSA-VrQRLnigV 189
                 6666665553.222222211 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.3e-05     0.054       6      45 ..       4      43 ..       1     184 [. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.3e-05
  NAD_binding_7  6 kgkkvlvvGgGevAarkvrklleagakvtvvapevkeele 45
                   ++k vl+vGgG v+++ +  l+  g k t+v     + +e
     EGE26000.1  4 TQKMVLIVGGGHVGLSFALLLAHHGIKSTLVEHHRYPTIE 43
                   6799**************************9888643333 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00026      0.43       1      29 [.       9      36 ..       9      41 .. 0.86
   2 ?    0.6   0.0      0.16   2.7e+02     225     273 ..     132     183 ..     120     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00026
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEk 29
                 +I+G+G  Gl++a+ l ++g+++ + +E 
   EGE26000.1  9 LIVGGGHVGLSFALLLAHHGIKS-TLVEH 36
                 6********************76.56666 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.16
  Pyr_redox_3 225 ekikvlfnaevkeikeke..eeykvktedgkkvevkddvvla.tGykpdlsf 273
                    i++++ a+v +i ++e   +++vk+++g+  + +   v+a  G ++ +++
   EGE26000.1 132 PLINLYDGASVIDIAQDEahASITVKFDTGQIKTLTAPLVVAcDGQHSAVRQ 183
                  4589999999999987651156688899987777777777775788887765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.4e-05     0.088       2      31 ..       8      37 ..       7      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.4e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithk 31
                v ++GgGh G+  Al +a  G+k +L+ h+
  EGE26000.1  8 VLIVGGGHVGLSFALLLAHHGIKSTLVEHH 37
                89*************************776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 2961.34
//
Query:       EGE26001.1  [L=390]
Description: major facilitator superfamily protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-28   99.2  52.7    2.3e-28   99.2  52.7    2.0  2  MFS_1     Major Facilitator Superfamily
    2.3e-08   33.4  17.0      3e-07   29.7   6.4    3.2  3  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2  52.7   2.5e-32   2.3e-28       2     353 .]      18     352 ..      17     352 .. 0.84
   2 !   13.6  29.7   2.6e-06     0.024      33     172 ..     250     386 ..     246     390 .] 0.81

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 2.5e-32
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ++++f+++l+ + + ++lp  l+ dl +++ ++g+++++  l+ a+ s+++G lsd +Gr+++++ +ll++al ++l+ +ass+  +++ r+lqG+   
  EGE26001.1  18 AMIGFFAFLQVYSVQAILP-VLMIDLKATEVQAGMAVGATVLAIALISPFMGMLSDAVGRKPFIVSSLLMLALPTALIGMASSIHEVIFWRFLQGVSVP 115
                 7899***************.9999**************************************************444447566669************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 +++ + +a+i++ ++  + + +++l+ +g+ lG   g  ++g l + +gWr+ ++++ai +l++++    + + + ++++++   e     ++++++++
  EGE26001.1 116 GITVVLIAYISEEYSS-RLTTMMSLYVSGTVLGGFSGRFFAGHLEHFIGWRYGYIVMAICTLIGAI----WAYKSLHRSQNFIISEN----FRTAFATL 205
                 ***************9.***********************************************77....66689999999999999....99999998 PP

       MFS_1 200 wkallkdpvlwillialllfffgfsg...lltllplylqevlgls...glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgla 292
                 +++ ++      ++++ +l+++++++    +t++ l l e   l      l +   + +++l+g+++ +l++r++ r+g   ++lla+l+ ++++l+ +
  EGE26001.1 206 FSHTKNLH----VICSGFLGACVLFSlvgCFTFINLHLSESPYLLtpaD-LAN---IFAIYLIGMVITPLSTRVVIRFGMTSTILLAILVSITGLLMTL 296
                 88888888....5555555555555522255555554333333334321.223...3333344444478888888889999999999999999999999 PP

       MFS_1 293 llavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 ++++     +++++l l++ g+++++++ +++++++++ e +  asgl+ + ++ gg++g+
  EGE26001.1 297 FMPLG----IVIMGLTLMSSGVFITQSATISYLTSHVS-EGRSLASGLYYMGYYGGGFIGA 352
                 99999....88889999999999999999999999996.********************96 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.6e-06
       MFS_1  33 eigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfs 131
                  +  ++++y +  +v +++  r++ rfG  +++ll++l+++ gll+ lf  +l +++ +  l++ g  +  +a +++++  +++  r++a gl+++g+ 
  EGE26001.1 250 DLANIFAIYLI-GMVITPLSTRVVIRFGMTSTILLAILVSITGLLMTLF-MPLGIVIMGLTLMSSGVFITQSATISYLTSHVSE-GRSLASGLYYMGYY 345
                 55567777776.5566788899999999999999999999999555557.6777788888888888878888888888888888.9************* PP

       MFS_1 132 lGailgpllggllasslgWravfyilaivsllafvlfllll 172
                  G  +g+ + +l ++++ W ++  ++ +v l+a+ ++ l++
  EGE26001.1 346 GGGFIGAWACALAYAQGKWLWTVGLILVVQLIALGVVTLFM 386
                 ******************************99955444444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   6.4   3.3e-11     3e-07      14     129 ..      15     127 ..       7     131 .. 0.96
   2 !   17.2   2.9   2.1e-07    0.0018      44      94 ..     133     183 ..     127     194 .. 0.89
   3 ?   -4.7  24.2      0.92   8.3e+03      31     188 ..     234     382 ..     215     387 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.3e-11
                 HHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHH CS
    Sugar_tr  14 YdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlv 112
                 + +++ig+f+ l+ +  +  l +   + ++++v+ g+ v+++++  ++ s f+g+l+d +GRk+ ++ + +++   ++l+++a    s+  +i+ R+l 
  EGE26001.1  15 FTIAMIGFFAFLQVYSVQAILPVLMIDLKATEVQAGMAVGATVLAIALISPFMGMLSDAVGRKPFIVSSLLMLALPTALIGMAS---SIHEVIFWRFLQ 110
                 77999***************9999999999******************************************************...9*********** PP

                 HHHHHHHHHHHHHHHHT CS
    Sugar_tr 113 GigvGlasvlvPmyisE 129
                 G++v +++v+   yisE
  EGE26001.1 111 GVSVPGITVVLIAYISE 127
                 ***************99 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.1e-07
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqa 94 
                 +++ ++l vs +++G++ G +fag l +++G +++++++a++++iga+  +
  EGE26001.1 133 LTTMMSLYVSGTVLGGFSGRFFAGHLEHFIGWRYGYIVMAICTLIGAIWAY 183
                 57899******************************************9765 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 0.92
                 TSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHH.HHHHHHHHHH CS
    Sugar_tr  31 nfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGl.asvlvPmyis 128
                 + +l  s+s++  +  ++  i++i+l+G +i+ l +  ++ rfG  +++l a+++++ g +++ + +    + ++i+g  l+  gv + +s++++ ++s
  EGE26001.1 234 FINLHLSESPYLLTPADLANIFAIYLIGMVITPLSTR-VVIRFGMTSTILLAILVSITGLLMTLFMP----LGIVIMGLTLMSSGVFItQSATISYLTS 327
                 44555555555556677899*************9988.889**************************....9999999888877766526778888888 PP

                 TTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 129 EiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                  ++  + R+   +ly +++  G +++a+   +l++ ++  +w +++gl lv  l+ l ++
  EGE26001.1 328 HVS--EGRSLASGLYYMGYYGGGFIGAWAC-ALAYAQG--KWLWTVGLILVVQLIALGVV 382
                 887..579*******************975.5666666..79999999999995554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 2584.33
//
Query:       EGE26002.1  [L=689]
Description: ATP-dependent DNA helicase Rep [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-75  253.0   1.3    1.7e-74  251.2   0.2    2.3  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
      2e-71  241.2   1.3      2e-71  241.2   1.3    2.1  2  UvrD_C           UvrD-like helicase C-terminal domain
    6.8e-35  120.5   0.1    1.7e-34  119.3   0.0    1.7  2  AAA_19           AAA domain
    9.8e-10   38.6   0.4    0.00051   19.9   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    1.3e-09   37.7   0.0    3.8e-09   36.2   0.0    1.9  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    4.8e-08   32.9   0.0    0.00038   20.2   0.0    2.4  2  AAA_30           AAA domain
    6.4e-05   22.7   0.7      0.019   14.6   0.0    3.2  3  AAA_12           AAA domain
  ------ inclusion threshold ------
       0.12   12.7   0.6        1.8    8.8   0.1    2.5  2  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.2   0.2   7.7e-78   1.7e-74       1     314 [.      19     284 ..      19     285 .. 0.95
   2 ?   -0.9   0.0      0.42   9.5e+02      84      97 ..     565     578 ..     469     686 .. 0.61

  Alignments for each domain:
  == domain 1  score: 251.2 bits;  conditional E-value: 7.7e-78
                    SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEE CS
  UvrD-helicase   1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisT 96 
                    lnp q ea+++++gp+lv+A+AGsGKT v++++i++li++++i +dri +vTFTnkAa+E+k+R++++l  ++                + +++sT
     EGE26002.1  19 LNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKAAREMKSRVQKILSHEK---------------SRGLTVST 99 
                    799******************************************************************9985...............69****** PP

                    HHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHT CS
  UvrD-helicase  97 lHsfcqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakek 192
                    +H+f++++l+ e ++  l+pnf+ild +d      q+ll+el+    +   nl+  + ++l+                      e  + +s++k++
     EGE26002.1 100 FHQFGLQFLRYELKHTSLKPNFSILDADD-----CQRLLAELMV---R--DNLSGAERRELV---------------------HEAIKKISDWKND 164
                    *****************************.....999***9997...3..466666666553.....................4777899****** PP

                    TCCTTHHCHSSTSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEE CS
  UvrD-helicase 193 qlspkelkkafekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfm 288
                    ++ pk+  +    +++++  + ++++ y+++++++na+Df+dl+  ++++l+e +e+ +++++r++++l+DEyQDTn +Qy+++kll+ +   +++
     EGE26002.1 165 LIAPKDAAE--TLDDPEDLGFVHLYELYERNLRAYNAVDFDDLIAMPVRILRESHEVKDKWQNRIRYLLVDEYQDTNTAQYELIKLLVGRLGRFTV 258
                    ******999..569999999**************************************************************************** PP

                    EE-GGG--GGGGTB-THHHHHHHHHS CS
  UvrD-helicase 289 vGDpkQsIYgFRgAdielflkkkkdf 314
                    vGD++QsIY +RgA++e++   k+df
     EGE26002.1 259 VGDDDQSIYTWRGAKPENMALLKQDF 284
                    *******************9999998 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.42
                    HHHHHCTTSEEEEH CS
  UvrD-helicase  84 lalqnlseanisTl 97 
                    ++++n++++n  Tl
     EGE26002.1 565 QEEENTNKVNLMTL 578
                    11222222222222 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.34   7.6e+02     118     165 ..      54     100 ..      16     243 .. 0.70
   2 !  241.2   1.3   8.8e-75     2e-71       1     348 [.     290     634 ..     290     635 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.34
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 118 aylkllankqdkialkrilkrlvlgigkatveriseelkklglsltDf 165
                 ++++  + + d i+    +++  ++++++ ++++ ++ k++gl ++ f
  EGE26002.1  54 HLIENCRIPADRITAVTFTNKAAREMKSRVQKIL-SHEKSRGLTVSTF 100
                 3344444455566666666666666665555555.5555556555554 PP

  == domain 2  score: 241.2 bits;  conditional E-value: 8.8e-75
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnrralekek...ktvekgekivvleaeteeeEaekiaatikall.ekneklediavLvRsnkdadkiskaLkke 95 
                 ++Le+NyRSt+ +l+aan++++n+ +      ek   +++ +geki+v++++++ +Eae +a++i ++   +n+  +++avL+Rsn +a+ ++ +L+++
  EGE26002.1 290 VKLEQNYRSTNHILGAANAVIANNEHM----FEKslwSDKGDGEKIRVITCNNDFDEAERVAKEILTHRlRNNQTWDKYAVLYRSNFQARALEAQLRQL 384
                 58*******************999999....55556799**************************99988899999*********************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  96 gipfnvvdeekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveriseelkklglsl.........tDfikedtleygeeFielirale 185
                 +ip+++ ++++fF r eikd++ yl++++n++d++a+ r+++++++gig+ t+e++    +++g sl          D +  +    +e F e i+ ++
  EGE26002.1 385 EIPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRVINTPKRGIGSVTLEKLGLFAQHCGTSLlgactragvKDALGAKAGAIIESFGEFINYYT 483
                 ********************************************************77777787765333333333699999999999***97776666 PP

                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 186 eknlelllkkiektaeerqalvsk.yadlfkelaeklaelkekseskrkkeeklenlreLysllkelekkeeeeeveeklneileiatLseseleeskk 283
                 ++ l+   ++ ++ +  rq++ +  y d+ ke           s++ ++++ +l+n++ Ly  +  l++ + +e+ ++ +  ++++  L ++ ++++++
  EGE26002.1 484 HQ-LH---DNSDPMPLVRQMITETgYIDYVKE----------SSKNPQQEKGRLDNIEALYLSIAALINRADDEHDKT-IDAVIRKMVLLDMLEQQQEE 567
                 54.44...579999999999886537776554..........4444444445*****************999988877.99999999888887777666 PP

                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 284 k..ekipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfisysk 348
                 +  +k++++T+H+AKGlEFd+V+++g+ee+ +P+  s  ++++eEE+Rl+YV+iTRAk++L++ ++k
  EGE26002.1 568 EntNKVNLMTLHAAKGLEFDYVYIIGCEEKLLPHVNSIMSANIEEERRLMYVGITRAKSELTLLLCK 634
                 669**********************************************************998776 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.0   7.4e-38   1.7e-34       1     144 [.      23     268 ..      23     270 .. 0.96
   2 ?   -3.1   0.0       4.1   9.1e+03      68      76 ..     564     582 ..     527     617 .. 0.63

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 7.4e-38
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.......atTiHrlal............... 77 
                 q ea+ ++++++llv+aG+G+GKT v+++++a+l+e+ ++++++i++v+ft++Aa+e++ r+++++ +        +T+H+++l               
  EGE26002.1  23 QLEAL-NHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKAAREMKSRVQKILSHeksrgltVSTFHQFGLqflryelkhtslkpn 120
                 67888.999*****************************************************98888899************99*************** PP

      AAA_19  78 ...............................................................................ldfddlltealelle.eaee 96 
                                                                                                +dfddl+ +++ +l+ ++e 
  EGE26002.1 121 fsildaddcqrllaelmvrdnlsgaerrelvheaikkisdwkndliapkdaaetlddpedlgfvhlyelyernlraynaVDFDDLIAMPVRILReSHEV 219
                 **********************************************************************************************74555 PP

      AAA_19  97 ekklqeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQliyv 144
                 ++k q++  +l+vDE+qd++  qy+L+k l+g+  ++++vGD+dQ+iy 
  EGE26002.1 220 KDKWQNRIrYLLVDEYQDTNTAQYELIKLLVGRLGRFTVVGDDDQSIYT 268
                 667777878**********************99999***********97 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.1
      AAA_19  68 e..........atTiHrla 76 
                 +           +T+H+  
  EGE26002.1 564 QqeeentnkvnLMTLHAAK 582
                 0333333333356666554 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00018      0.41       2      59 ..      35      92 ..      34     100 .. 0.75
   2 !    4.9   0.0    0.0085        19      56     117 ..     220     282 ..     191     366 .. 0.71
   3 !   19.9   0.0   2.3e-07   0.00051     171     232 ..     562     630 ..     537     632 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
  Viral_helicase1  2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegk...pklpnlsvrtvdsflmalvk 59
                     +v + +G+GK+++i + + +   l +n++  +++  ++   +k+ ++  ++v+++l++ + 
       EGE26002.1 35 LVLAGAGSGKTSVITQKIAH---LIENCRIPADRITAVtftNKAAREMKSRVQKILSHEKS 92
                     78899*********999988...55666656666666667777777777778888887664 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0085
  Viral_helicase1  56 alvkstkgkililDEylllhaGyill.laalskaklvilfGDplQipfhsrnasfllahlpss 117
                      +++++ + ++l++DEy+  ++++ +l  +   ++  + ++GD  Q+ +  r a+ ++  l ++
       EGE26002.1 220 KDKWQNRIRYLLVDEYQDTNTAQYELiKLLVGRLGRFTVVGDDDQSIYTWRGAKPENMALLKQ 282
                      4455566789*********999888843334456689999*****999877766665555444 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 2.3e-07
  Viral_helicase1 171 tftqalkealgvrevttvhevqGltfdkVtlvllketdlelis........esrenllvAlTRhrkslvi 232
                      ++ q++ ++ +v+  +t h + Gl+fd V ++  +e+ l  ++        e+r  ++v++TR++++l++
       EGE26002.1 562 EQQQEEENTNKVN-LMTLHAAKGLEFDYVYIIGCEEKLLPHVNsimsanieEERRLMYVGITRAKSELTL 630
                      3445555555555.********************8876554449999****88**************987 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   1.7e-12   3.8e-09       4      51 ..     575     630 ..     572     631 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.7e-12
    UvrD_C_2   4 altihkaQGsefpaVivfdpdlaaarmgel........rrrlLYtavTRAreklil 51 
                  +t h a+G+ef++V+++  ++   ++ +          rrl Y+++TRA+ +l+l
  EGE26002.1 575 LMTLHAAKGLEFDYVYIIGCEEKLLPHVNSimsanieeERRLMYVGITRAKSELTL 630
                 68***************999988888776699999******************998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.7e-07   0.00038       2      76 ..      19     103 ..      18     138 .. 0.78
   2 !   10.3   0.0   0.00019      0.43      79     172 ..     216     313 ..     168     327 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.7e-07
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaag...grviglAptgkaAkvLa..........eelgieastiakl 76 
                 ln+ Q +a++++  +g    ++ ++AG+GKt ++++  ++++e+      r+ +++ t+kaA++++          ++ g++ st +++
  EGE26002.1  19 LNPRQLEALNHT--QG--PLLVLAGAGSGKTSVITQKiAHLIENCRipaDRITAVTFTNKAAREMKsrvqkilsheKSRGLTVSTFHQF 103
                 888999999765..33..3688999*******998652777776667889****************66666665555777888888877 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00019
      AAA_30  79 rlkgrarlepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlvea....agigtaeLtevvRqkeseeraaalalreg 172
                 +++ + +++++ + l+vDE   ++t+q + l+k +  +  +  +vGD++Q     +G+  + ++       + ++++L++++R +++   aa   ++++
  EGE26002.1 216 SHEVKDKWQNRiRYLLVDEYQDTNTAQYE-LIKLLVGRLGRFTVVGDDDQSIYTWRGAKPENMALLkqdfPNLEVVKLEQNYRSTNHILGAANAVIANN 313
                 333556889999**********9999986.677777779***********9999999887776433223345599999****99987777766666655 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.022        50      93     151 ..      46     103 ..      42     105 .. 0.92
   2 ?    1.1   0.0      0.12   2.6e+02      14      38 ..     286     310 ..     276     406 .. 0.83
   3 !   14.6   0.0   8.3e-06     0.019     125     195 ..     555     631 ..     481     635 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.022
      AAA_12  93 elvvklvekllkkgseeerkkigvitpYraqvellkkklkekeeeksekeievntvdgf 151
                 +++++ + +l++++     ++i  +t+ ++ ++ +k+++++  ++++++ ++v+t  +f
  EGE26002.1  46 SVITQKIAHLIENCRIP-ADRITAVTFTNKAAREMKSRVQKILSHEKSRGLTVSTFHQF 103
                 678999999***99999.8*********************9999999999****99887 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
      AAA_12  14 kekvvlLdtqYRmhpeIsrfpsklf 38 
                 + +vv L+++YR+ ++I+  ++  +
  EGE26002.1 286 NLEVVKLEQNYRSTNHILGAANAVI 310
                 457899**********998877665 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 8.3e-06
      AAA_12 125 ellkkklkekeeeksekeievntvdgfQGrekdviilslVRsn......ekkeigflkderrlNValTRAkskliiv 195
                  +l ++l++++ee+++++++  t  +  G e d++ +     +      +  +  + +++r + V +TRAks+l ++
  EGE26002.1 555 MVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDYVYIIGCEEKllphvnSIMSANIEEERRLMYVGITRAKSELTLL 631
                 456678888888888888***************9976666665566432444555777777789*********9875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0008       1.8       4     103 ..      30     132 ..      26     164 .. 0.68
   2 ?    1.0   0.0      0.22   4.9e+02      81     116 ..     211     250 ..     174     263 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0008
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.....erpevvfvtlpsstsskdllrellralglelka....erlsseellealeqalraravie 93 
                 t+g l+v + +G+GKT ++ +    l     +e+      r + v++t ++  + k+  +++l+  ++++ +        ++ l+  l + + +    +
  EGE26002.1  30 TQGPLLVLAGAGSGKTSVITQKIAHL-----IENcripaDRITAVTFTNKAAREMKSRVQKILSHEKSRGLTvstfHQFGLQFLRYELKHTSLKPNF-S 122
                 89999**************9999988.....344555334444445555555567777777766666655556666666666666666666666666.7 PP

      AAA_22  94 lliiDEaqhl 103
                 +l  D+ q+l
  EGE26002.1 123 ILDADDCQRL 132
                 8888888886 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.22
      AAA_22  81 aleqalrarav.....ielliiDEaqhlrseealeeLrsll 116
                 ++ + +++ ++     i+ l++DE q   + +++e ++ l+
  EGE26002.1 211 RILRESHEVKDkwqnrIRYLLVDEYQDT-NTAQYELIKLLV 250
                 44444444444666778899******99.788888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 4306.55
//
Query:       EGE26003.1  [L=371]
Description: ribosome small subunit-dependent GTPase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-46  158.5   0.0      2e-46  158.0   0.0    1.2  1  RsgA_GTPase   RsgA GTPase
    3.9e-06   26.9   0.0    1.1e-05   25.5   0.0    1.7  1  MMR_HSR1      50S ribosome-binding GTPase
    0.00028   20.5   0.4      0.028   14.0   0.0    2.6  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    0.00068   19.2   0.7        0.6    9.6   0.1    2.6  2  FeoB_N        Ferrous iron transport protein B
     0.0026   18.1   0.0     0.0061   16.9   0.0    1.6  1  AAA_16        AAA ATPase domain
     0.0047   16.3   0.5      0.014   14.7   0.0    2.0  3  Septin        Septin
     0.0054   16.4   0.7      0.012   15.4   0.7    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0088   15.6   0.0        1.2    8.7   0.0    2.9  3  AAA_25        AAA domain
     0.0089   15.0   0.0      0.091   11.7   0.0    2.0  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
     0.0097   16.2   0.1       0.65   10.3   0.0    2.4  2  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.016   14.7   0.4      0.027   14.0   0.4    1.3  1  AAA_7         P-loop containing dynein motor region
      0.017   14.7   0.5        2.1    7.9   0.0    2.3  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.059   13.9   0.5       0.12   12.9   0.1    1.7  1  ABC_tran      ABC transporter
      0.059   13.0   0.1        3.7    7.1   0.0    2.6  3  Ras           Ras family
      0.067   12.5   0.0       0.13   11.6   0.0    1.4  1  AIG1          AIG1 family
      0.077   13.2   0.0       0.21   11.8   0.0    1.7  1  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.14   12.5   0.0       0.29   11.5   0.0    1.5  1  RNA_helicase  RNA helicase
        0.2   11.7   1.4        6.9    6.7   0.4    2.6  2  Dynamin_N     Dynamin family


Domain annotation for each model (and alignments):
>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0   0.0     2e-49     2e-46       2     167 .]     113     298 ..     112     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 158.0 bits;  conditional E-value: 2e-49
                  ---S-EETTTT........EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.....HHHHHHHHHH....HTTSEEEE- CS
  RsgA_GTPase   2 leRknelvrpk........vaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeee.....eleelkeele....algyevllv 82 
                  l+R+ +++rp+        +aNvd l+iv++   p+  +nl+dr+L++a+ ++i+p++vlnK+Dll+e++     ++ ++ +e++    ++g++v+ +
   EGE26003.1 113 LDRHRLITRPDryhkvkpvAANVDMLVIVFAPL-PKPAVNLIDRYLLIAKLNHITPLLVLNKADLLNEQNsndqdAIMQMIDEYRalgdQYGFSVIQT 209
                  6799999999999999999**************.***********************************9999995555556665111166799**** PP

                  -TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT....TEEEESS-SSSS--GC CS
  RsgA_GTPase  83 saktkegleelkellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae....gglliDtPGfreldle 167
                  s++tk+gl++l++++++k+s+++GqSGvGKS+Lin+llp+++++t+ +s++++ G+hTTt+++l++ ++    +g +iDtPG+re++++
   EGE26003.1 210 STHTKSGLQTLSRHINGKLSIFAGQSGVGKSSLINELLPNANQSTNIISQNSQLGQHTTTTSRLMPYDAhhvdKGGIIDTPGIREYGIW 298
                  *****************************************************************99876677999*********9875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.1e-08   1.1e-05       4      58 ..     231     293 ..     229     327 .. 0.67

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.1e-08
                 EEESTTSSHHHHHHHHHT..........STEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSS CS
    MMR_HSR1   4 ivGrpNvGKStLinaltg..........ekaivsdkpgtTrdinegrvklkg.keielvDtpGlie 58 
                 ++G++ vGKS+Lin l+           ++++ +++  tT     +  +  + ++  ++DtpG+  
  EGE26003.1 231 FAGQSGVGKSSLINELLPnanqstniisQNSQLGQHTTTTSRLMPYDAH--HvDKGGIIDTPGI-R 293
                 89**************953333332332345555555555555555444..336789******5.3 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.8e-05     0.028     111     188 ..     153     224 ..     126     230 .. 0.75
   2 ?    4.0   0.1     0.032        32       9      55 ..     232     268 ..     227     298 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHH CS
    GTP_EFTU 111 teevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktlleal 188
                   + l +a+ +++ + +++NK+D l+++ ++ ++++ q +    ++ ++ g +    ++v+ +S  ++ g++tl + +
  EGE26003.1 153 IDRYLLIAKLNHITPLLVLNKADLLNEQNSNDQDAIMQMI----DEYRALGDQ--YGFSVIQTSTHTKSGLQTLSRHI 224
                 457788999999*************999999999999888....444444444..36899999999999999987766 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.032
                 EESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSC CS
    GTP_EFTU   9 ighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiT 55 
                 +g    GK++L+ +Ll ++++ ++  ++++   +l ++        T
  EGE26003.1 232 AGQSGVGKSSLINELLPNANQSTNIISQNS---QLGQHT-------T 268
                 677778999999999988888766444332...122222.......2 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0     0.003         3      89     156 .]     156     224 ..     138     224 .. 0.63
   2 !    9.6   0.1    0.0006       0.6       5      66 ..     231     303 ..     228     307 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.003
                 GGHHHHHHHHHHHHHTTSSEEEE.EETHHHHHHTTEEE-.HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH CS
      FeoB_N  89 tnlernLyLtlqllelgvpvvla.lnmideaekkgieid.lkkLsekLgvpvvktsakkkegieellkai 156
                   l  +L  ++ ll l++  +l   n  d+       id  ++L ++ g+ v++ts+++k+g+++l ++i
  EGE26003.1 156 YLLIAKLNHITPLLVLNKADLLNeQNSNDQDAIM-QMIDeYRALGDQYGFSVIQTSTHTKSGLQTLSRHI 224
                 4444444444444444443333202333333333.345515789*********************99875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0006
                 EEESTTSSHHHHHHHHHTTSEEEEEST......T..SSSEEEEEEEEETT.EEEEEEE----..SSSSSSSHH CS
      FeoB_N   5 lvGnpnvGkttlfnaltgakqkvgNwp......G..vtvekkegklklkg.keveivDlPGi..Yslsaysee 66 
                 ++G+  vGk++l+n+l    ++  N        G  +t   +   ++ ++ ++  i+D PGi  Y + + s +
  EGE26003.1 231 FAGQSGVGKSSLINELLPNANQSTNIIsqnsqlGqhTTTTSRLMPYDAHHvDKGGIIDTPGIreYGIWHLSAD 303
                 79************99766666555431111112111222222222223336677888888877777776666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.2e-06    0.0061      22      57 ..     226     260 ..     216     285 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.2e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdg.giflr 57 
                 g   l ++ G+sGvGKssl++ell  ++++  +i  +
  EGE26003.1 226 G--KLSIFAGQSGVGKSSLINELLPNANQSTnIISQN 260
                 4..566789***************9998883233333 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.7   5.7e+03      41      77 ..      10      44 ..       5      51 .. 0.52
   2 ?   -1.9   0.0       1.6   1.6e+03     147     172 ..     170     194 ..     157     212 .. 0.72
   3 !   14.7   0.0   1.4e-05     0.014       9      71 ..     231     291 ..     226     296 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.7
                ------S-EEEEEEEEETTCEEEEEEEE---BSSSSS CS
      Septin 41 kkkktveikkkkvvieedgvklnltviDtpgfGdavd 77
                +k++t +i+++++v  +d   +   vi   +fG ++d
  EGE26003.1 10 TKRQTRQIEQNQTVQADD-ATFAEGVI-VSHFGKQLD 44
                455566666555544444.33333333.245555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
                 EESSGGGS-HHHHHHHHHHHHHHHHH CS
      Septin 147 viaKaDtltkeElkefKkkireelee 172
                 v+ KaD l +++ +  +  i++ ++e
  EGE26003.1 170 VLNKADLLNEQNSND-QDAIMQMIDE 194
                 788999888776544.5567766665 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.4e-05
                 EEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE--- CS
      Septin   9 vvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpg 71 
                  +G+sg+Gk++lin l+ +  ++++ ++++s+  ++t++ + + +  + ++   +  +iDtpg
  EGE26003.1 231 FAGQSGVGKSSLINELLPNANQSTNIISQNSQLGQHTTTTS-RLMPYDAHH-VDKGGIIDTPG 291
                 68*****************9999988887776554444322.222222222.22456788887 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.7   1.2e-05     0.012      13      59 ..     215     259 ..     210     261 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
      AAA_29  13 dg.htieidlkg.atlltGpsGsGKSTllDAiqalLvpakkvrfNkaan 59 
                 +g +t++ + +g   +++G+sG+GKS+l+      L+p+ +++ N  ++
  EGE26003.1 215 SGlQTLSRHINGkLSIFAGQSGVGKSSLI----NELLPNANQSTNIISQ 259
                 666888888899999*************9....5555666677776665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.3   2.3e+03     177     192 ..      27      42 ..      19      44 .. 0.81
   2 ?    3.5   0.0     0.047        47     144     185 ..     167     208 ..     121     216 .. 0.81
   3 !    8.7   0.0    0.0012       1.2      29      50 ..     223     243 ..     218     247 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.3
      AAA_25 177 rrtgaavllvhHvgKe 192
                 ++t a  ++v H+gK+
  EGE26003.1  27 DATFAEGVIVSHFGKQ 42 
                 56778899******97 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.047
      AAA_25 144 rlvviDplsralggdensnsdvgalvealeriarrtgaavll 185
                  l+v+   + + + ++n+++++ ++++  + + +++g  v+ 
  EGE26003.1 167 PLLVLNKADLLNEQNSNDQDAIMQMIDEYRALGDQYGFSVIQ 208
                 6677766666777799999999***************99985 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0012
      AAA_25  29 llpagelallaGapgtGKttla 50 
                 ++  g+l+++aG++g+GK+ l 
  EGE26003.1 223 HI-NGKLSIFAGQSGVGKSSLI 243
                 54.699*************986 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   9.2e-05     0.091     167     226 ..     164     225 ..     130     232 .. 0.77
   2 ?    1.0   0.0      0.17   1.7e+02      34      50 ..     231     247 ..     226     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.2e-05
                 HH-SEEEEE---HHHHHHHHHHHHHHHHHCSTT..BTTB--EEEEEBCCCTBSHHHHHHHHH CS
        MeaB 167 eiaDiivvnkaDkkeaekaarelraaleleeek..ekeWrpkvlktsavegeGidelvdaie 226
                  i+ ++v+nkaD+ + ++++ +   ++ ++e +   +++   v++ts+ ++ G+++l  +i+
  EGE26003.1 164 HITPLLVLNKADLLNEQNSNDQDAIMQMIDEYRalGDQYGFSVIQTSTHTKSGLQTLSRHIN 225
                 57889*******66666555555555555544434999*******************99886 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.17
                 EEE-TTSSHHHHHHHHH CS
        MeaB  34 ltGvPGaGkstlvealg 50 
                 + G  G+Gks l+++l 
  EGE26003.1 231 FAGQSGVGKSSLINELL 247
                 57999********9985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.095        95      86     126 ..     157     207 ..     143     213 .. 0.78
   2 !   10.3   0.0   0.00065      0.65       7      33 ..     228     254 ..     223     281 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.095
      AAA_22  86 lrarav...ielliiDEaqhlr...s......eealeeLrsllnlsrkgvqli 126
                 l  ++    ++ll++  a+ l+   s      ++++ e r l +  ++g+++i
  EGE26003.1 157 LLIAKLnhiTPLLVLNKADLLNeqnSndqdaiMQMIDEYRALGD--QYGFSVI 207
                 44444455678**********98762677889999999999999..9999997 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00065
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeea 33 
                 + +  G+sG+GK+ l+++ll ++++  
  EGE26003.1 228 LSIFAGQSGVGKSSLINELLPNANQST 254
                 56778**************98886544 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   2.7e-05     0.027      32      74 ..     225     268 ..     201     275 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkld.kekylsltinfsaqts 74 
                 n+k  ++ G++G+GK+++i++ll + + +++++s + ++ ++t+
  EGE26003.1 225 NGKLSIFAGQSGVGKSSLINELLPNANqSTNIISQNSQLGQHTT 268
                 5677899**************88777724455555555555444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.018        18     143     161 ..     167     184 ..     157     198 .. 0.73
   2 ?    7.9   0.0    0.0021       2.1       3      30 ..     229     255 ..     227     286 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.018
                 SEEEEE-HHHHCHC..HHH CS
        cobW 143 dllvlnKtDlldeeallek 161
                  llvlnK+Dll+e+++ + 
  EGE26003.1 167 PLLVLNKADLLNEQNS-ND 184
                 589*********9954.22 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0021
                 EEEEESTTCCHHHHHHHHHCT--SS-EE CS
        cobW   3 tvltGflGsGKTtLlnhllenraglkla 30 
                 ++++G  G GK++L+n+ll n++ +++ 
  EGE26003.1 229 SIFAGQSGVGKSSLINELLPNAN-QSTN 255
                 578999*************6533.3333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00012      0.12      11      48 ..     226     262 ..     217     285 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
                 TSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  11 gekvaivGenGaGKStLlkllagllkpteGeilldgkd 48 
                 g++  + G++G GKS+L++ l+ + ++    i  ++ +
  EGE26003.1 226 GKLSIFAGQSGVGKSSLINELLPNANQSTNII-SQNSQ 262
                 7778899*************999988766666.33333 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.8   3.8e+03      44      63 ..      92     111 ..      80     115 .. 0.79
   2 ?    3.1   0.0     0.062        62     103     151 ..     163     219 ..     123     229 .. 0.72
   3 ?    7.1   0.0    0.0037       3.7       3      29 ..     230     256 ..     227     299 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.8
                 TTEEEEEEEEEETTSGGGHH CS
         Ras  44 dgkevkleiwDTAGqeefks 63 
                  g ++kl++  TAG  + ++
  EGE26003.1  92 TGDRIKLSLDTTAGLGRIEH 111
                 57899999999999877665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.062
                 TTSEEEEEEETTTGGG......G-SS-H..HHHHHHHHHHTSEEEEEBTTTTCTHHH CS
         Ras 103 envpivLvGnKvDlee......kravst..eegeelakelglkfletSAktnenvee 151
                 ++++ +Lv nK+Dl +      + a+ +  +e ++l +++g+  ++tS +t+ ++++
  EGE26003.1 163 NHITPLLVLNKADLLNeqnsndQDAIMQmiDEYRALGDQYGFSVIQTSTHTKSGLQT 219
                 457789********9977777744443312466677788888889999888887765 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0037
                 EEEESTTSSHHHHHHHHHHSSCSSSCT CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeeye 29 
                 ++ G+s+vGK+sl+++   +  +++ +
  EGE26003.1 230 IFAGQSGVGKSSLINELLPNANQSTNI 256
                 567***********9998877665544 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.13       5      61 ..     231     294 ..     229     306 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
                 EESSTTSSHHHHHHHHHTS--.......SS--TTTS---SS-EEEEE.....EETTEEEEEEE--SCCC CS
        AIG1   5 lvGktgnGkSaTgNsilgkka.......Fesklsaqsvtkkcqkksr.....twdgkkinViDTPglfd 61 
                   G++g+GkS+ +N +l +          +s     ++ ++ ++ sr     + +  k  +iDTPg+ +
  EGE26003.1 231 FAGQSGVGKSSLINELLPNANqstniisQNS-----QLGQHTTTTSRlmpydAHHVDKGGIIDTPGIRE 294
                 569**************98873333333333.....344444444444100144445557******976 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00021      0.21       3      34 ..     230     261 ..     228     295 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00021
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigv 34 
                 ++ G+sgvGK+sl+++++ +  ++++      
  EGE26003.1 230 IFAGQSGVGKSSLINELLPNANQSTNIISQNS 261
                 578**************987776655444433 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00029      0.29       3      33 ..     231     261 ..     229     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00029
  RNA_helicase   3 lyGpsgeGKStlakeLakallkklklkkkds 33 
                   + G+sg+GKS+l++eL  +  ++ + ++++s
    EGE26003.1 231 FAGQSGVGKSSLINELLPNANQSTNIISQNS 261
                   78*************9999998886666555 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.4    0.0069       6.9       4      22 ..     232     250 ..     230     261 .. 0.78
   2 ?    3.6   0.0      0.06        60      93     113 ..     276     294 ..     248     301 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0069
                 EEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   4 vGsqSsGKSSvlnaLlged 22 
                  G+   GKSS++n Ll  +
  EGE26003.1 232 AGQSGVGKSSLINELLPNA 250
                 588889*********9665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.06
                 EEEEETTS-SEEEEE---B-S CS
   Dynamin_N  93 lkilsllvkgltlvDlPGlds 113
                 +   + +v++  ++D+PG+ +
  EGE26003.1 276 Y--DAHHVDKGGIIDTPGIRE 294
                 3..3345666668*****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2714.89
//
Query:       EGE26004.1  [L=137]
Description: rhodanese-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-13   50.2   0.0    3.6e-13   49.9   0.0    1.1  1  Rhodanese  Rhodanese-like domain
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.037   14.0   0.0    1.4  1  OppC_N     N-terminal TM domain of oligopeptide transport per
       0.18   12.2   0.0       0.45   10.9   0.0    1.8  1  FtsH_ext   FtsH Extracellular


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   6.1e-17   3.6e-13       3     106 ..      40     126 ..      38     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 6.1e-17
   Rhodanese   3 kelkellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGf 101
                 +el  l ++++++++D+Rp+++++ ghI+g+ n+          + ++l++ ++el++     + +v+++cd g++a aa +l+     +n   l+GG+
  EGE26004.1  40 SELGLLVNNQNARIIDIRPANKFANGHITGSQNI----------PFNDLKNHLAELQAI----EVPVILVCDIGMQAGAAVQLIN--R-PNFMRLEGGI 121
                 5677778899988*********************..........777777777777777....*************777777777..3.99******** PP

   Rhodanese 102 kawke 106
                 +++++
  EGE26004.1 122 QGYQS 126
                 ***97 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.1e-06     0.037       7      31 ..       4      28 ..       2      39 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.1e-06
      OppC_N  7 wrrFkrNklAvvglvilllllliai 31
                w  F  N   +vgl i+l+++++ai
  EGE26004.1  4 WFEFIGNHPVLVGLLIVLIIAFFAI 28
                9999********************8 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.6e-05      0.45       5      39 ..      13      82 ..      12     128 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.6e-05
    FtsH_ext  5 lllallllllllslfg...................................gsgtgstkeisyseFledl 39
                +l++ll++l++++++                                    + + + +++i+++++ ++l
  EGE26004.1 13 VLVGLLIVLIIAFFAIegkrsgrkvppselgllvnnqnariidirpankfaNGHITGSQNIPFNDLKNHL 82
                5667777777777775567776666666666665555555555444444444444499999999997776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 965.76
//
Query:       EGE26005.1  [L=91]
Description: glutaredoxin 3 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-19   69.1   0.0    3.8e-19   68.7   0.0    1.2  1  Glutaredoxin   Glutaredoxin
    2.1e-05   24.8   0.0    2.3e-05   24.7   0.0    1.2  1  DUF836         Glutaredoxin-like domain (DUF836)
    0.00059   19.9   0.0    0.00083   19.5   0.0    1.2  1  SH3BGR         SH3-binding, glutamic acid-rich protein
     0.0026   17.8   0.0     0.0036   17.3   0.0    1.2  1  Thioredoxin_3  Thioredoxin domain
      0.006   17.0   0.0     0.0075   16.7   0.0    1.2  1  GST_N_3        Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.025   14.8   0.4        1.8    8.7   0.2    2.1  2  Thioredoxin_4  Thioredoxin
       0.13   12.7   0.3        0.4   11.2   0.3    1.8  1  Thioredoxin_2  Thioredoxin-like domain
       0.13   11.8   0.0       0.15   11.7   0.0    1.1  1  DUF953         Eukaryotic protein of unknown function (DUF953


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   1.7e-22   3.8e-19       1      60 []       4      65 ..       4      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.7e-22
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSH.HHHHHHHHHH.TSSSSSEEEETTEEE CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkde.eireelkels.gvrtvPqvfidgkhv 60
                  v+++t+ptCpyC +ak+lL+++ v+++ei   +   e re+l +++ g+rtvPq+fi+++++
    EGE26005.1  4 VTIYTTPTCPYCLAAKQLLNNKSVAYDEISMYDINaEDREALSAKTnGYRTVPQIFIGDNFI 65
                  89************************9998766655***********************997 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     1e-08   2.3e-05       1      57 [.       3      62 ..       3      85 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1e-08
                -EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETT.T-CC..CHCCCC..TTTTEEEECT CS
      DUF836  1 kltLyskpgChlCeqakekLkelkleegleleviDIa.kdee..leakYg..leipvlaleg 57
                k+t+y++p C+ C  ak++L + +++ + e++  DI  + +   l ak +   ++p++++ +
  EGE26005.1  3 KVTIYTTPTCPYCLAAKQLLNNKSVAYD-EISMYDINaE-DReaLSAKTNgyRTVPQIFIGD 62
                69********************999999.8999999853.3335655432225788888766 PP

>> SH3BGR  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.7e-07   0.00083      25      94 ..      20      82 ..      16      86 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.7e-07
                HHHHHTT--EEEEETTT.-HHHHHHHHHCST-CCCS-SSSS--S-EEEETTEEEEEHHHHHHHHTTT-HHH CS
      SH3BGR 25 riLdakkiefdevDitk.deeerelmrenaapeekkpengkplPPqifnedeYcGDydaffeakeentlee 94
                ++L+ k + +de+ + + ++e+re +  +        +ng+ + Pqif +d+++G +d+  + +    l e
  EGE26005.1 20 QLLNNKSVAYDEISMYDiNAEDREALSAK--------TNGYRTVPQIFIGDNFIGGFDQLNKLNADGKLDE 82
                689999999*9999988788888888744........599******************9988776665555 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.6e-06    0.0036       2      58 ..       3      63 ..       2      68 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.6e-06
                   EEEE.ESSSSTTCHHHHHHHHHHCHCC.TCECEEECCTTHHHH..HHCT-SSSSEEECTTC CS
  Thioredoxin_3  2 eikv.lgpgCakCpklekavkeaaaek.gikaevekvtdfeei..ekygVmsvPalvidgk 58
                   ++ +  +p+C++C +++++++       +i++  ++++d e +  + +g ++vP+++i ++
     EGE26005.1  3 KVTIyTTPTCPYCLAAKQLLNNKSVAYdEISMYDINAEDREALsaKTNGYRTVPQIFIGDN 63
                   678867999*****8888776655555379998888899999887889999*******886 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.3e-06    0.0075       2      53 ..       7      61 ..       6      71 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.3e-06
                ES-TTSHHHHHHHHHHHHHT--EEE...E---TTTTHHHHHHH-TT--SSEEETT CS
     GST_N_3  2 ygfpaSpyarrvrlaLnekglpvev...vevtpgehdeellaknplgkvPvLedd 53
                y +p++py+  ++ +Ln k +++ +   ++++ +++ +   + n++++vP + ++
  EGE26005.1  7 YTTPTCPYCLAAKQLLNNKSVAYDEismYDINAEDREALSAKTNGYRTVPQIFIG 61
                899*******************9873336666666655556667******87555 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2   0.00082       1.8      16      36 ..       3      23 ..       1      35 [. 0.82
   2 ?    4.7   0.0     0.013        30     131     154 ..      45      68 ..      30      77 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00082
                   EEEEEE-TT-HHHHHHHHHHH CS
  Thioredoxin_4 16 tvieyedlrCphCakfeeeve 36
                   +v++y+  +Cp+C + ++ ++
     EGE26005.1  3 KVTIYTTPTCPYCLAAKQLLN 23
                   6899*********99988776 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.013
                    HHHHHHT--SS-EEEETTEEE-TT CS
  Thioredoxin_4 131 keakkagiestPtfiingekveep 154
                     +ak++g  ++P ++i++  + + 
     EGE26005.1  45 LSAKTNGYRTVPQIFIGDNFIGGF 68 
                    457999************998754 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00018       0.4       8      33 ..       3      27 ..       2      72 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
  Thioredoxin_2  8 vlvvftdpdCpyCkklkkelkelddv 33
                    ++++t+p+CpyC + k+ l +  +v
     EGE26005.1  3 KVTIYTTPTCPYCLAAKQLLNNK-SV 27
                   58899********9977744433.33 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.6e-05      0.15      38      85 ..      12      58 ..       7      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
                SHHHHHHHHHHHHHHHH-SS-EEEEEEE---HHHHT-TTSHHHH..TS CS
      DUF953 38 CPdCvkaepvieealkeapedvklvrvdvGdrevWkdpanpfRkdpkl 85
                CP+C +a + +++    a  ++ +  +++ dre    + n +R+ p++
  EGE26005.1 12 CPYCLAAKQLLNNK-SVAYDEISMYDINAEDREALSAKTNGYRTVPQI 58
                ********999874.3355689999******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 657.55
//
Query:       EGE26006.1  [L=148]
Description: preprotein translocase subunit SecB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-51  171.5   0.2    1.1e-50  171.2   0.2    1.0  1  SecB      Preprotein translocase subunit SecB
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.037   14.2   0.0    1.3  1  DUF2012   Protein of unknown function (DUF2012)


Domain annotation for each model (and alignments):
>> SecB  Preprotein translocase subunit SecB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.2   1.2e-54   1.1e-50       3     139 ..       4     138 ..       2     141 .. 0.96

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 1.2e-54
        SecB   3 eaqpqlriqkqYvkDlSfenpnapeifleaeeqPevkvnlnveakkleeevyevvlkitvtakaeektlFlvevkyaGiftienipeeqlepllliecP 101
                 e qpql ++++Y+kD+Sfe+pn+ e+f++ ++qPe++v+++++ + l+e+  evvl+++vtak +e+++F++ev++aGif ++nipe+++ +ll+++cP
  EGE26006.1   4 ELQPQLGLERIYTKDISFEVPNT-EVFTK-QWQPETDVSISTSDNDLDEDYKEVVLTVSVTAKLGESVAFIAEVQQAGIFLMRNIPEADMPHLLQAYCP 100
                 679*******************7.78877.9******************************************************************** PP

        SecB 102 rilFPyaReivsdlvreggfppllLepinFealyqqql 139
                 +ilFPyaRe++sd+v++g+fp+llL+p+nFe+ + q++
  EGE26006.1 101 NILFPYAREAISDIVTRGSFPQLLLAPVNFEQAFLQSQ 138
                 *********************************99876 PP

>> DUF2012  Protein of unknown function (DUF2012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.1e-06     0.037       5      62 ..      32     113 ..      29     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-06
     DUF2012   5 nllantrvlLds......................gqqrkfkalvrrDGsFifrdlpeg..sYlLevespeyvFepyrVdvkd 62 
                 +++++t v++++                      g++  f a v++ G F++r++pe+   +lL++  p++ F+  r  ++d
  EGE26006.1  32 QWQPETDVSISTsdndldedykevvltvsvtaklGESVAFIAEVQQAGIFLMRNIPEAdmPHLLQAYCPNILFPYAREAISD 113
                 677777777744455566666666777777777788889*******************999************988877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1177.32
//
Query:       EGE26007.1  [L=154]
Description: deoxyuridine 5'-triphosphate nucleotidohydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-32  111.8   0.0    2.1e-32  111.5   0.0    1.1  1  dUTPase   dUTPase
  ------ inclusion threshold ------
       0.21   11.5   0.0        0.4   10.6   0.0    1.5  1  DUF5001   Ig-like domain


Domain annotation for each model (and alignments):
>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.0   2.4e-36   2.1e-32       3     129 .]      19     152 ..      18     152 .. 0.95

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 2.4e-36
                 CTBEBESSTT-SSEEEE-SSS..EEEETTEEEEEEEEEEEE--T.TEEEEEEE-HHHHHHHEEEEE...EEEETTBTSEEEEEEEE-SSS-EEE-TT-E CS
     dUTPase   3 aeiptrkspesAgyDlsaakd..ltvkpgetvlvptdisiklpd.glaalilpRSglaakglivvp...gvidsdyrGevkvvlfnltkkdvkikkgdR 95 
                 +++pt ++++sAg Dl+a+ d  +++ +get+lv t++si+++d + a+lilpRSgl +k++iv++   g+idsdy+Ge++v+++n+++ ++++k  +R
  EGE26007.1  19 FPLPTHATAGSAGIDLRACIDepMIIAAGETKLVGTGLSIYISDpNFAGLILPRSGLGHKHGIVLGnlvGLIDSDYQGELMVSIWNRSDTNFELKPAER 117
                 6899************998662267888*********************************************************************** PP

                 EEEEEEEEBECGEEEEESST.TTESSBTTXTTTTX CS
     dUTPase  96 iAqLifariltaeleevetl.katergeggfgssg 129
                 +Aq ++++i  + +e v+t+ + + rg+ggfgssg
  EGE26007.1 118 MAQYVIVPIMRPDFEIVDTFsDISTRGSGGFGSSG 152
                 ********************9999*********97 PP

>> DUF5001  Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.5e-05       0.4      11      33 ..      95     117 ..      87     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.5e-05
                 TTEEEEEEEE-SSS-EEEEE-S- CS
     DUF5001  11 tkvleveikNkSdidFeLentse 33 
                 +  l v+i N Sd +FeL+ + +
  EGE26007.1  95 QGELMVSIWNRSDTNFELKPAER 117
                 56789*************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       225  (0.0125495); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1256.09
//
Query:       EGE26008.1  [L=78]
Description: ubiquitous surface protein A1 UspA1, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0067   16.2   3.0        1.3    8.9   1.1    2.8  3  ESPR       Extended Signal Peptide of Type V secretion system
     0.0074   16.7  10.3      0.015   15.7   1.1    2.8  2  UspA1_rep  Ubiquitous surface protein adhesin repeat
  ------ inclusion threshold ------
      0.044   13.4   0.2      0.045   13.4   0.2    1.1  1  DUF1411    Protein of unknown function (DUF1411)


Domain annotation for each model (and alignments):
>> ESPR  Extended Signal Peptide of Type V secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   1.1   0.00021       1.3       1       7 [.       1       7 [.       1       8 [. 0.94
   2 !    6.2   0.0    0.0015       8.9      14      24 .]      13      23 ..       9      23 .. 0.81
   3 ?   -2.0   0.0      0.53   3.2e+03      10      15 ..      66      71 ..      66      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00021
        ESPR 1 MNkIYRl 7
               MNkIY++
  EGE26008.1 1 MNKIYKV 7
               ******9 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0015
        ESPR 14 gqlvaVsElar 24
                g lva+sE a+
  EGE26008.1 13 GHLVACSEFAK 23
                559******98 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.53
        ESPR 10 nktrgq 15
                nk++g 
  EGE26008.1 66 NKATGR 71
                899996 PP

>> UspA1_rep  Ubiquitous surface protein adhesin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.1   2.5e-06     0.015       3      13 .]      60      70 ..      60      70 .. 0.97
   2 !    4.8   2.4    0.0081        48       1       6 [.      73      78 .]      73      78 .] 0.97

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.5e-06
   UspA1_rep  3 VgGGdnNqAkG 13
                +gGGd+N+A+G
  EGE26008.1 60 IGGGDDNKATG 70
                8*********9 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0081
   UspA1_rep  1 STVgGG 6 
                ST+gGG
  EGE26008.1 73 STIGGG 78
                9****9 PP

>> DUF1411  Protein of unknown function (DUF1411)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   7.6e-06     0.045       2      43 ..      12      53 ..      11      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.6e-06
     DUF1411  2 sGhlvCksGfglGkvaklmlasvvvlsalsgnvladeaevsk 43
                +Ghlv  s f+ G+  k +l s++++ al     a+   ++ 
  EGE26008.1 12 AGHLVACSEFAKGHTKKAVLGSLLIVGALGMATTASAQATNS 53
                6****************************9888885444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 705.05
//
Query:       EGE26009.1  [L=57]
Description: hypothetical protein EA1_05783 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 431.69
//
Query:       EGE26010.1  [L=570]
Description: 2-isopropylmalate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-74  249.0   0.0    8.5e-74  248.4   0.0    1.2  1  HMGL-like   HMGL-like
      1e-11   44.8   3.0    5.6e-11   42.5   3.0    2.1  1  LeuA_dimer  LeuA allosteric (dimerisation) domain
  ------ inclusion threshold ------
       0.13   12.3   0.1       0.53   10.3   0.0    2.0  2  RcsC        RcsC Alpha-Beta-Loop (ABL)


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.4   0.0   1.4e-77   8.5e-74       2     264 .]      39     319 ..      38     319 .. 0.97

  Alignments for each domain:
  == domain 1  score: 248.4 bits;  conditional E-value: 1.4e-77
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B.....--EE-SSHHHHHHHHH....TT-SEEEEEE CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkar...ilalvrarekdikaavealkgagakrvhvfi 97 
                 +++ +++LRDG+qal +++++e+kl+ +k L+e+g++eiE+gfp+a + +f+++r +++++  ++   +++lv+are++i++++ealkga  ++vhv++
  EGE26010.1  39 PIWASVDLRDGNQALIDPMTIEQKLKFFKLLVEIGFKEIEIGFPSAAQVEFDFTRRLIEEGLVPDdvtLQVLVQAREHLIDRTFEALKGARRAIVHVYN 137
                 6899**********************************************************998899******************************* PP

                 ES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-E.......TTT-BTTTBS--HHHHHHHHHHHHHH......T-SEEEEEETTS---HHHHHHHHHH CS
   HMGL-like  98 atselhlkaklkkdreevakkaeeavkaarslgkd.......velsledasrtdleflaevveaaeea......GatriniaDtvGvltPneaaelisa 183
                 +ts++++ +++++d+++++++a +   + r+++k+        e+s+e++s+t+ ++++ev++a+ e+         ++n+++tv++ tPn++a+++++
  EGE26010.1 138 STSKVQRDKVYQMDKAQIKQIAIDGATMLRDKAKHypdtqwvFEYSPESFSQTETDYAVEVCDAVCEIwrpdtgQEVILNLPATVEASTPNVYADQVEY 236
                 *****************************************99*****************************9445578******************** PP

                 HHHHS-...GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHHHH CS
   HMGL-like 184 lkervk..dkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaalv 264
                 + +++k  ++v++s+H+Hnd+G+Ava+++++++aGadr++gt++G+Ger+Gn+++ +++++l+++g+d++ldl+++ +i ++v
  EGE26010.1 237 FCRHLKarPHVTISLHTHNDRGCAVAASELGLMAGADRIEGTLLGNGERTGNMDILVMAMNLYTQGIDPELDLSQVSDIVQIV 319
                 *****************************************************************************998876 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   3.0   9.3e-15   5.6e-11       2     130 ..     433     567 ..     432     570 .] 0.82

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 9.3e-15
                 XXXXXXXXXXXXXXXXXX--EEEEEEEEEEETTCEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--..........TT-T CS
  LeuA_dimer   2 vtdedlealvkdelleaeerlkleklqvssgedelstatvklevkdgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhai..........tegt 90 
                 ++ ++l +++ + +l+ +++++l ++++s++ d   + + ++    +   e+ ++GnG+++A+++ l k +g++i++++Y +hai           ++t
  EGE26010.1 433 LKTDELLEIFTQAYLK-QDKFRLSDYTISNKGD-AVSFQGQVAT-PKAVFEVIGQGNGALSAFIDGLVKSTGRQIHVTNYAEHAIdnkthqktdtDNQT 528
                 6778999999999987.789********99887.5556666666.56777**********************************933333222222468 PP

                 T--EEEEEEEE--GGGEEEEEEEESSHHHHHHHHHHHHHH CS
  LeuA_dimer  91 daqaevrVelevddgkkvsgvGvdsdiveASlkAlisaln 130
                 da a+++++l+  +g+++sg+++ +++v A lk  +sal 
  EGE26010.1 529 DAAAAAYIQLS-VEGQIYSGIATCHSTVSAMLKGALSALA 567
                 9**********.56666****************9999986 PP

>> RcsC  RcsC Alpha-Beta-Loop (ABL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.6   9.7e+03      10      29 ..     439     458 ..     437     463 .. 0.80
   2 ?   10.3   0.0   8.9e-05      0.53       7      59 ..     486     540 ..     483     553 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.6
        RcsC  10 LeeylqrlLsesgltvarye 29 
                 Le + q++L++  ++  +y 
  EGE26010.1 439 LEIFTQAYLKQDKFRLSDYT 458
                 78899999999999887775 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 8.9e-05
        RcsC   7 NasLeeylqrlLsesg..ltvaryeeqevseddvlitDepeaeaievravielse 59 
                 N +L +++  l +  g  ++v++y+e++++++    tD++++++ +++a+i+ls 
  EGE26010.1 486 NGALSAFIDGLVKSTGrqIHVTNYAEHAIDNKTHQKTDTDNQTDAAAAAYIQLSV 540
                 88999*******99873366999*****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4170.20
//
Query:       EGE26011.1  [L=158]
Description: AsnC family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-21   75.7   0.5    3.6e-21   74.9   0.5    1.4  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    3.6e-17   61.6   1.3    5.4e-17   61.1   1.3    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
    4.2e-15   55.3   1.4    7.1e-15   54.6   1.4    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    0.00012   21.9   0.1    0.00024   21.0   0.1    1.6  1  MarR            MarR family
    0.00081   19.3   0.3     0.0015   18.4   0.3    1.4  1  HTH_11          HTH domain
     0.0018   18.3   0.1     0.0044   17.0   0.1    1.7  1  HTH_Mga         M protein trans-acting positive regulator (MG
     0.0092   15.8   0.0      0.022   14.6   0.0    1.5  1  HTH_IclR        IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.2   0.1      0.023   14.4   0.1    1.4  1  HTH_DeoR        DeoR-like helix-turn-helix domain
       0.02   14.9   0.0      0.037   14.1   0.0    1.4  1  HTH_20          Helix-turn-helix domain
       0.03   14.2   0.0      0.049   13.5   0.0    1.4  1  MarR_2          MarR family
       0.06   13.2   0.0       0.11   12.3   0.0    1.3  1  HTH_5           Bacterial regulatory protein, arsR family
      0.081   12.3   0.1       0.56    9.7   0.0    2.1  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
       0.11   13.0   0.0       0.24   11.9   0.0    1.6  1  HTH_27          Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.5   2.6e-24   3.6e-21       1      75 []      76     151 ..      76     151 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 2.6e-24
                     EEEEE-GGG.TTHHHHHHHHHHTSTTEEEEEEESS.SSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg   1 vlvslepgh.peqleefeealaelpeVvecyrvtG.dydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     v vs++ +h +e + efe ++++++eVv+c +vtG + dyllkv v+d++++e+fl ++l++++gv + +ts+vl++
      EGE26011.1  76 VAVSMD-KHtAERFYEFESQIQNFDEVVSCSVVTGrSEDYLLKVLVKDMRHYEEFLLHRLSKIEGVSQLHTSFVLRE 151
                     679999.777*************************999*************************************85 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   1.3   3.9e-20   5.4e-17       1      48 []      10      57 ..      10      57 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 3.9e-20
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                ld td kIL++L +++r+s++e++e+++lSp+++ rr+krLe+ G+I+
  EGE26011.1 10 LDTTDQKILRILTDDARLSIAEISEQIHLSPTPTIRRIKRLEDIGVIT 57
                79*********************************************6 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   1.4   5.2e-18   7.1e-15       1      42 []      10      51 ..      10      51 .. 0.99

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 5.2e-18
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD +D+kIL++L  daR+s ae++e+++lS+++ +rR++rLe
     EGE26011.1 10 LDTTDQKILRILTDDARLSIAEISEQIHLSPTPTIRRIKRLE 51
                   8****************************************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.7e-07   0.00024       7      48 ..      16      57 ..      10      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.7e-07
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                +iLril +   ls++e+ +++++s++ + r ++rLe+ G i+
  EGE26011.1 16 KILRILTDDARLSIAEISEQIHLSPTPTIRRIKRLEDIGVIT 57
                79*************************************997 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   1.1e-06    0.0015       3      44 ..      15      55 ..      13      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.1e-06
      HTH_11  3 lqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                ++il++L   +  +s++e++e++++S +   r+Ik+Le++gv
  EGE26011.1 15 QKILRIL-TDDARLSIAEISEQIHLSPTPTIRRIKRLEDIGV 55
                69999**.77777**************************995 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   3.2e-06    0.0044       5      34 ..      12      40 ..       3      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.2e-06
     HTH_Mga  5 krklkLlelLteneksltldelakeLglse 34
                ++++k+l +Lt+ + +l++ e++++ +ls 
  EGE26011.1 12 TTDQKILRILTD-DARLSIAEISEQIHLSP 40
                6899********.***************95 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.6e-05     0.022       8      47 ..      17      55 ..      16      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-05
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGy 47
                iL++l+  ++ l+++e++++++l+++ + R ++ L+  G 
  EGE26011.1 17 ILRILTDDAR-LSIAEISEQIHLSPTPTIRRIKRLEDIGV 55
                9999999999.9**************99999999998886 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.7e-05     0.023       3      45 ..      15      57 ..      14      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
    HTH_DeoR  3 eqilellkqqgklsveelvellgvSea.TiRRDLneLeeqgllt 45
                ++il  l ++  ls+ e++e+   S++ TiRR ++ Le  g++t
  EGE26011.1 15 QKILRILTDDARLSIAEISEQIHLSPTpTIRR-IKRLEDIGVIT 57
                89***********************877****.88888888887 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.7e-05     0.037      13      56 ..      15      58 ..      10      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLvev 56
                 +ilr L++++ l+ +e+ e++ ls++   ++++ Le+ g +++
  EGE26011.1 15 QKILRILTDDARLSIAEISEQIHLSPTPTIRRIKRLEDIGVITG 58
                68**************************************9986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.5e-05     0.049       4      52 ..      11      57 ..       8      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.5e-05
                -HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2  4 tpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                + ++  +L  L +  +  l+++e+ +  +ls+  + r++krL++ G ++
  EGE26011.1 11 DTTDQKILRILTDDAR--LSIAEISEQIHLSPTPTIRRIKRLEDIGVIT 57
                5566667778888877..*************************988775 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.2e-05      0.11       6      45 ..      16      56 ..      13      57 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.2e-05
                HHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  6 kILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                kIL++L +   l++ e++e+++ls+  + +  k+L++ G++
  EGE26011.1 16 KILRILTDdARLSIAEISEQIHLSPTPTIRRIKRLEDIGVI 56
                8*******788*************************99987 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.35   4.9e+02      30      42 ..       1      13 [.       1      14 [. 0.88
   2 ?    9.7   0.0    0.0004      0.56      17      50 ..      14      49 ..      13      51 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.35
  HTH_Tnp_ISL3 30 vkavArqlgvSwt 42
                  +++vA+q+++++t
    EGE26011.1  1 MSHVAKQTDLDTT 13
                  689******9886 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0004
  HTH_Tnp_ISL3 17 eayilellles..rsvkavArqlgvSwtTVwrildr 50
                  +++il+ l+++   s++++++q ++S+t  +r+++r
    EGE26011.1 14 DQKILRILTDDarLSIAEISEQIHLSPTPTIRRIKR 49
                  58899999999999************9977777777 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.24       8      48 ..      17      56 ..      10      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
      HTH_27  8 vLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLv 48
                +L+ +   ++r ++a++++   ++ ++++  +k+L+  G++
  EGE26011.1 17 ILRILT-DDARLSIAEISEQIHLSPTPTIRRIKRLEDIGVI 56
                799999.9******************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1239.97
//
Query:       EGE26012.1  [L=263]
Description: hydroxyacylglutathione hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-19   68.1   1.1    1.3e-18   67.3   1.1    1.4  1  HAGH_C           Hydroxyacylglutathione hydrolase C-terminus
    7.6e-17   62.0   2.1    1.8e-16   60.7   2.1    1.5  1  Lactamase_B      Metallo-beta-lactamase superfamily
    0.00035   20.1   4.9    0.00049   19.7   3.0    2.1  1  Lactamase_B_2    Beta-lactamase superfamily domain
    0.00078   19.4   0.3     0.0016   18.3   0.1    1.6  2  Lactamase_B_3    Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.034   13.6   0.3      0.069   12.6   0.1    1.6  2  Lactamase_B_6    Metallo-beta-lactamase superfamily domain
      0.058   13.2   0.0       0.54   10.0   0.0    2.3  2  Ig_mannosidase   Ig-fold domain
       0.14   12.7   1.9        3.5    8.2   0.2    2.7  2  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> HAGH_C  Hydroxyacylglutathione hydrolase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   1.1     5e-22   1.3e-18       1      80 []     174     263 .]     174     263 .] 0.86

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 5e-22
      HAGH_C   1 EYtlsNlkFalsv..epdnealkkrlkevkelrakgeptvpstladEkktNpFLRl....depevqkavg.ee...vevfaaLRelKdnF 80 
                 EYt+sNlkFa+sv  + +++a+k+  + + ++r+++++t+p++la+E+++N+FL +    + ++++++ g ++   ++vf++LRe K++F
  EGE26012.1 174 EYTVSNLKFAKSValDEHQDAIKHATNIAITQRQNNQMTLPVSLAHERQINVFLHAcddnKAKQLANQHGlNDnsaLAVFRWLREQKNHF 263
                 9***********9777899************************************975433444555544422689************99 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   2.1   7.2e-20   1.8e-16       7     160 ..      16     145 ..      11     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 7.2e-20
                  EEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCGC CS
  Lactamase_B   7 nsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsad 104
                  +++lie+  ++i+iD G+s+e          l ++++ ++a+++TH+H DH+Gg+++l ++++++  +  ++a ++f++ ++                
   EGE26012.1  16 YIWLIENQMTTIIIDLGSSQEVLAY------LQKNQLTPSAILVTHHHDDHTGGVRDLLSQYKNCALY--AHANHGFDDIPKV--------------- 90 
                  79********************997......79***************************99987765..5677777777733............... PP

                  CEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCC CS
  Lactamase_B 105 kpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgri 160
                   + vde ++   ++ +  + +t g++ +h+++v e++ ++ +f+GD+l+++  gr+
   EGE26012.1  91 -NLVDEGDHFAVGDICFQVWHTAGHTDSHLSYVTEIDQKTRVFCGDTLFSAGCGRV 145
                  .446666666666666666667777777777888889999**********999886 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   3.0   1.9e-07   0.00049      31     143 ..      48     136 ..      25     144 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.9e-07
                    EEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEECSTTEEEEEEEE-EE--CTCCE-TTTSE CS
  Lactamase_B_2  31 idaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfelgdggleitatparhksgrrldrnagdtl 126
                      a+l+th H DH+ g+ +l   ++k+  lya+       +++f    ++ +   +v+ +d g+ f++gd      ++++ h++g      +   l
     EGE26012.1  48 PSAILVTHHHDDHTGGVRDLLS-QYKNCALYAH------ANHGF----DDIP---KVNLVDEGDHFAVGDI-----CFQVWHTAGH-----TDSHL 119
                    468*******************.5666666654......44553....3333...5777889999999853.....6666677776.....66678 PP

                    EEEEECTTEEEEEESS- CS
  Lactamase_B_2 127 GlriegggkrvyyigDt 143
                    +++ e ++k+ +++gDt
     EGE26012.1 120 SYVTEIDQKTRVFCGDT 136
                    99999888888888888 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   6.3e-07    0.0016      10      84 ..      18     112 ..      10     141 .. 0.77
   2 ?   -2.7   0.0       1.9   4.8e+03      67      79 ..     171     183 ..     148     213 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.3e-07
  Lactamase_B_3  10 flletagarilvDPfka.nlgyeppa..eeaDlvlisqaledHahletlkql...................aenvkvleegeslevggleiravat 83 
                    +l+e + ++i++D ++  ++  + ++   ++ ++l++++++dH     ++ l                     +v++++eg++++vg++ ++  +t
     EGE26012.1  18 WLIENQMTTIIIDLGSSqEVLAYLQKnqLTPSAILVTHHHDDHTG--GVRDLlsqykncalyahanhgfddIPKVNLVDEGDHFAVGDICFQVWHT 111
                    9************997764444444334899*********99964..4444445569999999999999888888999999999999887766655 PP

  Lactamase_B_3  84 s 84 
                    +
     EGE26012.1 112 A 112
                    4 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.9
  Lactamase_B_3  67 egeslevggleir 79 
                    + ++++v +l++ 
     EGE26012.1 171 PAHEYTVSNLKFA 183
                    3334444433333 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.7e-05     0.069       3      71 ..      21      78 ..      19      99 .. 0.78
   2 ?   -2.7   0.0       1.3   3.4e+03     114     128 ..     178     192 ..     146     211 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
  Lactamase_B_6  3 eldnvkiLlDvGwdeskvslesalkelekviptvdliLLshatlehlGayallyakfksklllnipvya 71
                   e   ++i++D G++++      +l++l+k   t ++iL++h   +h G+   l+ ++     +n+  ya
     EGE26012.1 21 ENQMTTIIIDLGSSQE------VLAYLQKNQLTPSAILVTHHHDDHTGGVRDLLSQY-----KNCALYA 78
                   55567999****9975......6999****9******************87766554.....4555554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
  Lactamase_B_6 114 ktlkYsQklelkskl 128
                    ++lk+  ++ l ++ 
     EGE26012.1 178 SNLKFAKSVALDEHQ 192
                    344444444444333 PP

>> Ig_mannosidase  Ig-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00021      0.54      38      60 ..       9      31 ..       5      49 .. 0.80
   2 ?   -0.2   0.0      0.34   8.7e+02      18      35 ..     174     191 ..     163     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
  Ig_mannosidase 38 dgrFsdNgFdLlpgesktvtftv 60
                    +  F+dN+++L++++  t+ +  
      EGE26012.1  9 VLAFEDNYIWLIENQMTTIIIDL 31
                    567***************99877 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.34
  Ig_mannosidase  18 kvtlsadavAlfVwLels 35 
                     + t+s  ++A+ V L+ +
      EGE26012.1 174 EYTVSNLKFAKSVALDEH 191
                     568888999******933 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0014       3.5       9      52 ..      36      83 ..      35     126 .. 0.79
   2 ?    3.3   0.1     0.046   1.2e+02       7      41 ..     213     242 ..     207     255 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0014
  Glyco_tranf_2_4  9 eflahhlalgfd.rilvydndstDgt...railkelpevkllhvdksy 52
                     e+la++ ++  +   ++++++ +D t   r++l++++++ l+ + ++ 
       EGE26012.1 36 EVLAYLQKNQLTpSAILVTHHHDDHTggvRDLLSQYKNCALYAHANHG 83
                     57788877777646888889999988888*************998654 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.046
  Glyco_tranf_2_4   7 LpeflahhlalgfdrilvydndstDgtrailkelp 41 
                      Lp  lah ++     i v+ + ++D+ ++ l+++ 
       EGE26012.1 213 LPVSLAHERQ-----INVFLHACDDNKAKQLANQH 242
                      5555555544.....5899********99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2025.67
//
Query:       EGE26013.1  [L=396]
Description: phosphoserine aminotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-54  185.6   0.0    1.4e-54  185.4   0.0    1.0  1  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   0.0   8.1e-59   1.4e-54       3     371 .]      39     384 ..      37     384 .. 0.96

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 8.1e-59
                  EBTTTS----HHHHHHHHHHHHCTCCSSSS..SSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC-TTTSEEEEETTS CS
  Aminotran_5   3 ldsaAttqkpqeVldalqeyytdynanvhr..svhhlgkeatkaveearekvaelinaeseeeiiftsGtte.ainlvalslarslkpgdeivvteae 97 
                  ++ a+++  p +Vl+++q +  d+++ +++  +++h++++ +++ ++a++++++l+++++e+ ++f++G+++ ++++++l+l     +g  +++ e++
   EGE26013.1  39 NFCAGPASMPTAVLERAQAEMLDWQGLGTSvmEISHRSTDYIEMAQKAEANLRKLMGISDEYAVLFLQGGATlQFSAIPLNL----MNGGVADYLETG 132
                  6889**************************99*************************************9999*********....67********** PP

                  HGGGTHHHHHHHHHHTEEEEEEEBETTSCBE.....GGGHHHH--TTEEEEEEESBETTTTE.B--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHH CS
  Aminotran_5  98 hhanlvpwqelakrtgakvkvipldeegeld.....ldelekllnektklvaithvsnvtGt.iqpveeigklakkkgalvlvDaaqavghipidvkk 189
                   ++n  + +e+++ + + +  ++l + g+ +     +d+ +++l++ +++ +++ +++++G+ +++v+++          +++D+++ +++ pi v+k
   EGE26013.1 133 TWSNK-AYKEAKRYEALGLGQVNLVAAGSQTqfsdiPDPSTWQLTKGASYFHYCPNETIHGVqMFDVPKVD-------TPIVADMSSCILSEPISVDK 222
                  *****.*******************999999999999*************************9******98.......899***************** PP

                  HTESEEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHH.HCHHHHHHHHHHHHHHH CS
  Aminotran_5 190 lgvDflafsghKllgPtGiGvlyvrkellekleplllggemveevsl.eettfaeapskfeaGTpnvagiiglgaaleyl.eeigleaiekhekelae 285
                  +g+  ++++++K++gP+G++++++rk+lle++      +e   ++ + +++ +++++s+++  Tp + +++  g+++e+l e++g+eai+k ++++a+
   EGE26013.1 223 FGL--IYAGAQKNIGPAGLTLVIIRKDLLEQA------SE--YCPMVmNYKNQHTNDSMLN--TPSTYAWYLSGLVFEWLlEQGGVEAIAKVNHAKAK 308
                  ***..***************************......34..355555999999*******..*********************************** PP

                  HHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHT.TEEEEE..E-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 286 yllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdee.gIavrs..GhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                  +l+++++ ++ + +   +++++++si++++f+  + +  +++L+e+ +  +    Gh+ +          g++RaS+y++ t e+v++l
   EGE26013.1 309 TLYAAIDGSDFYHN---TVNPNHRSIMNVPFHLADDSLDKRFLEESkKAGLLNlkGHRAV----------GGMRASIYNAITLEQVQAL 384
                  ***********999...678*************************9999998889*****..........*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2874.34
//
Query:       EGE26014.1  [L=247]
Description: hypothetical protein EA1_05808 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1778.34
//
Query:       EGE26015.1  [L=250]
Description: peptidase M15A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-08   33.2   0.0    1.1e-07   32.0   0.0    1.6  1  Peptidase_M15_3  Peptidase M15
    0.00085   19.0   0.0      0.003   17.2   0.0    1.8  1  Peptidase_M15_2  Bacterial protein of unknown function (DUF88


Domain annotation for each model (and alignments):
>> Peptidase_M15_3  Peptidase M15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.2e-11   1.1e-07      47      89 ..     148     192 ..     140     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.2e-11
  Peptidase_M15_3  47 vvtSgyRseevnrkvGGatdsqHltgkAaDitvsgk..nkeelae 89 
                       + S yR +e+n+  GGa+ s+Hlt  A+Di+v +   ++++l+e
       EGE26015.1 148 QIRSVYRNPELNQCAGGAAMSKHLTNSAIDIWVPDLeiKSQALYE 192
                      689******************************987445555554 PP

>> Peptidase_M15_2  Bacterial protein of unknown function (DUF882)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.3e-07     0.003      72     153 .]     145     230 ..     127     230 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.3e-07
  Peptidase_M15_2  72 eeiqvvsgyrsPatnallrsrskgvakksyhmlGkaidfrldgvklkk..lreialkl.....qvG.....GvGyyPksgspfvhvdvGpvrkW 153
                      ++ q+ s yr P+ n+       g a  s+h++  aid+ ++++++k   l e+  +l     + G     G+G y +     +h+d+ + rkW
       EGE26015.1 145 ANTQIRSVYRNPELNQ-----CAGGAAMSKHLTNSAIDIWVPDLEIKSqaLYELQNRLcqywlEHGenqnfGLGLYATGA---IHLDTQGFRKW 230
                      4567778888888775.....4677889***************998742233333222111224444444499***9977...*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1891.14
//
Query:       EGE26016.1  [L=31]
Description: hypothetical protein EA1_05818 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       174  (0.00970495); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 258.37
//
Query:       EGE26017.1  [L=189]
Description: RplA-like rare lipoprotein A family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-20   72.7   0.1    3.7e-20   72.0   0.1    1.3  1  DPBB_1           Lytic transglycolase
     0.0094   16.0   0.6      0.055   13.5   0.1    2.0  2  Molydop_binding  Molydopterin dinucleotide binding domain


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.1   4.1e-24   3.7e-20       2      81 ..      99     185 ..      98     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 4.1e-24
                 EEEEEEE-.CCC....-TTSSB--TTS-EEE-SSS-TT-EEEE..TT.--EEEEEEEE----STTECEEE-HHHHHHHT-T.TTS-EEE CS
      DPBB_1   2 aagsasly.kdg....tacGecyevkcltaahktlplgtycrv..ls.gksvtVtitDrgpfppgrhiDLSkaAfeklakp.raGvipV 81 
                 ++g as+y +++    ta+Ge +++++ltaah++lp+++ +rv  ++ gksv+V+i+Dr     +r++DLS+ A+++++++ + G++ +
  EGE26017.1  99 QNGIASWYgRQFhgrkTASGETFDMNALTAAHSSLPMNCHVRVtnRDnGKSVVVKINDRPK--TNRVLDLSYGAAQAIGMTgNVGNVTI 185
                 689*****75558899***************************97668**********966..79***************966687765 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.063   5.6e+02       8      35 ..      36      63 ..      33      69 .. 0.82
   2 !   13.5   0.1   6.1e-06     0.055      28      99 ..     116     189 .]      98     189 .] 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.063
                     BTTBSTTTTTCGCCHHHHCSSS-EEEEE CS
  Molydop_binding  8 sldqlhsqtrtrpvlrlakpepevvein 35
                     +l+ql +q+++ ++l +++++p+ + +n
       EGE26017.1 36 VLQQLTTQHNNASSLVKSARQPASLALN 63
                     5789999999999999999999666655 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.1e-06
                      SS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TT.EEEEESSHCC.....S-GHCTS--SCS CS
  Molydop_binding  28 ep.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpG.vvfmpfgwweagekggnaNaltddatd 99 
                      ++ e+  +n+ +Aa+  +  +  V+v++r     v +k+++r +   v+ + +g+ +a++  gn+ ++t +++d
       EGE26017.1 116 ASgETFDMNALTAAHSSLPMNCHVRVTNRDNGKSVVVKINDRPKTNrVLDLSYGAAQAIGMTGNVGNVTIERID 189
                      3335889***********************************87661556999999999999999999977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1550.80
//
Query:       EGE26018.1  [L=246]
Description: ABC transporter ATPase subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-29  100.8   0.0    1.1e-28  100.4   0.0    1.2  1  ABC_tran     ABC transporter
    3.2e-05   23.9   1.6       0.03   14.1   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00014   21.5   0.3    0.00031   20.4   0.3    1.6  1  AAA_29       P-loop containing region of AAA domain
    0.00029   20.8   0.2    0.00075   19.4   0.1    1.7  2  RsgA_GTPase  RsgA GTPase
     0.0022   18.2   0.4      0.039   14.1   0.4    2.1  1  AAA_33       AAA domain
     0.0042   16.6   0.3       0.22   10.9   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0057   16.7   0.3      0.014   15.5   0.2    1.7  2  MMR_HSR1     50S ribosome-binding GTPase
     0.0067   16.8   0.0     0.0095   16.3   0.0    1.3  1  AAA_16       AAA ATPase domain
      0.007   16.6   0.1        4.6    7.5   0.0    2.4  2  Roc          Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.049   12.8   0.7      0.098   11.8   0.7    1.7  1  NB-ARC       NB-ARC domain
       0.13   12.8   0.4        4.6    7.8   0.2    2.1  2  AAA_18       AAA domain
       0.18   11.4   0.1       0.48   10.0   0.0    1.7  2  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.0   7.6e-32   1.1e-28       2     136 ..      24     162 ..      23     163 .. 0.89

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 7.6e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 + ++lk+ +g++v ivG +G GKStL+++ agl  p  G++ +dgk+++      ++  +g++ q++ l p +tv++n             e  ++i+ 
  EGE26018.1  24 DGLNLKVAQGSVVSIVGASGVGKSTLFNIAAGLIYPSHGQVMIDGKNVTG-----TSGYVGYMLQKDLLLPYKTVYDNialplmlshktkqEIAAQIQP 117
                 789********************************************999.....99*****************************9755555555666 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  l+ +gl++l+++     p++LSgGq+qrval r+ l++++l+llDEp+
  EGE26018.1 118 NLTIFGLDGLTKKY----PNQLSGGQRQRVALLRTYLSNRELMLLDEPF 162
                 66666666655555....5*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.6   0.00076       1.1       3      22 ..      37      56 ..      35      80 .. 0.84
   2 !   14.1   0.0     2e-05      0.03     209     298 ..     107     194 ..      81     197 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00076
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                 ++G+ g+GKS+L+ +  +l
  EGE26018.1 37 SIVGASGVGKSTLFNIAAGL 56
                59************999888 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2e-05
      AAA_21 209 iasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP...kllrrllellkelsrngaQviltTHS 298
                  + ++ ++++ +++++  ++  +  +++lS G+++  all  +l+ +    l l+DEp + L+    + +++ ++ ++++++    +++ TH+
  EGE26018.1 107 TKQEIAAQIQPNLTIFGLDGLTKKYPNQLSGGQRQRVALLRTYLSNR---ELMLLDEPFSALDFvtkADMHEWFGQFRQANQ--LTCLIITHD 194
                 45555555555666666666666778999*****9999999999999...9*************665555777777788877..********8 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.3   2.1e-07   0.00031      12      50 ..      23      61 ..      21      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.1e-07
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                fdg  +++ + +++ ++G+sG+GKSTl+   + l++p++
  EGE26018.1 23 FDGLNLKVAQGSVVSIVGASGVGKSTLFNIAAGLIYPSH 61
                888889998555****************99999999987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1     5e-07   0.00075      90     119 ..      23      53 ..       4      74 .. 0.77
   2 ?   -2.9   0.0       3.7   5.5e+03      72      97 ..      94     119 ..      86     129 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5e-07
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinal 119
                  ++ l+ ++++ +++ +vG SGvGKStL n  
   EGE26018.1  23 FDGLNLKVAQgSVVSIVGASGVGKSTLFNIA 53 
                  555655555549999*************975 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.7
                  HHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  72 lealgyevllvsaktkegleelkell 97 
                  + ++ ++++l +++++e +++++++l
   EGE26018.1  94 YDNIALPLMLSHKTKQEIAAQIQPNL 119
                  55665555555444444444454444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.4   2.6e-05     0.039       1     107 [.      35     194 ..      35     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
      AAA_33   1 lvllvGlpGsGKstl...aerl.lkklgavllssdt..............................................lrrrlfgtdqqsktdyt 49 
                 +v +vG++G+GKstl   a +l +  +g v ++  +                                                 ++fg d  +k++++
  EGE26018.1  35 VVSIVGASGVGKSTLfniAAGLiYPSHGQVMIDGKNvtgtsgyvgymlqkdlllpyktvydnialplmlshktkqeiaaqiqPNLTIFGLDGLTKKYPN 133
                 7889**********9333445533344488888888899999999999999999999999999999998888777755554322245557777777989 PP

      AAA_33  50 rvldrlyqilnelarkalsagrnvildat.....nlsrrerarflklarrlgvpvrivvvetd 107
                 +++   +q++ +l+r +ls +  ++ld +     +++++++ +++  +r+++ + ++++++ d
  EGE26018.1 134 QLSGGQRQRV-ALLRTYLSNRELMLLDEPfsaldFVTKADMHEWFGQFRQAN-QLTCLIITHD 194
                 9999999998.99****************88888888999999999999888.6666655544 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.5     0.029        43      24      41 ..      33      50 ..      25      55 .. 0.86
   2 !   10.9   0.0   0.00015      0.22     135     198 ..     123     194 ..      52     209 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.029
                SSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnll 41
                 s+ +ivG+ G GKs l+
  EGE26018.1 33 GSVVSIVGASGVGKSTLF 50
                56889**********987 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00015
                 T..........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE..EEE-SS CS
                 x..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx RF
       SMC_N 135 e..........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf..ivislr 198
                            +LSgG+++ va  Ll      + + l+llDe  +aLD+   + + e + + ++  Q+  ++i+++
  EGE26018.1 123 GldgltkkypnQLSGGQRQRVA--LL--RTYLSNRELMLLDEPFSALDFVTKADMHEWFGQFRQANQLtcLIITHD 194
                 055555555559******9665..45..356677789***********************9988888622556654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   9.4e-06     0.014       2      20 ..      36      54 ..      35      82 .. 0.87
   2 ?   -1.8   0.0       2.1   3.2e+03      65      75 ..     144     154 ..     103     201 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.4e-06
                EEEEESTTSSHHHHHHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStLinalt 20
                v ivG + vGKStL+n   
  EGE26018.1 36 VSIVGASGVGKSTLFNIAA 54
                78**************765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.1
                 HHHHHHHHHHC CS
    MMR_HSR1  65 glgkaflalee 75 
                  l +++l+++e
  EGE26018.1 144 ALLRTYLSNRE 154
                 45555554444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.4e-06    0.0095      20      72 ..      31      93 ..      22     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.4e-06
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesa...........ipysal 72
                ++g  ++v ++G+sGvGKs+l + ++  +  ++g + + gk++  +s+           +py ++
  EGE26018.1 31 AQG--SVVSIVGASGVGKSTLFNIAAGLIYPSHGQVmIDGKNVTGTSGyvgymlqkdllLPYKTV 93
                444..799**************9999999999888889999888866665666665566555444 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0031       4.6       2      17 ..      36      51 ..      35      67 .. 0.90
   2 !    7.0   0.0    0.0043       6.5      64     114 ..     137     191 ..     105     197 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0031
                EEEESSTTSSHHHHHH CS
         Roc  2 vvlvGdsgvGKtsllk 17
                v +vG sgvGK++l++
  EGE26018.1 36 VSIVGASGVGKSTLFN 51
                579***********87 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0043
                 -SGGCTTTT-HHHHCTSCEEEE.....EEEGHHHHCHHHHHHHHHHHCSSS-EEEE CS
         Roc  64 aGqerfrslhplylreaalail.....vydsrssenlkeWlkelkkvagkspvilv 114
                 +Gq +  +l + yl++++l++l      +d  ++++++eW+ ++++ ++ +++i +
  EGE26018.1 137 GGQRQRVALLRTYLSNRELMLLdepfsALDFVTKADMHEWFGQFRQANQLTCLI-I 191
                 68999999*************9433223456678999*******9976655444.4 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   6.6e-05     0.098      20      38 ..      33      51 ..      22     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.6e-05
                SEEEEEEESTTSSHHHHHH CS
      NB-ARC 20 slvvalvGmgGvGKttlak 38
                  vv++vG  GvGK+tl++
  EGE26018.1 33 GSVVSIVGASGVGKSTLFN 51
                469**************86 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0031       4.6       3      16 ..      38      51 ..      36      72 .. 0.85
   2 ?    3.1   0.0     0.087   1.3e+02      25      92 ..     143     221 ..     108     242 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0031
      AAA_18  3 ltGtpGvGKttlak 16
                + G++GvGK+tl +
  EGE26018.1 38 IVGASGVGKSTLFN 51
                89*********976 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.087
      AAA_18  25 gvnlrdvakenglllevdpe.aldeskrldedkldklldaleenss.............aleegknlvidghlaeleseaak 92 
                 +  lr ++++++l l ++p+ a    + + +  +++++ +++++++              + + +++v+ g +a +  + ++
  EGE26018.1 143 VALLRTYLSNRELMLLDEPFsA---LDFVTKADMHEWFGQFRQANQltcliithdideaIYLSDEVYVLKGMPAMFTHHFWV 221
                 5668899999999999999954...444455555559999999988777777777777755556666777777766666555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00032      0.48      29      49 ..      29      49 ..       2      56 .. 0.75
   2 ?   -2.3   0.0       1.8   2.7e+03      61      79 ..     174     193 ..     164     200 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00032
      AAA_25 29 llpagelallaGapgtGKttl 49
                 ++ g+++ ++Ga+g+GK+tl
  EGE26018.1 29 KVAQGSVVSIVGASGVGKSTL 49
                4678****************8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
      AAA_25  61 kpwlgpvap.eqgkVlyvsa 79 
                 ++w+g+++   q ++l++  
  EGE26018.1 174 HEWFGQFRQaNQLTCLIITH 193
                 45555444435555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.31s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1725.34
//
Query:       EGE26019.1  [L=327]
Description: ABC transporter substrate binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-57  195.5   0.2    1.5e-57  195.1   0.2    1.2  1  NMT1      NMT1/THI5 like
     0.0019   17.9   0.0     0.0095   15.6   0.0    2.0  2  NMT1_2    NMT1-like family


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.1   0.2   1.6e-61   1.5e-57       1     215 [.      48     255 ..      48     256 .. 0.97

  Alignments for each domain:
  == domain 1  score: 195.1 bits;  conditional E-value: 1.6e-61
                 -GGGHHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE- CS
        NMT1   1 npnhaglyvAkekGYFkeeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyv 99 
                 n+nh+glyvA ++GYFke+G d +iv+p++  ++ +lva+  adfgv+ q++++ +  kg p+++vaa+ q++  gl++l++ g ++p+DL+Gkr+ ++
  EGE26019.1  48 NTNHTGLYVALDQGYFKEAGFDAKIVQPSE-DSTSTLVANKRADFGVYFQPNMVKRLNKGEPITAVAAITQHSSAGLLSLAKLGADKPQDLQGKRYSTW 145
                 89**************************99.999***************************************************************** PP

                 S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT--.---SEEEEEEHHHHHH-HHHHHH CS
        NMT1 100 gspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvp.dyyslvlitnekllkenpelvkk 197
                 ++p+++a++++++ +       ++ ++ + t++++al  +++D ++ +y+ w+g++++ +g+++++f+l+d ++  dyy+++li+n++ lk++pe+ kk
  EGE26019.1 146 EDPVDDAVVEQIVGT------PLKKIPGESTDATTALRMNQFDYIM-AYYSWDGIHADIKGVDTNFFYLKDADPIfDYYAPLLIANNDELKNHPEKYKK 237
                 ***********9965......4678899999*99***********9.***************************9************************ PP

                 HHHHHHHHHHHHHHSHHH CS
        NMT1 198 FlrAlkkGyeyalahPee 215
                  l+A+k+Gy ya+ hP+e
  EGE26019.1 238 ALAAIKQGYLYAAHHPNE 255
                 ****************98 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-06    0.0095       9      86 ..      42     114 ..      32     156 .. 0.79
   2 ?   -0.4   0.0     0.085   7.6e+02     102     141 ..     226     263 ..     218     266 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-06
      NMT1_2   9 klGfialtdaaplvvakekglfakeGltvelekqaswaelrdkllagelDaahv.ltpapllidlGiggakadmkvlas 86 
                  l ++++t+++ l va ++g+f++ G +   + q s  ++++ +++ + D ++   + ++  +++G      ++ ++a+
  EGE26019.1  42 ALDWVPNTNHTGLYVALDQGYFKEAGFD-AKIVQPSEDSTSTLVANKRADFGVYfQPNMVKRLNKGE-----PITAVAA 114
                 56699***********************.56789******************995666666666665.....4444444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.085
      NMT1_2 102 dkkvsdakalkdlvakkkaskplkiavtfpgsthdlllry 141
                 d+ +   +++k+++a+ k+  ++  a+++p    ++l++y
  EGE26019.1 226 DELKNHPEKYKKALAAIKQ--GYLYAAHHPNESAEILVKY 263
                 4555667777777777777..7777777887777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2266.91
//
Query:       EGE26020.1  [L=250]
Description: ABC transporter permease protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-23   83.3  15.8    1.7e-23   83.3  15.8    2.3  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        2.5    8.0   8.4       0.33   10.9   3.1    2.1  2  DUF5453       Family of unknown function (DUF5453)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   4.7      0.13   1.1e+03     154     177 ..      53      82 ..       4      86 .. 0.51
   2 !   83.3  15.8   1.9e-27   1.7e-23       3     179 ..      76     243 ..      66     244 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.13
  BPD_transp_1 154 s......nggvlalviavlllnlvadilqr 177
                   +       +++++++++ l+l++v+ il++
    EGE26020.1  53 AhhakytLATAFIGTVIGLALSFVLSILMD 82 
                   033333445666666666666666666665 PP

  == domain 2  score: 83.3 bits;  conditional E-value: 1.9e-27
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifr 99 
                   +l+il+    ++ +++ ++pli + +++P++++a+llv       +lg++ilp ++l++ls ++++++   ++ rs+++d  ++++ + a+  q++r
    EGE26020.1  76 VLSILMD--LSRNFRQSVYPLILLNQTIPTIAIAPLLV------IWLGYGILPKVVLVVLSVFFPMTIALLDGYRSVSTDELNLFYSMKANIYQTYR 164
                   4455555..88899************************......9**************************************************** PP

  BPD_transp_1 100 kvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrll 179
                   +  +P+a+ +++tgl +a+ ++l  av++e+lg++ Glg  ++++  +y ++++  ++++ + +++l+l++++ +l r++
    EGE26020.1 165 HLKIPSAMGYFFTGLKVALSYALISAVVAEWLGGYYGLGVYMTRVRKSYELDNMF-AVIFLISFLTLALIALVKWLERHV 243
                   ****************************************************999.999999999999999999998875 PP

>> DUF5453  Family of unknown function (DUF5453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.1   3.7e-05      0.33      36     131 ..      52     154 ..      40     161 .. 0.81
   2 ?   -1.2   0.2      0.18   1.7e+03      43      64 ..     218     238 ..     171     250 .] 0.56

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.7e-05
     DUF5453  36 vtlqariliitallGvvlgivlyf.....fdvkfflkdypykkfhfdkkytrvylsGvivfll..nillgvlllvllvnfltnqileekysllltnalp 127
                  + +a++ + ta++G+v+g +l f     +d+   ++   y     ++   ++ ++ ++v +l   il  v+l+vl+v+f     l + y  + t  l+
  EGE26020.1  52 LAHHAKYTLATAFIGTVIGLALSFvlsilMDLSRNFRQSVYPLILLNQTIPTIAIAPLLVIWLgyGILPKVVLVVLSVFFPMTIALLDGYRSVSTDELN 150
                 5778899999*********99865222225666667777888888999999999999988775236999***********9999999************ PP

     DUF5453 128 llys 131
                 l+ys
  EGE26020.1 151 LFYS 154
                 *998 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.18
     DUF5453  43 liitallGvvlgivlyffdvkf 64 
                 ++   +l   l+ +l+ + vk+
  EGE26020.1 218 MFAVIFLISFLTLALIAL-VKW 238
                 333333333333333333.344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       948  (0.0528752); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1914.04
//
Query:       EGE26021.1  [L=102]
Description: hypothetical protein EA1_05843 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-15   56.3   0.7    4.8e-15   56.0   0.7    1.0  1  DDE_Tnp_IS1  IS1 transposase


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1  IS1 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.7   2.7e-19   4.8e-15      26     113 ..       7      94 ..       4     101 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 2.7e-19
  DDE_Tnp_IS1  26 aydrkrktvlayvfgertdetlrellallspfdvviltsddwglyerelkkdkhliskiytqriernnltlrtrlkrlarkslsfsks 113
                  a d+  k +l +v g+  ++t ++l   l   ++ ++ sd w +y + + k kh++sk  t  ie  n  +r+ ++r++rks ++sk 
   EGE26021.1   7 AIDTNSKQILGFVCGKTDTNTFKRLYQQLNTHNIQLFFSDYWKSYRQVILKPKHITSKAQTFTIEGYNSLIRHFIARFTRKSKCYSKY 94 
                  78999*********************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 763.39
//
Query:       EGE26216.1  [L=118]
Description: ubiquitous surface protein A1 UspA1, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-15   55.3   6.8    4.4e-15   55.3   6.8    4.3  4  DUF1079         Repeat of unknown function (DUF1079)
     0.0021   18.5   5.1         12    6.5   0.0    3.5  4  DUF2664         Protein of unknown function (DUF2664)
     0.0073   15.2  10.1     0.0077   15.1  10.1    1.0  1  Spc7            Spc7 kinetochore protein
  ------ inclusion threshold ------
      0.019   15.2   0.2        1.6    9.1   0.1    2.4  3  DUF2889         Protein of unknown function (DUF2889)
      0.082   12.9   0.1        7.8    6.5   0.0    2.3  2  HTH_1           Bacterial regulatory helix-turn-helix protein
      0.083   12.9   3.6       0.34   11.0   2.5    2.1  2  DUF1664         Protein of unknown function (DUF1664)
      0.086   12.8   5.1        1.6    8.7   1.2    2.9  2  Nas2_N          Nas2 N_terminal domain
       0.15   12.5   1.6         20    5.7   0.0    3.0  3  Saccharop_dh_N  LOR/SDH bifunctional enzyme conserved region
       0.16   11.9   1.1         22    5.0   0.0    2.7  3  DUF5408         Family of unknown function (DUF5408)
        1.2    9.3   7.3         54    4.0   7.3    2.7  1  Fib_alpha       Fibrinogen alpha/beta chain family
        8.2    5.7  10.6         13    5.0  10.6    1.4  1  DUF4407         Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> DUF1079  Repeat of unknown function (DUF1079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.5      0.11   1.8e+02       7      22 ..       7      21 ..       6      23 .. 0.88
   2 ?    2.5   0.5      0.11   1.8e+02       7      22 ..      36      50 ..      35      52 .. 0.88
   3 ?    0.9   3.7      0.35   5.7e+02       8      23 ..      76      90 ..      67      91 .. 0.78
   4 !   55.3   6.8   2.7e-18   4.4e-15       1      30 [.      89     118 .]      89     118 .] 0.98

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
     DUF1079  7 LadQydkkssDAIdaL 22
                L dQ +    D I+aL
  EGE26216.1  7 LIDQKADLTKD-IKAL 21
                6799999999*.***9 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.11
     DUF1079  7 LadQydkkssDAIdaL 22
                L dQ +    D I+aL
  EGE26216.1 36 LIDQKADLTKD-IKAL 50
                6799999999*.***9 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.35
     DUF1079  8 adQydkkssDAIdaLa 23
                +   ++ ++D I+ La
  EGE26216.1 76 QADIAQNQTD-IQDLA 90
                55569*****.99887 PP

  == domain 4  score: 55.3 bits;  conditional E-value: 2.7e-18
     DUF1079   1 ladiyELadQydkkssDAIdaLaKASaeNT 30 
                 la ++EL+dQy++k++ AIdaL+KAS+eNT
  EGE26216.1  89 LAAYNELQDQYAQKQTEAIDALNKASSENT 118
                 789**************************9 PP

>> DUF2664  Protein of unknown function (DUF2664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.011        17      50      69 ..       3      22 ..       1      29 [. 0.87
   2 !    6.5   0.0    0.0071        12      50      69 ..      32      51 ..      23      60 .. 0.85
   3 ?    2.9   0.2     0.092   1.5e+02      50      72 ..      61      83 ..      54      88 .. 0.84
   4 ?    4.6   2.3     0.028        46      38      74 ..      77     113 ..      65     117 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.011
     DUF2664 50 laafLdkqkaalrvelkalk 69
                l+++L +qka l ++ kal 
  EGE26216.1  3 LSGHLIDQKADLTKDIKALE 22
                89***********9999875 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0071
     DUF2664 50 laafLdkqkaalrvelkalk 69
                l+++L +qka l ++ kal 
  EGE26216.1 32 LSGHLIDQKADLTKDIKALE 51
                89***********9999875 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.092
     DUF2664 50 laafLdkqkaalrvelkalkqLe 72
                l++ L++qka + +++  + q +
  EGE26216.1 61 LSGRLLDQKADIAKNQADIAQNQ 83
                7999*******999998888755 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.028
     DUF2664  38 edtaesqrvisslaafLdkqkaalrvelkalkqLekl 74 
                  d a++q  i+ laa+ + q  + +++ +a+  L+k 
  EGE26216.1  77 ADIAQNQTDIQDLAAYNELQDQYAQKQTEAIDALNKA 113
                 3567889999*******99999999999999999876 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1  10.1   4.7e-06    0.0077     143     259 ..       6     116 ..       1     118 [] 0.62

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.7e-06
        Spc7 143 gleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelke 241
                  l ++ ++l++d + Le++      + + l e    l ++ ++l +  + les  +e L  l  +l ++ka+i++ ++++a+ q+++++l++  e  ++
  EGE26216.1   6 HLIDQKADLTKDIKALESN------VEEGLLELSGHLIDQKADLTKDIKALESNVEEGLLDLSGRLLDQKADIAKNQADIAQNQTDIQDLAAYNELQDQ 98 
                 4445555555555555443......33444444445555555555555555555566888888888888888888888888888888888887777777 PP

        Spc7 242 qkseleeeiaeaervlee 259
                   ++  e+i + ++   e
  EGE26216.1  99 YAQKQTEAIDALNKASSE 116
                 777777777777776555 PP

>> DUF2889  Protein of unknown function (DUF2889)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.1   5.1e+03      18      30 ..       2      14 ..       1      21 [. 0.72
   2 ?    4.8   0.0      0.02        33      10      31 ..      23      44 ..      14      53 .. 0.75
   3 ?    9.1   0.1   0.00099       1.6      10      56 ..      52      98 ..      43     110 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.1
     DUF2889 18 dveaelrDskaed 30
                ++ ++l D+ka+ 
  EGE26216.1  2 ELSGHLIDQKADL 14
                6778999998764 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.02
     DUF2889 10 yeredglldveaelrDskaedv 31
                 + e+gll++ ++l D+ka+ +
  EGE26216.1 23 SNVEEGLLELSGHLIDQKADLT 44
                45599************98755 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00099
     DUF2889 10 yeredglldveaelrDskaedvelaekelkagepvHelrlrltvddt 56
                 + e+glld+ ++l D+ka+  +++++  ++++ +++l+   +++d+
  EGE26216.1 52 SNVEEGLLDLSGRLLDQKADIAKNQADIAQNQTDIQDLAAYNELQDQ 98
                45599*************99999999999999999999877777665 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0048       7.8      30      51 ..      14      35 ..       8      46 .. 0.80
   2 ?    5.2   0.0     0.013        21      30      51 ..      43      64 ..      36      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0048
                HHHHHHHHHHHHTS-SEEESSS CS
       HTH_1 30 vsrqikrLEeelgvpLfeRtgr 51
                +++ ik+LE+ +++ L+e +g+
  EGE26216.1 14 LTKDIKALESNVEEGLLELSGH 35
                7899**************9776 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
                HHHHHHHHHHHHTS-SEEESSS CS
       HTH_1 30 vsrqikrLEeelgvpLfeRtgr 51
                +++ ik+LE+ +++ L++ +gr
  EGE26216.1 43 LTKDIKALESNVEEGLLDLSGR 64
                7899*************98776 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.025        41      53      77 ..       3      27 ..       1      29 [. 0.87
   2 ?   11.0   2.5   0.00021      0.34      43     108 ..      22      88 ..      15     103 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.025
     DUF1664 53 vseslaatkrhLssridrvdkklde 77
                +s +l ++k +L+++i+ ++++++e
  EGE26216.1  3 LSGHLIDQKADLTKDIKALESNVEE 27
                5677889*************99987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00021
     DUF1664  43 vesvskqleqvseslaatkrhLssridrvdkklde.qkeiskeikeevtevredlseigedvesvke 108
                  ++v + l ++s +l ++k +L+++i+ ++++++e   ++s  + ++ +++ ++ ++i ++ + +++
  EGE26216.1  22 ESNVEEGLLELSGHLIDQKADLTKDIKALESNVEEgLLDLSGRLLDQKADIAKNQADIAQNQTDIQD 88 
                 578999999************************9834678877766666665555555555555544 PP

>> Nas2_N  Nas2 N_terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0012       1.9       3      36 ..       6      39 ..       5      41 .. 0.92
   2 ?    8.7   1.2   0.00099       1.6       3      36 ..      35      68 ..      33     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
      Nas2_N  3 eLekkkdeiekeieelsevLesqnvgmdgplvDe 36
                +L ++k+++ k+i++l++  e+  ++++g l+D+
  EGE26216.1  6 HLIDQKADLTKDIKALESNVEEGLLELSGHLIDQ 39
                6899***************************997 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00099
      Nas2_N  3 eLekkkdeiekeieelsevLesqnvgmdgplvDe 36
                +L ++k+++ k+i++l++  e+  ++++g+l+D+
  EGE26216.1 35 HLIDQKADLTKDIKALESNVEEGLLDLSGRLLDQ 68
                6999****************************97 PP

>> Saccharop_dh_N  LOR/SDH bifunctional enzyme conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.023        37       5      14 ..       2      11 ..       1      22 [. 0.88
   2 ?    5.7   0.0     0.012        20       4      14 ..      30      40 ..      27      54 .. 0.87
   3 ?   -1.2   0.0       1.7   2.7e+03       5      14 ..      60      69 ..      57      87 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.023
                    EEEEXXTTSS CS
  Saccharop_dh_N  5 eleGhliDsg 14
                    el+GhliD+ 
      EGE26216.1  2 ELSGHLIDQK 11
                    89******85 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.012
                    EEEEEXXTTSS CS
  Saccharop_dh_N  4 veleGhliDsg 14
                    +el+GhliD+ 
      EGE26216.1 30 LELSGHLIDQK 40
                    79*******85 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.7
                    EEEEXXTTSS CS
  Saccharop_dh_N  5 eleGhliDsg 14
                     l+G l+D+ 
      EGE26216.1 60 DLSGRLLDQK 69
                    5788888874 PP

>> DUF5408  Family of unknown function (DUF5408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.014        22      41      55 ..      11      25 ..       7      31 .. 0.85
   2 ?    4.8   0.0     0.015        25      41      55 ..      40      54 ..      36      57 .. 0.85
   3 ?   -2.1   0.0       2.2   3.6e+03      51      61 ..      66      76 ..      63      81 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.014
     DUF5408 41 tAalskeikiLeekv 55
                 A l k+ik+Le  v
  EGE26216.1 11 KADLTKDIKALESNV 25
                699*********877 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.015
     DUF5408 41 tAalskeikiLeekv 55
                 A l k+ik+Le  v
  EGE26216.1 40 KADLTKDIKALESNV 54
                699*********876 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.2
     DUF5408 51 Leekvlilekk 61
                L++k  i +++
  EGE26216.1 66 LDQKADIAKNQ 76
                67777776665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   7.3     0.033        54      27     128 ..       8      96 ..       2     117 .. 0.44

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.033
                 CCCCCCCCHHHCCCCCCCCC..CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  27 lkyekdvkkdleklenelee..isnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeq 123
                  +++ d++kd++ le+++ee  ++ s + +++                   ++ ik +++++ee  l+l  ++ +q   i + q  + +n+ +iq+L  
  EGE26216.1   8 IDQKADLTKDIKALESNVEEglLELSGHLIDQKADL---------------TKDIKALESNVEEGLLDLSGRLLDQKADIAKNQADIAQNQTDIQDLAA 91 
                 455555555555555555442122222223333333...............344444444444444444444444444444444444444444444443 PP

                 HHHHH CS
   Fib_alpha 124 didqk 128
                   + +
  EGE26216.1  92 YNELQ 96 
                 33322 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  10.6    0.0081        13     145     232 ..      14     112 ..       4     118 .] 0.45

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0081
     DUF4407 145 lqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake...........kkaqldaaqaelaelkakldatarlaalraelaeleaerakeraa 232
                 l + i+a+e+ +++   e+  +l  +k + t+ ++  + + +e            ka++++ qa++a+ +++++  a+ ++l++++a+ ++e++++ ++
  EGE26216.1  14 LTKDIKALESNVEEGLLELSGHLIDQKADLTKDIKALESNVEEglldlsgrlldQKADIAKNQADIAQNQTDIQDLAAYNELQDQYAQKQTEAIDALNK 112
                 444444444444444444444433333333333333333333333333333433555666666666666666556666666666666655555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1199  (0.0668749); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 833.38
//
Query:       EGE26217.1  [L=60]
Description: ubiquitous surface protein A1 UspA1, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-11   42.6   2.3    4.2e-11   42.6   2.3    1.8  2  DUF1079   Repeat of unknown function (DUF1079)
  ------ inclusion threshold ------
      0.045   12.6   2.1      0.047   12.6   2.1    1.0  1  Spc7      Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> DUF1079  Repeat of unknown function (DUF1079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.87   7.8e+03       9      12 ..      21      24 ..      19      27 .. 0.50
   2 !   42.6   2.3   4.7e-15   4.2e-11       1      23 [.      30      51 ..      30      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.87
     DUF1079  9 dQyd 12
                dQ +
  EGE26217.1 21 DQKA 24
                4433 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 4.7e-15
     DUF1079  1 ladiyELadQydkkssDAIdaLa 23
                +++iyELa+Q+d++ssD I++L 
  EGE26217.1 30 INNIYELAQQQDQHSSD-IKTLK 51
                8****************.****4 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.1   5.3e-06     0.047     193     244 ..       4      55 ..       1      58 [. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.3e-06
        Spc7 193 lesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqks 244
                 le+  +eeL +l  +l ++ka+i++  +++ el +q ++ +++i++lk+  +
  EGE26217.1   4 LENNVEEELLNLSGRLLDQKADIDNNINNIYELAQQQDQHSSDIKTLKAMSK 55 
                 6777789***************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1339  (0.0746835); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 451.58
//
Query:       EGE26249.1  [L=349]
Description: glucosyltransferase Lgt1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-11   41.9   0.0    1.2e-10   41.2   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    4.8e-10   40.0   0.0    8.3e-10   39.2   0.0    1.3  1  Glyco_trans_1_4  Glycosyl transferases group 1
    0.00021   21.3   3.4       0.06   13.3   3.4    2.6  1  Glyco_transf_4   Glycosyltransferase Family 4
  ------ inclusion threshold ------
       0.05   13.1   0.1      0.093   12.2   0.1    1.4  1  DDE_Tnp_IS66     Transposase IS66 family


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   2.7e-14   1.2e-10      70     154 ..     219     301 ..     170     316 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2.7e-14
                      CTTCGGGEEECCHSSSHHHHHHCESEEEEEESS.BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHH CS
  Glycos_transf_1  70 elsdnviflgevsredleellknadifvlpsis.EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairk 154
                       ls +++f+g v   ++ el+ n+ ++++p  + E+fG++++E++++g+pv+a+  g ++++v++++ Gll +++  + l+ea+++
       EGE26249.1 219 YLSSRLHFHGMVGGVKKNELIANSQALIFPVLWhEPFGLAVIESLYLGCPVFATPFGAMSDIVTQEV-GLLSDSY--AVLSEALKD 301
                      5778999999999999***************************************************.****999..555555554 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.9e-13   8.3e-10      14     124 ..     185     295 ..     172     304 .. 0.76

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.9e-13
                      .GTHHHHHHHHHHHH.HHEEEEEES---..HHHHHHHT.T-T.TEEEE---..THHHHHHHH-SEEEE--...---SHHHHHHHHTT-EEEE-T CS
  Glyco_trans_1_4  14 vkgvdllleavpllrkkdvrlvivGdgprpeeleelaa.gleerveftGfv..edlaellaaadvfvaPs...egfglkllEamaaglpvVatd 101
                      +k+++  ++ +++       l+i G g+r  ++++     l++r +f+G v   +++el+a+++ +++P    e fgl+++E++ +g+pv at+
       EGE26249.1 185 IKNLQGAVRIAKKAN---KPLHILG-GNRF-NIRRNPYcYLSSRLHFHGMVggVKKNELIANSQALIFPVlwhEPFGLAVIESLYLGCPVFATP 273
                      444444444444444...35*****.6343.666433257889********9778*****************99******************** PP

                      GGGTTT--.TTSSEE--TT-HHHH CS
  Glyco_trans_1_4 102 vggiaevv.gengllvppgdpeal 124
                       g+++++v +e gll +  + + l
       EGE26249.1 274 FGAMSDIVtQEVGLLSD--SYAVL 295
                      *99*****999999986..34444 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   3.4   1.3e-05      0.06       1     109 [.      51     137 ..      51     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrl 95 
                     +GG er+++ L ++  ++Gh+V+++  +   ++++                    + +  ++ l ++++    D vH h+p+ +          l
      EGE26249.1  51 YGGTERVLWALYQGQTALGHQVRFLLKANANHAPYV-------------------QVFDESKPLHEQIDD-WADMVHFHFPYEG-------E--L 116
                     69***********************86666555555...................677777778888875.7899999998887.......2..7 PP

  Glyco_transf_4  96 giplVltvHglye.......k 109
                     ++p+V+t H+  e       +
      EGE26249.1 117 HKPFVCTEHSNSEvekefpiN 137
                     899999999988766555550 PP

>> DDE_Tnp_IS66  Transposase IS66 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.1e-05     0.093     128     163 ..     287     324 ..     276     337 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.1e-05
  DDE_Tnp_IS66 128 lvsDgyagYnklae..eqvthalCwaHlrRkfvdaeea 163
                   l sD ya+ ++  +   q+++++C+ H++R+f  ++ +
    EGE26249.1 287 LLSDSYAVLSEALKdvAQFDRLACHEHAKRHFSHLSMS 324
                   789*****999655699***************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2667.97
//
Query:       EGE26250.1  [L=264]
Description: galactosyltransferase Lgt5 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0004   20.9   0.0    0.00091   19.8   0.0    1.6  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
     0.0082   15.6   0.0      0.015   14.7   0.0    1.4  1  Caps_synth      Capsular polysaccharide synthesis protein


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     1e-07   0.00091      55      88 ..      74     108 ..      51     116 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1e-07
  Gly_transf_sug  55 plfialsDllRlaiLyk.yGGiYlDtDvivlkslr 88 
                       ++  sD++R+ +L +   GiY+D Dv +lk+++
      EGE26250.1  74 GSYALFSDIFRYELLNQtNHGIYVDCDVYCLKPIT 108
                     456789*********86257*************92 PP

>> Caps_synth  Capsular polysaccharide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.7e-06     0.015     109     140 ..      75     107 ..      60     114 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-06
  Caps_synth 109 saahfSDllRleLLkk.yGGvWiDaTifltkkl 140
                 s+a fSD+ R eLL++ + G+ +D  +++ k++
  EGE26250.1  75 SYALFSDIFRYELLNQtNHGIYVDCDVYCLKPI 107
                 899***********85388**********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2180.18
//
Query:       EGE26251.1  [L=42]
Description: hypothetical protein EA1_05282 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 332.40
//
Query:       EGE26252.1  [L=621]
Description: lipid A export permease/ATP-binding protein MsbA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-39  135.5  15.9    3.8e-39  135.0  15.9    1.3  1  ABC_membrane  ABC transporter transmembrane region
    3.7e-31  108.5   0.0    7.8e-31  107.4   0.0    1.6  1  ABC_tran      ABC transporter
    2.8e-08   33.5   0.1    2.7e-07   30.3   0.1    1.9  1  SMC_N         RecF/RecN/SMC N terminal domain
     0.0075   16.0   0.0      0.013   15.2   0.0    1.3  1  AAA_15        AAA ATPase domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.031   14.0   0.0    1.6  1  DEAD          DEAD/DEAH box helicase
       0.02   14.6   0.2       0.31   10.7   0.2    2.3  1  AAA_30        AAA domain
      0.045   13.5   0.0       0.14   11.9   0.0    1.8  1  AAA_29        P-loop containing region of AAA domain
      0.045   13.6   0.0      0.091   12.7   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
      0.072   13.4   0.2       0.55   10.5   0.2    2.3  1  AAA_22        AAA domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0  15.9   1.9e-42   3.8e-39      37     273 ..      78     332 ..      18     333 .. 0.89

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 1.9e-42
                   H..................HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  37 t..................ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdgl 115
                                      +++ v+ l++++l+++++i+ +++ yl+ +++  ++ +lr+++f+k+l +p + ++++s+Ge+l  +   v++  +  
    EGE26252.1  78 LeklkyyvdsfqhaiwgtkHKIWVVPLFFMGLVIFRGICRFISAYLMAWVATTAIGHLRQDMFDKMLLLPSEQYQSMSSGEMLMNMVQMVENSINHA 174
                   05555555555555556588899999*********************************************************999999999999** PP

                   CHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHH CS
  ABC_membrane 116 geklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekalee 212
                   +  +++++++ l+++g+++v+fyl+w+l+l++++++p++  +s ++  +lk + ++ qk+++ +++v++E+ +g+r++k+fg+++   +kf++ ++ 
    EGE26252.1 175 SGVFIVLTRDTLIVIGLVCVLFYLNWQLALLIMVMFPILSGLSRYYRNRLKGVINNAQKSIGSLNTVINETHQGHRVIKLFGGQKHSANKFNQVNTL 271
                   ************************************************************************************************* PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 213 akkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                     + g+k   a+++ ++i++++g+++ a++++f+ +++++g  ++g++ +f++ ++++fg+
    EGE26252.1 272 IVRLGKKISQADAARSPISEVVGSTALAVVIFFALWQSQQGMTTIGEFMAFIVAMMQMFGP 332
                   ***********************************************************98 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.0   3.9e-34   7.8e-31       1     137 []     394     543 ..     394     543 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 3.9e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalskl 92 
                 l++ +l++++gek+a+vG++G+GK+t ++ll +  +p +Geilld+ +++e +l  lr++++ ++qe +lf+++ + en       + + e+ +al+  
  EGE26252.1 394 LDDFNLDIRPGEKIAFVGRSGSGKTTAINLLPRFINPVAGEILLDNINIQEVDLANLRSQFALVSQEIFLFDDT-LFENvrysrpaATEMEVMAALQAA 491
                 7899**********************************************************************.999999999986666666666666 PP

                 TTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +l+e         ++++++++s LSgGq+qrv++ara+lk++++lllDE+t+
  EGE26252.1 492 NLTElvhkhpkGIHQPIGTNGSLLSGGQRQRVSIARAILKDAPILLLDEATS 543
                 666655566666677888888*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   1.4e-10   2.7e-07     118     210 ..     479     584 ..     392     590 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.4e-10
                 E-HHHHHHHHHCTT-STT.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 xxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 118 vtkkevsellesagiske.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                 +t+ ev+  l+ a++++                  lLSgG+++ v++a        k ap+ llDe  +aLD++  + v + l++  +    i++++r 
  EGE26252.1 479 ATEMEVMAALQAANLTELvhkhpkgihqpigtngsLLSGGQRQRVSIAR----AILKDAPILLLDEATSALDNESERLVQQALERLMTGRTSIIVAHRL 573
                 334444444444444433777777777777777779******9988764....45799***************************************** PP

                 HHCCC-SCEEE CS
                 xxxxxxxxxxx RF
       SMC_N 200 emlekadklvg 210
                  ++e+ad+++ 
  EGE26252.1 574 STIEQADRIIV 584
                 *******9985 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.5e-06     0.013      12      68 ..     392     445 ..     392     507 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.5e-06
      AAA_15  12 Rslkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleif 68 
                 ++l+d+ +d+ +     ++G+ +sGK++++++l  F+n        +i +++ ++++ 
  EGE26252.1 392 KALDDFNLDIRPGeKIAFVGRSGSGKTTAINLLPRFINPV----AGEILLDNINIQEV 445
                 689999999999889**********************976....44444444444444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.6e-05     0.031      13     149 ..     403     560 ..     399     570 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
                 TTCEEEEEESTTSSHHHH......HHHHHHHHHHHS............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT..STSEEEEEETTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTla......flipvlqivyet............kgktgpkalivePtreLaeqtlnnlkkfkky..idlrvlliiggvaardql 91 
                  g+++   ++ GsGKT+a      f+ pv      +              + + +  +v+    L  +tl +  ++  +  ++++v++ ++  + ++ +
  EGE26252.1 403 PGEKIAFVGRSGSGKTTAinllprFINPVAG----EilldniniqevdLANLRSQFALVSQEIFLFDDTLFENVRYSRPaaTEMEVMAALQAANLTELV 497
                 6788889999********6555555555553....1334468888776455557888888888999888755555555424668888888988888888 PP

                 HHHHTTCSEEEEEHHHHHHHHHCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  92 skldngvdivvgtpgrlddllstgkln.....lsqvrflVlDEadrlldqgfsdfinrilnql 149
                  k  +g++  +gt g l++  ++++++     l++  +l lDEa   ld++ ++ +++ l++l
  EGE26252.1 498 HKHPKGIHQPIGTNGSLLSGGQRQRVSiaraiLKDAPILLLDEATSALDNESERLVQQALERL 560
                 888899*************8877776667888**********************999999998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00016      0.31      23     114 ..     409     558 ..     402     569 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
      AAA_30  23 ltGpAGtGKttalkalreaweaa.g....................................grviglAptgkaAkvLaeelgieastiakllkrlk... 81 
                  +G+ G+GKtta++ l + ++   g                                    +    +  +  aA +++  + ++a+++ +l++++    
  EGE26252.1 409 FVGRSGSGKTTAINLLPRFINPVaGeilldniniqevdlanlrsqfalvsqeiflfddtlfE---NVRYSRPAATEMEVMAALQAANLTELVHKHPkgi 504
                 689*************8888877568999999986666666666666666666666652222...3334455555566666789999999999999999 PP

      AAA_30  82 .....................grarlepgtllivDEagmvdtkqlaallkaaek 114
                                      +ra l+++ +l+ DEa  +  ++ ++l+++a +
  EGE26252.1 505 hqpigtngsllsggqrqrvsiARAILKDAPILLLDEATSALDNESERLVQQALE 558
                 999999999999999999998777788889999999999999999999988865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     7e-05      0.14      15      39 ..     397     421 ..     389     424 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7e-05
      AAA_29  15 htieidlkgatlltGpsGsGKSTll 39 
                   ++i++ + + ++G+sGsGK+T +
  EGE26252.1 397 FNLDIRPGEKIAFVGRSGSGKTTAI 421
                 56788888899************77 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.6e-05     0.091      80     119 ..     384     424 ..     357     446 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.6e-05
                  EE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  80 llvsaktkegleelkellkd.ktsvlvGqSGvGKStLinal 119
                  +   ++t+++l++ +  ++  + +++vG SG GK+t in l
   EGE26252.1 384 VQYGNETTKALDDFNLDIRPgEKIAFVGRSGSGKTTAINLL 424
                  455567778888888888887999***************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00028      0.55       8     104 ..     407     546 ..     402     582 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00028
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelka................................... 70 
                 ++ +G sG+GKTt ++ l +  + +a      +  + +v+l+++ s+  l ++    +++ l +                                   
  EGE26252.1 407 IAFVGRSGSGKTTAINLLPRFINPVAGEILlDNINIQEVDLANLRSQFALVSQEIFLFDDTLFEnvrysrpaatemevmaalqaanltelvhkhpkgih 505
                 6789*************9999876655555533333366666665555554444444444444444444444444444444444444444444444555 PP

      AAA_22  71 .erlsseellealeqalrarav.....ielliiDEaqh.lr 104
                  + +++  ll+  +++  + a+      ++l++DEa   l+
  EGE26252.1 506 qPIGTNGSLLSGGQRQRVSIARailkdAPILLLDEATSaLD 546
                 53334444444433333333334455556666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 4567.49
//
Query:       EGE26253.1  [L=32]
Description: hypothetical protein EA1_05292 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      116  (0.00646996); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 267.35
//
Query:       EGE26254.1  [L=68]
Description: cold-shock DNA-binding protein family [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-29   99.3   2.4    8.4e-29   99.2   2.4    1.0  1  CSD       'Cold-shock' DNA-binding domain
     0.0071   16.0   1.0       0.01   15.5   0.4    1.5  2  OB_RNB    Ribonuclease B OB domain
  ------ inclusion threshold ------
       0.11   12.4   0.1       0.18   11.8   0.1    1.4  1  CusF_Ec   Copper binding periplasmic protein CusF


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   2.4   1.4e-32   8.4e-29       2      65 ..       5      67 ..       4      68 .] 0.98

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 1.4e-32
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                +G+Vkwfn++kgfGFI+re g+ dvFvH+ aiqg+g+rsL+egq+VeF v+ g+kg +A++Vtk
  EGE26254.1  5 QGVVKWFNDAKGFGFIQRETGE-DVFVHFRAIQGEGYRSLKEGQAVEFVVTTGDKGLQAEEVTK 67
                8*******************99.***************************************98 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   1.7e-06      0.01       7      29 ..      14      35 ..      11      38 .. 0.88
   2 ?   -2.2   0.0      0.58   3.4e+03      41      47 ..      52      58 ..      41      65 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-06
                SSS-EEEEECT.TEEEEE-HHHH CS
      OB_RNB  7 kkGFGFlipdegkeDifippeqm 29
                +kGFGF++ ++ +eD+f++ + +
  EGE26254.1 14 AKGFGFIQRET-GEDVFVHFRAI 35
                79********8.******97765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.58
                EEEESSS CS
      OB_RNB 41 ritkgdr 47
                 +t+gd+
  EGE26254.1 52 VVTTGDK 58
                3444444 PP

>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.9e-05      0.18      35      66 ..      35      65 ..      29      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.9e-05
                -TTSEESS-STT-EEEEEEEEETTCEEEEEEE CS
     CusF_Ec 35 adpallaglkaGdkVrFefekrdggeyvitki 66
                 + +  ++lk+G++V+F ++  d+g ++ +++
  EGE26254.1 35 IQGEGYRSLKEGQAVEFVVTTGDKG-LQAEEV 65
                55566789**************999.776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 513.67
//
Query:       EGE26255.1  [L=153]
Description: 3-dehydroquinate dehydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-58  194.6   0.0    5.8e-58  194.5   0.0    1.0  1  DHquinase_II  Dehydroquinase class II


Domain annotation for each model (and alignments):
>> DHquinase_II  Dehydroquinase class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.5   0.0   3.3e-62   5.8e-58       1     137 [.       8     148 ..       8     149 .. 0.96

  Alignments for each domain:
  == domain 1  score: 194.5 bits;  conditional E-value: 3.3e-62
                   .EEEEE-TTGGGTTTSTCCCC-SS-HHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHHCTT....T.TEEEEE-GGGGGT-HHHHHHHHTSSS- CS
  DHquinase_II   1 kilvlnGpNlnllgkrepeiygsetledieeelkekaeelgvelevfqsnhEgelidriqeake....kvdgiviNpgaythtSvalrdalaaveip 93 
                   k+ ++nGpNl+llg repeiygs tl+di+++l+++a ++g+el ++qsnhEg+++d i e+       vdg++iNpgaythtSva+rdal+a++ p
    EGE26255.1   8 KVALINGPNLHLLGIREPEIYGSVTLTDITNRLTSQAISHGIELIAYQSNHEGAIVDFIGECGLlssdPVDGVIINPGAYTHTSVAIRDALSAMDKP 104
                   689*********************************************************96545555889************************** PP

                   EEEEESS-GGGS-GGGG--SSGGGSSEEEESSTTHHHHHHHHHH CS
  DHquinase_II  94 vvEvhlsnvhaReefrhksvlsdvakgviaGlglegYelaleal 137
                   ++Evhlsn+h+Re+fr++s+lsd+a+gvi+Glg  gY++a++++
    EGE26255.1 105 FIEVHLSNIHSREPFRSHSYLSDKAVGVICGLGDMGYTMAMDWF 148
                   *****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1202.98
//
Query:       EGE26256.1  [L=377]
Description: PP-loop family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-13   49.5   0.0    6.4e-13   48.9   0.0    1.2  1  ATP_bind_3  PP-loop family
  ------ inclusion threshold ------
      0.054   13.8   0.0        5.9    7.3   0.0    2.6  2  ECSIT_C     C-terminal domain of the ECSIT protein


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   7.1e-17   6.4e-13       2     161 ..      83     246 ..      82     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 7.1e-17
                 EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--H......HHCTTSTCCCHHHHHHHHHHHHCHHC CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkelckklnikleiekvdv......akkkgknleeaARelRYevlkealkk 94 
                 v+v +SgG DS +Ll +l  lk+   i++ ++ v+   ++     +e++ ++ ++ +i+++i + d+         +gk+   a  +lR   l   +k+
  EGE26256.1  83 VMVCISGGKDSFTLLDILLFLKRIAPIHFEVVAVNLDQKQPG-FPEEVLPRYLSEQGIPYYILEKDTysivksVVPEGKTYCSACSRLRRGSLYGFAKQ 180
                 6899******************************99887665.5667899999999********999888876556688888899999*********** PP

                 CT.CEEE---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEE..TTCCEE-CCCT--HHHHHHHHHHTT- CS
  ATP_bind_3  95 egievlllAhhadDqaEtfllrlargsglaglagikeasei..asirlvRPlLkvskeeleeylkekki 161
                  g++ ++l+hh+dD + tf+l+l+ g +l    +++++     ++  l+RPl  v  +++ +y++ kk 
  EGE26256.1 181 IGATKVALGHHRDDILATFFLNLFHGGSL---KAMPPKLLSddKQNILIRPLAYVAEKDIIRYANYKKF 246
                 *************************8775...7777765442266889***************998875 PP

>> ECSIT_C  C-terminal domain of the ECSIT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00065       5.9      71     121 ..      59     109 ..      35     118 .. 0.79
   2 ?    3.7   0.0    0.0081        73      17      42 ..     124     149 ..     114     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00065
     ECSIT_C  71 kereekkkelvvkksvheqedGtvlAmcatgtsskdsllsWirlLqktnpi 121
                 ++++ +k+ +  +++   +edG v+ +c+ g ++  +ll+ + +L++  pi
  EGE26256.1  59 LQKKLRKEVSWAIRDFKMIEDGDVVMVCISGGKDSFTLLDILLFLKRIAPI 109
                 333444444478899999*********************999999987665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0081
     ECSIT_C  17 vfveGpfkvwLrdkcvkYfvLradpk 42 
                  f e   + +L ++ + Y++L+ d+ 
  EGE26256.1 124 GFPEEVLPRYLSEQGIPYYILEKDTY 149
                 555666677*************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2681.67
//
Query:       EGE26257.1  [L=935]
Description: 23S rRNA m(2)G2445 methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-29  101.4   0.0    1.1e-28  100.3   0.0    1.6  1  UPF0020          Putative RNA methylase family UPF0020
    6.9e-23   81.2   0.2    1.2e-22   80.4   0.2    1.3  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
    3.3e-08   33.4   0.0    0.00022   20.9   0.0    4.2  4  Cons_hypoth95    Conserved hypothetical protein 95
    9.2e-06   25.8   0.0    2.3e-05   24.5   0.0    1.7  1  THUMP            THUMP domain
      0.004   17.8   0.1       0.29   11.9   0.0    3.4  3  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   3.1e-32   1.1e-28       1     158 [.     225     414 ..     225     430 .. 0.84

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 3.1e-32
                 -SSS-SS---SS-HHHHHHHHHHTT--TT..S-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.......................HHHHHHHHHH CS
     UPF0020   1 RgyRefngpapLketLAaalvrlagwkpg..epllDPmCGsGtilIEaallganiapgllrefvle.......................lkaeaeeear 74 
                 RgyR++n  apLke+LAaal++ +gw++g  + ++DPmCGsGt+  Ea l+ a+ + gl +    +                        +a + + ++
  EGE26257.1 225 RGYRVANTAAPLKENLAAALLYECGWHQGihDAIIDPMCGSGTFITEALLMRADYPVGLEKAADEFgfycwqhhddklwdemvsdatqrFHACLSHLQN 323
                 9**************************986689***********************998877666678*********9999887755443334444444 PP

                 HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.......STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT CS
     UPF0020  75 aelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.......lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrg 158
                 + l +++ D d+ vvq++ +N+ +ag++ + +++++  ++L          + +  +i+tnpPYGerlg++  ++ LY+ ++  ++  +r+
  EGE26257.1 324 NPLTVIACDADAYVVQACHKNLIAAGLSPILDQVTLAQRALYrlpkllsTLTCSKPLIITNPPYGERLGDTDFIKPLYHGLGLHIAAAMRS 414
                 6677**********************987766666666655444487655556899***********************999888888877 PP

>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.2   3.4e-26   1.2e-22      81     233 ..     593     755 ..     543     768 .. 0.84

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 3.4e-26
  Methyltrans_SAM  81 eldespvvvesglkyqldigrnqnfglfldmrlgrdwvqenakdknvlnlfaytcgfsvaaiaggaskvvnvdmargslnkgrdnhrlng.... 170
                      +  + +vv e g  + +++    ++glf+d r+ r  + + ++ k+vlnlf+ytc  sv a   ga+ v  vd++   l+ g++n  lng    
       EGE26257.1 593 KRRKMWVVRELGAYFYVNFTDYLDTGLFIDHRHMRAKIGNASRAKRVLNLFSYTCTASVHAALAGAKSVTSVDLSANYLDWGKQNFALNGlvld 686
                      45678********************************************************99**************************93333 PP

  Methyltrans_SAM 171 ...hdlrrvsflgydifkswgkikksgpydlviidppsfq.....kgsfaltkdykkilrrlpellvegge 233
                          d ++ +f+ +d+f  w k  ++ +y+++ idpp+f      kg+f + +d+  ++ r  + l+  g 
       EGE26257.1 687 afyDDGEKYQFIAHDVFE-WIKH-HTEQYEVIFIDPPTFSnskkfKGTFDVQRDHVALINRAMNRLTADGV 755
                      3322446889*******6.8884.578************65555589*******99999998888877765 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.028        99      40      73 ..     254     286 ..     236     315 .. 0.83
   2 ?    3.8   0.0     0.011        40      67     127 ..     328     391 ..     324     405 .. 0.84
   3 !   20.9   0.0   6.1e-08   0.00022      38     133 ..     632     733 ..     626     755 .. 0.80
   4 ?   -1.4   0.0      0.45   1.6e+03     103     142 ..     882     921 ..     864     934 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.028
                    HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES- CS
  Cons_hypoth95  40 iegarvLDlfaGsGalglEAlSRgakkavlvekd 73 
                    i++a ++D  +GsG+   EAl   a+  v +ek 
     EGE26257.1 254 IHDA-IIDPMCGSGTFITEALLMRADYPVGLEKA 286
                    5555.9**************98777777766665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.011
                    EEEEES-HHHHHHHHHHHCCCT--T..TTEEEEES-HHHHCTS--S.S-EEEEEEE--SSSTTC CS
  Cons_hypoth95  67 avlvekdkeavkilkenleelklee..etaelkedaleallklakk.keefdivflDPPyakel 127
                    +++ + d+ +v+++++nl + +l+    + +l + al +l+kl ++ + +  ++  +PPy + l
     EGE26257.1 328 VIACDADAYVVQACHKNLIAAGLSPilDQVTLAQRALYRLPKLLSTlTCSKPLIITNPPYGERL 391
                    78899*****************99888889999999999999876623455799******9875 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 6.1e-08
                    CCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--T........TTEEEEES-HHHHCTS--SS-EEEEEEE--S.SS CS
  Cons_hypoth95  38 aeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelklee........etaelkedaleallklakkkeefdivflDPP.ya 124
                    ++ + +rvL+lf+ +++ ++ A+  gak+++ v+ +++ +   k+n +  +l          + + + +d +e ++++   +e+++++f+DPP + 
     EGE26257.1 632 NASRAKRVLNLFSYTCTASVHAALAGAKSVTSVDLSANYLDWGKQNFALNGLVLdafyddgeKYQFIAHDVFEWIKHH---TEQYEVIFIDPPtFS 724
                    5567899***************************************99988876778888856666666666666555...6789********555 PP

                    TTCH.HHHH CS
  Cons_hypoth95 125 kellieevl 133
                    +++ ++ ++
     EGE26257.1 725 NSKKFKGTF 733
                    555555555 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.45
                    HHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHHHTT-E CS
  Cons_hypoth95 103 allklakkkeefdivflDPPyakellieevlelleekkll 142
                    + ++++ +++++  v+++P  a+e+l ++++++l+e +l 
     EGE26257.1 882 NHSEHTPNQPNIKRVYVNPKSADENLAKRLTDKLAEANLQ 921
                    33445567789999*****999999999999999987664 PP

>> THUMP  THUMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   6.4e-09   2.3e-05      26     143 ..      75     216 ..      71     217 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 6.4e-09
                 EECTEEEEEETHHHHHHHHHTSTTECEEEEE...................EEEEESSHHHHHHHHHHHHHHHHHHCT-EEEEEEEESSSTS....SSHH CS
       THUMP  26 velkgekpeedeellkealekargiqrvipv...................cevceadledileaakeivkkkfeeeketFaVrvkrrgkhf....efts 101
                 ++ +++ +++d ++ + ++ ++r+++rv+ +                   +   e+  e ++ +a+ i++ ++++ + +Fa+r    +k++    +f  
  EGE26257.1  75 LRAGRVAVIVDLAKFYHICLYSRVASRVLLPlgeyhfkqklsqattnqpvEVLDEDVPEALYQFASRIDWINLFGLEHRFAIRLST-DKRLsvnqQFAT 172
                 677888999999999999999999999999999999999999999777755555555678****************99*****976.44455788**** PP

                 HHHHHHHHHHHHCCTT..-EE-SSS-SEEEEEEEETTEEEEEEE CS
       THUMP 102 reinrevGkaivektg..lkVdlenPdivvrveiikdkayisid 143
                  +i++++++ +++++g  + Vd ++Pd+ +++    + a+i++d
  EGE26257.1 173 LRIKDAIADTFNRAFGarPDVDAKQPDFQIFATANHKFAEIFLD 216
                 *****************************999888888888776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.5   1.3e+04       1      14 [.     258     271 ..     258     278 .. 0.76
   2 ?    1.7   0.0      0.12   4.3e+02      18      59 ..     324     368 ..     312     376 .. 0.76
   3 !   11.9   0.0   8.1e-05      0.29      13      69 ..     651     717 ..     639     747 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.5
                      EEEET-TTSHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltla 14 
                      ++d  cG+G+++ +
       EGE26257.1 258 IIDPMCGSGTFITE 271
                      67889****98765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.12
                      TSTSSEEEEEESSHHHHHHHHHHHHHTTT.....TEEEEESBCCGBS CS
  Methyltransf_25  18 rlgkakvtgvDiseemleaareraeeegl.....nvefvqgdaedlp 59 
                      +    +v+++D ++  ++a+++++ ++gl     +v++ q  + +lp
       EGE26257.1 324 N--PLTVIACDADAYVVQACHKNLIAAGLspildQVTLAQRALYRLP 368
                      3..589*****************999887666666666666665555 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 8.1e-05
                      HHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..........TEEEEESBCCG.BSSSTTTEEEEE CS
  Methyltransf_25  13 lalakrlgkakvtgvDiseemleaareraeeegl..........nvefvqgdaed.lpfedgsfDlvv 69 
                       ++a + g+++vt vD+s+++l+  +++++ +gl          + +f+ +d+ + ++ + +++ +++
       EGE26257.1 651 VHAALA-GAKSVTSVDLSANYLDWGKQNFALNGLvldafyddgeKYQFIAHDVFEwIKHHTEQYEVIF 717
                      333333.689*******************999995555555555555666665332445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 6219.72
//
Query:       EGE26258.1  [L=383]
Description: mechanosensitive ion channel family protein MscS [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-46  157.5   5.7    3.1e-46  157.5   5.7    1.9  2  MS_channel  Mechanosensitive ion channel
  ------ inclusion threshold ------
          2    7.2   7.4      0.086   11.7   1.6    1.6  2  YIEGIA      YIEGIA protein


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.17   1.5e+03       4      29 ..      89     114 ..      86     124 .. 0.80
   2 !  157.5   5.7   3.4e-50   3.1e-46       2     205 ..     155     354 ..     154     355 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHTTT--SCCHHH CS
  MS_channel   4 lkiliivvgilivlsllgvnvsalla 29 
                 l++l +++ +l+v+s++g+  ++++a
  EGE26258.1  89 LRYLWFMTSLLAVMSQIGITDKTVTA 114
                 789999999999***99998666555 PP

  == domain 2  score: 157.5 bits;  conditional E-value: 3.4e-50
                 .HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHH CS
  MS_channel   2 kilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnss 100
                 ++l+++i+++++ +v+  +g+++ +++a+lG++gla+g a++++++n++aG+++l+e++f++GD++++g+ eG+V++i+lr+t+i ++d+ i++iPns+
  EGE26258.1 155 NLLLVMILALAFATVMAKFGFDIFSIVAGLGIAGLAVGWASQSTLANFIAGVVILVEQSFQVGDWIRLGEKEGRVVKISLRATQILDRDNIIIIIPNST 253
                 7899*********************************************************************************************** PP

                 HHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHH CS
  MS_channel 101 lvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkil 199
                 +++s+++Nl+  ++  r++v+  + +++d   +  +++++++ l++++ vlk +++l+ + e+g s++ + vr++v + +++++  +++ in++ik++l
  EGE26258.1 254 VASSEVVNLTS-KKMIRFDVKTRIGLHAD---ITAARSVIMKTLQKDEVVLKHPAPLATVSEIGESGIYLIVRFWVAPLSVARIPIIKENINEKIKRAL 348
                 ***********.*****************...******************************************************************* PP

                 HHHT-- CS
  MS_channel 200 eeegie 205
                 +e gie
  EGE26258.1 349 DESGIE 354
                 *****8 PP

>> YIEGIA  YIEGIA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.4      0.63   5.6e+03     109     130 ..      91     114 ..      90     139 .. 0.55
   2 ?   11.7   1.6   9.6e-06     0.086     111     246 ..     159     296 ..     154     304 .. 0.61

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 0.63
      YIEGIA 109 Ylalltalvtslav......ilisilvg 130
                 Yl  +t+l++++        +    +++
  EGE26258.1  91 YLWFMTSLLAVMSQigitdkT----VTA 114
                 777788887776664433221....222 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 9.6e-06
      YIEGIA 111 alltalvtslav.....ilisilvgiivglilllilkklmkgksigdiaevkeaklsfk.gseLkvd..divimniGlkesrekilkeglgviikPkde 201
                 +++ al+ ++++      ++si++g+ ++ +++  +++ +  + i  ++ + e+  sf+ g  + ++  +  +++i l+++  +il++   +ii+P+++
  EGE26258.1 159 VMILALAFATVMakfgfDIFSIVAGLGIAGLAVGWASQSTLANFIAGVVILVEQ--SFQvGDWIRLGekEGRVVKISLRAT--QILDRDNIIIIIPNST 253
                 566665555555334433444555544444444444444444455544444444..4444444444400445777776655..466666668999**** PP

      YIEGIA 202 naratlanlGqRqailhdvatalGvkkdvdepeltplarrdldtg 246
                  a++ + nl  ++ i +dv t++G++ d+     + +    l+++
  EGE26258.1 254 VASSEVVNLTSKKMIRFDVKTRIGLHADITAARSVIMK--TLQKD 296
                 ***************************88766555444..34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2760.97
//
Query:       EGE26259.1  [L=798]
Description: phosphoenolpyruvate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-118  395.3   0.1   3.4e-118  394.7   0.1    1.2  1  PPDK_N           Pyruvate phosphate dikinase, PEP/pyruvate bi
    1.1e-62  211.9   0.0    1.8e-62  211.1   0.0    1.3  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
    2.5e-24   84.8   0.9    6.4e-24   83.5   0.9    1.8  1  PEP-utilizers    PEP-utilising enzyme, mobile domain


Domain annotation for each model (and alignments):
>> PPDK_N  Pyruvate phosphate dikinase, PEP/pyruvate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.7   0.1  5.7e-122  3.4e-118       2     321 ..      19     346 ..      18     351 .. 0.95

  Alignments for each domain:
  == domain 1  score: 394.7 bits;  conditional E-value: 5.7e-122
      PPDK_N   2 elvGGKganLael...lneagipvPpgfaitadafrefleengleekideelkeldvddvdelrkaskeirelilsaelPeeleeaikeayeelgkkfg 97 
                 ++vGGK+a+L+e+   l  +g++vP+gfa+tadaf++fl+e+gl +ki+ elk ldvddvd l++ +++ir++i+++elP++le++i+ a++el+k  g
  EGE26259.1  19 DIVGGKNASLGEMishLGGLGVNVPNGFATTADAFNRFLNETGLLDKINTELKGLDVDDVDLLTQIGAKIRSWIIEQELPKDLENEIRTAFAELSK--G 115
                 68***********54444455*************************************************************************98..5 PP

      PPDK_N  98 deelpvaVRSSataEDlpkasfaGqqdtyLnvggeeevleaikavfaSlfnerAilYrkekgldheevalavvvqkmvnsdlgasGVafsldpetGfkd 196
                 ++   vaVRSSataEDlp+asfaGqq+t+Ln++g ++vl aik+vfaSl+n+rAi+Yr +kg++h  val++++q+mv+s++g sGV+f+ld+e+Gf++
  EGE26259.1 116 ED-IAVAVRSSATAEDLPDASFAGQQETFLNIRGIDNVLIAIKEVFASLYNDRAIAYRVHKGFEHAGVALSAGIQRMVRSETGTSGVMFTLDTESGFNE 213
                 54.99********************************************************************************************** PP

      PPDK_N 197 evlinasyGlGeaVVaGrvtpdefvvekstrk.....ilekkigekeikivydekeeg...tkevevpeeereklaLsdeeveeLaeiakkiekhygtp 287
                 +v+i+asyGlGe VV+G+v+pdef+++k   +     ++++++g+k++k++y +++++   tk v+v+++er+++aLs+ee+++La+ a  iekhyg+p
  EGE26259.1 214 VVFITASYGLGEMVVQGAVNPDEFYLSKVLLEqnrpaVIRRNLGSKQKKMIYGDEGSTtksTKIVDVDKAERHQFALSSEELTRLAKQAMIIEKHYGCP 312
                 ***************************9988889999***************99887767788999********************************* PP

      PPDK_N 288 mdiEfaideeegklyllQaRpetrtsekkekkaa 321
                 mdiE+a+d+++g+++++QaRpet++s++ +++++
  EGE26259.1 313 MDIEWAKDGDSGEIFIVQARPETVKSRQDKNHME 346
                 **************************98887754 PP

>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.1   0.0     3e-66   1.8e-62      14     285 ..     477     782 ..     468     790 .. 0.90

  Alignments for each domain:
  == domain 1  score: 211.1 bits;  conditional E-value: 3e-66
                      HCCCXBCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTS.CC.HHHHHH.............................HHHHHHHHHHHTT CS
  PEP-utilizers_C  14 tkdgkkikvlaNidtpedaekalengaeGiGLlRtEflfmar.ee.lpteee.............................qaeaykkvleamn 76 
                      t +  ++k+++N+++p+ a   ++ + +G+GL R Ef+++ +    ++++ +                             + e + +++ a+ 
       EGE26259.1 477 TMPELAFKIMMNVGNPDRAFGFAQIPNQGVGLARLEFIINRMiGVhPKALLNldtlpqetvqavqermagynspvefyinkLIEGISTLAVAFR 570
                      5566789********************************9985332455555899*************************************** PP

                      TSEEEEEXXXSSCCGGSGGC...HHHH.XSXGGGSSXTHHHHCCS..HHHHHHHHHHHHHHCCCC...EEEEEESSXXSHHHHHHHHHHHHHHH CS
  PEP-utilizers_C  77 grpvvvRtlDiggdkelpel...keepeevNPmlGfRgirlglse..pelfetqlrAllrasaag...kleimlPmvasveeleeakkiieevk 162
                      ++pv+vR+ D+++++  + +    +ep+e+NPmlGfRg ++++s   ++ fe + rAl+ ++  +   +++im+P+v+++ e ++  +++e+  
       EGE26259.1 571 DKPVIVRMSDFKSNEYANLIggkLYEPSEENPMLGFRGASRYVSDnfRDCFELECRALKYVRDDMgltNVKIMIPFVRTTGEAKQVIELLEKN- 663
                      **************654443334699***************9998899**************944455**************99999999887. PP

                      HHHHHCTCTXXTTXEEEEEEXSHHHHHTHHHHCTTSSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEEESC CS
  PEP-utilizers_C 163 eelekegvkkkkkvkvGiMiEvpsaalladklakevdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgiCGe 256
                        l++     ++++++ +M E p  a+lad+++k+ d+fSiG+NDLtQ+tl++dRd+  v++l+d+ +pav+++++  i+a++++g+ vgiCG+
       EGE26259.1 664 -GLKRG----DNELEIIMMCELPTNAVLADEFLKYFDGFSIGSNDLTQLTLGLDRDSGIVSHLFDERDPAVKKMLSLAIDACNKAGKYVGICGQ 752
                      .44444....889********************************************************************************* PP

                      CCCSCC.CHHHHHHCTXSEEEEXGGGHHHH CS
  PEP-utilizers_C 257 lagdps.avellvglGldelSmsaasvpaa 285
                       ++d    + +l++ G+d++S++++sv+ +
       EGE26259.1 753 GPSDHAdLAYWLMEQGIDSVSLNPDSVLDT 782
                      ***86516789***************9865 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.9   1.1e-27   6.4e-24       2      73 .]     385     456 ..     384     456 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 1.1e-27
                    --S-EEEEES---HHHHTTS-GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEETTTT CS
  PEP-utilizers   2 leegvILvaeetspsdiagldkaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDgstG 73 
                    +++g++Lv ++t+p++ + +++a++i+t+rGG+t+HaAi+Arelg+Pa+vg g+at++l++g ++tv +++G
     EGE26259.1 385 VQDGDVLVSDMTDPDWEPVMKRASAIITNRGGRTCHAAIIARELGVPAIVGSGNATEVLVDGHEVTVSCAEG 456
                    789******************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5567.67
//
Query:       EGE26260.1  [L=288]
Description: hypothetical protein EA1_05327 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-73  245.9   0.1    6.4e-73  245.7   0.1    1.0  1  Kinase-PPPase  Kinase/pyrophosphorylase


Domain annotation for each model (and alignments):
>> Kinase-PPPase  Kinase/pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.7   0.1   3.5e-77   6.4e-73       2     255 .]      21     277 ..      20     277 .. 0.95

  Alignments for each domain:
  == domain 1  score: 245.7 bits;  conditional E-value: 3.5e-77
  Kinase-PPPase   2 fvvSdstGetaeavaraalaqFeevevelevlpfvkteekleevleeakeee......aivvyTlvdeelrealeeaaeekgveavdllgplleal 91 
                    f++Sd+t++tae++++++l+qF++ve++++v+p+v+t   ++e++++++++       ++v+ T+v++++re++ +aa++   + +d+ + l++++
     EGE26260.1  21 FFISDGTAITAETLGKSLLSQFSDVEFDIQVIPYVDTPLLAREAVQRINNAYqssnlrPLVFDTIVSDDIREII-NAADA---HNLDIYEGLINRI 112
                    89**********************************************5543479999****************.66666...899********** PP

  Kinase-PPPase  92 eeelgvkpkeepgllhkl..dedYfkrieAieFalkhDDGkkprklkeADivLvGvSRtsKTPlSlyLaq.kglkvaNvPLvpe....lelpkelf 180
                    ++e+++kp++++g+ h+   ++dY +ri+A++Fal++DDG+++++++ ADi+L+G+SR++KTP+SlyLa  +g+++aN+PL++e     +lp+ l 
     EGE26260.1 113 ATEINHKPNPHTGMAHSRvdSDDYKARIDAVHFALDNDDGARTNHYDGADIILIGLSRSGKTPTSLYLALqYGIRAANYPLTEEdldtSQLPRVL- 207
                    **************88777899***********************************************99************9899899**999. PP

  Kinase-PPPase 181 evdkkkvfgLtidperLveiRkeRlkslglksesYadlerveeeleeaeklfrklgipvidvtnksiEetAaeil 255
                    + +++k+fgLtid+erLv+iR+eR +     s +Ya+l++++ee +++++++++++ip ++v++ s+Ee+A++il
     EGE26260.1 208 KPYHHKLFGLTIDTERLVRIRQERKA----GS-RYASLAQCQEEQRAIQAIYSHQKIPSLNVSEMSVEEIATRIL 277
                    *************************9....66.9***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2075.38
//
Query:       EGE26261.1  [L=522]
Description: soluble pyridine nucleotide transhydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-60  203.7   0.0    4.5e-60  203.4   0.0    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.1e-29  102.8   1.4    1.3e-29  102.7   0.2    1.7  1  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    1.9e-20   73.2   0.2    2.5e-15   56.8   0.0    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    4.2e-09   36.5   0.8    1.9e-08   34.4   0.1    2.3  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    4.6e-09   36.0   0.1    0.00065   19.0   0.0    2.3  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    8.5e-09   34.6   2.0    1.2e-05   24.2   0.7    2.6  2  HI0933_like     HI0933-like protein
    1.3e-07   31.5   0.8    0.00031   20.4   0.0    2.8  3  DAO             FAD dependent oxidoreductase
      2e-07   30.4   0.7    3.3e-05   23.2   1.2    2.8  3  GIDA            Glucose inhibited division protein A
    2.1e-07   30.7   0.0      3e-07   30.2   0.0    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
      3e-07   29.9   2.2    4.2e-06   26.1   1.7    2.5  2  FAD_binding_2   FAD binding domain
    5.4e-06   26.4   0.2       0.15   11.9   0.0    2.3  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
    7.1e-06   25.5   0.0      0.063   12.6   0.0    2.3  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    1.7e-05   24.2   0.4    8.7e-05   21.9   0.0    2.0  2  Thi4            Thi4 family
    7.3e-05   22.8   0.0       0.17   11.9   0.0    2.6  2  NAD_binding_9   FAD-NAD(P)-binding
    0.00012   21.4   0.1    0.00094   18.5   0.1    2.0  2  FAD_binding_3   FAD binding domain
    0.00014   21.3   1.1      0.059   12.7   0.1    2.9  3  Amino_oxidase   Flavin containing amine oxidoreductase
    0.00071   20.1   0.0       0.18   12.3   0.0    2.8  2  XdhC_C          XdhC Rossmann domain
     0.0008   18.8   0.3        1.1    8.5   0.0    2.8  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
     0.0017   18.0   0.4        2.1    8.0   0.0    2.4  2  ApbA            Ketopantoate reductase PanE/ApbA
     0.0038   17.5   0.2       0.12   12.7   0.0    2.6  2  TrkA_N          TrkA-N domain
     0.0065   15.6   1.6      0.012   14.6   0.5    1.9  3  Lycopene_cycl   Lycopene cyclase protein
     0.0076   15.4   0.0       0.15   11.2   0.0    2.2  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
      0.029   13.7   0.0        6.5    6.0   0.0    2.3  2  ThiF            ThiF family
      0.085   12.5   0.0       0.16   11.6   0.0    1.4  1  ALC             Phage ALC protein
        0.1   13.1   0.0       0.58   10.6   0.0    2.1  2  NAD_binding_7   Putative NAD(P)-binding
       0.11   12.5   0.0        1.3    9.1   0.0    2.2  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
       0.12   12.0   0.4        2.7    7.5   0.1    2.3  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.4   0.0   6.7e-63   4.5e-60       1     294 []      66     386 ..      66     386 .. 0.95

  Alignments for each domain:
  == domain 1  score: 203.4 bits;  conditional E-value: 6.7e-63
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHHCCCC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias........................evvkklnqgiell 70 
                  +d +viG+GpAG aaa++la++g++v++++     +g+c ++g ++skal+++  +   ++                        ev++ + +  +l+
   EGE26261.1  66 YDAIVIGAGPAGEAAAMKLAKSGHRVAVIDprdqVGGNCAHVGTIPSKALRQSVFNIINFRrdplfkqnkdsyqvplskvlsrarEVIRHQVNTHKLF 163
                  5789*************************99999******************9999877779****************99999997777777778888 PP

                  HCCTCEEEEESCEEEEETEEEC......TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  71 lgeevvkidpgkkkvklekkke......gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaala 162
                  ++++ +++++g++ + + ++ e      + +++i++++ ++A Gs+p ++ i        ++ r +ds++ l+ +   ++i++ G+G+iG+E+A+ ++
   EGE26261.1 164 YERNQIQVIHGWGSFIDAHTLEvyindqEPTKTITFNQAIIAVGSRPYRPEILDF-----DHPRVFDSDKILQMDYIARKIIIYGAGVIGCEYASIFT 256
                  8899*************99999***9998899******************88877.....44599********************************* PP

                  HHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Pyr_redox_2 163 klgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle.eklglelderggiv 259
                   lg+ v l+   d+ll+ ldke+s+al + +++ Gv+++ ++++  ++ +++ + ++l++g++i+ad ++++ G++ +t+ l+ e++gl+ ++rg+++
   EGE26261.1 257 GLGYVVDLINNKDQLLSYLDKEISDALSHDFRQFGVRIRNHEEIDHLETHDDCVVLHLKSGKKIKADAILWCNGRSGNTDSLNlEAVGLTANSRGQLE 354
                  ************************************************99997779****************************************** PP

                  --TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 260 vdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  vd+++rt++p+iya+GDv+   g p la aA +qG
   EGE26261.1 355 VDKTYRTSIPHIYAVGDVI---GWPSLASAAYDQG 386
                  *******************...**********998 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.2     2e-32   1.3e-29       1     109 [.     405     513 ..     405     514 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 2e-32
                    BEEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSB CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladti 96 
                    +pt ++t pe++s+G+te+e++a++ +++vg++ fk+++r+++ +e++g++K++++++t ++lG+h+ G++a+e+i+  ++++k+g t e +++t 
     EGE26261.1 405 VPTGIYTIPEISSIGKTEAELTAEKTPYEVGQAFFKHLARSQIIGERSGVLKILFHRETLELLGIHCYGNHASEIIHIGQAVMKCGHTLEYFINTT 500
                    799********************************************************************************************* PP

                    SSSSSTGGGGHCH CS
  Pyr_redox_dim  97 hihPtlsealkea 109
                    + +Pt++ea++ a
     EGE26261.1 501 FNYPTMAEAYRVA 513
                    ********99866 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   7.9e-05     0.053       2      35 ..      68     101 ..      67     123 .. 0.91
   2 !   56.8   0.0   3.8e-18   2.5e-15       1      76 [.     238     310 ..     238     318 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.9e-05
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 ++v+G+G  g  +A  la+ g++V v++ +d++ 
  EGE26261.1  68 AIVIGAGPAGEAAAMKLAKSGHRVAVIDPRDQVG 101
                 58*****************************997 PP

  == domain 2  score: 56.8 bits;  conditional E-value: 3.8e-18
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesv 76 
                 k+++ G+G+ig+E+A++++ lg  V ++ ++d+ll++lD+e+s++l   +++ g++++ ++++  +e+++d    v
  EGE26261.1 238 KIIIYGAGVIGCEYASIFTGLGYVVDLINNKDQLLSYLDKEISDALSHDFRQFGVRIRNHEEIDHLETHDDC---V 310
                 699******************************************************************996...3 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   2.9e-11   1.9e-08       1      37 [.      70     106 ..      70     120 .. 0.94
   2 ?   -0.8   0.0       2.9   1.9e+03       3      29 ..     243     269 ..     241     271 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.9e-11
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-E CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraas 37 
                    ++GaG +G +aA  Lak g++v +++ rd++GG++a 
     EGE26261.1  70 VIGAGPAGEAAAMKLAKSGHRVAVIDPRDQVGGNCAH 106
                    8**********************************86 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.9
                    --SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   3 GaGlsGlvaAylLakagfdvlllekrd 29 
                    GaG+ G+ +A+  +  g+ v+l+ + d
     EGE26261.1 243 GAGVIGCEYASIFTGLGYVVDLINNKD 269
                    9******99999999999999987766 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   2.1e-05     0.014       1      30 [.      69      97 ..      55     117 .. 0.85
   2 !   19.0   0.0   9.9e-07   0.00065     122     305 .]     196     370 ..     179     370 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.1e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 i+iGaGPaG aaa++l k+g  ++ +++  
   EGE26261.1 69 IVIGAGPAGEAAAMKLAKSGH-RVAVIDPR 97
                 789999999999999999998.68888754 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 9.9e-07
  Pyr_redox_3 122 tyeAkkviiAtGefdkPnklnipGeeklvkhyskvk.efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrl 218
                  t++ ++ iiA G   +P++++i   + ++ ++  +k   ++y  +k+++ G++  ++++A  +   g  V ++ +++++ +        l   i + l
   EGE26261.1 196 TITFNQAIIAVGS--RPYRPEILDFD-HPRVFDSDKiLQMDYIARKIIIYGAGVIGCEYASIFTGLGYVVDLINNKDQLLSY-------LDKEISDAL 283
                  67778889****8..99999999888.5666555553445999********************************9865443.......555556666 PP

  Pyr_redox_3 219 eelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkk..slfeldedgrpvlteeteetnvpglflaG 305
                   +  ++  +++  ++e++ +++++  + ++ ++gkk+++ d ++ + G + +++ l+    +++ ++ g+ +++ +t  t +p ++ +G
   EGE26261.1 284 SHDFRQFGVRIRNHEEIDHLETHDDCVVLHLKSGKKIKA-DAILWCNGRSGNTDSLNLeaVGLTANSRGQLEVD-KTYRTSIPHIYAVG 370
                  66556634999999********************99876.777788*******998773355555555555554.688899*****998 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.7   1.9e-08   1.2e-05       2      36 ..      67     101 ..      66     109 .. 0.91
   2 !    9.0   0.0   0.00076       0.5     109     163 ..     277     330 ..     266     335 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.9e-08
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  d iviG+G+AG  aA+++ak g+rV++++  +++g
   EGE26261.1  67 DAIVIGAGPAGEAAAMKLAKSGHRVAVIDPRDQVG 101
                  89***************************999998 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00076
                  HHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 109 edivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  ++i dal +  ++ gv++r ++e+ ++e+++d  + +++ks+++++ad+++   G
   EGE26261.1 277 KEISDALSHDFRQFGVRIRNHEEIDHLETHDDC-VVLHLKSGKKIKADAILWCNG 330
                  6899***********************887777.999***********9987655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.7e-07   0.00031       1      36 [.      67     103 ..      67     217 .. 0.85
   2 ?   -1.1   0.5       1.6   1.1e+03       2      12 ..     239     249 ..     238     269 .. 0.86
   3 !    8.4   0.0    0.0021       1.4     150     201 ..     281     330 ..     276     364 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.7e-07
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36 
                 d ++iG+G +G ++A+ La+ g  V++++ +d++g g 
  EGE26261.1  67 DAIVIGAGPAGEAAAMKLAKSGhrVAVIDPRDQVG-GN 103
                 789******************99*********999.54 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
                 EEEECTSHHHH CS
         DAO   2 vviiGGGiiGl 12 
                 ++i G+G+iG+
  EGE26261.1 239 IIIYGAGVIGC 249
                 8999******9 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0021
                 HHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--G CS
         DAO 150 aalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaG 201
                  al +++++ Gv+i++++e+ +le +d+ v+     ++g + +ada+  ++G
  EGE26261.1 281 DALSHDFRQFGVRIRNHEEIDHLETHDDCVVLH--LKSGKKIKADAILWCNG 330
                 688999*****************9988664433..55577756799****99 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.2   4.9e-08   3.3e-05       1      44 [.      67     113 ..      67     209 .. 0.90
   2 ?    3.9   0.0     0.034        23       1      34 [.     238     270 ..     238     290 .. 0.87
   3 ?   -3.3   0.0       5.3   3.5e+03     348     375 ..     357     382 ..     352     393 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.9e-08
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE...ES-GGGTT--SSSSEE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsi 44 
                 d iViG+G AG +AA+++a++G++v+ i    +  +++a+++  ps 
  EGE26261.1  67 DAIVIGAGPAGEAAAMKLAKSGHRVAVIdprDQVGGNCAHVGTIPSK 113
                 579*************************8876777777777777775 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.034
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGG CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldt 34 
                 ++i+ G+G  Gce A     lG+ v Li  + d+
  EGE26261.1 238 KIIIYGAGVIGCEYASIFTGLGYVVDLIN-NKDQ 270
                 58999**********************94.4444 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.3
                 TTSBBSSSBTEEE-CGGGTB-SHHHHHH CS
        GIDA 348 ntLetkkvkgLflAGqinGteGYeEaaa 375
                 +t +t+ ++++++ G++ G    +++aa
  EGE26261.1 357 KTYRTS-IPHIYAVGDVIGWP-SLASAA 382
                 567776.99999999999975.344444 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   4.5e-10     3e-07       1      43 [.      67     109 ..      67     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 4.5e-10
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglv 43 
                   D +V+G+gpaG aAA+  a++G +v+++++r+ +GG+ +  + 
    EGE26261.1  67 DAIVIGAGPAGEAAAMKLAKSGHRVAVIDPRDQVGGNCAHVGT 109
                   679**********************************987664 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   1.7   6.2e-09   4.2e-06       1      38 [.      67     104 ..      67     108 .. 0.94
   2 ?    1.2   0.0      0.23   1.5e+02     376     404 ..     353     375 ..     340     394 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 6.2e-09
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38 
                    D+iViG+G AG aAA+++a+ G++vav++  +++gg+ 
     EGE26261.1  67 DAIVIGAGPAGEAAAMKLAKSGHRVAVIDPRDQVGGNC 104
                    89******************************999975 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.23
                    EEBETTSBESTTEEESSBTEEE-STCEES CS
  FAD_binding_2 376 vetdengrvldadgqpipGLYAaGevaag 404
                    +e+      ++   + ip  YA+G v+++
     EGE26261.1 353 LEV------DKTYRTSIPHIYAVGDVIGW 375
                    334......555666***********966 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.5   0.00023      0.15       4      33 ..      70      99 ..      67     110 .. 0.91
   2 !   11.9   0.0   0.00022      0.15       2      50 ..     239     287 ..     238     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
                EE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N  4 viGaGtmGagiaavfasagleVvlvdisee 33
                viGaG  G+  a+ +a++g++V ++d +++
  EGE26261.1 70 VIGAGPAGEAAAMKLAKSGHRVAVIDPRDQ 99
                9*************************9876 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00022
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCT CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklv 50 
                 + + GaG++G + a++f   g+ V l++ +++ l    ++i++ l++  
  EGE26261.1 239 IIIYGAGVIGCEYASIFTGLGYVVDLINNKDQLLSYLDKEISDALSHDF 287
                 6789**********************************99999887655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00039      0.26      31      69 ..      68     106 ..      59     160 .. 0.85
   2 !   12.6   0.0   9.5e-05     0.063      30      95 ..     238     310 ..     229     318 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
                  EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C  31 vlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69 
                   +viG+G aG +A+   ++ g +V v+D r ++  +  +
   EGE26261.1  68 AIVIGAGPAGEAAAMKLAKSGHRVAVIDPRDQVGGNCAH 106
                  68**************************99987666655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 9.5e-05
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.....TTTCECEE.......HCHHHHHHHHHHHH-SEE CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.....lgakfvev.......lksqeellaeavkeadvv 95 
                  k+++ G+Gv G + +++ +glg +V +++ + + l +l++     l     +        + +++e++++   + d v
   EGE26261.1 238 KIIIYGAGVIGCEYASIFTGLGYVVDLINNKDQLLSYLDKeisdaL-----SHdfrqfgvRIRNHEEIDHLETHDDCV 310
                  899********************************99998643332.....222333344666666666655555555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.3e-07   8.7e-05      11      62 ..      59     109 ..      51     121 .. 0.85
   2 ?   -0.5   0.1      0.87   5.7e+02      13      33 ..     232     252 ..     226     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.3e-07
                 HHHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTST CS
        Thi4  11 dllkyaesDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGq 62 
                 ++ +  e D +++GaG++G +aa  lak+ + +va+++ +  +GG     G 
  EGE26261.1  59 KIKHNYEYDAIVIGAGPAGEAAAMKLAKS-GHRVAVIDPRDQVGGNCAHVGT 109
                 55666799*********************.**********999998766665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.87
                 HHHTEEEEEEE--SHHHHHHH CS
        Thi4  13 lkyaesDvvivGaGssGLtaa 33 
                 ++y+   ++i GaG  G   a
  EGE26261.1 232 MDYIARKIIIYGAGVIGCEYA 252
                 589999********9997666 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00025      0.17       2      42 ..      70     105 ..      69     137 .. 0.81
   2 !    8.2   0.0    0.0034       2.3      99     155 ..     274     331 ..     269     332 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00025
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvw 42 
                    ++GaGp+G a++ +L+++      +++ ++dp ++ g g ++
     EGE26261.1  70 VIGAGPAGEAAAMKLAKS-----GHRVAVIDPrDQVG-GNCA 105
                    8***************99.....599******44557.5544 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0034
  NAD_binding_9  99 Ylrdlfeellarlpegvtvevh.raevvdleeradgqavlladgaslaadaVvLAlGh 155
                    Yl++ ++++l+   +++ v++  ++e+  le+++d + ++l++g++++ada+  + G 
     EGE26261.1 274 YLDKEISDALSHDFRQFGVRIRnHEEIDHLETHDDCVVLHLKSGKKIKADAILWCNGR 331
                    666666666665545566777624588899999999*****************99995 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.4e-06   0.00094       2      34 ..      66      98 ..      65     103 .. 0.92
   2 ?    0.2   0.0      0.51   3.4e+02     102     165 ..     274     332 ..     256     351 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.4e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   +d +++GaGpaG  +a+ L++ G rv +++ r+
     EGE26261.1 66 YDAIVIGAGPAGEAAAMKLAKSGHRVAVIDPRD 98
                   7899*************************9765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.51
                    --HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT CS
  FAD_binding_3 102 ypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgr 165
                    y  +e+  +L+++ ++ g+++r ++e+  le +++    +v+  ++g++  ++a+ +  + G  
     EGE26261.1 274 YLDKEISDALSHDFRQFGVRIRNHEEIDHLETHDDC---VVLHLKSGKK--IKADAILWCNGRS 332
                    5667888999*****************966666655...5555555555..7777777777765 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   8.9e-05     0.059       3      31 ..      77     105 ..      75     108 .. 0.91
   2 ?    5.4   0.0     0.014       9.1     215     256 ..     282     325 ..     248     328 .. 0.87
   3 ?   -0.1   0.1      0.66   4.4e+02     406     448 ..     351     390 ..     340     393 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.9e-05
                    HHHHHHHHHHTTEEEEEEESSSSSBTTS- CS
  Amino_oxidase   3 GLaaArqLlsaGfdVtvlEardrvGGRir 31 
                    G aaA +L+  G++V v+  rd+vGG ++
     EGE26261.1  77 GEAAAMKLAKSGHRVAVIDPRDQVGGNCA 105
                    559***********************985 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.014
                    HHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEE CS
  Amino_oxidase 215 alae..elrgldirlntrVkeikregdgvtvtledgevveaDaV 256
                    al+   ++ g++ir  ++   +++++d v ++l++g++++aDa+
     EGE26261.1 282 ALSHdfRQFGVRIRNHEEIDHLETHDDCVVLHLKSGKKIKADAI 325
                    444455567999999999999999******************98 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.66
                    HHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHH CS
  Amino_oxidase 406 ghedydplakpegdprlffAGehtsreypgtvegAilSGlraA 448
                    g+++ d+ +++  +p ++  G+ +   +p+    A+  G++aA
     EGE26261.1 351 GQLEVDKTYRT-SIPHIYAVGDVIG--WPSLASAAYDQGRNAA 390
                    67888999999.***********99..***************9 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00027      0.18       2      34 ..      69     101 ..      68     210 .. 0.82
   2 ?    4.9   0.0     0.054        36       2      35 ..     240     296 ..     239     347 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00027
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa 34 
                 +++Gag+ ++a a  +a+ g rv v+dpr+++ 
  EGE26261.1  69 IVIGAGPAGEAAAMKLAKSGHRVAVIDPRDQVG 101
                 79***************************9865 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.054
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG.......................- CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa.......................t 35 
                 +i+Gag ++ + a++   lg+ v ++++++++                        +
  EGE26261.1 240 IIYGAGVIGCEYASIFTGLGYVVDLINNKDQLLsyldkeisdalshdfrqfgvrirN 296
                 89**************************99866666555555555544444444441 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0017       1.1      28      76 ..      57     105 ..      46     158 .. 0.85
   2 !    7.5   0.1    0.0035       2.3      32      70 ..     232     270 ..     222     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
                   CGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHH CS
  2-Hacid_dh_C  28 allgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeee 76 
                   + ++k  ++    +iG+G  G+a+a +l++ g +v ++d++ +   +++
    EGE26261.1  57 KNKIKHNYEYDAIVIGAGPAGEAAAMKLAKSGHRVAVIDPRDQVGGNCA 105
                   55566667777889**************************988655555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0035
                   S-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  32 kelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                    +   +++ i G+G IG + a +++++g  v  ++ + +
    EGE26261.1 232 MDYIARKIIIYGAGVIGCEYASIFTGLGYVVDLINNKDQ 270
                   556678999*******************99877777655 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0034       2.2       3      31 ..      70      98 ..      68     103 .. 0.90
   2 !    8.0   0.0    0.0031       2.1       1      78 [.     239     316 ..     239     327 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0034
                EES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA  3 ilGaGaiGsllaakLakagadvtlilrsr 31
                ++GaG  G   a kLak g+ v +i+ ++
  EGE26261.1 70 VIGAGPAGEAAAMKLAKSGHRVAVIDPRD 98
                9*********************9998765 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0031
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT.CEEEEEECEEECCHSCCCCS-ESEEEE-SSG CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg.geeilrppealsaeekselepidlvivtvKa 78 
                 i i GaG iG+ +a   +  g+ v li++++  l  l k+ ++  s++ +++ +r +++ + +  +  ++ d v++ +K+
  EGE26261.1 239 IIIYGAGVIGCEYASIFTGLGYVVDLINNKDqLLSYLDKEISDALSHDfRQFGVRIRNHEEID--HLETHDDCVVLHLKS 316
                 78***************99************66666998888888888776666666665555..344455555555555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00018      0.12       2      32 ..      69      99 ..      68     107 .. 0.89
   2 ?    1.9   0.0      0.38   2.5e+02       1      48 [.     239     286 ..     239     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00018
                EEES-SHHHHHHHHHHHH.TTEEEEEEESSHH CS
      TrkA_N  2 iiiGlGrvGrslaeeLse.ggkdvvvidkdee 32
                i+iG+G  G++ a +L + g+ +v vid +++
  EGE26261.1 69 IVIGAGPAGEAAAMKLAKsGH-RVAVIDPRDQ 99
                9*****************666.7*****9765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.38
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES- CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgd 48 
                 iii G+G +G + a  ++  g+  v +i ++++ +  l +e  +++ +d
  EGE26261.1 239 IIIYGAGVIGCEYASIFTGlGY-VVDLINNKDQLLSYLDKEISDALSHD 286
                 89***************99888.48888888888887777766666665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.5   1.9e-05     0.012       1      36 [.      67     100 ..      67     112 .. 0.91
   2 ?   -2.3   0.0       2.6   1.7e+03       2      36 ..     239     271 ..     239     303 .. 0.63
   3 ?   -2.6   0.0       3.2   2.2e+03      93     140 ..     283     330 ..     276     345 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    D +viGaGpAg + A +l  ak g +v +i++ +++
     EGE26261.1  67 DAIVIGAGPAGEAAAMKL--AKSGHRVAVIDPRDQV 100
                    789***************..***********99987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.6
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    +++ GaG  g+  A        g  v li+  ++l
     EGE26261.1 239 IIIYGAGVIGCEYASIF--TGLGYVVDLINNKDQL 271
                    57889999999988877..6777777777665555 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.2
  Lycopene_cycl  93 llerlvengvkllea.kvesveeeeageslvvleggrkirarlvvdarg 140
                    l +++ + gv+ ++   +++ e +++  ++  l+ g+ki+a +++   g
     EGE26261.1 283 LSHDFRQFGVRIRNHeEIDHLETHDD-CVVLHLKSGKKIKADAILWCNG 330
                    55555555555444314555554444.7778888999999988877776 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.17   1.1e+02       3      34 ..      66      95 ..      39     102 .. 0.79
   2 !   11.2   0.0   0.00022      0.15     132     205 ..     183     250 ..     150     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.17
  K_oxygenase  3 lDligiGiGpsnLsLailleevkkelkalfle 34
                 +D i iG+Gp+  + a+ l++     ++ +++
   EGE26261.1 66 YDAIVIGAGPAGEAAAMKLAKSG--HRVAVID 95
                 78888888888888888887777..5555555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00022
  K_oxygenase 132 lltveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaae 205
                   l+v  + +++ +++++ ++ +++vG++p+ Pe+l+ ++ ++rv+ s+++l+       +++i++ G+G  + e
   EGE26261.1 183 TLEVYIN-DQEPTKTITFNQAIIAVGSRPYRPEILD-FD-HPRVFDSDKILQMD---YIARKIIIYGAGVIGCE 250
                  5666664.45567888889999*************9.55.59*********987...68899999999977766 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.016        11      20      49 ..      67      95 ..      47     100 .. 0.79
   2 ?    6.0   0.0    0.0098       6.5      19      41 ..     237     259 ..     223     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.016
                EEEEE--SHHHHHHHHHHHHHTTTEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 20 kvllvGaGglGsellknLalsGvgkltlvD 49
                   ++GaG  G  +++ La+sG + + ++D
  EGE26261.1 67 DAIVIGAGPAGEAAAMKLAKSGHR-VAVID 95
                5689******************64.55555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0098
                 SEEEEE--SHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  19 skvllvGaGglGsellknLalsG 41 
                  k+ + GaG +G+e +  + ++G
  EGE26261.1 237 RKIIIYGAGVIGCEYASIFTGLG 259
                 589*************9998887 PP

>> ALC  Phage ALC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00024      0.16      48     107 ..     135     205 ..     116     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
         ALC  48 kkaikvraearlkqarellaelveeskvfleirlak...........ydlevyvtatlPdvhivsikssvl 107
                 k + +v   + l +are++   v+  k f+e ++ +           + levy++   P + i   ++ + 
  EGE26261.1 135 KDSYQVPLSKVLSRAREVIRHQVNTHKLFYERNQIQvihgwgsfidaHTLEVYINDQEPTKTITFNQAIIA 205
                 45566666778899*****************999999**********************999887776665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00088      0.58      10      40 ..      68      98 ..      64     193 .. 0.85
   2 ?   -0.3   0.0       2.2   1.5e+03       7      40 ..     236     269 ..     230     323 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00088
  NAD_binding_7 10 vlvvGgGevAarkvrklleagakvtvvapev 40
                    +v+G+G+ ++  + kl+++g +v v++p+ 
     EGE26261.1 68 AIVIGAGPAGEAAAMKLAKSGHRVAVIDPRD 98
                   68***************************93 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.2
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapev 40 
                     +k+++ G+G ++ + ++ +   g  v ++ ++ 
     EGE26261.1 236 ARKIIIYGAGVIGCEYASIFTGLGYVVDLINNKD 269
                    6899999**9999999998888888888888773 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0     0.002       1.3       6      41 ..      59      94 ..      55     101 .. 0.80
   2 ?    0.8   0.0      0.73   4.8e+02       9      37 ..     233     261 ..     226     303 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.002
                  HHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEE CS
  Shikimate_DH  6 kleslkekkvlliGaGemaelvakhLlakgvkkvvv 41
                  k+++  e  +++iGaG  +e +a +L+++g +  v+
    EGE26261.1 59 KIKHNYEYDAIVIGAGPAGEAAAMKLAKSGHRVAVI 94
                  4555667899******************99995555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.73
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-C CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvk 37 
                   ++  +k+++ GaG ++ + a+ +   g+ 
    EGE26261.1 233 DYIARKIIIYGAGVIGCEYASIFTGLGYV 261
                   566789**********9999988766655 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0041       2.7       5      31 ..      70      96 ..      67     104 .. 0.92
   2 ?    2.2   0.0      0.17   1.2e+02       2      42 ..     238     278 ..     237     300 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0041
                    EE--STTHHHHHHHHHHCTSEEEEE-S CS
  UDPG_MGDP_dh_N  5 viGlGYvGlvtaavlaeighevigvDi 31
                    viG+G  G   a+ la+ gh v ++D 
      EGE26261.1 70 VIGAGPAGEAAAMKLAKSGHRVAVIDP 96
                    9************************95 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.17
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTT CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsg 42 
                     ki + G+G +G   a ++  +g  v ++ + ++  + l ++
      EGE26261.1 238 KIIIYGAGVIGCEYASIFTGLGYVVDLINNKDQLLSYLDKE 278
                     899*******************9999888887777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 3772.11
//
Query:       EGE26262.1  [L=291]
Description: D-alanyl-D-alanine carboxypeptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-39  133.3   1.7    7.4e-39  132.6   1.7    1.4  1  VanY             D-alanyl-D-alanine carboxypeptidase
     0.0019   18.7   2.0      0.046   14.2   0.3    2.5  2  Peptidase_M15_4  D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> VanY  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   1.7   8.3e-43   7.4e-39       3     132 ..      90     219 ..      88     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 8.3e-43
                 EEEHHHHHHHHHHHHHHHHTT--EEEEE----HHHHHHHH.HHHHH.....HHHHHHHHHHS--TTT-GGGGTSEEEEEEGGGTT.--SCGGGHCHHHH CS
        VanY   3 klrkeaaealeellaaakkegielalvsgfRsverQeelfekksvk.....eeklkeilrvsalpGaSeHhtGlaiDisdkeaeetkleesfeetkafk 96 
                 k+++e++++l +++++a+k++i+l++vs+fRs++rQ++++e+k ++      +++k+il++sa pG+S+Hh+G+++D++++e+ +    +s e  k+++
  EGE26262.1  90 KIHPEVYNSLIDMIDKAQKDNIKLSVVSAFRSYQRQKQIWENKWGNrpnddINHAKNILKWSAFPGTSRHHWGTDVDFNSVETAY---WKSKEGVKVYN 185
                 799*************************************6666666998888999*************************9766...7999******* PP

                 HHHHHGGGGTEEESS-TTGHHHHSS---TTEEEE-G CS
        VanY  97 wlqknaakygFvlrypkgkeqetgvsyEpWHlrYvg 132
                 wlq+na+kygF+  y +g+++  g++ EpWH++Y++
  EGE26262.1 186 WLQNNAPKYGFCQTYDDGRQH--GYNSEPWHWSYMP 219
                 ****************99988..***********98 PP

>> Peptidase_M15_4  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.012     1e+02      22      64 ..      96     143 ..      87     145 .. 0.77
   2 !   14.2   0.3   5.1e-06     0.046       7      27 ..     156     184 ..     152     217 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
  Peptidase_M15_4  22 vnpywkalkpengeayadevvkifkklGf...eWGgdWksfk..DymH 64 
                      +n+ ++ ++++++++++  vv +f+++     +W  +W +++  D  H
       EGE26262.1  96 YNSLIDMIDKAQKDNIKLSVVSAFRSYQRqkqIWENKWGNRPndDINH 143
                      5666788888899998999******99977889999997665556666 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 5.1e-06
  Peptidase_M15_4   7 lSnHsyGlAiDinplvnpyw........k 27 
                       S+H +G+ +D+n ++  yw         
       EGE26262.1 156 TSRHHWGTDVDFNSVETAYWkskegvkvY 184
                      7**************999**444333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2352.93
//
Query:       EGE26263.1  [L=303]
Description: hypothetical protein EA1_05342 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-53  180.4   1.4    5.8e-53  180.2   1.4    1.0  1  Bestrophin  Bestrophin, RFP-TM, chloride channel
  ------ inclusion threshold ------
       0.34    9.6   2.3       0.53    9.0   2.3    1.2  1  DUF2207     Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   1.4   6.5e-57   5.8e-53       1     293 [.       1     281 [.       1     283 [. 0.88

  Alignments for each domain:
  == domain 1  score: 180.2 bits;  conditional E-value: 6.5e-57
  Bestrophin   1 evarsklrsflkllfrwkGsvyklilrelllflllyalvvllyrleerl.........fellsicelipLsfvLgFrvnavydRWweqrkllgwldkaa 90 
                 +++r+k ++ +kllf+w+G+v++++l+++l +++l+++  ++ +++  +         f+ +++     +s++LgFr+na+ydRWwe+rkl+g l+ ++
  EGE26263.1   1 MIVRDK-SNSFKLLFAWRGTVLPKVLPTILGIMVLSFIAGFVAQFQW-YyiatvpavgFTMFGV----IISIFLGFRNNACYDRWWEGRKLWGALVANT 93 
                 678999.99**********************************9322.1345556666777777....8****************************** PP

  Bestrophin  91 rslarqvrglsdeegrlarrtilrylvlllvlffralssrvrkrfptlehlleagllteeeakilenkywvplqWavsllrrlaerlkelakegrikdd 189
                 r l+r ++ l        +r+ l   +  ++lf+  l+ r+r+++ +  ++  ++ + ++  + l+++ + p +    +l+ ++++l +l ++g+++d 
  EGE26263.1  94 RHLSRDSHFLA-----PNERESL---LYQMLLFVAILRDRLRGQNIQRSQFGYTK-IDDHYLDWLDQQINAPQR----VLEAMQQQLIKLVQQGQMSDV 179
                 *********73.....4556666...5666677777889**********877777.7789999999********....99999999**********997 PP

  Bestrophin 190 qalkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldseidlylPvftllq............faffffGllkvaeqlenP 276
                   + ++++++ e+ + ++++ ri++tp+P+ Y+ +++ravy+++ +               lP f+l              ++++++Gl+++a qle+P
  EGE26263.1 180 I-YMTIQKHVIEMGGIQAGCDRIHSTPLPFPYSALLHRAVYCFCWA---------------LP-FGLQAvmgfwtpllvgfISYLLLGLDELARQLEEP 261
                 7.36******************************************...............77.7777777777788888899**************** PP

  Bestrophin 277 FGedddDlelnal...idrn 293
                 FG d  Dl+l+++   i+r+
  EGE26263.1 262 FGFDHHDLALDMMvrmIERE 281
                 *************8888876 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.3   5.9e-05      0.53     386     464 ..      27     108 ..       8     119 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 5.9e-05
     DUF2207 386 lglgliilglilillallllvlllvfllilllillliaiivlllfsrllgrrteeGaellakwkgFkkyLe...Dfsefker 464
                  +lg+++l++i++++a ++ +++ +  ++ ++++++i++i+l +     + r  eG++l++ + +  ++L+   +f++ +er
  EGE26263.1  27 TILGIMVLSFIAGFVAQFQWYYIATVPAVGFTMFGVIISIFLGFRNNACYDRWWEGRKLWGALVANTRHLSrdsHFLAPNER 108
                 5678888999999988888888899999999999999999999999999999************999999975555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2152.61
//
Query:       EGE26264.1  [L=238]
Description: nucleotidyl transferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-24   86.8   0.0    7.8e-22   78.1   0.0    2.0  2  NTP_transferase  Nucleotidyl transferase
    7.6e-13   49.1   0.0      1e-12   48.7   0.0    1.4  1  NTP_transf_3     MobA-like NTP transferase domain
    0.00065   19.7   0.0     0.0013   18.8   0.0    1.4  1  CTP_transf_3     Cytidylyltransferase
    0.00081   19.2   0.0     0.0013   18.5   0.0    1.3  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   1.7e-25   7.8e-22       2     154 ..       5     157 ..       4     170 .. 0.87
   2 !    7.1   0.0    0.0008       3.6     210     245 ..     197     229 ..     175     232 .. 0.72

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1.7e-25
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTS...GGGTSEEEEEEES.S--BGGHHHH CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkeg...skfgvevlialep.egkgtAdAva 91 
                      a+ILa G+GtR++PLt t +k+l+p++gk +li   ++rla +g+++ iv+ t++ s+ + ++lk+    +kfg+e+l ++e+ e+ +tA+ ++
       EGE26264.1   5 AMILAAGKGTRMRPLTLTKPKPLIPIAGK-PLIVWHIERLATAGVHR-IVINTSYLSEVLLTELKTLnlsKKFGIEILLSIEQgEPLETAGGIR 96 
                      89***************************.*****************.************999998722246779998876651666******* PP

                      HTHHHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC CS
  NTP_transferase  92 laaelledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGviead 154
                       a++     +    ++ ++gD++++ ++ ++v +  +k  + ++++   +++++ ++G+i+ +
       EGE26264.1  97 FALDQGLLCDL--PFILINGDIWTEFEFDRLVHHQLNKHLAHLILVDNPKHHPEGDFGLIKEK 157
                      99987665554..7999**********************988******************976 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0008
                      HHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHHHHH CS
  NTP_transferase 210 kaleegkvalaflfkdaeyWsDvGtldslleanekl 245
                       a++++ v  +++ +    W+DvGtld l + ++ +
       EGE26264.1 197 SAINQQLVSGEHMTD---HWMDVGTLDRLAKTEAYV 229
                      445555555554443...4********999877655 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   2.2e-16     1e-12       1      98 [.       5     109 ..       5     183 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 2.2e-16
                   EEEEEESS-TTTT.....TTHHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..C......HHHHHHTTCTS-EEE-TTSS..-SHHHHHHHHHHH CS
  NTP_transf_3   1 aviLAGGrSsRmg.....gdKallplggkpllervldalraagvdevvvvggd..e......evlaalarlgvrvvededpg..kgplaslaaalra 82 
                   a iLA+G+++Rm      ++K+l+p++gkpl+ +++++l+ agv+++v+++ +  e      + l+  +++g++++   ++g    ++++++ al++
    EGE26264.1   5 AMILAAGKGTRMRpltltKPKPLIPIAGKPLIVWHIERLATAGVHRIVINTSYlsEvlltelKTLNLSKKFGIEILLSIEQGepLETAGGIRFALDQ 101
                   68**********7554435*********************************974322222222224466688888776664235888888888876 PP

                   H.SSSCEEEEETT-TT CS
  NTP_transf_3  83 aadadavlvlacDmPl 98 
                            l+cD+P+
    EGE26264.1 102 G--------LLCDLPF 109
                   3........5566665 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.8e-07    0.0013      15      48 ..      24      56 ..      22      79 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.8e-07
                  TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES CS
  CTP_transf_3 15 gKnlldlggkpliayvleaalkskafekvivaTD 48
                   K+l++++gkpli + +e++  +++ +++++ T+
    EGE26264.1 24 PKPLIPIAGKPLIVWHIERLATAGV-HRIVINTS 56
                  6*********************998.99***996 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.9e-07    0.0013       3      52 ..       5      56 ..       3      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.9e-07
                EEEECTTSSCTT-...SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE- CS
        IspD  3 vvipAAGsGkRmk...aglpKqflelkgqtllehtvdallaskavdkivvvvs 52
                ++i AAG+G+Rm+     +pK ++ ++g++l+ + ++ l+    v++iv+  s
  EGE26264.1  5 AMILAAGKGTRMRpltLTKPKPLIPIAGKPLIVWHIERLAT-AGVHRIVINTS 56
                7899*******97333689******************9988.78999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2059.31
//
Query:       EGE26265.1  [L=346]
Description: aminoglycoside phosphotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-25   88.2   0.0    1.1e-24   87.7   0.0    1.2  1  APH             Phosphotransferase enzyme family
      6e-05   22.7   0.1    9.5e-05   22.1   0.1    1.3  1  Choline_kinase  Choline/ethanolamine kinase
     0.0006   19.2   0.6     0.0012   18.2   0.5    1.5  1  EcKinase        Ecdysteroid kinase
  ------ inclusion threshold ------
      0.046   12.6   0.1       0.06   12.2   0.1    1.2  1  DUF1679         Protein of unknown function (DUF1679)


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   2.4e-28   1.1e-24       2     222 ..      23     243 ..      22     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 2.4e-28
                 EEEE--.SSCEEEEEE.....ETT-......-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE.EEEEEE----EE-SS..HH CS
         APH   2 vrelsggasnrtylvt.....tpag......ryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigl.lfalieyvpgrsllr..kl 86 
                 v+ lsg+as+r+y++      +         +y+l+++pp   +e+i+++ ++   ++++ v vP + a+d+  ++++l  f  +e+  +    +  + 
  EGE26265.1  23 VESLSGDASFRRYHRIylpmrG--EvgghemTYLLMDAPPD--KESIQDFIHVAGIMSET-VNVPDIMACDEAMGFLLLqDFGTVEF--A----HaiAK 110
                 6889************666651..0445678**********..*****************.********655555555455555555..3....33444 PP

                 HHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..T CS
         APH  87 saaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarllaselld.lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpdd 184
                 + + ++ ++ ++ ++la+l+ + +a + + +  ++ + +  ++ ++  ++l   l + ++++ e+ + ++l       +p+v++H+D+h++Nl++d++ 
  EGE26265.1 111 DTDNKDGYYTKALQTLAQLQTIKGA-DLPKYSNEKLAQEMDLFSEWFLPYLGIGLTQkDAQKWES-LKQTLIMQIN-KQPQVIVHRDYHSRNLMMDKGS 206
                 78999*****************655.555555556699999999**9999999999955555555.7777777777.5******************999 PP

                 TEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHH CS
         APH 185 grvtGviDfedaglgpplyDlavllrswtseldpefla 222
                 +++ GviDf+da++g ++yDl++l+r+ + +  + +++
  EGE26265.1 207 DHL-GVIDFQDAVIGAYTYDLVSLVRDAYIDYNEVWAQ 243
                 **9.*********************8877776666665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   2.1e-08   9.5e-05     133     199 ..     174     242 ..     117     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.1e-08
                     THHHHH..HCHGG-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHHHHHHTTEEHHHCST CS
  Choline_kinase 133 klekll..eelespvvfcHnDlqegNillnkeekklvlIDFEYagynyrgfDlanhfiEwagdyeeeea 199
                     +l++ l  + +++p v  H D  ++N++++k  ++l +IDF  a +    +Dl   + ++ +dy+e  a
      EGE26265.1 174 SLKQTLimQINKQPQVIVHRDYHSRNLMMDKGSDHLGVIDFQDAVIGAYTYDLVSLVRDAYIDYNEVWA 242
                     333333234778889*************************************************98654 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.5   2.6e-07    0.0012     206     260 ..     179     229 ..     101     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.6e-07
    EcKinase 206 lveekeeefnvlnHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDLlyf 260
                 l+ + +++ +v++H D++++N+m+   +    +++  +DFQ + +g  + DL+ +
  EGE26265.1 179 LIMQINKQPQVIVHRDYHSRNLMMDKGS----DHLGVIDFQDAVIGAYTYDLVSL 229
                 2336677779**************7765....589*****************865 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.3e-05      0.06     267     314 ..     187     230 ..     109     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
     DUF1679 267 kkvlvhgDlwsaNiLfseeeegklklkkviDyQlvslgnpaeDlvrll 314
                  +v+vh+D  s N++  + ++       viD+Q + +g    Dlv l+
  EGE26265.1 187 PQVIVHRDYHSRNLMMDKGSD----HLGVIDFQDAVIGAYTYDLVSLV 230
                 47****************888....5579***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2959.35
//
Query:       EGE26266.1  [L=926]
Description: LPS-assembly protein precursor [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-54  185.2  10.0    2.2e-54  185.2  10.0    2.2  2  LptD      LPS transport system D
    9.8e-08   32.2   7.1    4.2e-05   23.7   2.0    2.3  2  OstA      OstA-like protein
     0.0095   15.5   0.1      0.025   14.2   0.1    1.7  1  LptC      Lipopolysaccharide-assembly, LptC-related


Domain annotation for each model (and alignments):
>> LptD  LPS transport system D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.14   8.6e+02      67     121 ..      48     102 ..       4     130 .. 0.67
   2 !  185.2  10.0   3.6e-58   2.2e-54      13     387 .]     447     837 ..     441     837 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.14
                 EEEEEES...STTS---EEEEEEEEEEEEEEEETT....TEEEEEEEEEEEEEESSTT CS
        LptD  67 aqdyqllsnteesndtPyqrlPqldfnyykpdlveg...glefsfeaqavnferrdgt 121
                 a + ++l   ++ n++P + +  ld++++ +d   +   g++f++ +q    + +++ 
  EGE26266.1  48 ADSSKNL--PDTPNTKP-NTVLALDAHLQSHDDTANafdGFDFEVITQQAAEQTSSQA 102
                 5566666..88899999.7777899999988888777888888888877765555433 PP

  == domain 2  score: 185.2 bits;  conditional E-value: 3.6e-58
                 ECTTTEE........EEEEEEEESSTTHHHHT--SSS-TT-SCEEEEEEEEEEETTEEEEEEEEEEEES.........STTS---EEEEEEEEEEEEEE CS
        LptD  13 rlndnwr........lgvdynyvSDknYfrdfdsngglvsqtqLtqsgrlsYrnrnwdfslraqdyqll......snteesndtPyqrlPqldfnyykp 97 
                 +++ +w+        ++  y+ vSD+nY++df+  g  + +++L ++ + s   +n +++lr++d+q l      +  ++++d Py rlPql +ny+ p
  EGE26266.1 447 QFDHTWQpkqfdkitTYAQYQSVSDANYLSDFNALGVESAKLNLPRRIGTSFLDENISADLRFEDFQRLdgfgldGRPITDKDRPYARLPQLSVNYRLP 545
                 4444555555555559*********************************************************************************** PP

                 EETT....TEEEEEEEEEEEEEESSTTS-....EEEEEEEEEEEEEEEE-SSEEEEEEEEEE..EEEEEEE-CCHHHHCCCCH---SEEEEEEEEEEEE CS
        LptD  98 dlveg...glefsfeaqavnferrdgtqp....tgsRlhlepeislpfstpyglltpelklr..qtaYdldtnlqskerakgldldssvnrslpdfsvd 187
                 + + g   gle  +  ++ +f+++ +++     +g+R+  + + s+p+ +++g+ltp+l+l   +t Yd d+ ++++ +    +++  ++   p++s+d
  EGE26266.1 546 RIWMGtpsGLELGGIHNSAYFKKSIKDNSepekSGGRIFNQFTASYPLLRSWGYLTPKLSLThlYTSYDEDSLADQNIA----KKNGHHSVFAPTVSLD 640
                 ************************9999999*******************************99999**9888875432....7999************ PP

                 EEE-EEEEECCT....TCCEEEEEEEEEEEEEE----GCCS.-SS--B----SGGGC-S-SCSSSS----EEEEEEEEEEEEEETTTTEEEEEEEEEEE CS
        LptD 188 sglpferdttlf....gksytqtlePraqylyvPyrdqnnlpnyDssslsfdytnlFrdnrfsGlDriedanqltlgvtsrlidknggferlrlsvGqs 282
                 +gl fe+  + f    +++++q+l Pr+ y+y+P +dq n+pn+ ++  + +y++l++ n f G Dri+d   +t +v++r idk g + r+   +++ 
  EGE26266.1 641 AGLFFEKAGAPFgmhqDTGGYQVLTPRLHYTYTPFKDQHNVPNFETKIAQLSYEQLLNNNWFLGHDRIQDLHAVTPAVSYRYIDKMG-RTRFEGGIAEQ 738
                 **********99999999*********************************************************************.69********* PP

                 EESS----S----TTS-SSSCEEEEEEEEEEEECTTEEEEEEEEEETTTTEEEEEEEEEEEESSTTSEEEEEEEEE-HHCCCHCTTCCCEEEEEEEEEE CS
        LptD 283 fyledrrvflnsgdesglkrdksdlvaeldfrpndglslssriqydpytseferaevslsykpergksislgYryrredpeynrstnngikqiglsatl 381
                 + l+  rv    +d+ +  +++s l+  ++ +p d+l +++++ +++ + +++++ ++++y+p  +k+++lg  +r+e+   n+s    ++  ++sa +
  EGE26266.1 739 ILLSHIRVGI--NDSESYSSRSSGLAWQASLQPKDNLWFDASGSFRT-NYDLSSIVAQIRYRPSDRKLFNLGIVKRKENRAFNQSA---LSAYTASAIF 831
                 ********99..677788888*************************5.5789999************************9999874...9********* PP

                 E-TTTE CS
        LptD 382 plavnw 387
                 p++++w
  EGE26266.1 832 PINNRW 837
                 *****9 PP

>> OstA  OstA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.3   7.6e-08   0.00046      65     112 ..     190     236 ..     168     237 .. 0.85
   2 !   23.7   2.0     7e-09   4.2e-05       3     112 ..     197     334 ..     196     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7.6e-08
        OstA  65 vgeqirGkAerieydskkeiivLtgnatltqnsnsveGseitydikee 112
                 ++  i ++A+ + yd ++ +++L+gn+ ++qn+ +v+++++t d++++
  EGE26266.1 190 TEDGIFAQADYGYYD-AQTYAELSGNVIMEQNGRRVTADKLTLDTQTG 236
                 556677999*99999.6667*************************997 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 7e-09
        OstA   3 eAdkaelddkkkvavftGnVvvtqGnltlkAdkvtvtqdkk........................skkierleakgtatfrqkvdlvgeqirGkAerie 77 
                 +Ad   +d ++  a ++GnV++ q+ ++++Adk+t+ ++ +                          +   + + g++ + q+v + + +i++++   +
  EGE26266.1 197 QADYGYYDAQTY-AELSGNVIMEQNGRRVTADKLTLDTQTGqatasgqvqfsdggasdhsagiigMAENLVYHTDGQTATAQDVAFASTTINAHGYASQ 294
                 578888888888.9**********************999999*********************985556666666778888888888888876665555 PP

        OstA  78 yd.skkeiivLtgnatlt.....qnsnsveGseitydikee 112
                  d  + ++++L+ ++++t     + ++ +  + i ++++++
  EGE26266.1 295 MDkISSSEYRLQ-HVMFTtcpptERKWYLDTDSIDINTDTG 334
                 55334556****.****99***99**********9999987 PP

>> LptC  Lipopolysaccharide-assembly, LptC-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   4.1e-06     0.025      88     155 ..     196     257 ..     167     273 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-06
                 EE-SEEEE-T.TSEEEEEEEEEEEE-SSS-SEEEEEEEEEEEETTT-EEEEEEEEEEEESS-EEEEEE CS
        LptC  88 vtAkkAkltkkgqeleLegnVviqsltkksrlqtitTeeltvnlktkdittdqpVkitgpnfsttGvg 155
                 ++A+ + +++ +   eL+gnV ++++       ++t+++lt++++t ++t   +V++++++ s ++ g
  EGE26266.1 196 AQADYGYYDA-QTYAELSGNVIMEQN-----GRRVTADKLTLDTQTGQATASGQVQFSDGGASDHSAG 257
                 6999***999.***************.....779************************9998655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (926 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 6494.69
//
Query:       EGE26267.1  [L=434]
Description: peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-35  122.4   0.0      2e-26   92.8   0.0    2.7  2  Rotamase    PPIC-type PPIASE domain
    8.7e-32  110.1   0.2    1.5e-26   93.2   0.1    2.5  2  Rotamase_3  PPIC-type PPIASE domain
    1.3e-12   47.8   8.7    1.5e-12   47.6   6.6    2.2  2  SurA_N      SurA N-terminal domain
    1.5e-12   48.4   3.2    3.6e-05   24.6   0.0    3.1  3  Rotamase_2  PPIC-type PPIASE domain
    4.2e-08   33.1   6.1    4.2e-08   33.1   6.1    3.2  4  SurA_N_3    SurA N-terminal domain
      2e-06   27.7   4.7      2e-06   27.7   4.7    3.1  3  SurA_N_2    SurA N-terminal domain
  ------ inclusion threshold ------
       0.11   12.7   3.2       0.74   10.0   0.3    2.4  2  DUF3333     Domain of unknown function (DUF3333)
        4.3    7.4   5.4          3    7.8   0.1    3.3  4  PilX_N      PilX N-terminal


Domain annotation for each model (and alignments):
>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.2e-09   7.2e-06       1      96 [.     185     280 ..     185     281 .. 0.88
   2 !   92.8   0.0   8.7e-30     2e-26       1      97 []     297     389 ..     297     389 .. 0.98

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.2e-09
                 EEEESSCCS.E----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEEE CS
    Rotamase   1 HILlkvkek.asekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikle 96 
                 HI + + ++ ase++r++a   ae+++++l +g + ++++ ++   d+    +g d g ++   lpp+++ ++ +l+ G+ s+p+ t +G  i+k++
  EGE26267.1 185 HIRVPYLDNtASEQNRQQAALVAERVKSSLDAGMN-LDQAMQNARGDYTPDLQGADTGLINATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVV 280
                 6666555555899********************99.77766666668888999******************************************96 PP

  == domain 2  score: 92.8 bits;  conditional E-value: 8.7e-30
                 EEEESSCCSE----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEEE- CS
    Rotamase   1 HILlkvkekasekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikled 97 
                 HIL ++++   +++++ a++k+++i++ql++g+d F +lA  ySdd++sa++ G+lgwv++g+++pefe+++++  kG+ s+p++++fG+hi+k++d
  EGE26267.1 297 HILARIDS---NQSSDIAEQKINAIYQQLQQGAD-FGTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNTAKGDFSTPFRSQFGWHILKVND 389
                 9******9...999999*****************.***********************************************************985 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.8e-05     0.041      15     115 ..     180     282 ..     169     283 .. 0.88
   2 !   93.2   0.1   6.7e-30   1.5e-26      15     115 ..     292     390 ..     283     391 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.8e-05
  Rotamase_3  15 svkvshIlistkg..kesrseeeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHiik 111
                 + ++ hI + + +  +++++ ++a   a+ + + l++g +  ++ ++   D +   +G + g ++++++ ++   +v +l +g++s ++ t  G+ i+k
  EGE26267.1 180 QYRLLHIRVPYLDntASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQGADTGLINATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVK 278
                 6677899999988554555566668889*********************************************************************** PP

  Rotamase_3 112 vtdk 115
                 v +k
  EGE26267.1 279 VVNK 282
                 *998 PP

  == domain 2  score: 93.2 bits;  conditional E-value: 6.7e-30
  Rotamase_3  15 svkvshIlistkgkesrseeeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHiikvt 113
                 + + shIl +   ++++s + a++k++ ++++l++gadF +lA++ySdD++s+++ G+lgw+++g+mv+eFe+++ +++kg+ s +++++fG+Hi kv 
  EGE26267.1 292 KWQTSHILARI--DSNQSSDIAEQKINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNTAKGDFSTPFRSQFGWHILKVN 388
                 56789***998..567888889****************************************************************************9 PP

  Rotamase_3 114 dk 115
                 d 
  EGE26267.1 389 DI 390
                 86 PP

>> SurA_N  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   6.6   6.6e-16   1.5e-12       2     115 ..      32     146 ..      31     149 .. 0.89
   2 ?   -1.6   0.0       1.2   2.7e+03      58      77 ..     150     169 ..     144     185 .. 0.72

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 6.6e-16
      SurA_N   2 drivavvnddvvlqseldervkevkkqlakqgkqlPpeavLerqvlerlilekiqlqeaektgirvddeelnqaiaeiAkeNkl.tldqlraalaed.G 98 
                 d ivavvnd+++l+sel+++++ v ++++k+g ++ ++ + +   l+ li ek+ql+  +++g+  +de ++q + +iA++ ++ +l++++++l+++  
  EGE26267.1  32 DGIVAVVNDEIILKSELNQATELVATEIQKNGGNVTQD-QAQTLALDELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVnSLSEFQSKLDAErA 129
                 78*****************************9999765.567889***********************************987648********98724 PP

      SurA_N  99 lsydefreqiRkEiiis 115
                  sy+++r ++ ++ +i+
  EGE26267.1 130 GSYAALRANLIQDAAIQ 146
                 58999999987776665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
      SurA_N  58 qeaektgirvddeelnqaia 77 
                 q+  ++ +r++d+++++ ++
  EGE26267.1 150 QNQIQSRVRITDDQIDAFLS 169
                 55667789999999987665 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3       1.2   2.6e+03      50      89 ..      54      99 ..      35     145 .. 0.55
   2 !   23.0   0.1     5e-08   0.00011      46     110 ..     213     284 ..     159     288 .. 0.63
   3 !   24.6   0.0   1.6e-08   3.6e-05      35     111 ..     314     393 ..     299     400 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.2
  Rotamase_2 50 dfaalakgnskkaadlgifesa......snlpeelakaafalkpge 89
                 +a+  ++n+ +++++++ + a      ++l  +++++a   + +e
  EGE26267.1 54 LVATEIQKNGGNVTQDQAQTLAldelinEKLQLAIINRAGVIPNDE 99
                3444444444444443333333333333333334444443333333 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 5e-08
  Rotamase_2  46 g......aekdfaalakgnskk..aadlgifesasnlpeelakaafalkpgevsgpvetdngyyivkvtevkp 110
                         +++++++  +++ +   ad+     a+ lp+++a+++++l  g++s p+ t ng+ ivkv ++++
  EGE26267.1 213 SldagmnLDQAMQNARGDYTPDlqGADT-GLINATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQ 284
                 2443332223333333333333312222.23334779*******************************99875 PP

  == domain 3  score: 24.6 bits;  conditional E-value: 1.6e-08
  Rotamase_2  35 aaeaalalakagae.kdfaalakgnskkaadlg...ifesasnlpeelakaafalkpgevsgpvetdngyyivkvtevkpa 111
                 +  a+ +++++ga+  ++aa  ++++ +a++ g   ++ + + +p e+++ ++++ +g++s p+++++g++i+kv+++k+ 
  EGE26267.1 314 KINAIYQQLQQGADfGTLAATYSDDTGSASQHGslgWVNEGDMVP-EFETMMKNTAKGDFSTPFRSQFGWHILKVNDIKQH 393
                 444567777777644666666666555544433455766666555.*******************************9975 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   6.1   1.9e-11   4.2e-08      14     160 ..       7     147 ..       2     149 .. 0.79
   2 !    6.9   1.8    0.0023       5.1      45     119 ..      97     170 ..      97     181 .. 0.89
   3 ?   -1.2   0.9      0.67   1.5e+03      34      51 ..     260     278 ..     242     324 .. 0.73
   4 ?   -3.0   0.0       2.4   5.3e+03      43      61 ..     386     402 ..     373     424 .. 0.66

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.9e-11
    SurA_N_3  14 akillgliilaFvlwGvgsylsgsg.nsvakVngekIsraefqqayrrqleqlrqqlggnldaelldelglrqqvldqlidealllqeakklglsvsde 111
                 +k l +++i    l+   s++++s  + va Vn+e I ++e++qa + +  ++++ +ggn++++++++      +ld+li+e+l l+  ++ g+   de
  EGE26267.1   7 IKTLTAAVISCTSLVSQASISGNSHdGIVAVVNDEIILKSELNQATELVATEIQK-NGGNVTQDQAQT-----LALDELINEKLQLAIINRAGVIPNDE 99 
                 4444444443333456666666666355********************9999876.789999888766.....79************************ PP

    SurA_N_3 112 evakeiasipaFqedGkFdkerYkqlLaangl.tpeefeaslredlllqk 160
                  +++++ +i   q +G  +  +++  L a +  + ++++a+l +d ++q 
  EGE26267.1 100 VIDQQLLQIA--QSQGVNSLSEFQSKLDAERAgSYAALRANLIQDAAIQA 147
                 *********9..77899999999999986553277888888888777775 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0023
    SurA_N_3  45 ngekIsraefqqayrrqleqlrqqlggnldaellde.lglrqqvldqlidealllqeakklglsvsdeevakeias 119
                 n+e I ++ +q a ++ ++ l++ ++ +ldae + + ++lr + +++   +al++++ +  +++++d+++++ ++s
  EGE26267.1  97 NDEVIDQQLLQIAQSQGVNSLSE-FQSKLDAERAGSyAALRANLIQDAAIQALWQNQIQS-RVRITDDQIDAFLSS 170
                 89999999999999999999987.779******999999***************999975.7999****9998766 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.67
    SurA_N_3  34 lsgsg.nsvakVngekIsr 51 
                   g++ +++++Vng +I +
  EGE26267.1 260 TIGQTsTPIVTVNGIDIVK 278
                 4444436699999988865 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.4
    SurA_N_3  43 kVngekIsraefqqayrrq 61 
                 kVn+  I+++++ ++yrr 
  EGE26267.1 386 KVND--IKQHDITEQYRRN 402
                 5554..5566666666653 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   4.7   9.1e-10     2e-06      11     123 ..       5     112 ..       1     133 [. 0.83
   2 ?    0.5   0.2      0.22     5e+02      83     121 ..     133     170 ..     115     181 .. 0.56
   3 ?   -0.7   0.3      0.52   1.2e+03      29      51 ..     254     276 ..     242     321 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 9.1e-10
    SurA_N_2  11 llviiiglallaFilgdlfgvgsylfssssnevaeVnGekIslqefqqaveearqqlqqqlgenfdeseedeaqlreqvldqlvseklleqeaeklGlt 109
                 ++++ +  a+++     l+++ s++++s++  va Vn+e I  +e++qa e    ++q++ g n+++      q++  +ld+l++ekl    ++++G+ 
  EGE26267.1   5 FIIKTLTAAVISCT--SLVSQASISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKN-GGNVTQ-----DQAQTLALDELINEKLQLAIINRAGVI 95 
                 67777777778777..788888888888****************************9997.999988.....8999*********************** PP

    SurA_N_2 110 vsdeelqdaiqg...np 123
                   de +++++ +   ++
  EGE26267.1  96 PNDEVIDQQLLQiaqSQ 112
                 99999999999955333 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.22
    SurA_N_2  83 aqlreqvldqlvseklleqeaeklGltvsdeelqdaiqg 121
                 a lr + +++   ++l+++++++  ++++d+++++++++
  EGE26267.1 133 AALRANLIQDAAIQALWQNQIQS-RVRITDDQIDAFLSS 170
                 34455555555555555555553.577777777777766 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.52
    SurA_N_2  29 fgvgsylfssssnevaeVnGekI 51 
                  +v++ + +++s+ +++VnG +I
  EGE26267.1 254 AKVDKLTIGQTSTPIVTVNGIDI 276
                 56777778889999999999887 PP

>> DUF3333  Domain of unknown function (DUF3333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2     0.056   1.3e+02      78     127 ..      52     104 ..      34     119 .. 0.83
   2 ?   10.0   0.3   0.00033      0.74      38     113 ..     142     214 ..     134     231 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.056
     DUF3333  78 eklirdalkaklpeve.errekrelaelissgaayqlrdr..vladpsligtt 127
                 ++l+++ ++++ ++v+ +++++ +l eli+++ + ++ +r  v+ + ++i+++
  EGE26267.1  52 TELVATEIQKNGGNVTqDQAQTLALDELINEKLQLAIINRagVIPNDEVIDQQ 104
                 679999999999999989999999999****9999985543388888888876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00033
     DUF3333  38 skGltAFtqteitleveldaeeidpkgkaeeskklatanyeklirdalkaklpeveerrekrelaelissgaayql 113
                   +++A++q++i+  v ++ ++id+  ++ es++l++++y+ l  +  +      + ++++r+ a+l+ ++++  l
  EGE26267.1 142 DAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLNQVQYRLLHIRVPYLDN---TASEQNRQQAALVAERVKSSL 214
                 56899*******************9986567788888888766443322222...234555666666666666555 PP

>> PilX_N  PilX N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0014         3      20      42 ..      14      36 ..      13      43 .. 0.93
   2 ?   -3.8   0.0       5.9   1.3e+04      38      48 ..     101     111 ..      99     112 .. 0.79
   3 ?   -1.2   0.0      0.88     2e+03      14      25 ..     135     147 ..     134     152 .. 0.82
   4 ?   -1.6   0.3       1.2   2.6e+03      33      47 ..     194     208 ..     193     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
      PilX_N 20 vatiqgslleerlsandrdriqa 42
                v ++++ ++++++s+n +d+i a
  EGE26267.1 14 VISCTSLVSQASISGNSHDGIVA 36
                789****************9987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.9
      PilX_N  38 driqafqaAEa 48 
                 + +q +q+A++
  EGE26267.1 101 IDQQLLQIAQS 111
                 67899999998 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.88
      PilX_N  14 v.ltllgvatiqg 25 
                 +  +l++ a+iq+
  EGE26267.1 135 LrANLIQDAAIQA 147
                 6679*******98 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.2
      PilX_N  33 sandrdriqafqaAE 47 
                 +a+++ r+qa ++AE
  EGE26267.1 194 TASEQNRQQAALVAE 208
                 58999*****99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3315.41
//
Query:       EGE26268.1  [L=322]
Description: putative peptidase M23B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-17   61.8   1.3    2.1e-16   59.9   0.2    2.1  2  Peptidase_M23  Peptidase family M23
    2.4e-12   46.7   4.8    3.5e-12   46.2   1.1    2.4  2  LysM           LysM domain
  ------ inclusion threshold ------
      0.032   14.2   1.3       0.97    9.4   0.1    3.3  3  RnfC_N         RnfC Barrel sandwich hybrid domain
       0.11   12.4   0.2        2.8    7.8   0.0    2.7  3  Biotin_lipoyl  Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.18   7.9e+02      60      73 ..      72      85 ..      59      99 .. 0.73
   2 !   59.9   0.2   4.6e-20   2.1e-16       3      96 .]     226     317 ..     224     317 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.18
                   TEEE-TTCEEEEEB CS
  Peptidase_M23 60 gqkVkaGqvIGtvg 73
                     +Vk+G+++ ++ 
     EGE26268.1 72 RYQVKQGDTVSKIA 85
                   45677777776665 PP

  == domain 2  score: 59.9 bits;  conditional E-value: 4.6e-20
                    ESSEEEEETTT-EEEESSSEEEEEEEEETTT.EEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETTEEE-C CS
  Peptidase_M23   3 hkGidiaapkgtpVlAaadGtVvfagkkegy.GnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkngkavdp 96 
                    ++G+ ++   g+ + A ++GtV++a+ +  + G  ++i+h++g+++ y h+++ +vk+g++V++Gq I+ + ++  s +    f+i +ng +vdp
     EGE26268.1 226 SNGMWFSGRDGDLINASNAGTVIQADHN--MdGASIVIQHTNGFVSSYIHIKDAQVKTGDTVRTGQRIASMKNQP-SGAALFEFRISRNGVYVDP 317
                    579999999****************995..55****************************************888.88999************98 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   1.1   7.7e-16   3.5e-12       1      43 [.      73     115 ..      73     116 .. 0.96
   2 ?    1.3   0.1      0.08   3.6e+02       2       9 ..     278     285 ..     277     287 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 7.7e-16
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLki 43 
                 Y Vk+GDT+++IA+ryg++++++   Nnl+s+ +i+ Gq L++
  EGE26268.1  73 YQVKQGDTVSKIAQRYGLNWREIGHINNLNSSYTIYTGQWLTL 115
                 99*************************************8875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.08
                 EE-TT--H CS
        LysM   2 tVkkGDTL 9  
                  Vk+GDT+
  EGE26268.1 278 QVKTGDTV 285
                 5******7 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.088     4e+02      37      54 ..      66      83 ..      60      91 .. 0.83
   2 ?   -0.9   0.0      0.36   1.6e+03      68      81 ..     238     251 ..     196     272 .. 0.66
   3 ?    9.4   0.1   0.00022      0.97      44      63 ..     277     296 ..     273     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.088
      RnfC_N 37 hiGapakplvkvgdkVlk 54
                + G p++  vk+gd+V k
  EGE26268.1 66 SQGVPNRYQVKQGDTVSK 83
                56999999*******986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.36
      RnfC_N  68 pvhasvsGtVkaie 81 
                  + as +GtV++ +
  EGE26268.1 238 LINASNAGTVIQAD 251
                 47888888887654 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00022
      RnfC_N  44 plvkvgdkVlkGqkiaeaeg 63 
                 + vk gd+V++Gq+ia+ ++
  EGE26268.1 277 AQVKTGDTVRTGQRIASMKN 296
                 569*************9876 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.076   3.4e+02      17      29 ..      71      83 ..      60      85 .. 0.77
   2 ?   -2.1   0.0       0.8   3.6e+03      23      37 ..     235     249 ..     219     254 .. 0.60
   3 ?    7.8   0.0   0.00062       2.8      11      36 ..     271     294 ..     265     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.076
                   CSESSSTTCEE-T CS
  Biotin_lipoyl 17 vevlvkvGdkVka 29
                    ++ vk+Gd+V++
     EGE26268.1 71 NRYQVKQGDTVSK 83
                   4688999**9986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.8
                    TTCEE-TTSEEEEEE CS
  Biotin_lipoyl  23 vGdkVkagqvlaeve 37 
                    +Gd ++a     +++
     EGE26268.1 235 DGDLINASNAGTVIQ 249
                    555555555544444 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00062
                    EEEE.ECSESSSTTCEE-TTSEEEEE CS
  Biotin_lipoyl  11 sveegvvevlvkvGdkVkagqvlaev 36 
                    +++  +    vk+Gd+V  gq +a +
     EGE26268.1 271 YIH--IKDAQVKTGDTVRTGQRIASM 294
                    445..778899**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2594.27
//
Query:       EGE26269.1  [L=31]
Description: hypothetical protein EA1_05372 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 241.04
//
Query:       EGE26270.1  [L=120]
Description: hypothetical protein EA1_05377 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-25   87.1  13.4      1e-24   86.9  13.4    1.0  1  SirB      Invasion gene expression up-regulator, SirB
    0.00046   20.4   9.5     0.0014   18.8   9.5    1.7  1  DUF1516   Protein of unknown function (DUF1516)
  ------ inclusion threshold ------
       0.17   11.7  10.2      0.094   12.5   7.2    1.8  2  DUF2157   Predicted membrane protein (DUF2157)
        0.6   10.0   3.6       0.83    9.6   3.3    1.5  1  SLATT_1   SMODS and SLOG-associating 2TM effector domain 1
        2.2    7.6   7.6        2.6    7.3   7.6    1.0  1  TssN      Type VI secretion system, TssN
        3.9    7.7  10.3         15    5.8  10.3    2.0  1  UPF0093   Uncharacterised protein family (UPF0093)
        4.6    7.7  10.6        8.1    6.9  10.5    1.4  1  MerC      MerC mercury resistance protein


Domain annotation for each model (and alignments):
>> SirB  Invasion gene expression up-regulator, SirB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9  13.4     4e-28     1e-24       4     119 ..       1     117 [.       1     118 [. 0.96

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 4e-28
        SirB   4 lkhlHlllvllslllFilrgllllkgsallqkkllkilphivdtlLllsgiaLlvllglspftkaWltaKlvllvvyivlgvvalk.rakskklrllaf 101
                 +khlH+ll+++ l++Fil++l +++g++  ++++lkil+h+++t+++l+g++L++++ +   t++W +aKlvll+v  +++++a +  ++++++  +++
  EGE26270.1   1 MKHLHMLLAIIVLFIFILQALPMFMGKTPKASNTLKILNHVFYTAVILTGLGLFWQIYQVAGTQHWALAKLVLLIVAASATIKAQRhYTNTPSQAKAGL 99 
                 69******************************************************988888999********************64788999999*** PP

        SirB 102 vlAlvvflyivslAltks 119
                 ++A v+++ i++lA+tk+
  EGE26270.1 100 MIASVAYVGIIVLAITKP 117
                 ****************96 PP

>> DUF1516  Protein of unknown function (DUF1516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   9.5   5.4e-07    0.0014       2      88 ..       3      91 ..       2     115 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.4e-07
     DUF1516  2 hlhilsWvlliilfiv.alllyskgkskaakilhmilRlfyllilvtglvllirtfk..nspllyilKvllgllvIglmEmalarkkkkk 88
                hlh+l  ++++ +fi+ al + +    ka++ l++++ +fy  +++tgl l++++++  +++ +++ K +l + v +   +  +r   ++
  EGE26270.1  3 HLHMLLAIIVLFIFILqALPMFMGKTPKASNTLKILNHVFYTAVILTGLGLFWQIYQvaGTQHWALAKLVLLI-VAASATIKAQRHYTNT 91
                78888776655555541666666666789999***********************997645555555554422.2222223333332222 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   7.2   3.7e-05     0.094      67     138 ..       7      79 ..       1      87 [. 0.78
   2 ?    2.7   1.0     0.039     1e+02      72     112 ..      72     112 ..      65     115 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
     DUF2157  67 fllllvllllslllg.avlwrdrrvpprlgeallllaalllgaaialvgqifqlsgdaysllllwalllllma 138
                 +l ++vl+++ l +  ++++++++ +++l  +  ++++ +++++++l+ qi+q+ g+   +l+  +ll+++ +
  EGE26270.1   7 LLAIIVLFIFILQALpMFMGKTPKASNTLKILNHVFYTAVILTGLGLFWQIYQVAGTQHWALAKLVLLIVAAS 79 
                 3444555555555557888888899*******************************99998877777766554 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.039
     DUF2157  72 vllllslllgavlwrdrrvpprlgeallllaalllgaaial 112
                 vll++++ ++++++r+  + p  ++a l++a++++++ i+l
  EGE26270.1  72 VLLIVAASATIKAQRHYTNTPSQAKAGLMIASVAYVGIIVL 112
                 23333333334555555666666777777777777666665 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.3   0.00032      0.83      16      75 ..      30      89 ..      27     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00032
     SLATT_1 16 kaeeneraakrwrlllillellalllaalrafgelsvdlvgvlaavaaallaWlelkqye 75
                ka++  +  ++++++ ++l++l+l+  +++++g+++++l++++  ++aa ++  + + y+
  EGE26270.1 30 KASNTLKILNHVFYTAVILTGLGLFWQIYQVAGTQHWALAKLVLLIVAASATIKAQRHYT 89
                566666677889999**********************99999999999887766555554 PP

>> TssN  Type VI secretion system, TssN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.6     0.001       2.6       5     104 ..       9     108 ..       4     117 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.001
        TssN   5 lllpllavilllilsliakknkllkkkkliiyiLlaglvlalpgllgflknefvpygyillqilylllGilhlylllkkffkelkekkilfeilltliv 103
                  +++l+++il ++ +++ k+ k+ +  k++  ++ ++++l+ +gl+  + +      + l++++ l++     + + +++ ++ ++ k +  i  +  v
  EGE26270.1   9 AIIVLFIFILQALPMFMGKTPKASNTLKILNHVFYTAVILTGLGLFWQIYQVAGTQHWALAKLVLLIVAASATIKAQRHYTNTPSQAKAGLMIASVAYV 107
                 345566677778889999999999**********************99877777788888888888888888777999999999888833332222222 PP

        TssN 104 i 104
                 +
  EGE26270.1 108 G 108
                 2 PP

>> UPF0093  Uncharacterised protein family (UPF0093)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  10.3    0.0058        15      52     145 ..      33     117 ..       1     118 [. 0.64

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0058
     UPF0093  52 rLlkiimtpamiltlvlGllllalaeglvalssgWlhvKlllvllllayhlvlaklrkklaagentksekfyrilNEvptlllivivllvvvkp 145
                   lki+ +    +++++G l l+++   va +++W+ +Kl+l+++         ++ k+ ++ +nt s+    ++  ++ +  + i++l+++kp
  EGE26270.1  33 NTLKILNHVFYTAVILTG-LGLFWQIYQVAGTQHWALAKLVLLIVAAS------ATIKAQRHYTNTPSQAKAGLM--IASVAYVGIIVLAITKP 117
                 456666677777778888.7899999888999*******976654332......233333333344443333333..66677777777777775 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.5    0.0032       8.1      18     111 ..      14     115 ..       4     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0032
        MerC  18 lPvllallpllglsf.lasel..lhqvllilvvaigllalvvgyrrhrktsvlvlgalGllillvalflg.....teaeetllfgslwqvltvlGaalL 108
                 + ++l +lp++      as    + + +++ +v++++l+l++   +   t+ ++l+ l lli+++++ ++     t++ +++++g +++ + ++G+++L
  EGE26270.1  14 FIFILQALPMFMGKTpKASNTlkILNHVFYTAVILTGLGLFWQIYQVAGTQHWALAKLVLLIVAASATIKaqrhyTNTPSQAKAGLMIASVAYVGIIVL 112
                 4455566666666654444444555566777899999999999999999999999999999999999999776665455555899999*********** PP

        MerC 109 aia 111
                 ai+
  EGE26270.1 113 AIT 115
                 985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 952.24
//
Query:       EGE26271.1  [L=158]
Description: transcription elongation factor GreA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-32  111.3   0.9    2.6e-32  110.8   0.9    1.2  1  GreA_GreB_N  Transcription elongation factor, N-terminal
      8e-27   93.0   0.1    1.2e-26   92.5   0.1    1.2  1  GreA_GreB    Transcription elongation factor, GreA/GreB, C-te


Domain annotation for each model (and alignments):
>> GreA_GreB_N  Transcription elongation factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.9   2.9e-36   2.6e-32       2      71 .]       5      74 ..       4      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 2.9e-36
                 EE-HHHHHHHHHHHHHHHHXHHHHHHHHHHHHHHHSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHTEEE CS
  GreA_GreB_N  2 ylTkegyekleeeLeelktverpeiaeaikeareeGDlsENaeYdaAkeeqaeiearIreLedkLanaev 71
                 ++T+eg+++le+eL++lktverp+i++ai+eare+GDl+ENaeY+aA+e+q+++earIr++e+kL+ a++
   EGE26271.1  5 PMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEARIRDIEAKLSGAQI 74
                 8*******************************************************************98 PP

>> GreA_GreB  Transcription elongation factor, GreA/GreB, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.1   1.3e-30   1.2e-26       3      77 .]      83     157 ..      80     157 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.3e-30
                 .SS--TT-EEEEE-.SS--EEEE----TTT-BS-SSB--TTSHHHHHHTT--TT-EE---BTTB---EEEEEEX. CS
   GreA_GreB   3 kdvVtfGstVtledldtgeeetytiVgpdeadpskgkiSveSPlGkaLlgkkvGdevevkapsgkikveIlkiey 77 
                 +++V fG tV le++d+g +++y+iVg dead + gkiSv+SP+++ L+gk++Gde+++++psg  ++eIl++ y
  EGE26271.1  83 EGRVVFGVTVVLENMDDGAKRRYKIVGDDEADFKVGKISVNSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157
                 59**********************************************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1346.98
//
Query:       EGE26272.1  [L=1078]
Description: carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.4e-113  374.9   0.3    1.6e-74  249.9   0.0    2.2  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    2.2e-41  141.0   0.0      6e-41  139.6   0.0    1.8  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    1.7e-19   69.8   0.0    1.1e-18   67.2   0.0    2.5  2  MGS              MGS-like domain
    2.8e-13   49.8   0.0    5.8e-09   35.8   0.0    2.3  2  ATP-grasp        ATP-grasp domain
    9.8e-13   48.0   0.4    3.8e-08   33.2   0.2    2.9  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    2.8e-12   47.0   0.2      2e-07   31.2   0.0    2.4  2  ATP-grasp_3      ATP-grasp domain
    3.5e-10   39.8   0.1    2.2e-05   24.1   0.1    2.4  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    3.4e-06   26.7   0.0      0.009   15.6   0.0    4.1  3  ATP-grasp_4      ATP-grasp domain
     0.0023   18.4   0.0       0.95   10.0   0.0    3.0  2  CoA_binding_2    CoA binding domain
     0.0031   17.5   0.0        9.7    6.3   0.0    4.0  3  B12-binding      B12 binding domain
      0.008   16.1   0.1      0.014   15.3   0.1    1.3  1  ApeC             C-terminal domain of apextrin
  ------ inclusion threshold ------
      0.013   15.2   0.1       0.14   12.0   0.0    2.5  2  HTH_23           Homeodomain-like domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.9   0.0   1.1e-77   1.6e-74       1     210 [.     128     334 ..     128     335 .. 0.99
   2 !  123.1   0.1   7.4e-39   1.1e-35       1     210 [.     675     877 ..     675     878 .. 0.96

  Alignments for each domain:
  == domain 1  score: 249.9 bits;  conditional E-value: 1.1e-77
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+e +++a+kki+ ++ ++++a  +++++a ai +++g+P+ii+++f++GG+G+++a+n+ee++e+++++++ ++    ++q+l+++sl g+ke+E+e
   EGE26272.1 128 DRELFDKAMKKIGLECPKAEIA--QSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSP----THQLLIDESLIGWKEYEME 219
                  9********************9..**************************************************7....9****************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEE.EEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgag.tveflldpkskeyyviEvNtRlsvesalaekaTGl 193
                  v+rD+k+n+i+vc++en++++  +t+++i+vAP+qtLtd+e+q++r+a+++v+re+gv+++g +v+f ++pk+++++viE+N+R+s++sala+kaTG+
   EGE26272.1 220 VVRDKKDNCIIVCSIENFDPMgvHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVETGGsNVQFGINPKTGRMVVIEMNPRVSRSSALASKATGF 317
                  **********************************************************98887*********************************** PP

                  -HHHHHHHHHTT--GCG CS
  CPSase_L_D2 194 dlvkeaakialgekLee 210
                  +++k+aak+a+g++L+e
   EGE26272.1 318 PIAKIAAKLAVGYTLDE 334
                  ***************97 PP

  == domain 2  score: 123.1 bits;  conditional E-value: 7.4e-39
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+e++ ++++k+n +  + s++  ++ ee ++ a+++gyP ++++++ lGG+ m +++ne+el+  ++ a+++++    ++ vl++++l+   e++v+
   EGE26272.1 675 DRERFLQMINKLNLRQPNNSIV--KSSEEGIREAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASH----EAPVLLDHFLDDAIEVDVD 766
                  99*************9999988..**************************************************6....99***************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS-- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGld 194
                   ++D k+  ++ + ++ + q   + +++    P   L+d+  + +r+++v++++e+gvvg  +v+f+++   +  yv+EvN+R s+  +  +k  G+ 
   EGE26272.1 767 CVSDGKEV-VIGGIMQHIEQAgvHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKELGVVGLMNVQFAIK--GETVYVLEVNPRASRTVPFVSKCIGVS 861
                  ****9975.55677888888788*********************************************9..599************************ PP

                  HHHHHHHHHTT--GCG CS
  CPSase_L_D2 195 lvkeaakialgekLee 210
                  l+k+aa+  +g++L e
   EGE26272.1 862 LAKVAARCMAGQTLAE 877
                  *************986 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   0.0     4e-44     6e-41       2     122 .]     429     549 ..     428     549 .. 0.98

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 4e-44
  CPSase_L_D3   2 elkeptdeRifaiaealrrglsveeiheltkidpwFLekleelvelekelkkkkk.eldeellreakklGfsDkqiaelleeeeeeevrelrkklgil 98 
                  +lk+pt+eRif+ia+alr glsv+++++ t+idpwFL ++e++v++e++lk+    +l+++llr++k++G+sD++ia+l++  +e++ r++r ++gi 
   EGE26272.1 429 KLKTPTPERIFYIADALRFGLSVDDVFADTNIDPWFLVQIEDIVHTENQLKTLGMgDLTPNLLRRLKRKGLSDARIAKLMG-VSEKQFRKTRWNMGIY 525
                  699*************************************************9999***********************87.78889*********** PP

  CPSase_L_D3  99 pvykrvDtcAaeFeaetpYlYstY 122
                  pvykrvDtcAaeFe++t+Y+YstY
   EGE26272.1 526 PVYKRVDTCAAEFETSTAYMYSTY 549
                  ***********************9 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.5   5.3e+03       4      19 ..     650     665 ..     649     666 .. 0.86
   2 !   67.2   0.0     7e-22   1.1e-18       1      93 [.     963    1047 ..     963    1049 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.5
                 HHHHHHHHTTCEEEEE CS
         MGS   4 elakklkelgfellAT 19 
                 +la+ l+++g+ ++ T
  EGE26272.1 650 KLARSLEQAGVPIIGT 665
                 7899999999999998 PP

  == domain 2  score: 67.2 bits;  conditional E-value: 7e-22
                  THHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHHCHHHHHHHHHHHTTSHE CS
         MGS    1 glvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatvakdgykirraaenidIpl 93  
                  g+v++ak+l+  gf+++ATgGT+++l  ag++ ++ v+k++eg r++    i+d++kng+i+l int+++++a +  d++ irr a++++I +
  EGE26272.1  963 GVVDVAKRLAGFGFNIVATGGTHDMLVGAGVA-CKRVNKVSEG-RPH----IVDMMKNGQIHLAINTTEGKQALK--DSFPIRREALQNKILV 1047
                  589*****************************.99999*****.***....*********************997..9***********9965 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0    0.0001      0.15       2     160 ..     137     304 ..     136     312 .. 0.77
   2 !   35.8   0.0   3.9e-12   5.8e-09       2     160 ..     684     847 ..     683     850 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC.....GTTCEEEEE----SEEEEEEEEEETTC-EEE--E CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal.....keekvivEefvpfekElsvlvvrsaeGetafypv 95 
                 +k gl+ p+  +++s +++ ++ +++g+p++++ +     G G  +  ++e+  ++ e       +++ +i E+ + + kE  + vvr+++ +  ++  
  EGE26272.1 137 KKIGLECPKAEIAQSMDDAFAIQAKVGFPCIIR-PSFTMGGSGGGIAYNREEFIEICERGfdlspTHQLLIDESLIGW-KEYEMEVVRDKKDNCIIVCS 233
                 6889999*************************9.66666666666666666666665555577755555555666665.57788899*9999999999* PP

                 EEEEEETTEEE...EEEECEE-SCHHHHHHHHHHH.HHHHHHTS.SEEEEEEEEEE.TTCTEEEEEEESS- CS
   ATP-grasp  96 vetvqedgilr...lsvapaevsekaqkkaeeiak.kiveeLgg.vGvfavElFvl.edgellvnElapRp 160
                 +e+    g+     + vapa+  ++++ ++ + a+  +++e+g+  G   v + +  ++g+++v E+ pR+
  EGE26272.1 234 IENFDPMGVHTgdsITVAPAQTLTDKEYQIMRNASiAVLREIGVeTGGSNVQFGINpKTGRMVVIEMNPRV 304
                 ****9999985333789999999999999988888788888887467778887776567778888888887 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 3.9e-12
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE--EE CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafypvv 96 
                 +kl+l+ p+  +v+s+ee  + a+++g+p+vv+ +     G+   +v +e++l++ l+ +    +e +v++ +f +   E+ v  v + +  +++  ++
  EGE26272.1 684 NKLNLRQPNNSIVKSSEEGIREAAKVGYPLVVR-PSYVLGGRAMEIVYNEDELKRYLRDAvqasHEAPVLLDHFLDDAIEVDVDCVSDGKE-VVIGGIM 780
                 5789999999*******999999**********.99999*************998887777777999******************998775.7888888 PP

                 EEEEETTE....EEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCT.EEEEEEESS- CS
   ATP-grasp  97 etvqedgi....lrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledge.llvnElapRp 160
                 +++++ g+       s+ p+++s+++q   ++++  +++eLg+vG++ v + ++  ge ++v E+ pR 
  EGE26272.1 781 QHIEQAGVhsgdSACSIPPYSLSDDIQDDMRRQTVAMAKELGVVGLMNVQFAIK--GEtVYVLEVNPRA 847
                 88887665111167899********************************97777..555*********6 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00013      0.19      52     117 ..     267     336 ..     252     345 .. 0.75
   2 !   33.2   0.2   2.5e-11   3.8e-08       4     116 ..     750     878 ..     747     892 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
  ATPgrasp_Ter  52 laerlaeefgld.glvnvQvrededg..pkLLEiNpRasGGlg.ysalaGvnlpylalklllgleteeve 117
                   ++ ++ +e+g++ g  nvQ+  + ++  ++++E+NpR+s      s ++G  ++++a+kl+ g   +e +
    EGE26272.1 267 ASIAVLREIGVEtGGSNVQFGINPKTgrMVVIEMNPRVSRSSAlASKATGFPIAKIAAKLAVGYTLDELK 336
                   5567778888863578***98776555799********96555156777************997655554 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 2.5e-11
  ATPgrasp_Ter   4 allvmeyLegp.EySvDvlae.kgevlaavpRrKekgglq...........elekd..eelielaerlaeefgldglvnvQvrededgpkLLEiNpR 85 
                   ++l+ ++L+ + E+ vD++++ k  v+  +    e+ g++           +l++d  +++   + ++a+e+g+ gl+nvQ+  ++++ ++LE+NpR
    EGE26272.1 750 PVLLDHFLDDAiEVDVDCVSDgKEVVIGGIMQHIEQAGVHsgdsacsippySLSDDiqDDMRRQTVAMAKELGVVGLMNVQFAIKGETVYVLEVNPR 846
                   6777888876558889999885433333344443323332344455566765544322677788899****************************** PP

  ATPgrasp_Ter  86 asGGlgysala.Gvnlpylalklllgleteev 116
                   as ++     + Gv l+++a++ + g+  +e 
    EGE26272.1 847 ASRTVPFVSKCiGVSLAKVAARCMAGQTLAEQ 878
                   *****9876666************99633332 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.5e-05     0.052       2     158 ..     127     304 ..     126     307 .. 0.70
   2 !   31.2   0.0   1.3e-10     2e-07       3     158 ..     675     847 ..     673     850 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.5e-05
                  TSHHHHHHHHTTT.S---.........-EESS--.......SSSEEEEESS-------B--SS--TTE................EEEE---SEEEEEE CS
  ATP-grasp_3   2 sdKlktykkLkeagvkvP.....tkleaeeleee.......ekklvvKprdGaggesvrvveekeeaeaaieeve.........lvqefieGkplSvs 78 
                  +d   + k++k+ g+++P     +     +++ +         ++++ p+  +gg++  ++ ++ee  +++e            +    i  k++ ++
   EGE26272.1 127 EDRELFDKAMKKIGLECPkaeiaQ-----SMDDAfaiqakvGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFdlspthqllIDESLIGWKEYEME 219
                  5666778999999*****444321.....222225555666889*******************988776666555899999995555566669***** PP

                  EEE.SSSEEEEEEEEEEEET....TEEEEE...EES----HHHHHHHHHHHHHTTST....T--EEEEEEEEESS...SEEEEEEESS- CS
  ATP-grasp_3  79 llsdgekvlvlavnrqliekaekefvyaGn...vtpietelkeevvelaeevvekle....glaGyvGvDlvlkd..eepyviEvNPRl 158
                  ++ d++++ +++++ +  +      v +G    v+p++t  ++e + + +  ++ l+    +  G   v + ++   +  +viE NPR+
   EGE26272.1 220 VVRDKKDNCIIVCSIENFDPM---GVHTGDsitVAPAQTLTDKEYQIMRNASIAVLReigvE-TGGSNVQFGINPktGRMVVIEMNPRV 304
                  ***********9998888764...56666511156777766666665555556666522132.3333466666655689*********8 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1.3e-10
                  SHHHHHHHHTTT.S---...........-EESS--SSSEEEEESS-------B--SS--TTE...............EEEE---.SEEEEEEEEE.SS CS
  ATP-grasp_3   3 dKlktykkLkeagvkvP.......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefie.GkplSvsllsdge 84 
                  d  ++ + +++ +++ P       ++    e++++ ++lvv p++  gg ++ +v +++e+++ +            l+ +f++   ++ v+++sdg+
   EGE26272.1 675 DRERFLQMINKLNLRQPnnsivksSEEGIREAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVqasheapvLLDHFLDdAIEVDVDCVSDGK 772
                  555666777777777886655444444455666669*************************9998877789999**999****6378**********9 PP

                  SEEEEEEEEEEEET....TEEEEEEES----H..HHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS- CS
  ATP-grasp_3  85 kvlvlavnrqliekaekefvyaGnvtpietel..keevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRl 158
                  +v++  + + + + + ++   a ++ p+  ++  ++++++    + ++l g++G++ v + +k e  yv+EvNPR 
   EGE26272.1 773 EVVIGGIMQHIEQAGVHSGDSACSIPPYSLSDdiQDDMRRQTVAMAKEL-GVVGLMNVQFAIKGETVYVLEVNPRA 847
                  998888877666665666666667778887777899999999999****.*************************6 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.6e-05     0.053      27     174 ..     154     302 ..     141     309 .. 0.78
   2 !   24.1   0.1   1.5e-08   2.2e-05      30     174 ..     704     845 ..     683     851 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
                      HHHHHHHHC-SSEEEEES.SSSTTTTEEEESSGGGHHHHHHHHHTT..-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHH CS
  Dala_Dala_lig_C  27 llekveeelgypvfVKpa.reGSSvGvskveseeelkeaieeafky..dekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeak 116
                         ++++++g+p++++p+  +G S G   + ++ee+ e  e+ f    +++ l++e +   +e e+ v+ + k ++  v  i    + +d    
       EGE26272.1 154 DAFAIQAKVGFPCIIRPSfTMGGS-GGGIAYNREEFIEICERGFDLspTHQLLIDESLiGWKEYEMEVVRDKKDNCIIVCSI----ENFDPMGV 242
                      445799***********9434444.334579***********9976337899998877699*********888777655554....55777777 PP

                      HC.TT-EEESS----HHHHHHHHHHHHHHHHHTT-.-SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 117 ysddkaqlevpaklekeveekiqelalkaykaldl.rGlaRvDffl.teegeivlnEvNt 174
                      +++d++++    +l++++++ ++++++ + + +++ +G + v f +  ++g++v+ E+N+
       EGE26272.1 243 HTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVeTGGSNVQFGInPKTGRMVVIEMNP 302
                      778888888888889999999999999999999973588999998877899999999996 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.5e-08
                      HHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHT..T-SCEEEEE--.ESEEEEEEEEETSS.CEEEEEEEEE-SSSSS-HHHHHC. CS
  Dala_Dala_lig_C  30 kveeelgypvfVKpareGSSvGvskveseeelkeaieeafk..ydekvlvEeai.egreievavlgnek.levsevgeivvkkgfydyeakysd 119
                      ++ +++gyp++V+p+       ++ v +e+elk+++++a++  +++ vl ++++ ++ e++v  + ++k + +  + +++ + g+       s+
       EGE26272.1 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQasHEAPVLLDHFLdDAIEVDVDCVSDGKeVVIGGIMQHIEQAGVH------SG 791
                      56789**********9888889*****************98335667*******99******998877735666777888777775......57 PP

                      TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 120 dkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                      d+a    p +l++++++ ++   + + k l++ Gl  v f ++  +++++ EvN+
       EGE26272.1 792 DSACSIPPYSLSDDIQDDMRRQTVAMAKELGVVGLMNVQFAIK-GETVYVLEVNP 845
                      88889999********************************998.78999*****7 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     6e-06     0.009       2     151 ..     163     303 ..     162     309 .. 0.82
   2 ?    0.4   0.0      0.28   4.2e+02     121     153 ..     574     607 ..     570     629 .. 0.67
   3 ?    4.6   0.0     0.014        21       2     151 ..     710     846 ..     709     851 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6e-06
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflv.EeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrl 98 
                   +P++i+Ps  ++  G  ++ n+ee+ + +++            +      ++ l+ E++i  +E+ +++  d++ + +i+  ++    +  ++ d +
   EGE26272.1 163 GFPCIIRPSFTMGGSGGGIAYNREEFIEICERGF----------D--LSPTHQLLIdESLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSI 248
                  6899999999999999999999999999444332..........2..12234556626677779***********999988888888889999***** PP

  ATP-grasp_4  99 yvtsakvieetleal.eellkevnallglknfpvHiElrvs.edgkiipiEvnpl 151
                   v +a+ ++++++++  ++  +v +++g++ + + + + ++ ++g++++iE+np+
   EGE26272.1 249 TVAPAQTLTDKEYQImRNASIAVLREIGVETGGSNVQFGINpKTGRMVVIEMNPR 303
                  ****998888887774788899*****************994567*********6 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.28
  ATP-grasp_4 121 nallglknfpvHiElrvsedg.kiipiEvnplrf 153
                  ++ +++ +  vH+ l ++edg + i++  np  +
   EGE26272.1 574 GQGIEFDYCCVHAALAMREDGyETIMVNCNPETV 607
                  5566666677777777777776666777776544 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.014
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieG.eEfavdayfdeeGepvilnilkkefaseedvsd.r 97 
                   +P+v++Ps   + + + ++ ne+e+k+ +   ++ + qa++        e+ +l+ ++++   E+ vd   d + e vi  i+++  +   +  d  
   EGE26272.1 710 GYPLVVRPSYVLGGRAMEIVYNEDELKRYL---RDAV-QASH--------EAPVLLDHFLDDaIEVDVDCVSDGK-EVVIGGIMQHIEQAGVHSGDsA 794
                  689999999999999999999999998844...4332.2222........2334555555421366666666444.4556678888665554444414 PP

  ATP-grasp_4  98 lyvtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnpl 151
                  + + + +++ + ++++ + + +++++lg+  + + + + ++ + +++++Evnp+
   EGE26272.1 795 CSIPPYSLSDDIQDDMRRQTVAMAKELGVV-GLMNVQFAIKGE-TVYVLEVNPR 846
                  566667777777888877777777777775.567788888876.6888899986 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00063      0.95       5      76 ..      19      91 ..      17     149 .. 0.65
   2 ?    5.0   0.0     0.022        34      62     107 ..     618     664 ..     585     670 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00063
                   EET--S-TTSHHHHHHHHHHHHT--EEEESSS-SEETTEES----T.....T--EEEE-S-HHHHGGGHHHHH CS
  CoA_binding_2  5 VvGasdnpgkfgykvlryllehglpvvpVnpkeeeilgekvyaslae.dpepvdlvdvftppeatpeivkeal 76
                   V+G   + +  g ++ + l+e+g++v+ Vn +  +i   ++ a+ +  +p + ++v  ++  e+  +i+  ++
     EGE26272.1 19 VIGQACEFDYSGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYiEPITWQTVEQIIAKERPDAILPTMG 91
                   5565556666789999**********************99888888644666677777777777777766664 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.022
                    -S-HHHHGGGHHHHHHH--SEEEE-TT.---HHHHHHHHHTT-EEE. CS
  CoA_binding_2  62 ftppeatpeivkealalgakavwlqpg.sedeeaaelaeeagirvvg 107
                    +  p +++++++ + ++++k+v++q g     ++a+ +e+ag++++g
     EGE26272.1 618 YFEPITLEDVLEIVRTEQPKGVIVQYGgQTPLKLARSLEQAGVPIIG 664
                    566777888888889999********94455699999999***9997 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0065       9.7      22      70 ..      35     101 ..      26     110 .. 0.86
   2 ?   -0.2   0.0      0.66   9.8e+02      17      44 ..     438     472 ..     430     479 .. 0.74
   3 ?    5.4   0.0     0.012        17      21      57 ..     587     641 ..     576     663 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0065
  B12-binding  22 aalrdagfeVqllganven..................edivaairaekpdvvglSalltsqleavke 70 
                   al+++g++V+l++ n  +                  +++++ i++e+pd+++ +   ++ l+++ +
   EGE26272.1  35 KALKEEGYRVILVNSNPATimtdpsmadatyiepitwQTVEQIIAKERPDAILPTMGGQTALNCALD 101
                  578999*******999988999999999********999999**********988777777776655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.66
  B12-binding  17 lavlaaalrdagfeVqll..ganven......ediv 44 
                  + ++a+alr  g +V+++  + n+++      ediv
   EGE26272.1 438 IFYIADALRF-GLSVDDVfaDTNIDPwflvqiEDIV 472
                  689*******.9***988334444447775555555 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.012
  B12-binding  21 aaalrdagfeVqllganven..................edivaairaekpdvvgl 57 
                  a a+r++g+e +++++n e+                  ed+++ +r e+p  v +
   EGE26272.1 587 ALAMREDGYETIMVNCNPETvstdydtsdrlyfepitlEDVLEIVRTEQPKGVIV 641
                  5678999***********99******************************99977 PP

>> ApeC  C-terminal domain of apextrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   9.5e-06     0.014      68     132 ..     513     585 ..     500     592 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.5e-06
        ApeC  68 edesstewpkGkYCiykvgesCPkgfesgsitw....ddedsknenrtsgalPd....gkydkntliefCCre 132
                 ++ ++t+w+ G Y +yk  ++C ++fe+++ ++    d+e + n++++  ++      ++  +  ++++CC +
  EGE26272.1 513 KQFRKTRWNMGIYPVYKRVDTCAAEFETSTAYMystyDEECEANPSNKDKIMVIgggpNRIGQGIEFDYCCVH 585
                 334489***********************6555444366655444443333322222344566788899**76 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.7     1e+03      14      29 ..     313     328 ..     306     331 .. 0.74
   2 ?   12.0   0.0     9e-05      0.14      12      37 ..     492     518 ..     489     527 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.7
      HTH_23  14 lae.GlsvreIAreLgv 29 
                     G ++++IA++L v
  EGE26272.1 313 K-AtGFPIAKIAAKLAV 328
                 3.25*********9977 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 9e-05
      HTH_23  12 lllae.GlsvreIAreLgvsrrTvyrw 37 
                 + l++ Gls ++IA+++gvs+ + ++ 
  EGE26272.1 492 RRLKRkGLSDARIAKLMGVSEKQFRKT 518
                 555556***************999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 7409.38
//
Query:       EGE26273.1  [L=167]
Description: hypothetical protein EA1_05392 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-29  102.0   1.7    1.7e-29  102.0   1.7    2.4  3  ICMT      Isoprenylcysteine carboxyl methyltransferase (ICMT)
    1.7e-07   31.6   2.4    1.7e-07   31.6   2.4    2.1  2  PEMT      Phospholipid methyltransferase
     0.0013   18.3   3.6     0.0018   17.9   3.6    1.3  1  DUF1295   Protein of unknown function (DUF1295)
  ------ inclusion threshold ------
       0.31   11.4   8.7       0.77   10.1   3.1    2.3  2  DUF2919   Protein of unknown function (DUF2919)


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3      0.15   6.8e+02      70      92 ..       6      28 ..       2      30 .. 0.72
   2 ?   -2.0   0.1       1.1   4.8e+03      66      82 ..      40      56 ..      34      61 .. 0.70
   3 !  102.0   1.7   3.9e-33   1.7e-29       8      93 ..      79     164 ..      70     165 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.15
        ICMT 70 alvllalvalllfvRikeEekaL 92
                 ++++++ +l+l v ik+E + +
  EGE26273.1  6 LILFFIIRLLFLAVSIKHEKALI 28
                46777777777779999997765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
        ICMT 66 akltalvllalvalllf 82
                 +++a+v ++++++ ++
  EGE26273.1 40 STVLAVVHTLYYLACFI 56
                56677777777776664 PP

  == domain 3  score: 102.0 bits;  conditional E-value: 3.9e-33
        ICMT   8 aqalrlvvmatlGeiwttrvailpdhklvksglykylrHPnYllfvilelatllLlcnakltalvllalvalllfvRikeEekaLa 93 
                 + +++   +++lGeiwt++++ilp+h++++s+l+k++rHPnY+l++i+el++++Llc+a+++ l+ l++++l+lf+Ri++Ee+a+a
  EGE26273.1  79 SFVILALIIKQLGEIWTVKIYILPEHQINRSWLFKTFRHPNYFLNIIPELIGIALLCQAWYVLLIGLPIYLLVLFKRIRQEEQAMA 164
                 456778899***************************************************************************97 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.39   1.8e+03      68      89 ..      33      54 ..      26      59 .. 0.68
   2 !   31.6   2.4   3.7e-11   1.7e-07       4     102 ..      70     167 .]      68     167 .] 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.39
        PEMT 68 Litgsaaglllallvllvylia 89
                + +g+  +++la++ +l yl+ 
  EGE26273.1 33 IQYGKTNSTVLAVVHTLYYLAC 54
                5567777777777776666654 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 3.7e-11
        PEMT   4 ilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstl.gflGlaLitgsaaglllallvllvylialkfvEephlaki 101
                 ++G+l++ + +++   +i++lge  t+  ++++  ++++ +s +++ +++P y++ ++  ++G+aL+ + + +ll+ l ++l++l+ +++ Ee+ +a +
  EGE26273.1  70 LVGTLMVGASFVILALIIKQLGEIWTV--KIYILPEHQINRSWLFKTFRHPNYFLNIIpELIGIALLCQAWYVLLIGLPIYLLVLFKRIRQEEQAMATL 166
                 57*********************9887..455667889*****************9984699**********************************987 PP

        PEMT 102 Y 102
                 +
  EGE26273.1 167 F 167
                 6 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   3.6   3.9e-07    0.0018      78     218 ..      35     163 ..       4     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.9e-07
     DUF1295  78 lgktiallsllvvfvlQavllylvalpvllaaaskeeqalkaldviglalwlvgivlealaDqQlsafkkdpankgkvldsGLwrysRHPNYfgealiW 176
                 +gkt +++ l+vv++l +++ ++   +v l+ ++ +  +l  + ++g+  +++++++  l+     +    p+   ++++s L++  RHPNYf +++  
  EGE26273.1  35 YGKT-NSTVLAVVHTLYYLACFI---SVWLSDTAFNGISLVGTLMVGASFVILALIIKQLGEIWTVKIYILPE--HQINRSWLFKTFRHPNYFLNIIPE 127
                 5555.455666777776665553...45556666678899999999999999999999999987777666776..789****************99863 PP

     DUF1295 177 wglflialealeglealaiagpllltlllvfvsgipllEkka 218
                     li++  l ++ +++++g  l  +llv +  i+  E+ +
  EGE26273.1 128 ----LIGIALLCQAWYVLLIG--LPIYLLVLFKRIRQEEQAM 163
                 ....44444444444566777..4444555555588888776 PP

>> DUF2919  Protein of unknown function (DUF2919)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.1   0.00017      0.77      60     134 ..       6      83 ..       1      94 [. 0.80
   2 ?    4.6   0.2    0.0083        37      57      84 ..     138     164 ..     133     167 .] 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00017
     DUF2919  60 Lalgvpalllllligrrkkssewleklwragr...plllllllvdlllqlyrlalsheafswltaltlllllwvllyl 134
                 L+l +++ ll+l+++ +++++ +++  +++g+   ++l ++  ++ l  +++++ls+ af+ + ++ +l++ ++++ l
  EGE26273.1   6 LILFFIIRLLFLAVSIKHEKALIAKGAIQYGKtnsTVLAVVHTLYYLACFISVWLSDTAFNGISLVGTLMVGASFVIL 83 
                 55556677788*********************7666666666778888899***********9999888877766655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0083
     DUF2919  57 ylgLalgvpalllllligrrkkssewle 84 
                 +  L++g+p+ ll+l+ + r++ ++ ++
  EGE26273.1 138 WYVLLIGLPIYLLVLFKRIRQE-EQAMA 164
                 6789************999976.55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1243.83
//
Query:       EGE26274.1  [L=74]
Description: hypothetical protein EA1_05397 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0081   17.0   0.1      0.026   15.4   0.0    1.7  2  Fic          Fic/DOC family
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.17   11.6   0.0    1.3  1  UPF0730      UPF0730 unknown protein family
       0.13   12.0   0.1       0.19   11.5   0.1    1.3  1  CSTF1_dimer  Cleavage stimulation factor subunit 1, dimerisat


Domain annotation for each model (and alignments):
>> Fic  Fic/DOC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.3e-06     0.026      73      96 ..       2      25 ..       1      26 [. 0.85
   2 ?   -0.6   0.0      0.42   2.5e+03       3      17 ..      37      51 ..      35      67 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.3e-06
                HHHHHH--SSS-HHHHHHHHHHHH CS
         Fic 73 yefekiHPFaDGNgRtarlllnll 96
                y++++   F DGN+R+a++++n+ 
  EGE26274.1  2 YYMMRHQLFWDGNKRIAMICANYE 25
                67778889*************985 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.42
                SHHHHHHHHCHS-S- CS
         Fic  3 tledllelhrlllqd 17
                ++++l  +h ll + 
  EGE26274.1 37 NENQLETWHTLLSAF 51
                667777777766333 PP

>> UPF0730  UPF0730 unknown protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.9e-05      0.17       8      29 ..      51      72 ..      48      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.9e-05
     UPF0730  8 yYeELhsYHiVPYesenalYGv 29
                +Ye      iV ++ en+lYG+
  EGE26274.1 51 FYESNDDNKIVAWTYENCLYGM 72
                677778889************9 PP

>> CSTF1_dimer  Cleavage stimulation factor subunit 1, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.1e-05      0.19       9      27 ..       1      19 [.       1      28 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.1e-05
  CSTF1_dimer  9 LYRLiIsQLfyDGyqsiAv 27
                 +Y ++  QLf DG + iA+
   EGE26274.1  1 MYYMMRHQLFWDGNKRIAM 19
                 89999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 590.76
//
Query:       EGE26275.1  [L=99]
Description: hypothetical protein EA1_05402 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 832.15
//
Query:       EGE26276.1  [L=313]
Description: mrr restriction system protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-30  104.4   0.0    7.1e-30  103.4   0.0    1.5  1  Mrr_cat          Restriction endonuclease
    7.5e-14   51.7   0.3    1.8e-12   47.3   0.0    2.2  2  Mrr_cat_2        Restriction endonuclease
    3.1e-11   43.2   0.4    6.9e-11   42.1   0.0    1.7  2  Mrr_N            Mrr N-terminal domain
  ------ inclusion threshold ------
      0.033   14.6   0.1      0.066   13.6   0.1    1.4  1  DUF5121          Domain of unknown function (DUF5121)
       0.12   12.9   0.1       0.28   11.7   0.1    1.7  1  Dala_Dala_lig_N  D-ala D-ala ligase N-terminus


Domain annotation for each model (and alignments):
>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0     2e-33   7.1e-30       2     115 .]     170     290 ..     169     290 .. 0.94

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 2e-33
                 TTT-TTCHHHHHHHHHHHHSSS....EEE---B-TTSSB--EEEETTEEEEEEEEEEE--..TS-B-HHHHHHHHHHCTTS..SEEEEEESS-B-HHHH CS
     Mrr_cat   2 dkmspkeFeklvaellealGyk....eveltgrsgDggiDliakkdplgserilvqaKry..knkvgvkeVqeligalkkrgadkgifvttsdftkaAr 94 
                 +k +p  Fek v +ll a Gy+     +e+tg+s DggiD+++k+dplg ++i++qaKry  +n +g+ke+q++ gal+++g+++g+f+tts+ftk+A+
  EGE26276.1 170 QKGTPLFFEKSVLKLLLAVGYGgkenLFEHTGKSHDGGIDGVIKQDPLGIQNIYIQAKRYasDNMIGSKELQSFSGALQGNGVERGVFITTSSFTKSAQ 268
                 6778999***************9997779*******************************75599********************************** PP

                 HHHHT.T--EEEE-HHHHHHHH CS
     Mrr_cat  95 eeaee.lnkieLldgdeLaell 115
                  + ++ l +i+L+ g+eL+ l+
  EGE26276.1 269 GFSQKlLGRIVLIGGQELVGLM 290
                 *****5679*********9876 PP

>> Mrr_cat_2  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.4     0.052   1.9e+02      50     111 ..     104     170 ..      93     173 .. 0.73
   2 !   47.3   0.0     5e-16   1.8e-12      23     121 ..     199     297 ..     192     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.052
   Mrr_cat_2  50 KfYaedekiqked.idsFlsasgkkkftkrliisTtdk....wsknaeealknqkipvkridledLe 111
                 K+Y+e    ++++ ++s  +++ kkk +++  i+T d+    +  +a++a+kn +++++   l++L+
  EGE26276.1 104 KLYDEADLPDWKSyLKSRAEIKRKKKLSDKTSIETDDNddmdFETQAKNAIKNLETEISVELLNKLQ 170
                 6666544444433366777788888999999999988666669999999999999888877777765 PP

  == domain 2  score: 47.3 bits;  conditional E-value: 5e-16
   Mrr_cat_2  23 krlgkkDtGIDlVake..rkegeywAIQcKfYaedekiqkedidsFlsasgkkkftkrliisTtdkwsknaeealknqkipvkridledLeeseidwsk 119
                 ++ +++D GID V+k+   + ++++ IQ+K+Ya+d+ i +++++sF +a + + + ++++i Tt++++k a+   ++    + +i+ ++L  ++i+++ 
  EGE26276.1 199 HTGKSHDGGIDGVIKQdpLGIQNIY-IQAKRYASDNMIGSKELQSFSGALQGNGVERGVFI-TTSSFTKSAQGFSQKLLGRIVLIGGQELVGLMIKYKV 295
                 66789***********655555666.******************************99999.7778********999999***************9987 PP

   Mrr_cat_2 120 ls 121
                   
  EGE26276.1 296 GI 297
                 65 PP

>> Mrr_N  Mrr N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   1.9e-14   6.9e-11       8      84 ..      16      91 ..      10      93 .. 0.94
   2 ?   -2.6   0.1       1.8   6.5e+03      25      55 ..     122     151 ..     117     163 .. 0.59

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.9e-14
       Mrr_N  8 lLealadgsehrlkeirervaerfglseeeraellpsgkqtrfknrvgWartyLkkagllespkrgvwkiTekGrev 84
                +L+ ++d ++++++ei++ v++  ++s+e +    +sg q++++n ++W ++  +kag+l++ ++++++iT+ G ++
  EGE26276.1 16 TLKLMSDNKVRKRQEIYQGVIQLGEFSDEILTLRFNSG-QPKVENAIAWSISSRTKAGILNRISKATYQITPIGLKM 91
                79************************************.77*******************************99875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
       Mrr_N  25 ervaerfglseeeraellpsgkqtrfknrvg 55 
                 ++++++ +ls++   e+  +  +  f+ ++ 
  EGE26276.1 122 AEIKRKKKLSDKTSIETDDNDDM-DFETQAK 151
                 45666666676666666655544.4444444 PP

>> DUF5121  Domain of unknown function (DUF5121)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.8e-05     0.066      12      94 ..      51     143 ..      44     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
     DUF5121  12 gigkPsvasevgwnt...dkalclaevadkkyqltlta....GeriradeisfKffgqk...gwggefkgkgevklasttsdllkitdsgNle 94 
                 + g+P+v++ ++w++    ka  l ++++  yq+t           ++++is K + ++   +w++ +k+++e+k  ++ sd  +i  ++N  
  EGE26276.1  51 NSGQPKVENAIAWSIssrTKAGILNRISKATYQITPIGlkmaTLWQNKTHISEKLYDEAdlpDWKSYLKSRAEIKRKKKLSDKTSIETDDNDD 143
                 5699*********9966567889***********9765443344447789******99866679***********999999999998777744 PP

>> Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   7.8e-05      0.28      14      59 ..      64     127 ..      59     176 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.8e-05
                      HHHHHHHHHHHHHCHCCTEEEEEEEE-TTS-EHHHHHHHHTTHHH..................T CS
  Dala_Dala_lig_N  14 evSlvsaksvlkaldkekyeviligitkegkwkkkaekleskekk..................k 59 
                      ++S  + + +l++++k +y++++ig++    w++k++++e+  ++                  k
       EGE26276.1  64 SISSRTKAGILNRISKATYQITPIGLKMATLWQNKTHISEKLYDEadlpdwksylksraeikrK 127
                      6999999********99***********999955555544433334455555555544433330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2549.94
//
Query:       EGE26277.1  [L=410]
Description: carbamoyl phosphate synthase small subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-49  165.1   0.1    9.5e-49  164.5   0.1    1.3  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    1.6e-45  155.2   0.1    3.7e-45  154.0   0.0    1.5  2  GATase           Glutamine amidotransferase class-I
    7.1e-06   25.9   0.1    0.00024   20.9   0.1    2.4  1  Peptidase_C26    Peptidase C26
  ------ inclusion threshold ------
      0.037   13.4   0.8      0.061   12.6   0.2    1.7  2  MtrE             Tetrahydromethanopterin S-methyltransferase,


Domain annotation for each model (and alignments):
>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.1   2.1e-52   9.5e-49       1     128 []       8     139 ..       8     139 .. 0.97

  Alignments for each domain:
  == domain 1  score: 164.5 bits;  conditional E-value: 2.1e-52
  CPSase_sm_chain   1 kavLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGvneedves...ekikvaglvvrelseepsnwra 90 
                      ka+L+L+dGt+f+G s+g  +++vGEvvfnT+mtGYqeiltDpsYa+q+++ltyp+iGn+G+n+ed es   ++i+++gl++r+++  +s++r+
       EGE26277.1   8 KAILALADGTIFHGISIGaMGSSVGEVVFNTAMTGYQEILTDPSYAKQLVTLTYPHIGNTGTNSEDGESgseHRIWASGLIIRDATIISSSFRN 101
                      589***************669*********************************************99998899******************** PP

  CPSase_sm_chain  91 eesLsewlkeekipgisgvDTRaLtkklrekgamkgvi 128
                      +esL+++l++++ ++i+++DTR+Lt+ lr+kga++g+i
       EGE26277.1 102 DESLTDFLQRHDTVAIAEIDTRKLTRILRDKGAQHGCI 139
                      ***********************************997 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.1     5e+03     112     141 ..      87     124 ..      51     139 .. 0.61
   2 !  154.0   0.0   8.3e-49   3.7e-45       3     188 ..     227     402 ..     225     403 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
                 T.........CGGTTTTSEEEEEEEEEEEEESGCHHHTT CS
      GATase 112 t.........allyglknevierhrHryevnpkelepag 141
                           + ++++++  +  +rH  ++   e+  ++
  EGE26277.1  87 LiirdatiisSSFRNDESLTDFLQRHDTVAIA-EIDTRK 124
                 24444466666777777777777777777776.555444 PP

  == domain 2  score: 154.0 bits;  conditional E-value: 8.3e-49
                 EESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCT.STS-EEEETHHHHHHHHHTTTEEEEEECEE CS
      GATase   3 iDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikeare.nkiPiLGICLGmQllaiefgrkvvkekeke 99 
                  D++   + n+++ lv +g+ v+vvp +++++e   l+knpdgi++s+Gp +p+ ++ +i++ik+++e  +iP +GICLG+Qll++++g+k++k+k  +
  EGE26277.1 227 YDFG--TKTNILRMLVDRGCHVTVVPAQTPISEV--LAKNPDGIFLSNGPADPAaCTYAIDNIKHIIEqTEIPTFGICLGHQLLGLASGAKTIKMK-SG 320
                 5777..99**************************..58******************************899*************************.9* PP

                 EEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHH CS
      GATase 100 hhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfli 188
                 hhg+++++++        ++ ++i++++H++++++ +++pa+++ t++s  d+++ +i   ++p++g+Q HPE++++p++ ++lf+ +i
  EGE26277.1 321 HHGANHPVQN------LADGTVMITSQNHGFAIDE-ATLPANVKATHRSLFDGTNQGIELTDKPAFGFQGHPEASPGPHDCSVLFDRFI 402
                 **********......55557*************9.**************************************************997 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   5.3e-08   0.00024      84     216 .]     271     386 ..     256     386 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5.3e-08
  Peptidase_C26  84 eeadpeRdalelaLiraaler.gvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqai 178
                    ++adp+  ++ +  i++++e+ ++P +giC+G+qll  a G ++ +  +       h       a+h v+   ++ +          +   H +ai
     EGE26277.1 271 GPADPAACTYAIDNIKHIIEQtEIPTFGICLGHQLLGLASGAKTIKMKSG------H-----HGANHPVQNLADGTVMI--------TSQNHGFAI 347
                    56666666777777888887537**************9999776543332......2.....23456665443333222........223588888 PP

  Peptidase_C26 179 kelaeelrveAvae...DgviEaieseeakafvlgvQwHPE 216
                    +e     +v A+ +   Dg+   ie+++  ++++g Q HPE
     EGE26277.1 348 DEATLPANVKATHRslfDGTNQGIELTD--KPAFGFQGHPE 386
                    8866666666655555788888888887..35788888887 PP

>> MtrE  Tetrahydromethanopterin S-methyltransferase, subunit E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.4e-05     0.061     155     182 ..      11      38 ..       1      48 [. 0.71
   2 ?   -3.1   0.0      0.84   3.8e+03     143     193 ..     285     335 ..     278     350 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
        MtrE 155 fplpllaliwGitvGaiGsstGdvhyGa 182
                 ++l+  ++++Gi +Ga+Gss+G+v + +
  EGE26277.1  11 LALADGTIFHGISIGAMGSSVGEVVFNT 38 
                 4555567999*************87643 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.84
        MtrE 143 lsylmtlvlkhpfplpllaliwGitvGaiGsstGdvhyGaereyqkkefGa 193
                 + +++ ++   +f + l   ++G++ Ga    +   h+Ga++  q+ + G+
  EGE26277.1 285 IKHIIEQTEIPTFGICLGHQLLGLASGAKTIKMKSGHHGANHPVQNLADGT 335
                 555555555556777777778888888888888888888888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3266.99
//
Query:       EGE26278.1  [L=137]
Description: methionine-R-sulfoxide reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-48  162.0   0.1    6.5e-48  161.8   0.1    1.0  1  SelR            SelR domain
    0.00013   22.2   0.1    0.00027   21.1   0.1    1.5  1  Yippee-Mis18    Yippee zinc-binding/DNA-binding /Mis18, centr
  ------ inclusion threshold ------
       0.02   15.0   2.1       0.11   12.7   0.1    2.2  2  NOB1_Zn_bind    Nin one binding (NOB1) Zn-ribbon like
      0.027   14.4   1.4        3.6    7.6   0.0    2.3  2  Zn_ribbon_SprT  SprT-like zinc ribbon domain
      0.067   13.2   1.2        1.5    8.9   0.0    2.3  2  DZR             Double zinc ribbon


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   0.1   1.8e-51   6.5e-48       1     118 [.      16     133 ..      16     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 1.8e-51
                 HHHCTSHCCHHHHHHHTT-SSTTSSSTSS--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEEC CS
        SelR   1 elkkkLtpeqyevlrekgterpftgeyekekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvFe 99 
                 +++++L++ +y+vlr+kgte++ftg y++++ +Gvy+c++c++pLf+s++kf+sgcGwpsF ++i ++ v e+ d s+gm+r+ev+c++c++hlGhvF 
  EGE26278.1  16 DWQNRLDDLSYYVLRQKGTEQAFTGLYTDTEVDGVYRCKGCHTPLFDSSAKFHSGCGWPSFDKVIGDNVVDETLDLSHGMRRIEVTCHHCGGHLGHVFP 114
                 69************************************************************************************************* PP

                 TSSSSS.SEEEEE-CCCEE CS
        SelR 100 dgpkpttgkrycinsvslk 118
                 d++ + tg+rycins+++ 
  EGE26278.1 115 DNHVTDTGLRYCINSAAVV 133
                 ****************986 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   7.4e-08   0.00027       2      89 ..      50     131 ..      49     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 7.4e-08
                   EEEETTTS-EEEECCCEEEEECCCEEEES---CCCEEEECEEEETTSTTEEEEEEEETTT--EEEEEEEECSCCCCCCCTCEEEEGGG CS
  Yippee-Mis18   2 vfqCkkCktilgdslqlvsegralnivvlkkvtrnvvvgkelvtdeegkctystlsCkgCnsvlGwkYksteeelkykrglfiletka 89 
                   v++Ck C+t+l ds++ + +g       ++kv  + vv+++l  +  +     +++C++C+ +lG ++ + +   + +r  ++++++a
    EGE26278.1  50 VYRCKGCHTPLFDSSAKFHSGCG--WPSFDKVIGDNVVDETLDLS--HGMRRIEVTCHHCGGHLGHVFPDNHVTDTGLR--YCINSAA 131
                   789***************98877..44455555444556666666..3356679**************98887777776..7777665 PP

>> NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     3e-05      0.11       8      37 ..      50      79 ..      48      92 .. 0.92
   2 ?    1.9   0.2     0.071   2.5e+02      35      64 ..      96     125 ..      92     132 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3e-05
  NOB1_Zn_bind  8 vlrChaCfkvtkdmtkkFCpkCGnktLkrv 37
                  v+rC +C++   d++ kF + CG ++ ++v
    EGE26278.1 50 VYRCKGCHTPLFDSSAKFHSGCGWPSFDKV 79
                  78*********************9999998 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.071
  NOB1_Zn_bind  35 krvavsvdengelklhlkknfqlnlrGtky 64 
                   +r++v+ ++ g    h+  +++++  G +y
    EGE26278.1  96 RRIEVTCHHCGGHLGHVFPDNHVTDTGLRY 125
                   555555555544444444444455555555 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.001       3.6      24      34 ..      45      60 ..      16      61 .. 0.75
   2 ?    5.7   0.4    0.0039        14      27      36 ..     102     111 ..      95     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.001
  Zn_ribbon_SprT 24 n.....YrCrrCkgtL 34
                    +     YrC+ C+  L
      EGE26278.1 45 TevdgvYRCKGCHTPL 60
                    1556669*****9765 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0039
  Zn_ribbon_SprT  27 CrrCkgtLrg 36 
                     C++C+g+L+ 
      EGE26278.1 102 CHHCGGHLGH 111
                     *******985 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00043       1.5      28      49 .]      50      72 ..      19      73 .. 0.82
   2 ?    2.9   0.4     0.032   1.1e+02      14      22 ..     101     109 ..      92     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00043
         DZR 28 edrCpsCgek.vdpearfCpeCG 49
                 +rC  C+++  d+ a+f   CG
  EGE26278.1 50 VYRCKGCHTPlFDSSAKFHSGCG 72
                799*******9999999988888 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.032
         DZR  14 fCseCgtkl 22 
                 +C++Cg +l
  EGE26278.1 101 TCHHCGGHL 109
                 566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1065.11
//
Query:       EGE26279.1  [L=413]
Description: bifunctional HTH-domain containing protein/aminotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-51  176.0   0.0    1.4e-51  175.8   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    8.6e-05   22.0   0.1    0.00014   21.4   0.1    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00019   20.5   0.1    0.00037   19.6   0.0    1.4  2  Aminotran_5      Aminotransferase class-V
     0.0095   15.2   0.0      0.025   13.9   0.0    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
       0.11   11.2   0.0       0.18   10.5   0.0    1.3  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.8   0.0   3.9e-55   1.4e-51       3     350 ..      38     388 ..      36     399 .. 0.89

  Alignments for each domain:
  == domain 1  score: 175.8 bits;  conditional E-value: 3.9e-55
                    EEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE CS
  Aminotran_1_2   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilv 98 
                    +i+L+++++    g   ++e+++     al  +++  y++++g  ++++a+ ++++ +  l+      v  g+G ++li++ +++l l+ +deil+
     EGE26279.1  38 IIKLNIGNPAPF-GLLAPEEIVRDV---ALNLPEASGYSDSQGIFSARKAILQYYQGKGLLSAIDVNDVYIGNGVSELIVMTMQAL-LDDDDEILI 128
                    677888888777.555666666665...78999***********************66666665555*******************.********* PP

                    EESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                    p p y+  + +++l+gg+ v y++ + + ++ dl+++e ++++      +tk+i++ +p+NPtG+v+t e l+ +++lakky l+++ De+Y    
     EGE26279.1 129 PMPDYPLWTAAANLAGGKAVHYRCLEDDHWQPDLKDIESKITS------RTKGIVIINPNNPTGAVYTDEILKSIAALAKKYDLVIMADEIYDRIL 218
                    *******************************************......*********************************************** PP

                    SSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH......HHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 195 fgsldavatranveeepnllivgslsKafGlaGeRvGyilgna......avvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqk 283
                    ++   +++  +++ ++  +l+ ++lsK+  +aG R G++ ++       ++++ l+ l++  l    ++q+a+ +a+   +  ++ l++   rl k
     EGE26279.1 219 YDGVTHTP-MCTITNDCLVLTYNGLSKSHRIAGYRAGWLMVSGkkhhatDFIEGLTMLASMRLCaNVPAQYAIQTAMGGYQS-MQALTAPTGRLYK 312
                    **655555.7777776678**********************8889****999999998876555489999999999999886.57*********** PP

                    HHHHHHHHHHHS.TEEEECCSCSSEEEEEETHH.....CHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEEC.TT CS
  Aminotran_1_2 284 rrkelrdeLael.glkvlasqsgmflltdlsae.....takelskkLleevgvyvtpgtsftv..pgrlRitv.Ag 350
                    +r   +++L+++ g++++++q++++++  +++      +++++   Ll e++v++++gt f    p ++R+ + ++
     EGE26279.1 313 QRNLAVERLNAIkGISCTMPQGAFYCFAKIDRDiypidNDMKFMMDLLIEEKVLIIQGTGFNWdqPDHFRVVFlPN 388
                    **************************************8888888866555********************99444 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   3.8e-08   0.00014      45     144 ..     105     211 ..      99     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.8e-08
                      SSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-.B-TTTSSB-GGGCGGG--TTEEEEEEB-...GGGB--.-..HHHHH CS
  DegT_DnrJ_EryC1  45 ssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvD.vdpdtynidpaaieaaitertkaIlpVh...lyGqva.d..mdalk 131
                       +G + l ++ +   ++++de+++p   +    +a+  +g k+v     + d +++d ++ie++it+rtk+I++++     G+v  d  ++++ 
       EGE26279.1 105 GNGVSELIVMTMQALLDDDDEILIPMPDYPLWTAAANLAGGKAVHYRcLEDDHWQPDLKDIESKITSRTKGIVIINpnnPTGAVYtDeiLKSIA 198
                      5666666655555667789******9999887777777777777665167788********************9972224677765355999** PP

                      HHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1 132 aiaakhglkvieD 144
                      a+a+k++l+++ D
       EGE26279.1 199 ALAKKYDLVIMAD 211
                      **********988 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     1e-07   0.00037      76     175 ..     111     211 ..      92     214 .. 0.76
   2 ?   -3.7   0.0       1.2   4.4e+03     255     299 ..     284     329 ..     282     334 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1e-07
                  HHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEB.ETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--...HHHHHHHHHHTT CS
  Aminotran_5  76 lvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipl.deegeldldelekllnektklvaithvsnvtGtiqp...veeigklakkkg 169
                  l+++++++ l+++dei++   ++   + ++++la   g  v++  l d++++ dl+++e++++ +tk + i   +n tG +     +++i++lakk++
   EGE26279.1 111 LIVMTMQALLDDDDEILIPMPDYPLWT-AAANLA--GGKAVHYRCLeDDHWQPDLKDIESKITSRTKGIVIINPNNPTGAVYTdeiLKSIAALAKKYD 205
                  444444333999999999999987655.555555..3444444433268899***************************963224489********** PP

                  -EEEEE CS
  Aminotran_5 170 alvlvD 175
                   ++++D
   EGE26279.1 206 LVIMAD 211
                  ***999 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHHHH.HCHHHHHHHHHHHHHHHHHHHHHCTSTTEEE CS
  Aminotran_5 255 vagiiglgaaleyl.eeigleaiekhekelaeyllerlkslpgvrl 299
                  v++ +++++a+    + + l+a   +  ++++ ++erl++++g+ +
   EGE26279.1 284 VPAQYAIQTAMGGYqSMQALTAPTGRLYKQRNLAVERLNAIKGISC 329
                  5555666666554424444555555666778888888888888877 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   6.9e-06     0.025     107     167 ..     158     211 ..     136     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.9e-06
                      TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 107 GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                       + dl+++e++i+       ++k i++ + nn   G v++ e l+ +aa+akky++ ++ D
       EGE26279.1 158 WQPDLKDIESKITS------RTKGIVIINPNNP-TGAVYTDEILKSIAALAKKYDLVIMAD 211
                      67788888888888......5778888899885.8***********************998 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     5e-05      0.18     127     217 ..     126     215 ..     113     231 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5e-05
                     EEEEES--HHHHHHHHHHT-EEEEEE.EETT..EE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTS CS
  Aminotran_MocR 127 llvtvpGydrhfllleelGielltvd.lqdd..GpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddaya 217
                     +l+++p y    +  +  G + +    l+dd   pd++ +e  +++    kGi+ +    nptG +++ e  + +aal     d+ i+ad+ y 
      EGE26279.1 126 ILIPMPDYPLWTAAANLAGGKAVHYRcLEDDhwQPDLKDIESKITS--RTKGIVIIN-PNNPTGAVYTDEILKSIAALA-KKYDLVIMADEIYD 215
                     5666666666666666666665554314555335999999987764..579*98875.58*****************95.5689******9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3114.55
//
Query:       EGE26280.1  [L=51]
Description: hypothetical protein EA1_05427 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      134  (0.00747392); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 386.87
//
Query:       EGE26281.1  [L=558]
Description: sulfite reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-58  196.3   0.1      8e-41  139.2   0.0    2.5  3  NIR_SIR       Nitrite and sulphite reductase 4Fe-4S domain
    7.7e-33  112.2   0.0    3.8e-17   61.9   0.0    2.7  2  NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half 
  ------ inclusion threshold ------
       0.05   13.4   0.0        0.2   11.4   0.0    2.0  1  SSURE         Fibronectin-binding repeat


Domain annotation for each model (and alignments):
>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.3   7.8e+03      99     118 ..      90     109 ..      84     113 .. 0.73
   2 !  139.2   0.0   1.3e-44     8e-41       1     156 [.     119     271 ..     119     273 .. 0.97
   3 !   54.6   0.0   1.4e-18   8.3e-15       7     151 ..     416     556 ..     411     558 .] 0.91

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.3
                 EEEEEEEEGGGHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR  99 sarlgfvpeeevlevveaiv 118
                   +l +v+ eev +++ ++ 
  EGE26281.1  90 NLQLNWVKLEEVPDILAKLA 109
                 455689****9999988765 PP

  == domain 2  score: 139.2 bits;  conditional E-value: 1.3e-44
                 .SSSCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   1 sganlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakkts 99 
                 sg+++rn+t++p+ag+ +e++ D +++++ i+++ + ++++ +lPrKfKiav g + +++a +++Digl  v++d++  gf++ vGGglgrt+  +k +
  EGE26281.1 119 SGNCIRNTTTDPYAGIHAEEIADPRPYCEIIRQWSTFHPEFAFLPRKFKIAVIGTRTDRAATQVHDIGLHLVERDGEI-GFEVIVGGGLGRTPIIGKLI 216
                 699***********************************************************************7766.******************** PP

                 EEEEEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHHHHHHHHHHHCCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 100 arlgfvpeeevlevveaivevyrdhgdrknrkkeRlkylverlGvekFrekveeelg 156
                     f+p  ++l++++ai++vy+ +g+r+n++k+R+k lve lG + F++kv+ e++
  EGE26281.1 217 H--EFLPRRHLLSYLDAILRVYNLEGRRDNKYKARIKILVESLGKDTFIQKVNDEWQ 271
                 *..7************************************************99986 PP

  == domain 3  score: 54.6 bits;  conditional E-value: 1.4e-18
                 CCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   7 nvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsarlgfv 105
                     cpg+  c+ a   t ++a+ ie+++ +    ++l    + ++sgc n c+++++ Dig++gv k+++   ++i +GG+ g++ + ++ + r   v
  EGE26281.1 416 DMIVCPGFDYCALANATTHNIAESIEKQFNDLDYLYDL-GNIRLNMSGCMNACAHHHVGDIGILGVDKKGEH-WYQISLGGNSGEHAKLGQILGR--AV 510
                 56689*********************777666666666.569**************************9999.*********************7..68 PP

                 EGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 106 peeevlevveaivevyrdhgdrknrkkeRlkylverlGvekFrekv 151
                  ++ev +++ +iv+vy+++  ++  + e ++ ++erlG+  F+ +v
  EGE26281.1 511 AADEVAQTIATIVNVYKNERIESHGHIESFAQVIERLGITPFKTAV 556
                 8888*************9999999999***************9987 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   6.4e-21   3.8e-17      11      68 ..      53     110 ..      46     111 .. 0.95
   2 !   47.5   0.0     2e-16   1.2e-12      16      66 ..     351     401 ..     350     404 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 6.4e-21
  NIR_SIR_ferr  11 mvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLae 68 
                   m+r+ +p G +++ qlr la+ia++y++g+ ++Ttr nlql +v+ e++++il++La+
    EGE26281.1  53 MLRIAIPYGLMSSHQLRTLAEIARDYDKGYGHFTTRTNLQLNWVKLEEVPDILAKLAA 110
                   9*******************************************************97 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 2e-16
  NIR_SIR_ferr  16 vpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeL 66 
                   vp+G+it +q+ a+ad+a++y+ geir T++Qnl+l +v+  dl  ++++L
    EGE26281.1 351 VPAGDITDAQMFAMADLADEYSLGEIRATHQQNLVLSDVKITDLYILWQKL 401
                   89******************************************9999887 PP

>> SSURE  Fibronectin-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.4e-05       0.2      17      60 ..     482     528 ..     474     534 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.4e-05
       SSURE  17 tkGkyfyqvslnGnta..Gkegqalldqlkang.tqtykatvkvyGn 60 
                  kG+++yq+sl Gn     k gq l   + a++ +qt  + v+vy n
  EGE26281.1 482 KKGEHWYQISLGGNSGehAKLGQILGRAVAADEvAQTIATIVNVYKN 528
                 69************852268899999999998734666667899977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4248.26
//
Query:       EGE26282.1  [L=125]
Description: hypothetical protein EA1_05437 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-19   67.6   0.0    9.6e-19   67.3   0.0    1.1  1  DUF934    Bacterial protein of unknown function (DUF934)


Domain annotation for each model (and alignments):
>> DUF934  Bacterial protein of unknown function (DUF934)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   5.3e-23   9.6e-19       4     107 .]      23     124 ..      21     124 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 5.3e-23
      DUF934   4 lasdedveelaedlerlalialefpkFtDGRgySqarlLRerlgykgelravGdvlrDqlallkrcGfdafelredkdleaaekalkefsvaYqaavde 102
                 l++d++++++++++++ +++   +++F+DGR +S+ r+ R++ g++ge+ + G++  Dq++++ ++G +af + +++++e+++k+l+++++ Y++++ +
  EGE26282.1  23 LTADATPNDIESAIAHQDCLIFLVANFMDGRIFSLIRHTRHQ-GFQGEIIVGGEFALDQANYFVKSGATAFLV-DETNVETLTKTLQDLATGYDGKAVS 119
                 78999***********************************76.****************************99.6799********************* PP

      DUF934 103 peplf 107
                 + plf
  EGE26282.1 120 HLPLF 124
                 99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1076.72
//
Query:       EGE26283.1  [L=449]
Description: uroporphyrin-III C-methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-50  170.4   0.0    7.9e-50  169.8   0.0    1.3  1  TP_methylase    Tetrapyrrole (Corrin/Porphyrin) Methylases
    1.6e-25   89.6   0.0    9.4e-25   87.1   0.0    2.3  3  NAD_binding_7   Putative NAD(P)-binding
    6.5e-12   45.0   0.0    1.4e-11   43.9   0.0    1.6  1  CysG_dimeriser  Sirohaem synthase dimerisation region
    1.2e-08   34.2   0.5    2.1e-08   33.4   0.5    1.5  1  Sirohm_synth_M  Sirohaem biosynthesis protein central
  ------ inclusion threshold ------
       0.01   14.9   0.1      0.017   14.2   0.1    1.3  1  LigB            Catalytic LigB subunit of aromatic ring-openi
      0.011   15.8   0.2      0.038   14.1   0.0    2.0  3  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.062   12.7   0.0       0.11   11.9   0.0    1.4  1  Spermine_synth  Spermine/spermidine synthase domain
      0.082   13.3   0.0       0.59   10.5   0.0    2.3  2  Radical_SAM     Radical SAM superfamily
       0.09   12.0   0.0       0.23   10.6   0.0    1.7  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
       0.15   12.3   0.0       0.42   10.9   0.0    1.7  2  GST_C           Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.0   4.4e-53   7.9e-50       2     212 ..     214     423 ..     213     424 .. 0.91

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 4.4e-53
  TP_methylase   2 lylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtgse 98 
                   +y+VG+G Gdp+llT +Alr++++ad+vl+d+ +++  +l+l++++ ++ +  +k+ ++++++++ei++ l++++++g++V++l++GDP+v+g+g+e
    EGE26283.1 214 VYIVGAGVGDPDLLTFKALRLMQQADIVLYDA-LVSNDILELCRRDSQKIFVGKKR-KDHTKTQDEINQLLVDYAKQGHRVLRLKGGDPFVFGRGGE 308
                   8****************************999.**********9997555555444.7999************************************ PP

  TP_methylase  99 lvealrareagieveviPGvsslqaaaarlgiplteggevlsvl.lpglakeeereleallan...gdtlvllkaprklaelaelLkea.lyddttp 190
                   ++ a++a  a+i+++v+ G++++ aa +++giplt++g ++sv  l+g++ ++ + ++ l ++    +tlv++++++ l ++++ L+ a l++d+ p
    EGE26283.1 309 EMLACQA--AHIPYQVVSGITAALAASSYAGIPLTHRGIATSVRfLTGCY-QTNEPFNGLNSTyqtDETLVFYMGLHALTKIIDSLISAgLPNDL-P 401
                   **99999..99**********************************88877.5555555555555559**************************77.* PP

  TP_methylase 191 vavveragtedervvrgtleel 212
                   +a++++a+++ ++v +gtl+++
    EGE26283.1 402 IAIISNASLPTQQVLTGTLTDI 423
                   *******************986 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   5.3e-28   9.4e-25       1     104 []       6     117 ..       6     117 .. 0.82
   2 ?   -1.5   0.0       1.9   3.3e+03      31      82 ..     238     255 ..     206     286 .. 0.59
   3 ?   -2.4   0.0       3.7   6.6e+03      86     104 .]     418     436 ..     402     436 .. 0.82

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 5.3e-28
  NAD_binding_7   1 lfldlkgkkvlvvGgGevAarkvrklleagakvtvvapev.keeleelvklaeeelekdlegad.......lviaatddrelneriaeaakarril 88 
                    lf++l++k+vl+vGgG++A+rk++ +++a+ak++v+a+ + +e+l+ l +++   ++k++e +d       lvi atdd+e+n  i++a ka++++
     EGE26283.1   6 LFFNLNNKTVLIVGGGDIAYRKAQLMAKAKAKLVVIAKHFeAEFLDFLQSHHHVFFQKSFEPIDlnqhtptLVIGATDDHEVNLTIHRASKAYGVP 101
                    799************************************64333333333443334555443333333477************************* PP

  NAD_binding_7  89 vnvadkpelcdfifpa 104
                    vn++d+p+lcd+ifpa
     EGE26283.1 102 VNIVDTPDLCDYIFPA 117
                    ***************7 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
  NAD_binding_7  31 akvtvvapevkeeleelvklaeeelekdlegadlviaatddrelneriaeaa 82 
                    a+++++                                  d+ +++ i e++
     EGE26283.1 238 ADIVLY----------------------------------DALVSNDILELC 255
                    444442..................................233333344444 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.7
  NAD_binding_7  86 rilvnvadkpelcdfifpa 104
                    + l  + dk+++++ i pa
     EGE26283.1 418 GTLTDIIDKKHQSNLIAPA 436
                    6678899999999999996 PP

>> CysG_dimeriser  Sirohaem synthase dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0     8e-15   1.4e-11       1      38 [.     152     189 ..     152     192 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 8e-15
                     THHHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHT-HHH CS
  CysG_dimeriser   1 slGrLAelagrlRdrVkarlpdvaaRRrFWerffdgpv 38 
                     +lG+LA+ ag++Rd++k  lp++++RR FWe +fd ++
      EGE26283.1 152 RLGELADKAGKFRDTIKNSLPTITERRYFWESIFDRAL 189
                     69********************************9765 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.5   1.2e-11   2.1e-08       3      28 .]     123     148 ..     121     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.2e-11
  Sirohm_synth_M   3 pLQIaiSTnGksPrLAaliRreierl 28 
                     p+ I +S+nGk+P+LA+liR +ie++
      EGE26283.1 123 PIVIGVSSNGKAPVLARLIRAKIESS 148
                     66699*******************85 PP

>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   9.7e-06     0.017     168     217 ..      10      59 ..       3      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.7e-06
        LigB 168 l.dknvlilgsGglsHqlegdeaakadaqtlllneefdeelldllkegrve 217
                 l +k+vli+g+G++  +  +++ aka+a+ + +++ f  e+ld l++  + 
  EGE26283.1  10 LnNKTVLIVGGGDIAYRKAQLM-AKAKAKLVVIAKHFEAEFLDFLQSHHHV 59 
                 349******************9.558888999**************97665 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.1e-05     0.038       9      87 ..       9      86 ..       4     106 .. 0.78
   2 ?   -4.0   0.0       7.9   1.4e+04      14      21 ..     213     220 ..     203     221 .. 0.78
   3 ?   -2.8   0.0       3.4   6.1e+03      72     110 ..     245     284 ..     230     286 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisatasee 87
                  +l++k+vl++G G +a + a+ ++++++k vv+a    +   ++ ++++++ +  +++e ++   +   +vi at  +e
    EGE26283.1  9 NLNNKTVLIVGGGDIAYRKAQLMAKAKAKLVVIAKHFEAEFLDFLQSHHHV-FFQKSFEPIDLNQHTPTLVIGATDDHE 86
                  799**************************9999988888888888877666.666666666666666666666666555 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 7.9
                   EEEEES-S CS
  Shikimate_DH  14 kvlliGaG 21 
                   +v ++GaG
    EGE26283.1 213 EVYIVGAG 220
                   7999**99 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.4
                   HHHT-SEEEE-SS.SSS-SB-HHHHHCCHHH.S..EEEEE CS
  Shikimate_DH  72 llaeadvvisata.seepilekeeveealkkrkkplllvD 110
                   +l ++d++  +   s+++ + k++  +++++ + ++llvD
    EGE26283.1 245 ALVSNDILELCRRdSQKIFVGKKRKDHTKTQDEINQLLVD 284
                   4445555544443033344444444444433335556666 PP

>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.2e-05      0.11      11      42 ..       4      65 ..       1      73 [. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.2e-05
                    HHHCCSSST-EEEEESSTT..............................SHHHHHHTTSTT- CS
  Spermine_synth 11 vplmlhknpkevLiiGGgD..............................Ggvlrevvkhntv 42
                    +pl+++ n+k vLi+GGgD                               +  + v++ +++
      EGE26283.1  4 LPLFFNLNNKTVLIVGGGDiayrkaqlmakakaklvviakhfeaefldfLQSHHHVFFQKSF 65
                    7999999************7777777776666666666666665555555555555555555 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.52   9.4e+02      47      72 ..      13      37 ..       6     145 .. 0.73
   2 ?   10.5   0.0   0.00033      0.59      21      78 ..     265     326 ..     244     406 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.52
                 SEEEEEESSTGGGSTTHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 47 vkevilgggepllypdfvellerlak 72
                 + ++i+ggg+  +++  +  +++ ak
   EGE26283.1 13 KTVLIVGGGDIAYRK-AQLMAKAKAK 37
                 566677777666643.3222222222 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00033
                  HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC.....CCTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxx RF
  Radical_SAM  21 rregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla.....vpgi 78 
                  ++ ++ ++++++ei +++  + a++g +++ l gg+p++  +  e+++++ + +     v+gi
   EGE26283.1 265 GKKRKDHTKTQDEINQLLVDY-AKQGHRVLRLKGGDPFVFGRGGEEMLACQAAHipyqvVSGI 326
                  56788999*************.8*******************999999999987666664443 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.23     136     214 ..       6      86 ..       1     105 [. 0.72
   2 ?   -2.4   0.0       1.2   2.1e+03     144     152 ..     213     221 ..     193     249 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
                  HCCSS-TSEEEEES-SHHHHHHHHHHHHHT-E.EEEEES.SSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 136 lklkllpkrivvvGgGyiGvElAaalaklgke.vtlvea.rdrllraldkelsaaleealekeGvevklgtsvkeidgnge 214
                  l  +l++k +++vGgG i+   A+ +ak++++ v++ ++   ++l  l++    + ++ +e  + + ++ t v  +++++e
   EGE26283.1   6 LFFNLNNKTVLIVGGGDIAYRKAQLMAKAKAKlVVIAKHfEAEFLDFLQSHHHVFFQKSFEPIDLNQHTPTLVIGATDDHE 86 
                  556677799********************9985555444134555778888888888888877777777777766665555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                  EEEEES-SH CS
                  xxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGy 152
                   + +vG+G+
   EGE26283.1 213 EVYIVGAGV 221
                  445555543 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       7.6   1.4e+04      18      41 ..      25      48 ..      16      53 .. 0.67
   2 ?   10.9   0.0   0.00023      0.42      12      74 ..     178     242 ..     171     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.6
                HHHHHHHHHHHHHHHHHHHHHHHH CS
       GST_C 18 ekkeelvdealekvaevlsaleee 41
                ++k++l ++a+ k+ ++ + +e+e
  EGE26283.1 25 YRKAQLMAKAKAKLVVIAKHFEAE 48
                456666666776666666666665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00023
                 HHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH..TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTT CS
       GST_C  12 fyvkaeekkeelvdealekvaevlsaleeelk..kqdylvGdkltlADialvpilnwlqrlglaf 74 
                 +y++++ ++++l+de    +   l+++ ++    +++y+vG +++ +D++ + +l+ +q+ ++++
  EGE26283.1 178 RYFWESIFDRALKDETIGTLSDELNQFKNHDTrlGEVYIVGAGVGDPDLLTFKALRLMQQADIVL 242
                 678888899999********999999999988899*********************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 3766.56
//
Query:       EGE26284.1  [L=212]
Description: maleylacetoacetate isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-09   35.7   0.0    1.6e-08   34.8   0.0    1.5  1  GST_N_3   Glutathione S-transferase, N-terminal domain
      2e-08   34.4   0.0    3.3e-08   33.7   0.0    1.4  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    2.7e-08   34.0   0.0    6.1e-08   32.9   0.0    1.5  1  GST_N     Glutathione S-transferase, N-terminal domain
    2.9e-06   27.2   1.2      6e-06   26.2   0.2    2.1  2  GST_C_2   Glutathione S-transferase, C-terminal domain
    7.5e-05   22.9   0.0    0.00016   21.8   0.0    1.5  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    0.00049   20.3   0.0      0.001   19.2   0.0    1.6  1  GST_C     Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   5.4e-12   1.6e-08       6      74 ..       9      80 ..       4      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 5.4e-12
                TSHHHHHHHHHHHHHT--EE..EE---.TTTTHHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH-GG CS
     GST_N_3  6 aSpyarrvrlaLnekglpve..vvevt.pgehdeellaknplgkvPvLeddgealtdSlaIidyLeelypgp 74
                 S  a rvr++L +kgl+++  + ++   +++  ++++ np+g vP+ edd +++  S aI+  Le+++p p
  EGE26284.1  9 RSSAAYRVRIFLALKGLSYQknFINLKqSQQTTKAYHQTNPQGLVPAWEDDSGSYGQSFAIMLLLEDKHPTP 80
                455699************99555555324555999**********************************976 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.1e-11   3.3e-08       3      69 ..      11      75 ..       9      76 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.1e-11
                HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  3 PwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                  a Rv+i+lalkgl ++ +++ l + + ++   + + np+g VP+  d d+  +  S +I+  le+
  EGE26284.1 11 SAAYRVRIFLALKGLSYQKNFINLKQSQQTT-KAYHQTNPQGLVPAWED-DSGSYGQSFAIMLLLED 75
                5688******************886666555.6***************9.77788899999888875 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0     2e-11   6.1e-08       4      71 ..       3      70 ..       2      74 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2e-11
                EEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHH CS
       GST_N  4 tlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedngkkltESraIl 71
                tl ++++s+ a+r+r++la kg++y+  +++++++++  + + ++np g vPa ed+     +S aI+
  EGE26284.1  3 TLHTYFRSSAAYRVRIFLALKGLSYQKNFINLKQSQQTTKAYHQTNPQGLVPAWEDDSGSYGQSFAIM 70
                677889999**************************9999******************99999999997 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       5.9   1.8e+04      62      68 ..     126     132 ..     124     133 .. 0.75
   2 !   26.2   0.2     2e-09     6e-06      15      44 ..     139     170 ..     135     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5.9
                 HHHHHHH CS
     GST_C_2  62 nlraWle 68 
                 +++aW++
  EGE26284.1 126 GVNAWYA 132
                 6889997 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 2e-09
                 HHHCTTT---SS...CTTCS--HHHHHHHHHH CS
     GST_C_2  15 ldaleahLadsp..flfGdqptlaDialapfl 44 
                 +dale+ L +    + fGd+pt+aD++l+p+ 
  EGE26284.1 139 FDALETTLSQTAgrYCFGDTPTFADCFLIPQM 170
                 79*******9999*****************75 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   5.2e-08   0.00016      30      91 ..     136     198 ..     108     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5.2e-08
                 HCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHH.HHHHHHHHTCC.CC-HHHHHHHHHHHTSHH CS
     GST_C_3  30 pkflkyfekvlkkkgggylvgdklTyADlalfq.vldgleeaeal.kkfpklkalyervearpk 91 
                 +  ++++e+ l++ +g y++gd+ T+AD +l   + +++++   + +++p+l++ ye  + +p+
  EGE26284.1 136 QLGFDALETTLSQTAGRYCFGDTPTFADCFLIPqMYNAIRFNV-DlSAYPTLCRIYEYANTQPA 198
                 556899******87888***********988761555555554.459******99998887775 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.4e-07     0.001      35      93 .]     139     197 ..     135     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.4e-07
                 HHHHHHHHH..TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  35 lsaleeelk..kqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 ++ale++l+     y  Gd +t+AD+ l+p   +++ ++++++  ++p l++ +e  + +p
  EGE26284.1 139 FDALETTLSqtAGRYCFGDTPTFADCFLIPQ--MYNAIRFNVDLSAYPTLCRIYEYANTQP 197
                 799******99899**************995..555555555557******9877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1538.93
//
Query:       EGE26285.1  [L=358]
Description: hypothetical protein EA1_05452 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-118  395.9  22.4   1.5e-118  395.9  22.4    1.4  2  DUF475    Protein of unknown function (DUF475)
    2.6e-14   53.3  25.3    3.6e-07   30.0  13.2    2.8  2  TerC      Integral membrane protein TerC family


Domain annotation for each model (and alignments):
>> DUF475  Protein of unknown function (DUF475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2      0.74   6.7e+03     120     153 ..       9      42 ..       6      46 .. 0.50
   2 !  395.9  22.4  1.7e-122  1.5e-118       1     295 []      50     355 ..      50     355 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.74
      DUF475 120 vivlvlllllaallakkaeqrqkvllagllgllt 153
                 + ++v l+++a +   +    + +l  g++++l+
  EGE26285.1   9 IFTFVCLVIAAWWGYSHGGISEMFLALGITAILA 42 
                 4455555555544444444444555556665555 PP

  == domain 2  score: 395.9 bits;  conditional E-value: 1.7e-122
      DUF475   1 fdnavvnaailkklsefWqklfltlGiliavfGmrlvfPlvivavsakldpiealklalekkdsyeelltaahpsiaafGgmflllvfldfllddrdik 99 
                 fdnavvna+ilk  + fW+k+flt+GiliavfGmrl+fP++ivav+a+l++ e+++lal+++ +y+e+l+a+h++i+afGgmflllvfl+f++ d+d +
  EGE26285.1  50 FDNAVVNASILKGWNDFWKKIFLTVGILIAVFGMRLIFPIAIVAVTANLGMGEVIHLALNNPVQYAEHLNAHHAEISAFGGMFLLLVFLNFMFGDKDVH 148
                 9************************************************************************************************** PP

      DUF475 100 Wlkwiekplaklgkldavsvvivlvlllllaallakkaeqrqkvllagllglltyllvdglerlfekde..............aakaaavraagkagla 184
                 W+kw+e  l k  k+da+sv ++lv+l+++  ++++ ++  + v++ag+ g+l+yl v++l++l+e d+              +++a++ ++  k g+a
  EGE26285.1 149 WFKWLESRLVKFSKVDAMSVFVALVVLMISMSWVEEAKQ--GVVMVAGIWGILVYLGVSVLSALLEGDGddkaavydakgreiTNTAGVSSTILKGGIA 245
                 *************************99999999885555..88***********************99888889888888874444446777789**** PP

      DUF475 185 lflylevldasfsfdGviGafaitkdivlialGlgigamfvrsltvylvrkgtldeyvylehGahyaigalavilllsieryeipevvtglvGvvfiga 283
                  flylevldasfsfdGviGafait+d+++i++Gl+igamfvrs+t+ylv+kgtl+++ ylehGahyaigala+i+lls++ +++pe++tgl+Gv+fi++
  EGE26285.1 246 GFLYLEVLDASFSFDGVIGAFAITNDVIVIMIGLAIGAMFVRSMTIYLVNKGTLSDFIYLEHGAHYAIGALAIIMLLSTR-FHVPEIITGLIGVAFIVL 343
                 *******************************************************************************7.****************** PP

      DUF475 284 slvssvirnrre 295
                 s+++s+++n+r+
  EGE26285.1 344 SVFNSIQYNKRH 355
                 *********985 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   8.3   6.1e-10   5.5e-06       3     108 ..      41     176 ..      39     180 .. 0.80
   2 !   30.0  13.2     4e-11   3.6e-07      45     180 ..     172     323 ..     161     324 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.1e-10
        TerC   3 lvlleivLsiDNlvviallvkklpeeqqkkalllGilgAlv.lRillillavallel........................fdlilligglfLlytavk 76 
                 l+++ei+Ls+DN+vv a + k  ++  +k  l++Gil+A++ +R+++ +++va+ +                            i ++gg+fLl++ ++
  EGE26285.1  41 LAIMEISLSFDNAVVNASILKGWNDFWKKIFLTVGILIAVFgMRLIFPIAIVAVTANlgmgevihlalnnpvqyaehlnahHAEISAFGGMFLLLVFLN 139
                 689***********************************9744*****99999999999****************999887669**************** PP

        TerC  77 ellekrlenklvkeekkkkkktkst......llavviq 108
                  ++ ++ + +  k+ +++  k ++       + +vv++
  EGE26285.1 140 FMFGDK-DVHWFKWLESRLVKFSKVdamsvfVALVVLM 176
                 999866.3445555555444444433333323333333 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 4e-11
        TerC  45 Rillillavallelfdlilliggl..fLlytavkellekr.....lenklvkeekkkkkktkst.......llavviqielaDlvfslDSvlaavaits 129
                  ++l+++++++ e+ + ++++ g+  +L+y++v+ l +        ++ +++ + ++  +t+          +a  + +e++D  fs+D v+ a+ait+
  EGE26285.1 172 LVVLMISMSWVEEAKQGVVMVAGIwgILVYLGVSVLSALLegdgdDKAAVYDAKGREITNTAGVsstilkgGIAGFLYLEVLDASFSFDGVIGAFAITN 270
                 3456666667766668888888875579999999998765777642233333333333333333666666644556789******************** PP

        TerC 130 dlfivitavilsilvlrflakllak..llerfptlkylalalllligvklvle 180
                 d+++++++++++ +++r++  +l++   l+ f +l+++a   ++ +++ ++l+
  EGE26285.1 271 DVIVIMIGLAIGAMFVRSMTIYLVNkgTLSDFIYLEHGAHYAIGALAIIMLLS 323
                 ******************99999864489*******************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2752.42
//
Query:       EGE26286.1  [L=61]
Description: hypothetical protein EA1_05457 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-07   30.6   2.5    2.4e-07   30.3   2.5    1.1  1  Oxidored-like  Oxidoreductase-like protein, N-terminal


Domain annotation for each model (and alignments):
>> Oxidored-like  Oxidoreductase-like protein, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   2.5   1.3e-11   2.4e-07       9      45 ..      13      52 ..       7      53 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.3e-11
  Oxidored-like  9 pkPeeP..dnCCmSGCvn.CVwdlYredleewkealkear 45
                   pkPe P   +CC S C   CV+++Yr d  ++ +++k+++
     EGE26286.1 13 PKPEYPeaWECCGSECGDyCVYEIYRRDKIDYDAQQKRLK 52
                   69****888*******755**************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 475.09
//
Query:       EGE26287.1  [L=310]
Description: branched-chain amino acid aminotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-55  186.2   0.0    8.8e-55  186.0   0.0    1.1  1  Aminotran_4  Amino-transferase class IV
  ------ inclusion threshold ------
       0.18   11.8   0.0       0.42   10.6   0.0    1.5  1  DUF1930      Domain of unknown function (DUF1930)


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0   0.0   9.8e-59   8.8e-55       1     223 []      36     269 ..      36     269 .. 0.97

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 9.8e-59
  Aminotran_4   1 glfEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsengrlrllvsrgggglgaatsepsvavyvsalppgpese 93 
                  ++fE++r+y   +g+   f+l++H eRL +sa++++l+ ++  +el ++ +++++ nn   +++r+l++ g+++lg+a ++++++  ++a+++g++  
   EGE26287.1  36 AVFEGVRAYqtpDGRTaiFRLQAHTERLLNSAKIFQLNCTYGFDELVQAQKDVVRLNNLASAYIRPLIWVGSEKLGIAAKDNTIHAAIAAWHWGAYLG 133
                  59**********55544499****************************************************************************** PP

  Aminotran_4  94 ke.....lplvtssdvrrdapsplpgaKtln.yldnvlarreakergadevllvdedgnvtEgstsNvfivkggelitPplssgiLpGitrrallela 185
                   e     +++ tss + ++++ + ++aK  + y+ ++la++e  ++g+de++l+d++g+v+ gs  N+f+vk+gel tP+ls+g L+Gitrr+++e a
   EGE26287.1 134 EEgikkgIRVKTSSYTHHHPNITMCKAKAASnYPVSILANQEVTRNGYDEAILMDPQGFVCQGSGENLFLVKNGELHTPDLSGGALDGITRRTIIEFA 231
                  *****************************999****************************************************************** PP

  Aminotran_4 186 kalgleveereitlkdleeadeafltntlrgvlpvrsi 223
                  k+lg++v+er+it ++   ade+f+t+t+++v+p+r++
   EGE26287.1 232 KDLGIKVIERRITRDEFYLADEVFMTGTAAEVTPIREY 269
                  ***********************************985 PP

>> DUF1930  Domain of unknown function (DUF1930)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.7e-05      0.42      24      47 ..      11      34 ..       4      38 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.7e-05
                EETTEEESS--HHHHHHHTT-BTT CS
     DUF1930 24 vvDGavverPDaElksAlvHlHiG 47
                  DGa+ve+PDa ++     lH G
  EGE26287.1 11 WLDGALVEQPDAKVHVLTHSLHYG 34
                57************9877779988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2394.79
//
Query:       EGE26288.1  [L=937]
Description: bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.4e-127  421.8   0.1    1.4e-64  217.9   0.0    2.8  2  GlnE           Glutamate-ammonia ligase adenylyltransferase
    2.7e-46  157.3   3.0    3.6e-36  124.5   0.1    2.8  2  GlnD_UR_UTase  GlnD PII-uridylyltransferase


Domain annotation for each model (and alignments):
>> GlnE  Glutamate-ammonia ligase adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.9   0.0   2.4e-63   2.1e-59      53     244 ..      69     262 ..      19     269 .. 0.94
   2 !  217.9   0.0   1.6e-68   1.4e-64       3     249 ..     537     790 ..     535     792 .. 0.93

  Alignments for each domain:
  == domain 1  score: 200.9 bits;  conditional E-value: 2.4e-63
                 TS-TCHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSCCCCT.TCC-..SEEEEE-HHHHTT---TT--E CS
        GlnE  53 avedeeqliealRqfkreellriavadllglltveevsraLseLaeavieaaldlllrqvvaelgtpvdek.gepq..qllvlGmGklGgaELnysSDi 148
                 + ++ee+++  lR++++  +l+  ++d l ++++ee++++Ls++a+++i+   d++++++++++g+p+ ++ +++   +l++++mGklG+ ELn sSDi
  EGE26288.1  69 DFTNEEMVMSGLRKLRQMLMLKWIWQDALSVISLEELTHELSDFADSCIQFSKDFVYHKLTKRYGEPMIRQkNKTLkdELAIIAMGKLGAQELNLSSDI 167
                 56789**************************************************************987754433479******************** PP

                 EEEEEE---TT-BSSSS-SBHHHHHHHHHHHHHHHHH--BTTB-S--EE-TTSTTGGGS-SEEEHHHHHHHHHHC--HHHHHHHCT-EECCE-HCH CS
        GlnE 149 DliflydedaeteggkksidaakfftrlaqrlisiLsartadGvlYevDlrLRPsGesGplvlsvaAfekYyeeeartWErqAlirArvvagdael 244
                 Dlif++ +++et +gkk id+ kf+  l++ +i++L+++t++G++++vD+rLRP G+  plv+++aA++kY+ +++rtWEr A ++Arvv + ++ 
  EGE26288.1 168 DLIFVHINNGET-NGKKVIDNYKFMRDLGRGIIKLLDENTEHGFVFRVDMRLRPWGDGSPLVMHMAALDKYFSQHGRTWERFAWLKARVVNDISDE 262
                 ***********9.*****************************************************************************975554 PP

  == domain 2  score: 217.9 bits;  conditional E-value: 1.6e-68
                 HHHHHHHH-HHHHHHHHH-CHHHHHHCHCHHHTSGGGCCCHHHHHHHHTTTS-TC..HHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH CS
        GlnE   3 qlaevlaaSpfvaellarrprlldelldkellaepkeleaaaaelaealaavede..eqliealRqfkreellriavadllglltveevsraLseLaea 99 
                 +l+  l+aS ++a  la++p lld +l+k +  ++++ ++++  l++ l++ve    e  + ++R fk+ ++l +a ad+lgl ++++vs++L+++ae 
  EGE26288.1 537 RLIPTLSASLWIARELAHHPVLLDTFLQK-RYLHLPDKAELTDILRQSLLRVEPFddEGYLTTIRLFKKTQVLAVATADVLGLRHTMKVSDSLTYIAEV 634
                 688899**********************9.67788888999***********987779***************************************** PP

                 HHHHHHHHHHHHHHHHCTSCC...CCTTCC-..SEEEEE-HHHHTT---TT--EEEEEEE---TT-B.SSSS-SBHHHHHHHHHHHHHHHHH--BTTB- CS
        GlnE 100 vieaaldlllrqvvaelgtpv...dekgepq..qllvlGmGklGgaELnysSDiDliflydedaete.ggkksidaakfftrlaqrlisiLsartadGv 192
                 v+e al  ++++++ ++g+p    +e+++ +  +++++G+GklGg E++y+SD+Dl+fl+  d+++e +g+k i++ kf++rl q+l++ L+++t dG 
  EGE26288.1 635 VLESALYRVFHELSVKHGFPLlntHERASIAdcGFAIIGYGKLGGLEMGYASDLDLVFLHRIDEKSEtDGEKPISGMKFASRLIQKLMNYLATQTRDGR 733
                 *****************99862213443333479****************************999999******************************* PP

                 S--EE-TTSTTGGGS-SEEEHHHHHHHHHHC--HHHHHHHCT-EECCE-HCHHHHHH CS
        GlnE 193 lYevDlrLRPsGesGplvlsvaAfekYyeeeartWErqAlirArvvagdaelkaafl 249
                  Ye+D+rLRPsG++G+ v+s +Af+ Y+ ++a+ WE+qAl+rAr + gd  + +af+
  EGE26288.1 734 AYEIDTRLRPSGNAGVPVISAHAFKMYQTDKAWAWEHQALVRARGLTGDVLVLQAFD 790
                 ***********************************************9988877776 PP

>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.1     4e-40   3.6e-36       1     143 [.     289     426 ..     289     429 .. 0.96
   2 !   32.4   0.4   9.9e-12   8.8e-08       3      98 ..     813     912 ..     811     926 .. 0.87

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 4e-40
  GlnD_UR_UTase   1 rfmkakieeekarrgrsdtllepniKlGpGGlRdiefivqvlqlirGgrdpel.rerstlealeelvergllteeeakelreayrflrrlehrLql 95 
                    r+mka+i  ++ +r+  d     n+KlG GG+Rdiefivq++ li+Gg + ++  +++ l+ l+ l+e+++++++e k+l++ayrflrrleh++q+
     EGE26288.1 289 REMKAMIINQQIQRQDLD-----NVKLGVGGIRDIEFIVQAFALIYGGHHIRIaENPACLDCLTVLTELDYIDNDESKQLAAAYRFLRRLEHAIQA 379
                    78**********9*****.....***************************999566789************************************* PP

  GlnD_UR_UTase  96 ladrqthrLpfdeeeqrrlaealgyredkaafmkelfqhaerVrrlfe 143
                    + d+qt+ Lp d +e+ ++a+ lgy e+ +af++ l +h+++V+r f 
     EGE26288.1 380 RYDQQTQCLPSDSDEMLAIAQTLGY-ESVKAFRSVLDAHRHNVSRPFG 426
                    *************************.*****************99775 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 9.9e-12
  GlnD_UR_UTase   3 mkakieeekarrgrsd.t..llepniKlGpGGlRdiefivqvlqlirGgrdpel.rerstlealeelvergllteeeakelreayrflrrlehrLq 94 
                    m++k++ + + + + +    + ++n+K+  GGl dief++q + l++  + p+l   +++++  ee++++g+ t++ +++l +ay  lr+  h L 
     EGE26288.1 813 MRQKMQHHLGTKTMRRaYgeTEQFNLKQDFGGLIDIEFLAQFMVLAYANKYPNLaIWPDNVRIFEEVEKTGIWTANRCQKLTQAYLDLRKKTHELA 908
                    78888888666655553345889*******************************55799*******************************999997 PP

  GlnD_UR_UTase  95 llad 98 
                    l ++
     EGE26288.1 909 LSEQ 912
                    6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6468.90
//
Query:       EGE26289.1  [L=125]
Description: DsrE/DsrF-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-21   76.2   0.0    3.3e-21   75.8   0.0    1.2  1  DrsE      DsrE/DsrF-like family
  ------ inclusion threshold ------
      0.092   12.8   0.0       0.16   12.1   0.0    1.3  1  S1_2      S1 domain


Domain annotation for each model (and alignments):
>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   3.6e-25   3.3e-21       3     117 .]       2     125 .]       1     125 [] 0.93

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 3.6e-25
                 EEEEE-S-TTTBSHHHHHHHHHHHHHTTT-EEEEEE-GGGGGGGBS---TGGGTS---GGGGGGCGG.GT-EEEEEHHHHHHTT--GGG.......... CS
        DrsE   3 vfilvtggpygseaarealelalaaaalghevsvffygdGvllllkgqtanpadeknlaellkalke.ygvklyvCgqaakargldede.......... 90 
                 +++lvt++p++++ +++a e a+  + lg ++svffygdG++ +++    + ad +++a++++al++ +g++l vC+++a arg+ +++          
  EGE26289.1   2 ILLLVTSSPHSHA-GKLAVEYATKQLHLGNQISVFFYGDGAYTANR-LMWQTADVPSVAKQWQALSNnHGITLPVCVSTALARGVCDAQnatrhgligd 98 
                 68899****9999.********************************.55566699************999****************999******9888 PP

                 .E-T--EEEE-HHHHHHHHHH-SEEEE- CS
        DrsE  91 .dlgvgvevsglgelaelqnegdrvitf 117
                  +l  +++++gl+ela ++++  +v++f
  EGE26289.1  99 nLL-PPFSLVGLSELAMMIDDTTSVVQF 125
                 444.5*********************98 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.7e-05      0.16      29      51 ..      17      39 ..      13      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
        S1_2 29 LpkkevpeeleiGdeveVFvYtD 51
                L  ++++++l+ G ++ VF Y D
  EGE26289.1 17 LAVEYATKQLHLGNQISVFFYGD 39
                5567999**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 937.19
//
Query:       EGE26290.1  [L=101]
Description: hypothetical protein EA1_05477 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 750.07
//
Query:       EGE26291.1  [L=106]
Description: putative DsrC-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-29  100.1   0.0    1.1e-28   99.9   0.0    1.0  1  DsrC      DsrC like protein
     0.0085   16.5   0.0      0.013   15.9   0.0    1.2  1  DUF3662   Protein of unknown function (DUF2662)


Domain annotation for each model (and alignments):
>> DsrC  DsrC like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   1.2e-32   1.1e-28       8     107 .]       6     106 .]       2     106 .] 0.97

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 1.2e-32
        DsrC   8 eldeegfLkdledwseevaealakeegieLteehwevikflreyyeeygvapairklvkalkkelgeekgnskelyelFpkgp.akqackiAGlpkPtg 105
                 +ld++g+Lk+++dw+ ++a+ la++ g++L++eh+++i  +r ++e+y+++p++r l+k+l ++l + + ++++l++lF++g  a+++++iAGlpkP +
  EGE26291.1   6 SLDDDGHLKNHTDWTPKIAQRLADTIGVTLESEHYQIIGEVRVFFETYHHSPSTRPLIKHLMASLPNLDISNQKLQKLFNTGLvARHVNRIAGLPKPPN 104
                 68*******************************************************************************98799************* PP

        DsrC 106 Cv 107
                 C+
  EGE26291.1 105 CL 106
                 *7 PP

>> DUF3662  Protein of unknown function (DUF2662)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-06     0.013      65     103 ..      14      52 ..       7      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-06
     DUF3662  65 erlasleeelaeeladllaehareqgytlvgpvtVelee 103
                 ++ +++ +++a++lad +   +++++y+++g+v+V +e 
  EGE26291.1  14 KNHTDWTPKIAQRLADTIGVTLESEHYQIIGEVRVFFET 52 
                 567789*****************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 788.08
//
Query:       EGE26292.1  [L=160]
Description: putative acyl-CoA thioester hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-17   63.3   0.3    3.3e-17   62.6   0.3    1.3  1  4HBT      Thioesterase superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.3   1.8e-21   3.3e-17       2      75 ..      29     101 ..      28     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.8e-21
                 SSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTS CS
        4HBT   2 GvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedg 75 
                 G+vhgG++l+llD++a+a++++++g+ ++v+ + +++ f+ p+ +g+ +t+ ar++++g+ts++v ++v +e+ 
  EGE26292.1  29 GNVHGGTILKLLDQVAYACASRYAGG-YVVTLSVDQVIFKEPIYVGELVTFLARINHVGTTSMEVGIRVEAENI 101
                 99***********************8.******************************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1206.10
//
Query:       EGE26293.1  [L=464]
Description: HSR1-related GTP-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-81  274.1   0.3    1.7e-81  273.8   0.3    1.1  1  DUF3482         Domain of unknown function (DUF3482)
    1.6e-14   54.0   0.1    4.6e-14   52.5   0.0    1.9  2  MMR_HSR1        50S ribosome-binding GTPase
    4.5e-06   26.4   1.5      0.055   13.0   0.7    2.7  2  GTP_EFTU        Elongation factor Tu GTP binding domain
      0.004   17.1   0.2      0.012   15.5   0.2    1.8  1  RsgA_GTPase     RsgA GTPase
      0.005   16.3   0.3      0.016   14.6   0.1    1.9  2  SRPRB           Signal recognition particle receptor beta sub
  ------ inclusion threshold ------
      0.019   15.2   0.0      0.037   14.2   0.0    1.5  1  Roc             Ras of Complex, Roc, domain of DAPkinase
      0.025   13.9   0.0       0.04   13.2   0.0    1.4  1  AIG1            AIG1 family
      0.031   14.3   0.2        3.9    7.5   0.1    2.6  2  Dynamin_N       Dynamin family
      0.034   13.7   0.0      0.056   13.0   0.0    1.3  1  Ras             Ras family
      0.052   13.0   0.0       0.11   11.9   0.0    1.5  1  TniB            Bacterial TniB protein
       0.13   11.8   0.3        0.3   10.6   0.0    1.8  2  FeoB_N          Ferrous iron transport protein B
       0.17   12.2   0.6        1.3    9.4   0.1    2.4  2  AAA_16          AAA ATPase domain
       0.19   11.7  10.7       0.34   10.9  10.7    1.4  1  Gly-zipper_Omp  Glycine zipper


Domain annotation for each model (and alignments):
>> DUF3482  Domain of unknown function (DUF3482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.8   0.3   1.3e-84   1.7e-81       1     293 [.     173     450 ..     173     451 .. 0.98

  Alignments for each domain:
  == domain 1  score: 273.8 bits;  conditional E-value: 1.3e-84
     DUF3482   1 reaLarlnlhavreFDavaaefeeelrLyesLatLleekreaLqrliealeeqrqarreeaaeliaelLidvaayreeadeeaeeaakekllerlqekv 99 
                 re+L+r+ lh+v  FD+va++fe+e++L+++L++L ++ ++++++l +++ ++++++ e ++e+ia++Li+vaayr++    a+ a+++ +l+++q++v
  EGE26293.1 173 REMLSRRALHVVNAFDTVAFDFENEMALWSNLSLLSNH-DQNIEKLKQERSDTWHELLEIGSEMIADFLINVAAYRQK---IASGADTTPTLRQMQNAV 267
                 89*******************************99998.99*************************************...****************** PP

     DUF3482 100 RqrEqkcveaLlklYkfreadleeaelpllegrwqqDlFspetlkelGlslgaGaaaGAaaGagiDlavgGltLGaaaaiGalaGglaatlkrygkrll 198
                 Rq+E  ++++Ll+lY+f+++++  ++  ++  + +qD+F+ e l ++G+++++G ++G+++GagiD+a++G++LG+++aiG+++Ggl+ + ++++++++
  EGE26293.1 268 RQAEPVLHDNLLNLYQFYHQNIVSDCPDIK--SQTQDVFDGELLAQYGIRTAGGSVTGMIIGAGIDVATLGASLGLGTAIGGVIGGLLPNSTTLKDKAM 364
                 ******************************..89*********************************************************98888888 PP

     DUF3482 199 aklkGareltvddatlrlLllRallllaalarrgHAardaielsseeakewtseklpeelkklekkarahpewsslnakadeeeakrqelieala 293
                     G+++l+++  t++lL++Ra++l+++l++rgHA+  +i+ s+++  +w+s+klp+++    kkar+hp+ ssl++++d+++a r++l+++la
  EGE26293.1 365 ----GVQTLMINAPTMTLLAARAQNLHHHLRHRGHASLLDITASDKNL-PWQSDKLPSPI----KKARSHPNYSSLTDNDDDKTALRSDLAQHLA 450
                 ....*******************************************9.***********....*****************************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   3.4e-17   4.6e-14       2     113 ..      11     160 ..      10     161 .. 0.70
   2 ?   -2.4   0.0       3.6     5e+03      77     101 ..     178     218 ..     166     231 .. 0.52

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 3.4e-17
                 EEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEE.ETT.EEEEEEECGGC..............................SS..HHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvk.lkg.keielvDtpGl..............................ie..gaseek 64 
                 + i+G++NvGK++L+++l+++    +v++   tTr+++   +  +++ + i+l DtpGl                              i+  +a+ e 
  EGE26293.1  11 ISIIGHTNVGKTSLLRTLLRDsdFGEVKNASATTRHVVAVDILsKDNvPLITLHDTPGLedatgvmdflqnhtdgradgmerlsvflqaIHhnDARLEG 109
                 89*****************986567************98887623445779*******88888888888888777777777777665553322122111 PP

                 ...HHHHHHHHHHCTSEEEEEEETT...TTCSHHHHHHHHHHHHHTTSEEEEEEE CS
    MMR_HSR1  65 ...glgkaflaleeadlillvvdas...eeklkpldeeleelleeakkplilvln 113
                    +++k +++l ead++l+++da+    +k+k++     ++l  ++ p++ v+n
  EGE26293.1 110 dfsQEAKVIKSLLEADIALYIIDAKepvLGKYKDE----LAILAGSGTPILPVFN 160
                 23346777777889*********884333344444....3333334577777777 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.6
                 SEEEEEEETT................TTCSHHHHHHHHHHH CS
    MMR_HSR1  77 dlillvvdas................eeklkpldeeleell 101
                   +l+vv+a                  + l++ d+++e+l+
  EGE26293.1 178 RRALHVVNAFdtvafdfenemalwsnLSLLSNHDQNIEKLK 218
                 44566666554444444444444433223444555555554 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.7     4e-05     0.055       4      37 ..       9      42 ..       6      86 .. 0.75
   2 !   11.4   0.0   0.00013      0.17      82     153 ..     110     183 ..      99     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-05
                EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH CS
    GTP_EFTU  4 rnigiighvDhGKtTLtdrLlyktgaiskkgeka 37
                 +i+iigh++ GKt+L+ +Ll ++   + k++ a
  EGE26293.1  9 TTISIIGHTNVGKTSLLRTLLRDSDFGEVKNASA 42
                689******************8875544433333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00013
                 GGHHH..HHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  82 dFske..virglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk 153
                 dFs+e  vi++l  +D+a+ ++da+e v  + +  l ++   g+pi  + N +  +++ ++   e+++++  ++
  EGE26293.1 110 DFSQEakVIKSLLEADIALYIIDAKEPVLGKYKDELAILAGSGTPILPVFNFINDPNHHMQAWREMLSRRALHV 183
                 5655433899*****************************************99999999999999999887555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   8.8e-06     0.012     101     162 ..      10      70 ..       5      73 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.8e-06
                  EEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT.....TEEEESS-SSS CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae.....gglliDtPGfr 162
                  t+ ++G++ vGK++L+ +ll +     gev++++ +    T++v  +++ +       +l DtPG++
   EGE26293.1  10 TISIIGHTNVGKTSLLRTLLRD--SDFGEVKNASAT----TRHVVAVDILSkdnvpLITLHDTPGLE 70 
                  6789****************98..778999998765....555555544332212245678****97 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.2e-05     0.016       5      60 ..      10      70 ..       6      86 .. 0.84
   2 ?   -1.6   0.0       1.1   1.6e+03     127     143 ..     112     128 ..     101     147 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
                EEEEE-STTSSHHHHHHHHHHS....S---B---SS-EEETTG...GGT.T-SEEEETT-G CS
       SRPRB  5 avllvGlsdsGKTslftrLttd....svkktvtSqessaalkvksekgs.kltliDfPGhe 60
                ++ ++G ++ GKTsl+  L+ d    +vk++ +     +a ++ s+++   +tl D PG e
  EGE26293.1 10 TISIIGHTNVGKTSLLRTLLRDsdfgEVKNASATTRHVVAVDILSKDNVpLITLHDTPGLE 70
                7889*****************9888888999888999999999666655268999***976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
                 ---HHHHHHHHHHHHHH CS
       SRPRB 127 akspklikdaLEkElnk 143
                 ++++k+ik  LE ++  
  EGE26293.1 112 SQEAKVIKSLLEADIAL 128
                 78899999999999975 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.7e-05     0.037       2      69 ..      11      72 ..      10      84 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.7e-05
                EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCT CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerf 69
                + ++G ++vGKtsll+ +++d+   + k+   ++ +t++v+ ++ +++d +v    + + Dt G e+ 
  EGE26293.1 11 ISIIGHTNVGKTSLLRTLLRDSDFGEVKN---ASATTRHVVAVDILSKD-NV--PLITLHDTPGLEDA 72
                679**************998654333222...22223333344443332.22..34566677776665 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.9e-05      0.04       2      73 ..      10      83 ..       9     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
                EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEE.EETT.EEEEEEE--SCCCTTCCHHCHHHHH CS
        AIG1  2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksr.twdg.kkinViDTPglfdlsvsadkiskei 73
                ti ++G t +Gk +   ++l+++ F    +a++ t+++  +   ++d+   i   DTPgl d     d+++++ 
  EGE26293.1 10 TISIIGHTNVGKTSLLRTLLRDSDFGEVKNASATTRHVVAVDIlSKDNvPLITLHDTPGLEDATGVMDFLQNHT 83
                7889*********************999889999999988888555543567888*******999998888765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0029       3.9       1      38 [.      11      50 ..      11      58 .. 0.75
   2 ?    5.2   0.0     0.015        20      93     130 ..      50     104 ..      36     147 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0029
                EEEEEBTTTTHHHHHHHHHTS--S-..--SSS---S-EEE CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilp..rgpnptTrrplel 38
                i ++G+++ GK+S+l  Ll++  +   + +  tTr ++ +
  EGE26293.1 11 ISIIGHTNVGKTSLLRTLLRDSDFGevKNASATTRHVVAV 50
                789****************876554223444777777665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.015
                 EEEEET.TS-SEEEEE---B-S.SSGTTS...............HHHHHHHSTTE CS
   Dynamin_N  93 lkilsl.lvkgltlvDlPGlds.vnkrdq...............elvkeyikkad 130
                 + ils  +v+ +tl D+PGl + + + d                ++  ++i+++d
  EGE26293.1  50 VDILSKdNVPLITLHDTPGLEDaTGVMDFlqnhtdgradgmerlSVFLQAIHHND 104
                 555554146789********98333333366666666666666633333333333 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.1e-05     0.056       4      65 ..      13      76 ..      10      86 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.1e-05
                EEESTTSSHHHHHHHHHHS.SCSSSCTTTSS.EEEEEEEEEETTEEEEEEEEEETTSGGGHHHH CS
         Ras  4 lvGdsavGKtslllrfvkd.kFkeeyesTig.vdfytkeievdgkevkleiwDTAGqeefkslr 65
                ++G ++vGKtsll    +d +F e +++          +i  +++   ++++DT G e+ + + 
  EGE26293.1 13 IIGHTNVGKTSLLRTLLRDsDFGEVKNASATtRHVVAVDILSKDNVPLITLHDTPGLEDATGVM 76
                8************998865279887665552044555566666888889*******99876665 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.1e-05      0.11      30      79 ..       3      54 ..       1      59 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.1e-05
        TniB 30 pkrkrmpnlllvGdsnnGKtmivekFarlhppe..kdedaekvpvlvvqapp 79
                p+ +    + ++G++n+GKt++++   r+      k+++a+++ v++v++ +
  EGE26293.1  3 PTPSHLTTISIIGHTNVGKTSLLRTLLRDSDFGevKNASATTRHVVAVDILS 54
                6667778899*****************9997552267778899999998755 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00022       0.3       2      56 ..      10      68 ..       9      75 .. 0.75
   2 ?   -3.6   0.1       5.3   7.3e+03      63      89 ..     111     134 ..     110     135 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
                EEEEEESTTSSHHHHHHHHHTTS..EEEEESTTSSSEEEEEEEEETT..EEEEEEE--- CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgak..qkvgNwpGvtvekkegklklkg..keveivDlPG 56
                t+ ++G  nvGkt+l+ +l   +   +v N + +t     + +  k+    +++ D PG
  EGE26293.1 10 TISIIGHTNVGKTSLLRTLLRDSdfGEVKNASATTRHVVAVDILSKDnvPLITLHDTPG 68
                7999*************998876335888888888777766665554234567778888 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.3
                 SSHHHHHHHHHHHCTSSSEEEEEEEGG CS
      FeoB_N  63 yseeekvardflleeepdvvvnvvdat 89 
                 +s+e kv +++l   e+d+ + ++da+
  EGE26293.1 111 FSQEAKVIKSLL---EADIALYIIDAK 134
                 577777777777...478888888886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00092       1.3      25      47 ..       9      31 ..       2      73 .. 0.78
   2 ?   -0.2   0.1       0.8   1.1e+03     106     132 ..     420     459 ..     371     461 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00092
      AAA_16 25 elvllsGesGvGKsslvrellra 47
                  + ++G+  vGK+sl+r+llr 
  EGE26293.1  9 TTISIIGHTNVGKTSLLRTLLRD 31
                57889***************983 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.8
      AAA_16 106 a............avpelagaeasrllellkrll.allsr 132
                 +            + ++++ a++s+l+++l+++l + l+r
  EGE26293.1 420 KkarshpnyssltDNDDDKTALRSDLAQHLAEILvMHLQR 459
                 1555555555554667777777799999999999776665 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  10.7   0.00025      0.34       4      38 ..     317     353 ..     316     367 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
  Gly-zipper_Omp   4 aiGAaaGaliGg....avggrgtGaliGAavGaavGgli 38 
                     a+G+++G +iG+    a+ g+  G   G+a+G+++Ggl 
      EGE26293.1 317 AGGSVTGMIIGAgidvATLGASLG--LGTAIGGVIGGLL 353
                     678888888888544466677444..5666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3420.01
//
Query:       EGE26294.1  [L=439]
Description: ABC1 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-29  100.2   0.0    1.5e-28   99.4   0.0    1.4  1  ABC1      ABC1 family
    2.1e-05   24.5   0.7    8.1e-05   22.7   0.4    2.0  2  APH       Phosphotransferase enzyme family
    0.00061   19.4   0.0     0.0029   17.2   0.0    1.9  2  RIO1      RIO1 family
     0.0027   17.1   0.2     0.0064   15.9   0.0    1.7  2  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   3.3e-32   1.5e-28       6     118 ..     114     229 ..     109     230 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 3.3e-32
        ABC1   6 kleeiFaefdeePiAaASiaqVhrAklksgeeVavKvqrpgvkkriksDlellkllakllkkflkelr.ldleelvdefskslleEldferEAknaekf 103
                  l +iF+ +d++P+A+ASiaqVh+A+l +g++Va+K+q+pgv+  +++Dl +l+ ++ +l+k +++l+  +l  ++de++ ++l E df+ E+++ +kf
  EGE26294.1 114 GLGDIFSYIDPKPLASASIAQVHKAVLADGRQVALKIQKPGVDTVMQTDLGVLHSVFWVLEKAVPSLKaANLAPIIDEMRARMLAETDFLAESHHIDKF 212
                 57799***************************************************************99***************************** PP

        ABC1 104 renfaklk..evkvPkv 118
                   +++++   +v+ Pkv
  EGE26294.1 213 LAHLHQVGntQVTAPKV 229
                 *****998445899998 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   6.3e+03      85     137 ..      46      96 ..      32     114 .. 0.58
   2 !   22.7   0.4   1.8e-08   8.1e-05     101     197 ..     212     311 ..     209     316 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCC CS
         APH  85 klsaaqlpellealgeflaalhqvdpaalpladflaqdlellrqlesatarll 137
                 k++a  l+e++e++g +  +l q+   a+ ++ f++ ++  ++   ++ta+ +
  EGE26294.1  46 KMDAYLLREAFEQMGVTYIKLGQF--IASTPSIFPKAYVLAFQGCLDQTAPVR 96 
                 677777777777777777777666..445555555555555554444444444 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.8e-08
                 HHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHH.CCCGCCTCC...HHHHHHHH...HHHHHHHH--S.SS-EEEE-SS-SGGGEEEC..TTEEEEE- CS
         APH 101 flaalhqvdpaalpladflaqdlellrqlesata.rllaselld...lleeleeq...vlaalaallpg.elptvllHgDlhpgNllvdpddgrvtGvi 191
                 fla+lhqv+ ++   +  +++  +   ++++     +l  e l     + +       +++ +++++      t+  H Dlh gNl++  ddgr+ +++
  EGE26294.1 212 FLAHLHQVGNTQVTAPKVHHRLSTKKVLVMDLLVgKSLVDESLVwdgTVGK---DskkIMNDVLDTWFLsLMMTGEFHADLHAGNLMLL-DDGRI-AFL 305
                 677777777555555555554444444444442211111111112232222...13334444444444444458999************.99**9.*** PP

                 --TT-E CS
         APH 192 Dfedag 197
                 Df+++g
  EGE26294.1 306 DFGLMG 311
                 ***987 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.27   1.2e+03       2      23 ..     135     156 ..     134     164 .. 0.83
   2 !   17.2   0.0   6.4e-07    0.0029      60     150 ..     214     308 ..     204     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.27
                 EEEEEETTTEEEEEEEE-S--- CS
        RIO1   2 VyhavsedgkevaiKiyktstt 23 
                 V +av  dg++va+Ki k ++ 
  EGE26294.1 135 VHKAVLADGRQVALKIQKPGVD 156
                 8899999*********997765 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 6.4e-07
                 HHHHHHHHTT--S--EEE..EETTEEEEE--EETTE.EGGBHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  60 rnLkrleeagvpvPkpie..lkrhvlvmefigedgv.aapklkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 + L+++ +++v +Pk+ +    + vlvm+++  + +     + d +  ++ ++++++vl++    +   g  HaDL   N+++ +d ++ ++D++
  EGE26294.1 214 AHLHQVGNTQVTAPKVHHrlSTKKVLVMDLLVGKSLvDESLVWDGTVGKDSKKIMNDVLDTWFLSLMMTGEFHADLHAGNLMLLDDgRIAFLDFG 308
                 6788888999*****986225799*****988444404444445445889999*******99999999************9888887******97 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.45     2e+03      11      33 ..     131     152 ..     125     162 .. 0.81
   2 !   15.9   0.0   1.4e-06    0.0064      29     152 ..     180     317 ..     163     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.45
                 SSEEEEEEEETTTTEEEEEEEEE CS
     Pkinase  11 sfGkVykaveketgkivAvKkik 33 
                 s ++V kav  ++g++vA+K+ k
  EGE26294.1 131 SIAQVHKAV-LADGRQVALKIQK 152
                 568999999.799*******876 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.4e-06
                 EEEEECHCHCHHHHHHHHHHHHHHHHHSC..TTB--EEEEEEE...........SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHH.HHH CS
     Pkinase  29 vKkikkekakkkkekkvlrEikilkklkh..pnivrlyevfee...........kdelylvleyveggeladllerkgslseeeakkiakqileg.ley 113
                 +K  +   + ++++ ++l+E  +l++++h  +++ +l +v ++           +++ +lv++++ g++l d          ++ kki++ +l   +  
  EGE26294.1 180 LKAANLAPIIDEMRARMLAETDFLAESHHidKFLAHLHQVGNTqvtapkvhhrlSTKKVLVMDLLVGKSLVDESLVWDGTVGKDSKKIMNDVLDTwFLS 278
                 677777777778888889999999888843366777777766688888998888888899999999999877665444555678999*****9984445 PP

                 HHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSC CS
     Pkinase 114 lHskgiiHrDlKpeNiLidekgelKitDFGlakelesss 152
                 l   g +H Dl   N+++ ++g +   DFGl  +++ ss
  EGE26294.1 279 LMMTGEFHADLHAGNLMLLDDGRIAFLDFGLMGQIQPSS 317
                 6688899***************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3234.72
//
Query:       EGE26295.1  [L=253]
Description: UBA/THIF-type NAD/FAD binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-58  195.9   2.2    8.3e-58  195.6   2.2    1.0  1  ThiF             ThiF family
    0.00034   20.9   5.9      0.004   17.4   5.9    2.1  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0045   17.4   0.2     0.0089   16.5   0.2    1.4  1  NAD_binding_7    Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.044   13.8   0.4       0.13   12.3   0.3    1.9  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
       0.11   11.7   0.1        0.2   10.8   0.1    1.4  1  Methyltransf_33  Histidine-specific methyltransferase, SAM-de


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   2.2   2.3e-61   8.3e-58       1     240 [.      18     248 ..      18     252 .. 0.93

  Alignments for each domain:
  == domain 1  score: 195.6 bits;  conditional E-value: 2.3e-61
                 THHHHHH..HHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-C CS
                 xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlal..lgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteri 97 
                 y+rq+ l  ++  +q +L++s+  +vG+GglG+++++ L+++G+g+++++D+D++++sNl+Rq+l++  d+Gk+Ka++a++alq+ n +v+++a+t++i
  EGE26295.1  18 YARQILLddWDVTSQIRLKNSHAIIVGMGGLGCPIAQILVRAGIGSIDIIDHDVVDVSNLQRQILYTALDVGKSKAMAAKDALQKQNEWVSITAITDKI 116
                 67898888555599************************************************************************************* PP

                 CGCCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHHHHHCTE-B-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  98 tdetvleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplctsiagnipaiatttavv 196
                 t+++ +++++++ DlV+d++Dn+ +r ++nr c+++++ l+++++ +  gq+  +   +t+cy+C +           +++c s+ g   ++a+t++v+
  EGE26295.1 117 TQTN-TDQFIKHTDLVIDCTDNFLIRDILNRTCHQHKLALLSTSAIAQTGQIALYT-TDTACYQCVFG-----DALGDEMNC-STSG---VLASTVSVI 204
                 **87.79************************************************6.79*******96.....445556777.7788...8******** PP

                 HHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEEECCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 197 aglaalellkllsgkeklenslltqvdllesrfenvelerakks 240
                 + la + +l +l ++ +  ++ l   ++++ ++++++++r++++
  EGE26295.1 205 GALASQVALSFLGKHINPIANELLIWQGEQFQLKKLNICRDEHC 248
                 ************888888888888***************99876 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   5.9   1.1e-06     0.004       3     101 ..      42     160 ..      40     179 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
                      EE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....................TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE CS
  Sacchrp_dh_NADP   3 iiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka.....................lgvrfeaialdaenyeavLaallkegdlvvn 75 
                      i+G G+ G ++a+ l+r +     i ++d +   + +l  ++                     +++ ++++a++ +  +  +++ +k++dlv++
       EGE26295.1  42 IVGMGGLGCPIAQILVRAGIG--SIDIIDHDVVDVSNLQRQIlytaldvgkskamaakdalqkQNEWVSITAITDKITQTNTDQFIKHTDLVID 133
                      556666666666666665533..5555555555555555555555556666666666666666888888888888888888999********** PP

                      -SSGGGHHHHH.HHHHHHT-EEEESS- CS
  Sacchrp_dh_NADP  76 lsppissldvl.kaCietgvhyvdtsi 101
                      ++ +++ +d+l ++C++++ + + ts 
       EGE26295.1 134 CTDNFLIRDILnRTCHQHKLALLSTSA 160
                      *****999998579********99987 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   2.5e-06    0.0089       3      87 ..      33     153 ..      32     164 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.5e-06
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleag.akvtvvapev..keele............................elvklaeeelekd......... 58 
                    ++lk+ + ++vG G ++   ++ l++ag   + +++ +v     ++                            e           +         
     EGE26295.1  33 IRLKNSHAIIVGMGGLGCPIAQILVRAGiGSIDIIDHDVvdV--SNlqrqilytaldvgkskamaakdalqkqnE-----------Wvsitaitdk 115
                    6799************************779*******8552..3344566666666665544444444443331...........1333333334 PP

  NAD_binding_7  59 .........legadlviaatddrelneriaeaakarri 87 
                             ++ +dlvi +td+  +++ + +++++ ++
     EGE26295.1 116 itqtntdqfIKHTDLVIDCTDNFLIRDILNRTCHQHKL 153
                    444445555999*********99999999999985544 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   3.6e-05      0.13       9      59 ..      34      84 ..      28     143 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.6e-05
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkge 59
                  +lk+++++++G G ++  +a+ L+++g+ ++ ++  ++  +++l +++  +
    EGE26295.1 34 RLKNSHAIIVGMGGLGCPIAQILVRAGIGSIDIIDHDVVDVSNLQRQILYT 84
                  58999******************************9999999999988433 PP

>> Methyltransf_33  Histidine-specific methyltransferase, SAM-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   5.6e-05       0.2      63     124 ..      54     115 ..      34     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.6e-05
  Methyltransf_33  63 atlvelGsGsseKtrlLLealeaaekeltYvplDvseeaLeealealaaeypsleveglvgd 124
                      + lv+ G Gs + + +   ++++ ++++ Y +lDv ++   +a +al+++ + ++++++  +
       EGE26295.1  54 QILVRAGIGSIDIIDHDVVDVSNLQRQILYTALDVGKSKAMAAKDALQKQNEWVSITAITDK 115
                      47899999999999888888989999******************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 1974.73
//
Query:       EGE26296.1  [L=295]
Description: protein methyltransferase HemK [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-17   63.1   0.0    5.9e-17   61.7   0.0    1.7  1  MTS              Methyltransferase small domain
    3.9e-16   59.2   0.0    6.2e-16   58.5   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    3.5e-10   40.5   0.0    8.7e-10   39.2   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
    1.6e-08   34.3   0.1    2.9e-08   33.5   0.1    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    1.9e-07   31.0   0.2    2.8e-07   30.5   0.2    1.2  1  Methyltransf_16  Lysine methyltransferase
    7.5e-07   29.8   0.3    4.6e-06   27.3   0.0    2.3  2  Methyltransf_12  Methyltransferase domain
      9e-07   28.7   0.0    2.6e-06   27.2   0.0    1.7  2  Cons_hypoth95    Conserved hypothetical protein 95
    2.6e-06   26.9   0.1    4.9e-06   26.0   0.1    1.4  1  GidB             rRNA small subunit methyltransferase G
    7.7e-06   26.5   0.0    1.6e-05   25.4   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    1.3e-05   25.1   0.0      3e-05   23.9   0.0    1.7  1  Methyltransf_23  Methyltransferase domain
    1.5e-05   25.5   0.1      0.004   17.7   0.0    3.2  3  PrmC_N           PrmC N-terminal domain
    0.00017   21.5   0.1    0.00047   20.1   0.1    1.7  2  Methyltransf_18  Methyltransferase domain
    0.00047   19.6   0.0     0.0046   16.3   0.0    2.0  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0014   18.2   0.0     0.0021   17.6   0.0    1.2  1  DOT1             Histone methylation protein DOT1
      0.003   17.6   0.0     0.0042   17.1   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
     0.0032   16.9   0.0     0.0047   16.3   0.0    1.2  1  Methyltransf_10  RNA methyltransferase
      0.006   16.3   0.0     0.0093   15.7   0.0    1.3  1  UPF0020          Putative RNA methylase family UPF0020
     0.0091   15.2   0.1      0.013   14.7   0.1    1.1  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera
     0.0092   16.5   0.0      0.025   15.1   0.0    1.7  1  Eco57I           Eco57I restriction-modification methylase
  ------ inclusion threshold ------
      0.014   15.0   0.0      0.021   14.4   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
      0.021   14.2   0.0      0.032   13.5   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      0.038   14.0   0.1        0.2   11.6   0.0    1.9  2  Thioredox_DsbH   Protein of unknown function, DUF255
       0.13   11.5   0.0       0.19   10.9   0.0    1.3  1  N6_Mtase         N-6 DNA Methylase
       0.18   11.6   0.0       0.49   10.2   0.0    1.7  2  N6-adenineMlase  Probable N6-adenine methyltransferase


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   7.9e-20   5.9e-17      31     113 ..     129     210 ..     119     253 .. 0.91

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 7.9e-20
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---STTTCHC CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPfhagkat 113
                    ++lDlG+G+G +g++la e + a+v+lvd++ +Al++a++n ++ ++++++++s  l++v+ ++fd+ivsNPP+ +++++
  EGE26296.1 129 NLVNILDLGTGTGCIGITLALELEFAQVVLVDISSEALKVAEQNNHRLNARCQLLQSHWLQKVS-GQFDIIVSNPPYIKENDE 210
                 4457************************************************************.***********9877764 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   8.3e-19   6.2e-16       4     129 ..     130     266 ..     127     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 8.3e-19
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsn............... 81 
                       +++lDlG+GtG +++ la +  + a+vv++Dis ea+++A++n  +l+  ++++ q+ + +  +      +fD+i+sn               
       EGE26296.1 130 LVNILDLGTGTGCIGITLA-LELEFAQVVLVDISSEALKVAEQNNHRLNA-RCQLLQSHWLQkVS-----GQFDIIVSNppyikendehlvnlk 216
                      689****************.55677******************9555555.8*********9444.....89*******999999999998888 PP

  Methyltransf_31  82 .....evl....naladpdkileeiervlkpggilliedprllaelpakveeeskay 129
                           + l    + l+d   i+e    +lk+gg ++ie+        +++e+ +++y
       EGE26296.1 217 hepitA-LvaaeDGLTDIRHIIETGRAYLKDGGLMAIEHGF------DQAEAVRNLY 266
                      866641.267889*************************998......6666666654 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.2e-12   8.7e-10       1      71 [.     133     201 ..     133     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.2e-12
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvss 71 
                      +LdlG+GtG + + la +l+ a+v+ vDis+e+l+ a++++++ +++++++q     l+  +g+fD++vs+
       EGE26296.1 133 ILDLGTGTGCIGITLALELEFAQVVLVDISSEALKVAEQNNHRLNARCQLLQSH--WLQKVSGQFDIIVSN 201
                      8********999999999888********************7766666666665..5677789******95 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.1   3.9e-11   2.9e-08     160     233 ..     128     201 ..     116     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 3.9e-11
        PrmA 160 kegeevlDvGtGSGiLaia.aakLgakkvvavDiDevAvkvakeNael.NkveaklevalseellkeekadvivaN 233
                 k+  ++lD+GtG+G + i  a+ L+ ++vv vDi + A+kva++N ++ N   + l+ +  +++  ++++d+iv+N
  EGE26296.1 128 KNLVNILDLGTGTGCIGITlALELEFAQVVLVDISSEALKVAEQNNHRlNARCQLLQSHWLQKV--SGQFDIIVSN 201
                 333599************85789*******************9876650554445544444444..579******9 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.2   3.7e-10   2.8e-07      39     111 ..     119     191 ..     104     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 3.7e-10
  Methyltransf_16  39 e...lganelsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvkvevLdWgeel 111
                      +    ++++ + +++l+LG GtG +G+++a+ l+ a+v+l D++  +l++ ++n     + l+ + +  + +W +++
       EGE26296.1 119 QqkiRQTDNKNLVNILDLGTGTGCIGITLALELEFAQVVLVDISSeALKVAEQNN----HRLNARCQLLQSHWLQKV 191
                      123478899999******************************9864777777763....457777777777886655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   6.2e-09   4.6e-06       1      72 [.     134     200 ..     134     206 .. 0.80
   2 ?   -0.5   0.0       2.9   2.1e+03      80      98 ..     231     249 ..     219     250 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 6.2e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvva 72 
                      L++G+GtG +   l+ +l++++++ vDis++a+ + +e+ ++   + n++++l + + l++ +g +fD++v+
       EGE26296.1 134 LDLGTGTGCIGITLALELEFAQVVLVDISSEAL-KVAEQNNH---RLNARCQLLQSHWLQKVSG-QFDIIVS 200
                      8********************************.33333333...3346777777777766665.****997 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.9
  Methyltransf_12  80 kdirevldnirklLkpgGr 98 
                       dir +++  r+ Lk+gG 
       EGE26296.1 231 TDIRHIIETGRAYLKDGGL 249
                      799999***********96 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.5   2.6e+03      31      47 ..      19      35 ..      13      37 .. 0.83
   2 !   27.2   0.0   3.5e-09   2.6e-06      43     136 ..     131     215 ..     115     229 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.5
                   HHHHHHCCCHCC-EEEE CS
  Cons_hypoth95 31 alFnilaaeiegarvLD 47
                   a+F  l++++   ++LD
     EGE26296.1 19 AIFKQLQSDVLPMHWLD 35
                   89*******99999*99 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 3.5e-09
                    -EEEETT-TTSHHHHH.HHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHH CS
  Cons_hypoth95  43 arvLDlfaGsGalglE.AlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevlell 136
                     ++LDl  G+G +g+  Al  + +++vlv+ ++ea+k+ ++n ++l+++  ++ l+   l+++      +++fdi+  +PPy ke+   e l  l
     EGE26296.1 131 VNILDLGTGTGCIGITlALELEFAQVVLVDISSEALKVAEQNNHRLNAR--CQLLQSHWLQKV------SGQFDIIVSNPPYIKEND--EHLVNL 215
                    468***********976999***************************55..677665544444......556************986..444444 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   6.6e-09   4.9e-06      25     121 ..     102     200 ..      87     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 6.6e-09
                 -SHHHHHHHCHHHHHHHGGCS-CCC-.....EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-CCCTTTTT-EEEE CS
        GidB  25 kepeellerhlldslsvlellkekrd....kviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklenveivearaeekqeeekydvv 119
                 ++  e+l   +l+ +++ + + + ++    +++D+G+G G+ Gi La+  +  +++L++ ++   +  e+  ++l+    + +++   + +   ++d++
  EGE26296.1 102 RADTEILVEIILNYAKAQQKIRQTDNknlvNILDLGTGTGCIGITLALELEFAQVVLVDISSEALKVAEQNNHRLNAR-CQLLQSHWLQ-KVSGQFDII 198
                 4556777779999999999998887754445******************************99999999999999999.9999998777.799999999 PP

                 EE CS
        GidB 120 ts 121
                 +s
  EGE26296.1 199 VS 200
                 86 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.2e-08   1.6e-05       1      68 [.     134     201 ..     134     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.2e-08
                      EEET-TTSHHHHHHH..HTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaeala..krgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvss 68 
                      Ld+G+GtG +   la    +a+vv vD+s e+lk+a++++++ +   +++    + l+  +++fD++vs+
       EGE26296.1 134 LDLGTGTGCIGITLAleLEFAQVVLVDISSEALKVAEQNNHRLN--ARCQLLQSHWLQKVSGQFDIIVSN 201
                      8*******998888843445*****************9999998..4555555555778889*****997 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.1e-08     3e-05      20      89 ..     127     201 ..     105     276 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4.1e-08
  Methyltransf_23  20 lraggrvLdiGcGtG.i.llevlrengfsvtgvDlspeaveiae......kakkaqkdqfdeqeaaepqgkfdlIvlr 89 
                      ++   ++Ld+G+GtG i  +  l+ ++++v++vD+s+ea + ae      +a+++  +++     ++ +g+fd+Iv++
       EGE26296.1 127 NKNLVNILDLGTGTGcIgITLALELEFAQVVLVDISSEALKVAEqnnhrlNARCQLLQSH---WLQKVSGQFDIIVSN 201
                      44444**********7545666699999**********9999988865554444444444...445577899999886 PP

>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.4e-06     0.004      26      71 .]      38      83 ..      16      83 .. 0.96
   2 ?    2.8   0.0      0.25   1.8e+02       5      36 ..      88     119 ..      87     129 .. 0.85
   3 ?    0.9   0.0      0.97   7.3e+02       7      31 ..     163     189 ..     158     197 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.4e-06
      PrmC_N 26 lahvlglsrsdlllrgerelteeqlerfeelierRaarePlqyIlG 71
                l hvl++    l+++ + + t e+ ++ ++ i +++a++Pl+y++G
  EGE26296.1 38 LMHVLDKPFIFLMTDEDYQPTLEESSKITAGIMQLSAGKPLAYLTG 83
                789******************************************9 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.25
      PrmC_N   5 eaearLkaagieeaeldAelLlahvlglsrsd 36 
                 +++++L  a    +++d e+L++ +l++ +++
  EGE26296.1  88 WGRHFLVNAHTLIPRADTEILVEIILNYAKAQ 119
                 7888999999999**********999998876 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.97
      PrmC_N   7 earLkaagieeaeldA..elLlahvlg 31 
                 +++Lk a+ ++ +l+A  +lL +h l+
  EGE26296.1 163 SEALKVAEQNNHRLNArcQLLQSHWLQ 189
                 689999*99******955566666666 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   6.3e-07   0.00047      17      87 ..     132     199 ..     115     200 .. 0.87
   2 ?   -2.3   0.0         5   3.8e+03      83     111 ..     220     248 ..     212     272 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.3e-07
  Methyltransf_18  17 rvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeeevdtvv 87 
                      +++D Gt  g + i l+ e    +v+ +Di++++l+ a++n ++  l+ ++++  s  l+k++ +++d++v
       EGE26296.1 132 NILDLGTGTGCIGITLALELEFAQVVLVDISSEALKVAEQNNHR--LNARCQLLQSHWLQKVS-GQFDIIV 199
                      799*************************************9866..67799999999999996.6678776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5
  Methyltransf_18  83 vdtvviaGmGgelileILeeakeklkkik 111
                      ++++v a  G + i++I+e+++ +lk+  
       EGE26296.1 220 ITALVAAEDGLTDIRHIIETGRAYLKDGG 248
                      55555555566677777777766666544 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.1e-06    0.0046      43      95 ..     125     176 ..     111     200 .. 0.74
   2 ?    0.8   0.0      0.33   2.5e+02      83     122 ..     235     277 ..     226     283 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.1e-06
                      --S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHH CS
  Ubie_methyltran  43 vavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkee 95 
                      + +k+  ++lD+ +Gtg + ++l+ +++   +vv++Di+++ Lkv+e+  ++ 
       EGE26296.1 125 TDNKNLVNILDLGTGTGCIGITLALELEF-AQVVLVDISSEALKVAEQNNHRL 176
                      34556679************999988764.59**************9976553 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.33
                      HHHHHHHHHHHHHTSSTEEEEE--TTT...-TTS-T-EEEEEE CS
  Ubie_methyltran  83 nmLkvgekklkeegkinieflqanaee...LpfeddsfDvvtv 122
                      +++++g++ lk+ g + ie+   +ae+   L  + +  Dv+t+
       EGE26296.1 235 HIIETGRAYLKDGGLMAIEHGFDQAEAvrnLYLSSGYLDVYTI 277
                      578999999*******999766555541126677888999998 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.9e-06    0.0021      35      96 ..     122     183 ..     110     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.9e-06
                 HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHHHHHHHHHHHHHHHT CS
        DOT1  35 ldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqkeelkkrlklf 96 
                 + +++ k+    +DLG G G + +  ale++ ++ v v+i+ +a ++ae++++ l++r++l+
  EGE26296.1 122 IRQTDNKNLVNILDLGTGTGCIGITLALELEFAQVVLVDISSEALKVAEQNNHRLNARCQLL 183
                 5555555556679**********************************************985 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.7e-06    0.0042      20      80 ..     119     181 ..     104     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.7e-06
  Methyltransf_32  20 l.....akesgaltvvDvGaGkgYLsfvlalkeke.yklkvvgidakeelvekaekraeklgkkfnk 80 
                            +++++ ++++D+G G g  + +lal   e    +vv +d+++e  + ae+ +++l+ +  +
       EGE26296.1 119 QqkirqTDNKNLVNILDLGTGTGCIGITLAL---ElEFAQVVLVDISSEALKVAEQNNHRLNARC-Q 181
                      2333446888899******************...435789********************99555.3 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.2e-06    0.0047      99     193 ..     126     210 ..      99     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.2e-06
                      GTTS--EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--TT-SCCHHSSTTSS-EEEEEE-S---SS-- CS
  Methyltransf_10  99 disaqvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieenerydvtlCnPPfhasla 192
                      d  + v++ld+G+G+ Ci   l  ++   + v  ++++ +l+ a++   +n +l++  +l +     +    l +++ ++d+ + nPP+  + +
       EGE26296.1 126 DNKNLVNILDLGTGTGCIGITLALELEFAQVVLVDISSEALKVAEQ---NNHRLNARCQLLQS----HW---LQKVSGQFDIIVSNPPYIKEND 209
                      3346899*****************999999***********99985...57778776666543....33...5567889*********988776 PP

                      - CS
  Methyltransf_10 193 e 193
                      e
       EGE26296.1 210 E 210
                      6 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-05    0.0093      77     134 ..     154     207 ..     119     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-05
                 --EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE------- CS
     UPF0020  77 lklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGer 134
                 ++++ +D+ +++++ a++N ++ +   +  +s +  +     +g++d+iv+npPY + 
  EGE26296.1 154 AQVVLVDISSEALKVAEQNNHRLNARCQLLQSHWLQK----VSGQFDIIVSNPPYIKE 207
                 568889*************999999888888887554....5589**********775 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.7e-05     0.013      39     101 ..     119     181 ..      98     202 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-05
                 .HHHHHHHH-S-EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHH.HHHTT--G CS
         TRM  39 qlellkkklgekikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeN.vklnevee 101
                 q +++++  ++ +++ld  +++G  +i  alE++   +v++ Dis++A+++ ++N  +ln   +
  EGE26296.1 119 QQKIRQTDNKNLVNILDLGTGTGCIGITLALELEF-AQVVLVDISSEALKVAEQNnHRLNARCQ 181
                 333344444444********************765.566679*********9877255665444 PP

>> Eco57I  Eco57I restriction-modification methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.3e-05     0.025       2      19 ..     194     211 ..     193     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.3e-05
      Eco57I   2 kfdviiGNPPYqeseakk 19 
                 +fd+i+ NPPY+++++++
  EGE26296.1 194 QFDIIVSNPPYIKENDEH 211
                 7************99443 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.8e-05     0.021       4      79 ..     133     202 ..     130     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-05
  Methyltransf_15   4 ilDlfsGaGGnviqfalv..fekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSp 79 
                      ilDl +G+G   i++al+  f +v+ ++i+ e l++a++N +    + + +l +  +++ ++       ++d+++  p
       EGE26296.1 133 ILDLGTGTGCIGITLALEleFAQVVLVDISSEALKVAEQNNHRL--NARCQLLQSHWLQKVSG------QFDIIVSNP 202
                      89999999977777776666******************999877..88888888888886655......234455444 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.3e-05     0.032      49     133 ..     116     200 ..     110     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.3e-05
                 HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-.-EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-G.GG-----SEEEE CS
        CMAS  49 aKldlileklelkpGmtlLdiGcGWGslvrraveryd.vkvvglTlSkeqaklakkrvdeldlerkvevklldy.edldekvdrvvs 133
                 aK +  +++ + k+  ++Ld+G+G G + ++ + + + ++vv + +S+e  k+a+++ ++  l+ + +++ +++ + +++++d +vs
  EGE26296.1 116 AKAQQKIRQTDNKNLVNILDLGTGTGCIGITLALELEfAQVVLVDISSEALKVAEQNNHR--LNARCQLLQSHWlQKVSGQFDIIVS 200
                 556666666666677789*********9887776666489**************997655..568899999999567899******9 PP

>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00027       0.2      67     157 ..      40     128 ..      31     134 .. 0.88
   2 ?   -0.4   0.0       1.3     1e+03      25      53 ..     161     189 ..     154     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00027
  Thioredox_DsbH  67 allnesfvsvkvDreerPdldkiymeavqaltgsggWPlnvfltpdlkpffggtYfpkeeregrpgflevlekiaelweeereeleeeaee 157
                     ++l++ f+ +  D + +P l++    ++ +++ s+g Pl   lt  ++ f+g  ++ ++++      +e+l +i   +++ +++++++ ++
      EGE26296.1  40 HVLDKPFIFLMTDEDYQPTLEESSKITAGIMQLSAGKPLAY-LTG-QQSFWGRHFLVNAHTLIPRADTEILVEIILNYAKAQQKIRQTDNK 128
                     7899***********************************75.554.678********99999999999999999999*9999999988665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
  Thioredox_DsbH  25 wgeealekakeedkpillsiGysachWCh 53 
                      ++eal+ a+++++ +      +++hW +
      EGE26296.1 161 ISSEALKVAEQNNHRLNARCQLLQSHWLQ 189
                     6789*********9999999999999965 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00026      0.19     122     171 ..     191     238 ..     150     253 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
    N6_Mtase 122 kdkkfdvvvaNppfnqkewkektlekderfreavapks.nadlafllhiie 171
                    +fd++v+Npp+ ++  ++++   + +++ ++a    +  l+ + hiie
  EGE26296.1 191 VSGQFDIIVSNPPYIKE--NDEH-LVNLKHEPITALVAaEDGLTDIRHIIE 238
                 6789**********998..4444.444445555333220233445555554 PP

>> N6-adenineMlase  Probable N6-adenine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.5   1.9e+03      89     116 ..      37      64 ..      22     132 .. 0.66
   2 ?   10.2   0.0   0.00066      0.49      82     104 ..     185     210 ..     145     257 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
  N6-adenineMlase  89 fdviviDPPFlseeclkklaktaklllk 116
                      + + v+D PF+   + + ++ t++  +k
       EGE26296.1  37 WLMHVLDKPFIFLMTDEDYQPTLEESSK 64 
                      5666788888555555555555544433 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00066
  N6-adenineMlase  82 p...eelkgkfdviviDPPFlseecl 104
                      +   ++++g+fd+iv  PP++ e+  
       EGE26296.1 185 ShwlQKVSGQFDIIVSNPPYIKENDE 210
                      1344788*************877644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2371.83
//
Query:       EGE26297.1  [L=514]
Description: major facilitator superfamily protein AmpG [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-17   61.1  59.6    2.7e-11   43.0  30.7    2.1  2  MFS_1            Major Facilitator Superfamily
    2.8e-09   36.0  10.0    2.8e-09   36.0  10.0    2.6  2  Acatn            Acetyl-coenzyme A transporter 1


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0  30.7     3e-15   2.7e-11      11     269 ..      33     302 ..      25     335 .. 0.70
   2 !   22.8  22.6   4.1e-09   3.7e-05       5     177 ..     331     504 ..     327     514 .] 0.83

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 3e-15
       MFS_1  11 arsilgpalpl.alaedlg..........ispseigllltl....yalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa......sslw. 86 
                 ++s+    +p+ ++ ++lg          ++++ +++++ +    + ++ +v +lpl  l+  +Grrr +ll++ +l + +l+l++++      + +  
  EGE26297.1  33 GFSA---GIPIlLIFSSLGlwlreagidrATVTMFSWAALGysfkFIWAPLVDALPLPILTRLLGRRRsWLLFTQILVITALVLMAMTnpqsgeA-MLs 127
                 3333...333335556666444444455556666777666644555557777777777777789****888888888888855555744444533.444 PP

       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..........Wravfyilaivsllafvlfllllpee 175
                 +++++ vl G+ +++   ++ a+  + +p + ++   + + +g+ +G+i+  + + +la+ +g          W+ +++i+a+v+ ++++     l+ +
  EGE26297.1 128 IMAAGAVLLGFSSASQDIVIDAYRIESAPADMQPALSATYVMGYRIGMIVSGAGALYLADFFGsmmeaysylaWQKTYLIMAAVMGIGIL---TTLVIS 223
                 9***************************************************************************************88...555555 PP

       MFS_1 176 pperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllpl....ylqevlglsglllaglllallalvgailallagrlsd 269
                 +p+   k+ ++                l+   v   +++++l f ++f g+ + lp     +lq+v+g   ++l+     +++l+++  +l+ ++++ 
  EGE26297.1 224 EPKTVVKPITQT----S-------KNDLRLVVV---FILSVLAFILVFRGMGSILPEtddvLLQFVYGTVRFMLSI---IAFGLASF--GLVQAKIAP 302
                 555555544444....2.......344555554...5666666666888999999996666678888888433333...33333332..336666654 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 4.1e-09
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyal.gaavaslplGrlsdrfGrrrvlllglllfalg.lllll.f.asslwlllvlrvlqGlga 99 
                 ++  +  ++i++ +++ +  +dlg+s+++i  ++ ++++ +++++ +++G+l++++   + + lg++l + + ll+++ f ++++++++++ +   l+a
  EGE26297.1 331 LIGLYRISDIIAGNISNIFYQDLGFSKTQIADAVKVVGVvASIAGGFVGGWLAQKINIIKAMSLGAILACTTnLLFIFlFyTPTVPMMYFAVITDNLAA 429
                 55555567889999999999**********9988887773668888888*******9999************66666653349999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepp 177
                 g++ ++ +a+++++++ +  +  ++l+s+ + l + l  + +g ++++ ++   f +  ++++ +++   l ++++++
  EGE26297.1 430 GLASTVFIAFLSALTSIRFTAVQYALFSSLMTLLPKLIGGYSGSIVDATNYAFFFGFTFVIGIPVLL---LIYLVNKH 504
                 *****************9999999***********55557888888899999999999999999988...55555554 PP

>> Acatn  Acetyl-coenzyme A transporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0  10.0   3.2e-13   2.8e-09       5      90 ..      29     118 ..      26     230 .. 0.83
   2 ?   -2.7   1.4      0.17   1.5e+03     367     432 ..     409     441 ..     324     475 .. 0.53

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 3.2e-13
       Acatn   5 LvvLyllqGiPvGLafgtiPflLkslaketsftelgvfslatyPyslkilWsPivDs....lyskkiGrrrsWiiPvqlv..sgilllvlgl 90 
                 L+ L +  GiP+ L f+++ + L+     +  +++++fs a++ ys+k +W+P+vD+    + ++ +GrrrsW++ +q++  ++++l++++ 
  EGE26297.1  29 LLFLGFSAGIPILLIFSSLGLWLRE--AGIDRATVTMFSWAALGYSFKFIWAPLVDAlplpILTRLLGRRRSWLLFTQILviTALVLMAMTN 118
                 66788899***************99..6788899**********************93333578899********99975115555555544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.17
       Acatn 367 lvgdagvltPWlygflgrllaailgsyvvksfPkdgeitksyfllviiqhllgsflstvqfvgisa 432
                 l                                   ++ + y + vi+ +l + + stv f+++ +
  EGE26297.1 409 LFYTP-------------------------------TVPMMY-FAVITDNLAAGLASTV-FIAFLS 441
                 22222...............................233333.3445555555555554.233222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1090  (0.0607954); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3670.17
//
Query:       EGE26298.1  [L=314]
Description: transcriptional regulator CysB-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-34  117.9   0.0    5.9e-34  117.3   0.0    1.3  1  LysR_substrate  LysR substrate binding domain
    6.5e-15   54.8   0.2    1.1e-14   54.1   0.2    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.01   15.6   0.1      0.021   14.6   0.1    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain
        0.1   12.3   0.0       0.33   10.6   0.0    1.9  2  SBP_bac_11      Bacterial extracellular solute-binding protei


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.0   1.3e-37   5.9e-34       3     208 ..     103     311 ..     101     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.3 bits;  conditional E-value: 1.3e-37
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGG.... CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLar.... 92 
                      ++g+L++++++t ary+lp+++++fr+++ +v l l+++d+e++++++ +g++D++i+++ + + + l++++ ++  +v+++++ h+La+    
      EGE26298.1 103 AQAGTLTVATTHTQARYVLPQIVKEFREKFDKVNLVLQQADPETIAQMVIRGQADIGIATESLlNNAVLRCHRYYDWSHVVIVPKTHELAEfadv 197
                     679******************************************************************************************99 PP

                     SSSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEE CS
  LysR_substrate  93 gepvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvy 187
                      + v+l  La +p +++  g++ r ++++++++ag+ p+++l + + + +   v++GlG++++ ++a ++ +   +lva+p+ +   +++ ++++
      EGE26298.1 198 PDGVDLPTLASYPIVTYHGGFTGRGTIDKVFEKAGFYPDIVLAALDSDVISTYVSSGLGVGIIAEMAYQPKHYP-DLVAIPVNH-FGRFTSWIAV 290
                     9999****************************************************************997666.677799999.7779999999 PP

                     ETTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflreal 208
                     r ++e ++    fi ++++++
      EGE26298.1 291 RDDSEIRKFGHEFIKLCQAQF 311
                     999999988888888888765 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.2   2.4e-18   1.1e-14       1      60 []      16      77 ..      16      77 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 2.4e-18
                HHHHHHHHHHHHHS.SHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSE.EEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeeg.sftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrg.lrLTeaGe 60
                l+ql++  + + +g ++++AAe L++sq+++s+qi++LE++l+++ f+R+g++ + LT+ G+
  EGE26298.1 16 LKQLETVWHTVVNGyNLSQAAELLHTSQSSLSKQIAALENQLKADVFTRQGKRlTGLTPIGR 77
                689999999999999**********************************999989****996 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   4.6e-06     0.021       2      44 ..      19      61 ..      18      70 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.6e-06
                ..HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  2 leTLraylenggnisatAkaLhvHrnTlryRLrrieellgldl 44
                leT+ + + ng n+s++A+ Lh +  +l++ +  +e  l+ d+
  EGE26298.1 19 LETVWHTVVNGYNLSQAAELLHTSQSSLSKQIAALENQLKADV 61
                7999999*****************************9999985 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.4e-05      0.33       7      54 ..     115     162 ..     108     200 .. 0.83
   2 ?   -2.3   0.0      0.66   2.9e+03     155     169 ..     240     254 ..     216     279 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.4e-05
                 SSTHHHHHHHHHHHHHH.H---EEEEESSHHHHHHHHHHH..-SEEEES CS
  SBP_bac_11   7 gslaaalrelaaaFeah.tgvkvevsaggsgklarqiadgarpDvwipa 54 
                 +  + +l +++++F+++  +v+++++ +++ ++a+++++g ++D+ i++
  EGE26298.1 115 TQARYVLPQIVKEFREKfDKVNLVLQQADPETIAQMVIRG-QADIGIAT 162
                 4557899999999955549999999999999999999999.77776655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.66
                 HTTT-SEEEEEHHHH CS
  SBP_bac_11 155 eageadagivyesea 169
                 +a + d++ +y s+ 
  EGE26298.1 240 AALDSDVISTYVSSG 254
                 222333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      715  (0.0398795); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2337.99
//
Query:       EGE26299.1  [L=481]
Description: divalent anion:Na+ symporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-52  177.1  42.2    8.8e-52  176.7  42.2    1.1  1  Na_sulph_symp  Sodium:sulfate symporter transmembrane region
    4.4e-31  108.2  60.1    5.2e-19   68.6  21.7    2.4  3  CitMHS         Citrate transporter


Domain annotation for each model (and alignments):
>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.7  42.2   9.8e-56   8.8e-52       8     461 ..      44     475 ..      35     480 .. 0.84

  Alignments for each domain:
  == domain 1  score: 176.7 bits;  conditional E-value: 9.8e-56
  Na_sulph_symp   8 llllvvlliilllPapdgleskawrllaifiaaivglileplplavialialsllavligvlaakalsevlsgfssdttlLvfaalliaaavektg 103
                    ++++++ +  ++lP     e+ a + la + ++ + + +e++ ++++a++   l  + ig+   ++++++l  f + +++ +f+++ +aa + +  
     EGE26299.1  44 IAAIIAYVLYAFLP----FEPLANKGLALLSFIGILWLTEAIHVTATAILVPLLA-LFIGIPD-FNTKAALTSFANPIIFVFFGGFALAATLHVQK 133
                    33444444444444....5667778889999999*************99865554.4444444.589***************************** PP

  Na_sulph_symp 104 LgkRiAlvlvkivGkrt..liLgyalvladlllapatpsntAraggivfpvikslssafgsepekqserkigaylmltvvqsasitsiaflTamAp 197
                    L+k+iA+ l+   G +    ++    v+a l++++++++++A++ + +   + ++ +      +k   r+   +++l +++sasi++  +l +  p
     EGE26299.1 134 LDKKIAYGLIGLAGGHLgrAVMMMFGVTAALSMWISNTATAAMMLPLAIGLLAQVDA------NK--DRNTFLFVLLGIAYSASIGGLGTLVGSPP 221
                    ***********999776533333445899******************9777766643......33..2445679999******************* PP

  Na_sulph_symp 198 NllllglinsilgveitwasWflaaiptgvillllvplllyvlyppeikkkeeakavaktelkelGpltarekallilfvlllllWifgesln... 290
                    N ++++ +       i + +W+++ +p+ ++l+      +y +  p++ +       ++ + +e  p+t +     i+f+     Wifg++l+   
     EGE26299.1 222 NTIAAKELG------IDFREWMSFGLPMAIVLMPFLIGAMYAILRPNLGQR------VELGTQEAIPMTLPRILTTIIFIATAACWIFGKQLGavl 305
                    **9987665......99***********99975444444444444444444......677888888************************888888 PP

  Na_sulph_symp 291 ...idattvaivvlvillllrvldWkDivkqktaWntllllgglialakllersgliewlgnklttslsglspavaiiiilslfvlvhylfaSatA 383
                         +t++a+++ v +lll +++Wk  ++++t W++l+l+gg+ial+ +++ +g +  lg++++t l   s ++++i ++ +f++  ++f+S+tA
     EGE26299.1 306 gfsNPDTVIALFAAVAVLLLGLVSWK-QISDNTDWGVLMLFGGGIALSDVMKDTGASAVLGESIATFLG-NSSTLLVIFVIAAFIIFLTEFTSNTA 399
                    854568********************.789999***********************************9.66777777778999************ PP

  Na_sulph_symp 384 ttaallpillavaqaipgappllvalllalatslagfllpyatgpnpivfgagylkvkdywrlGfilsiigllillll 461
                      a l+p+++ ++  + g pp+++++ +++  s a f++p+at+pn+i+ g+g +k+kd+ ++Gf l+++ ++i+   
     EGE26299.1 400 SAALLVPLFAPIGVQL-GLPPEVLIMVIGIGASCA-FMMPVATPPNAIIMGSGHVKQKDMMKVGFWLNLVAIVIVTAW 475
                    ****************.******************.**********************************99987654 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.9      0.82   7.3e+03     153     168 ..      40      55 ..      35      61 .. 0.51
   2 !   68.6  21.7   5.8e-23   5.2e-19       2     179 ..      74     262 ..      73     303 .. 0.81
   3 !   52.7  23.1   3.9e-18   3.5e-14      12     165 ..     312     479 ..     292     481 .] 0.79

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 0.82
                 xxxxxxxxxxxxxxxx RF
      CitMHS 153 llalllvgllplvllf 168
                 ++ ++++++++++++f
  EGE26299.1  40 VITVIAAIIAYVLYAF 55 
                 3333333344444444 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 5.8e-23
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
      CitMHS   2 vllileklrldvvallvlvll.vltiee.....alsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvlltallsafvsndg 93 
                 +l+++e+++ +++a+lv +l+ +++i++     al+ +a+pii++++g++ ++a l    l + +a  l+ lagg+    +++++ +ta ls+++sn++
  EGE26299.1  74 ILWLTEAIHVTATAILVPLLAlFIGIPDfntkaALTSFANPIIFVFFGGFALAATLHVQKLDKKIAYGLIGLAGGHLGrAVMMMFGVTAALSMWISNTA 172
                 79**************99999988888888899*******************************************9999******************* PP

                 xxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  94 vvlimipivlslakrlkklppl.....lliplalaaniggaltpiGtpttraaarpglslpnlll.............lalllvgllplvllfmfgval 174
                 ++++m+p+++ l +++  ++ +     +l+ +a++a+igg+ t++G p            pn ++              +l ++++l+ +l++  +   
  EGE26299.1 173 TAAMMLPLAIGLLAQVDANKDRntflfVLLGIAYSASIGGLGTLVGSP------------PNTIAakelgidfrewmsFGLPMAIVLMPFLIG--AMYA 257
                 ************9998777777889999999*****************............999999999999999988444444334444444..2222 PP

                 xxxxx RF
      CitMHS 175 alpvn 179
                  l +n
  EGE26299.1 258 ILRPN 262
                 23333 PP

  == domain 3  score: 52.7 bits;  conditional E-value: 3.9e-18
                 xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  12 dvvallvlvll....vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrdllvllvllta..llsafvsndgvvlimipivls 104
                 +v+al+++v++    +++ +++    ++++++l++g++ ++ ++++tG+   l++ ++ + g++ +llv++v++++  +l+ f sn++ +++++p++ +
  EGE26299.1 312 TVIALFAAVAVlllgLVSWKQISDNTDWGVLMLFGGGIALSDVMKDTGASAVLGESIATFLGNSSTLLVIFVIAAFiiFLTEFTSNTASAALLVPLFAP 410
                 6778877777777899***********************************************99977775555551167889999999********** PP

                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxx.xxxx RF
      CitMHS 105 lakrlkklppl.lliplalaaniggaltpiGtpttraaarpglslpnlll....................lalllvgl.lplv 165
                 ++ +  +lpp  l+++++++a+    ++p+ tp            pn ++                    +a+++v + ++l+
  EGE26299.1 411 IGVQ-LGLPPEvLIMVIGIGASCAF-MMPVATP------------PNAIImgsghvkqkdmmkvgfwlnlVAIVIVTAwAYLF 479
                 ***8.7777777***********99.*******............88888777777777777766555543333332214444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       957  (0.0533772); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3376.45
//
Query:       EGE26300.1  [L=76]
Description: hypothetical protein EA1_05527 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-07   29.7   0.3    6.8e-07   29.3   0.3    1.2  1  Exonuc_VII_S  Exonuclease VII small subunit
     0.0074   16.6   0.7       0.01   16.1   0.7    1.3  1  TBCA          Tubulin binding cofactor A
  ------ inclusion threshold ------
      0.082   11.7   0.2      0.078   11.8   0.2    1.0  1  BRE           Brain and reproductive organ-expressed protein 


Domain annotation for each model (and alignments):
>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.3   1.1e-10   6.8e-07       1      51 [.       9      60 ..       9      61 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.1e-10
  Exonuc_VII_S  1 FEealaeLeeIvekLE.sgelsLeeslklyeeGvkLlkeCekkLdeaeqkve 51
                  F +a++ L+  ++kLE  ++l+++ ++ l+ee  + ++ C+++++++eq ++
    EGE26300.1  9 FKDAYQILQSNADKLEhYDNLDIDNLVTLVEESLAAYRVCQSRIEAVEQALQ 60
                  8899999*********8899*****************************876 PP

>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.7   1.7e-06      0.01      32      81 ..      23      69 ..       7      76 .] 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-06
        TBCA 32 lkadgdedeydlkkqeevleetkamipdlkkrlekavekLeelleeeeel 81
                l+     d+ d+ +  +++ee+ a    +++r+e+  + L++  e++e  
  EGE26300.1 23 LEH---YDNLDIDNLVTLVEESLAAYRVCQSRIEAVEQALQSAFEQAEVA 69
                222...4789**********************************999432 PP

>> BRE  Brain and reproductive organ-expressed protein (BRE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   1.3e-05     0.078      81     137 ..       9      66 ..       3      76 .] 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.3e-05
         BRE  81 ldpdidaLstkvpsLtkWdpnnpeaLlnvlseLlkeykeyqvekla.kegsrlqfeys 137
                 ++   ++L+ +  +L ++d  +++ L+  ++e l  y+  q +  a +++ +  fe  
  EGE26300.1   9 FKDAYQILQSNADKLEHYDNLDIDNLVTLVEESLAAYRVCQSRIEAvEQALQSAFEQA 66 
                 55567889999999************************99976432155566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1238  (0.0690501); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 625.48
//
Query:       EGE26301.1  [L=410]
Description: nicotinate phosphoribosyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-79  267.6   0.0    1.4e-79  267.1   0.0    1.2  1  NAPRTase    Nicotinate phosphoribosyltransferase (NAPRTase) f
    5.7e-33  114.0   1.7    1.1e-32  113.0   1.1    1.9  2  NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N


Domain annotation for each model (and alignments):
>> NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.1   0.0   1.5e-83   1.4e-79       1     239 [.     183     408 ..     183     410 .] 0.99

  Alignments for each domain:
  == domain 1  score: 267.1 bits;  conditional E-value: 1.5e-83
                 GSEEE-TSTTSSSHHHHHHHHHHHHHHHTTTEEEESBHHHHHHHT--B--HHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHCCHIIEEECHCCTH CS
    NAPRTase   1 fklhDFGtRrrsslesqeivvkalkkahlvnflGtdnvlaaakysikaaetsahealgkeqelsafrnnlkqfqkdaldlwvaiekgnlgiaLtdlvlt 99 
                 f ++DFGtRrr+s  +q +vvk l++a + ++ Gt+nv++a++++i++++t+ahe+l+++q+l+    +l+++qk+al+ wv++++g+lgiaLtd+v++
  EGE26301.1 183 FTVADFGTRRRFSKAWQYHVVKSLHEACPFIVRGTSNVYLAKQLGITPIGTMAHEFLQAFQALDV---RLRNSQKAALESWVREYRGDLGIALTDVVGM 278
                 6799*************************************************************...******************************* PP

                 HHHHCCS-CC.HHHSEEEEE-SS-HHHHHHHHHHHHHCTCTTTCCCSEEEEESS-SHHHHHHHHHHHHHTTCEEEEEESHHHHSSECTTCTTTCCEEEE CS
    NAPRTase 100 daflkdfrle.akaylgvRpDSGdpvevieklaahygstlnskgytkrlifsDgldvekiieilealkkkgfniaFGiGtnltqdlnrdtlefavkasa 197
                 dafl+df+l+ ak+++g+R+DSGdp+e+++k++ahy+++ +++++tk+l fsDgl+++k++ +++++k+ ++++ FGiGtnlt+dl +          +
  EGE26301.1 279 DAFLRDFDLYfAKLFDGLRHDSGDPYEWGDKAIAHYHQL-KIDPKTKILTFSDGLTLQKAWDLHQYFKD-KIKTGFGIGTNLTNDLGE---------VQ 366
                 ***************************************.*****************************.******************.........89 PP

                 EEEEEEEEEETTEETTBGGSSCCGSBGSGHHHHHHHHHHCTT CS
    NAPRTase 198 lniviklvevnkdpvakisdrskkgrlgdkefvkllrtvfkn 239
                 lniv klv++n++pvak+sd+++k++++d++++++l++vf+ 
  EGE26301.1 367 LNIVLKLVACNGQPVAKLSDSPGKTMIDDDTYLAYLKQVFEI 408
                 ****************************************86 PP

>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   1.1   1.3e-36   1.1e-32       1     125 []      16     138 ..      16     138 .. 0.97
   2 ?   -2.5   0.0      0.69   6.2e+03      63      84 ..     221     247 ..     190     263 .. 0.63

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 1.3e-36
  NAPRTase_N   1 LdtDlYkltmaqavfkkgpdvevvfelffRkkpfkg..eyaivagleevieylenlrfteeeieyLkrklpyfkedfleyLrtfrfkpsevaveeeevv 97 
                 Ld+DlYk+tm qa+++++p+++ v+++ +R+++++   + +i a le++++yl++l+ft++e++yL+  l+++k+df++yL+ f +k + ++v+++e  
  EGE26301.1  16 LDNDLYKFTMLQAMLHQFPQTHGVYRFRCRNNHETAfaLGEIKADLEQQLDYLCQLKFTQDELDYLR-GLRFIKSDFVDYLELFSLKRRFITVSTDE-- 111
                 89*******************************6657899**************************9.****************************7.. PP

  NAPRTase_N  98 fpgepeirveGpwieaillEtplLaivn 125
                  ++ ++i +eGp+i+a+++E+ +L +v+
  EGE26301.1 112 -NHFLNIDIEGPMIQAMFFEIFVLCLVS 138
                 .99*********************9997 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.69
  NAPRTase_N  63 yLkrklpy.....fkedfleyLrtfrf 84 
                 yL+++l++     + ++fl+ ++ +++
  EGE26301.1 221 YLAKQLGItpigtMAHEFLQAFQALDV 247
                 455455445555566777777764433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3276.52
//
Query:       EGE26302.1  [L=247]
Description: lipoyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0012   18.7   0.0      0.002   18.1   0.0    1.4  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
  ------ inclusion threshold ------
      0.061   13.4   0.0       0.14   12.2   0.0    1.6  1  TT1725         Hypothetical protein TT1725


Domain annotation for each model (and alignments):
>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.2e-07     0.002      18      67 ..      76     124 ..      63     187 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.2e-07
                    GGG--TT-EEEEEEESS-B-B--B-TTSEEEEEEEEESS...-CCGTHHH CS
  BPL_LplA_LipB  18 sselesgglvvvrrqtgGrnvwhspkgeltyslllspeqktfqnrvlely 67 
                    +  l+ + + ++++ +gG+++wh+ ++ + y l+++ +  +f  r+l  +
     EGE26302.1  76 EHILYRTDTPIIQTDRGGQVTWHGDGQLVVYWLFDLHRL-NFGVRDLVSH 124
                    55678888999*************999*******99887.4443333333 PP

>> TT1725  Hypothetical protein TT1725
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.6e-05      0.14      54     109 ..      16      72 ..       6      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
                 --SEEEEEEEE-.SSS---HHHHHHHHHHH.HTTSEEEEEEEEEEETTEESB---BT CS
      TT1725  54 ctdhwrcRfvak.egkkvskeeileLlerlaeagldviktenLyefdgkrgyslgqg 109
                  td+  +R + + + ++v+++ + + l+r+++++++  + ++L+  + ++ y+lgq 
  EGE26302.1  16 STDTLTVRLLDNaDYQTVHESMLNHTLKRIENKKINQHHADELWIVEHQNVYTLGQA 72 
                 689999***9996778889999999******************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1928.58
//
Query:       EGE26303.1  [L=176]
Description: inorganic pyrophosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-46  157.8   0.1    2.4e-46  157.5   0.1    1.1  1  Pyrophosphatase  Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   0.1   1.3e-50   2.4e-46       1     159 [.      20     173 ..      20     174 .. 0.97

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 1.3e-50
                      EEEEE-TTCSEEEEEETTTTEEEEEEE-SSSB-BSSEEEEETT--BTCCBEETSSSEEEEEESSS---TTEEEEEEEEEEEEEEETTEEEEEEE CS
  Pyrophosphatase   1 vvvEiprgsnaKyeidkeegklrldrvlftskgypanYGfipqTledtelkGDgDPlDvlvlgeeplspgevvevkvlGvlamiDegetDdKii 94 
                      vvvEip gsn+K+e++++   + ldrv   ++  p+nYGfipqTl++     DgD lD+l ++e+pl++g  +++kv+Gv++ +D+ge DdK+i
       EGE26303.1  20 VVVEIPTGSNHKIEWNRHLACFELDRVEPIAFAKPCNYGFIPQTLDE-----DGDELDALIITEQPLTTGIFLKAKVIGVMKFVDDGEVDDKVI 108
                      79*********************************************.....****************************************** PP

                      EEETTSGGG.TT-SSGGGSTHHHHHHHHHHHHHTTTTSCCT-.SEEEEEEEEHHHHHHHHHHHHHHH CS
  Pyrophosphatase  95 avpvkdprl.kkindiedlpgllleeiehfFetykdlegkkk.nvkveewkdkeeAekvieeahery 159
                      +vp++d++  + +n+++dlp++l++++e +F++ykdl+ k + ++ ve++ d+++A++vi+e+++r+
       EGE26303.1 109 VVPADDRNNgNAYNSLDDLPPQLIKQLEFHFSHYKDLK-K-PgSTVVEGFFDANTAKEVIKESQKRW 173
                      *******9999***************************.4.5478999******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1417.37
//
Query:       EGE26304.1  [L=368]
Description: chorismate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-135  449.9   0.1     4e-135  449.7   0.1    1.0  1  Chorismate_synt  Chorismate synthase
  ------ inclusion threshold ------
       0.19   12.3   0.0       0.38   11.4   0.0    1.5  1  ChaB             ChaB


Domain annotation for each model (and alignments):
>> Chorismate_synt  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.7   0.1  4.5e-139    4e-135       1     327 []      10     345 ..      10     345 .. 0.97

  Alignments for each domain:
  == domain 1  score: 449.7 bits;  conditional E-value: 4.5e-139
                      SEEEEE-SCCSSEEEEEEE---BT-B--HHHHHHHHHHHTCTSSSSSSHHHCS-EEEEESSEETTEE-SS-EEEEEE-TTS-..SSSSSTSBE- CS
  Chorismate_synt   1 lrvttfGeShgkalgavidgvpagleldeediqkeLdrRrpgqsklttqrkEkDeveilsGvfegktlGtpiallieNkdqrskdyeeikevpR 94 
                      ++vtt+GeShg++l+a++dgvp+gl+ld++d+q eLdrR+pg+sk++tqrkE+D+vei+sGvfeg+t+Gtpi lli N+dq+skdy +i++++R
       EGE26304.1  10 FTVTTCGESHGTGLMAIVDGVPPGLKLDAKDLQCELDRRKPGTSKFATQRKEEDKVEIISGVFEGHTTGTPIGLLIYNTDQKSKDYGNIANTFR 103
                      799******************************************************************************************* PP

                      TTSTCHHHHHHC-S.STHCCCCCTHHCHHHHHHHHHHHHHHHHT.TTEEEEEEEEEETTE.......CHHHHHTT-BS-CCCHHHHHHHHHHHH CS
  Chorismate_synt  95 pgHADltyalkYgirdlrgggrsSaReTaarvaaGavakklLke.lgieivayvssigei.......ekeaenpvrcpdeeaaeemeeaieeak 180
                      p HAD+ty++kYg+rd+rgggrsSaReTa+rvaaGa+akk+Lke lgi i+++v++ig+        +  ++np++c d++a  ++e+++++++
       EGE26304.1 104 PNHADYTYTMKYGFRDYRGGGRSSARETAMRVAAGAIAKKYLKErLGIVIRGHVTQIGTQkahaldwDLVNTNPFFCGDKDAIPRFEALVTSLR 197
                      *******************************************988************766666654444788********************* PP

                      HTT--B-EEEEEEEES--TT-SBTTTB-HHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS--EEEE...SS-TTTTEETTEEBSS-EEEEE CS
  Chorismate_synt 181 kegdslGgvvevvvkgvpaGlGepvfdkldakLakalmsipAvkgveiGsGfeaaelkGseanDeivlr...ktnnaGGieGGisnGepivvrv 271
                      ++g s+G+ +e+++++vp+GlGepvfd+lda++a+a+msi+Avk+veiG+Gf+++++ G+e +De++     + n+aGGi+GGis+G++i v +
       EGE26304.1 198 EQGTSCGAKLEIFAENVPVGLGEPVFDRLDADIAHAMMSINAVKAVEIGDGFDVVAQFGHESRDELT-PdgfTGNHAGGILGGISSGQRIRVAI 290
                      ******************************************************************9.33679********************* PP

                      EE--SS--SSEEEEEBTTS-E-EEEE--S-S-S-THHHHHHHHHHHHHHHHHHHHH CS
  Chorismate_synt 272 avKpipsiakeqktvdletkeevelevkgrhDpcvvpravvvveamvalvladall 327
                      a+Kp++si+++ kt++l++++ v++ +kgrhDpcv +ra++++eam+a+v++d++l
       EGE26304.1 291 ALKPTASITTPGKTINLAGEA-VDVITKGRHDPCVGVRATPIAEAMLAMVILDHYL 345
                      ********************9.*******************************987 PP

>> ChaB  ChaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.2e-05      0.38      10      52 ..     104     147 ..     101     151 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
        ChaB  10 pehAqeifveafnsaleeY.d..desdeerAhrvAwaavkekYekd 52 
                 p+hA  ++   +   +++Y +   +s  e+A+rvA  a+ +kY k+
  EGE26304.1 104 PNHADYTYTMKYG--FRDYrGggRSSARETAMRVAAGAIAKKYLKE 147
                 6677777777774..667765889999****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 3000.76
//
Query:       EGE26305.1  [L=162]
Description: hypothetical protein EA1_05552 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-23   83.6   0.0    1.7e-23   83.3   0.0    1.1  1  UPF0225   UPF0225 domain
    7.1e-08   32.2  25.5    6.6e-06   25.9   7.8    2.4  2  SEC-C     SEC-C motif


Domain annotation for each model (and alignments):
>> UPF0225  UPF0225 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   1.9e-27   1.7e-23       1      98 [.      32     133 ..      32     134 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 1.9e-27
     UPF0225   1 taeaLmRsRysAyvlkdadYlvatthpetreaeeeaeleatakkvkflkleiletekeekedeatVeFkarlkekgkektlhErSrFvre....dgrWl 95 
                 tae LmRsRysA+v++++dY+v+tt p  ++  + a+l+a+a+++ ++ l+i++t+ +  +++a+V+F a+++e g + ++ E S Fv+     ++rW+
  EGE26305.1  32 TAECLMRSRYSAFVIQNIDYIVQTTLPALQPLLDVAALKAWAEQTWWTYLKIISTTPKIGKRHAQVHFCAYFEELGVQGCHNECSAFVKInengQNRWY 130
                 7999***********************************************************************************998888888*** PP

     UPF0225  96 Yvd 98 
                 ++d
  EGE26305.1 131 FLD 133
                 *98 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   9.6   1.6e-05      0.14       3      19 .]       6      22 ..       5      22 .. 0.93
   2 !   25.9   7.8   7.3e-10   6.6e-06       3      19 .]     144     160 ..     143     160 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.6e-05
       SEC-C  3 dpCPCGSGkKYKkCCgp 19
                d CPCGS k Y +CC++
  EGE26305.1  6 DNCPCGSLKCYTHCCHR 22
                78*************86 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 7.3e-10
       SEC-C   3 dpCPCGSGkKYKkCCgp 19 
                 +pC CGSG K+K CCg+
  EGE26305.1 144 QPCLCGSGEKFKVCCGK 160
                 8**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1260.97
//
Query:       EGE26306.1  [L=715]
Description: polyphosphate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-71  238.8   0.3      6e-70  234.1   0.1    2.3  2  PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
    9.6e-65  218.0   0.0    1.5e-64  217.4   0.0    1.3  1  PP_kinase      Polyphosphate kinase middle domain
      1e-64  217.1   0.1    5.1e-64  214.9   0.0    2.0  2  PP_kinase_C    Polyphosphate kinase C-terminal domain 2
    1.5e-33  115.3   0.1    3.1e-33  114.3   0.1    1.6  1  PP_kinase_N    Polyphosphate kinase N-terminal domain
    3.2e-10   40.0   0.2    1.7e-06   28.0   0.1    2.7  2  PLDc_2         PLD-like domain


Domain annotation for each model (and alignments):
>> PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.1   0.1   1.7e-73     6e-70       2     165 ..     364     527 ..     363     529 .. 0.98
   2 ?    2.4   0.0     0.028        99      11      70 ..     534     595 ..     531     597 .. 0.76

  Alignments for each domain:
  == domain 1  score: 234.1 bits;  conditional E-value: 1.7e-73
                    HHHHHHHS-EEEECTTB-SCHHHHHHHHHHC-TTEEEEEEEES-S-S--HHHHHHHHHHHTT-EEEEEES--SSS--HHHHHHHHHHHHHT-EEEE CS
  PP_kinase_C_1   2 ifeairkkdillhhPyesfesvvelleeAaedpkvlaikitlYrvakdskivkaLieAaengkqvtvlvElkArfdeenNiewakkleeagvkvvy 97 
                    +f ai+++d+l+hhP+++f++v++ll +Aa+dp+vlaik+t+Yr + +s+iv+aL++Aa++gk+vt+++El+Arfde++Ni++a+ l+eag+ vvy
     EGE26306.1 364 MFLAISRQDVLVHHPFHTFNPVINLLWQAASDPNVLAIKQTIYRSGVNSEIVQALAAAARSGKEVTAVIELRARFDEASNIAVANMLQEAGAVVVY 459
                    8999******************************************************************************************** PP

                    --TT--B--EEEEEEE---S---EEEEEESS-SS---SS-EEEEEEEE--HHHHHHHHHHHHHHTT-- CS
  PP_kinase_C_1  98 gvvglkvhaklllvvrreeeklrryvhlgtGnynektaklYtDlslltadeelgedveklfnvltgks 165
                    g+vg+k+hak++l+vrre++k+rryvhlgtGny++ +ak YtD++l+ta+ e++edv+ +f++ltg+ 
     EGE26306.1 460 GIVGYKTHAKMMLIVRRENGKIRRYVHLGTGNYHAGNAKAYTDYGLFTANAEVTEDVAGVFQQLTGMG 527
                    ****************************************************************9975 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.028
                    EEEECTTB-SCHHHHHHHHHHC-TTEEE..EEEEES-S-S--HHHHHHHHHHHTT-EEEEEE CS
  PP_kinase_C_1  11 illhhPyesfesvvelleeAaedpkvla..ikitlYrvakdskivkaLieAaengkqvtvlv 70 
                     +lh P+   +++++l+++  ++ k  +    i  +   ++ ki+++L eA  +g q+  +v
     EGE26306.1 534 QILHAPFTLHDTLMRLIDHEIAHVKAGKkgCIIMKFNALTECKIINKLYEASIAGVQIDLIV 595
                    5899************98766655554411445556777899**********9999987766 PP

>> PP_kinase  Polyphosphate kinase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.0   4.1e-68   1.5e-64       1     201 [.     152     350 ..     152     351 .. 0.97

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 4.1e-68
                 HHHHHHHHHHHHTTGGG---EE--TTTS-----TT-EEEEEEEESST-SS-..EEEEEE--TTS-SEEEE-.T.TSS-.EEEEHHHHHHCCHHHH-TTS CS
   PP_kinase   1 eqkefleeyFeeevfpvLtplavdpshpfpflsnkslnlavelrkkekeekekefalvkvPsvlpRfielp.peeegkerfilledvIeanldelFpgy 98 
                 +q+++l++yF ++v pvLtp+ +dp+hpfp l nksln+++ l+ k++ +++ + a+v+ P++lpR+i+lp + ++gke+ ++l  vI+++++elF g+
  EGE26306.1 152 KQRAWLKDYFVSQVKPVLTPISIDPAHPFPRLVNKSLNFIISLEGKDAFGRDINRAIVPAPRSLPRVIRLPdEITDGKEHHVMLSAVIHEHVNELFLGM 250
                 69*********************************************************************85567778******************** PP

                 EEEEEEEEEEE-SSS----.---.-------------------EEEEETT--HHHHCCHTTTT---TTT.EEEE-S--GGGGGCS...--TTTSSS--- CS
   PP_kinase  99 evleaylfrvtRnadleidedeaedlleeiekeLkkRrrgevvRLeveaempeellkfLlkeleldeedvyeidgpldltdlmklvgkdrpeLkyppft 197
                 +v+++y+fr+tRnadl +  d+++d+ +++e eL +Rr+g+ vRLev +++p+++ +fLl+e+eld++++y+++gp++lt+l      drpeLk++pft
  EGE26306.1 251 KVTGCYQFRLTRNADLALA-DDVDDIAKALEGELDNRRFGHEVRLEVTTNCPQDICDFLLDEFELDKSQLYRVNGPVNLTRLLTSF--DRPELKFKPFT 346
                 *******************.*************************************************************97663..9********** PP

                 -B-- CS
   PP_kinase 198 pqtp 201
                 p +p
  EGE26306.1 347 PAMP 350
                 *987 PP

>> PP_kinase_C  Polyphosphate kinase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.26   9.2e+02      40      61 ..     411     432 ..     406     450 .. 0.85
   2 !  214.9   0.0   1.4e-67   5.1e-64       2     160 ..     536     695 ..     535     706 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.26
  PP_kinase_C  40 dkeiidkLyeAsqaGVkikliv 61 
                  ++ei+++L +A++ G +++ ++
   EGE26306.1 411 NSEIVQALAAAARSGKEVTAVI 432
                  67999**********9998776 PP

  == domain 2  score: 214.9 bits;  conditional E-value: 1.4e-67
  PP_kinase_C   2 lvaplnlrekllelidreieaakagkkakiilklNsledkeiidkLyeAsqaGVkiklivrgicclrpgvkglsenikvisivdrfLEhaRiyifeng 99 
                  l ap++l+++l++lid+ei+++kagkk+ ii+k N+l++ +ii+kLyeAs aGV+i+livr+icclrp+v glseni+v+siv+rfLEh+R+y+f+ng
   EGE26306.1 536 LHAPFTLHDTLMRLIDHEIAHVKAGKKGCIIMKFNALTECKIINKLYEASIAGVQIDLIVRSICCLRPQVVGLSENIRVRSIVGRFLEHTRVYYFANG 633
                  679*********************************************************************************************** PP

  PP_kinase_C 100 geeevyisSaDlmtRnldrRvevlvpvedeklkkel.keilelqlkDnvkareldedgeykk 160
                  gee++y sSaDlm+Rnl +Rvev++pv+d+k+ k++ ++ l  +lkD+v+a+el  dg+++ 
   EGE26306.1 634 GEERLYCSSADLMDRNLLHRVEVAFPVLDKKIFKKIyEDGLMNYLKDDVQAWELLGDGKWQP 695
                  **********************************997889******************9986 PP

>> PP_kinase_N  Polyphosphate kinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.1   8.6e-37   3.1e-33       1     106 [.      38     143 ..      38     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 8.6e-37
                  XXXHHHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHCCHHHHH.HTT-..-----------HHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  PP_kinase_N   1 ylnRelSwLkFneRVLeeAedervplleRlkFlaIfssNlDEFfmvRvaslkrqleakvekksedgltpeeqlkaiseeveelveeqekileeellpe 98 
                  y+nR+lS L+F+ RVL++A+++++plleR+ Fl IfssNlDEFf++Rva+l ++++++ + +s dg++p+e l+ is+ ++  v++q++il++e+lp+
   EGE26306.1  38 YINRDLSALRFQLRVLAQAANPNHPLLERMFFLTIFSSNLDEFFEIRVAGLLQKMKQGDQVSSLDGRKPSEILQIISDIAHGAVTQQYQILNDEILPQ 135
                  99********************************************************8999999********************************* PP

                  HHHTTEEE CS
  PP_kinase_N  99 Laeegikl 106
                  Lae++i+ 
   EGE26306.1 136 LAEHEIRY 143
                  *****986 PP

>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   4.7e-10   1.7e-06      21     132 ..     410     523 ..     400     524 .. 0.83
   2 !    9.2   0.0   0.00031       1.1      13     125 ..     565     669 ..     552     672 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 4.7e-10
      PLDc_2  21 sdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgk.......tvivGSsNltkrgldlnlEl 112
                 +++ei++al++aa++g++v  ++      a+  deas+   +++l+eag+ v  +       HaK++li ++       +v +G+ N+ + + ++ ++ 
  EGE26306.1 410 VNSEIVQALAAAARSGKEVTAVIEL---RAR-FDEASNIAVANMLQEAGAVVV-YGIVGYKTHAKMMLIVRRengkirrYVHLGTGNYHAGNAKAYTDY 503
                 6789********************9...444.477889999999888888855.33323678*******7333566666******************** PP

      PLDc_2 113 nvviedkelakeleeeFerl 132
                 ++++ ++e+++ ++  F++l
  EGE26306.1 504 GLFTANAEVTEDVAGVFQQL 523
                 **************999986 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00031
      PLDc_2  13 diatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfet..llgslHaKlylid...gktvivGSsNltkrgl 106
                  i  +   ++ +i+++l++a+  gv++ ++++s      +     + +   + l+++++vr +    l+   H+ +y +    ++ ++  S+ l +r+l
  EGE26306.1 565 IIMKFNALTECKIINKLYEASIAGVQIDLIVRS-----ICCL---RPQ--VVGLSENIRVRSIVGrfLE---HTRVYYFAnggEERLYCSSADLMDRNL 650
                 4444444688899*******************9.....3322...233..3444777888876533344...*******98888899************ PP

      PLDc_2 107 dlnlElnvviedkelakel 125
                  ++ E+++ + dk+++k++
  EGE26306.1 651 LHRVEVAFPVLDKKIFKKI 669
                 ********99999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 5047.79
//
Query:       EGE26307.1  [L=209]
Description: monofunctional biosynthetic peptidoglycan transglycosylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-55  187.0   0.2    2.5e-55  186.7   0.2    1.0  1  Transgly        Transglycosylase
  ------ inclusion threshold ------
      0.044   13.3   0.3       0.09   12.3   0.3    1.5  1  DAPG_hydrolase  DAPG hydrolase PhiG domain


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   0.2   2.8e-59   2.5e-55      12     177 ..      38     203 ..      29     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 186.7 bits;  conditional E-value: 2.8e-59
    Transgly  12 enrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklekklsKdeILea 110
                   + +v++++i+++ k+a +a+ED +F+ h G+d+++i++A+ +n ++g +s GgSTi+qQl+knlfl+++r++ rK++ea++ + +e+ +sK++ILe 
  EGE26307.1  38 VTQIWVDYDHIAKSAKQAAIASEDGKFVAHYGFDFDSIQKAMHRNESQGAVSVGGSTISQQLAKNLFLTSHRSYVRKAEEAIIVVMMETLWSKQRILEV 136
                 56789********************************************************************************************** PP

    Transgly 111 YlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlerm 177
                 YlN++++g+++yGieaA+r+yFg++a++L++++aalL++ll++P++y +  n +++k++++++++rm
  EGE26307.1 137 YLNVAEFGEGIYGIEAASRHYFGRSAANLSRDQAALLISLLPNPKYYGKRPNAKRLKNKQRIIMRRM 203
                 ***********************************************9999***************9 PP

>> DAPG_hydrolase  DAPG hydrolase PhiG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3     1e-05      0.09      50     183 ..      27     167 ..      27     194 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1e-05
  DAPG_hydrolase  50 WfaWhsleseRY.klWhpeaHvdasvsdedrlsde.....slsleerylgnthyvtEdvgegl.ekleirFvdpeelGldeeklk.ekkvaaavc 136
                     ++ Wh l   R+ ++W  ++H++ s+++++ +s++     ++ ++   + +  + +E+ g       +i+ +  ++l+l++++   +k+ +a++ 
      EGE26307.1  27 FMLWHRLSGGRVtQIWVDYDHIAKSAKQAAIASEDgkfvaHYGFDFDSIQKAMHRNESQGAVSvGGSTISQQLAKNLFLTSHRSYvRKAEEAIIV 121
                     578****9999746**********98876655443233324455556677888889999976537889999999*****9998541445556666 PP

  DAPG_hydrolase 137 aevglgeepelklalmvHlvreteg..GlelrSrfwlgervarvaglek 183
                       +++ ++++  l + + ++   eg  G+e  Sr ++g+++a   +l++
      EGE26307.1 122 VMMETLWSKQRILEVYLNVAEFGEGiyGIEAASRHYFGRSAA---NLSR 167
                     777777777766666666666666444***********9992...2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1536.78
//
Query:       EGE26308.1  [L=134]
Description: hypothetical protein EA1_05567 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-06   26.1   0.0    1.1e-05   25.7   0.0    1.2  1  DUF836    Glutaredoxin-like domain (DUF836)


Domain annotation for each model (and alignments):
>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   6.3e-10   1.1e-05       4      57 ..      51     108 ..      49     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.3e-10
                 EEE-TT-HHHHHHHHHHHHHCCCTT..EEEEEEETT..T-CCCHCCCCTTTTEEEECT CS
      DUF836   4 LyskpgChlCeqakekLkelkleeg..leleviDIa..kdeeleakYgleipvlaleg 57 
                 L++++gChlC++++++++ +  +    +   v D a  +de l ++ g+ ip l++++
  EGE26308.1  51 LLGTEGCHLCHNIQAIIEHALAMTAvpIVFRVLDLAdsQDEALIDALGVYIPILLTQD 108
                 99****************966666633666788888555555*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 989.37
//
Query:       EGE26309.1  [L=348]
Description: solanesyl diphosphate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-68  229.5   0.3    4.2e-68  229.2   0.3    1.1  1  polyprenyl_synt  Polyprenyl synthetase
    0.00025   20.7   0.0     0.0004   20.1   0.0    1.3  1  HEPPP_synt_1     Heptaprenyl diphosphate synthase (HEPPP synt
  ------ inclusion threshold ------
       0.18   11.9   0.2        3.2    7.9   0.0    2.3  2  DUF1315          Protein of unknown function (DUF1315)


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.2   0.3   7.1e-72   4.2e-68       3     252 ..      53     296 ..      51     300 .. 0.90

  Alignments for each domain:
  == domain 1  score: 229.2 bits;  conditional E-value: 7.1e-72
                      HHHHHHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   3 lleealeylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllarafe 96 
                      l+  +++++++agGKr+Rpl++ll+a++l+ + e+ ++a +la+i+e+lh+a+LvhDD++D s +RRG+p+a+++++n++A+++gd+l ar+f+
       EGE26309.1  53 LVMSVSKHVIDAGGKRMRPLITLLTARMLH-D-EQSQQAMQLAAITEMLHTATLVHDDVIDASGLRRGKPTANATWDNPTAVLVGDYLIARSFN 144
                      677899************************.3.36799******************************************************** PP

                      HHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt  97 llaklfekslellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeelealkdiglelGlaFQiq 190
                      ll  +  ++l ll+lfs+ +++++eG++l+l++++++++    +++yl+i+  KT+ lf ++++ aall g  +e l++l  +++++G aFQ++
       EGE26309.1 145 LLVGF--NHLPLLKLFSDGTCDIAEGEVLQLQHQHNPKTL---ESDYLQIIDGKTSRLFMMATKGAALLQGR-EEFLDDLGAFAYHFGNAFQMI 232
                      *****..89**********************999888888...9***************************6.6778***************** PP

                      HHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHH...CT-HHHHHHHHHHTTSSHHHHHHHHHH CS
  polyprenyl_synt 191 DDylDlfgdpevlgKpagtDiqegkctlpilkale...laspeqrkvlkeilgkkaekeedvkea 252
                      DD+lD++gd++ +gK++g+D++egk tlpi+k+le   +++p+  ++l+ +++   + ++dv+ +
       EGE26309.1 233 DDVLDFSGDAAIMGKNLGDDLAEGKPTLPIIKTLEfleHSNPAMYDKLRIAVQ-TGKVVDDVQML 296
                      ********************************999555666666666655554.23345555555 PP

>> HEPPP_synt_1  Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.7e-08    0.0004      19     118 ..      74     177 ..      57     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.7e-08
  HEPPP_synt_1  19 llllslleeaeltekekeeyiltamlvqiAldtHdkvsek.k....eeeeeekknrqLtVLAGdyYSglYYklLaevkdielirllaeaikeinehk 110
                    ll + + + e ++++ + +++t ml ++A  +Hd v ++      + + +++ +    VL Gdy  +  ++lL   ++++l++l++++  +i e  
    EGE26309.1  74 TLLTARMLHDEQSQQAMQLAAITEML-HTATLVHDDVIDAsGlrrgKPTANATWDNPTAVLVGDYLIARSFNLLVGFNHLPLLKLFSDGTCDIAEGE 169
                   44555555546666666666777776.67777999987764411113444555667789**********************************9988 PP

  HEPPP_synt_1 111 iklYekke 118
                   +   ++++
    EGE26309.1 170 VLQLQHQH 177
                   86655554 PP

>> DUF1315  Protein of unknown function (DUF1315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.071   4.2e+02      28      48 ..      79      99 ..      77     111 .. 0.82
   2 ?    7.9   0.0   0.00054       3.2       5      26 ..     270     291 ..     267     298 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.071
     DUF1315 28 rklteeQretcmqavmvyeak 48
                r l +eQ + +mq+  + e  
  EGE26309.1 79 RMLHDEQSQQAMQLAAITEML 99
                57999********98776655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00054
     DUF1315   5 asltpevyqrlkqAvElGkWpd 26 
                 +  +p +y++l++Av +Gk  d
  EGE26309.1 270 EHSNPAMYDKLRIAVQTGKVVD 291
                 566799*************776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2661.99
//
Query:       EGE26310.1  [L=365]
Description: phospho-2-dehydro-3-deoxyheptonate aldolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-93  311.0   0.0    6.1e-93  310.7   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.7   0.0   3.4e-97   6.1e-93       9     273 ..      55     350 ..      37     352 .. 0.97

  Alignments for each domain:
  == domain 1  score: 310.7 bits;  conditional E-value: 3.4e-97
                   HHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH.............T-E CS
  DAHP_synth_1   9 adiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel.............glp 92 
                   ++il G d+r+l+++GPCsi+dp aa eyA++lk l+e+lk++l+i+mr+yfeKp r+t g+kGlindpd++ +++i+k+l             glp
    EGE26310.1  55 QNILDGIDKRILIVVGPCSIHDPVAAHEYADKLKVLSEELKNELFIVMRVYFEKP-RTTTGWKGLINDPDMNDSFDIEKGLhiarklllelnekGLP 150
                   689****************************************************.9999************************************* PP

                   EEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEEEEEEES CS
  DAHP_synth_1  93 iatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilcerglrgg 176
                    ate+ldp+++qy+ d++++ +iGArttesq+++e+ sgls+pvg+Kngtd    va+++m+a++  + flg          + kg+ + ++ lrgg
    EGE26310.1 151 CATEALDPNTPQYMQDLISWSAIGARTTESQTHREMSSGLSCPVGFKNGTDgsmtVAVNAMQAVQSGHSFLGLsgdgqvsiiKSKGNRYAHVVLRGG 247
                   ************************************************************************************************* PP

                   T.SSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SST.GGGGBBCTCBHHHHHHHH CS
  DAHP_synth_1 177 k.ktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsd.gkqalkygksetdacilk 267
                   + k+n+d   vaa++ ++ + +   ++m+D+sHans kd   q+ v++ ++++i++G   i G+miEshl+ g+++++ +   l+ygks+td c+ +
    EGE26310.1 248 NdKPNYDETAVAAAENELAKGKTNgKIMIDASHANSGKDPYLQPMVIQNVASQIQNGnssIMGLMIESHLKGGRQNIPvNLDDLEYGKSVTDGCLDW 344
                   *****************99996559*****************************************************999**************** PP

                   HHHHHH CS
  DAHP_synth_1 268 eltell 273
                   e t+++
    EGE26310.1 345 EATVET 350
                   *99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2884.72
//
Query:       EGE26311.1  [L=234]
Description: Smr protein/MutS2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-19   70.1   0.1    3.8e-19   68.8   0.1    1.7  1  Smr       Smr domain


Domain annotation for each model (and alignments):
>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.1   2.1e-23   3.8e-19       1      80 []     153     229 ..     153     229 .. 0.99

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 2.1e-23
                 EE-TT--HHHHHHHHHHHHHHHHHTT-SEEEEE--STTSTTHCHHHHHHHHHHHCSTTEEEEEE--CCCTGGGEEEEEE- CS
         Smr   1 lDLhglrraealnvletfldaasakglrsvevihGkGahagvgvLrpavmgwLagkeaveafreaekkeGgkGavvVlLk 80 
                 +DLhg + ++a++++   + +a+++g + v+++hGkG+    ++L+ +v+gwL++ ++v af +a++k+Gg+G v+VlLk
  EGE26311.1 153 VDLHGSSIDDARKAVLLLISQAINHGETVVKIVHGKGK---DAILKTCVNGWLRQMPEVMAFVSAPAKDGGNGSVLVLLK 229
                 8*************************************...79***********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1767.17
//
Query:       EGE26312.1  [L=426]
Description: lipid A disaccharide synthase LpxB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-98  329.7   0.6    4.7e-98  328.5   0.6    1.6  1  LpxB      Lipid-A-disaccharide synthetase


Domain annotation for each model (and alignments):
>> LpxB  Lipid-A-disaccharide synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.5   0.6  2.6e-102   4.7e-98       1     358 [.       9     394 ..       9     408 .. 0.84

  Alignments for each domain:
  == domain 1  score: 328.5 bits;  conditional E-value: 2.6e-102
                 EEEEE-SHHHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHTT-EEEEEGGGH------------HHHHHHHHHHHHHHHHH--SEEEEES-HHHHHHHH CS
        LpxB   1 iflsagevSgdllgaelikelkeeypelefvGvggekmeaeglealaemeeisvvGlievlkkllkllkirkkvvknllkkkadlliliDapdfnlrla 99 
                 i ++agevSgd+lg++ ++++++  p+++ vGvgg  m+a+gl ++++m  +sv+Gl+ev+ +l+ llk++k+++  ++++++dl+i+iDapdfnlr+ 
  EGE26312.1   9 IGIVAGEVSGDALGGDFMQKMNALHPNIRWVGVGGRSMAAQGLSSVIDMGRLSVMGLAEVMMHLPDLLKAKKQIITAFKTHQIDLFIGIDAPDFNLRIG 107
                 569************************************************************************************************ PP

                 HHHHHTT--..EEEES--TTT--SHHHHHHHHHH-SEEEESSHHHHHHHHHTT--EEE---HHHHHS-SS--..HHHHHHHHT...........--TTS CS
        LpxB 100 kklrkqgikkkiiyyvsPsvWawkpkrakkiakytdlllaiLPfEkefyqkkgldvryvGHplldaikkekk..eakakellg...........idede 185
                 k l+ qg+    + yvsPs+Waw++ r+++i+++tdl+l ++PfE  +yqk++ +++ vGHpll+++  +++  +   +++++           + ++ 
  EGE26312.1 108 KILKPQGVF--CVQYVSPSIWAWREGRIHHIKAATDLVLCLFPFELGVYQKYAHPAVCVGHPLLNKLHAHQDspKVRLENFIHqyhnhhhsvtsLTKAS 204
                 *********..8*****************************************************9876655234444444331111111222277788 PP

                 -EEEEE--SSHHHHHHHHHHHHHHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHH-TT-...--EEEES-..........HHHHHHH-SEEEESSTT CS
        LpxB 186 rvlallpgsRkseirrllksllkaaqqlkkqlenlkllvplvnkkyeeqileikaeenldv...qllllsge..........alealaaadlaliksGT 271
                 ++++l+ gsR seir +l+ ll  aq++++q++++++++p+v++k+ +++ ei++  + ++    ++l +++          ++ ++  +d+ l++sGT
  EGE26312.1 205 HIICLMAGSRTSEIRAMLPLLLTSAQNIHQQIPTVQFVLPVVSAKHARLVHEILHTHHANLvncVHILDDHNrsqkqnqpaiSHACMTISDVVLLASGT 303
                 9**********************************************998888766554431112333222211112223335789************* PP

                 HHHHHHHTT--EEE-----HHHHHHHHHHHHHS--SHHHHHHTS-....SS----GGG-SHHHHHHHHHHHHTTS...HHHHHHHHHHHHH CS
        LpxB 272 aaLEaalaktPmvvayrvkpltfflakrlvkikyvslvNillnre....ivpeliqeesdaqleaaallllleneekakkekdkekkfeel 358
                 a+LE+ l++ Pmvv y+v+pltf++akrlvki+yvsl+Nil+++     ivpel+q +++a++ ++++l  +   +k+ k+  +      +
  EGE26312.1 304 ATLECLLLERPMVVVYQVNPLTFMIAKRLVKIPYVSLPNILAKQYlghpIVPELLQSDATAEKVSTKALGIIHHPNKQTKQLSNISAWLRS 394
                 *****************************************875423339**********************9998877776655544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3255.64
//
Query:       EGE26313.1  [L=248]
Description: ribonuclease HII [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-34  119.9   0.0    1.6e-34  119.5   0.0    1.1  1  RNase_HII  Ribonuclease HII


Domain annotation for each model (and alignments):
>> RNase_HII  Ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   8.7e-39   1.6e-34       1     196 [.      30     230 ..      30     232 .. 0.83

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 8.7e-39
                 EEEEEE-TT-SBS-EEEEEEEECGHHHH.....HHHCTT...GTTGTTS-HHHHHHHHHHHHSEEEEEEE-HHHHH.HHTTTS-HHHHHHHHHHHHHHH CS
   RNase_HII   1 iGiDEaGrGpvlGplvvaavavekeree.....elkklg...vkDSKkLskqkreeLaklikkkiekrklvaeeikyaseneinlneikaaltlavikl 91 
                 +GiDE+GrG+++G ++v av++++e         l++ +   ++DSKkLs+++re+L+ +i      + +  + i+  ++  i++++i +a++l ++ +
  EGE26313.1  30 VGIDEVGRGALFGNMTVGAVILPNELSGrfdeiDLTNTKislLNDSKKLSEKRREQLFDIIT-----DLALDYAIVDVPSTIIDQINIYQATMLGMKIA 123
                 6**********************986542223333333322379******************.....77788888889999999999999988776544 PP

                 HH....HT..CEECCECCCE--SSHHHHHHHHHHHHCCEEEEETTGGGT-HHHHHHHHHHHHHHH.HHHHHHHHHCS.H.--TTSSTTSHHHHHHHHHH CS
   RNase_HII  92 le....kl..gvkvdeilvdgvttpeslkkkleqiikikvtvekkadekyllvaaASiiAkverd.eelellkrkpg.tldkgsGyasdektrallkkg 182
                 +e    k+  + k + il+dg++ p  ++  l +++  ++++  k+d+++  +a ASi+Akv rd ++++ +k  p+  ldk++Gy ++++ +a+l++g
  EGE26313.1 124 IEtiiiKNnlNEKNTTILIDGNQLPS-MDGSLGEHFH-QIYAMIKGDATHSSIACASILAKVHRDrLMIQHAKSYPEyLLDKHKGYLTAKHKAAILEYG 220
                 4311114412555669****999887.**********.9************************************************************ PP

                 HHHS--TTB-TTSH CS
   RNase_HII 183 atsklpdivrlsfk 196
                 + +     +r+sf 
  EGE26313.1 221 ILP----EHRRSFS 230
                 **9....8888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2108.13
//
Query:       EGE26314.1  [L=472]
Description: GTP-binding protein EngA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-53  178.1   0.3    4.5e-26   91.2   0.0    2.3  2  MMR_HSR1         50S ribosome-binding GTPase
    2.1e-31  108.6   0.0      9e-16   57.8   0.0    2.2  2  FeoB_N           Ferrous iron transport protein B
    1.2e-28   99.2   0.0    7.2e-28   96.7   0.0    2.1  2  KH_dom-like      KH-domain-like of EngA bacterial GTPase enzy
      3e-20   72.6   0.9    1.9e-07   30.8   0.1    4.9  5  GTP_EFTU         Elongation factor Tu GTP binding domain
      1e-10   41.9   0.4      0.022   14.9   0.0    4.4  4  Dynamin_N        Dynamin family
    7.5e-10   39.0   0.0      0.002   18.0   0.0    3.9  3  RsgA_GTPase      RsgA GTPase
    3.3e-08   33.1   0.0     0.0028   17.0   0.0    2.3  2  AIG1             AIG1 family
    1.1e-06   28.5   0.2      0.012   15.3   0.0    2.7  2  AAA_24           AAA domain
    1.3e-06   28.6   0.5       0.13   12.4   0.0    3.8  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    2.8e-06   27.0   0.1      0.021   14.4   0.0    2.9  2  Ras              Ras family
    5.5e-06   26.6   0.1       0.12   12.6   0.0    2.4  2  Nuc_deoxyri_tr2  Nucleoside 2-deoxyribosyltransferase like
    7.1e-05   23.3   0.0       0.52   10.8   0.0    2.6  2  ABC_tran         ABC transporter
    8.7e-05   22.8   0.0       0.39   11.0   0.0    3.0  2  AAA_22           AAA domain
    0.00013   21.6   3.4        0.7    9.5   0.0    4.1  4  cobW             CobW/HypB/UreG, nucleotide-binding domain
    0.00036   21.1   0.0       0.41   11.2   0.0    2.5  2  AAA_18           AAA domain
    0.00064   19.2   0.1       0.26   10.7   0.0    2.7  2  TniB             Bacterial TniB protein
    0.00094   18.7   0.1       0.28   10.6   0.0    2.5  2  SRPRB            Signal recognition particle receptor beta su
     0.0012   18.3   0.8        1.5    8.2   0.0    3.6  3  Arf              ADP-ribosylation factor family
     0.0024   18.2   0.0        3.4    8.1   0.0    2.9  2  RNA_helicase     RNA helicase
     0.0025   18.2   0.0        2.1    8.7   0.0    3.0  2  AAA_16           AAA ATPase domain
     0.0029   17.4   0.0        4.1    7.1   0.0    4.2  4  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.003   16.6   0.0        1.8    7.5   0.0    3.0  3  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0032   17.2   0.1         21    4.8   0.0    3.9  4  PduV-EutP        Ethanolamine utilisation - propanediol utili
     0.0037   17.2   0.1        3.2    7.7   0.0    2.9  2  NTPase_1         NTPase
     0.0044   16.7   0.0        3.3    7.5   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
     0.0047   17.0   0.0          4    7.5   0.0    2.4  2  AAA_14           AAA domain
     0.0052   16.0   0.0        1.6    7.9   0.0    2.5  2  NB-ARC           NB-ARC domain
     0.0087   16.3   0.0        5.6    7.2   0.0    2.5  2  AAA_28           AAA domain
     0.0087   16.5   0.0          4    7.9   0.0    2.7  2  AAA              ATPase family associated with various cellul
  ------ inclusion threshold ------
       0.01   16.0   0.0        6.8    6.9   0.0    2.5  2  AAA_33           AAA domain
      0.012   15.6   0.0       0.72    9.7   0.0    2.6  3  Ploopntkinase3   P-loop Nucleotide Kinase3
      0.025   14.2   0.7        0.6    9.7   0.0    2.6  3  SRP54            SRP54-type protein, GTPase domain
      0.044   13.0   0.0        3.1    7.0   0.0    2.6  2  Septin           Septin
      0.045   13.2   0.0        1.1    8.6   0.0    2.2  2  KTI12            Chromatin associated protein KTI12
      0.062   12.3   0.3       0.11   11.5   0.3    1.3  1  YopD             YopD protein
       0.11   12.4   0.0         14    5.6   0.0    2.7  2  MobB             Molybdopterin guanine dinucleotide synthesis
       0.11   11.6   0.0        2.3    7.3   0.0    2.5  2  DAP3             Mitochondrial ribosomal death-associated pro
       0.36   10.5   2.1         11    5.6   0.0    2.5  3  AAA_15           AAA ATPase domain
       0.39   10.3   1.7         22    4.5   0.0    3.3  3  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   9.7e-29   4.5e-26       2     114 .]       7     124 ..       6     124 .. 0.90
   2 !   85.1   0.1   7.4e-27   3.4e-24       2     114 .]     182     299 ..     181     299 .. 0.87

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 9.7e-29
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS.S.....HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGli.e.....gaseekglgkaflaleeadlillvvdaseeklkpl 93 
                 va++GrpNvGKStL+n+lt++ +a v+d +g Trd ++g  ++++k++++vDt G i e     g+ ++ + ++++ a+ ead++++vvda+ ++l   
  EGE26314.1   7 VALIGRPNVGKSTLFNQLTKSrQALVADLAGLTRDRQYGDAHFENKSFIVVDTGG-IgEmddgsGNIDDYMATQSYTAIHEADIVVFVVDAR-AGLIGA 103
                 89******************9789*******************9***********.532444545666669*******************99.668899 PP

                 HHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  94 deeleelleeakkplilvlnk 114
                 d+e++ +l+  +kp++lv+nk
  EGE26314.1 104 DSEIAHFLHTLGKPVFLVANK 124
                 9*******************8 PP

  == domain 2  score: 85.1 bits;  conditional E-value: 7.4e-27
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGC.....SSHHHHHH.HHHHHHHHHHCTSEEEEEEETTTTCSHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGl.....iegaseek.glgkaflaleeadlillvvdaseeklkpl 93 
                  ai+GrpNvGKStL+n+l+ge ++ v d+pgtTrd +++ ++ +g++++l+Dt+G+     i+ ++ ek ++ k+++a+++a++++lv+da+ e++ ++
  EGE26314.1 182 LAIIGRPNVGKSTLVNRLLGEdRVVVFDMPGTTRDSIYIPFEREGRSYVLIDTAGVrrrgrID-EKVEKfSVVKTLQAIKDANVVVLVIDAK-EGIVDQ 278
                 79******************9899******************999**********54433334.444445********************88.779888 PP

                 HHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  94 deeleelleeakkplilvlnk 114
                 d ++  +  +a++ +++++nk
  EGE26314.1 279 DLHMLGYALDAGRAIVVAINK 299
                 888888888899999999998 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0     2e-18     9e-16       3     121 ..       7     131 ..       5     135 .. 0.87
   2 !   48.7   0.0   1.2e-15   5.5e-13       2     135 ..     181     320 ..     180     345 .. 0.78

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2e-18
                 EEEEESTTSSHHHHHHHHHTTSEE.EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS..HHHH.HHHHHHHCTSSSEEEEEEEGGG..HHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqk.vgNwpGvtvekkegklklkgkeveivDlPGiYslsays..eeek.vardflleeepdvvvnvvdatn..lernL 95 
                 val+G pnvGk+tlfn+lt+++q  v+  +G t +++ g  ++++k++ +vD  Gi ++++ s  +++   ++++ + +e+d+vv vvda    +  + 
  EGE26314.1   7 VALIGRPNVGKSTLFNQLTKSRQAlVADLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMDDGSgnIDDYmATQSYTAIHEADIVVFVVDARAglIGADS 105
                 89*******************98659*********************************76553345550566788899**********9854478888 PP

                 HHHHHHHHTTSSEEEEEETHHHHHHT CS
      FeoB_N  96 yLtlqllelgvpvvlalnmideaekk 121
                  +   l  lg+pv l+ n++d ++++
  EGE26314.1 106 EIAHFLHTLGKPVFLVANKMDGVHEA 131
                 999999999***********988765 PP

  == domain 2  score: 48.7 bits;  conditional E-value: 1.2e-15
                 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSS...SSSSHHHHHHHHHHHCTSSSEEEEEEEGGG..HHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYsl...sayseeekvardflleeepdvvvnvvdatn..lern 94 
                 ++a++G pnvGk+tl+n+l g +   v   pG+t +     ++ +g+++ ++D  G+      ++  e  +v++++ + ++++vvv v+da++  ++++
  EGE26314.1 181 KLAIIGRPNVGKSTLVNRLLGEDrVVVFDMPGTTRDSIYIPFEREGRSYVLIDTAGVRRRgriDEKVEKFSVVKTLQAIKDANVVVLVIDAKEgiVDQD 279
                 689****************9987256679****************************7541115555555566666667899*********97669*** PP

                 HHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT CS
      FeoB_N  95 LyLtlqllelgvpvvlalnmideaekkgieidlkkLsekLg 135
                 L+++   l+ g  +v+a+n++d +++++ +  + +++++++
  EGE26314.1 280 LHMLGYALDAGRAIVVAINKWDGLSQDQKDFVKIEIDRRFN 320
                 **********************9998887666666666655 PP

>> KH_dom-like  KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       3.8   1.8e+03      42      70 ..     293     321 ..     292     329 .. 0.91
   2 !   96.7   0.0   1.6e-30   7.2e-28       1      80 []     355     435 ..     355     435 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 3.8
                  EEEEECSCCCS-HHHHHHHHHHHHHHCT- CS
  KH_dom-like  42 fvlfvndpelvkesykryLenqlreafgf 70 
                  +v+ +n+ + ++++ k +++ ++ ++f+f
   EGE26314.1 293 IVVAINKWDGLSQDQKDFVKIEIDRRFNF 321
                  78999999*******************99 PP

  == domain 2  score: 96.7 bits;  conditional E-value: 1.6e-30
                  ---HHHHHHHHHHHHCCS--SET.TCC-EEEEEEEEETTTTEEEEEECSCCCS-HHHHHHHHHHHHHHCT-TTS--EEEEE CS
  KH_dom-like   1 RistseLnrvleeavekhpppvk.gkrlkiyyatqvgtrpptfvlfvndpelvkesykryLenqlreafgfegtPirlkfR 80 
                  ++st++L+r+le+av++hppp+  g+r+k++ya+ +g++pp +v+++n+++++++sy+ryLen +r+ +++egtP++++f+
   EGE26314.1 355 KVSTNQLTRILEDAVASHPPPMVgGRRIKLRYAHLGGHNPPVIVIHGNQTSSLPKSYQRYLENVFRNVYKLEGTPLQVEFK 435
                  79*******************555*******************************************************98 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.041        19       6      28 ..       7      29 ..       4      61 .. 0.87
   2 !   23.0   0.0     1e-07   4.7e-05      86     137 ..      79     130 ..      66     140 .. 0.86
   3 ?   -2.8   0.0       8.2   3.8e+03     172     192 ..     146     166 ..     141     168 .. 0.77
   4 !    8.1   0.0    0.0039       1.8       3      24 ..     179     200 ..     177     207 .. 0.87
   5 !   30.8   0.1   4.1e-10   1.9e-07      55     185 ..     214     342 ..     209     370 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.041
                EEEEESTTSSHHHHHHHHHHHTT CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlyktg 28
                +++ig  + GK+TL  +L+++ +
  EGE26314.1  7 VALIGRPNVGKSTLFNQLTKSRQ 29
                688999************98765 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1e-07
                 HHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHH CS
    GTP_EFTU  86 evirglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlka 137
                 + ++++  +D++v+vvda+ G      e+++ + ++g p++++ NKmD +++
  EGE26314.1  79 QSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKMDGVHE 130
                 4578899*****************************************9943 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 8.2
                 EEBTTTTBTHHHHHHHHHHHS CS
    GTP_EFTU 172 fgSalkgegvktllealvell 192
                  ++a +g gv++lle l+  +
  EGE26314.1 146 ATAASHGRGVTNLLESLTADM 166
                 578889999999999887655 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0039
                 EEEEEEEESTTSSHHHHHHHHH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLl 24 
                 +++++iig  + GK+TL+ rLl
  EGE26314.1 179 TLKLAIIGRPNVGKSTLVNRLL 200
                 57899****************8 PP

  == domain 5  score: 30.8 bits;  conditional E-value: 4.1e-10
                 CSSCEEEEEETTCSSEEEEEEEESS..........SGGGH.HHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHH CS
    GTP_EFTU  55 TiksaaisleketkkylinliDtPG..........HvdFs.kevirglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl.kaelke 141
                 T +s  i +e   + + + liDt G           ++Fs  ++ ++++ ++++vlv+da+eG+  q   +l  al+ g  i+v+iNK D l +++ + 
  EGE26314.1 214 TRDSIYIPFE--REGRSYVLIDTAGvrrrgridekVEKFSvVKTLQAIKDANVVVLVIDAKEGIVDQDLHMLGYALDAGRAIVVAINKWDGLsQDQKDF 310
                 5666666666..777777777777733333222221356524788999********************************************6555555 PP

                 HHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHH CS
    GTP_EFTU 142 iveevkqklsrkeeklekygekgekevpvvfgSalkgegvktll 185
                 ++ e+ +++           +     v++  +Sal g gv +l 
  EGE26314.1 311 VKIEIDRRF----------NFVP--WVKIHLISALYGNGVGKLY 342
                 666777777..........2222..3445666666666665554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.013       6.2       1      22 [.       7      28 ..       7      40 .. 0.89
   2 !    8.0   0.0    0.0059       2.7      98     167 ..      49     124 ..      42     125 .. 0.77
   3 !   14.9   0.0   4.7e-05     0.022       1      32 [.     182     213 ..     182     227 .. 0.80
   4 ?    7.2   0.0      0.01       4.7     102     160 ..     228     293 ..     217     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.013
                EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlged 22
                +a++G  + GKS++ n+L++++
  EGE26314.1  7 VALIGRPNVGKSTLFNQLTKSR 28
                799***************9865 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0059
                 TTS-SEEEEE---B-SSSGTTS.......HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  98 llvkgltlvDlPGldsvnkrdq.......elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 + +k   +vD+ G+ +++++             ++i++adi+++v++a   l  ++ +++a+ +   gk ++ v +k
  EGE26314.1  49 FENKSFIVVDTGGIGEMDDGSGniddymaTQSYTAIHEADIVVFVVDARAGLIGAD-SEIAHFLHTLGKPVFLVANK 124
                 566777899999999999998889998555555567*************9988555.45777777777777777776 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 4.7e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS-- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptT 32 
                 +a++G  + GKS+++n Llged  ++   p T
  EGE26314.1 182 LAIIGRPNVGKSTLVNRLLGEDRVVVFDMPGT 213
                 589******************97776666544 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.01
                 SEEEEE---B-SSSGTTS.......HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTT CS
   Dynamin_N 102 gltlvDlPGldsvnkrdq.......elvkeyikkadiilavtsanhdlsnsealflarevdpkgkr 160
                  ++l+D+ G+ ++   d+         + ++ik+a+++++v +a+  + +++   l  ++d     
  EGE26314.1 228 SYVLIDTAGVRRRGRIDEkvekfsvVKTLQAIKDANVVVLVIDAKEGIVDQDLHMLGYALDAGRAI 293
                 678*********98888889999655566789**************99999988777776665555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00015      0.07     101     131 ..       6      36 ..       3      66 .. 0.73
   2 !   18.0   0.0   4.4e-06     0.002      49     163 ..     118     239 ..      89     242 .. 0.66
   3 ?    2.9   0.0      0.19        88      20      64 ..     264     309 ..     247     354 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00015
                  EEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevs 131
                  +++l+G   vGKStL n+l+ + ++ ++++ 
   EGE26314.1   6 VVALIGRPNVGKSTLFNQLTKSRQALVADLA 36 
                  6899****************99888777765 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 4.4e-06
                  EEEEEE-GGG--HHH...........HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSE..EEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  49 pvivlnKiDlleeee...........eleelkeelealgyevllvsaktkegleelkellkdkt..svlvGqSGvGKStLinallpelelktgevsek 133
                  + +v nK+D ++e+             +    ++ +  g++ ll s +     +  k++l++kt   +++G   vGKStL+n+ll+e+++ + ++   
   EGE26314.1 118 VFLVANKMDGVHEAAyaeffalgfgePYA--TAASHGRGVTNLLESLTADMPEDMPKDELDSKTlkLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPG- 212
                  56666666666666666665554432222..222233334444444443344444456666655225789*****************8888877765. PP

                  ---------SEEEEEETTTE...EEESS-SSSS CS
  RsgA_GTPase 134 lgrGkhTTtavellelaegg...lliDtPGfre 163
                        TT+ +  ++++++g   +liDt G+r+
   EGE26314.1 213 ------TTRDSIYIPFEREGrsyVLIDTAGVRR 239
                  ......899999999888554446889988875 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.19
                  EEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.H CS
  RsgA_GTPase  20 livvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeee.e 64 
                  ++v+ ++ +e  +++   +L  a ++g  +v+++nK D l++++ +
   EGE26314.1 264 VVVLVIDAKEGIVDQDLHMLGYALDAGRAIVVAINKWDGLSQDQkD 309
                  45555554444444445688889999999*********99998832 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   5.7e-05     0.026       4     101 ..       8     105 ..       6     118 .. 0.83
   2 !   17.0   0.0   6.1e-06    0.0028       2     100 ..     181     279 ..     180     314 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.7e-05
                 EEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETT.B-SHHHH CS
        AIG1   4 vlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslg.rfteede 101
                  l+G+  +GkS+  N + ++++       +++t+  q   +  ++k+  V+DT g+ ++++   +i   +      + +  +++++v++++  +   d+
  EGE26314.1   8 ALIGRPNVGKSTLFNQLTKSRQALVA-DLAGLTRDRQYGDAHFENKSFIVVDTGGIGEMDDGSGNIDDYMATQSYTAIHEADIVVFVVDARaGLIGADS 105
                 69**************9887664444.579******************************99988988888777777788999*999998855554555 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 6.1e-06
                 EEEEESSTTSSHHHHHHHHHTS--...SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHH.HHHHHHHHCTT-ESEEEEEEETT.B CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkka...FesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkisk.eivrclllseegihalllvlslg.r 95 
                 ++ ++G+  +GkS+ +N +lg++    F+      + t+ +     +++g++ + iDT g+      ++k++k ++v+ l+  ++  ++++lv++++  
  EGE26314.1 181 KLAIIGRPNVGKSTLVNRLLGEDRvvvFDMP----GTTRDSIYIPFEREGRSYVLIDTAGVRRRGRIDEKVEKfSVVKTLQAIKD-ANVVVLVIDAKeG 274
                 57799*****************984445555....78888888888***************999999999988467776665555.99******99866 PP

                 -SHHH CS
        AIG1  96 fteed 100
                 + ++d
  EGE26314.1 275 IVDQD 279
                 66666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00077      0.36       3      72 ..       5      95 ..       3     100 .. 0.67
   2 !   15.3   0.0   2.6e-05     0.012       3      37 ..     180     216 ..     178     313 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00077
      AAA_24  3 lkiliyGpsgiGKTtlakel..gpkplfi.......dtekGlksldadkfpdie............swedfldevvelaaeladyktlviD 72
                  ++++G + +GK+tl ++l    ++l+        d   G ++ +++ f  +             +++d + +  + a ++ad+ + v+D
  EGE26314.1  5 PVVALIGRPNVGKSTLFNQLtkSRQALVAdlagltrDRQYGDAHFENKSFIVVDtggigemddgsgNIDDYMATQSYTAIHEADIVVFVVD 95
                6799****************95555555555555554444444444444444446666666666666777777777777777777777777 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.6e-05
      AAA_24   3 lkiliyGpsgiGKTtlakel..gpkplfidtekGlks 37 
                 lk++i+G + +GK+tl+++l  +++++++d+ + +++
  EGE26314.1 180 LKLAIIGRPNVGKSTLVNRLlgEDRVVVFDMPGTTRD 216
                 799******************9999999987654443 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00051      0.24       2      24 ..       7      29 ..       6     127 .. 0.51
   2 !   12.4   0.0   0.00029      0.13       1      22 [.     181     202 ..     181     217 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00051
                EEEESSTTSSHHHHHHCHCT-CC CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkf 24
                v l+G  +vGK++l++++++++ 
  EGE26314.1  7 VALIGRPNVGKSTLFNQLTKSRQ 29
                679***************97654 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00029
                 EEEEESSTTSSHHHHHHCHCT- CS
         Roc   1 KvvlvGdsgvGKtsllkrfved 22 
                 K+ ++G  +vGK++l++r++ +
  EGE26314.1 181 KLAIIGRPNVGKSTLVNRLLGE 202
                 899***************9875 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   4.6e-05     0.021       2     118 ..       7     129 ..       6     167 .. 0.74
   2 !    9.5   0.0    0.0015      0.68       1      58 [.     181     237 ..     181     273 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.6e-05
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH........HHHHHHTT.ESEEEEEEETTBHHHHHTHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefks........lrelyyrd.aegillvyditsresfenvk 91 
                 + l+G  +vGK++l ++ +k++     +   g    ++  +++ ++ ++ + DT G  e +         +++++y+   e+ ++v+ ++ r+ +  ++
  EGE26314.1   7 VALIGRPNVGKSTLFNQLTKSRQALVADL-AGLTRDRQYGDAHFENKSFIVVDTGGIGEMDDgsgniddyMATQSYTAiHEADIVVFVVDARAGLIGAD 104
                 579****************9986665544.45777777777778888899999999887753223322336666666515677**************** PP

                 HHHHHHHHHSTTTSEEEEEEETTTGGG CS
         Ras  92 kwveeikrvaeenvpivLvGnKvDlee 118
                 + + ++ ++  +  p+ Lv+nK+D  +
  EGE26314.1 105 SEIAHFLHTLGK--PVFLVANKMDGVH 129
                 *99999999997..9*********765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0015
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTS CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGq 58 
                 Kl ++G  +vGK++l++r   ++    +++       +  i ++ +  +  + DTAG 
  EGE26314.1 181 KLAIIGRPNVGKSTLVNRLLGEDRVVVFDMPG-TTRDSIYIPFEREGRSYVLIDTAGV 237
                 899***************98766554444322.3333333444444444555677775 PP

>> Nuc_deoxyri_tr2  Nucleoside 2-deoxyribosyltransferase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00027      0.12      64     106 ..      80     123 ..      67     125 .. 0.86
   2 !   11.6   0.1   0.00058      0.27      57     105 ..     248     297 ..     236     300 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00027
                      HHHHHHH-SEEEEEE-TT---HHHH.HHHHHHTTS.S-EEEEE-T CS
  Nuc_deoxyri_tr2  64 elealekAdvvvfvfdgedsatrsl.vElglaaak.gkkvvlvpk 106
                       + a+++Ad+vvfv+d  + + ++   E++++ ++ gk+v+lv +
       EGE26314.1  80 SYTAIHEADIVVFVVDA-RAGLIGAdSEIAHFLHTlGKPVFLVAN 123
                      67899************.55677779******9999****99976 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00058
                      ..HHHHHHHHHHHH-SEEEEEE-TT--.-HHHHHHHHHHTTSS-EEEEE- CS
  Nuc_deoxyri_tr2  57 freqvewelealekAdvvvfvfdgeds.atrslvElglaaakgkkvvlvp 105
                       +  v   l+a+++A+vvv v+d ++      l  lg+a   g+++v+++
       EGE26314.1 248 EKFSVVKTLQAIKDANVVVLVIDAKEGiVDQDLHMLGYALDAGRAIVVAI 297
                      455677889***************544545678************99876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0018      0.82      13      36 ..       6      29 ..       1      85 [. 0.87
   2 !   10.8   0.0    0.0011      0.52      13      36 ..     181     204 ..     177     314 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0018
                EEEEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllk 36
                +va++G+   GKStL++ l++  +
  EGE26314.1  6 VVALIGRPNVGKSTLFNQLTKSRQ 29
                79****************998766 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0011
                 EEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllk 36 
                 k+ai+G+   GKStL++ l+g+ +
  EGE26314.1 181 KLAIIGRPNVGKSTLVNRLLGEDR 204
                 78*****************99976 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0052       2.4       7      30 ..       6      29 ..       3      67 .. 0.80
   2 !   11.0   0.0   0.00085      0.39       8      53 ..     182     215 ..     176     283 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0052
      AAA_22  7 ilvvtGesGtGKTtllrrlleqld 30
                +++++G + +GK+tl ++l+++ +
  EGE26314.1  6 VVALIGRPNVGKSTLFNQLTKSRQ 29
                6799***************99874 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00085
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstss 53 
                 l+++G + +GK+tl++rll ++           +vv +++p+ t +
  EGE26314.1 182 LAIIGRPNVGKSTLVNRLLGED-----------RVVVFDMPGTT-R 215
                 78****************9975...........56666665555.4 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.19        87       1      26 [.       5      30 ..       5      62 .. 0.81
   2 !    9.5   0.0    0.0015       0.7      71     157 ..      33     132 ..      26     138 .. 0.77
   3 ?    1.2   0.0      0.52   2.4e+02       5      22 ..     184     201 ..     180     209 .. 0.79
   4 ?    6.6   0.2     0.012       5.3      84     158 ..     228     308 ..     220     321 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.19
                EEEEEEESTTCCHHHHHHHHHCT--S CS
        cobW  1 pvtvltGflGsGKTtLlnhllenrag 26
                pv+ l G +  GK+tL n+l++ r+ 
  EGE26314.1  5 PVVALIGRPNVGKSTLFNQLTKSRQA 30
                67889999999*********977654 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0015
                 HHHHHHHHHH.......TT-SEEEEEECTTTTHHHH......HTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC CS
        cobW  71 kelealeere.......erldviliEttGlaePapv......afteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee 156
                 + l+ l +++       e+ + i++ t+G+ e           + ++++++  ++d+vv+vvDa++     +++   + + l +  +lv nK+D + e+
  EGE26314.1  33 ADLAGLTRDRqygdahfENKSFIVVDTGGIGEMDDGsgniddYMATQSYTAIHEADIVVFVVDARAGLIGADSEIAHFLHTLGKPVFLVANKMDGVHEA 131
                 555555555566666666778999999999887766454344344889999999**********99988888999999999*************99987 PP

                 . CS
        cobW 157 a 157
                 a
  EGE26314.1 132 A 132
                 5 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.52
                 EEESTTCCHHHHHHHHHC CS
        cobW   5 ltGflGsGKTtLlnhlle 22 
                 + G +  GK+tL+n+ll 
  EGE26314.1 184 IIGRPNVGKSTLVNRLLG 201
                 6677778*********93 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.012
                 SEEEEEECTTTTHHHH.....HTT.SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC.. CS
        cobW  84 dviliEttGlaePapv.....aft.eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeal 158
                 +++li t G+     +      f+  ++l++   +++vv v+Dak+   +++     +      a ++ +nK+D l+++++
  EGE26314.1 228 SYVLIDTAGVRRRGRIdekveKFSvVKTLQAIKDANVVVLVIDAKEGIVDQDLHMLGYALDAGRAIVVAINKWDGLSQDQK 308
                 5667777776666666553232225677777888999*******9998788888888888888999999******999944 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00089      0.41       1      38 [.       7      54 ..       7     118 .. 0.69
   2 ?    7.5   0.0     0.012       5.7       3      56 ..     184     247 ..     182     281 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00089
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf.........gvnlrdvakengll 38
                ++l G p vGK+tl + L k+  ++          ++++d ++en + 
  EGE26314.1  7 VALIGRPNVGKSTLFNQLTKSRqALvadlagltrDRQYGDAHFENKSF 54
                6899**************888734455555555555555555554443 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.012
      AAA_18   3 ltGtpGvGKttlakeL..skrlgf..........gvnlrdvakenglllevdpealdeskrldedk 56 
                 + G p vGK+tl ++L  ++r  +            +++   +e++++   d + +++  r+de++
  EGE26314.1 184 IIGRPNVGKSTLVNRLlgEDR--VvvfdmpgttrDSIYIPFEREGRSYVLIDTAGVRRRGRIDEKV 247
                 89***********99954333..1234555555544555555555555555555666666666655 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.023        10      36      59 ..       5      28 ..       2      36 .. 0.85
   2 !   10.7   0.0   0.00057      0.26      32     126 ..     176     270 ..     155     278 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.023
        TniB 36 pnlllvGdsnnGKtmivekFarlh 59
                p + l+G++n+GK++++++ ++++
  EGE26314.1  5 PVVALIGRPNVGKSTLFNQLTKSR 28
                66899************9988765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00057
        TniB  32 rkrmpnlllvGdsnnGKtmivekFarlhp.pekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskle.qqvlrllrelkvrvLiiD 126
                  +++ +l ++G++n+GK+++v++   +++    d   ++++ +++    +     l +   + ++ + + +++v+k+   ++l+ +++ +v vL+iD
  EGE26314.1 176 DSKTLKLAIIGRPNVGKSTLVNRLLGEDRvVVFDMPGTTRDSIYIPFEREGRSYVLIDT--AGVRRRGRIDEKVEKFSvVKTLQAIKDANVVVLVID 270
                 5677889****************985554145677777777777776666655555443..456666666666666542356667777777777777 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00062      0.28       3      28 ..       4      29 ..       2     115 .. 0.72
   2 ?    5.7   0.0     0.019       8.7       6      79 ..     182     256 ..     177     306 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00062
                --EEEEE-STTSSHHHHHHHHHHSS- CS
       SRPRB  3 kpavllvGlsdsGKTslftrLttdsv 28
                kp v l+G  + GK +lf++Lt+   
  EGE26314.1  4 KPVVALIGRPNVGKSTLFNQLTKSRQ 29
                78999****************98733 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.019
                 EEEE-STTSSHHHHHHHHHHS.S---B---S..S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEE CS
       SRPRB   6 vllvGlsdsGKTslftrLttd.svkktvtSq..essaalkvksekgskltliDfPGheklrqklleklkaksslkgl 79 
                 + ++G  + GK +l +rL+ +  v    +      s+     +++g +  liD  G    r ++ ek+ + s +k+l
  EGE26314.1 182 LAIIGRPNVGKSTLVNRLLGEdRVVVFDMPGttRDSIYIP-FEREGRSYVLIDTAGVR-RRGRIDEKVEKFSVVKTL 256
                 6799*************99763222222222113333333.47888899999988854.466666665555555554 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.022        10      19     127 ..       9     127 ..       4     138 .. 0.59
   2 !    8.2   0.0    0.0033       1.5      10      41 ..     175     206 ..     168     220 .. 0.81
   3 ?   -0.8   0.1         2   9.2e+02      95     128 ..     241     272 ..     229     313 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.022
                 EEESTTSSHHHHHHHHHHSSCEECSS....SSSEEEEEEEETTEEEEEEEE-SSGGGGG.......GG..GGGC..TTESEEEEEEETT-CTTHHHHHH CS
         Arf  19 llGLDnaGKtTilkklkleelvttvP....TigfnveeleiknlkftvwDvGGqeklRp.......lW..knYf..ektdavifvvDsadreRleeake 102
                 l+G  n GK+T+ ++l++ +++ +      T   +  + +++n +f v D GG  ++         +   ++Y+  ++ d v+fvvD+     l  a +
  EGE26314.1   9 LIGRPNVGKSTLFNQLTKSRQALVADlaglTRDRQYGDAHFENKSFIVVDTGGIGEMDDgsgniddYMatQSYTaiHEADIVVFVVDAR--AGLIGADS 105
                 67778899999999999888777554111144455566777888888888887554432111111132113443224678888999874..45667777 PP

                 HHHHHCTSGCCTTSEEEEEEE-TTS CS
         Arf 103 eLkalleeeelkevallvlaNKqDl 127
                 e++++l++  l   ++ ++aNK+D 
  EGE26314.1 106 EIAHFLHT--L-GKPVFLVANKMDG 127
                 77777754..2.3455556777775 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0033
                 T.TTEEEEEEEESTTSSHHHHHHHHHHSSCEE CS
         Arf  10 lkkkelrilllGLDnaGKtTilkklkleelvt 41 
                 l +k l++ ++G  n GK+T++++l  e+ v 
  EGE26314.1 175 LDSKTLKLAIIGRPNVGKSTLVNRLLGEDRVV 206
                 457999*******************9888665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2
                 TTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTST CS
         Arf  95 eRleeakeeLkalleeeelkevallvlaNKqDlp 128
                  R++e  e+++ + + + +k++ ++vl   +D++
  EGE26314.1 241 GRIDEKVEKFSVVKTLQAIKDANVVVLV--IDAK 272
                 4666666666666666666655555553..3333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0075       3.4       2      21 ..       8      27 ..       7      52 .. 0.87
   2 ?    7.0   0.0     0.016       7.4       3      19 ..     184     200 ..     182     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0075
  RNA_helicase  2 wlyGpsgeGKStlakeLaka 21
                   l G++++GKStl ++L+k+
    EGE26314.1  8 ALIGRPNVGKSTLFNQLTKS 27
                  689*************9875 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.016
  RNA_helicase   3 lyGpsgeGKStlakeLa 19 
                   + G++++GKStl+++L 
    EGE26314.1 184 IIGRPNVGKSTLVNRLL 200
                   89************975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0      0.03        14      25      47 ..       5      27 ..       2      55 .. 0.80
   2 !    8.7   0.0    0.0047       2.1      27      63 ..     182     217 ..     172     295 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.03
      AAA_16 25 elvllsGesGvGKsslvrellra 47
                ++v l+G + vGKs+l ++l ++
  EGE26314.1  5 PVVALIGRPNVGKSTLFNQLTKS 27
                6799**************99973 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0047
      AAA_16  27 vllsGesGvGKsslvrellralekdg.gif.lrgkcdql 63 
                 + ++G + vGKs+lv++ll    +d+ ++f + g+++++
  EGE26314.1 182 LAIIGRPNVGKSTLVNRLL---GEDRvVVFdMPGTTRDS 217
                 6799***********9999...46662444877777776 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.38   1.8e+02       2      22 ..      10      30 ..       9      35 .. 0.86
   2 ?   -1.2   0.0         3   1.4e+03     153     173 ..     112     134 ..      85     166 .. 0.76
   3 ?    2.1   0.0      0.29   1.4e+02       1      16 [.     184     199 ..     184     202 .. 0.91
   4 !    7.1   0.0    0.0089       4.1      88     175 ..     224     309 ..     189     322 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.38
  ATP_bind_1  2 vGpaGsGKttfvgalseilel 22
                +G + +GK+t+ ++l++ +++
  EGE26314.1 10 IGRPNVGKSTLFNQLTKSRQA 30
                79999*********9987765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3
  ATP_bind_1 153 lrlelPhvvvlnkfDllkek..l 173
                  +l+ P   v nk+D++ e   +
  EGE26314.1 112 HTLGKPVFLVANKMDGVHEAayA 134
                 56788999999***998855433 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.29
  ATP_bind_1   1 vvGpaGsGKttfvgal 16 
                 ++G + +GK+t+v++l
  EGE26314.1 184 IIGRPNVGKSTLVNRL 199
                 79***********987 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0089
  ATP_bind_1  88 keeddyllfDtPGQielfthseslak..iveeLes.efalvvvyLvDsqr.ltdptkfisgllsalsamlrlelPhvvvlnkfDllkeklek 175
                 +e ++y+l+Dt G  +   + e+  k  +v++L+  + a vvv ++D++  + d      + l  l   l ++   vv++nk D+l+++++ 
  EGE26314.1 224 REGRSYVLIDTAGVRRRGRIDEKVEKfsVVKTLQAiKDANVVVLVIDAKEgIVD------QDLHMLGYALDAGRAIVVAINKWDGLSQDQKD 309
                 4456899999999887665555544311799***99777788888887531444......334445578899999**********9977433 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.019         9      31      51 ..       6      26 ..       4      34 .. 0.89
   2 !    7.5   0.0    0.0039       1.8      28      50 ..     178     200 ..     171     205 .. 0.88
   3 ?   -1.9   0.0       2.8   1.3e+03     194     229 ..     314     349 ..     287     363 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.019
                EEEEEE-TTSSHHHHHHHHHH CS
        MeaB 31 vvGltGvPGaGkstlvealgl 51
                vv l G P +Gkstl ++l+ 
  EGE26314.1  6 VVALIGRPNVGKSTLFNQLTK 26
                78999************9986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0039
                 -SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  28 raqvvGltGvPGaGkstlvealg 50 
                 ++ ++ + G P +Gkstlv++l 
  EGE26314.1 178 KTLKLAIIGRPNVGKSTLVNRLL 200
                 678899**************985 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.8
                 HHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHHH CS
        MeaB 194 eleeekekeWrpkvlktsavegeGidelvdaieehr 229
                 e++++++     k+  +sa+ g+G+ +l   i++  
  EGE26314.1 314 EIDRRFNFVPWVKIHLISALYGNGVGKLYPSIHKAY 349
                 444444322224677889999999999999887654 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.17        79       4      23 ..       7      26 ..       4      34 .. 0.87
   2 ?    4.8   0.0     0.047        21      60     141 ..      83     162 ..      68     164 .. 0.73
   3 ?    3.2   0.0      0.15        67       3      24 ..     181     202 ..     179     206 .. 0.88
   4 ?    0.5   0.0      0.98   4.5e+02      61     138 ..     259     342 ..     241     347 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.17
   PduV-EutP  4 illiGkvgsGKttLtqalkg 23
                + liG+ ++GK tL ++l++
  EGE26314.1  7 VALIGRPNVGKSTLFNQLTK 26
                679***********999976 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.047
   PduV-EutP  60 tsaeadvialvqdateeesvfp...pgfasvfnkeviGiitkidlaedeenieaveelLksaGaekifevsavekegieellkyl 141
                 + +ead++++v+da +         ++f +++ k+v  +  k+d ++     ea+  ++ + G  + + + a +  g+ +ll+ l
  EGE26314.1  83 AIHEADIVVFVVDARAGLIGADseiAHFLHTLGKPVFLVANKMDGVH-----EAAYAEFFALGFGEPYATAASHGRGVTNLLESL 162
                 4579*********99875544411146778889***********994.....344556677888888888888888888887766 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.15
   PduV-EutP   3 killiGkvgsGKttLtqalkge 24 
                 k+ +iG+ ++GK tL ++l ge
  EGE26314.1 181 KLAIIGRPNVGKSTLVNRLLGE 202
                 6779*************99876 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.98
   PduV-EutP  61 saeadvialvqdate...eesvfppgfasvfnkeviGiitkid.laedeeniea..veelLksaGaekifevsavekegieell 138
                   +a+v++lv da+e    + +   g+a    + ++  i k d l++d+++  +    ++++ +   ki  +sa+  +g+ +l 
  EGE26314.1 259 IKDANVVVLVIDAKEgivDQDLHMLGYALDAGRAIVVAINKWDgLSQDQKDFVKieIDRRFNFVPWVKIHLISALYGNGVGKLY 342
                 358999999999987222355566666666677777777777733344443322012456667777777777777777777775 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.019       8.8       2      22 ..       7      27 ..       6      43 .. 0.83
   2 !    7.7   0.0    0.0069       3.2       2      20 ..     182     200 ..     181     233 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.019
                EEEE--TTSSHHHHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlel 22
                v++ G+p vGK+Tl++++++ 
  EGE26314.1  7 VALIGRPNVGKSTLFNQLTKS 27
                6788***********998765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0069
                 EEEE--TTSSHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvl 20 
                 ++i G+p vGK+Tlv+++l
  EGE26314.1 182 LAIIGRPNVGKSTLVNRLL 200
                 6799***********9987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.015         7      24      39 ..       6      21 ..       1      26 [. 0.84
   2 !    7.5   0.0    0.0073       3.3      23      39 ..     179     196 ..     171     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.015
      AAA_29 24 atlltGpsGsGKSTll 39
                ++ l+G+  +GKSTl+
  EGE26314.1  6 VVALIGRPNVGKSTLF 21
                5789**********97 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0073
      AAA_29  23 g.atlltGpsGsGKSTll 39 
                      ++G+  +GKSTl+
  EGE26314.1 179 TlKLAIIGRPNVGKSTLV 196
                 44578************8 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0088         4       3      27 ..       5      29 ..       4      60 .. 0.81
   2 ?    6.9   0.0     0.013       5.9       5      42 ..     182     226 ..     179     271 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0088
      AAA_14  3 kilvitGaRrvGKTtllkqlikell 27
                +++++ G   vGK+tl +ql k++ 
  EGE26314.1  5 PVVALIGRPNVGKSTLFNQLTKSRQ 29
                688999999***********98776 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.013
      AAA_14   5 lvitGaRrvGKTtllkqlikell.......vkkesilyinldder 42 
                 l+i G   vGK+tl+++l+ e          + ++ +yi +++e 
  EGE26314.1 182 LAIIGRPNVGKSTLVNRLLGEDRvvvfdmpGTTRDSIYIPFEREG 226
                 57889999**********998888888877677888888888765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0034       1.6      22      45 ..       6      29 ..       2      34 .. 0.87
   2 ?    5.2   0.0     0.022        10      17      42 ..     176     201 ..     167     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0034
                EEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnksd 45
                vval G++ vGK+tl++q  ++ +
  EGE26314.1  6 VVALIGRPNVGKSTLFNQLTKSRQ 29
                89****************998855 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.022
                 TSCSEEEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  17 elqslvvalvGmgGvGKttlakqiln 42 
                 ++++l +a+ G++ vGK+tl++  l 
  EGE26314.1 176 DSKTLKLAIIGRPNVGKSTLVNRLLG 201
                 44456699************988765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.012       5.6       2      31 ..       7      36 ..       6      59 .. 0.82
   2 ?    6.6   0.0     0.018       8.3       2      26 ..     182     206 ..     181     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.012
      AAA_28  2 ivitGgestGKTtlleaLaargypvvpEaa 31
                ++++G +  GK+tl ++L++     v++ a
  EGE26314.1  7 VALIGRPNVGKSTLFNQLTKSRQALVADLA 36
                899***************987666666655 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.018
      AAA_28   2 ivitGgestGKTtlleaLaargypv 26 
                  +i+G +  GK+tl+++L  ++ +v
  EGE26314.1 182 LAIIGRPNVGKSTLVNRLLGEDRVV 206
                 689**************98654444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.037        17       2      25 ..       8      31 ..       7      96 .. 0.73
   2 !    7.9   0.0    0.0087         4       3      74 ..     184     279 ..     182     315 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.037
                EEESSTTSSHHHHHHHHHHHHTHE CS
         AAA  2 llyGppGtGKTllakavakelgve 25
                 l+G p +GK++l +++ k+ ++ 
  EGE26314.1  8 ALIGRPNVGKSTLFNQLTKSRQAL 31
                699************999985433 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0087
                 EESSTTSSHHHHHHHHHHH.......HTHEEEEEETTTCSSS.........................STTHHHHH..HHHHHHHHHHTSTSEEEEEETG CS
         AAA   3 lyGppGtGKTllakavake.......lgvefleisgsellsk.........................yvgesekk..irelfkeakekakpsilfiDEi 67 
                 ++G p +GK++l++ +  e       +         +  + +                          + e+ +k  + ++++++k  +  ++l+iD  
  EGE26314.1 184 IIGRPNVGKSTLVNRLLGEdrvvvfdM---------PGTTRDsiyipferegrsyvlidtagvrrrgRIDEKVEKfsVVKTLQAIKDAN-VVVLVIDAK 272
                 78****************944433330.........32221123444444444444444444443345555555411445566666655.788888877 PP

                 GGHHHHH CS
         AAA  68 dalaksr 74 
                 + ++ ++
  EGE26314.1 273 EGIVDQD 279
                 7776666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.016       7.3       1      25 [.       6      30 ..       6      51 .. 0.87
   2 ?    6.9   0.0     0.015       6.8       4      27 ..     184     207 ..     182     258 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.016
      AAA_33  1 lvllvGlpGsGKstlaerllkklga 25
                +v l+G p +GKstl  +l k ++a
  EGE26314.1  6 VVALIGRPNVGKSTLFNQLTKSRQA 30
                7999***************988775 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.015
      AAA_33   4 lvGlpGsGKstlaerllkklgavl 27 
                 ++G p +GKstl+ rll +  +v+
  EGE26314.1 184 IIGRPNVGKSTLVNRLLGEDRVVV 207
                 68999************9887666 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0016      0.72       6      29 ..       7      30 ..       3      43 .. 0.86
   2 ?    2.6   0.0      0.25   1.1e+02       8      23 ..     184     199 ..     178     216 .. 0.86
   3 ?   -2.3   0.0       7.7   3.5e+03     105     129 ..     285     309 ..     273     368 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0016
  Ploopntkinase3  6 iylvGqPGaGkstlmaeltkgfdr 29
                    + l+G P  Gkstl  +ltk+ + 
      EGE26314.1  7 VALIGRPNVGKSTLFNQLTKSRQA 30
                    679****************99765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
  Ploopntkinase3   8 lvGqPGaGkstlmael 23 
                     ++G P  Gkstl+  l
      EGE26314.1 184 IIGRPNVGKSTLVNRL 199
                     89**********9887 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 7.7
  Ploopntkinase3 105 aaleaGyevtlalldhdqadawrka 129
                      al+aG ++ +a+ + d   + +k 
      EGE26314.1 285 YALDAGRAIVVAINKWDGLSQDQKD 309
                     5777777777776655554443333 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       8.3   3.8e+03       3      24 ..       6      27 ..       5      41 .. 0.79
   2 ?    1.8   0.1      0.34   1.6e+02      81     140 ..      49     114 ..      36     132 .. 0.66
   3 ?    9.7   0.0    0.0013       0.6      80     126 ..     223     274 ..     212     281 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 8.3
                EEEEEESTTSSHHHHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKLaal 24
                v++l+G   +GK t   +L + 
  EGE26314.1  6 VVALIGRPNVGKSTLFNQLTKS 27
                6788888899999999888765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.34
                 HTTSSEEEEEE--SSTTHH..HHHHHHHHHHHHH...SSSEEEEEEETTBHTHHHH.HHHHHHHHS CS
       SRP54  81 eekidvvlvDTaGrlqndk..elmeelkkikkvv...kpdevllvldattgqeavk.qakaFkeav 140
                  e+  +++vDT G  + d+    +++  ++++ +   ++d v++v+da +g   +  ++ +F +++
  EGE26314.1  49 FENKSFIVVDTGGIGEMDDgsGNIDDYMATQSYTaihEADIVVFVVDARAGLIGADsEIAHFLHTL 114
                 567789999999877776522456665555544444488889999999998765543566665555 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0013
                 HHTTSSEEEEEE--.....SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBH CS
       SRP54  80 keekidvvlvDTaG.....rlqndkelmeelkkikkvvkpdevllvldattg 126
                 ++e+  +vl+DTaG     r  ++ e ++ +k+++ + +++ v+lv+da  g
  EGE26314.1 223 EREGRSYVLIDTAGvrrrgRIDEKVEKFSVVKTLQAIKDANVVVLVIDAKEG 274
                 5677889******6554448889999999999999999**********9876 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.079        36       8      29 ..       8      29 ..       3      73 .. 0.77
   2 ?    7.0   0.0    0.0068       3.1       4      29 ..     179     204 ..     176     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.079
                EEEEBTTSSCCCCCCTTSSSS- CS
      Septin  8 mvvGesglGkttlintlfetdl 29
                 ++G+  +Gk+tl+n l +++ 
  EGE26314.1  8 ALIGRPNVGKSTLFNQLTKSRQ 29
                578999**********998764 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0068
                 EEEEEEEEBTTSSCCCCCCTTSSSS- CS
      Septin   4 eftlmvvGesglGkttlintlfetdl 29 
                 ++ l ++G+  +Gk+tl+n l+ +d 
  EGE26314.1 179 TLKLAIIGRPNVGKSTLVNRLLGEDR 204
                 67899****************98775 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0025       1.1       2      38 ..       5      60 ..       4      86 .. 0.77
   2 ?    2.3   0.0      0.21        96       6      21 ..     184     199 ..     182     261 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0025
                .EEEEE--TTSSHHHHHHHHHHHHHH...................TT--EEEE-TH CS
       KTI12  2 pLvvltGlPssGKstrakeLakalee...................ekrsvvvidde 38
                p v l G P +GKst+ ++L k  ++                   e++s +v+d+ 
  EGE26314.1  5 PVVALIGRPNVGKSTLFNQLTKSRQAlvadlagltrdrqygdahfENKSFIVVDTG 60
                7899****************998777666777777777777777777777777665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.21
                 EE--TTSSHHHHHHHH CS
       KTI12   6 ltGlPssGKstrakeL 21 
                 + G P +GKst++++L
  EGE26314.1 184 IIGRPNVGKSTLVNRL 199
                 78**********9998 PP

>> YopD  YopD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00023      0.11     139     198 ..     247     307 ..     241     322 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
        YopD 139 vgslsavknskavkqektlesniaGrnklidaklqqlgkisdkdreaiGkvWkaeq.vadk 198
                 v  +s+vk  +a+k  +++   i+ ++ ++d  l  lg + d+ r+++  + k +   +d+
  EGE26314.1 247 VEKFSVVKTLQAIKDANVVVLVIDAKEGIVDQDLHMLGYALDAGRAIVVAINKWDGlSQDQ 307
                 5689*******************************************99986655312333 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0       0.1        48       1      22 [.       6      27 ..       6      53 .. 0.86
   2 ?    5.6   0.0      0.03        14       2      21 ..     182     201 ..     181     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.1
        MobB  1 vlgivgksgsGKTtLleklipe 22
                v++++g+ + GK tL ++l + 
  EGE26314.1  6 VVALIGRPNVGKSTLFNQLTKS 27
                6899**************9876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.03
        MobB   2 lgivgksgsGKTtLleklip 21 
                 l+i+g+ + GK tL+++l+ 
  EGE26314.1 182 LAIIGRPNVGKSTLVNRLLG 201
                 789**************986 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.38   1.8e+02      28      44 ..       9      25 ..       5      28 .. 0.88
   2 ?    7.3   0.0    0.0051       2.3       7      43 ..     163     199 ..     158     208 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.38
                EE-SSSSSTTTTHHHHH CS
        DAP3 28 ltGekgsGKSvlLlqal 44
                l G++ +GKS+l +q+ 
  EGE26314.1  9 LIGRPNVGKSTLFNQLT 25
                78***********9975 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0051
                 HHHHHHHHTTS-SSS---EEEEE-SSSSSTTTTHHHH CS
        DAP3   7 tlelikklkkadkkkkvkrlvltGekgsGKSvlLlqa 43 
                 t ++ + + k++ ++k+ +l + G++ +GKS+l++ +
  EGE26314.1 163 TADMPEDMPKDELDSKTLKLAIIGRPNVGKSTLVNRL 199
                 56677888899999******************99865 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.023        11      21      43 ..       3      24 ..       1      78 [. 0.69
   2 ?    4.0   0.0     0.074        34      23      41 ..     177     197 ..     172     200 .. 0.76
   3 ?   -2.8   0.3       8.7     4e+03      78     113 ..     429     462 ..     412     471 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.023
      AAA_15 21 lseeltvliGkNnsGKSsileal 43
                +++ +  liG+ n+GKS++ + l
  EGE26314.1  3 IKP-VVALIGRPNVGKSTLFNQL 24
                677.999***********98777 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.074
      AAA_15  23 ee..ltvliGkNnsGKSsile 41 
                 ++     +iG+ n+GKS++++
  EGE26314.1 177 SKtlKLAIIGRPNVGKSTLVN 197
                 4444668***********986 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 8.7
      AAA_15  78 kIdvefaekekakeyektlkskekkkadlllkkkes 113
                  ++vef  k++a+ ye  +++  k+ka+l+ +kk+ 
  EGE26314.1 429 PLQVEF--KQNANPYEGKKNPVVKNKAKLMREKKRI 462
                 456666..4556666666666666666544444443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.048        22      35      53 ..       6      24 ..       3      28 .. 0.87
   2 ?   -2.5   0.1       7.1   3.3e+03     136     160 ..      83     106 ..      62     109 .. 0.74
   3 ?    2.6   0.2      0.19        86      38      53 ..     184     199 ..     177     297 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.048
      AAA_25 35 lallaGapgtGKttlaldl 53
                +++l+G+p +GK+tl  +l
  EGE26314.1  6 VVALIGRPNVGKSTLFNQL 24
                789***********98766 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.1
      AAA_25 136 aieevegvrlvviDplsralggden 160
                 ai e +++++ v+D  + + g+d++
  EGE26314.1  83 AIHE-ADIVVFVVDARAGLIGADSE 106
                 4455.66888899999999999875 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.19
      AAA_25  38 laGapgtGKttlaldl 53 
                 ++G+p +GK+tl+  l
  EGE26314.1 184 IIGRPNVGKSTLVNRL 199
                 6788888888876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.38
# Mc/sec: 3709.19
//
Query:       EGE26315.1  [L=392]
Description: outer membrane assembly lipoprotein YfgL [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-45  155.5   9.5    1.1e-40  139.7   4.5    2.1  2  PQQ_2      PQQ-like domain
    3.2e-27   93.1   8.5    6.9e-05   22.6   0.0    7.6  8  PQQ        PQQ enzyme repeat
    5.3e-19   68.1  20.4    6.9e-05   23.2   0.2    7.0  7  PQQ_3      PQQ-like domain
    0.00036   20.0   0.0       0.23   10.8   0.0    2.1  2  WD40_like  WD40-like domain
  ------ inclusion threshold ------
       0.12   12.4   0.9         12    6.0   0.1    2.8  2  SUKH-4     SUKH-4 immunity protein


Domain annotation for each model (and alignments):
>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   4.5   3.1e-44   1.1e-40      15     236 ..     101     321 ..      91     322 .. 0.93
   2 !   26.4   0.2   1.3e-09   4.7e-06       2      89 ..     305     388 ..     304     392 .] 0.86

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 3.1e-44
       PQQ_2  15 elWrvdlarplgggvsravlsggtlfva.tgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdgqlialdaedGkrlWstqqrseepael 112
                 + W+ + ++ ++ggv  +  ++g ++v  t++g+l+alda tG+ +W ++l +  +++ l+++++v+v ++ g++ +ld+++G ++W+ + ++ +++++
  EGE26315.1 101 IAWQYNAEDVITGGV--GIDDQGSVAVIgTRSGKLIALDARTGAARWVVELASSSLAPALISGDKVIVITNSGTIFGLDINSGATVWQ-YATQVPNTSV 196
                 67999887789****..9988888888779************************9*********************************.99999***** PP

       PQQ_2 113 rssaspava.gdtvvvgessgklvaldpkdGkvlWerelaaprgtselsrvgdisgrpvvaegtVyassgqgrllaldlatgrrlwskeissinglpil 210
                 r+ a+p      tv++g+++g+++ald  +G ++W r ++ + g+ e+++++di+g+p+v+++++ya+s++g+l+ +d++tgr+ +  e+ss ++l  l
  EGE26315.1 197 RGMAKPLALdARTVLIGGADGRIHALDTMTGAPVWTRRVGLAMGSGEIDQLRDIDGTPTVVDHYLYAASYSGQLAGFDMTTGRTMFVSELSSTKKLTTL 295
                 **99998777*****************************999*******************99**********9999******9988888888997888 PP

       PQQ_2 211 dgdllyvvsagelialdratGavlWk 236
                 ++ ++  +++g ++a++r+tG++lW+
  EGE26315.1 296 ADAVIGSSTDGDVVAFNRMTGEKLWE 321
                 8777776667***************7 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 1.3e-09
       PQQ_2   2 egvvsaldaatGaelWrv.dlarplgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdgqli 89 
                 +g+v+a+++ tG++lW+  dl   +  g++ +v  g +++v++  g ++ l+   G+++ ++  +g  +++ +v ++r++++++dg+++
  EGE26315.1 305 DGDVVAFNRMTGEKLWENhDL---KYRGLTNPVTIGTYIAVGDADGVVHILN-HQGQIISRANTKGA-LTNLTVINNRLYAQSADGVVT 388
                 799***************888...5666668887899999998888888777.9*********9998.6666**************664 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.71   2.5e+03      22      31 ..     101     110 ..     100     113 .. 0.80
   2 !   19.7   0.0   1.5e-07   0.00055       4      34 ..     125     155 ..     123     159 .. 0.87
   3 !   19.0   0.1   2.5e-07   0.00091       4      29 ..     164     190 ..     161     193 .. 0.84
   4 !   22.6   0.0   1.9e-08   6.9e-05       2      34 ..     209     241 ..     204     245 .. 0.89
   5 !    9.2   0.0   0.00033       1.2       4      22 ..     262     280 ..     261     291 .. 0.91
   6 !   16.7   0.0   1.4e-06    0.0049       4      25 ..     299     321 ..     297     321 .. 0.92
   7 ?    2.7   0.0     0.038   1.4e+02       4      31 ..     340     367 ..     337     373 .. 0.83
   8 ?   -0.9   0.0      0.53   1.9e+03       1      13 [.     376     388 ..     376     389 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.71
                 EEEEEESSSC CS
         PQQ  22 vlWrfktggp 31 
                 + W+++++++
  EGE26315.1 101 IAWQYNAEDV 110
                 57***99986 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.5e-07
                 EEEETTSEEEEEETTTCCEEEEEESSSCGSS CS
         PQQ   4 ylgsadGylyAlDadTGkvlWrfktggpvls 34 
                 ++g++ G+l AlDa+TG  +W++++ +  l+
  EGE26315.1 125 VIGTRSGKLIALDARTGAARWVVELASSSLA 155
                 799********************99876665 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 2.5e-07
                 EEE.ETTSEEEEEETTTCCEEEEEESS CS
         PQQ   4 ylg.sadGylyAlDadTGkvlWrfktg 29 
                 ++  ++ G+++ lD+++G  +W++ t+
  EGE26315.1 164 VIViTNSGTIFGLDINSGATVWQYATQ 190
                 445599******************986 PP

  == domain 4  score: 22.6 bits;  conditional E-value: 1.9e-08
                 EEEEEETTSEEEEEETTTCCEEEEEESSSCGSS CS
         PQQ   2 vvylgsadGylyAlDadTGkvlWrfktggpvls 34 
                 +v +g adG++ AlD  TG  +W+ ++g +  s
  EGE26315.1 209 TVLIGGADGRIHALDTMTGAPVWTRRVGLAMGS 241
                 78999*******************999877666 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.00033
                 EEEETTSEEEEEETTTCCE CS
         PQQ   4 ylgsadGylyAlDadTGkv 22 
                 y++s+ G+l  +D++TG+ 
  EGE26315.1 262 YAASYSGQLAGFDMTTGRT 280
                 999**************86 PP

  == domain 6  score: 16.7 bits;  conditional E-value: 1.4e-06
                 EEE.ETTSEEEEEETTTCCEEEE CS
         PQQ   4 ylg.sadGylyAlDadTGkvlWr 25 
                 ++g s dG ++A+++ TG++lW+
  EGE26315.1 299 VIGsSTDGDVVAFNRMTGEKLWE 321
                 78989*****************6 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.038
                 EEE.ETTSEEEEEETTTCCEEEEEESSSC CS
         PQQ   4 ylg.sadGylyAlDadTGkvlWrfktggp 31 
                 ++  +adG++  l+   G+++ r +t+g+
  EGE26315.1 340 IAVgDADGVVHILN-HQGQIISRANTKGA 367
                 44459*********.99999999999886 PP

  == domain 8  score: -0.9 bits;  conditional E-value: 0.53
                 TEEEEEETTSEEE CS
         PQQ   1 gvvylgsadGyly 13 
                 +++y+ sadG++ 
  EGE26315.1 376 NRLYAQSADGVVT 388
                 678999****985 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.3   6.8e-07    0.0024       3      40 .]     101     140 ..      98     140 .. 0.90
   2 !   13.3   0.0   2.5e-05     0.089       2      39 ..     142     179 ..     141     180 .. 0.91
   3 !   23.2   0.2   1.9e-08   6.9e-05       1      38 [.     181     224 ..     181     226 .. 0.85
   4 !   14.4   0.4   1.1e-05      0.04       4      40 .]     230     277 ..     227     277 .. 0.74
   5 ?    2.1   0.1     0.084     3e+02      24      38 ..     299     313 ..     291     315 .. 0.78
   6 !    6.0   0.0    0.0048        17       1      36 [.     316     352 ..     316     355 .. 0.92
   7 ?   -0.2   0.0      0.43   1.5e+03      21      34 ..     375     388 ..     359     390 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.8e-07
       PQQ_3   3 vlWsvqlpgpvnsspavdg..glvyvgtgdGtlyAlDaet 40 
                 + W+++  + +++++ +d+   + ++gt  G+l AlDa+t
  EGE26315.1 101 IAWQYNAEDVITGGVGIDDqgSVAVIGTRSGKLIALDART 140
                 57****************73259***************98 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.5e-05
       PQQ_3   2 evlWsvqlpgpvnsspavdgglvyvgtgdGtlyAlDae 39 
                   +W v+l +   ++++++g++v v t  Gt++ lD +
  EGE26315.1 142 AARWVVELASSSLAPALISGDKVIVITNSGTIFGLDIN 179
                 568*****99888999********************86 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 1.9e-08
       PQQ_3   1 GevlWsv..qlpgpvnssp....avdgglvyvgtgdGtlyAlDa 38 
                 G ++W++  q+p   ++++    a+d ++v +g+ dG+++AlD+
  EGE26315.1 181 GATVWQYatQVPNTSVRGMakplALDARTVLIGGADGRIHALDT 224
                 7899***8877885556667779********************7 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 1.1e-05
       PQQ_3   4 lWsv.........qlpg..pvnsspavdgglvyvgtgdGtlyAlDaet 40 
                 +W++         +++   ++ ++p+v++ ++y++++ G l  +D +t
  EGE26315.1 230 VWTRrvglamgsgEIDQlrDIDGTPTVVDHYLYAASYSGQLAGFDMTT 277
                 566655555555533334478899*********************987 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.084
       PQQ_3  24 vyvgtgdGtlyAlDa 38 
                 v  +++dG ++A++ 
  EGE26315.1 299 VIGSSTDGDVVAFNR 313
                 445566*******86 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.0048
       PQQ_3   1 GevlWsv.qlpgpvnsspavdgglvyvgtgdGtlyAl 36 
                 Ge lW+  +l +++ + p++ g ++ vg+ dG ++ l
  EGE26315.1 316 GEKLWENhDLKYRGLTNPVTIGTYIAVGDADGVVHIL 352
                 999****999**99999***************99866 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 0.43
       PQQ_3  21 gglvyvgtgdGtly 34 
                 ++++y+ + dG ++
  EGE26315.1 375 NNRLYAQSADGVVT 388
                 68899999999987 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   6.4e-05      0.23       7     108 ..     116     223 ..     114     228 .. 0.84
   2 !    6.6   0.1    0.0012       4.4      56     140 ..     299     384 ..     291     389 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.4e-05
   WD40_like   7 diskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillsllenee.......evenekieedistvkviddklliG 98 
                  i+ +gs+ + G ++ k+  l+ +++    +ve  + S +   l+++d+++v t+ Gti   +++ +        +v n+++         +   +liG
  EGE26315.1 116 GIDDQGSVAVIGTRSGKLIALDARTGAARWVVELASSS-LAPALISGDKVIVITNSGTIFGLDINSGAtvwqyatQVPNTSVRGMAKPLALDARTVLIG 213
                 56778999999999999999999999998888766655.5678****************999999998666666677888888888888899999**** PP

   WD40_like  99 tnkGsiyvfs 108
                 +  G i+ ++
  EGE26315.1 214 GADGRIHALD 223
                 *******875 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0012
   WD40_like  56 ilvvtlDGtill.slleneeevenekie.edistvkviddklliGtnkGsiyvfskdlqleevllgqsseIkeikiennkiysLses 140
                 ++  + DG ++    ++ e+  en++++   ++   +i+  +++G   G +++++++    +   + +  + +++++nn++y+ s +
  EGE26315.1 299 VIGSSTDGDVVAfNRMTGEKLWENHDLKyRGLTNPVTIGTYIAVGDADGVVHILNHQ-GQIISRANTKGALTNLTVINNRLYAQSAD 384
                 555677776654145666667777777734577777889999999999999999999.33444567788899999999999988765 PP

>> SUKH-4  SUKH-4 immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0032        12      72      99 ..     119     146 ..     112     158 .. 0.86
   2 ?    4.0   0.1     0.013        47      36     106 ..     222     290 ..     194     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0032
      SUKH-4  72 eaggllvLGalesaslvldpgtGaVlav 99 
                 + g+++v+G+ ++  ++ld++tGa  +v
  EGE26315.1 119 DQGSVAVIGTRSGKLIALDARTGAARWV 146
                 568899*****************97665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.013
      SUKH-4  36 L.vevGlPdlqllaeeeeaavadlelvaaerseelpaeaggllvLGalesaslvldpgtGaVlavdleeeer 106
                 L +++G P+   ++ +   a +  e ++  +++  p+ ++++l  ++++++  + d  tG+ ++v++ +++ 
  EGE26315.1 222 LdTMTGAPV---WTRRVGLAMGSGEIDQLRDIDGTPTVVDHYLYAASYSGQLAGFDMTTGRTMFVSELSSTK 290
                 447788888...77766777788889999999999*************9999999*****999999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3196.31
//
Query:       EGE26316.1  [L=277]
Description: hypothetical protein EA1_05607 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-31  110.0  10.7    1.7e-31  109.4  10.7    1.2  1  TPR_21    Tetratricopeptide repeat-like domain
      3e-05   23.6   3.1      0.021   14.2   0.3    2.1  2  TPR_MalT  MalT-like TPR region
    0.00044   20.2   0.2       0.12   12.6   0.1    2.8  2  TPR_8     Tetratricopeptide repeat
     0.0082   16.6   3.5       0.18   12.3   0.3    2.9  3  TPR_19    Tetratricopeptide repeat
      0.009   15.7   0.2        5.7    6.7   0.1    2.7  2  TPR_11    TPR repeat
  ------ inclusion threshold ------
      0.034   14.4   2.5       0.36   11.2   0.2    2.4  2  TPR_12    Tetratricopeptide repeat
      0.044   14.0   0.1       0.14   12.4   0.1    1.8  1  DUF2508   Protein of unknown function (DUF2508)
       0.11   13.4   1.9        2.2    9.3   0.0    3.3  4  TPR_14    Tetratricopeptide repeat
       0.15   12.1   0.1       0.44   10.6   0.1    1.7  2  PAS       PAS fold
       0.19   11.7   7.4       0.74    9.7   0.2    3.3  3  YfdX      YfdX protein
          3    8.2   4.7         13    6.2   0.1    3.5  4  TPR_2     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4  10.7   1.1e-34   1.7e-31       7     192 ..      23     230 ..      20     231 .. 0.92

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 1.1e-34
      TPR_21   7 ngklilvgvvlalvglaGwqgwqdyqeeqaeeAsalYqqlqeave...................akdaakakeaaeeladeyggtaYaalaaLllAkaa 86 
                 +g+ i+ +v+l+l+ ++Gwq++q++  +  + A+++Y ++    e                   a++++++   +++l++++g+t Ya +a +++A+++
  EGE26316.1  23 HGEKIIYAVLLVLAVFFGWQYYQKNYAKIDTVAADTYTSISVRDErlvqaylnpqldevakqalAEEEKQLFGDIDALVAAHGNTVYAWQALMIKARHQ 121
                 7999************************************984445555666666777777777888888999************************** PP

      TPR_21  87 veagdlaaAkaqLewvle.kakdeelkalarlRLarvllaekkydeAlktLeakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaaleeka..re 182
                  +++dl+ A a+L+++ + + +d++l+a+a++R ar +la+++++ Al+  +++ + af+a+++el GDi+ a++++d+A++aY++A + l e++  r+
  EGE26316.1 122 TNNNDLDGAVATLSQATSiNLDDDGLTAIAKIRHARAMLANGDTNGALSIANEAMPTAFEASRQELLGDIYHAKNEIDNAKSAYTNAWEVLRERQenRA 220
                 *************999874678999******************************************************************999999** PP

      TPR_21 183 llqlKlddLa 192
                 +l lKl++L+
  EGE26316.1 221 VLALKLQSLG 230
                 *******997 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   1.3e-05     0.021     189     265 ..      99     174 ..      82     186 .. 0.80
   2 !   10.0   0.2   0.00024       0.4     127     163 ..     187     223 ..     183     229 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
    TPR_MalT 189 el.aresnfhvdwlanaeevrvrlwlaqgdlaaaerwleaaelpsdddnhflelelrnlarvllalgrydeAleller 265
                 +l a+  n   +w+a + ++r +     +dl+ a++ l++a+    dd+ +  + ++ +ar++la g++  Al++ ++
  EGE26316.1  99 ALvAAHGNTVYAWQALMIKARHQ--TNNNDLDGAVATLSQATSINLDDDGLTAIAKIRHARAMLANGDTNGALSIANE 174
                 55133344456888887777754..7899************99999999************************99876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00024
    TPR_MalT 127 lladllyEwndLeeAeqhlqeGielleqlepeaalda 163
                 ll+d+++ +n+ + A+ +  +++e+l++ ++++a+ a
  EGE26316.1 187 LLGDIYHAKNEIDNAKSAYTNAWEVLRERQENRAVLA 223
                 68**************************988887755 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.024        39      12      33 ..     122     143 ..     112     144 .. 0.82
   2 !   12.6   0.1   7.4e-05      0.12       6      26 ..     187     207 ..     182     210 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.024
                 HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekaleldpd 33 
                  + +d++ A++++ +a++++ d
  EGE26316.1 122 TNNNDLDGAVATLSQATSINLD 143
                 6889***************976 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 7.4e-05
                 HHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyek 26 
                 +lg+iy+ ++++++Ak++y  
  EGE26316.1 187 LLGDIYHAKNEIDNAKSAYTN 207
                 79****************975 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.2    0.0066        11      29      67 ..     112     152 ..      80     153 .. 0.78
   2 !   12.3   0.3   0.00011      0.18       5      55 ..     125     179 ..     123     191 .. 0.77
   3 !    9.6   0.3   0.00081       1.3       2      49 ..     160     206 ..     159     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0066
      TPR_19  29 llL...AeallalgqldeAealLdalpeedpddaryasLlAk 67 
                  +L   A+ + ++++ld A a+L+++   + d  +  +++Ak
  EGE26316.1 112 QALmikARHQTNNNDLDGAVATLSQATSINLD-DDGLTAIAK 152
                 4444559999999************9998888.555556665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00011
      TPR_19   5 gdyaeAlalleqalqedpk....naearllLAeallalgqldeAealLdalpeed 55 
                 +d++ A+a l+qa + + +     a a+++ A+a+la+g+++ A  + +++++ +
  EGE26316.1 125 NDLDGAVATLSQATSINLDddglTAIAKIRHARAMLANGDTNGALSIANEAMPTA 179
                 799*********9876444112366666699**************9999888766 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00081
      TPR_19   2 laegdyaeAlalleqalqedpknaearl..lLAeallalgqldeAealLd 49 
                 la+gd   Al++  +a    p   ea    lL +++ a +++d A+ +  
  EGE26316.1 160 LANGDTNGALSIANEA---MPTAFEASRqeLLGDIYHAKNEIDNAKSAYT 206
                 89**************...9997777777899*************98765 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0048       7.8       8      26 ..     125     143 ..     122     146 .. 0.88
   2 !    6.7   0.1    0.0035       5.7       1      20 [.     189     208 ..     189     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0048
      TPR_11   8 GkyeeAieaYkkAlkldPd 26 
                 +++++A++ +++A  ++ d
  EGE26316.1 125 NDLDGAVATLSQATSINLD 143
                 89************99865 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0035
      TPR_11   1 GdayyeqGkyeeAieaYkkA 20 
                 Gd+y++++++++A  aY +A
  EGE26316.1 189 GDIYHAKNEIDNAKSAYTNA 208
                 9************8888777 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00022      0.36      16      72 ..     124     176 ..     113     179 .. 0.86
   2 ?    3.0   0.2     0.077   1.3e+02       8      35 ..     187     214 ..     180     231 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
      TPR_12  16 lgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                   ++d A + l +a  i    l +d  lta++ +  +r+ +a g++  Al++ +ea+
  EGE26316.1 124 NNDLDGAVATLSQATSIN---L-DDDGLTAIAKIRHARAMLANGDTNGALSIANEAM 176
                 567899999999998888...4.5666****************************98 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.077
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarr 35 
                  l++++++  + d A + +  a e+ r+
  EGE26316.1 187 LLGDIYHAKNEIDNAKSAYTNAWEVLRE 214
                 5788888888888888888877777655 PP

>> DUF2508  Protein of unknown function (DUF2508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.5e-05      0.14      14      43 ..     183     212 ..     179     225 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.5e-05
     DUF2508  14 edeeLleeIektkeelesakslfensvDls 43 
                   +eLl  I+ +k+e+++aks+  n+ ++ 
  EGE26316.1 183 SRQELLGDIYHAKNEIDNAKSAYTNAWEVL 212
                 579**********************99943 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       5.3   8.6e+03      37      40 ..      82      85 ..      67     103 .. 0.57
   2 ?    9.3   0.0    0.0014       2.2       2      37 ..     112     147 ..     110     158 .. 0.84
   3 ?    1.9   0.1      0.32   5.3e+02       8      27 ..     156     175 ..     149     185 .. 0.86
   4 ?   -1.5   0.0       3.9   6.4e+03       7      27 ..     188     208 ..     181     224 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.3
      TPR_14 37 awll 40
                a  +
  EGE26316.1 82 AKQA 85
                2222 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0014
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaea 37 
                 +al+  a+   ++ d+d+A+a l +a + + dd+ +
  EGE26316.1 112 QALMIKARHQTNNNDLDGAVATLSQATSINLDDDGL 147
                 567777899999*****************9998754 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.32
      TPR_14   8 aeallalGdpdeAiallrra 27 
                 a+a+la+Gd+ +A+ ++++a
  EGE26316.1 156 ARAMLANGDTNGALSIANEA 175
                 8999******9999888876 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 3.9
      TPR_14   7 laeallalGdpdeAiallrra 27 
                 l++++ a  + d A  ++  a
  EGE26316.1 188 LGDIYHAKNEIDNAKSAYTNA 208
                 566666666666666555444 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.8   4.5e+03      16      32 ..      64      80 ..      59     109 .. 0.62
   2 ?   10.6   0.1   0.00027      0.44      18      75 ..     164     221 ..     155     229 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.8
                EEETTSBEEEECHHHHH CS
         PAS 16 vvDedgrilyvNaaaee 32
                v+De+ +  y N+   e
  EGE26316.1 64 VRDERLVQAYLNPQLDE 80
                55555555555554433 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00027
                 ETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH.HHHHHHHHHHHHTT-ECCC CS
         PAS  18 DedgrilyvNaaaeellGlsreevlgkslldliheedda.elaelleqlleqgeesrag 75 
                 D +g  + +N+a+ + +  sr+e+lg  +       d+a   +   +++l++++e+ra+
  EGE26316.1 164 DTNGALSIANEAMPTAFEASRQELLGDIYHAKNEI-DNAkSAYTNAWEVLRERQENRAV 221
                 789***********************999988865.55558888888888888888776 PP

>> YfdX  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.044        72      72      98 ..     112     138 ..      96     141 .. 0.67
   2 ?    9.7   0.2   0.00046      0.74       1      28 [.     149     176 ..     149     187 .. 0.88
   3 ?    1.2   0.1      0.19   3.1e+02     110     137 ..     198     225 ..     185     234 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.044
                 HHHHHHHHHHHHTT-HHHHHHHHHHTT CS
        YfdX  72 kaaikkanellkkgdtqaArelLkllg 98 
                 +a + ka+ + +++d ++A ++L ++ 
  EGE26316.1 112 QALMIKARHQTNNNDLDGAVATLSQAT 138
                 555556666666666666666666654 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00046
                 HHHHHHHHHHHHCTT-HHHHHHHHHHHH CS
        YfdX   1 AlrdiqkArlaldqgdtkeAkkllekAq 28 
                 A+++i++Ar+ l++gdt +A++  ++A 
  EGE26316.1 149 AIAKIRHARAMLANGDTNGALSIANEAM 176
                 799*******************999985 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHHHHHTT-HHHHHHHHH CS
        YfdX 110 LatypaavkkAaelleegkyyeAkeaLk 137
                 +++ + a + A e l e++ + A +aLk
  EGE26316.1 198 IDNAKSAYTNAWEVLRERQENRAVLALK 225
                 3334444444444444444444444443 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.4       3.8   6.2e+03      12      19 ..      43      50 ..      41      50 .. 0.81
   2 ?    1.8   0.0      0.21   3.4e+02       3      31 ..     113     141 ..     111     144 .. 0.81
   3 ?   -1.6   0.0       2.4     4e+03       8      27 ..     156     175 ..     156     176 .. 0.79
   4 ?    6.2   0.1    0.0078        13       6      27 ..     187     208 ..     184     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.8
       TPR_2 12 yklgdyee 19
                y++++y++
  EGE26316.1 43 YYQKNYAK 50
                89999986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.21
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 al+  ++   +++d++ A++ + +A +++
  EGE26316.1 113 ALMIKARHQTNNNDLDGAVATLSQATSIN 141
                 5666677778899************9988 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.4
       TPR_2   8 GlayyklgdyeeAleafekA 27 
                 ++a +++gd + Al   ++A
  EGE26316.1 156 ARAMLANGDTNGALSIANEA 175
                 67889999999999877766 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0078
       TPR_2   6 nlGlayyklgdyeeAleafekA 27 
                  lG++y ++++ + A+ a+  A
  EGE26316.1 187 LLGDIYHAKNEIDNAKSAYTNA 208
                 69*****************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1864.79
//
Query:       EGE26317.1  [L=422]
Description: histidyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-44  151.9   0.0    3.1e-44  151.5   0.0    1.2  1  tRNA-synt_His   Histidyl-tRNA synthetase
    1.8e-27   96.4   0.0    4.9e-27   95.0   0.0    1.6  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    1.9e-09   37.6   0.1    1.8e-08   34.4   0.0    2.4  3  HGTP_anticodon  Anticodon binding domain
  ------ inclusion threshold ------
      0.032   13.3   0.0        1.2    8.1   0.0    2.3  3  tRNA-synt_2     tRNA synthetases class II (D, K and N)


Domain annotation for each model (and alignments):
>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5   0.0   6.9e-48   3.1e-44       1     310 []       9     319 ..       9     319 .. 0.86

  Alignments for each domain:
  == domain 1  score: 151.5 bits;  conditional E-value: 6.9e-48
                    T---EETCHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHHCTTSTCCHH....HS-EEE-....T.TSSEEEE-SSSHHHHHH.HHHHHHHTS CS
  tRNA-synt_His   1 glrdllpeeaekieelrrrlldlfeswGYelVspPllEyldslltgagedld....qtfklvD....q.sgrllglRaDiTpqvaR.iaahrlnre 86 
                    g++d+lpe+  ++++++r+l+++++s+GY+++++Pl+E ++ + +g+ge++d    ++f +v       +g++  lR++ T+  +R i+ h+l r 
     EGE26317.1   9 GFNDVLPEQTPAWRAMERTLIEVMDSYGYSQIRLPLVEETQLFARGVGEATDivekEMFGVVHggnkGdEGSSFTLRPEGTAGCVRaIVEHNLTRG 104
                    899********************************************9999888878***9853322236889*************44567899** PP

                    S-EEEEEEEEEEESS-SSTT--CCEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHCTS.SSEEEEEEETCHHHHHHHHTT--HHHHHHHHHHHHCT CS
  tRNA-synt_His  87 rplRlcYaGsvlrtrpdglgrsreplQvGaEliGaegleadlEvlslllealeaaagv.kelrldlghvglvralleaaglsesleeallaalark 181
                       +l+Y G+++r ++ + gr r++ Q+G+E +Gae ++ad+E++ + +++++  +g+ ++++l+l+  g  +   e    + + ++al+++l+++
     EGE26317.1 105 DTPKLWYLGPMFRYERPQKGRYRQFHQLGVEYFGAELPDADAELIAMTYHMWQ-KLGIgEHVTLQLNTLGETD---E----RVAYKSALVEYLTTH 192
                    ****************************************************7.9997699***999998887...3....445788999999998 PP

                    -HHHHHHHHHCCTTHHHCCHCC...HCCHCCCHHHHCHCCHCTHHHHHHHHHHHHHHHHHHHHHHHH-TTEEE-TT--TTTTT--SEEEEEEETT- CS
  tRNA-synt_His 182 dlaelkelaaeaglkealrellkalelygdaevleealealaaapalqaaldeleelaallealakpevrvtlDlaelrgyeYytGlvFaayaegv 277
                    + a l++  ++ +l+++ +++l++    ++ +++ +++ +l +    +a l+++e+++++l al+   +++ ++  ++rg++Yy+++vF+ ++++ 
     EGE26317.1 193 QEA-LDDDSKR-RLNTNPLRILDSK--DENTQQILKNAPKLGEF-LGEASLAHFEKVQNYLSALG---ISFEINDKLVRGLDYYNKTVFEWVTDKL 280
                    755.4554443.5888888998875..44555666666778666.45999*************96...*************************987 PP

                    SS..-SEEEEEECTTTGGG.T-...--EEEEEEEEHHHH CS
  tRNA-synt_His 278 gq..aiarGGrYdelgaaf.gr...arpAtGfsldleal 310
                    g+  ++ +GGrYd+l++ + g+   ++pA+Gf++ le+l
     EGE26317.1 281 GSqaTVCGGGRYDGLVGIIkGNaeqSEPAVGFAMGLERL 319
                    74459************9986433388*********997 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   1.1e-30   4.9e-27       6     178 ..      77     326 ..      74     327 .. 0.95

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 1.1e-30
                   TTSEEEEE-SSSHHHHHHHHHHHEEEBGGSSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   6 rndreyiLkPtneetfvelirdevlrskrLPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefraii 102
                   +++ +++L+P++++++v++i ++ l   + P kl+++++++R+E++ ++G  R+r+Fhq + + f+ae   +d +++li  +++++++lg+ +++++
    EGE26317.1  77 DEGSSFTLRPEGTAGCVRAIVEHNLTRGDTP-KLWYLGPMFRYERP-QKG--RYRQFHQLGVEYFGAEL--PDADAELIAMTYHMWQKLGIGEHVTL 167
                   56789******************99776677.9*************.***..**************987..************************** PP

                   EEGTTSC.......................................................................................... CS
                   xxxxxxx.......................................................................................... RF
  tRNA-synt_2b 103 elmsaks.......................................................................................... 109
                   +l+  ++                                                                                          
    EGE26317.1 168 QLNTLGEtdervayksalveyltthqealdddskrrlntnplrildskdentqqilknapklgeflgeaslahfekvqnylsalgisfeindklvrg 264
                   **876668899************************************************************************************** PP

                   BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 110 adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimicaaigveRllsaileq 178
                   +dy++k++fe+v+ +l+++  +++ ++++++l+  +++++     ++ ++ ++++a+g+eRl+++i ++
    EGE26317.1 265 LDYYNKTVFEWVTDKLGSQA-TVCGGGRYDGLVGIIKGNA-----EQSEP-AVGFAMGLERLMLLIDAV 326
                   ********************.************9999988.....77788.99***********99765 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1     5e+03      30      57 ..     137     165 ..     125     200 .. 0.68
   2 ?   -0.6   0.0      0.32   1.5e+03      18      36 ..     241     259 ..     232     267 .. 0.85
   3 !   34.4   0.0   4.1e-12   1.8e-08      24      85 ..     357     417 ..     337     419 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
                     SEEEEES.SSSTHHHHHHHHHHTT-SEEE CS
  HGTP_anticodon  30 irveldd.snesigkkireadllgipfav 57 
                     + +el d ++e i   ++ +++lgi   v
      EGE26317.1 137 FGAELPDaDAELIAMTYHMWQKLGIGEHV 165
                     55666666777777777777777775444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.32
                     HHHHHHHHHTTTSEEEEES CS
  HGTP_anticodon  18 akklaeeLraagirveldd 36 
                      +k+++ L+a gi+ e++d
      EGE26317.1 241 FEKVQNYLSALGISFEIND 259
                     5799**********99988 PP

  == domain 3  score: 34.4 bits;  conditional E-value: 4.1e-12
                     HHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETT CS
  HGTP_anticodon  24 eLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsld 85 
                     +Lr++++rv++  s+  ++ ++++ad+ g  ++v++ e+e++ +++t+++++t+eq+r ++d
      EGE26317.1 357 RLRQDNLRVKMA-SATGLKSQMKKADKSGAAYTVIIAEDEVNANQITIKTMATGEQRRAPID 417
                     79999*****95.99**************************99**************99987 PP

>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.1     5e+03      34      53 ..      30      49 ..      26      55 .. 0.83
   2 ?    8.1   0.0   0.00028       1.2      88     196 ..     103     205 ..      97     282 .. 0.66
   3 ?    2.6   0.0     0.013        57     282     298 ..     307     323 ..     298     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.1
                 HHHHHTT-EE----SEESS- CS
                 xxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 34 kyleengfieietPiLsksd 53
                 +++++ g+ +i  P++ +++
   EGE26317.1 30 EVMDSYGYSQIRLPLVEETQ 49
                 689999******99988775 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00028
                  HCTHSEEEEEEEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHH.HHTS- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  tRNA-synt_2  88 vagidrvfqiaraFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaiek.lneig 184
                   +   + + ++++FR E+ ++ r   +F q+ +e   +e  d    l  +  ++++++  ++ ++++     + ++l ++ +r+ yk a+ + l+ ++
   EGE26317.1 103 RGDTPKLWYLGPMFRYERPQKGRYR-QFHQLGVEYFGAELPDADAELIAMTYHMWQKL--GIGEHVT----LQLNTLGETDERVAYKSALVEyLTTHQ 193
                  56677999****************9.*********99999999999999999999999..4433333....333466677789999998755145555 PP

                  SS--HHHHHHHH CS
                  xxxxxxxxxxxx RF
  tRNA-synt_2 185 kdldkaderalv 196
                  + ld + +r l 
   EGE26317.1 194 EALDDDSKRRLN 205
                  555555444433 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.013
                  -SEEEEEEEHHHHHHHH CS
                  xxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 282 pphgGlglGldRlvmll 298
                   p  G+++Gl+Rl+ l+
   EGE26317.1 307 EPAVGFAMGLERLMLLI 323
                  5889********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3282.25
//
Query:       EGE26318.1  [L=318]
Description: hypothetical protein EA1_05617 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2326.83
//
Query:       EGE26319.1  [L=371]
Description: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-130  434.3   2.0   3.7e-130  434.1   2.0    1.0  1  GcpE      GcpE protein


Domain annotation for each model (and alignments):
>> GcpE  GcpE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.1   2.0  2.1e-134  3.7e-130       1     350 [.      12     353 ..      12     354 .. 0.99

  Alignments for each domain:
  == domain 1  score: 434.1 bits;  conditional E-value: 2.1e-134
                 .--EEETTEEESTTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHHTT-SS-EEEEE-SSCHHHHHHHHCC-SEE CS
        GcpE   1 trevkvgkvkiGgeapiavqsMtntdtadveatvkqikrlaeaGaelvRvtvqdeeeaealkeikeklkkkglkvplvaDihfnpklaleaaeagvdkv 99 
                 t+++ vg+v+iGg+api+vqsMtnt+t++++atv+qi+r+ +aGa+l+Rv+++++e+++a++eik+++     ++pl+aDihf++k+a+++a++g+d++
  EGE26319.1  12 TKKIYVGNVAIGGDAPISVQSMTNTNTRNIDATVAQIQRCVDAGADLMRVSTPTMESVAAFAEIKKRV-----SIPLIADIHFDHKIAIAVADVGADCL 105
                 789*****************************************************************.....************************** PP

                 EE-TTTSSSTTHHHHHHHHHHHHHHHHT-EEEEEEEGGG--HHHHHHHCC.THHHHHHHHHHHHHHHHHTT--GEEEEEE-SSHHHHHHHHHHHHHH-- CS
        GcpE 100 RiNPGnigdgkkkeekvkelveaakekgtaiRiGvNhGSLskrllskygd.tpealvesalefleilekldfkdiviSlKasnvvvmveayrllaeeld 197
                 RiNPGnig+    ++kvke+v+aa++++++iRiGvN+GSL+k+l++ky + t ea++esal++++ile+l+f++ +iS+Kasnv+ +++ayrl+++++d
  EGE26319.1 106 RINPGNIGN----DQKVKEVVAAARHHNVPIRIGVNAGSLEKDLQKKYREpTGEAMLESALRHIDILENLNFQNYKISVKASNVFLTLDAYRLISAQID 200
                 *********....9**********************************9999*********************************************** PP

                 S-EEE--TT-ECHHHHHHHHHHHHHHHHHTT--SEE---ECS-CCHHHHHHHHHHHHTTS--SS-EEEE----TTS-CHHHHHHHHHHHHCCCHHCG-E CS
        GcpE 198 yplHlGvTEAGegedgriksavgigaLLaegiGdTiRvSLtedpeeEvkvakeiLqalrlrksktelisCPsCgRtlfdlqelveeveealehlkkglk 296
                  plHlGvTEAG  ++g++ksa+++g LL +giGdT+R+SL+++peeE+k++ +iL++l++r++++++i+CPsC+R++fd++++++e+e++le+++++l+
  EGE26319.1 201 NPLHLGVTEAGVYRTGTVKSAIALGGLLLDGIGDTMRISLAAAPEEEIKIGFDILKSLGIRSNGVNFIACPSCSRQEFDVIKVMNELEARLEDIREPLD 299
                 *************************************************************************************************** PP

                 EEEESSTCCHHHHCCCSSEEEEEBTTCEEEEETTEEEECEESSCHHHHHHHHHH CS
        GcpE 297 iavmGCiVNGpgEaadAdlGivggkgkvslykkkevvkkvpeeeavdellelik 350
                 ++v+GC VNGpgEa++A +G+vg++ +  +yk++   + ++++++vde+ ++++
  EGE26319.1 300 LSVIGCKVNGPGEAKEATIGVVGASPNSLVYKHGAKSHLIDTKKLVDEIEAMVR 353
                 ************************************************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2750.76
//
Query:       EGE26320.1  [L=186]
Description: putative type IV pilus biogenesis protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-09   37.0   4.2     0.0011   19.2   0.0    4.5  4  TPR_17    Tetratricopeptide repeat
    3.8e-08   33.8   1.3     0.0049   17.5   0.0    3.1  3  TPR_16    Tetratricopeptide repeat
    4.5e-08   33.5   7.0    0.00067   20.1   2.6    3.3  3  TPR_19    Tetratricopeptide repeat
      1e-07   31.5  12.9       0.05   13.7   0.3    5.8  5  TPR_2     Tetratricopeptide repeat
    7.6e-07   28.9  14.5      0.051   13.8   0.1    5.5  6  TPR_8     Tetratricopeptide repeat
    1.6e-06   28.4   5.4      0.017   15.9   0.7    4.1  5  TPR_14    Tetratricopeptide repeat
      5e-06   26.6   0.5     0.0015   18.7   0.0    2.9  3  TPR_9     Tetratricopeptide repeat
    1.8e-05   24.3   4.4     0.0048   16.5   0.2    3.1  3  TPR_11    TPR repeat
      2e-05   24.2   9.4        0.2   11.5   0.1    5.2  6  TPR_1     Tetratricopeptide repeat
    2.2e-05   24.8   5.7        6.4    7.6   0.0    4.9  4  TPR_6     Tetratricopeptide repeat
    7.6e-05   22.9   6.5      0.072   13.4   2.6    4.5  5  TPR_12    Tetratricopeptide repeat
      0.006   16.4   6.8        0.6   10.1   0.2    4.7  6  TPR_10    Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.8   3.2          2    8.8   2.3    2.6  3  TPR_20    Tetratricopeptide repeat
      0.023   14.1   1.7      0.038   13.4   1.7    1.6  1  TPR_MalT  MalT-like TPR region
       0.06   13.0   0.1       0.12   12.0   0.1    1.5  1  Sec16_C   Sec23-binding domain of Sec16
       0.25   11.3   5.3        1.5    8.8   1.7    2.4  2  YfdX      YfdX protein


Domain annotation for each model (and alignments):
>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0024       2.7       7      34 .]      16      43 ..      16      43 .. 0.96
   2 !    6.8   0.0    0.0089       9.9       4      28 ..      47      71 ..      45      80 .. 0.82
   3 !   19.2   0.0   9.9e-07    0.0011       1      32 [.      81     112 ..      81     114 .. 0.93
   4 ?    0.6   0.3      0.87   9.7e+02      18      26 ..     134     142 ..     129     173 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0024
      TPR_17  7 eldPnnadaynnLAelllknGdlmtArq 34
                +++P  a   ++ A  ll  G+l++A+q
  EGE26320.1 16 KNNPQLAQIRTQIAISLLDMGKLDQAKQ 43
                689***********************98 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0089
      TPR_17  4 kaleldPnnadaynnLAelllknGd 28
                 al  d   a+ay  LA+++    d
  EGE26320.1 47 AALSADRQFAPAYRTLAKVYQASED 71
                688999999***********97665 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 9.9e-07
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtA 32 
                 l++ka+el+P++  +y  ++ +l + Gdl  A
  EGE26320.1  81 LFEKAIELNPKDMQSYMDYGFYLVQMGDLSGA 112
                 79************************998766 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.87
      TPR_17  18 nLAelllkn 26 
                 n+A++++++
  EGE26320.1 134 NMAYIYYHQ 142
                 667777643 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   1.5   0.00032      0.36       3      43 ..      28      65 ..      26      73 .. 0.87
   2 !   17.5   0.0   4.3e-06    0.0049      15      59 ..      77     118 ..      71     121 .. 0.95
   3 ?    0.7   0.0      0.76   8.5e+02      12      27 ..     153     168 ..     151     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00032
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgda 43
                 a ++l+ g+ d+A  +l+aal +d    + a A+  l+ +
  EGE26320.1 28 IAISLLDMGKLDQAKQQLDAALSAD---RQFAPAYRTLAKV 65
                5889*********************...8888888877766 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.3e-06
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 +A++++e a++++   P + ++++ +g  + + g+l +A+ ++++
  EGE26320.1  77 KAQRLFEKAIELN---PKDMQSYMDYGFYLVQMGDLSGALIYFDK 118
                 7************...************************99975 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.76
      TPR_16  12 dyddAaaaleaalkrd 27 
                 dy  A  ale+al ++
  EGE26320.1 153 DYNNAKSALERALISG 168
                 7899999****99776 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   2.6     6e-07   0.00067      21      64 ..      18      62 ..      16      69 .. 0.83
   2 !   10.8   0.0    0.0005      0.56       9      44 ..      77     112 ..      74     118 .. 0.93
   3 ?    2.8   0.0      0.15   1.6e+02       6      25 ..     153     172 ..     150     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6e-07
      TPR_19 21 dpknaearllLAeallalgqldeAealLdalpeedpdd.aryasL 64
                +p+ a +r + A+ ll +g ld+A++ Lda++ +d++  ++y++L
  EGE26320.1 18 NPQLAQIRTQIAISLLDMGKLDQAKQQLDAALSADRQFaPAYRTL 62
                677788888999999999999999999999999999976888877 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0005
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeA 44 
                  A++l+e+a++ +pk+    +++   l+++g+l  A
  EGE26320.1  77 KAQRLFEKAIELNPKDMQSYMDYGFYLVQMGDLSGA 112
                 79******************************9988 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.15
      TPR_19   6 dyaeAlalleqalqedpkna 25 
                 dy +A ++le+al    +++
  EGE26320.1 153 DYNNAKSALERALISGTQHD 172
                 999********985555555 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00037      0.41       6      32 ..      27      53 ..      22      55 .. 0.89
   2 !   13.7   0.3   4.4e-05      0.05      18      34 .]      76      92 ..      56      92 .. 0.87
   3 ?    6.0   0.0     0.013        15       4      26 ..      96     118 ..      94     118 .. 0.90
   4 ?    0.7   0.3      0.68   7.6e+02       6      14 ..     134     142 ..     131     148 .. 0.65
   5 ?    4.0   0.0      0.06        68      15      28 ..     152     165 ..     150     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
       TPR_2  6 nlGlayyklgdyeeAleafekAleldP 32
                +++ +++ +g++++A++ +++Al+ d 
  EGE26320.1 27 QIAISLLDMGKLDQAKQQLDAALSADR 53
                67999******************9876 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.4e-05
       TPR_2 18 eeAleafekAleldPnn 34
                 +A ++fekA+el+P++
  EGE26320.1 76 TKAQRLFEKAIELNPKD 92
                69*************86 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.013
       TPR_2   4 lynlGlayyklgdyeeAleafek 26 
                 ++  G  + ++gd+  Al +f+k
  EGE26320.1  96 YMDYGFYLVQMGDLSGALIYFDK 118
                 778899***************97 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.68
       TPR_2   6 nlGlayykl 14 
                 n++++yy++
  EGE26320.1 134 NMAYIYYHQ 142
                 667777765 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.06
       TPR_2  15 gdyeeAleafekAl 28 
                 +dy+ A+ a+e+Al
  EGE26320.1 152 DDYNNAKSALERAL 165
                 79***********8 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   4.6e-05     0.051       2      33 ..      23      54 ..      22      55 .. 0.90
   2 !   10.5   0.1   0.00053      0.59      18      34 .]      76      92 ..      56      92 .. 0.86
   3 ?    4.0   0.1     0.065        73       2      26 ..      94     118 ..      94     118 .. 0.91
   4 ?   -2.2   0.1       6.3   7.1e+03      16      20 ..     142     146 ..     134     148 .. 0.54
   5 !    7.3   0.1    0.0056       6.3      14      28 ..     151     165 ..     150     165 .. 0.92
   6 ?   -1.2   0.0         3   3.3e+03      16      29 ..     170     183 ..     169     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.6e-05
                CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyekaleldpd 33
                ++  +++  +l++g++++Ak+ +  al++d++
  EGE26320.1 23 QIRTQIAISLLDMGKLDQAKQQLDAALSADRQ 54
                677889999********************986 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00053
                HHHHHHHHHHHHHHHH. CS
       TPR_8 18 eeAkeyyekaleldpdn 34
                 +A+  +eka+el+p++
  EGE26320.1 76 TKAQRLFEKAIELNPKD 92
                68999**********96 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.065
                 CHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyek 26 
                 ++y+  g  + ++gd+  A  y+ k
  EGE26320.1  94 QSYMDYGFYLVQMGDLSGALIYFDK 118
                 589999999************9987 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 6.3
                 -HHHH CS
       TPR_8  16 dyeeA 20 
                 +ye+A
  EGE26320.1 142 QYEAA 146
                 45555 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0056
                 TT-HHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekal 28 
                 + dy++Ak+++e+al
  EGE26320.1 151 KDDYNNAKSALERAL 165
                 68***********97 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 3
                 -HHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekale 29 
                 +++e k++y k l+
  EGE26320.1 170 QHDEIKKSYDKLLS 183
                 57888999999885 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.7   1.5e-05     0.017       5      43 ..      26      64 ..      22      65 .. 0.91
   2 !   13.6   0.1   8.2e-05     0.092       3      38 ..      58      96 ..      56     101 .. 0.82
   3 ?    2.9   0.0      0.23   2.6e+02       3      25 ..      95     117 ..      93     118 .. 0.87
   4 ?   -0.9   0.0       3.9   4.3e+03      17      28 ..     154     165 ..     135     178 .. 0.66
   5 ?    0.2   0.0       1.6   1.8e+03       9      30 ..     163     184 ..     155     186 .] 0.68

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-05
      TPR_14  5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43
                 ++a  ll  G++d+A + l++al+++ ++a a++ la+
  EGE26320.1 26 TQIAISLLDMGKLDQAKQQLDAALSADRQFAPAYRTLAK 64
                578999***************************999997 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 8.2e-05
      TPR_14  3 allalaeallalGd...pdeAiallrralalaPddaeaw 38
                a++ la+++ a++d     +A +l+++a++l+P+d + +
  EGE26320.1 58 AYRTLAKVYQASEDathQTKAQRLFEKAIELNPKDMQSY 96
                8999*******999664556**************97655 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.23
      TPR_14   3 allalaeallalGdpdeAiallr 25 
                  +++++ +l + Gd+ +A+ +++
  EGE26320.1  95 SYMDYGFYLVQMGDLSGALIYFD 117
                 58899*************98876 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 3.9
      TPR_14  17 pdeAiallrral 28 
                 +  A  +l+ral
  EGE26320.1 154 YNNAKSALERAL 165
                 334677777776 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 1.6
      TPR_14   9 eallalGdpdeAiallrralal 30 
                 +al    ++de  + ++++l++
  EGE26320.1 163 RALISGTQHDEIKKSYDKLLSD 184
                 4444444889999999998876 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.6     0.042        47      26      63 ..      19      56 ..      16      66 .. 0.78
   2 !   18.7   0.0   1.3e-06    0.0015      13      52 ..      77     116 ..      62     118 .. 0.86
   3 ?   -0.9   0.0       1.7   1.9e+03      43      57 ..     152     166 ..     151     177 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.042
       TPR_9 26 PddpeerrdRGlllaqlGclsaAladLeaylalapdap 63
                P+ ++ r   ++ l  +G l +A + L+a+l+ + + +
  EGE26320.1 19 PQLAQIRTQIAISLLDMGKLDQAKQQLDAALSADRQFA 56
                6666677778888999***************8877544 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.3e-06
       TPR_9  13 ralavverllllaPddpeerrdRGlllaqlGclsaAladL 52 
                 +a +  e  + l+P+d + ++d G+ l+q+G+ls+Al  +
  EGE26320.1  77 KAQRLFEKAIELNPKDMQSYMDYGFYLVQMGDLSGALIYF 116
                 66677788999*************************9776 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.7
       TPR_9  43 GclsaAladLeayla 57 
                 ++++ A  +Le++l 
  EGE26320.1 152 DDYNNAKSALERALI 166
                 578888889998883 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   4.3e-06    0.0048       5      40 ..      33      68 ..      31      69 .. 0.94
   2 !    8.5   0.0    0.0014       1.6      16      42 .]      81     107 ..      75     107 .. 0.81
   3 ?   -3.4   0.2       7.5   8.4e+03      35      39 ..     136     140 ..     134     142 .. 0.50

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.3e-06
      TPR_11  5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40
                 + Gk+++A +++ +Al  d ++a ay  L+++y++
  EGE26320.1 33 LDMGKLDQAKQQLDAALSADRQFAPAYRTLAKVYQA 68
                689*******************************85 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0014
      TPR_11  16 aYkkAlkldPdnaeayynLGlayykqG 42 
                  ++kA++l+P++   y   G+ + ++G
  EGE26320.1  81 LFEKAIELNPKDMQSYMDYGFYLVQMG 107
                 579*********999988887777766 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 7.5
      TPR_11  35 Glayy 39 
                 +++yy
  EGE26320.1 136 AYIYY 140
                 55555 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00032      0.35       3      33 ..      24      54 ..      22      55 .. 0.86
   2 ?   -1.9   0.0       3.2   3.6e+03       1      13 [.      56      68 ..      56      71 .. 0.76
   3 !   11.5   0.1   0.00018       0.2      19      34 .]      77      92 ..      76      92 .. 0.89
   4 ?    1.0   0.0      0.38   4.2e+02      12      26 ..     104     118 ..     100     118 .. 0.86
   5 ?   -0.5   0.4       1.1   1.2e+03       7      16 ..     135     142 ..     133     147 .. 0.58
   6 ?    2.1   0.1      0.17   1.9e+02      15      28 ..     152     165 ..     150     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00032
                HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  3 alynlGnayfklgkydeAleyyekALelnPn 33
                +  +++  ++ +gk+d+A +  + AL+ + +
  EGE26320.1 24 IRTQIAISLLDMGKLDQAKQQLDAALSADRQ 54
                567899*******************998765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.2
                HHHHHHHHHHHHH CS
       TPR_1  1 akalynlGnayfk 13
                a a+  l+ +y+ 
  EGE26320.1 56 APAYRTLAKVYQA 68
                5688899999986 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00018
                HHHHHHHHHHHHSTTH CS
       TPR_1 19 eAleyyekALelnPnn 34
                +A   +ekA+elnP++
  EGE26320.1 77 KAQRLFEKAIELNPKD 92
                78889*********96 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.38
                 HHTT-HHHHHHHHHH CS
       TPR_1  12 fklgkydeAleyyek 26 
                  ++g++  Al y++k
  EGE26320.1 104 VQMGDLSGALIYFDK 118
                 589*******99987 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 1.1
                 HHHHHHHTT- CS
       TPR_1   7 lGnayfklgk 16 
                 ++++y++  +
  EGE26320.1 135 MAYIYYH--Q 142
                 5555554..4 PP

  == domain 6  score: 2.1 bits;  conditional E-value: 0.17
                 T-HHHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekAL 28 
                  +y+ A  + e+AL
  EGE26320.1 152 DDYNNAKSALERAL 165
                 69***********8 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.022        25       5      27 ..      27      49 ..      26      52 .. 0.86
   2 !    7.4   0.1    0.0071       7.9       7      32 ..      63      91 ..      57      92 .. 0.77
   3 ?   -0.9   0.0         3   3.4e+03      12      24 ..     105     117 ..      95     118 .. 0.78
   4 !    7.6   0.0    0.0057       6.4       6      26 ..     135     164 ..     130     186 .] 0.60

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.022
                HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  5 klalsyrklgdtdkAlealerli 27
                ++a s++ +g+ d+A++ l+  +
  EGE26320.1 27 QIAISLLDMGKLDQAKQQLDAAL 49
                5899999999******9998765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0071
                HHHHHH.H..HHHHHHHHHHHHHHHH-TT CS
       TPR_6  7 alsyrk.l..gdtdkAlealerlikeYPd 32
                a+ y++    +  +kA +++e+ i+  P+
  EGE26320.1 63 AKVYQAsEdaTHQTKAQRLFEKAIELNPK 91
                55566533547788***********9997 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3
                 HHHHHHHHHHHHH CS
       TPR_6  12 klgdtdkAleale 24 
                 ++gd + Al +++
  EGE26320.1 105 QMGDLSGALIYFD 117
                 5799999999987 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0057
                 HHHHHHHH.........HHHHHHHHHHHHH CS
       TPR_6   6 lalsyrkl.........gdtdkAlealerl 26 
                 +a+ y+ +         +d+ +A+ aler 
  EGE26320.1 135 MAYIYYHQyeaaksptkDDYNNAKSALERA 164
                 677777767777777764555555555554 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   0.00011      0.12      39      76 ..      16      53 ..       9      54 .. 0.88
   2 !   13.4   2.6   6.4e-05     0.072       2      75 ..      21      89 ..      20      91 .. 0.78
   3 !    9.0   0.3    0.0015       1.7       5      68 ..      58     116 ..      54     123 .. 0.65
   4 ?   -1.4   0.0       2.7     3e+03       7      16 ..     133     142 ..     124     148 .. 0.69
   5 ?   -0.0   0.0      0.99   1.1e+03      22      72 ..     157     165 ..     150     185 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      TPR_12 39 pdhpltattlrnLgrlyralgryeeAlelleealaiae 76
                +++p++a+++  +++ ++ +g++++A + l  al +++
  EGE26320.1 16 KNNPQLAQIRTQIAISLLDMGKLDQAKQQLDAALSADR 53
                68999999999999999999999999999999998877 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 6.4e-05
      TPR_12  2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgr...yeeAlelleealaia 75
                +a++ +++a  l+ +g++d+A + l++al + r+   p       ++r+L+ +y+a+++   + +A++l+e+a+++ 
  EGE26320.1 21 LAQIRTQIAISLLDMGKLDQAKQQLDAALSADRQF-AP-------AYRTLAKVYQASEDathQTKAQRLFEKAIELN 89
                6788889*************************877.34.......56666666666554222569*****9999985 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0015
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 a++ la v+++ ++     ++  ka ++++++  + +p   +++ ++g ++ ++g++  Al ++
  EGE26320.1  58 AYRTLAKVYQASED----ATHQTKAQRLFEKAI-ELNPKDMQSYMDYGFYLVQMGDLSGALIYF 116
                 56567777777777....444444444444443.234556888888888888888888888877 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2.7
      TPR_12   7 nnlaavlrrl 16 
                  n+a +++++
  EGE26320.1 133 ENMAYIYYHQ 142
                 3788888776 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.99
      TPR_12  22 AlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 A + le+a                                          l
  EGE26320.1 157 AKSALERA------------------------------------------L 165
                 33333333..........................................2 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.2   0.00054       0.6       2      31 ..      22      51 ..      21      54 .. 0.90
   2 ?   -2.6   0.0         5   5.6e+03       5      14 ..      59      68 ..      58      72 .. 0.72
   3 ?    1.3   0.0      0.31   3.5e+02      20      31 ..      77      88 ..      74      89 .. 0.86
   4 ?    2.9   0.0     0.098   1.1e+02       4      26 ..      95     117 ..      93     118 .. 0.86
   5 ?    2.0   0.0      0.19   2.1e+02       5      18 ..     132     145 ..     129     148 .. 0.83
   6 ?   -2.3   0.0         4   4.5e+03      17      29 ..     153     165 ..     152     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00054
      TPR_10  2 AsslnNLanalrqrgrydeAealleealai 31
                A +++ +a+ l ++g++d+A + l+ al++
  EGE26320.1 22 AQIRTQIAISLLDMGKLDQAKQQLDAALSA 51
                788999*********************986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5
      TPR_10  5 lnNLanalrq 14
                +  La ++++
  EGE26320.1 59 YRTLAKVYQA 68
                6678888886 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.31
      TPR_10 20 eAealleealai 31
                +A +l+e+a+++
  EGE26320.1 77 KAQRLFEKAIEL 88
                799******986 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.098
      TPR_10   4 slnNLanalrqrgrydeAealle 26 
                 s+ + + +l q+g++ +A+ +++
  EGE26320.1  95 SYMDYGFYLVQMGDLSGALIYFD 117
                 7888999***********98876 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.19
      TPR_10   5 lnNLanalrqrgry 18 
                   N+a +++++++ 
  EGE26320.1 132 IENMAYIYYHQYEA 145
                 579********985 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 4
      TPR_10  17 rydeAealleeal 29 
                 +y+ A   le+al
  EGE26320.1 153 DYNNAKSALERAL 165
                 6788888889998 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.3    0.0018         2      16      79 ..      16      77 ..      14      81 .. 0.82
   2 ?    6.0   0.0     0.013        15       6      42 ..      77     113 ..      71     115 .. 0.84
   3 ?   -2.2   0.0       4.7   5.3e+03      21      30 ..     156     165 ..     142     183 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0018
      TPR_20 16 aanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplva 79
                ++np+  ++r + A  ll  g+ ++A +qL + l++dr++    a ++l k+ +a +++   ++
  EGE26320.1 16 KNNPQLAQIRTQIAISLLDMGKLDQAKQQLDAALSADRQF--APAYRTLAKVYQASEDATHQTK 77
                5799999********************************9..5666677777777666655555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.013
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAl 42 
                 +  + +e+a++ np+d++  +d+   l++ g+   Al
  EGE26320.1  77 KAQRLFEKAIELNPKDMQSYMDYGFYLVQMGDLSGAL 113
                 445567999********************99988886 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.7
      TPR_20  21 dldarldlAl 30 
                 + + +l+ Al
  EGE26320.1 156 NAKSALERAL 165
                 3333333333 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.7   3.4e-05     0.038     132     190 ..      32      88 ..      16     178 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.4e-05
    TPR_MalT 132 lyEwndLeeAeqhlqeGielleqlepeaaldayvllarialaqGdl...eeAetllekaeel 190
                 l+++++L++A+q l++++   +q+     ++ay +la++++a +d+    +A++l+eka el
  EGE26320.1  32 LLDMGKLDQAKQQLDAALSADRQF-----APAYRTLAKVYQASEDAthqTKAQRLFEKAIEL 88 
                 7899*************8888877.....99*************973335799999999776 PP

>> Sec16_C  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00011      0.12     201     238 ..      14      51 ..       3      79 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                 T----CCCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
     Sec16_C 201 kfaglphLlayKllhAavLaelGlvseAqkYcdaiaas 238
                 + +  p+L++++ + A  L ++G++++A++  da  ++
  EGE26320.1  14 PPKNNPQLAQIRTQIAISLLDMGKLDQAKQQLDAALSA 51 
                 34789*************************99998776 PP

>> YfdX  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.7    0.0013       1.5       5      30 ..      26      51 ..      22      94 .. 0.64
   2 ?    3.5   0.1     0.056        62     118     140 ..     143     165 ..     129     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0013
                HHHHHHHHCTT-HHHHHHHHHHHHHH CS
        YfdX  5 iqkArlaldqgdtkeAkkllekAqgk 30
                +q A++ ld+g+ ++Ak++l+ A  +
  EGE26320.1 26 TQIAISLLDMGKLDQAKQQLDAALSA 51
                55566666666666666666655544 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.056
                 HHHHHHHHTT-HHHHHHHHHHHH CS
        YfdX 118 kkAaelleegkyyeAkeaLkeal 140
                 ++Aa+  ++ +y++Ak aL++al
  EGE26320.1 143 YEAAKSPTKDDYNNAKSALERAL 165
                 6788888999**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       923  (0.0514808); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1248.54
//
Query:       EGE26321.1  [L=395]
Description: Cfr family radical SAM protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.7e-16   58.9   0.0    1.5e-15   58.0   0.0    1.5  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   8.5e-20   1.5e-15       2     163 ..     128     303 ..     127     307 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 8.5e-20
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHH...........HTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelka...........ekg.vkevilgggepllypdfvellerlakla....vpgiritve 83 
                  + + gC+l+CsfC++++     g +r+l++ ei+ ++  + +           e++ +++v++g+gepll++d v++   l+  +     +++r+t++
   EGE26321.1 128 SSQVGCALDCSFCSTGK----QGFERDLTPSEIIGQLWVANQsymenvppterENRvTNVVMMGMGEPLLNYDPVVASMSLMLDDhafgLSKRRVTLS 221
                  6789************6....899999999999999988865788899999986666**************************99************* PP

                  ECSSCHGHHHHHHHHHTT-SEEEEEEBSSSHH..HHHHHHTCTSHHHHHHHHHHHHHHTTSET....EEEEEEEBTTTSHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  84 tngtlpdeeklerllelgvdrvslgleaadde..kvlklmnrghtfeevlealeklreagikr....vvdrivglpGendeeleel 163
                  t+g++p  ++ ++ ++     ++++l+a++de    l ++n+++ ++++++a + +     +r    +++ +v+l G+nd++ e+ 
   EGE26321.1 222 TSGVVP--KMYDLAKDID-VALAISLHAPNDElrNELVPINKKYPLKDLIKAAKSYVYDENPRhkkhITIEYVMLAGVNDSD-EHA 303
                  *****6..7777777766.*************65444555566666666666665555555559999*************98.544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2887.65
//
Query:       EGE26322.1  [L=370]
Description: N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-18   65.1   0.0    1.5e-16   60.4   0.1    2.2  2  MTS              Methyltransferase small domain
    4.8e-12   45.9   0.0    2.7e-11   43.5   0.0    1.9  2  Methyltransf_31  Methyltransferase domain
    2.6e-09   36.9   0.0    5.2e-09   35.9   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    1.6e-08   35.1   0.0    5.8e-08   33.3   0.0    2.0  2  Methyltransf_25  Methyltransferase domain
    3.9e-06   26.7   0.2    1.4e-05   24.9   0.2    1.8  1  UPF0020          Putative RNA methylase family UPF0020
    3.6e-05   23.7   0.0      9e-05   22.4   0.0    1.6  1  Methyltransf_18  Methyltransferase domain
    7.8e-05   22.3   0.0    0.00013   21.6   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    0.00011   22.8   0.0     0.0018   19.0   0.0    2.6  2  Methyltransf_12  Methyltransferase domain
    0.00014   21.7   0.0    0.00024   20.9   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
    0.00017   21.0   0.0    0.00028   20.3   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00019   21.1   0.0    0.00036   20.2   0.0    1.4  1  Cons_hypoth95    Conserved hypothetical protein 95
     0.0004   19.8   0.0     0.0007   19.0   0.0    1.3  1  Methyltransf_10  RNA methyltransferase
     0.0005   19.6   0.0     0.0012   18.4   0.0    1.6  1  Methyltransf_4   Putative methyltransferase
     0.0038   17.8   0.0      0.023   15.3   0.0    2.3  2  Methyltransf_11  Methyltransferase domain
     0.0046   16.3   0.0     0.0098   15.2   0.0    1.6  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.012   15.1   0.1      0.037   13.5   0.0    1.8  2  AviRa            RRNA methyltransferase AviRa
      0.014   14.6   0.0      0.033   13.4   0.0    1.5  1  Methyltransf_3   O-methyltransferase
      0.027   14.0   0.0      0.073   12.6   0.0    1.7  2  TrmK             tRNA (adenine(22)-N(1))-methyltransferase
      0.029   13.4   0.1      0.068   12.1   0.0    1.5  2  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
      0.046   13.6   0.0       0.28   11.0   0.0    2.1  1  Methyltransf_23  Methyltransferase domain
      0.048   12.9   0.0       0.08   12.2   0.0    1.3  1  N6_Mtase         N-6 DNA Methylase
       0.06   13.9   0.2        0.2   12.3   0.2    1.9  1  PrmC_N           PrmC N-terminal domain
       0.11   12.2   0.0       0.21   11.3   0.0    1.4  1  DUF938           Protein of unknown function (DUF938)
       0.15   11.8   0.0       0.24   11.1   0.0    1.3  1  Met_10           Met-10+ like-protein


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1     2e-19   1.5e-16      32     130 ..     185     285 ..     171     290 .. 0.87
   2 ?    2.7   0.0      0.11        84     114     137 ..     290     313 ..     284     325 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 2e-19
                 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST.TS-EEEEEE---STTTCHCHHHHHHHHHHHHHH CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeve.ekkfdlivsNPPfhagkatelavaeeliaeAke 127
                  +++lDl++G G +++alak+ p+a+++++d+d+ Ale+a +n+e+++l+  v++++s+++++++ e++++liv+NPP+ +      ++  e+++e ++
  EGE26322.1 185 PERILDLCTGSGCIAIALAKAFPDANIDATDIDKDALEVAWTNVEHHELAhqVNLLESNLFAKLPaENQYELIVTNPPYVDAAV-MAELPPEFLHEPEH 282
                 467*********************************************9989999********98789**********987655.66677777777666 PP

                 HEE CS
         MTS 128 aLk 130
                 aL+
  EGE26322.1 283 ALA 285
                 665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHEEEEEEEEE CS
         MTS 114 elavaeeliaeAkeaLkegGeLli 137
                  l+++++++ +A+++L+++G L++
  EGE26322.1 290 GLDLVHQILYHAPDYLTKDGLLVC 313
                 67899***************9976 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.1   8.1e+02      72      93 ..      60      81 ..      29     101 .. 0.81
   2 !   43.5   0.0   3.6e-14   2.7e-11       5     113 ..     186     317 ..     183     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.1
  Methyltransf_31 72 dekfDlilsnevlnaladpdki 93
                      +++D+++++++ + +a+ ++i
       EGE26322.1 60 LRQYDVVVAQGTTDEFAEAAAI 81
                     389******9999888877665 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 3.6e-14
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsn..............e 82 
                       r+lDl +G+G ++++la +++p+a++   Di+++a+e+A +n ++++l   v++ +++ ++ l+   e +++ li++n              e
       EGE26322.1 186 ERILDLCTGSGCIAIALA-KAFPDANIDATDIDKDALEVAWTNVEHHELAhQVNLLESNLFAkLP--AE-NQYELIVTNppyvdaavmaelppE 275
                      589***************.*******************************************999..45.9********999998888777774 PP

  Methyltransf_31  83 vl....naladpdkile.......eiervlkpggilliedpr 113
                      +l    +ala+ ++ l         ++++l+++g l++e  +
       EGE26322.1 276 FLhepeHALAAGQDGLDlvhqilyHAPDYLTKDGLLVCEVGD 317
                      4466666666666666666666669***********998877 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0     7e-12   5.2e-09     157     233 ..     180     260 ..     175     280 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 7e-12
        PrmA 157 klvkegeevlDvGtGSGiLaiaaak.LgakkvvavDiDevAvkvakeNaelNkveaklev...alseellkeekadvivaN 233
                 +++ + e++lD+ tGSG +aia ak +  +++ a+DiD+ A++va  N+e  ++++++++   +l ++l++e+++++iv N
  EGE26322.1 180 SQLAAPERILDLCTGSGCIAIALAKaFPDANIDATDIDKDALEVAWTNVEHHELAHQVNLlesNLFAKLPAENQYELIVTN 260
                 45667799**************776378899*************************99883334556666799******99 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       7.6   5.6e+03      61      74 ..      59      72 ..      27      86 .. 0.72
   2 !   33.3   0.0   7.8e-11   5.8e-08       1      71 [.     188     260 ..     188     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 7.6
                     STTTEEEEEEESTG CS
  Methyltransf_25 61 edgsfDlvvssgal 74
                     + +++D+vv++g+ 
       EGE26322.1 59 KLRQYDVVVAQGTT 72
                     45678888886554 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 7.8e-11
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBC.CGBSSSTTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgda.edlpfedgsfDlvvss 71 
                      +Ldl++G+G +++alak++++a++ ++Di++++le a +++e+++l  +v++++ ++  +lp  ++++ l+v +
       EGE26322.1 188 ILDLCTGSGCIAIALAKAFPDANIDATDIDKDALEVAWTNVEHHELahQVNLLESNLfAKLPA-ENQYELIVTN 260
                      8******************99**********************99999*******99666885.5699999984 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   1.8e-08   1.4e-05      75     133 ..     207     265 ..     177     279 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.8e-08
                 HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEE.EE--GGG--STTS---EEEE------ CS
     UPF0020  75 aelklygsDldrrvvqgareNaekagvgdlief.sqadaakLrlkegevdvivtnpPYGe 133
                 +++++ + D+d+ +++ a +N e+ ++++++++ ++  +akL+ +e+++++ivtnpPY +
  EGE26322.1 207 PDANIDATDIDKDALEVAWTNVEHHELAHQVNLlESNLFAKLP-AENQYELIVTNPPYVD 265
                 6778999************************972556689***.7889**********76 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.2e-07     9e-05      15      87 ..     185     258 ..     179     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.2e-07
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeee.vdtvv 87 
                       +r++D +t  g ++i+l+k     ++ a+Di + +le a +n+e+++l +++++  s+ ++kl +e+ ++ +v
       EGE26322.1 185 PERILDLCTGSGCIAIALAKAFPDANIDATDIDKDALEVAWTNVEHHELAHQVNLLESNLFAKLPAENqYELIV 258
                      6799*******************************************************999998555466665 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.8e-07   0.00013       3      80 ..     187     262 ..     185     265 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.8e-07
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfe..kviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpP 80 
                       ilDl++G+G  +i++a+ f+  ++ a +i+++ l++a  N e  + ++++ l   ++f  l     e+  ++l+++ pP
       EGE26322.1 187 RILDLCTGSGCIAIALAKAFPdaNIDATDIDKDALEVAWTNVEHHELAHQVNLLESNLFAKLPA---ENQ-YELIVTNPP 262
                      79*****************9633699*****************************999876655...333.577777777 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.4     1e+03      64      77 ..      53      73 ..      11      86 .. 0.69
   2 !   19.0   0.0   2.4e-06    0.0018       1      73 [.     189     260 ..     189     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.4
  Methyltransf_12 64 g.......ssfDlvvasnvlh 77
                              ++D+vva ++  
       EGE26322.1 53 IrfvvtklRQYDVVVAQGTTD 73
                     0444444469****9987765 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 2.4e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvas 73 
                      L++ +G+G ++ al++++pd+++ ++Di+++a+e a +   ++e   +++v+l + +l+ + +  +++ l+v +
       EGE26322.1 189 LDLCTGSGCIAIALAKAFPDANIDATDIDKDALEVAWTNVEHHEL--AHQVNLLESNLFAKLPAeNQYELIVTN 260
                      79999****************************777777777775..557777777777666666788887754 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.3e-07   0.00024      42     124 ..     180     257 ..     165     263 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.3e-07
  Methyltransf_16  42 anelsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvkvevLdWgeeleedllekeevDli 124
                      ++  ++ ++l+L  G+G + +a+a++ p+a++  tD+++ +le+  +n+e   + l+++v+  +     +l  +l ++++++li
       EGE26322.1 180 SQLAAPERILDLCTGSGCIAIALAKAFPDANIDATDIDKdALEVAWTNVEH--HELAHQVNLLE----SNLFAKLPAENQYELI 257
                      45567889*****************************987***********..55766665432....2344444555555555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.7e-07   0.00028      47     114 ..     184     252 ..     168     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.7e-07
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--T.TT-TTS- CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqana.eeLpfed 114
                       ++++lD+++G+g +a++l+++     +++  Di+++ L+v+   ++++    ++++l +n   +Lp e+
       EGE26322.1 184 APERILDLCTGSGCIAIALAKAF-PDANIDATDIDKDALEVAWTNVEHHELAhQVNLLESNLfAKLPAEN 252
                      5789***************9976.5679******************9988776*******9625677765 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.8e-07   0.00036      31     128 ..     171     268 ..     160     280 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.8e-07
                    HHHHHHCCC...HCC-EEEETT-TTSHHHHHHHHTT-SEEE..EEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE-- CS
  Cons_hypoth95  31 alFnilaae...iegarvLDlfaGsGalglEAlSRgakkav..lvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDP 121
                    ++F+   +e      +r+LDl+ GsG +++ Al      a   + + dk a+++  +n+e+ +l ++++ l  + + +l+ +    ++++++  +P
     EGE26322.1 171 SFFSHGLEEsqlAAPERILDLCTGSGCIAI-ALAKAFPDANidATDIDKDALEVAWTNVEHHELAHQVNLLESNLFAKLPAE----NQYELIVTNP 261
                    44443323356677899************9.888887655412799*****************9976666666655555555....679******* PP

                    SSSTTCH CS
  Cons_hypoth95 122 Pyakell 128
                    Py + ++
     EGE26322.1 262 PYVDAAV 268
                    **98765 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.3e-07    0.0007      97     194 ..     179     270 ..     174     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.3e-07
                      GSGTTS--EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--TT-SCCHHSSTTSS-EEEEEE-S---SS CS
  Methyltransf_10  97 dsdisaqvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieenerydvtlCnPPfhas 190
                      +s+++a  r+ld+ +G+ Ci   l +     +  ++++d+ +l+ a ++ve   +l+++++l      +++f  l   +++y++ + nPP+ ++
       EGE26322.1 179 ESQLAAPERILDLCTGSGCIAIALAKAFPDANIDATDIDKDALEVAWTNVEHH-ELAHQVNLLE----SNLFAKLPA-ENQYELIVTNPPYVDA 266
                      67888899*******************99**********************99.9999999875....568887765.569**********998 PP

                      ---- CS
  Methyltransf_10 191 laea 194
                      +  a
       EGE26322.1 267 AVMA 270
                      7766 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.6e-06    0.0012       5      64 ..     188     248 ..     185     258 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.6e-06
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTT.SSEEEEES-CCCHH CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealel.kNlrilrgdalkvl 64 
                     +l++++G+G + +alAk++Pd n+ + +i ++ ++ ++ ++e++el + +++l+++ +  l
      EGE26322.1 188 ILDLCTGSGCIAIALAKAFPDANIDATDIDKDALEVAWTNVEHHELaHQVNLLESNLFAKL 248
                     79****************************************9965267888888765555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       4.4   3.3e+03      61      79 ..      62      80 ..      34      87 .. 0.81
   2 !   15.3   0.0   3.1e-05     0.023       1      66 [.     189     258 ..     189     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 4.4
                     -EEEEEEES-CCC-CCHHH CS
  Methyltransf_11 61 sfDlvvssevlhhvedpek 79
                     ++D+vv++ + + +++ ++
       EGE26322.1 62 QYDVVVAQGTTDEFAEAAA 80
                     6899999999888866554 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.1e-05
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECC.CTSS-TT-EEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..kvefvvadae.klpfednsfDlvv 66 
                      Ld+ +G+G +a alak++  a++ ++D++k +l++a ++++  +l  +v+++++++  klp e n++ l+v
       EGE26322.1 189 LDLCTGSGCIAIALAKAFpdANIDATDIDKDALEVAWTNVEHHELahQVNLLESNLFaKLPAE-NQYELIV 258
                      89999**********999***********************9999999999999988346744.4666655 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.3e-05    0.0098      55     131 ..     177     254 ..     168     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
                     HHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HH.HHHHHHHHS.-----TTEEEEES-TTTS-----SEE CS
  Methyltransf_2  55 leafdleglkslvDvGGGtGalakaivsayPtikvivfDlpe.VveaAkehl.sageeervefvgGdffkdslPeaDai 131
                     le+++l   ++++D+  G+G +a a ++a+P  ++   D+ +   e A + + + +++++v+  + ++f  +lP    +
      EGE26322.1 177 LEESQLAAPERILDLCTGSGCIAIALAKAFPDANIDATDIDKdALEVAWTNVeHHELAHQVNLLESNLF-AKLPAENQY 254
                     7788899999***************************999753567777777557899***********.999976665 PP

>> AviRa  RRNA methyltransferase AviRa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.9e-05     0.037      46     100 ..     177     229 ..     170     247 .. 0.84
   2 ?   -1.4   0.0       1.7   1.3e+03     146     178 ..     234     265 ..     228     271 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.9e-05
       AviRa  46 lekkeegapltlyDpCCGgayLltvlgllhgkkikkvlasDvdeevlelakkNLs 100
                 le+++ +ap ++ D C G++ ++   +l ++   +++ a+D+d+++le+a +N++
  EGE26322.1 177 LEESQLAAPERILDLCTGSGCIAI--ALAKAFPDANIDATDIDKDALEVAWTNVE 229
                 5667778999**********9975..5556666689****************985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
       AviRa 146 ekeievfkaditekeeeaekevdivitDlPYGe 178
                 ++++++ + +++  + +ae++ ++++t  PY +
  EGE26322.1 234 AHQVNLLESNLF-AKLPAENQYELIVTNPPYVD 265
                 567777888888.5566666799*****99976 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.4e-05     0.033      48     108 ..     185     244 ..     176     256 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.4e-05
                     --EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H CS
  Methyltransf_3  48 akrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegda 108
                       r+l++ +  G  ++a+a a+P D +i a did++a e+a   +++  +a++++l e++ 
      EGE26322.1 185 PERILDLCTGSGCIAIALAKAFP-DANIDATDIDKDALEVAWTNVEHHELAHQVNLLESNL 244
                     56788888889999999999998.89******************************99875 PP

>> TrmK  tRNA (adenine(22)-N(1))-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.8e-05     0.073      26      71 ..     213     258 ..     189     260 .. 0.88
   2 ?   -3.1   0.0       6.1   4.5e+03      78     112 ..     292     326 ..     286     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.8e-05
        TrmK  26 agevnegplesAkknvkkskleekievrlgdGlavlekedeidviv 71 
                 a ++ + +le A  nv++++l+++++   ++ +a l +e++ + iv
  EGE26322.1 213 ATDIDKDALEVAWTNVEHHELAHQVNLLESNLFAKLPAENQYELIV 258
                 89**************************************998887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.1
        TrmK  78 alIaeILeegkekLkkvkrliLQpnnqeeelRewl 112
                  l+ +IL ++ + L+k   l+    ++e++lR+  
  EGE26322.1 292 DLVHQILYHAPDYLTKDGLLVCEVGDSEWALRQAY 326
                 57889999999999998889988899999999865 PP

>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.7     2e+03     253     284 ..      32      65 ..      19      68 .. 0.73
   2 ?   12.1   0.0   9.1e-05     0.068     204     248 ..     187     233 ..     177     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.7
  tRNA_U5-meth_tr 253 iirlsae..eltealkkkrefrrlkgidlksyaf 284
                      i+ l +e  e  +al   r+f r+   +l++y++
       EGE26322.1  32 IATLYTElgEAEQALVTIRDFIRFVVTKLRQYDV 65 
                      5555554447789999999999999999998875 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.1e-05
  tRNA_U5-meth_tr 204 dllelycGnGnfslalarnf..ekvlateiakssveaaqyniaanki 248
                       +l+l  G G  ++ala+ f   ++ at+i k ++e+a +n+++ ++
       EGE26322.1 187 RILDLCTGSGCIAIALAKAFpdANIDATDIDKDALEVAWTNVEHHEL 233
                      5899****************555899****************98765 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00037      0.28      20      87 ..     182     258 ..     168     360 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00037
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg........kfdlIv 87 
                      l a+ r+Ld+ +G+G  +  l++ +   ++++ D++  a e a  +   +++ +++ +  e++         +++lIv
       EGE26322.1 182 LAAPERILDLCTGSGCIAIALAKAFPdaNIDATDIDKDALEVA-WTNVEHHELAHQVNLLESNLfaklpaenQYELIV 258
                      56899**********77777766665579******98888876.6666666666666555544444444444444444 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.08      48     138 ..     186     266 ..     174     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
    N6_Mtase  48 esvyDpacGsggllvqaekvlkeedgktkelsiyGqeknettyrLakmNlllhgieykkvkirlgdtlekpkfekdkkfdvvvaNppfnqk 138
                 e ++D + Gsg + +  +k +        + +i   ++++ + ++a +N+  h+ + + v+   ++ ++k     +++ + +v+Npp+ ++
  EGE26322.1 186 ERILDLCTGSGCIAIALAKAFP-------DANIDATDIDKDALEVAWTNVEHHELAHQ-VNLLESNLFAK-LPA-ENQYELIVTNPPYVDA 266
                 469************9999884.......55556678999*************99998.66666665554.444.69***********765 PP

>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00027       0.2      14      70 ..      70     127 ..      60     127 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00027
      PrmC_N  14 gieeaeldAelLlahvlglsrsdlllrgerelteeqlerfeelierR.aarePlqyIl 70 
                 g  ++ ++A  ++ h+l+l++s        +lt+++ +++  l+++R  +r+Pl y++
  EGE26322.1  70 GTTDEFAEAAAIVLHSLSLEWSADEQILACKLTPSEKQEVLTLLSERiIQRKPLSYLI 127
                 556667788888888888888844444445567766666666665554********96 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00028      0.21      21      63 ..     181     222 ..     169     257 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00028
      DUF938  21 ylakttervLEiasGtGqHAvffApalpnlkwqpsdqdeelre 63 
                 +la+ + r+L++ +G+G  A+ +A+a+p ++  ++d d+   e
  EGE26322.1 181 QLAAPE-RILDLCTGSGCIAIALAKAFPDANIDATDIDKDALE 222
                 455555.7****************************9987764 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00032      0.24     100     159 ..     184     243 ..     168     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
                 TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES- CS
      Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileD 159
                   e+++d+  G G  ai++ak   +  + a d++ ++ +    n++  ++++ v+ +++ 
  EGE26322.1 184 APERILDLCTGSGCIAIALAKAFPDANIDATDIDKDALEVAWTNVEHHELAHQVNLLESN 243
                 56899****************999****************************99776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2778.32
//
Query:       EGE26323.1  [L=413]
Description: cupin 4 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-79  266.6   0.0    4.1e-79  266.3   0.0    1.1  1  Cupin_4       Cupin superfamily protein
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.019   14.9   0.0    1.4  1  AraC_binding  AraC-like ligand binding domain
      0.019   14.7   0.0        3.1    7.5   0.0    3.0  4  Cupin_8       Cupin-like domain
      0.081   12.6   0.0        1.6    8.5   0.0    2.9  4  Cupin_2       Cupin domain


Domain annotation for each model (and alignments):
>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.3   0.0   9.2e-83   4.1e-79       2     316 ..      48     351 ..      47     354 .. 0.92

  Alignments for each domain:
  == domain 1  score: 266.3 bits;  conditional E-value: 9.2e-83
                 HHHHHHTTTTS-EEE--S-CCCCCCHHHHHHHHCCHHCHHCCC.EEC.TCCEEEEECCCCEEEE-SSB-SCCCHHHHHHCCHCC.CTTEEEEC-HHHC- CS
     Cupin_4   2 eeFlreyWqkkpllirralpafagllspddLaeLaeeeevearlikg.erdkaewkvsrgpleerrlrklpakdwtlLvqgvslwkkavaqLlqpfrfe 99 
                 ++Fl+eyWqkkplli+++lp++ g+++p+d+ +La ee v arli++ ++++++w+ ++ pl e++  ++p+  wt Lvq++++w++++ +L+ +f f+
  EGE26323.1  48 KTFLAEYWQKKPLLIKGGLPDLIGMFEPEDILGLALEEGVSARLISQsDKNINQWSLKSAPLDEDDIYQTPKL-WTILVQNLEQWSPELGELWSHFDFI 145
                 79*****************************************************************999998.************************* PP

                 HHHHHHHHHHHHS-EEEEEEEE-TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-SCCCTTSSSEE--TTCCG--.S-SEEEEE-TT-EEEE-TT-EEEEE CS
     Cupin_4 100 pewrlddvmesfslvgsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvykptvpelelkseeplkildef.epvedfvLepGDlLYlPrgviHqgv 197
                 p+w+ dd+m+s+        a++gg  +vg+HyD+yDVfl Q++G +rW+++k+++ ++++ +++p++ ld++ + ++d+vL++GD+LY+P+++ H+g 
  EGE26323.1 146 PKWQQDDIMVSV--------APKGG--SVGAHYDEYDVFLAQGYGARRWQLGKMCTSDTPFVPNQPIRLLDDMgKIIFDEVLQAGDVLYVPPRLSHHGI 234
                 ************........*****..**********************************************99999********************* PP

                 BBT-CCEEEEEECCEEHCCHHHCHHHHHHHHHHHHHHHCTSCHHCTCGTTTGGGTTS-HHHHHHHHHHHH...HHHHHHHCS-HHHHCCHHHHHHHHS- CS
     Cupin_4 198 aedesltlSvglraptaaellesvldllldklpeiderlrdallravqargeidsdsidalaaqlsellr...dpalleeflgqlltsssrekdiaqsl 293
                 a +++lt+S+g+r+p+  +++++++d++++ +    + l+ ++  +  +  e+++dsi+al+ +l +ll+     all +  g+l+++   +++++  +
  EGE26323.1 235 AMNDCLTFSFGFRRPNLVQIMDELADVATNHANLF-HVLTLPQ-ADQPDAYELSQDSIQALKDKLINLLNskeGDALLTDAIGELVSQR--QYELLAFE 329
                 **************************999999998.7777444.33578899******************4333456666666666666..88888999 PP

                 ---TTCCTCCCCTT-ECEESSTT CS
     Cupin_4 294 ppieedeledllaedgaelsrls 316
                 ++++ d+l+  l edg+ l+ ++
  EGE26323.1 330 DELDADTLKTRL-EDGECLVLNP 351
                 ********9999.9998887665 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   4.1e-06     0.019      45     131 ..     217     314 ..     215     318 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.1e-06
                   E-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEEE................E---TTTHHHHHHHHHHHHHHHT-SSTT CS
  AraC_binding  45 lgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapllpa..............lledeelaqllralfrlleetrsgddll 127
                   l++Gd++ +pp   H + + +  ++ +++++f+   l +i+++  + a +  + +              +l   ++++l ++l+ ll +++ gd ll
    EGE26323.1 217 LQAGDVLYVPPRLSHHGIAMN--DCLTFSFGFRRPNLVQIMDELADVATNHANLFhvltlpqadqpdayELSQDSIQALKDKLINLL-NSKEGDALL 310
                   789******************..**********************999987766699****99999999999999999999999999.888888888 PP

                   HHHH CS
  AraC_binding 128 leal 131
                   ++a 
    EGE26323.1 311 TDAI 314
                   8875 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         2   8.9e+03      11      23 ..      56      68 ..      49      72 .. 0.80
   2 ?    3.3   0.0     0.013        58     104     166 ..     126     186 ..     103     203 .. 0.75
   3 ?    7.5   0.0   0.00068       3.1     215     248 ..     216     246 ..     197     251 .. 0.77
   4 ?   -1.0   0.0      0.26   1.2e+03     202     232 ..     328     358 ..     275     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2
     Cupin_8 11 kskPviikgalkd 23
                ++kP++ikg l d
  EGE26323.1 56 QKKPLLIKGGLPD 68
                789*****99876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.013
     Cupin_8 104 anlasefpelked.sdlpfateafgkkpeavnlWlGnsasvsslHkDhyeNlycvvrGrKkftL 166
                 +nl++  pel e  s+++f ++    +++ + + + +++ + + H+D y+ ++++  G +++ L
  EGE26323.1 126 QNLEQWSPELGELwSHFDFIPKW---QQDDIMVSVAPKGGSVGAHYDEYDVFLAQGYGARRWQL 186
                 55555566666666666665553...3456777778888999*****************99987 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00068
     Cupin_8 215 tlnaGevLylPalWfHeVkslaeeplhlavnywy 248
                  l+aG+vLy+P    H+   +  ++ +l++ + +
  EGE26323.1 216 VLQAGDVLYVPPRLSHHGIAM--ND-CLTFSFGF 246
                 79************9996666..55.66665555 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.26
     Cupin_8 202 fprlkdakkalevtlnaGevLyl.PalWfHeV 232
                 f+   da   l+++l+ Ge+L l Pa  f +V
  EGE26323.1 328 FEDELDA-DTLKTRLEDGECLVLnPACRFVHV 358
                 4444445.889999999999976577666666 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.22   9.8e+02       3      19 ..     155     172 ..     153     183 .. 0.75
   2 ?    8.5   0.0   0.00035       1.6      39      58 ..     215     234 ..     206     239 .. 0.86
   3 ?   -3.2   0.0       1.6   7.3e+03      38      50 ..     338     350 ..     331     353 .. 0.75
   4 ?   -2.4   0.0       0.9     4e+03      32      45 ..     361     375 ..     360     379 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.22
                 EEEETTE.EEEEECSSSE CS
     Cupin_2   3 velppGe.sapshrHpge 19 
                 v+++p + s ++h+ ++ 
  EGE26323.1 155 VSVAPKGgSVGAHYDEYD 172
                 67788887******9987 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00035
                 EEEETTEEEEE-TT-EEEEE CS
     Cupin_2  39 veleaGdsvyfpagtpHrfr 58 
                  +l+aGd++y+p+   H+ +
  EGE26323.1 215 EVLQAGDVLYVPPRLSHHGI 234
                 589***********999865 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.6
                 EEEEETTEEEEE- CS
     Cupin_2  38 eveleaGdsvyfp 50 
                 +++le+G++++ +
  EGE26323.1 338 KTRLEDGECLVLN 350
                 7899999998765 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.9
                 EE.ECTEEEEEETTE CS
     Cupin_2  32 lt.vdgeeveleaGd 45 
                 ++ ++ge+v+l++++
  EGE26323.1 361 VWyINGEKVDLSDDE 375
                 45599****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 3414.88
//
Query:       EGE26324.1  [L=51]
Description: hypothetical protein EA1_05647 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0039   16.2   0.3     0.0044   16.0   0.3    1.0  1  LMBR1     LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   2.5e-07    0.0044       2      42 ..       3      45 ..       2      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.5e-07
       LMBR1  2 sliillllflllfllallllrrykrkkdqea..vvkllvllal 42
                s+i +l+lf++l+l+ +++  ++++ + ++   +++++++l++
  EGE26324.1  3 SVIRMLMLFMILLLIGAYVFGQFQNHHSDNVnpIPVVFCVLGT 45
                6799*********************99988899*******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 450.00
//
Query:       EGE26325.1  [L=1240]
Description: DNA polymerase III, alpha subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-96  322.3   0.0    7.3e-96  320.7   0.0    1.8  2  DNA_pol3_alpha   Bacterial DNA polymerase III alpha NTPase do
      2e-61  206.1   0.2    3.5e-61  205.4   0.2    1.4  1  DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit f
    1.3e-27   97.1   0.0    7.4e-27   94.7   0.0    2.2  2  PHP              PHP domain
      6e-27   93.7   0.4    4.1e-26   91.1   0.0    2.6  3  HHH_6            Helix-hairpin-helix motif
  ------ inclusion threshold ------
       0.12   12.4   0.1       0.28   11.2   0.1    1.7  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
       0.17   12.4   0.1       0.55   10.7   0.1    1.8  1  Imm42            Immunity protein 42


Domain annotation for each model (and alignments):
>> DNA_pol3_alpha  Bacterial DNA polymerase III alpha NTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.1   3.4e+03     219     247 ..     202     232 ..     198     234 .. 0.78
   2 !  320.7   0.0   2.4e-99   7.3e-96       9     260 .]     317     584 ..     309     584 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.1
                     E-SS..-GGGTS-EEE-TTT--EEESS-HHH CS
  DNA_pol3_alpha 219 ispk..eltdlvPlqkaekeeevvtqfdmed 247
                     i+++  + ++  P ++++k+++v t+fd ++
      EGE26325.1 202 IAHNdvRFIHASPTETNDKNNTVSTDFDAHE 232
                     4444356788999999999999******986 PP

  == domain 2  score: 320.7 bits;  conditional E-value: 2.4e-99
                     HHHHHHS............TT---TTHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTT--B-S--GGGGG-HHHHHTTS----HHHHT--HH CS
  DNA_pol3_alpha   9 eglkerl............keelpeevkerlekElevIekmgfadyflivadlvkaakkkgilvGpgRGSaagslvayllgiTeidPlkydllFe 91 
                     +gl++rl             +++++ + erl++El++I kmgf++yfliv d++++ak +g++vGpgRGS+agslvay l+iT++dPl+ydllFe
      EGE26325.1 317 DGLNRRLeklypvdqrdddWDKVRKPYDERLDYELDIILKMGFPGYFLIVTDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDLLFE 411
                     5555555555577777665677899********************************************************************** PP

                     HHS-TTS-------EEEEGGGHHHHHHHHHHHH-TTTEEEEEEEEE--HHHHHHHHHHHH-GGHHHHHHHHHTS---SS--GGGG-----SHHHH CS
  DNA_pol3_alpha  92 rFlnpervsmPDiDidfekerreevidyvkekyGkenvaqiitfgtlaakaairdvgralglplkevdklaklipkelgitlekaleeekelkel 186
                     rFlnpervsmPD+Didf+ e r++vidyv+++yG++ v+qiitfgt+aa+a++rdv r+ g p+   d+++k+ipk++gi+le+a+++e++lkel
      EGE26325.1 412 RFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVTRVQGKPFGLGDRISKMIPKTPGIKLEDAFDQEPQLKEL 506
                     *********************************************************************************************** PP

                     HH.....H-HHHHHHHHHHHTTTT-EEEEEEEEEEEEE-SS-GGGTS-EEE-TTT--EEESS-HHHHHTTT-EEEEEEE CS
  DNA_pol3_alpha 187 ie.....edeevkrlvelakkleglkrntgqHaaGvvispkeltdlvPlqkaekeeevvtqfdmedledlgllKlDfLG 260
                      +     ++e + +++e+akklegl+rn+g Ha+Gv+i+p++++d+ ++++ + e+++v+q+d++d+e++gl+K+DfLG
      EGE26325.1 507 LTnpdapDHELALEIWEMAKKLEGLTRNVGKHAGGVLIAPNRISDFSAIYC-DGEGHPVSQYDKDDVEAVGLVKFDFLG 584
                     98676666666777*************************************.9*************************9 PP

>> DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.4   0.2   1.2e-64   3.5e-61       1     166 []     587     762 ..     587     762 .. 0.95

  Alignments for each domain:
  == domain 1  score: 205.4 bits;  conditional E-value: 1.2e-64
                      HHHHHHHHHHHHHHHH--....---GGG--S--HHHHH.HHHHT--TTSTT--SHHHHHHHHHH---SHHHHHHHHHHSSHHHHHTTHHHHHHH CS
  DNA_pol3_finger   1 tltiirralklikekkgk....eidleeipleDkkvyk.llskgdtlGvfqlesrgmrqllkrlkPktfeDlvalvaLyRpgpvqggnvddyik 89 
                      +lt+++ a+++i+++++     +idle++pl+D++vy  +l++++t +vfqles+gm+++l +lkP+++eD++a+ aLyRpgp+++g+v d+i+
       EGE26325.1 587 NLTVLQAAVDNINQTRQAqgqsSIDLETLPLDDADVYTsVLQEAKTSAVFQLESSGMKKYLAQLKPSNIEDVIAMCALYRPGPLESGMVSDFID 680
                      79**********88885533335*************9769****************************************************** PP

                      HHTTSS----SSH.....HHTTTTTTTTT---BHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT CS
  DNA_pol3_finger  90 rkngeekveyihp.....eleeiLketygvivyQEqvmqiaqvlagfslgeAdllrramgkkkeeeleklkekfiegakeng 166
                      rk+g ++v+y+hp      l++ L++tygvivyQEqvmqiaqvlag++lg Ad+lrramgkkk+ee++k++  f+ega+e++
       EGE26325.1 681 RKHGIQEVAYPHPqfqheLLQPPLESTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQN 762
                      *************9999999**********************************************************9875 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   2.5e-30   7.4e-27       1     164 [.       5     176 ..       5     178 .. 0.92
   2 ?   -1.6   0.0         1     3e+03      34      61 ..     927     960 ..     918    1033 .. 0.85

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 2.5e-30
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE.....................E....EHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayvaddse...kerpshltllaknqeGyknllkl 96 
                 +l +++ey   d++++i++lvk+a ++g++++a+ D +n+f++v+fyka+     agikpiiG+e+ v ++s+    +  + ++l+a+++ Gy+nl++l
  EGE26325.1   5 HLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKAC---IGAGIKPIIGAEVVVGEHSDkdaADARHSVILYAMSHHGYQNLMRL 100
                 67789*********************************************...999*********88887777776788999***************** PP

                 HHHHHH..................HHHHHHS..................TTGGHHHHHHHHHHHHHHHC...T-EEEE CS
                 xxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx RF
         PHP  97 lskaylegf........yrkpridkellekhsegLivlsgclkGevfealdlieveekaeealeelakif..gdyiEi 164
                 +s+ay++           ++p i+k+ l+++s++Li++    ++e+++ l+  + ++ a  +l+++++if  + yi i
  EGE26325.1 101 ISDAYTNRPmnnhgsveFETPVITKAALAEYSDELIAILTH-RSEIAQPLLSHNPDN-ALPILQTWQDIFgdRLYIGI 176
                 ******76699999999999****************99985.59****887889999.************88888876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
                 EEEEEBTT.........HHHHHHHHHHHHTTTTSEEE CS
                 xxxxxxxx.........xxxxxxxxxxxxxxxxxxxx RF
         PHP  34 iTDhgnlf.........gyvefykaakkkykagikpi 61 
                 iTDh+++          + +e++ aa ++++   + +
  EGE26325.1 927 ITDHSDCSyqirrglwrQLPEAMAAADQNRQ---NQL 960
                 99***99999999999999999999966553...333 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         2   5.9e+03      29      52 ..     585     607 ..     582     611 .. 0.72
   2 !   91.1   0.0   1.4e-29   4.1e-26       1      84 [.     836     919 ..     836     923 .. 0.95
   3 ?   -2.0   0.1       1.5   4.4e+03      19      44 ..    1116    1141 ..    1102    1144 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
       HHH_6  29 LaaikglgeaaaerivaeRekegp 52 
                 L+ +  + +aa+++i ++R+++g+
  EGE26325.1 585 LRNLT-VLQAAVDNINQTRQAQGQ 607
                 55554.44788999***9998775 PP

  == domain 2  score: 91.1 bits;  conditional E-value: 1.4e-29
       HHH_6   1 gvevlppdvnrSeadftveeedgairlGLaaikglgeaaaerivaeRekegpfksledlarrvds..lnkrqleaLakaGaldslg 84 
                 g+++ pp+vn+S+++f v  + ++i++GL+a+kg+ge+a+++iva+R+ +g+fk+l d+++rvd   + kr leaL+kaG++d l 
  EGE26325.1 836 GLTIIPPSVNHSQWKFVVR-DAKTIVYGLGAVKGVGEEAVNSIVAARK-DGAFKDLYDFCNRVDIkkVGKRSLEALIKAGCFDILA 919
                 789***************7.6677***********************9.9**************999****************886 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.5
       HHH_6   19 eeedgairlGLaaikglgeaaaeriv 44  
                  e++dg+i   L++i+ +++a ++r+ 
  EGE26325.1 1116 ENDDGRIFTRLHHIESIENARIRRLK 1141
                  3456669999********99999975 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   9.5e-05      0.28       2      52 ..    1035    1083 ..    1034    1084 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.5e-05
                       EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEE CS
  tRNA_anti-codon    2 tvaGrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvv 52  
                       ++aG + ++     g  i ++l+Dg gri+ ++  e + +++e l+ G+ v
       EGE26325.1 1035 WIAGLIYDV--AFFGERIVVKLDDGKGRIEMSCYGETFNQFKEVLTAGKRV 1083
                       678888888..77888999**************************999887 PP

>> Imm42  Immunity protein 42
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00018      0.55      45     116 ..     589     657 ..     585     661 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
       Imm42  45 ttLrsevnslkdnksalinkkidkelfnldakeafkllvdaegaekgddeddleedeeesyrydlspeeifD 116
                 t L+++v +++++++a+ + +id e ++ld++++++ ++++    k+++  +le+  ++ y  +l+p +i+D
  EGE26325.1 589 TVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQE---AKTSAVFQLESSGMKKYLAQLKPSNIED 657
                 7899*************************************...8888888999999*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.48
# Mc/sec: 7828.48
//
Query:       EGE26326.1  [L=294]
Description: tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-25   90.1   0.1    2.2e-24   86.3   0.1    2.2  1  SpoU_methylase   SpoU rRNA Methylase family
  ------ inclusion threshold ------
      0.017   14.8   0.4      0.032   13.9   0.5    1.5  1  Miff             Mitochondrial and peroxisomal fission factor
      0.028   13.8   0.0      0.042   13.2   0.0    1.2  1  Methyltrans_RNA  RNA methyltransferase
      0.094   12.9   0.0       0.24   11.6   0.0    1.7  2  DUF2590          Protein of unknown function (DUF2590)


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.1   4.9e-28   2.2e-24       2     140 ..      13     185 ..      12     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 4.9e-28
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHH.EEEESSHHHHHHHHCCCTEEEEEEST.T-SEGCCS... CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevle.lkvvdsleealkelkeegfalvatsl.kgkslsei... 91 
                     +++v+v+++ p N+G++aR+  ++g+++lv+v+pr    +++  ++ aaga  +l+ +++ +++++a+ +++   fa  a+s+   +++ +    
      EGE26326.1  13 IRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPRLP--IDDSSYANAAGAGILLDkACITKDIKHAIGDCTLI-FAASARSRqMPRPVLTPsma 104
                     79*******************************9995..888889999999999999***************99.66666666433333322334 PP

                     ....HHH.............................TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHH CS
  SpoU_methylase  92 ....dlk.............................ekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvail 140
                           k                              k+a++fG+Ed+Gl+ne+l+lad++++Ip + +++ LNva A +++
      EGE26326.1 105 aqvaL-KqlsqtvskntlatsldhmnqsaddsvnalPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQVI 185
                     44440.144555566667777778888899999999*******************************************998 PP

>> Miff  Mitochondrial and peroxisomal fission factor Mff
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.5     7e-06     0.032     175     260 ..     173     274 ..      86     280 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7e-06
        Miff 175 ysargilsliqsttrrayqqvlevldenrlrggsaskssslskhd....................slreelstldssleltpddvtvvdaasLrrqiik 253
                 y + +++s iq+ t   + q   +l ++ l++ ++ +    ++++                    +l +++ tl + l+l+ dd    d+ +L   + +
  EGE26326.1 173 YPVLNVASAIQVITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSlpihirsdwdepaitqaqsaNLESAIITLMQRLNLAHDD----DLKHLPNRLSR 267
                 456688899999999999999999999885444444444444444666668888888888888888888999999*********....*********** PP

        Miff 254 lnrRLql 260
                 lnrRLql
  EGE26326.1 268 LNRRLQL 274
                 *****97 PP

>> Methyltrans_RNA  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.3e-06     0.042     119     222 ..      85     187 ..      81     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.3e-06
                      HHHHHHHT-SS--EEEEEEEHHHHHHHCSCCEEEEEEETTSSEBGGGSSHCCHTHHCS..EEEEEE--T.T---HHHHHHHHHTTCEEEB-SSS CS
  Methyltrans_RNA 119 ieAaeQsgrtrlpevkepislkelleelkeadlklildeeekksleelsekkkelkev..kvlliiGPE.GGfsekEiellkeagfkpvsLgpr 209
                       +A   s++   p +++ +  + +l++l++   k  l  +    l+ +++++ +  ++  k+++++G E +G++++E++l+  +  +p +L+  
       EGE26326.1  85 FAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS----LDHMNQSADDSVNAlpKIAILFGREdRGLTNEELSLADYHIQIPANLNYP 174
                      5777888888888888888888888888886443333333....33333333333333569********99*********************** PP

                      ---HHHHHHHHHH CS
  Methyltrans_RNA 210 iLRteTAalaals 222
                      +L + +A  ++++
       EGE26326.1 175 VLNVASAIQVITA 187
                      *******988876 PP

>> DUF2590  Protein of unknown function (DUF2590)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.3e-05      0.24      20      44 ..      63      87 ..      40     107 .. 0.77
   2 ?   -3.2   0.0       2.2   9.8e+03      56      72 ..     246     262 ..     240     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
     DUF2590 20 lvedrasiaqDikHailesgllvel 44
                ++ d+a+i++DikHai +  l+++ 
  EGE26326.1 63 ILLDKACITKDIKHAIGDCTLIFAA 87
                45689*************9998865 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.2
     DUF2590  56 iltqlellvedDeRlvP 72 
                  +++l+l+ +dD +  P
  EGE26326.1 246 LMQRLNLAHDDDLKHLP 262
                 67888888888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2228.59
//
Query:       EGE26327.1  [L=268]
Description: serine O-acetyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-14   50.8   8.6    6.8e-08   31.9   2.5    2.4  2  Hexapep    Bacterial transferase hexapeptide (six repeats)
    3.4e-05   24.2   0.1    0.00016   22.0   0.0    2.0  2  SATase_N   Serine acetyltransferase, N-terminal
     0.0001   22.0  11.3     0.0011   18.7   3.3    3.0  3  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.4   1.2e-08   7.1e-05       2      36 .]      79     115 ..      73     115 .. 0.92
   2 !   31.9   2.5   1.1e-11   6.8e-08       1      34 [.     125     158 ..     125     160 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.2e-08
                 EEEETTEEE-T..TEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgp..faviggnVkIGdnvkIgagvvigg 36 
                 ++IG+  +I++  ++vig+ ++IGd+v++ +gv++gg
  EGE26327.1  79 AKIGKRFFIDHgmGVVIGETAEIGDDVTLYHGVTLGG 115
                 67899999999***********************997 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 1.1e-11
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 ++++G+nv++g++a+i+g+  +Gd++kIg+++v+
  EGE26327.1 125 HPTLGNNVVVGAGAKILGGFRVGDDAKIGSNAVV 158
                 5789*****************************9 PP

>> SATase_N  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.6e-08   0.00016      68     102 ..       7      41 ..       1      42 [. 0.91
   2 ?   -0.6   0.1      0.28   1.7e+03      69      85 ..     209     225 ..     171     254 .. 0.57

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.6e-08
                 HHHHHHHHHHHHHHHH-TT---THHHHHH-HHHHH CS
    SATase_N  68 eiveaaraDlkAvlerDpAcksylepllyfKGFhA 102
                 ++ +++  D+kAvl+rDpA++s +e+ll + G hA
  EGE26327.1   7 KLKNTITDDVKAVLARDPAARSQMEVLLTYPGIHA 41 
                 5778999*************************998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHH-T CS
    SATase_N  69 iveaaraDlkAvlerDp 85 
                 ++++++a l+ ++erD 
  EGE26327.1 209 VASSIAALLAHIQERDK 225
                 22223333333333333 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.57   3.4e+03      12      20 ..      67      75 ..      67      76 .. 0.85
   2 !    7.4   0.5   0.00059       3.6       4      32 ..      81     113 ..      78     114 .. 0.76
   3 !   18.7   3.3   1.8e-07    0.0011       5      32 ..     129     158 ..     127     160 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.57
                TT-EESEEE CS
   Hexapep_2 12 anagiGvsl 20
                +++++G+++
  EGE26327.1 67 SRCTTGIEI 75
                58999*998 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00059
                 E-TT-EE..-TT-EES..EEE-TT-EE-TT-EE CS
   Hexapep_2   4 IGdnCli..GanagiG..vslGdncvvgaGvvi 32 
                 IG++ +i  G   +iG   ++Gd+++++ Gv++
  EGE26327.1  81 IGKRFFIdhGMGVVIGetAEIGDDVTLYHGVTL 113
                 66666665566677888899**********987 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1.8e-07
                 -TT-EE-TT-EE..SEEE-TT-EE-TT-EE CS
   Hexapep_2   5 GdnCliGanagi..GvslGdncvvgaGvvi 32 
                 G+n+++Ga a i  G  +Gd++++g++ v+
  EGE26327.1 129 GNNVVVGAGAKIlgGFRVGDDAKIGSNAVV 158
                 9************99************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2134.76
//
Query:       EGE26328.1  [L=204]
Description: DNA-3-methyladenine glycosylase 1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-74  248.7   0.1    3.3e-74  248.5   0.1    1.0  1  Adenine_glyco  Methyladenine glycosylase


Domain annotation for each model (and alignments):
>> Adenine_glyco  Methyladenine glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.5   0.1   1.8e-78   3.3e-74       1     176 [.      20     197 ..      20     198 .. 0.98

  Alignments for each domain:
  == domain 1  score: 248.5 bits;  conditional E-value: 1.8e-78
  Adenine_glyco   1 wankdplyvaYhDeeWGvpvtddkklFelLvLegfqaglswetilkkreafreafdgFdlekvakydeekveelladegiirnrlKieavisnAra 96 
                    w+ +dply++YhD+eWG+p +dd++lF+ L+Le++q+glsw+tilkkr+++ ++fd+Fd+ k+++yd++k+e+l++++giir+  Ki+a+i+nA+a
     EGE26328.1  20 WCLSDPLYIHYHDHEWGKPIYDDQRLFAQLCLESMQSGLSWITILKKRDNYYHVFDEFDAIKITQYDQAKIEALMQNTGIIRHLGKINAIINNAKA 115
                    9*********************************************************************************************** PP

  Adenine_glyco  97 vlalqeefgsfseylwsfv..dgkpiveelksaeevpattelsealskdLkkrGfkfvGptivysflqavGlvndhleeC.fr 176
                    +la++e+ +sfs+ylw ++  dgkp+++  k+ +++p+++e s++l+k+Lk++Gfkf+G+t++y+f+qavG+vndhl +C fr
     EGE26328.1 116 YLAITEH-QSFSDYLWGIAtpDGKPVINYPKTLADIPTQNEVSARLAKALKQQGFKFIGSTTCYAFMQAVGMVNDHLIDCdFR 197
                    ***9666.**********98899*********************************************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1696.40
//
Query:       EGE26329.1  [L=344]
Description: MscS mechanosensitive ion channel [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-52  176.6   0.8    7.4e-52  175.9   0.8    1.3  1  MS_channel  Mechanosensitive ion channel
    7.7e-07   29.0   0.8    7.7e-07   29.0   0.8    2.2  2  TM_helix    Conserved TM helix
  ------ inclusion threshold ------
      0.082   12.4   0.9       0.42   10.0   0.0    2.4  4  DUF1116     Protein of unknown function (DUF1116)


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.8   1.2e-55   7.4e-52       3     206 .]     113     309 ..     111     309 .. 0.97

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 1.2e-55
                 HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHHH CS
  MS_channel   3 ilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnssl 101
                 +l+ l++v++il+ l  lgvn+++++avlGa+g+a+g  lkd +snl+aG+++++ +pf  GDlveig+  GtV di+l  t+irt  + +++iPn  +
  EGE26329.1 113 LLYGLMLVTVILASLNKLGVNTNSFVAVLGAAGVAIGVSLKDQLSNLAAGVLIVIFRPFGRGDLVEIGGKLGTVLDISLVNTRIRTAHNHEIIIPNGDI 211
                 55667788899999************************************************************************************* PP

                 HTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHHH CS
  MS_channel 102 vtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkile 200
                 +ts+ +N+s   ++rr++v++g+ y++d   ++++++++   ++ +p+vl+d++++v++++++dss+++ +rv++++   ++++ +q+++ +++k++++
  EGE26329.1 212 MTSASINYSS-LPNRRVDVEVGIGYNAD---IREARKVMIGLAEAHPNVLDDPKPTVIVTALADSSVDLVLRVWTNN---DDWFMTQADLLEQVKYAFD 303
                 **********.*****************...99999999999999********************************...******************* PP

                 HHT--- CS
  MS_channel 201 eegiei 206
                 e+gi+i
  EGE26329.1 304 EAGIDI 309
                 ****86 PP

>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.8   1.3e-10   7.7e-07       4      50 .]      59     105 ..      58     105 .. 0.96
   2 ?   -2.0   0.2      0.61   3.6e+03      12      21 ..     108     117 ..     106     125 .. 0.63

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.3e-10
                 XSXXHHHHTTHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH CS
    TM_helix   4 nnllnellsflPnLvgAilILlvGwiiAkfvsrlvtkllaktgiddt 50 
                 n+l +  + f ++Lv+A+lI++vG +i+k +  + + ++ k+++d+t
  EGE26329.1  59 NTLTQLAIDFSGRLVLALLIFFVGQWIGKRIVGVAKHIMVKSRLDRT 105
                 8999999**************************************97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.61
                 TTHSHHHHHH CS
    TM_helix  12 sflPnLvgAi 21 
                 +fl+nL+  +
  EGE26329.1 108 NFLGNLLYGL 117
                 5666666544 PP

>> DUF1116  Protein of unknown function (DUF1116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.66     4e+03     125     157 ..       9      41 ..       4      49 .. 0.68
   2 ?   -3.2   0.1      0.81   4.8e+03     159     179 ..     131     151 ..     116     155 .. 0.77
   3 ?   -0.8   0.0      0.15     9e+02       2      21 ..     195     214 ..     194     226 .. 0.84
   4 ?   10.0   0.0     7e-05      0.42     152     195 ..     252     295 ..     240     306 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.66
                 HHHHHHHHHHHTS-TTTTHHHHHHHHHHHHHHT CS
     DUF1116 125 kkelaevlkflaendqfflnlamaaakavldaa 157
                 ++e + v++++a++ +   +++  aa+++ d+ 
  EGE26329.1   9 NSESNTVVRTVADTAETAKEVVTDAARLTKDTL 41 
                 456677777777777777777777777766655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.81
                 S-TT--BEEEEEEESSEEEEE CS
     DUF1116 159 giegstlvtamarNGtefGir 179
                 g++  + v +++  G+ +G+ 
  EGE26329.1 131 GVNTNSFVAVLGAAGVAIGVS 151
                 677888999999999999986 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.15
                 EEEEGGGGTB--STT--B-T CS
     DUF1116   2 elepchdhsavgpmagvvsp 21 
                 +++ +h+h+ + p + +++ 
  EGE26329.1 195 RIRTAHNHEIIIPNGDIMTS 214
                 57899***********9875 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 7e-05
                 HHHHHTSS-TT--BEEEEEEESSEEEEEETTT-T--EEEE---- CS
     DUF1116 152 avldaaegiegstlvtamarNGtefGirvsglgdeWftapanap 195
                 a  +  ++ +   +vta+a   +++ +rv   +d Wf+++a   
  EGE26329.1 252 AHPNVLDDPKPTVIVTALADSSVDLVLRVWTNNDDWFMTQADLL 295
                 55555566677789*************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2607.62
//
Query:       EGE26330.1  [L=300]
Description: short chain dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-39  135.8   0.4    1.7e-39  135.3   0.4    1.2  1  adh_short        short chain dehydrogenase
    1.3e-23   83.8   0.5    1.8e-23   83.3   0.5    1.2  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    6.7e-13   48.9   0.3    1.1e-12   48.3   0.3    1.3  1  KR               KR domain
     0.0017   17.9   0.2      0.003   17.1   0.2    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.24   11.2   0.0    1.4  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
       0.17   12.2   0.8        5.6    7.3   0.0    3.0  3  HHH_3            Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   0.4   5.6e-43   1.7e-39       1     187 [.      54     244 ..      54     249 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 5.6e-43
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 k+vl+tGassG+G  +a+++a  G+++++++r+ e+le++++el+ + g ++++ ++Dvtd+e++ +++ +  k++g++d ++ NAG+  s+ + +   
  EGE26330.1  54 KTVLITGASSGLGAMMARKFAFLGYDLAICARRLERLEAIKAELEGDyGITVHIKRLDVTDYEQIFEVFGEFTKQIGQIDKIIVNAGVGDSRVIGHGRF 152
                 79**************************************************************************************99999999999 PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-T.TBHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBSSHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpva.gvaaYsAsKaavagltrslakelaptg..irvnavaPGlvdTdma 187
                 +  +++ e+N+ +++  ++a+++ + +q+sG+ v +sS+ +  +++ +++ Y+A+Ka++a l++ ++ ++ +++  i+v++++PG+v+Td++
  EGE26330.1 153 NINRATAEINFIAAIAQCEAAMQIFRRQNSGQLVVISSMSAVRGLPrHLTTYAAAKAGLARLAEGIRADMIKEKlpITVSTIYPGYVRTDLN 244
                 99***************************************999984689****************************************97 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.5     6e-27   1.8e-23       1     183 [.      60     248 ..      60     273 .. 0.88

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 6e-27
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   Ga sg+G+ +A+++a  G++++++ ++ e+ ++  +el+ ++g +v   ++DVtd eq+ +++ e ++++g++D ++ nag+ ++    + +   + 
    EGE26330.1  60 GASSGLGAMMARKFAFLGYDLAICARRLERlEAIKAELEGDYGITVhiKRLDVTDYEQIFEVFGEFTKQIGQIDKIIVNAGVGDS--RVIGHGRFNI 154
                   899**********************999995666667777777554559***********************************9..4444445555 PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEE--BHCTGGGGST CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgpkg..iRvNavspgpikTlaasgik 183
                    + + ++n+ ++++ ++aa+++++++  g++v +ss++a r++p +   y+aaKa+l  l+  + +++ +++  i+v ++ pg+++T+++ g+k
    EGE26330.1 155 NRATAEINFIAAIAQCEAAMQIFRRQnsGQLVVISSMSAVRGLPRHLtTYAAAKAGLARLAEGIRADMIKEKlpITVSTIYPGYVRTDLNIGAK 248
                   566789***************9988889****************9988********************9976569************9976665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.3   3.6e-16   1.1e-12       2     164 ..      55     219 ..      54     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 3.6e-16
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT. CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle. 98 
                 t+litG+  gLG  +ar  a  g   l++++R+ +   + +a  aele   g++v++ ++Dv+d +++ +++ e++++ ++i  +i  Agv + + +  
  EGE26330.1  55 TVLITGASSGLGAMMARKFAFLGY-DLAICARRLE---RLEAIKAELEGDyGITVHIKRLDVTDYEQIFEVFGEFTKQIGQIDKIIVNAGVGDSRVIGh 149
                 78*******************996.6999****44...4444557787655********************************************9972 PP

                 ...T--HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-.HHHHHHHHHHHHHHHHHH CS
          KR  99 ...emtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagq.anYaaaNaflDalaeyrr 164
                    + + ++ e  + + ++ ++   +++++++   +v++SS++++ g + + ++Yaaa a l  lae  r
  EGE26330.1 150 grfNINRATAEINFIAAIAQCEAAMQIFRRQNSGQLVVISSMSAVRGLPRHlTTYAAAKAGLARLAEGIR 219
                 222466777777888999999999***********************9876378****999999988655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2     1e-06     0.003       1     117 [.      56     193 ..      56     223 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC............EEEE--TT-HHHHHHHH....HHH.T-SEEEE--S---HHH... CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl............elveldltdrsalerlf....kee.qpdavihlAavggvaa... 79 
                 +l+tGa+  +G+ ++++++  gy++   +r+      +rle +            ++ +ld+td +++ ++f    k+  q+d +i  A+vg+ ++   
  EGE26330.1  56 VLITGASSGLGAMMARKFAFLGYDLAICARRL-----ERLEAIkaelegdygitvHIKRLDVTDYEQIFEVFgeftKQIgQIDKIIVNAGVGDSRVigh 149
                 79**********************66666662.....22222223347799***************777766222245578999999999887654222 PP

                 .HHHSHHHHHHHHTHHHHHHHHHHH....HHTCTEEEEEEE.GG CS
   Epimerase  80 .ssedpadfieknlqgtlnlleaar....kagvkrllflsS.se 117
                  +++ + +++e+n++ +   +eaa     +++  +l+ +sS s+
  EGE26330.1 150 gRFNINRATAEINFIAAIAQCEAAMqifrRQNSGQLVVISSmSA 193
                 35666677777787777777777655555667778888888444 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     8e-05      0.24      23      53 ..      34      66 ..      26      81 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8e-05
                     HHHHHHHHHHS-----...-SEEEEESTSSHHH CS
  Eno-Rase_NADH_b 23 veeqieyvksqkkiek..gpkkvLviGaStGYG 53
                     v +  +++k+ ++i++  + k+vL+ GaS+G G
       EGE26330.1 34 VANRFNKIKDLNDIRGigAGKTVLITGASSGLG 66
                     67778888888888875458***********98 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0019       5.6      29      54 ..      32      52 ..      29      60 .. 0.89
   2 ?   -3.2   0.0       3.4     1e+04      20      29 ..      63      72 ..      62      73 .. 0.87
   3 ?    2.0   0.1     0.083   2.5e+02       5      14 ..     151     160 ..     148     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
       HHH_3 29 nIvayReknGpfksreeLlkvkglgp 54
                +Iva R     f+++++L +++g+g+
  EGE26330.1 32 RIVANR-----FNKIKDLNDIRGIGA 52
                788888.....*************97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.4
       HHH_3 20 pGlgpklAkn 29
                +Glg+++A++
  EGE26330.1 63 SGLGAMMARK 72
                79*****986 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.083
       HHH_3   5 gvdiNtAsae 14 
                 +++iN A+ae
  EGE26330.1 151 RFNINRATAE 160
                 799****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2278.26
//
Query:       EGE26331.1  [L=325]
Description: putative periplasmic protease [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-42  145.1   0.0      3e-42  144.2   0.0    1.5  1  Peptidase_S49    Peptidase family S49
      1e-33  116.6   1.3    1.7e-33  115.9   1.3    1.3  1  Peptidase_S49_N  Peptidase family S49 N-terminal
    0.00022   20.3   0.1    0.00035   19.7   0.1    1.3  1  SDH_sah          Serine dehydrogenase proteinase
  ------ inclusion threshold ------
      0.021   14.9   0.3      0.053   13.5   0.3    1.6  1  FokI_C           Restriction endonuclease FokI, catalytic dom
      0.053   12.8   0.6        4.3    6.6   0.4    2.4  2  ECH_1            Enoyl-CoA hydratase/isomerase
       0.11   13.0   4.5       0.36   11.4   0.2    3.3  4  ING              Inhibitor of growth proteins N-terminal hist
       0.25   10.4   2.8       0.36    9.9   0.7    1.9  2  APG17            Autophagy protein Apg17


Domain annotation for each model (and alignments):
>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.0   1.2e-45     3e-42       3     143 ..     131     269 ..     129     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 1.2e-45
                    HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHHHHHHHHHHHHHHH CS
  Peptidase_S49   3 kkakkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksavslrrelteeereilqrlldetyqq 98 
                    k+a+ ++++ ++++aaSggY++a++adki+a+ ++++gsiGv+ ql+n++++l+k++v+++ ++aGeyk++v+++ e+ +e r++ q+ ++ +++ 
     EGE26331.1 131 KEAGLKLTICVDKIAASGGYMMACTADKIIASDFAVIGSIGVVSQLPNFHEFLKKHDVQFEQFTAGEYKRTVTIFGENDDEDRAKHQADIERIHEL 226
                    78999******************************************************************************************* PP

                    HHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHH CS
  Peptidase_S49  99 FvqtVaknRnlsveqvdkiAegrvltgqqAlklgLvdelgtvdda 143
                    F+ ++ k+R  +  +++ +A+g+v++g++Al+lgL+de+gt+d  
     EGE26331.1 227 FKGFIHKYR--PQLDLERVATGEVWFGEDALELGLIDEIGTSDAY 269
                    *********..9*****************************9975 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   1.3   6.5e-37   1.7e-33      36     153 .]       6     127 ..       2     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 6.5e-37
  Peptidase_S49_N  36 kekgelevtkLneeykelkeeleealldeeelkaaekk....ekkeekeekkaekkkakeeeekkrvfvldFkGdikAsevesLreeitavLsv 125
                      k+  el++t+Ln+  k++k+++++   +++ + ++ k+      k+ k+ +k+ +++++++++k+ ++vldF+GdikAs+v++Lreei+a++sv
       EGE26331.1   6 KKPIELHITHLNNAQKDTKNKIKTIQSEHHGASHKFKDklcqLFKDIKTLDKKCQQSTDDHTQKAAIYVLDFDGDIKASAVAHLREEISAIISV 99 
                      55669*****************9888776655555554111134444555555555555599******************************** PP

  Peptidase_S49_N 126 akpeDevllrLesgGGvVhgYGlaasqL 153
                      a+++Dev+lrLesgGG Vh+YGlaa+qL
       EGE26331.1 100 ANRGDEVVLRLESGGGQVHAYGLAAAQL 127
                      ***************************8 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.4e-07   0.00035      96     156 ..     108     171 ..      87     186 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.4e-07
     SDH_sah  96 liihtpGGlv....laatqiakalkehkaktrvivphyamsGGtlialaadeiildenavlGpvd 156
                 l + + GG v    laa q+ + +ke   k ++ v + a sGG ++a +ad+ii  + av+G + 
  EGE26331.1 108 LRLESGGGQVhaygLAAAQLVR-IKEAGLKLTICVDKIAASGGYMMACTADKIIASDFAVIGSIG 171
                 5555666655222266777665.6778889********************************864 PP

>> FokI_C  Restriction endonuclease FokI, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   2.1e-05     0.053      49     107 ..       8      68 ..       4      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.1e-05
      FokI_C  49 pqelliqglaeaeeekekk..klksdtegssDkYvrmiaswLkklglvkkeakvvtvdlgg 107
                 p el i+ l++a+++  +k  +++s+  g+s k+   +++++k +  + k+ ++ t d + 
  EGE26331.1   8 PIELHITHLNNAQKDTKNKikTIQSEHHGASHKFKDKLCQLFKDIKTLDKKCQQSTDDHTQ 68 
                 567888889888765443345899***************************9998877655 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.4    0.0017       4.3      98     122 ..     144     168 ..     125     173 .. 0.88
   2 ?    3.8   0.0     0.012        30     154     190 ..     244     280 ..     237     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0017
                 EEETHHHHHHHHSSEEEEETTTEEE CS
       ECH_1  98 aaigGGlelalacDiviaadnasfg 122
                  a+ GG  +a ++D +ia+d a++g
  EGE26331.1 144 IAASGGYMMACTADKIIASDFAVIG 168
                 6899****************99987 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.012
                 HHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHH CS
       ECH_1 154 llgkkisaqealkvGlvdkvvpeeqlleealelaekl 190
                  +g+   +++al+ Gl+d++   +  l   l+++e  
  EGE26331.1 244 ATGEVWFGEDALELGLIDEIGTSDAYLLDQLKACEAY 280
                 5777778899999999999988876666666666654 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.37   9.5e+02      43      77 ..      11      45 ..       3      46 .. 0.70
   2 ?   11.4   0.2   0.00014      0.36      12      70 ..      41      97 ..      36     102 .. 0.81
   3 ?   -0.8   0.0      0.91   2.3e+03      33      67 ..     182     228 ..     178     232 .. 0.59
   4 ?    0.5   0.0      0.37   9.5e+02      68      87 ..     285     304 ..     274     311 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.37
                HHHTS..S-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING 43 kflkngslqknekeeelsriqeelkeaqelldeKi 77
                  +++ +++++  ++++++iq+e + a    ++K+
  EGE26331.1 11 LHITHLNNAQKDTKNKIKTIQSEHHGASHKFKDKL 45
                45566677777888888888888887777777765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00014
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS..S-HHHHHHHHHHHHHHHHHHH CS
         ING 12 LPlelqrnltelreiDakvqellkeidskiekflkngslqknekeeelsriqeelkeaq 70
                + ++l+++++ ++ +D+k+q+ +++  +k+  ++   + + + k +++++++ee+++++
  EGE26331.1 41 FKDKLCQLFKDIKTLDKKCQQSTDDHTQKAAIYV--LDFDGDIKASAVAHLREEISAII 97
                678999***********************99999..55677777777777777776665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.91
                 HHHHHHHHHHHHH............TS..S-HHHHHHHHHHHHHHHH CS
         ING  33 llkeidskiekfl............kngslqknekeeelsriqeelk 67 
                  lk+ d + e+f             +n +++  + +  ++ri+e +k
  EGE26331.1 182 FLKKHDVQFEQFTageykrtvtifgENDDEDRAKHQADIERIHELFK 228
                 55666666666666666655555555555666666666667776665 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHHHHHHHH CS
         ING  68 eaqelldeKiqlaqqaldlv 87 
                 ++++ l eKi la+q+   v
  EGE26331.1 285 RSKPTLAEKIGLAEQLGSSV 304
                 6789999*******987666 PP

>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.7   0.00014      0.36     123     171 ..      22      70 ..      17      89 .. 0.83
   2 ?    0.1   0.1      0.14   3.5e+02     282     335 ..     179     235 ..     171     241 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHHHHHHHHHHTTHH..HHHHHHHHHHH-------STCC CS
       APG17 123 elkealkesidelqaaqkkldssllefdtdlrelkkelsksksksesss 171
                 + k+++k++++e++ a +k++++l ++ +d+++l+k++++s+++ ++++
  EGE26331.1  22 DTKNKIKTIQSEHHGASHKFKDKLCQLFKDIKTLDKKCQQSTDDHTQKA 70 
                 6789*********************9999*********65555445444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.14
                 HH....HHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       APG17 282 leevgkklpeylaifkaeeefler..w.eeekekieekleeleeLrefYegFlsaYd 335
                 ++e+ kk++  ++ f+a e  ++     e++ e+ +++ +++e  +e ++gF + Y+
  EGE26331.1 179 FHEFLKKHDVQFEQFTAGEYKRTVtiFgENDDEDRAKHQADIERIHELFKGFIHKYR 235
                 344433333333333333322222223355566666777778888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1267  (0.0706676); expected 358.6 (0.02)
Passed bias filter:                      853  (0.0475766); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2382.79
//
Query:       EGE26332.1  [L=32]
Description: hypothetical protein EA1_05687 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 264.50
//
Query:       EGE26333.1  [L=620]
Description: potassium/proton antiporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-45  154.6  51.0    4.1e-45  154.2  51.0    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
     0.0054   16.7   0.1      0.013   15.5   0.1    1.6  1  CorC_HlyC       Transporter associated domain
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.037   13.9   0.0    1.6  1  TrkA_C          TrkA-C domain


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2  51.0   6.9e-49   4.1e-45       3     378 ..      13     385 ..       8     388 .. 0.90

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 6.9e-49
                     HHHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS.......HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   3 llillallvgllarrlklpeivgliiaGlllGpsglg.l.iepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliG 95 
                     lli++++++ +l+ rl++p +++++ +G+l G  g   + +++     +++ +  l  +l++ Gl++++r++r  lk+++ la lgvl+tv++ G
      EGE26333.1  13 LLIFASIMTSTLSARLGVPLLLFFLGVGMLAGEEGILgIeFAEY-NLANFIGQAALACILLDGGLRTSMRSFRVGLKPAVTLASLGVLVTVLVAG 106
                     445544444447********************876552555665.9************************************************* PP

                     HHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC..CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHH CS
  Na_H_Exchanger  96 lllylllilgiplleallfgailsatdpvvvlailk.eegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavg 189
                     +++ +  +l++++  ++l++ai+  td+++v ++l+    +++ r+  +l+ es+ nD +a++l++v+++l    + +  +++ ++  ++  +++
      EGE26333.1 107 IFTTW--LLDVDWRLGVLMAAIVGSTDAAAVFSLLRnGGVKLNDRVQATLEIESGANDPLAILLVTVMITLN--LDPTSQGIGDIIFMLISQIGI 197
                     ****9..79**************************977889******************************9..78888899999999999**** PP

                     HHHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHH...HHHHHHHHHHHHHHHHHHHHS CS
  Na_H_Exchanger 190 glllglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklsek...lesfreglfnplfFvlvGlsl 281
                     gl+lgl+ gw l++++  +   + ++ +l+l   l++++++ llg sg l++ laG+v+++++++  +++    ++sf+ +l   ++Fv++Gl +
      EGE26333.1 198 GLVLGLLSGWALSKMLPKVYLADGMYAILILSAGLIVFGITNLLGGSGFLAVYLAGVVIGNTKVRA-TEHVlrvMDSFA-WLSQAVLFVVLGLLV 290
                     ****************999999**************************************998888.555556677888.*************** PP

                     XHHHHHXXHHHHHHHHHHHHHH.HTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTT.SSTTTCSTSXHHHHHHHH CS
  Na_H_Exchanger 282 dlkvlnnhlsvlilvllilvai.llgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarel.yallivvvlftvlvqGls 374
                     +++ +   l+v+ + lli++++ +++r++avf  l  +++++re  +i++ gl rgav + la++  +  ++ ++l +++++++v++++lvqG +
      EGE26333.1 291 QPSGI---LEVIHYSLLIFIFLlFVARPIAVFSSLLPFRFGIREIGFISWVGL-RGAVPITLAIIPVTMAVPGADLaFNITFGMVILSLLVQGAT 381
                     *9999...55555555554444046****************************.***************************************** PP

                     HHHH CS
  Na_H_Exchanger 375 lkpl 378
                     ++ +
      EGE26333.1 382 IPLM 385
                     9977 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.2e-06     0.013      26      70 ..     561     604 ..     552     613 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-06
                 TTHHCT-SBHHHHHHHHH-S---TT-EEEEEET.TEEEEEEEEETT CS
   CorC_HlyC  26 elpeedyeTlgGlllellgriPkegesvevdle.glrftVlemdgr 70 
                 +l e + +T+  ++++ ++  P +g+  ev l+  ++++V+++dgr
  EGE26333.1 561 KLTEAKNQTVEEFMMQYFKTEPVKGD--EVYLNeTWSLIVRDVDGR 604
                 57787889******************..6666659*********98 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.2e-06     0.037      30      69 ..     446     485 ..     415     486 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-06
                 EEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHHHHHHH CS
      TrkA_C  30 vairRggeliipsgdtvLeeGDvllvvgspsdlaelrell 69 
                  a++R+++l++ ++dt+L+ GDv++ ++  +d   +++++
  EGE26333.1 446 FALVRHNKLVNVNEDTILKMGDVVWYAMRGDDAPSIAKIF 485
                 3445666*****************9999999988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.37
# Mc/sec: 4968.04
//
Query:       EGE26334.1  [L=45]
Description: hypothetical protein EA1_05697 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 350.96
//
Query:       EGE26335.1  [L=597]
Description: aspartyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-106  356.1   0.0   1.8e-106  355.8   0.0    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    2.8e-27   94.8   0.0    7.6e-27   93.4   0.1    1.8  2  GAD              GAD domain
    8.9e-17   60.8   0.0    2.3e-16   59.5   0.0    1.7  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    0.00028   20.5   0.4       0.14   11.6   0.2    2.7  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.8   0.0    4e-110  1.8e-106       1     314 []     120     565 ..     120     565 .. 0.98

  Alignments for each domain:
  == domain 1  score: 355.8 bits;  conditional E-value: 4e-110
                  .CCHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   1 seelrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqia 98 
                  seelrlk+r+ld+r++++++ +++r+++t+ +r+yl+++gf+++etP+L+++ t+egar+++v+sr+++++ffaL+qspql+++ll+vag+dr++qia
   EGE26335.1 120 SEELRLKYRFLDMRRPEMQERMKFRAKATSTIRRYLDDHGFLDVETPVLTRA-TPEGARDYLVPSRTRQGNFFALPQSPQLFKQLLMVAGFDRYYQIA 216
                  589*************************************************.********************************************* PP

                  EEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS-SS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  99 raFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklneigkdldkaderalv 196
                  ++FR+Ed+r+dr++ EFtq+++e+sf+++e+im+++e+l k+l+k++  ++             ++  +f+r+ty++a++      + +dk+d+r+ +
   EGE26335.1 217 KCFRDEDLRADRQP-EFTQVDIETSFLSDEEIMDITEGLTKNLFKTM-LDV-------------EFD-TFPRMTYADAMRD-----YASDKPDLRIPL 293
                  **************.********************************.444.............454.4************.....99********** PP

                  H................................................................................................. CS
                  x................................................................................................. RF
  tRNA-synt_2 197 k................................................................................................. 197
                  k                                                                                                 
   EGE26335.1 294 Klidvadimqhvefkvfsgpaqdpkgrvvalripnggnmsrkqideytkfvgiygarglayikvndasninngvekesglqspiiknmtdevlielie 391
                  ************************************************************************************************** PP

                  ......................................HS--SEEEEEEEB...........GGGSTTCBBBSTTS.......TTBBSEEEEEETTEE CS
                  ......................................xxxxxxxxxxxxx...........xxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
  tRNA-synt_2 198 ......................................keknepvfvtdfP...........aelkpFyarkeedd.......kkltesyDllingvE 239
                                                        ++++ p++v+dfP           + ++pF+++k + +       ++l+ +yD+++ng E
   EGE26335.1 392 rtdaqtgdiiffgadkakivndamgalrvkigtdlnlfTCEWAPLWVVDFPmfeetddgkwtSVHHPFTRPKGSVEelkqspeTALSIAYDMVLNGTE 489
                  ************************************************************************9998999**999************** PP

                  EEEEEEB--SHHHHHHHHHHCCHH.SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XXX CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 240 lvgGslRiedpeeleeklkskgld.eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPklt 314
                  ++gGslRi++ +++e+++++ g++ eeae kf+++++al++GapphgGl++GldRl+ml++g++sIrdviaFPk++
   EGE26335.1 490 IGGGSLRINTVDMQEAVFDALGISkEEAELKFKFLMDALRFGAPPHGGLAFGLDRLIMLMVGASSIRDVIAFPKTK 565
                  ************************99***********************************************985 PP

>> GAD  GAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         4   1.8e+04      14      50 ..      36      73 ..      30      76 .. 0.66
   2 !   93.4   0.1   1.7e-30   7.6e-27       1      95 []     310     415 ..     310     415 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4
                EEETTG-TTTSHHHHHHHH..HHHHHTTHSHCEEEEESS CS
         GAD 14 lrvpggaaklsrkeidele..efakelgakglawikveg 50
                l +++  ++l  + id+ +  +fa+  +a+  + +k++g
  EGE26335.1 36 LDMRD-REGLLQVVIDPDTpeAFATADAARSEYLLKITG 73
                55555.466667777776655788888887777777765 PP

  == domain 2  score: 93.4 bits;  conditional E-value: 1.7e-30
                 HHHHHHS.TEEEEEEEETTG-TTTSHHHHHHHHHHHHHTTHSHCEEEEESS...........GGEETTTCCCS-HHHHHHHHHHCT--TTEEEEEEEEE CS
         GAD   1 fsealks.ggsvkalrvpggaaklsrkeideleefakelgakglawikveg...........egltgpiakflteeevkklleavgaeegDillfvAdk 87 
                 fs ++++ +g+v alr+p+g  ++srk+ide+++f+ ++ga+gla+ikv++            gl++pi k +t e++ +l+e+++a++gDi++f+Adk
  EGE26335.1 310 FSGPAQDpKGRVVALRIPNG-GNMSRKQIDEYTKFVGIYGARGLAYIKVNDasninngvekeSGLQSPIIKNMTDEVLIELIERTDAQTGDIIFFGADK 407
                 77888899***********8.****************************************99************************************ PP

                 HHHHHHHH CS
         GAD  88 kktvnkal 95 
                 +k+vn+a+
  EGE26335.1 408 AKIVNDAM 415
                 ******98 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   5.1e-20   2.3e-16       2      76 .]      19     102 ..      18     105 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 5.1e-20
                      EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET..HHHHHHHTTS-TTSEEEEEEEEEECTTS.........SEEEEEEEEEEE CS
  tRNA_anti-codon   2 tvaGrvtsisdrsggkvifidlrDgtgriqvvlfr..eeatklaenlkeGdvvrvtGrvkrrpgg.........elelkveeiell 76 
                      t+aG+v+++  r++g+vif+d rD++g +qvv+++   ea+++a+  + + ++++tGrv+rr++g         ++el  +eiell
       EGE26335.1  19 TIAGWVHRR--RDHGGVIFLDMRDREGLLQVVIDPdtPEAFATADAARSEYLLKITGRVRRRYEGtenpnmvsgQVELLGKEIELL 102
                      9********..***************************************************999999999999999999999876 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.2   3.2e-05      0.14     103     159 ..     211     269 ..     195     277 .. 0.76
   2 !    5.9   0.0    0.0017       7.6     212     235 ..     538     559 ..     531     563 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
                   EEEEEEEEEBSST-SSSB-SEEEEEEE..EEEETT--HHHHHHHHHHHHHHHCTSTEEE CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveg..lvvdenvsladlkgvleellkklfgaevkv 159
                   ++  i ++fR +++ a +++eF+qv+    ++ ++  ++   g+ ++l+k + + e+++
    EGE26335.1 211 RYYQIAKCFRDEDLRADRQPEFTQVDIetSFLSDEEIMDITEGLTKNLFKTMLDVEFDT 269
                   678899******************86422455555558888888888888888777665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0017
                   EEEEEEHHHHHHHHHT-SSGHHHH CS
  tRNA-synt_2d 212 fafGlGveRlamlkygieDiRelv 235
                   +a  +G++Rl ml++g + iR+++
    EGE26335.1 538 LA--FGLDRLIMLMVGASSIRDVI 559
                   44..578**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4666.49
//
Query:       EGE26336.1  [L=307]
Description: decanoyltransferase LpxX [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-37  129.5   0.0    1.5e-37  129.4   0.0    1.0  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera


Domain annotation for each model (and alignments):
>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.4   0.0   8.5e-42   1.5e-37      26     294 ..       5     275 ..       1     276 [. 0.89

  Alignments for each domain:
  == domain 1  score: 129.4 bits;  conditional E-value: 8.5e-42
  Lip_A_acyltrans  26 lallPesvlrkilkglgrlaa.kflkrrrkiarkNLalvfpekseaerekiidksfesvgraivetirvafis.deeiakrveviglehikeal 117
                      l+ +P svl  + +  + +++ +   + ++ +++NL lv p++++a+r+k++++ +++  +  v   + + ++ +  ia+  +v  ++ + +al
       EGE26336.1   5 LRYVPLSVLHGLAA-CASYISyHCRLSIYRSIQANLILVHPKMPDAQRQKLAKQILKNQLISAVDSLKTWAMPpKWSIAQIKTVHHEDILIKAL 97 
                      56666666655544.4444443566678999*****************************************94557777777*********** PP

  Lip_A_acyltrans 118 aeeegvilllpHfanwelaglvlakqypglavvaenkknpllnqliislRerfggkllprkna.ikelikalrkgevvvllpDqdlgrkdsvfv 210
                      a+  g++ ++pH ++we+   +l + +    ++++ k n+ +++ + ++Rer++ +l+p  +   k + k l+ g   ++lpD++  ++ +  +
       EGE26336.1  98 ANPSGMLAIVPHIGTWEMMNAWLNTFGSPTIMYKPIK-NAAVDRFVLQGRERLNASLVPTDASgVKAIFKTLKAGGFSIILPDHVPDPSGGEIA 190
                      *************************999877777777.*********************98766****************************** PP

  Lip_A_acyltrans 211 pfFgepaatttspaklalktkaavipvaiirkkdgskytvsvhPaldlsste.DveqiaqalneilekeitaaPeqylwlhrrfk 294
                      pfFg ++ t t ++kla+kt+ a++ + +ir +dg +++++ +   d +     ++ ++ aln  +e+ i ++   y+w  rrfk
       EGE26336.1 191 PFFGIKTLTSTLASKLAAKTGCALVGLSCIRREDGDGFEIFCYELNDEQLYSkNTKIATTALNGAMEQMIYPHFLHYMWSYRRFK 275
                      ****************************************99965554444337777899************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2461.05
//
Query:       EGE26337.1  [L=248]
Description: glucosyltransferase Lgt6 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.063   12.6   0.2      0.076   12.4   0.2    1.2  1  Mannosyl_trans3  Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   4.2e-06     0.076      96     141 ..      88     134 ..      86     202 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-06
  Mannosyl_trans3  96 vllLDaDnvplknpdklFeseeYkktglllwkd.rdlwkrstspkfy 141
                      +l+LD D v++ n+d +F++++ ++  +++ +d ++ w+   + + y
       EGE26337.1  88 ALFLDIDIVIIDNIDAFFTHKAQHDDSVMIIRDwKKPWRMVGNSSVY 134
                      69******************998888877754423444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1957.87
//
Query:       EGE26338.1  [L=64]
Description: hypothetical protein EA1_05717 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 508.75
//
Query:       EGE26339.1  [L=240]
Description: putative nitroreductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-29  102.1   0.3      5e-29  101.5   0.3    1.3  1  Nitroreductase  Nitroreductase family
    6.3e-06   25.9   0.3      0.024   14.2   0.0    3.1  3  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.3   5.5e-33     5e-29       2     170 .]       8     218 ..       7     218 .. 0.95

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 5.5e-33
                     HH--B---B-S--.--HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGG.................. CS
  Nitroreductase   2 rkRrSiRkFddep.vpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrke.................. 77 
                     + Rr++R +d+++ ++++ + ++l+ a+ +Ps++n+q  +f+ +++ + ++kl +a+l+++ +a a++  ++++r++                  
      EGE26339.1   8 EYRRAVRDYDSNRpLDPTLVIDCLKLAQLSPSSSNMQLYEFYHITNPDMLKKLTKACLSQQAAASASQMVVFVTRQDlyrqraksallferdnik 102
                     68**********99********************************************************************************* PP

                     ..........................HHHHHHHHHHHHSSEEEEE---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGG CS
  Nitroreductase  78 ..........................elklkaqkalagapvlivivatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdea 146
                                                ++    + l+ a++l +  +++++++r + ++ +   ++++++aaq+++La+ a+G ++cp++gfd +
      EGE26339.1 103 tysppkrqvariqrmqkyygvlmptiYRTTFGVPSLRSAAFLAIQ-KFKPTYDRVSVADVRIMVHKSCALAAQTFMLAMSAAGADTCPMEGFDSK 196
                     **9999999999999999998888888888888888888887777.************************************************* PP

                     HHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase 147 aeevrkllglpdeeeivvliavGy 170
                        v++ll+lp+e e+ ++i++Gy
      EGE26339.1 197 L--VKNLLNLPKEAEVNMIISCGY 218
                     *..********************9 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.1    0.0087        78       2      22 ..       3      24 ..       2      30 .. 0.78
   2 !    5.9   0.0   0.00091       8.2     162     182 ..      29      49 ..      23      67 .. 0.85
   3 !   14.2   0.0   2.7e-06     0.024      88     148 ..     173     236 ..     161     239 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0087
                    HHHHHHH--B---B-.-S---H CS
  TM1586_NiRdase  2 lyeaiekRhsvRkYk.dealee 22
                     ++a+e R+ vR+Y+ +++l++
      EGE26339.1  3 FKQAVEYRRAVRDYDsNRPLDP 24
                    679***********84566665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.00091
                     HHHHHHHTS--GGG----EEE CS
  TM1586_NiRdase 162 eileaarlAPsAlNqqpwrfe 182
                     + l++a l+Ps+ N q ++f 
      EGE26339.1  29 DCLKLAQLSPSSSNMQLYEFY 49 
                     7899************99996 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 2.7e-06
                     HHHHHHHHHHTT-EEEEES--SST............T-S-EEEEE-BS----...-----HHHH CS
  TM1586_NiRdase  88 geqlvLkltalGlgtcWvggtykk.kkakvelkkgeklvivIalGyaktklv..eakrkpleel 148
                      + ++L ++a+G  tc + g  +k +k  ++l+k+ ++ ++I+ Gy ++k+v  e+ r p++e+
      EGE26339.1 173 AQTFMLAMSAAGADTCPMEGFDSKlVKNLLNLPKEAEVNMIISCGYRTEKGVwgERFRVPFDEV 236
                     57899*************99999989999**********************9888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1937.31
//
Query:       EGE26340.1  [L=55]
Description: hypothetical protein EA1_05727 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0083   16.0   0.0       0.01   15.8   0.0    1.1  1  RHH_1           Ribbon-helix-helix protein, copG family
  ------ inclusion threshold ------
      0.034   14.0   0.0       0.04   13.8   0.0    1.1  1  RHH_5           CopG-like RHH_1 or ribbon-helix-helix domain,
      0.035   13.9   0.0      0.042   13.7   0.0    1.3  1  Arc             Arc-like DNA binding domain
      0.041   14.4   0.0      0.048   14.2   0.0    1.2  1  CopG_antitoxin  CopG antitoxin of type II toxin-antitoxin sys


Domain annotation for each model (and alignments):
>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.2e-06      0.01       5      37 ..      12      44 ..       9      46 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.2e-06
                EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH CS
       RHH_1  5 rldeellerLdelarrrgrSrSelIReAlreyl 37
                r+d+ l+e++ + ar+ +r+ S+l+R+   +y+
  EGE26340.1 12 RVDKHLVEQFKQAARDNNRTASQLLRDCMIDYV 44
                89************************9766666 PP

>> RHH_5  CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   8.9e-06      0.04      11      42 ..      16      47 ..      13      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.9e-06
       RHH_5 11 elleeLeewAdeegRsvSnlaafLvekalrea 42
                +l e++++ A +  R+ S+l   ++ ++++++
  EGE26340.1 16 HLVEQFKQAARDNNRTASQLLRDCMIDYVKKN 47
                789*****************999998888765 PP

>> Arc  Arc-like DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.3e-06     0.042       3      29 ..       5      31 ..       3      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.3e-06
                CSEEEEEECEHHHHHHHHHHHHHTTS- CS
         Arc  3 kapkFnlRlPeevrekvkevAeengRS 29
                ++  Fn+R  + + e+ k+ A+ n R 
  EGE26340.1  5 EQTTFNMRVDKHLVEQFKQAARDNNRT 31
                5668*********************95 PP

>> CopG_antitoxin  CopG antitoxin of type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05     0.048      41      75 ..       5      39 ..       1      43 [. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
  CopG_antitoxin 41 ktksislrlpedlLealkekAnkrdvpyqslikel 75
                    ++++ ++r++++l+e+ k++A+  +   ++l++++
      EGE26340.1  5 EQTTFNMRVDKHLVEQFKQAARDNNRTASQLLRDC 39
                    56789******************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 440.88
//
Query:       EGE26341.1  [L=497]
Description: permease family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-268  891.0  16.0   2.1e-268  890.8  16.0    1.0  1  DUF3360   Protein of unknown function (DUF3360)
  ------ inclusion threshold ------
      0.013   15.0   0.8      0.013   15.0   0.8    2.8  3  DUF1129   Protein of unknown function (DUF1129)
        1.5    8.3   7.0      0.044   13.4   0.5    1.8  2  SseC      Secretion system effector C (SseC) like family


Domain annotation for each model (and alignments):
>> DUF3360  Protein of unknown function (DUF3360)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  890.8  16.0  3.5e-272  2.1e-268       2     485 .]      10     492 ..       9     492 .. 1.00

  Alignments for each domain:
  == domain 1  score: 890.8 bits;  conditional E-value: 3.5e-272
     DUF3360   2 dsdseeksyrelhkpasefekredylehelqimkprrwglnlpgrdyrfeledlvpalagtigkvvmvsavvaafaaglglgeefvievvrvelliaal 100
                 d++s +ksyrelh+p+s+fekredyl+helqim+prrw++nlp+rdyrfeled++pa+agtigk+vmv+a++aafaa+lglge+fv+e+vr+e++iaa 
  EGE26341.1  10 DNHSLNKSYRELHRPSSSFEKREDYLKHELQIMQPRRWRINLPFRDYRFELEDTIPAMAGTIGKIVMVGAMAAAFAAPLGLGEAFVLENVRYEMIIAA- 107
                 78999********************************************************************************************9. PP

     DUF3360 101 lfviiasgflnpranlagthgplipligiialagahplalailigvfglilalvkggsklvnltskgvaggllvylgfvglisqikkllewaeglslsy 199
                 +fv+i+s+f++p++nl+gthgpl+pli+i+++ag+hpla+++ligvfglilalvkggs +++lts+gvaggll+ylgfvgli+q+kkl++wa++++l++
  EGE26341.1 108 FFVLIFSSFILPTSNLPGTHGPLLPLIPIVVAAGGHPLAFGVLIGVFGLILALVKGGSLMTRLTSNGVAGGLLLYLGFVGLIGQVKKLITWADAIGLPH 206
                 *************************************************************************************************** PP

     DUF3360 200 ialvvllvtiilyallaklkkrwlaiplcsllavvlalalgadlkfktepglpnlnplywwgeetgwqlglptlehfiavlpfailavamwspdflghr 298
                 ia++++l+tii+yall++++krwla+p++++la++la++lga+++fktepglp+l+p+ywwge+tgw+lglp+l++fi+v+pfa+lavamw+pdflgh+
  EGE26341.1 207 IAFIIILSTIIMYALLEHWQKRWLAVPIGCMLAGFLAFILGAPFEFKTEPGLPPLSPMYWWGENTGWTLGLPDLKAFIVVFPFAVLAVAMWTPDFLGHQ 305
                 *************************************************************************************************** PP

     DUF3360 299 vfqelnypkeaekvlmdvddtmvtasirqlvgsllgggnltsswgtylipaaiakrpipagaillgllcivvavlgypmdlavwqpvlsvallvgvflp 397
                 vfq+++ypk++e+++m++ddt++t+s+rq+vgs+lgg+n+tsswgty++pa+iakrpipaga+l++++civvav+gypmdlavwqpvls+al+v+v++p
  EGE26341.1 306 VFQKISYPKHSERTHMSIDDTTITCSLRQMVGSVLGGANFTSSWGTYIVPASIAKRPIPAGAALTAIFCIVVAVWGYPMDLAVWQPVLSTALIVAVYVP 404
                 *************************************************************************************************** PP

     DUF3360 398 lleaglqmvketkdsqsagivifasalvnpvlawaltmlldnlgligdkerakklsladrvvipgialivlllalaavgllegipall 485
                 lleag++m++++k++qsa+iv+f+salvnpv++w+ltm+ldnlgligdker+++l+l++rv+ip+i ++vl+la+a+vg+++g+pal+
  EGE26341.1 405 LLEAGMEMTRKGKTTQSASIVVFSSALVNPVFGWSLTMMLDNLGLIGDKERSRQLGLSGRVIIPVIGFVVLCLAMASVGMFPGVPALI 492
                 **************************************************************************************97 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.25   1.5e+03     151     185 ..     103     138 ..      97     142 .. 0.64
   2 ?   -3.5   4.0      0.99   5.9e+03     113     171 ..     167     223 ..     144     248 .. 0.55
   3 ?   15.0   0.8   2.2e-06     0.013      77     172 ..     388     487 ..     383     493 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.25
     DUF1129 151 lilllllvvwlvlftlval.lpaviNpvLpplvlii 185
                 +i+++++v+++  f+l ++ lp +  p Lp +  ++
  EGE26341.1 103 MIIAAFFVLIFSSFILPTSnLPGTHGPLLPLIPIVV 138
                 455556666666666655559999998887666554 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.99
     DUF1129 113 litlllvalvgGlamvlvyrlltrekkkkkrpplwkrllilllllvvwlvlftlvallp 171
                 ++ l++ ++ gGl+++l    l    + kk + +   + +  ++++++l  +++ all 
  EGE26341.1 167 MTRLTSNGVAGGLLLYLGFVGLI--GQVKKLITWADAIGLPHIAFIIILSTIIMYALLE 223
                 45566666666666655443333..2455555555555555555555555555555544 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 2.2e-06
     DUF1129  77 pwlmalDnsLlllalfallfgilalfskkkqtasiGlitl..llvalvgGlamvlvyrlltre..kkkkkrpplwkrllilllllvvwlvlftlvallp 171
                 +w+ +l ++L++ + + ll + + +  k k+t+s+++++   +lv  v+G+ ++++ + l     k+++++ +l  r++i ++ +vv+ ++++ v+++p
  EGE26341.1 388 VWQPVLSTALIVAVYVPLLEAGMEMTRKGKTTQSASIVVFssALVNPVFGWSLTMMLDNLGLIgdKERSRQLGLSGRVIIPVIGFVVLCLAMASVGMFP 486
                 69999***********************999999555543115666789*******99987666588888899999*********************98 PP

     DUF1129 172 a 172
                  
  EGE26341.1 487 G 487
                 6 PP

>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.1      0.86   5.1e+03     138     160 ..      73      85 ..      63      98 .. 0.49
   2 ?   13.4   0.5   7.4e-06     0.044      63     119 ..     147     206 ..     146     370 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.86
        SseC 138 avvaavavvaavvavgsaakgaa 160
                            +v+vg++a++ a
  EGE26341.1  73 K----------IVMVGAMAAAFA 85 
                 2..........233333333333 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 7.4e-06
        SseC  63 fGwilaivsvvagalkvgaslll.aavgvAgglmdaa..lgiadevvaaattkslideem 119
                 fG +++++ ++ + +k+g+ +   ++ gvAggl++    +g  ++v++ +t +++i+  +
  EGE26341.1 147 FGVLIGVFGLILALVKGGSLMTRlTSNGVAGGLLLYLgfVGLIGQVKKLITWADAIGLPH 206
                 89*****************9999*********9876559999999999999998887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3590.99
//
Query:       EGE26342.1  [L=61]
Description: hypothetical protein EA1_05737 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-21   74.3   1.0      5e-21   74.2   1.0    1.1  1  YacG      DNA gyrase inhibitor YacG


Domain annotation for each model (and alignments):
>> YacG  DNA gyrase inhibitor YacG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   1.0   2.8e-25     5e-21       2      49 ..       7      53 ..       6      56 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 2.8e-25
        YacG  2 kCPtCkkevewseenpfrPFCSeRCkliDLGeWaseeyripaeeaeed 49
                 CP C++ ++ws+ np rPFCS+RCkliDLG+Was+ey i+++e ++ 
  EGE26342.1  7 PCPLCQAVTTWSD-NPNRPFCSKRCKLIDLGAWASDEYLIAGDELPSP 53
                6***********9.***************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 450.89
//
Query:       EGE26343.1  [L=82]
Description: hypothetical protein EA1_05742 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0011   17.7   0.1       0.08   11.6   0.0    2.0  2  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0   0.00054       9.8      10      32 ..      13      35 ..       6      40 .. 0.84
   2 !   11.6   0.0   4.5e-06      0.08      88     109 ..      52      73 ..      36      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.00054
                 CEEEEEEEBTEEEETTS-EEEES CS
  Aminotran_3 10 llvitkaeGvyltdvdgkrylDl 32
                 ++   ++eG+yl+ +dg  yl l
   EGE26343.1 13 PISFVRGEGSYLYTKDGTAYLAL 35
                 57889***************966 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4.5e-06
                  SEEEEESSHHHHHHHHHHHHHH CS
  Aminotran_3  88 dkvflansGseAvetAlKlark 109
                   k f+ansG++A+e  lKla++
   EGE26343.1  52 CKYFFANSGAKANECVLKLAIS 73 
                  589*****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 658.10
//
Query:       EGE26344.1  [L=299]
Description: hypothetical protein EA1_05747 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-50  169.8  22.4    2.1e-49  168.1  22.4    1.7  1  ThrE      Putative threonine/serine exporter
  ------ inclusion threshold ------
        0.6   10.3  17.8        1.1    9.4  17.8    1.5  1  ThrE_2    Threonine/Serine exporter, ThrE


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1  22.4   2.3e-53   2.1e-49       1     240 [.      41     291 ..      41     292 .. 0.93

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 2.3e-53
        ThrE   1 dlilrlGeiLlesGaetyrvedtmkriaralgleevevfvtptsiivsvdeeeesittvrrvrsrgvnleklsevnelsreiaag........eislee 91 
                 +l++r++ +L+++Gae+  v+d  kr+++alg++ ve+  +++++++++  ++++ittvr+  ++g+n++ l ++++++ +++++        +     
  EGE26344.1  41 RLCIRCALLLMQYGAESVVVVDLTKRLGAALGIDGVECGLSFNAVTLTTLYQGRCITTVRNTVHQGINVSILVQIQQIILSAENHqanqshclN----- 134
                 68***********************************************779***************************999999555555552..... PP

        ThrE  92 a..........eerLdeIerskpryprwlvvlaaglaaaafallfggdwidflvaflagllggllrlllakrglnsfvleavaaflasllallavslgl 180
                            e+ +d+I +    y++ lv +++g+++a+fa l g++++ +l++f+a++++++lr++l k ++n+fv+ +++af+a+lla+la+ l+l
  EGE26344.1 135 TqshdacissvEQGFDAIYQT--VYSNHLVSFFVGVSCASFAYLNGATLVIALITFIASFVAMRLRMYLLKQHFNPFVVAMITAFTATLLAALAYFLNL 231
                 03333355555*******554..5*************************************************************************** PP

        ThrE 181 glnpdaiiigsillLvPGlpltnavrDllsgdlvsGlaRlveailialaiafGivlalsl 240
                 g n+d+++++s+llLvP +p++na+ D+l+g++++G+ R++ a +++l++++Giv++l +
  EGE26344.1 232 GTNADIAVAASVLLLVPSFPIINALSDILKGYMNMGVGRWMFATMLTLSACVGIVMTLIF 291
                 ********************************************************9876 PP

>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  17.8   0.00012       1.1       3     127 ..     164     289 ..     159     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
      ThrE_2   3 ilafiaalgfavifnvpkrallvagllGavgwlvylllmelgvsialasflaalaigllsellA.rriktPvtvflipgllplvPGlaaYktvlslvqg 100
                 +++ + +++fa+++ +     l++ +   v+  ++++l++++ +  +  +++a++ +ll+ l+    + t + + + +++l lvP   + +++  +++g
  EGE26344.1 164 FFVGVSCASFAYLNGATLVIALITFIASFVAMRLRMYLLKQHFNPFVVAMITAFTATLLAALAYfLNLGTNADIAVAASVLLLVPSFPIINALSDILKG 262
                 5666788899999999999999999999999999999999999999999999998888876544144668888999999******************** PP

      ThrE_2 101 nleeavengiealliagalavGlvlvs 127
                 ++++ v   + a + +++ +vG+v+  
  EGE26344.1 263 YMNMGVGRWMFATMLTLSACVGIVMTL 289
                 ***********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1190  (0.0663729); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2164.39
//
Query:       EGE26345.1  [L=153]
Description: hypothetical protein EA1_05752 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-25   87.6  18.0    8.5e-25   87.4  18.0    1.0  1  ThrE_2           Threonine/Serine exporter, ThrE
  ------ inclusion threshold ------
       0.34   11.4   7.3       0.43   11.1   3.1    2.2  2  Phage_holin_3_1  Phage holin family (Lysis protein S)
       0.48    9.7  19.6        1.8    7.9  18.9    2.2  1  ThrE             Putative threonine/serine exporter


Domain annotation for each model (and alignments):
>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4  18.0   1.4e-28   8.5e-25       2     127 ..      10     143 ..       9     145 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 1.4e-28
      ThrE_2   2 vilafiaalgfavifnvpkrallvagllGavgwlvylllmelgvsialasflaalaigllsellArriktPvtvflipgllplvPGlaaYktvlslvqg 100
                 ++l++i ++g++++f +pk++++ + ++ a+g+ +  +++ +gv++++a+f++a+a ++l+  +A+r+ +P + +++p+l++++PG+aaYk++ s+vq 
  EGE26345.1  10 IVLSCIITVGWCLMFTLPKQYIMHCMMVTALGFGLKQVMVIFGVHLVVATFFGAMAGSFLGVHFAQRHGLPPKALIVPSLICMMPGIAAYKAMVSMVQI 108
                 689**********************************************************************************************95 PP

      ThrE_2 101 n........leeavengiealliagalavGlvlvs 127
                          +  ++  ++ea++i+ al++Gl+++ 
  EGE26345.1 109 GyfgfdmdlFIVMMRHFFEAIFIISALVLGLSIPG 143
                 5566666678888999****************986 PP

>> Phage_holin_3_1  Phage holin family (Lysis protein S)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.1   7.1e-05      0.43      42      87 ..      27      73 ..       3      77 .. 0.85
   2 ?    2.4   0.1     0.037   2.2e+02      64      86 ..      92     114 ..      83     128 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.1e-05
  Phage_holin_3_1 42 wkkvlleallCgllalavrsllellglpaslavviggliG.flGvek 87
                      k+ ++ +++  +l++ +++++ ++g++  +a+++g++ G flGv  
       EGE26345.1 27 PKQYIMHCMMVTALGFGLKQVMVIFGVHLVVATFFGAMAGsFLGVHF 73
                     68999**********************************9999*975 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.037
  Phage_holin_3_1  64 ellglpaslavviggliGflGve 86 
                      ++ g++a  a+v  + iG++G +
       EGE26345.1  92 MMPGIAAYKAMVSMVQIGYFGFD 114
                      33377777777778889999987 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  18.9    0.0003       1.8     110     210 ..       8     107 ..       4     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0003
        ThrE 110 lvvlaaglaaaafallfggdwidflvaflagllggllrlllakrglnsfvleavaaflasllallavslglglnpdaiiigsillLvPGlpltnavrDl 208
                 ++++ ++++ ++ +l+f    + ++ ++++++lg+ l++++  +g+  +v+++++a+  s+l++ +++   gl p+a+i+ s++ + PG++   a+  +
  EGE26345.1   8 QTIVLSCIITVGWCLMFTLPKQYIMHCMMVTALGFGLKQVMVIFGVHLVVATFFGAMAGSFLGVHFAQR-HGLPPKALIVPSLICMMPGIAAYKAMVSM 105
                 67788889999999999999999999*************************************999994.47889****************99998877 PP

        ThrE 209 ls 210
                 ++
  EGE26345.1 106 VQ 107
                 64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1184.32
//
Query:       EGE26346.1  [L=266]
Description: ubiquitous surface protein A1 UspA1, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-15   56.4   4.8      2e-15   56.4   4.8    3.6  4  DUF1079      Repeat of unknown function (DUF1079)
      1e-12   47.9   5.7      2e-12   47.0   5.7    1.5  1  YadA_anchor  YadA-like membrane anchor domain
  ------ inclusion threshold ------
       0.34   11.0   2.7        0.6   10.2   0.5    2.5  3  HTH_54       ParA helix turn helix domain
       0.54   10.3  23.4      0.043   13.9  10.3    2.5  3  TPR_MLP1_2   TPR/MLP1/MLP2-like protein
          5    7.1  13.7          5    7.1   2.4    2.5  2  LOH1CR12     Tumour suppressor protein


Domain annotation for each model (and alignments):
>> DUF1079  Repeat of unknown function (DUF1079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       3.6   1.3e+04      12      19 ..       9      15 ..       5      16 .. 0.73
   2 !   56.4   4.8   5.6e-19     2e-15       1      31 []      19      48 ..      19      48 .. 0.99
   3 ?   -2.6   1.4       2.1   7.4e+03      10      21 ..     102     112 ..      96     116 .. 0.67
   4 ?    1.6   0.7     0.099   3.6e+02       1      14 [.     152     165 ..     152     169 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.6
     DUF1079 12 dkkssDAI 19
                +k + D I
  EGE26346.1  9 AKNQAD-I 15
                788888.6 PP

  == domain 2  score: 56.4 bits;  conditional E-value: 5.6e-19
     DUF1079  1 ladiyELadQydkkssDAIdaLaKASaeNTd 31
                +++iyELa+Q+d++ssD I++LaK Sa+NTd
  EGE26346.1 19 INNIYELAQQQDQHSSD-IKTLAKVSAANTD 48
                8****************.************8 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.1
     DUF1079  10 QydkkssDAIda 21 
                 Q  + + D I +
  EGE26346.1 102 QILQNQAD-ITT 112
                 44577888.755 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.099
     DUF1079   1 ladiyELadQydkk 14 
                 l+ i+E  + +d+k
  EGE26346.1 152 LNRINETNNRQDQK 165
                 7899********98 PP

>> YadA_anchor  YadA-like membrane anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   5.7   5.5e-16     2e-12       1      60 []     205     265 ..     205     265 .. 0.99

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 5.5e-16
  YadA_anchor   1 pqvslpgkfsvgaGvGgYkgqsAvAvGasars.ngnlvvklgvavssggsvgggvGvgyqw 60 
                  p++s++g ++v +G G+++gq+Av +Ga+  s +g+ ++k+g ++s++g+ +ggvG +y+w
   EGE26346.1 205 PSPSRAGEHHVLFGSGYHNGQAAVSLGAAGLSdTGKSTYKIGLSWSDAGGLSGGVGGSYRW 265
                  89**********************************************************9 PP

>> HTH_54  ParA helix turn helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.2   4.5e+03       8      31 ..      46      67 ..      39      76 .. 0.65
   2 ?   10.2   0.5   0.00017       0.6      30      75 ..     101     149 ..      67     155 .. 0.77
   3 ?   -0.9   0.0      0.49   1.8e+03      44      79 ..     166     201 ..     151     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
      HTH_54  8 lteqiqkqkkElkedeyyqtyska 31
                 t+ i k+k+E +    ++t +k+
  EGE26346.1 46 NTDRIAKNKAEAD--ASFETLTKN 67
                5677777777754..335555555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00017
      HTH_54  30 kaalaklpkls..rrkvdkavsemeaeGyefekkeag.stekYaltiqn 75 
                 k  l+++  ++  + ++++ ++   a+G+e+ek++ag +t+k  l +qn
  EGE26346.1 101 KQILQNQADITtnKTAIEQNINRTVANGFEIEKNKAGiATNKQELILQN 149
                 5566666666433889********************9556777788776 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.49
      HTH_54  44 vdkavsemeaeGyefekkeagstekYaltiqnvidl 79 
                 +d+   +++++G +f+ + +   ++ a  i n+i +
  EGE26346.1 166 IDQLGYALKEQGQHFNNRISAVERQTAGGIANAIAI 201
                 555555678899999988877777777777777665 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  10.3   1.2e-05     0.043      31     114 ..       9      91 ..       2     103 .. 0.85
   2 ?    6.6   4.9    0.0021       7.4      41     108 ..      57     124 ..      56     133 .. 0.90
   3 ?    0.6   6.2      0.15   5.4e+02      30     118 ..     103     190 ..      99     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
  TPR_MLP1_2  31 lekqaeiakeaqqkYe..relvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekried 114
                  ++qa+ia++ ++ Ye  ++  +h++d+k+l+++ +     +++ia+ kaea++  ++l ++++ + eq e+l ++ + +++ +e 
  EGE26346.1   9 AKNQADIANNINNIYElaQQQDQHSSDIKTLAKVSAA---NTDRIAKNKAEADASFETLTKNQNTLIEQGEALVEQNKAINQELEG 91 
                 589************9556777899999999999876...5689999999999999999999999999999999999999998876 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0021
  TPR_MLP1_2  41 aqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelsel 108
                 a  ++e+   ++++ +++ +al e+ + +++e++ + a a+   +++ ++++ +++ k+++e++++ +
  EGE26346.1  57 ADASFETLTKNQNTLIEQGEALVEQNKAINQELEGFAAHADIQDKQILQNQADITTNKTAIEQNINRT 124
                 5667777788899999***********************************************99865 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.15
  TPR_MLP1_2  30 dlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneq 118
                  l++qa+i+++     e+ ++   ++  e+++ ++ +++ k+e+   ++++++ +++++++ +++++   +l+++ + +++ri  ++ q
  EGE26346.1 103 ILQNQADITTNKTA-IEQNINRTVANGFEIEKNKAGIATNKQELILQNDRLNRINETNNRQDQKIDQLGYALKEQGQHFNNRISAVERQ 190
                 56777777777666.88888888888888888888888888888888888888888888888888888888888888888888888777 PP

>> LOH1CR12  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.4    0.0014         5      47      93 ..       1      46 [.       1      74 [. 0.84
   2 ?    4.2   4.7     0.011        40      38     110 ..      94     166 ..      62     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0014
    LOH1CR12 47 vAadqaklverikevdakiitllaelrekqkqyasyaealskvnels 93
                vA++qa ++++  ++ ++i+++  el ++q+q++s +++l+kv   +
  EGE26346.1  1 VATNQADIAKNQADIANNINNI-YELAQQQDQHSSDIKTLAKVSAAN 46
                89***************99875.678999*************98654 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.011
    LOH1CR12  38 eHlavcAkavAadqaklverikevdakiitllaelrekqkqyasyaealskvnelsdqlsriqiiledivpll 110
                  H ++  k++  +qa ++ +   ++++i++ +a+  e +k+ a+ a + +++   +d l ri+   + + + +
  EGE26346.1  94 AHADIQDKQILQNQADITTNKTAIEQNINRTVANGFEIEKNKAGIATNKQELILQNDRLNRINETNNRQDQKI 166
                 67888889999*****************************************999999**9998766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2154  (0.120141); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 1900.57
//
Query:       EGE26748.1  [L=202]
Description: tail assembly protein K, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-14   53.4   0.2    3.4e-14   52.7   0.2    1.3  1  NLPC_P60  NlpC/P60 family
    3.3e-05   23.7   0.1    6.2e-05   22.8   0.1    1.5  1  Prok-JAB  Prokaryotic homologs of the JAB domain
  ------ inclusion threshold ------
       0.25   11.3   0.2       0.25   11.3   0.2    1.7  2  RadC      RadC-like JAB domain


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.2   5.7e-18   3.4e-14       1     105 []      61     193 ..      61     193 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 5.7e-18
                 T-BB-TT--BTTEB-HHHHHHHHHHTT.T----SSHHHH................CCCSEE..EEGGG--TTEEEEESG..TGGESEEEEEE....... CS
    NLPC_P60   1 gkpYrwGGkspsgfDCsglvryafaka.gielprssgeq................eaagkkkeiskselkrGDLvffkt..kkgisHvgiYl....... 73 
                 g++Y +G     + DC +lvr+++ ++ +i+lp+  +++                ++ag+ k+  +++l++ D+++ ++   ++++H+ iY+       
  EGE26748.1  61 GREYHHG-----VQDCYSLVRDYYHRElDIHLPDFHRTDgwwekehhlplyennfTKAGFIKMQDETDLQKHDVILCRVgrTHHVNHALIYVgdgklks 154
                 7899999.....99*****************************************99**********************98999*************** PP

                 .......ETTEEEEEETTEEEEEETTSTTBHSCEEECCE CS
    NLPC_P60  74 .......gngkmlhassekvsvsslsekywkkrllgvrr 105
                        gn  +lh++ +++sv++++++ w++r++ v+r
  EGE26748.1 155 ettpdcvGNALILHHPHGSLSVREIYGDNWQRRTVMVVR 193
                 **********************************99876 PP

>> Prok-JAB  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1     1e-08   6.2e-05      72      92 ..       3      23 ..       1      43 [. 0.88

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1e-08
    Prok-JAB 72 giwHSHpggsarPSetDrrda 92
                +i+HSHp+g a+PSe Dr ++
  EGE26748.1  3 AIVHSHPDGNAEPSEVDRVQM 23
                79****************987 PP

>> RadC  RadC-like JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   4.2e-05      0.25      69      85 ..       4      20 ..       2      26 .. 0.90
   2 ?   -3.5   0.1       1.6   9.8e+03      66      75 ..     164     173 ..     161     178 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.2e-05
                EEEE-TTS--S--HHHH CS
        RadC 69 laHnhPsgdlepSeeDi 85
                ++H hP g++epSe D+
  EGE26748.1  4 IVHSHPDGNAEPSEVDR 20
                79************997 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.6
                 EEEEEEE-TT CS
        RadC  66 avilaHnhPs 75 
                 a+il H h s
  EGE26748.1 164 ALILHHPHGS 173
                 6677776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1660.86
//
Query:       EGE26749.1  [L=137]
Description: hypothetical protein EA1_04667 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-11   41.8   0.0    1.2e-10   41.6   0.0    1.3  1  HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antit
    8.7e-09   35.4   0.0    1.2e-08   34.9   0.0    1.2  1  HicB-like_2      HicB_like antitoxin of bacterial toxin-antit
     0.0012   18.7   0.1     0.0021   17.9   0.1    1.3  1  MarR_2           MarR family
  ------ inclusion threshold ------
      0.014   15.3   0.4      0.023   14.7   0.4    1.3  1  HTH_37           Helix-turn-helix domain
      0.022   14.4   0.0      0.041   13.5   0.0    1.4  1  CENP-B_N         CENP-B N-terminal DNA-binding domain
      0.046   13.8   0.0      0.076   13.1   0.0    1.4  1  HTH_3            Helix-turn-helix
      0.063   13.4   0.0       0.13   12.4   0.0    1.5  2  HTH_28           Helix-turn-helix domain
      0.082   12.9   0.0       0.14   12.1   0.0    1.4  1  MarR             MarR family
        0.1   12.6   0.0       0.19   11.8   0.0    1.4  1  HTH_29           Winged helix-turn helix
       0.11   12.7   0.0        0.5   10.5   0.0    1.9  2  Sigma70_r3       Sigma-70 region 3
       0.15   12.1   0.0       0.24   11.4   0.0    1.4  1  HTH_Crp_2        Crp-like helix-turn-helix domain
       0.15   11.9   0.1       0.24   11.2   0.1    1.3  1  DUF746           Domain of Unknown Function (DUF746)


Domain annotation for each model (and alignments):
>> HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0     8e-14   1.2e-10       1      78 [.       3      79 ..       3     127 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 8e-14
  HicB_lk_antitox  1 ypiaiekdedsaygvvvPdlpGcfsagdtleeaianakeaielhlegliedgeeipepssieellanpeyaggiwalv 78
                     yp+++ +d d  + v++ d+p ++s gdt++ea+++a++a+ + +e   ed++++p+ps+ ++  +       +wa v
       EGE26749.1  3 YPVTLTPDTD-GFCVTFRDIPEAISQGDTIDEALEMAQDALMVAMEFYFEDNRAVPMPSQAQDGEHLVSLPPSVWAKV 79
                     8999998877.8***********************************************9988766666666666655 PP

>> HicB-like_2  HicB_like antitoxin of bacterial toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   8.2e-12   1.2e-08       2      79 ..       3      78 ..       2      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 8.2e-12
  HicB-like_2  2 yPasstvdeeseeyeityrdfdelnavayseedveleaseilkvGleeeieekrliPaPselqsGdiivylPilvrlk 79
                 yP + t d  ++ + +t+rd +e  +   + ++    a++ l v +e ++e+ r +P+Ps+ q G+ +v lP+ v  k
   EGE26749.1  3 YPVTLTPD--TDGFCVTFRDIPEAISQGDTIDEALEMAQDALMVAMEFYFEDNRAVPMPSQAQDGEHLVSLPPSVWAK 78
                 67666655..56799***************9998777***********************************988666 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   1.4e-06    0.0021       8      43 ..      79     111 ..      77     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.4e-06
                 HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2   8 arvLaaLgrrpgrdltvgelarrlglsksavsrilk 43 
                   +L++  +     ++++ela+r+g+ ++ v+r+++
  EGE26749.1  79 VLLLNEMLCQN---VSQAELAKRMGIIPQQVTRLVD 111
                 57899999999...9*******************97 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.4   1.5e-05     0.023      30      77 ..      88     134 ..      77     137 .] 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
                 CT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEEEEE CS
      HTH_37  30 relsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqkvei 77 
                 ++ sq+e+a+++gi   +v+rl +       +d+L n+ ++lG+++++
  EGE26749.1  88 QNVSQAELAKRMGIIPQQVTRLVD-LSHATKIDTLANAFAKLGKQLQV 134
                 578********************5.455678**************987 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.8e-05     0.041      21      44 ..      88     111 ..      85     117 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-05
                 CTT-HHHHHHHHT--CCHHHHHHH CS
    CENP-B_N  21 egeSkaelarrfnvpestlsdilk 44 
                 ++ S aela+r ++ ++++ + ++
  EGE26749.1  88 QNVSQAELAKRMGIIPQQVTRLVD 111
                 567****************99876 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.1e-05     0.076       8      29 ..      88     109 ..      84     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.1e-05
                 TTHHHHHHHHHHTSSHHHHHHH CS
       HTH_3   8 lglsqeeLAeklGvsrstisri 29 
                 ++ sq+eLA+++G+ +++++r+
  EGE26749.1  88 QNVSQAELAKRMGIIPQQVTRL 109
                 689**********989999887 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.1   7.7e+03      10      19 ..      26      35 ..      23      37 .. 0.68
   2 ?   12.4   0.0   8.9e-05      0.13       7      44 ..      83     121 ..      78     127 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.1
      HTH_28 10 aaGhsvreaA 19
                 +G++++ea 
  EGE26749.1 26 SQGDTIDEAL 35
                4677999985 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.9e-05
      HTH_28   7 kllaaGh.svreaArelgisrrtvyrWikryeegGiagL 44 
                  +++ ++ s++e+A+++gi +++v r++    +  i+ L
  EGE26749.1  83 NEMLCQNvSQAELAKRMGIIPQQVTRLVDLSHATKIDTL 121
                 56774545******************9987666666655 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.7e-05      0.14      17      39 ..      89     111 ..      76     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.7e-05
                 TEEHHHHHHHHTS-HHHHHHHHH CS
        MarR  17 plsvseLakklgvskstvtrvld 39 
                 + s++eLak++g+ +  vtr++d
  EGE26749.1  89 NVSQAELAKRMGIIPQQVTRLVD 111
                 56677****************98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00013      0.19       5      45 ..      80     122 ..      77     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
      HTH_29   5 llllaeGvs..tvsqiAkllglsrrtvyrwlkrfeegGlaall 45 
                 lll +  +   + +++Ak++g+ +++v r +++ +++ ++ l 
  EGE26749.1  80 LLLNEMLCQnvSQAELAKRMGIIPQQVTRLVDLSHATKIDTLA 122
                 5555555545568999*****************9998888775 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1   1.6e+03      37      57 ..      31      51 ..      28      57 .. 0.74
   2 ?   10.5   0.0   0.00033       0.5      20      44 ..      89     113 ..      82     116 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
                HHHHHHHHXXXEETTXBSSSS CS
  Sigma70_r3 37 VrevleaarepvSldlpvgee 57
                + e+le+a++++ + ++   e
  EGE26749.1 31 IDEALEMAQDALMVAMEFYFE 51
                678899999888887776665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00033
                 XXXHHHHHHHHTXXHHHHHHHHHHH CS
  Sigma70_r3  20 ePtpeEiAeeLglseekVrevleaa 44 
                 + + +E+A+++g+ +++V ++++++
  EGE26749.1  89 NVSQAELAKRMGIIPQQVTRLVDLS 113
                 56899**************998876 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.24      20      41 ..      88     109 ..      67     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                 EEHHHHHHHHHTTSSHHHHHHH CS
   HTH_Crp_2  20 lpltqeelAsmlGltretvsri 41 
                  +++q+elA ++G+ +++v+r+
  EGE26749.1  88 QNVSQAELAKRMGIIPQQVTRL 109
                 589******************7 PP

>> DUF746  Domain of Unknown Function (DUF746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00016      0.24       7      34 ..      84     111 ..      78     117 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
      DUF746   7 rlLsqplslaeaadllgtdegiiakwvr 34 
                  +L q++s ae+a+++g  ++ + ++v+
  EGE26749.1  84 EMLCQNVSQAELAKRMGIIPQQVTRLVD 111
                 68***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1191.25
//
Query:       EGE26750.1  [L=75]
Description: hypothetical protein EA1_04672 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 656.95
//
Query:       EGE26751.1  [L=28]
Description: hypothetical protein EA1_04677 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 238.18
//
Query:       EGE26752.1  [L=52]
Description: hypothetical protein EA1_04682 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 414.63
//
Query:       EGE26753.1  [L=366]
Description: ABC-type multidrug transport system, permease component [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-27   95.1  21.4    1.7e-26   93.1  21.4    1.7  1  ABC2_membrane_3  ABC-2 family transporter protein
    9.1e-09   35.0  24.7    4.2e-08   32.9  15.8    3.2  3  ABC2_membrane    ABC-2 type transporter
  ------ inclusion threshold ------
      0.017   14.4  13.4       0.49    9.6   0.1    2.1  2  ABC2_membrane_2  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1  21.4   2.9e-30   1.7e-26       3     344 ..      20     356 ..      19     357 .. 0.87

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 2.9e-30
  ABC2_membrane_3   3 fliitlllPiilvlllglifsnsveddentpiavvdednsslsqqlvealeaspsvelvyevdseeeakkalkngdidgilvipkgfskdllkg 96 
                      ++++t +l ++++++++ + +++   + ++pi +vde++s+l+q ++   + +p++++   v++  +a+ ++++ ++dgil +p++ s+++  g
       EGE26753.1  20 SIFLTMVLSVVFYGFFYPFAYQAQR-PADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPDNLSQSIHHG 112
                      688999*************999995.******************************************************************** PP

  ABC2_membrane_3  97 esatvtvlinssnlnsskailnalns.llqqlnasalvlqseatstsaninvestql..eeelsnvasflvgliliilifitasfiavsiveEk 187
                      ++  v ++++s++++ +++i   l s l  +++++  +    ++   ++++  ++q   +++ls++ s+++++++ i+++ t++  ++++v   
       EGE26753.1 113 QTGGVGLYLSSAYFLRTQNIGAGLVSsLHATIIQELGQ---VTQTRHKPMPELIHQSalFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGY 203
                      ***********************888799999988775...444444555555555555*************8888888888777777787777 PP

  ABC2_membrane_3 188 esrikelqlvsgvsplqywlskilgdflvyllqlllilllafgl.....gipfg.nlglllllfllfglayialgyllsslfknsetaqilifi 275
                      ++r+      s           +l++++v+l++  l ++++fg+      +p g n++ ++l + +f  ++i +++l+ s + + +++ +l+++
       EGE26753.1 204 RQRLWR---AS--------ACDFLAIYAVALTIGCLSCFYLFGFvfwwhDYPRGgNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIF 286
                      776553...34........345666777777776666666666666666688888999999****************************99999 PP

  ABC2_membrane_3 276 villlsgffgglfpledlpsalkwifsiiPffapglgllrli.tgdplweillsliilalfavvylllal 344
                       +++l+++ g+ +pl ++p++l+ ++  +P+++  +++++l+ +g+++ ++++ +++la  av++l +a+
       EGE26753.1 287 SSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNqMGVSIQDVWQKMAYLASVAVLCLGVAF 356
                      999999999999*****************************88**********************99887 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.017        99      12      41 ..      13      41 ..       9      74 .. 0.81
   2 !    7.7   4.2   0.00035       2.1      86     150 ..     164     234 ..     113     235 .. 0.67
   3 !   32.9  15.8   6.9e-12   4.2e-08      98     207 ..     216     326 ..     215     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.017
  ABC2_membrane 12 lqrwrdpslgllwrliqplllalvfgtvfg 41
                   l +++d+s++ l+++++ +++++++ +++ 
     EGE26753.1 13 LDIIKDRSIF-LTMVLSVVFYGFFYPFAYQ 41
                   6677888777.8899999999999988887 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00035
  ABC2_membrane  86 lvsplyslsayvlakvlvelpvsllqalifllivyflvgldls..rf....flflllllltalaasslgll 150
                    + s l+ + + + ++++  ++ +++  +i+l ++ ++ g++    r     fl+++++ lt+ ++s++ l+
     EGE26753.1 164 HQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRlwRAsacdFLAIYAVALTIGCLSCFYLF 234
                    555555666666666666655555555555555555557777666334579****************9887 PP

  == domain 3  score: 32.9 bits;  conditional E-value: 6.9e-12
  ABC2_membrane  98 lakvlvelpvsllqalifllivyflvgldls.rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqwi 192
                    la ++v l++++l ++ ++ +v+++ ++++  +f+ ++l + +++ +a++++lli++++ +   +++l  +  +pl++l+G  +p+ +mpk+lq +
     EGE26753.1 216 LAIYAVALTIGCLSCFYLFGFVFWWHDYPRGgNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPL 311
                    56677889999999999999****99****9999999*********************************************************** PP

  ABC2_membrane 193 aylnPltyavealrs 207
                    a+++P t +v+++++
     EGE26753.1 312 AHALPTTQGVQMFIQ 326
                    **********99975 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   8.2e-05      0.49       8      96 ..      12     191 ..      12     202 .. 0.90
   2 ?    7.0   9.1   0.00051         3     130     276 ..     214     352 ..     208     362 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 8.2e-05
  ABC2_membrane_2   8 frdlvrsrrfllltvllpli...............dvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkv.......... 76 
                      + d++++r++ l++vl +++               d+ + ++++ +s l++    + ++t+++ +++  s +  a++  q++k+          
       EGE26753.1  12 WLDIIKDRSIFLTMVLSVVFygffypfayqaqrpaDLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKAdgilllpdnl 105
                      579*******************************************************************99999999999999999******9 PP

  ABC2_membrane_2  77 ..................................................................vstimavlipviaalfgada 96 
                                                                                        +s++ + ++p +a ++ ++ 
       EGE26753.1 106 sqsihhgqtggvglylssayflrtqnigaglvsslhatiiqelgqvtqtrhkpmpelihqsalfnpLSGYGSYIFPAVAPIIVYQT 191
                      99999999999999999999999999999999999999999999999999999999999999999977777777777776665554 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00051
  ABC2_membrane_2 130 igla.iavallatvll...alaiilalgivlaledllllvvasvlllllvvflalglllSsvarssreaaalalglfvvlailvpivlygvael 219
                       +la  aval+++ l     ++++  + + ++++++  +++ + +++   ++++++ll++s +        + l++  v +++ ++++y+++++
       EGE26753.1 214 DFLAiYAVALTIGCLScfyLFGFVFWWHDYPRGGNFWGMMLGVPIFVS--CAIGVALLIASWVA-DGAKVGVLLIFSSVPLFMLTGLAYPLMAM 304
                      566779999999977766677777888888888888888888887777..77777777777666.45555555555566667777777776666 PP

  ABC2_membrane_2 220 lagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilllllavll 276
                      +   ++   +   l + +  +++ +l++   + +d+++       +++l  +++  l
       EGE26753.1 305 PKFLQP---LAHALPTTQGVQMFIQLNQMGVSIQDVWQ------KMAYLASVAVLCL 352
                      665555...66666666667777777777777776553......3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2560.15
//
Query:       EGE26754.1  [L=392]
Description: ABC-type multidrug transport system, permease component [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-35  121.4  10.3    5.7e-35  121.0  10.3    1.0  1  ABC2_membrane_3  ABC-2 family transporter protein
  ------ inclusion threshold ------
       0.54   10.3   2.1         20    5.2   1.1    2.3  2  FixH             FixH


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0  10.3   6.3e-39   5.7e-35       5     344 ..      28     371 ..      25     372 .. 0.88

  Alignments for each domain:
  == domain 1  score: 121.0 bits;  conditional E-value: 6.3e-39
  ABC2_membrane_3   5 iitlllPiilvlllglifsnsveddentpiavvdednsslsqqlvealeaspsvelvyevdseeeakkalkngdidgilvipkgfskdllkges 98 
                       ++ + P+++++l+g +f+ +   ++++p+a+vdedns+ls  +++ +  ++++++v  +d+ ++a +a++  d+ g++ ipk+  ++l+ ge+
       EGE26754.1  28 AMVMIAPLVIIVLFGAMFYHGK--AHHLPVALVDEDNSELSHLIYQHIHHNETIKTVLILDNVQDAHHAINRLDVGGYIHIPKDAQNHLVRGEN 119
                      58899**************988..8********************************************************************* PP

  ABC2_membrane_3  99 atvtvlinssnlnsskailnalnsllqqlnasalv.......lqseatstsaninvestqleeelsnvasflvg.liliilifitasfiavsiv 184
                      + + + +n+s +++ +ai +al++ ++  +a+  +       l++ +++     +v++  l++++ +++ fl + l++++l ++ +  +a++i 
       EGE26754.1 120 TGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQtkhltgvLPHLSGNM---PHVKISVLFNPNLSYEFFLEPfLVAAVLHLLLCCLVAHAIG 210
                      ***************99999999755555544444555544433333333...36666667*************66667777777888****** PP

  ABC2_membrane_3 185 eEkesrikelqlvsgvsplqywlskilgdflvyllqlllilllafgl.gipfg.nlglllllfllfglayialgyllsslfknsetaqilifiv 276
                      +E   +  +  l+   sp+  +++ki  ++l+  l+  l+ + ++g+ g+++  +l++l++  llf+lay+ +g+++   ++n  + ++++ + 
       EGE26754.1 211 QEFHEHSVHEWLCH--SPFGALFGKISVYVLIISLWHGLWQAWLIGVrGWFVAgSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVY 302
                      *****999998877..************************99766666577773666677************************9999999999 PP

  ABC2_membrane_3 277 illlsgffgglfpledlpsalkwifsiiPffapglgllrl.itgdplweillsliilalfavvylllal 344
                        + + f g++ pl++ ps+++ ++ iiPf+ ++ + +   + g p++ +l +l  l++f++++++ +l
       EGE26754.1 303 GGSSMSFAGVTLPLNNAPSFTQFWSQIIPFTPFARLQVEQwVIGSPFIITLAHLNSLLIFVLIFGIGSL 371
                      9999999999999***********************888868***999999*************99776 PP

>> FixH  FixH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.007        63       9      54 ..      27      74 ..      24      81 .. 0.77
   2 ?    5.2   1.1    0.0023        20       8      39 ..     255     286 ..     249     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.007
        FixH  9 llflialfavvvvvnltmlyl..AvstkdglvvddyYkkGkainqela 54
                l++++++++v++v  + m+y   A +    lv++d  + +  i+q + 
  EGE26754.1 27 LAMVMIAPLVIIVLFGAMFYHgkAHHLPVALVDEDNSELSHLIYQHIH 74
                57899**************96225566678888888777777777665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0023
        FixH   8 vllflialfavvvvvnltmlylAvstkdglvv 39 
                 v ++++a  ++v++++  ++ylA+  +  +vv
  EGE26754.1 255 VRGWFVAGSLFVLIIGQLLFYLAYALFGAMVV 286
                 55568888899999**************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2885.86
//
Query:       EGE26755.1  [L=387]
Description: HlyD family secretion protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-11   42.4   3.0    4.6e-10   39.2   0.4    3.0  3  Biotin_lipoyl_2  Biotin-lipoyl like
      3e-10   39.7   7.1    3.3e-08   33.0   6.9    2.8  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    1.6e-05   25.5   0.6       0.11   13.2   0.0    2.9  3  HlyD_3           HlyD family secretion protein
     0.0011   18.7   0.0       0.46   10.2   0.0    2.3  2  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
     0.0061   16.4   0.1       0.43   10.5   0.0    2.5  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
        7.9    5.7  12.9         14    4.9  12.9    1.3  1  DUF4407          Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.4   1.5e-13   4.6e-10       1      49 [.     102     150 ..     102     151 .. 0.96
   2 ?   -2.7   0.1       1.8   5.4e+03      39      49 ..     174     185 ..     170     186 .. 0.68
   3 ?    1.8   0.0     0.072   2.2e+02       7      19 ..     268     280 ..     265     284 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.5e-13
  Biotin_lipoyl_2   1 evvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49 
                      e+v+I+ +++ rVa+++Vk+Gq V aG  L++l s++ +++++qa a l
       EGE26755.1 102 ETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLISPEIDAKKQQAAAML 150
                      78*******************************************9866 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
  Biotin_lipoyl_2  39 q.lalaqaeaql 49 
                      + ++ a+a+a+l
       EGE26755.1 174 AnWQSAKAQATL 185
                      447778888877 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.072
  Biotin_lipoyl_2   7 apvsGrVaqlnVk 19 
                      ap++G+V++++++
       EGE26755.1 268 APIDGTVSKIYIQ 280
                      89********996 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   6.9   1.1e-11   3.3e-08      16     160 ..     100     314 ..      83     330 .. 0.81
   2 ?    0.9   0.0     0.075   2.2e+02      11      45 ..     302     338 ..     297     340 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.1e-11
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............................................. CS
    HlyD_D23  16 errlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk.............................................. 68 
                 e +++++s+++ ++v  +yv+ +g++V++G+pL++l spe+ a +++  + l+                                              
  EGE26755.1 100 EGETVNISTKLPSRVAAIYVK-EGQAVRAGEPLVQLISPEIDAKKQQAAAMLQsalafqsstdrgtrqenvdtlyanwqsakaqatlaeesyrrgeyly 197
                 557899***************.********************999999999999999999999999999999999999999999988888888888888 PP

                 ................XXXXXXXX................XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 ................akkklkkke...............lleaarerLrllgvseeqia..elektgkvqktvtvkapisGvVteknvreGqyvqpgd 134
                                 +       +                 +  ++ L++    + qia  ++++    + ++ ++api+G+V +  ++  + v+p+ 
  EGE26755.1 198 qegvisrqrrdemraaK-------QssaqiahaaqqqylkAQRGRTDELKSSADAQVQIAraAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAV 289
                 88888877776655440.......03445666677775544455556666666666777622577889999**************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 135 tlftiadlstVWveaevyeqqlalvk 160
                 +++++ d     +++ + e+q + v+
  EGE26755.1 290 PVMSLLDNHP-TITISIQENQYSHVH 314
                 ***9998655.467777777777776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.075
                 XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  11 tvayderrlarvs..arveGwveklyvnatgdkVkkG 45 
                 t++++e+++++v+  ++++G++  l+ +a  + V+ +
  EGE26755.1 302 TISIQENQYSHVHalPKLTGFIPALNKTADFKIVHTD 338
                 57777888888773369******99999888777765 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00041       1.2       9      33 ..     113     137 ..      94     156 .. 0.89
   2 ?   -3.0   0.1       3.9   1.2e+04      55      83 ..     216     246 ..     200     258 .. 0.50
   3 !   13.2   0.0   3.6e-05      0.11       2      56 ..     266     318 ..     265     356 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00041
      HlyD_3   9 vvvelnveegevvqagdelleiipp 33 
                 +v+++ v+eg+ v+ag++l+++i p
  EGE26755.1 113 RVAAIYVKEGQAVRAGEPLVQLISP 137
                 789999***************9975 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.9
      HlyD_3  55 qkvtlkldqgsdy..tlkgkierisptvdak 83 
                 +++++    +++y  + +g+ +++ +++da+
  EGE26755.1 216 SSAQIAHAAQQQYlkAQRGRTDELKSSADAQ 246
                 4444444433333334455555555555444 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 3.6e-05
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqk 56 
                 l+Ap+dG+v+++ ++  e v +  ++++++ +++  +++++ + + + ++ +  k
  EGE26755.1 266 LYAPIDGTVSKIYIQSSELVMPAVPVMSLL-DNHPTITISIQENQYSHVH-ALPK 318
                 78****************************.5888999999999999886.5544 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00016      0.46      81     117 ..     112     148 ..     102     153 .. 0.83
   2 !    6.1   0.0     0.003         9      24      52 ..     251     278 ..     229     289 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00016
                 TTTEEES----SEE-SEEEEEEE-HHHHGGGSS---E CS
  PTS_EIIA_1  81 gegFellvkegdkVkagdklvevdleaikkagysttt 117
                  ++  ++vkeg+ V+ag++lv++   +i++++ + + 
  EGE26755.1 112 SRVAAIYVKEGQAVRAGEPLVQLISPEIDAKKQQAAA 148
                 5566789****************99999999877665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.003
                 T-TTSEEEEEEE-SSEEEES--EEEEE-- CS
  PTS_EIIA_1  24 ekmlGdGvaiepsegkvvapvdGkvekvf 52 
                   ++ +  a++  e  ++ap+dG+v+k++
  EGE26755.1 251 RAAVAEADALDA-ETMLYAPIDGTVSKIY 278
                 555666666666.558**********997 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00014      0.43      53      72 ..     114     133 ..     103     136 .. 0.63
   2 ?    3.3   0.0     0.024        73      41      64 ..     262     285 ..     251     294 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
                    EEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  53 vkeilvkeGdtvevgdllak 72 
                    v+ i+vkeG++v +g++l++
     EGE26755.1 114 VAAIYVKEGQAVRAGEPLVQ 133
                    55555666666666665554 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.024
                    EEEEEEBSSSEEEEEESSTTTEEE CS
  Biotin_lipoyl  41 memeieapkaGvvkeilvkeGdtv 64 
                    +e+ + ap +G+v++i++++ + v
     EGE26755.1 262 AETMLYAPIDGTVSKIYIQSSELV 285
                    5677889**********9976655 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  12.9    0.0048        14     108     241 ..     135     258 ..     125     271 .. 0.53

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0048
     DUF4407 108 IdaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakl 206
                 I  e+++++q++a+ l++ la +++++  + +++++ l a+ ++a+a+++ +++ +++               +g + +++++++ aa++  a++    
  EGE26755.1 135 ISPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESYRRGEY---------LYQEGVISRQRRDEMRAAKQSSAQIAHA- 223
                 4455566666666666666665555555555666666666666666666666666664333.........4555666666555555555555544444. PP

     DUF4407 207 datarlaalraelaeleaerakeraasqaaaaadd 241
                  +++ l+a+r + +el++ ++++++  +aa a++d
  EGE26755.1 224 AQQQYLKAQRGRTDELKSSADAQVQIARAAVAEAD 258
                 24444444444445555444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2731.69
//
Query:       EGE26756.1  [L=498]
Description: putative RND family drug transporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-35  120.2  20.1    1.6e-18   67.2   4.2    2.2  2  OEP       Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   8.0   3.2e-20   5.7e-16       2     188 .]      53     285 ..      52     285 .. 0.97
   2 !   67.2   4.2   9.2e-23   1.6e-18      16     188 .]     320     481 ..     313     481 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 3.2e-20
         OEP   2 dellalalennpdlkaaeaeieaa.eanlkaakaeflPtlslsgsygyegngsegggddggtgtt.................................. 65 
                  ++ ++ ++ +p+++a+ a ++a   ++  ++k   +P++sl++     + +s+ + d    +t                                   
  EGE26756.1  53 LDAQKQLMSSSPAIQASHALYQADvLQAESLQKLH-YPRISLNAHAFVLQQNSSIPLDHIKEQTAqhinthfdhrfgsapdglldalhdstqtaldrlp 150
                 6899999***************************9.********9999999999998877777779********************************* PP

         OEP  66 ............svgltlsqplfdggkrrarvkaakaqleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlisl 152
                             + ++t+++p+++gg ++++ ++a +q +  +  l++ +   +l++   y++++l k++ ++++++l + + ++++a ++ ++G is 
  EGE26756.1 151 dhqdvklrhdgiTPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNMLSAMQLHVDNAYKLEQQGFISR 249
                 *************************************************************************************************** PP

         OEP 153 ldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                    +q +v  +q+++ +++ ++q q++ ++L+ llg
  EGE26756.1 250 GQRMQFEVARNQVQRLYQSTQNQHQNSIYELAVLLG 285
                 77********************************98 PP

  == domain 2  score: 67.2 bits;  conditional E-value: 9.2e-23
         OEP  16 kaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqarqqlrlevaqay 114
                 ++++ +i  a +n++++++   P++++ + y  ++  +  ++         +g+ +s++lf g  r +++ aa +q++aa++ +eq+ + +++  ++ay
  EGE26756.1 320 QKLKTDILLADENIALRQSTKKPKIAAVARYTLDDKPD--WF---------AGVAVSYNLFLGIDRDKQIGAAHLQKQAAKLGHEQVNEHITTTMHTAY 407
                 56788899999999999999999999999999955553..33.........************************************************ PP

         OEP 115 lqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  +++la+++ +l+++++++a+++l++   +++ G  ++  v++aq+ l+q  +e a   + + la+a L +++g
  EGE26756.1 408 GEMVLAQKTHALLQQNHQAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHYTG 481
                 **************************************66******************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3808.00
//
Query:       EGE26757.1  [L=1390]
Description: ATP-dependent helicase HrpA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.2e-153  510.6   6.6     1e-152  509.9   6.6    1.3  1  DUF3418      Domain of unknown function (DUF3418)
    4.2e-18   65.6   0.1    9.8e-18   64.4   0.1    1.6  1  HA2          Helicase associated domain (HA2)
    6.5e-16   58.5   0.1    1.9e-15   57.0   0.1    1.9  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    4.7e-10   39.8   0.2    1.9e-09   37.9   0.0    2.1  2  Helicase_C   Helicase conserved C-terminal domain
    3.2e-06   27.0   0.2    1.7e-05   24.6   0.2    2.2  1  DEAD         DEAD/DEAH box helicase
      4e-05   23.9   0.0    0.00019   21.7   0.0    2.2  1  AAA_22       AAA domain
    0.00016   20.8   0.0    0.00035   19.7   0.0    1.5  1  T2SSE        Type II/IV secretion system protein
    0.00096   19.5   1.6       0.02   15.2   0.1    3.5  4  AAA_19       AAA domain
     0.0059   16.3   0.2      0.015   15.0   0.2    1.6  1  AAA_30       AAA domain
  ------ inclusion threshold ------
      0.013   15.0   0.1      0.037   13.5   0.1    1.8  1  PhoH         PhoH-like protein
      0.025   14.2   0.5      0.093   12.3   0.5    2.1  1  SRP54        SRP54-type protein, GTPase domain
       0.03   14.2   0.1        0.1   12.5   0.0    2.0  2  NACHT        NACHT domain
       0.13   12.9   0.0       0.35   11.4   0.0    1.7  1  DUF4786      Domain of unknown function (DUF4786)
       0.13   12.2   0.1       0.83    9.5   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
       0.18   12.3   0.6       0.87   10.1   0.0    2.5  2  ABC_tran     ABC transporter
       0.62   10.5   0.0       0.62   10.5   0.0    3.1  3  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> DUF3418  Domain of unknown function (DUF3418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  509.9   6.6  8.9e-156    1e-152       1     582 [.     786    1385 ..     786    1386 .. 0.92

  Alignments for each domain:
  == domain 1  score: 509.9 bits;  conditional E-value: 8.9e-156
     DUF3418    1 krgavvatervtLyGlpivakRrvnygkidpeeaRelFIReALVegewetkhaFfahNrklleeveeleakaRRrDilvddetlfaFYdariPadvv 97  
                  k+g+v a+ +++L+Gl+++ak  vn+++id  +aRe+FIR+ALV++++  + +F+a+N + ++++e++e+++RRrD+lvd+e+l++FYda+iP+++ 
  EGE26757.1  786 KAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDRLRRRDLLVDEESLYQFYDAKIPNHIA 882 
                  789********************************************************************************************** PP

     DUF3418   98 sarhfdkWwkkarkedpklLdltredLlreeaaevteedFPdslglgglelplsYqFePgseaDGVtvtvplalLnqvsaerfeWlVpGlleekvta 194 
                  s+++f++++ +a++++p++L++++ed+l+e  +  ++++FP+s++lgg++lplsY F+P +++DGVtv+vp+++L+qv++  + W + G++ e+v +
  EGE26757.1  883 SRKSFEEFYYDAENKTPNFLHFSDEDVLNEAVD--DSREFPESWHLGGVRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQ 977 
                  ****************************98888..599*********************************************************** PP

     DUF3418  195 liksLPKalRrnlvPapdvaaavlerleekkpaegpLleaLaralrrltgveveeddfdlekLpahlrmnfrvvdekgkvlaegrdlaaLkarlaek 291 
                  l+k+LPK++Rr++vP+pd+ ++++++l  +++++  Ll++L +al++l gv+ +++df ++k++++lr  + vvd+k++v++++rdl +L+ar+++ 
  EGE26757.1  978 LLKTLPKEIRRQIVPIPDTCQKIFHQL--DASSKMGLLDQLVAALKTL-GVQAHAQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRK- 1070
                  ***************************..5556789*********987.9*********************************************5. PP

     DUF3418  292 araavaaaakaaerkgltswdfgelpetveikrggqevkgypaLv..degdsvalrvfdteaeaaaahraGlrrLlllalkeqlkqlekqlpnkqkl 386 
                    a+v+++a   e +g+++   ++++   + + +g++++ + aL+  + +++v + +f++ ++a a+h++G+++L++ +l ++ kql+ q+   +++
  EGE26757.1 1071 --ASVQSIAI--E-QGVHHHFPNHFNFVKNKHTSGIVMQEFSALKadAAQSAVFIATFTEMNAALAEHKKGVLTLIKGHLGAKQKQLTGQI--DKAF 1160
                  ..55555544..3.355544234555555555699**********7444557*************************************99..5688 PP

     DUF3418  387 alaaaplgsveaLlddliaaaldrll..............................a....eelprdeaeFealleevraelaeeaqevvrlveeil 449 
                  +la+aplg+ e+L++ +++a+l+++l                              +     +lp de+eF+++ + + +++    qe++r+++ei+
  EGE26757.1 1161 KLAFAPLGDLEKLKNIVVHATLEACLydygpdfdhkpvsqhvdharaaiaglitqnNqwliSHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIY 1257
                  9999**********************999999999999999999998887777655156677788******************************** PP

     DUF3418  450 aaaaevekklkkaks...laaladireqleeLvypgfvaatpaerLqhlprYlkAielRleklkadparDaeklaeveeleqayaellaklpeerad 543 
                  +a+++++ kl    +    ++++di++ql++L  ++fv +t++++++++prYl+A+++Rl++l+++++ D ++   ++++++++a+ ++        
  EGE26757.1 1258 TAWQTARGKLLMLDQeifGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVK-------- 1346
                  **********55444764336*****************************************************************964........ PP

     DUF3418  544 seeleeirwlieElrVslFAqeLgTavpVSekRlekala 582 
                  +++++e+rwl+eE+r++lFAq ++T +pVS+kRle+ +a
  EGE26757.1 1347 NPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWA 1385
                  4559********************************997 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.1   8.8e-21   9.8e-18       3     100 ..     480     611 ..     478     616 .. 0.81

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 8.8e-21
         HA2   3 elLvalgALdeegn..............lTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee.......... 77 
                 +lL++lgALd++                lT++G++ma++P++prla+mL+a+ ++  +cl +++ iv+al+v+++  ++ +++++ +++          
  EGE26757.1 480 KLLIELGALDDKSFtktrakkgrtqlssLTKIGQQMAKMPIDPRLARMLVAGDTF--DCLADILIIVSALAVQDVRERPINKHAQADQKhalfrkedsd 576
                 79*******5542245666666677777************************555..******************999998888877778889988887 PP

         HA2  78 ............eeekakkkrkeeekarrklahkd 100
                             +++  +++++  ++arr++a+k 
  EGE26757.1 577 flfylelfaalfDQHSTNDNQALSSNARRNFAKKH 611
                 77777666544438888888888899899998876 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.1   1.7e-18   1.9e-15       1      82 [.     696     772 ..     696     773 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.7e-18
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTT CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagq 82 
                  ++++ll++l++ +a+k+++  +y  ar ++++ i+p+S+l k    k  +wv+  e vet+ +y+r+l++i+p+w+++ a++
   EGE26757.1 696 IHRALLSALLSFVAHKTDTVGEYLMAR-SQKARIFPASTLHK----KGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPN 772
                  799***************9999****9.*************9....********************************9997 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.7e-12   1.9e-09      15     110 ..     301     416 ..     285     417 .. 0.83
   2 ?   -3.1   0.0         9     1e+04      13      56 ..    1110    1151 ..    1102    1156 .. 0.73

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.7e-12
                 TTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS....SSH......... CS
  Helicase_C  15 eggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp....rnv......... 97 
                 ++ +ilif+ t  ++ +  ++l      + ++++l ++ +  e+++i++   kg+ +++iat+vae+ +++p++++Vi++++     +n+         
  EGE26757.1 301 DQADILIFAATEAEIRElQEVLMLYApaHTEILPLFARQSYGEQQKIFAPSGKGR-RIIIATNVAETALTVPNIRYVIDLGFArisrYNYrsriqrlpi 398
                 67899********8865533332222569********************995554.7**************************6655333888899999 PP

                 .....HHHHHHHTTSSST CS
  Helicase_C  98 .....tsyiqriGRtgRa 110
                      + ++qr+GR+gR+
  EGE26757.1 399 eaisqAAANQRKGRCGRV 416
                 99999************7 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9
                  TTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHH CS
  Helicase_C   13 eeeggkilifvntidrlekvklllekkgikvavlhgelpqnere 56  
                  +++  ++ +f+ t ++++    l e+k+   + + g l +++++
  EGE26757.1 1110 KADAAQSAVFIATFTEMN--AALAEHKKGVLTLIKGHLGAKQKQ 1151
                  567778889999999886..666666666677888888877765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   1.5e-08   1.7e-05       6     171 ..      77     227 ..      72     231 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.5e-08
                 HHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTCSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   6 eaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngvdivvg 103
                   i++i + + v++a+eTGsGKT+   +p l+ ++   +  + ++    P r  a+ ++ ++ + + + ++ +v+  i  +++  +      +  + ++
  EGE26757.1  77 TLIQAIRDHQVVIIAGETGSGKTTQ--LPKLAMMAG--RGITGQIGHTQPRRLAARSVAMRIAEELGEpLGQTVSFKIRFTEEGGK------HSIVKLM 165
                 56888999999************86..888877754..56666999************9998655553277555544443333222......2445679 PP

                 EHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS.H CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.x RF
        DEAD 104 tpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp.k 171
                 t g l+  l s++   l +  ++++DEa++ + +   dfi   l++l     + + l+  vi+ SATl  +
  EGE26757.1 166 TDGILLAELgSDKF--LANYDTIIIDEAHERSLN--IDFIMGYLKRL---LPKRPdLK--VIITSATLDtQ 227
                 99999997757777..*************99887..78888878787...44444344..********844 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.7e-07   0.00019       4     126 ..      84     218 ..      81     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.7e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.........erlsseellealeqalrarav.. 91 
                 +++++++ Ge+G+GKTt l +l++ + +         +++  t p     ++++ +++++lg++l           e++ ++ +++++++ +  +    
  EGE26757.1  84 DHQVVIIAGETGSGKTTQLPKLAMMAGRG------ITGQIGHTQPRRLAARSVAMRIAEELGEPLGQtvsfkirftEEGGKHSIVKLMTDGILLAELgs 176
                 67899********************9543......34444333333337***************************88888888888888888777778 PP

      AAA_22  92 ......ielliiDEaqhlrs...eealeeLrsllnlsrkgvqli 126
                          +iiDEa+   s   + ++ +L++ll  +r ++++i
  EGE26757.1 177 dkflanYDTIIIDEAHER-SlniDFIMGYLKRLLP-KRPDLKVI 218
                 88999999********96.4447888888866654.35555555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.2e-07   0.00035     116     146 ..      72     102 ..      20     110 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.2e-07
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttll 146
                  + a++l +a+r +++++++G TgsGKtt l
  EGE26757.1  72 TAEADTLIQAIRDHQVVIIAGETGSGKTTQL 102
                 44567899999******************98 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.8e-05      0.02       8     113 ..      83     193 ..      76     218 .. 0.62
   2 ?    0.3   0.0      0.74   8.3e+02      31      71 ..     291     330 ..     283     373 .. 0.85
   3 ?   -0.9   0.0       1.6   1.8e+03      68     112 ..     725     868 ..     689     882 .. 0.68
   4 ?   -2.7   0.0         6   6.7e+03     116     143 ..     973    1001 ..     971    1002 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivall.....velggvkpeeillvaftgrAakelrerlaalgae.........atTiHrlalldfddlltealelle 92 
                   ++v+++ +  G+GKT+ l +   ++      ++g+ +p+++++ +++ r a+el e l   g+              H++            ++l+ 
  EGE26757.1  83 RDHQVVIIAGETGSGKTTQLPKLAMMAgrgitGQIGHTQPRRLAARSVAMRIAEELGEPL---GQTvsfkirfteEGGKHSI------------VKLMT 166
                 567788888889******998776654111115677777888888888888888888877...3332234434332233333............22222 PP

      AAA_19  93 ......eaeeekklqeeellivDEfqd 113
                       e  ++k+l + +++i+DE+ +
  EGE26757.1 167 dgillaELGSDKFLANYDTIIIDEAHE 193
                 333333667789996666******976 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.74
      AAA_19  31 vallvelggvkpeeillvaftgrAakelrerlaalgaeatT 71 
                  + +   g+ + ++il+ a t+   +el+e l +l a+a+T
  EGE26757.1 291 FEDARTKGHPDQADILIFAATEAEIRELQEVL-MLYAPAHT 330
                 555555666667899***************99.99999988 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.6
      AAA_19  68 e.....atTiHrlal.................................................................................... 77 
                 +     a+T+H+ +                                                                                     
  EGE26757.1 725 KarifpASTLHKKGAqwvmafevvetsqvymrtlakiepewiikaapnllkyhyfephwskkagrvrayaqislfgliviakelvnfeqidlvqareif 823
                 144444888888777788888888888888888888888888888888888888888888888888888887778877777777777777777777777 PP

      AAA_19  78 .............ldfddlltealelle.eaeeekklqeeellivDEfq 112
                              +  + l ++a ++ +  ++ e+ l ++  l+vDE +
  EGE26757.1 824 irdalvanqygmqM--KFLADNANKI-KdIERIEDRL-RRRDLLVDEES 868
                 77777666666332..2222222222.2212334455.66667788865 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 6
      AAA_19  116 elqyrLlkallgek.kklllvGDpdQliy 143 
                  el  +Llk+l++e   +++ + D  Q i+
  EGE26757.1  973 ELVLQLLKTLPKEIrRQIVPIPDTCQKIF 1001
                  67789******998888999999999885 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   1.3e-05     0.015      13      97 ..      81     191 ..      72     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaa.g........grviglAptgkaAkvLaeelgieastiakllkrlk..................gra 84 
                 ++ ++ +v+++ G  G+GKtt l +l+ ++ +           +r+++ +   + A++L+e lg + s   +++++ +                  +  
  EGE26757.1  81 AIRDH-QVVIIAGETGSGKTTQLPKLAMMAGRGiTgqightqpRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGkhsivklmtdgillaelgS-D 177
                 44444.5******************998888765357778877777777778888888887666544444444433335666666666677777744.4 PP

      AAA_30  85 rlepg.tllivDEa 97 
                 ++ ++ + +i+DEa
  EGE26757.1 178 KFLANyDTIIIDEA 191
                 4444449999**98 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   3.3e-05     0.037       5      34 ..      71     100 ..      69     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
                 -SHHHHHHHHHHHH-SEEEEE--TTSSTTH CS
        PhoH   5 ktkeQkeylealkkndivfaiGpaGtGKty 34 
                  t+e +++++a++++++v+++G++G+GKt 
  EGE26757.1  71 VTAEADTLIQAIRDHQVVIIAGETGSGKTT 100
                 57778899********************96 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   8.3e-05     0.093       2      25 ..      86     109 ..      85     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-05
                 EEEEEEESTTSSHHHHHHHHHHHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaall 25 
                 +v++++G +G+GKTt l KLa + 
  EGE26757.1  86 QVVIIAGETGSGKTTQLPKLAMMA 109
                 6899*****************765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.1e-05       0.1       2      27 ..      87     112 ..      86     232 .. 0.89
   2 ?   -3.0   0.0       5.5   6.1e+03      88     137 ..     270     317 ..     270     335 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.1e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaeg 27 
                 +vi+ Ge GsGKTt l kla+ + +g
  EGE26757.1  87 VVIIAGETGSGKTTQLPKLAMMAGRG 112
                 89******************988776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.5
                 E-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCT CS
       NACHT  88 DglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdlee 137
                 D++D++++ l+ +  ++v++ +++  +k ++ +a +l+ + ++a   ++e
  EGE26757.1 270 DAFDDIEDNLPRALTAAVNECFEDARTKGHPDQADILIFAATEAE--IRE 317
                 899999999999888999999999999999999999988777776..333 PP

>> DUF4786  Domain of unknown function (DUF4786)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00031      0.35     138     159 ..     225     246 ..     189     258 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00031
     DUF4786 138 kvqslkkyFvfNGkPkglYvlk 159
                   q + +yF+ NGkP  +Y+++
  EGE26757.1 225 DTQRFSDYFAANGKPAPVYIVE 246
                 6799****************94 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00074      0.83      87     120 ..      72     106 ..      38     123 .. 0.76
   2 ?   -1.6   0.1         2   2.3e+03      50      99 ..     808     859 ..     804     864 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00074
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinall 120
                  ++++++l ++++d ++++++G++G GK+t + +l+
   EGE26757.1  72 TAEADTLIQAIRDhQVVIIAGETGSGKTTQLPKLA 106
                  4678899999999899*************988876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2
                  EEEEE-GGG--HHH..HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  50 vivlnKiDlleeee..eleelkeelealgyevllvsaktkegleelkellkd 99 
                  ++ +  iDl++ +e    ++l ++   +++++l+ +a++ +++e+++++l+ 
   EGE26757.1 808 LVNFEQIDLVQAREifIRDALVANQYGMQMKFLADNANKIKDIERIEDRLRR 859
                  5678889999999954334444444555566667777777889999888876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00078      0.87       8      34 ..      82     108 ..      76     140 .. 0.78
   2 ?   -3.0   0.1       8.8   9.8e+03      70      94 ..     587     637 ..     554     671 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00078
                 EETTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagl 34 
                 ++  ++v i Ge+G+GK+t l  la +
  EGE26757.1  82 IRDHQVVIIAGETGSGKTTQLPKLAMM 108
                 667899*************88666554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.8
                 S-TTSBHHHH..........................HHHTCHHHHHHHSTT CS
                 xxxxxxxxxx..........................xxxxxxxxxxxxxxx RF
    ABC_tran  70 lfpeltvren..........................esdeeiekalsklgl 94 
                 lf++++  +n                          +  ++++++++++g 
  EGE26757.1 587 LFDQHSTNDNqalssnarrnfakkhylsyarirewqKTHRQLSEMMAEMGF 637
                 444444444444444444445555555555444445445555555555554 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00055      0.62      18      34 ..      84     100 ..      74     201 .. 0.87
   2 ?   -1.3   1.8       2.4   2.6e+03      69     130 ..     641     694 ..     582     867 .. 0.65
   3 ?   -1.0   0.2       1.9   2.1e+03     130     189 ..    1229    1290 ..    1199    1322 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00055
      AAA_23  18 skgltlItGpNGaGKTT 34 
                 ++ +++I G++G+GKTT
  EGE26757.1  84 DHQVVIIAGETGSGKTT 100
                 67899************ PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.4
      AAA_23  69 gkvkayveltfenkdgrytrsiererelskkkgkttkka.klelleideleqfisellgskki 130
                 ++++ + ++++ +k+g     +     ls k+g + +k+ k  l++ ++l++ i+++ ++ ++
  EGE26757.1 641 KQKNHQNDVKIDTKKG-----V----RLSLKSGTSHQKSiKQALVGAKALKNDIDNKTSIHYA 694
                 3333333333333333.....2....1222222222222122334445555555554444444 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.9
      AAA_23  130 i........ilnlilflgqerfeefelkdkkerleelekeleeledekkllekl...eqekekekeleele 189 
                  +        il+++l+ gqe             l+e+ ++ +++  +   l+++   e++++ e++l++l+
  EGE26757.1 1229 RefddcqdlILKNFLLVGQEIL---------RNLKEIYTAWQTARGKLLMLDQEifgENIEDIEDQLDDLQ 1290
                  3344444456677777777775.........5666666666666666666666655555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.41
# Mc/sec: 10210.01
//
Query:       EGE26758.1  [L=229]
Description: MotA/TolQ/ExbB proton channel [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-37  127.3   0.2    4.6e-37  126.6   0.2    1.3  1  MotA_ExbB    MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
       0.13   12.7   6.9       0.14   12.6   0.2    2.5  2  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.2   5.1e-41   4.6e-37      18     123 ..      91     203 ..      73     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 5.1e-41
                 T.......-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSGGCTHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  18 l.......vdgaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsadlakvapgiaeALiaTalGlvvAipavl 109
                 +       +d+++ + ++r l+ al  e+ +lekgls+latigs++P++GL+GTV+G+++af  l++a+s  la+vap+iaeALiaTalGl++Aipa++
  EGE26758.1  91 HqdqdsslSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATM 189
                 234455558999*********************************************************99**************************** PP

                 HHHHHHHHHHHHHH CS
   MotA_ExbB 110 aynklkrkverlvl 123
                 ayn + +k++ l +
  EGE26758.1 190 AYNHFATKSNTLYE 203
                 *********99876 PP

>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.6e-05      0.14      17      72 ..      19      82 ..       5      87 .. 0.79
   2 ?    2.8   1.1     0.018   1.6e+02      13      36 ..     141     164 ..     127     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
  SNARE_assoc 17 llgtlvtslgallGaslayllgrylgr....kalrrkllsekrvka....lerlverygflall 72
                  l++ +++l ++++ +l ++lg ++g     ++  ++++  + ++     +++ +er g  +++
   EGE26758.1 19 KLVMAILLLLSTISWVLIFHLGTKIGGiakfDKRFERWFWTDDIDHqlsvVQAESERAGLELIF 82
                 34899999*********************99555556888888888888888888888877666 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.018
  SNARE_assoc  13 lfglllgtlvtslgallGaslayl 36 
                  lfg+++g++ +++g   ++s++ +
   EGE26758.1 141 LFGTVWGIMNAFIGLGQAESVGLA 164
                  679***********9988888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1948.14
//
Query:       EGE26759.1  [L=144]
Description: biopolymer transport protein ExbD/TolR [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-23   83.9   4.5    1.3e-23   83.6   4.5    1.0  1  ExbD      Biopolymer transport protein ExbD/TolR


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   4.5   7.3e-28   1.3e-23       4     127 ..      14     140 ..      11     142 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 7.3e-28
        ExbD   4 esaeinltpmiDvvflLLifFlvtaklkkpeplevdlPsssstqkeveekelirisisadgsiyldkka...v..sveelaqklkerkakppdkltvai 97 
                  ++++n++p+iDv+++LL++F+vta++ +   +ev+lP+ +++  ++++k ++++si+adg++y+++k+   v  + ++l   l+++ ++++d   v++
  EGE26759.1  14 LNSDMNVVPYIDVMLVLLVIFIVTAPMLATG-IEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNaidVpiTPDKLDTLLRQMHQDNTDL-QVMV 110
                 6789***************************.************99********************999755266999***********99998.**** PP

        ExbD  98 kadkdvsygklvevldtlkkagiekvslvt 127
                 +ad+d  y  ++++++ ++  gi++vsl+ 
  EGE26759.1 111 NADADNAYSRIMQIMALIQNVGITQVSLLS 140
                 ***************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1241.43
//
Query:       EGE26760.1  [L=264]
Description: hypothetical protein EA1_04722 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-05   22.7   0.3    9.3e-05   22.2   0.3    1.1  1  SHE3         SWI5-dependent HO expression protein 3
    0.00077   19.7   0.0     0.0024   18.1   0.0    1.8  2  TonB_2       TonB C terminal
  ------ inclusion threshold ------
      0.022   15.1   0.1      0.022   15.1   0.1    1.6  2  Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C te
      0.057   12.6   0.3      0.091   12.0   0.3    1.2  1  RE_HindIII   HindIII restriction endonuclease


Domain annotation for each model (and alignments):
>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   2.1e-08   9.3e-05      93     227 ..      64     201 ..      56     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-08
                 HHHHHHCCCHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHSSSXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3  93 kkrlenssaset..eleeelerlkvqYdalvdsqkeYkehYqqeieeLkesleklkl.enekqleelqerissndkdidtkldsynnkkknlesieeek 188
                 k+ l n +a+++  + ++  + + ++ +a +++q++ +  Y+ ++++  +  ++++   n+  +e +  +i+++ ++  +kl +y+n + +le++++++
  EGE26760.1  64 KTALSNHHANQNkpTATNTSSTITANDNAFMQAQNQHR--YHPQVSTSATTTQAYHPpPNSAPFESNSPNIQNQPTNAHAKLAEYSNHVSDLEQSSHTE 160
                 4445555444441156778899************9875..889999*9******996268889************************************ PP

                 XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 189 nkkllkkleslaseld..leswlelykelkelileyaekie 227
                  +    +++ +++ ++  +e   ++y+++ +  ++++  ++
  EGE26760.1 161 STPSRAQINAAITSVKhrIEAIWQRYPKQPNQTITFQVNMN 201
                 **99999*9999999999****************9987775 PP

>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.3     1e+04      48      61 ..      83      96 ..      78     110 .. 0.74
   2 !   18.1   0.0   5.4e-07    0.0024       6      76 ..     173     239 ..     172     247 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.3
      TonB_2 48 sSgneafDkavkrA 61
                sS  +a D+a ++A
  EGE26760.1 83 SSTITANDNAFMQA 96
                77778888888877 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 5.4e-07
      TonB_2   6 akvrarikenwafpsqisgnleavveitidpdGeivsvrlvksSgneafDkavkrAiekasplPpppekgg 76 
                 ++v++ri+  w+  ++ + n++ ++++ ++++G +  ++++   g++++ ++v+ A+++a p+ ++  +++
  EGE26760.1 173 TSVKHRIEAIWQRYPK-QPNQTITFQVNMNQQGDV--TSIQFGGGHPDLRESVEAAVYAAAPFYELG-GMR 239
                 57999******55566.89***************9..5555578****************9996552.333 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3       1.1   4.7e+03      43      59 ..      75      91 ..      57     112 .. 0.45
   2 ?   15.1   0.1   4.9e-06     0.022       7      70 ..     126     188 ..     121     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
  Uso1_p115_C 43 aesqakeleaenkklek 59
                 ++  a+++++++ +  +
   EGE26760.1 75 NKPTATNTSSTITANDN 91
                 22222222222222222 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 4.9e-06
  Uso1_p115_C   7 eseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelke 70 
                  es+  +++++ +++ a+l + s+ + +leq+ ++ +++    +++a + +++ ++e++ +++ +
   EGE26760.1 126 ESNSPNIQNQPTNAHAKLAEYSNHVSDLEQS-SHTESTPSRAQINAAITSVKHRIEAIWQRYPK 188
                  7888899************************.*************************9888765 PP

>> RE_HindIII  HindIII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3     2e-05     0.091     177     243 ..     133     199 ..     129     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2e-05
  RE_HindIII 177 kespteaerlLkeyakivaaldpaklkeakaYWskinqtilklaettkellreeklaasellkeakq 243
                 +++pt+a+  L ey++ v  l+ +   e+    ++in  i  ++++++  ++ + ++ ++++  +++
  EGE26760.1 133 QNQPTNAHAKLAEYSNHVSDLEQSSHTESTPSRAQINAAITSVKHRIEAIWQRYPKQPNQTITFQVN 199
                 5789999999***************99*********************************9976654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1640  (0.0914719); expected 358.6 (0.02)
Passed bias filter:                      716  (0.0399353); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 1966.08
//
Query:       EGE26761.1  [L=420]
Description: tolB-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-23   81.5   9.9    1.2e-07   31.5   0.3    5.5  6  PD40             WD40-like Beta Propeller Repeat
     0.0011   19.1   0.1      0.024   14.8   0.1    2.4  1  TolB_N           TolB amino-terminal domain
     0.0059   15.3   0.0       0.03   13.0   0.0    2.2  3  Pectate_lyase22  Oligogalacturonate lyase
  ------ inclusion threshold ------
      0.033   13.5   0.1       0.08   12.2   0.0    1.7  2  Lactonase        Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.7e-07     0.003       9      28 ..     197     216 ..     194     226 .. 0.82
   2 !   31.5   0.3   2.7e-11   1.2e-07       2      38 .]     235     271 ..     234     271 .. 0.95
   3 ?   -2.2   0.0         1   4.5e+03       4      30 ..     282     308 ..     281     316 .. 0.60
   4 !   17.4   0.0   7.2e-07    0.0032      10      29 ..     330     349 ..     322     360 .. 0.85
   5 !   17.4   0.0   6.8e-07    0.0031      12      35 ..     371     393 ..     367     396 .. 0.82
   6 ?   -2.1   0.1       0.9   4.1e+03       5      18 ..     407     420 .]     407     420 .] 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.7e-07
                 S.EEEEEE-TTSSEEEEEEE CS
        PD40   9 gnegaPsfSPDGkrlaFsSd 28 
                 g ++ P+fSPDG ++a+s +
  EGE26761.1 197 GSIITPTFSPDGLSIAYSVQ 216
                 67899************965 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 2.7e-11
                 EE--SSSS.EEEEEE-TTSSEEEEEEECT.TCEEEEE CS
        PD40   2 krltntpgnegaPsfSPDGkrlaFsSdRgsGkpdIyv 38 
                 k +t++ g++ aPsfSPDG+++ Fs + +  +p+Iy+
  EGE26761.1 235 KLVTPFWGHNLAPSFSPDGSSILFSGSHENNNPNIYR 271
                 789************************99*******7 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1
                 --SSSS.EEEEEE-TTSSEEEEEEECT CS
        PD40   4 ltntpgnegaPsfSPDGkrlaFsSdRg 30 
                 lt+++g e aP +  D + ++++ d+g
  EGE26761.1 282 LTTFNGAENAPNYLADASGFIYTADKG 308
                 577777777776665555566666666 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 7.2e-07
                 .EEEEEE-TTSSEEEEEEEC CS
        PD40  10 negaPsfSPDGkrlaFsSdR 29 
                 + ++P++SPDG++l++ S +
  EGE26761.1 330 YATNPRLSPDGSKLVYLSGG 349
                 789*************9965 PP

  == domain 5  score: 17.4 bits;  conditional E-value: 6.8e-07
                 EEEEE-TTSSEEEEEEECT.TCEE CS
        PD40  12 gaPsfSPDGkrlaFsSdRgsGkpd 35 
                  + sfSP G+r++++S++g  k +
  EGE26761.1 371 VSASFSPSGTRIIYTSNQG-NKNQ 393
                 5789*************98.6666 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 0.9
                 -SSSS.EEEEEE-T CS
        PD40   5 tntpgnegaPsfSP 18 
                 ++t+g   +P +S+
  EGE26761.1 407 IPTSGTVRDPIWSK 420
                 578888899***96 PP

>> TolB_N  TolB amino-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   5.4e-06     0.024      41     103 ..      58     120 ..      29     122 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.4e-06
                 HHHTTSEEE--GGG-S---SS..GGG--HHHHHTTT-SEEEEEEEE-TTSE.EEEEEEEEE-SSS CS
      TolB_N  41 LerSGlFrpldksafpqkpss..eaevdfadWkalgadalvtGsvtesgdgrlkvefrLwDvvkg 103
                 L+  Gl      +++pq++++  +   ++++W++ g ++++  +  +  +++l ++++++D+++g
  EGE26761.1  58 LSLAGL--GTTHQNLPQHTQTnsDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANG 120
                 555555..334556666666633666799*****************655567**********986 PP

>> Pectate_lyase22  Oligogalacturonate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       0.7   3.1e+03     194     231 ..     140     176 ..     127     179 .. 0.79
   2 !   13.0   0.0   6.6e-06      0.03      26     117 ..     232     327 ..     201     335 .. 0.76
   3 ?   -1.6   0.0      0.19   8.4e+02     353     380 ..     370     397 ..     354     402 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.7
  Pectate_lyase22 194 iyrpfddstvafchegphdlvdarmwlinedgsnlrkv 231
                       yr   d+   +    p dl+  ++ +++e gs   k+
       EGE26761.1 140 AYRQISDTIYQIITGQPSDLMG-KIAYVEESGSPQNKI 176
                      5888888888888888999875.678889999988887 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 6.6e-06
  Pectate_lyase22  26 ltppdvichrnyfyqkcftrdgskllfggafdg.prnyylldlntqqavqltegkgdntfggflssdddalfyvkne....rnlmrvdletlee 114
                       tp  v+    +     f+ dgs +lf+g+ +  + n y l+l+t++   lt  +g +    +l+     + y  ++    + l r d+ t   
       EGE26761.1 232 GTPKLVTPFWGHNLAPSFSPDGSSILFSGSHENnNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADAS-GFIYTADKgtrrQSLYRYDFGTTHS 324
                      56666666666677778************99861569*******************999999997554.4555443212224677777777776 PP

  Pectate_lyase22 115 tvi 117
                      t i
       EGE26761.1 325 TQI 327
                      665 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.19
  Pectate_lyase22 353 hphpsftpddkqvlftsdvegkpalyla 380
                          sf+p   ++++ts+   k  l + 
       EGE26761.1 370 DVSASFSPSGTRIIYTSNQGNKNQLMIR 397
                      4567999*********998888877765 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.97   4.4e+03     298     319 ..     204     225 ..     162     240 .. 0.58
   2 ?   12.2   0.0   1.8e-05      0.08       8      83 ..     262     332 ..     255     370 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.97
                 E-TTSSEEEEEETTTTEEEEEE CS
   Lactonase 298 ldpsgklllvanqksdnvtvfe 319
                 ++p+g  ++ + q+ +n+ ++ 
  EGE26761.1 204 FSPDGLSIAYSVQTKNNLPIIY 225
                 3444444444444444444444 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1.8e-05
                 GSSS.TEEEEEEEETTTS-EEEEEE.EEESS---SEEE-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE. CS
   Lactonase   8 tkgeskgiytlkldtetgkltplel.vaelenPsyLalspdgktlYavnetgeeggvsafaidkdsgeltllnkvss 83 
                  +++   iy+l+l  +t +l+ l++   + + P+yLa   ++ ++Y++++  ++ +++ ++++++  + t++++  +
  EGE26761.1 262 HENNNPNIYRLNL--HTNHLDTLTTfNGAENAPNYLAD--ASGFIYTADKGTRRQSLYRYDFGTT--HSTQIASYAT 332
                 4467889******..9999*999996778889*****9..9*********99**********975..5555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2985.96
//
Query:       EGE26762.1  [L=70]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 550.00
//
Query:       EGE26763.1  [L=1184]
Description: transcription-repair coupling factor [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-28   97.9   0.0      1e-27   96.3   0.0    1.8  1  TRCF            TRCF domain
    6.7e-21   74.8   0.0    1.8e-20   73.4   0.0    1.8  1  CarD_CdnL_TRCF  CarD-like/TRCF domain
    4.9e-19   68.7   0.3    4.7e-17   62.3   0.2    2.8  2  Helicase_C      Helicase conserved C-terminal domain
    9.4e-18   64.2   0.2    1.3e-16   60.5   0.0    2.7  2  UvrB_inter      UvrB interaction domain
    2.6e-17   63.1   0.1    5.2e-17   62.2   0.1    1.5  1  DEAD            DEAD/DEAH box helicase
    1.3e-10   41.5   0.1    3.4e-10   40.2   0.1    1.7  1  ResIII          Type III restriction enzyme, res subunit
    0.00029   20.1   0.0    0.00073   18.8   0.0    1.6  1  ERCC3_RAD25_C   ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
      0.047   13.7   0.0       0.46   10.6   0.0    2.4  2  UB2H            Bifunctional transglycosylase second domain


Domain annotation for each model (and alignments):
>> TRCF  TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   4.5e-31     1e-27       2      91 ..    1043    1132 ..    1042    1135 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 4.5e-31
        TRCF    2 dvdalipeeYipdeserlelYkriasieteeeldeleeeLiDrFGklpeevenLlevarlkllakklgiekikekkkkleitfsekakid 91  
                  + +alip+eY  d++erl +Ykri+s+++ ++l +++ e+iDrFG lp +++nL++v+r++++ak+lgi+ki++++++++i+f+++++id
  EGE26763.1 1043 HASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPID 1132
                  679**********************************************************************************99887 PP

>> CarD_CdnL_TRCF  CarD-like/TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   8.1e-24   1.8e-20       1      94 [.     513     606 ..     513     608 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 8.1e-24
  CarD_CdnL_TRCF   1 lkvGDyVvhedhGiGriegiekrevegaekeylvleyadkkgdklyvPvdqldlirkyiske..epkldklggkrwektkekakkgvkeeaaelv 93 
                     l++G +Vvh +hGiGr++g++  +v + e+e+++l+yad  ++ +yvP+++l li +y++++  +++l+k+g+ +wek+k ka +++++ aael+
      EGE26763.1 513 LTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYAD--DASIYVPITNLALIGRYSGSDlqTVSLSKIGSGKWEKAKLKALEQIHDVAAELL 605
                     57899**********************************..89********************999****************************8 PP

  CarD_CdnL_TRCF  94 k 94 
                     +
      EGE26763.1 606 N 606
                     6 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.052   1.2e+02      13      74 ..     682     747 ..     672     763 .. 0.82
   2 !   62.3   0.2   2.1e-20   4.7e-17       5     110 ..     838     942 ..     830     943 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.052
                 TTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C  13 eeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatd 74 
                  + g+++ + v+t+  + +  + +l+++    ik+  l    +++++++il+   +g++d++i t 
  EGE26763.1 682 VQAGYQVAVLVPTTLLAGQhEDSFLNRFadwPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTH 747
                 567788888888888554456777788887778888888888********************9985 PP

  == domain 2  score: 62.3 bits;  conditional E-value: 2.1e-20
                 HHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSHHHH CS
  Helicase_C   5 allellkleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.rnvtsy 100
                 +l     +  +gg+++   n + ++e  ++ l+e   + +vav hg+++ +e   ++++f +++++vL+a++++e+Gid+p++n++i+  ++ ++++++
  EGE26763.1 838 IL----REILRGGQVYYLHNDVASIEAaADTLRELVgEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADkFGIAQL 932
                 33....44469************998877777444478******************************************************888**** PP

                 HHHHTTSSST CS
  Helicase_C 101 iqriGRtgRa 110
                 +q +GR+gR 
  EGE26763.1 933 HQLRGRVGRS 942
                 *********5 PP

>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0     6e-20   1.3e-16       2      80 ..     128     205 ..     127     243 .. 0.86
   2 ?    0.4   0.0      0.35   7.8e+02      35      73 ..    1102    1141 ..    1091    1153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 6e-20
  UvrB_inter   2 elkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpasaeevairieffgdeiesireidpltgkslekl 80 
                 +l vg+k+d +e   +L++++Y +++ ++++G+F+vrG++v+if++  ++ ++r+++f+d+ie+i+ +dp ++++l++ 
  EGE26763.1 128 DLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVG-QSLPFRLDLFDDNIETIKFFDPDSQRTLSDN 205
                 699********************************************.6*************************96553 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.35
  UvrB_inter   35 FrvrGdtveifpasaeevairieffgde.iesireidplt 73  
                   r+r +++ i   +a ++ i ief  d+ i+ + +i+ ++
  EGE26763.1 1102 IRIRAKALGITKIDATQTTISIEFRADTpIDGLAIIKLIQ 1141
                  689999999*****9999******9874488888777665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.1   2.3e-20   5.2e-17       3     171 ..     640     797 ..     638     802 .. 0.82

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 2.3e-20
                 HHHHHHHHHH......TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT..STSEEEEEETTSSH.HHHHH CS
                 xxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxx RF
        DEAD   3 iQaeaiplil......gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky..idlrvlliiggvaa.rdqls 92 
                  Qaeai++++      +  d l+++++G GKT++++ +++ +v     + g ++ +++Pt+ La q+ + + +++    i+++ l+ +g+++  +  l+
  EGE26763.1 640 DQAEAIHAVMhdmkqnKPMDRLICGDVGFGKTEVAMRAAFIAV-----QAGYQVAVLVPTTLLAGQHEDSFLNRFADwpIKIESLSRFGNKKHqDAILA 733
                 699*****99666543337999******************777.....89*********************8888853588888888886665144566 PP

                 HHHTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.H CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        DEAD  93 kldng.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.k 171
                  l  g vdiv+gt++ ++d ++     ++q+ ++++DE +r+     ++ i+++ ++++            + ++AT+  +
  EGE26763.1 734 GLADGtVDIVIGTHKLIQDDVK-----FKQLGLMIIDEEHRFGVR-HKERIKALQTNID-----------SLSMTATPIpR 797
                 665556************9664.....*****************9.9999999888883...........67788887645 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.1   1.5e-13   3.4e-10       7     169 ..     640     794 ..     634     796 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.5e-13
                 HHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..........GEEEESSS-B--... CS
      ResIII   7 yQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke......igkkvsgdkkkakek 99 
                  Q+eai +++  +k+++    li    G GKT va++++    ++g+  ++ +lvp++ l  q ++ f + + +   +       g+k+++d       
  EGE26763.1 640 DQAEAIHAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVQAGY--QVAVLVPTTLLAGQHEDSFLNRFADWPIKieslsrFGNKKHQDAIL-AGL 735
                 69************99999**************************99..9******************877766544333333233333333333.467 PP

                 ....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS- CS
      ResIII 100 dstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfkeavllglTATp 169
                 ++ + +i++ t + ++ d           + ++  ++iiDE Hr+g   + ++i+    +   l +TATp
  EGE26763.1 736 ADGTVDIVIGTHKLIQDDV----------KFKQLGLMIIDEEHRFGV-RHKERIKALQTNIDSLSMTATP 794
                 7777888877777777777..........677778************.777777666667779******9 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.3e-07   0.00073      78     154 ..     870     945 ..     854     972 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.3e-07
  ERCC3_RAD25_C  78 kklkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLrakkk 154
                     + + +  +G+++e+e + ++++f ++ k+n+++ s + +t iD+P+an +i   ++     q  q  Gr+ r+ ++
     EGE26763.1 870 GEARVAVAHGQMNERELSVVMNDFYHK-KFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQ 945
                    555667789***************886.8*******************99987777777777888888888887665 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0002      0.46       3      43 ..     131     171 ..     129     174 .. 0.87
   2 ?   -0.3   0.0      0.51   1.1e+03      25      60 ..     611     646 ..     599     654 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
        UB2H   3 pGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriell 43 
                  G++ +  + +  L+++gY +++nv +pGe+av+g+ ++++
  EGE26763.1 131 VGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIF 171
                 6777777778889**********************999886 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.51
        UB2H  25 snvtrpGeyavsgnriellrRgFdfpdgaeparrvr 60 
                 +n+++  ++ ++ +++el+  +F+f +  ++a  + 
  EGE26763.1 611 RNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIH 646
                 4444444899999************99988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 7853.13
//
Query:       EGE26764.1  [L=220]
Description: thiamine monophosphate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-34  118.5   0.1    2.4e-34  118.2   0.1    1.1  1  TMP-TENI  Thiamine monophosphate synthase


Domain annotation for each model (and alignments):
>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.1   1.3e-38   2.4e-34       1     179 [.      12     196 ..      12     198 .. 0.93

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 1.3e-38
    TMP-TENI   1 lylvtdskldkneellevveealkgg.vtlvqlRek....eldarellelaeklaalcrkygvpliindrvdlalavgadgvHlgqddlpvaearellg 94 
                 lyl t++ +   ++ll+ +e++++ g v+l+q+R k      d ++++++ae +  l+++y+++++ nd ++la  +g  g+Hlgq+d +v+ are+lg
  EGE26764.1  12 LYLLTNDDEL--TTLLDKLERVFDTGaVSLLQVRRKstlkLYDLATVYREAEMIVSLANDYDIKVVMNDSLELASHFGT-GLHLGQRDGSVRVAREILG 107
                 7999996666..9*************9*********555447999*********************************9.******************* PP

    TMP-TENI  95 pdliiGlSvhslee.aeeaealgadYigvGpifpTdtKkdaeplgleglkelaealeiPvvaiGGitlenvaevl....eagadgvavvs 179
                 ++++iG ++h++    +ea+++ga+Y ++G+ f++ tK+ a+ +  + lk+++e l  P+++iGGitlen+++++     a +d +av  
  EGE26764.1 108 DHVVIGRTCHTDLAlFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACE-LDFPLCVIGGITLENIHQLRdklnGAAIDYIAVTA 196
                 ***********99989*************************************9.79*****************9666666777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1616.01
//
Query:       EGE26765.1  [L=145]
Description: histidine triad (HIT) protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-11   43.6   0.0    8.7e-11   42.4   0.0    1.6  2  HIT       HIT domain


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   4.8e-15   8.7e-11       4      97 ..      10      98 ..       7      99 .. 0.95
   2 ?   -1.9   0.0      0.33   5.9e+03      52      66 ..     113     127 ..     110     135 .. 0.70

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 4.8e-15
                C-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC-T CS
         HIT  4 ipstvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprre 97
                +++ +v + +l+++ l++d + p+++Lv++   ++e+ +l+++++ ++l+++  v +++ k f       +++n a++g+ v +lH+H+i r++
  EGE26765.1 10 KDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFG-----ADKMNVAALGNQVLQLHFHHIVRYQ 98
                5788999******************************************************888.....99999999*************9987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHTCT CS
         HIT  52 lsavkkvakalqkkf 66 
                 +  +++v +++q+++
  EGE26765.1 113 MPYTQEVLSHMQQTL 127
                 556778888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1129.89
//
Query:       EGE26766.1  [L=65]
Description: hypothetical protein EA1_04752 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00063   19.6   0.0    0.00091   19.1   0.0    1.3  1  RHH_1     Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.1e-08   0.00091       4      39 .]      29      64 ..      26      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.1e-08
                EEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH CS
       RHH_1  4 irldeellerLdelarrrgrSrSelIReAlreyler 39
                ++++ e +e+Ldela+ +g+++  +I eA++ + ++
  EGE26766.1 29 FKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQ 64
                67788889***********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 504.28
//
Query:       EGE26767.1  [L=134]
Description: hypothetical protein EA1_04757 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-37  126.4   0.0    7.1e-37  126.2   0.0    1.0  1  HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antit


Domain annotation for each model (and alignments):
>> HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.0     4e-41   7.1e-37       1     123 []       3     129 ..       3     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 4e-41
  HicB_lk_antitox   1 ypiaiek.dedsaygvvvPdlpGcfsagdtleeaianakeaielhlegliedgeeipepssieellanpeyaggiwalvdvdlskldgkaeriN 93 
                      ypiai k ++++a+g+++Pd+p   sa d+l++ +++a e +++h+ gl+ dgeeip p++ +++++n++++g++wa vdvdlsk+d k+++iN
       EGE26767.1   3 YPIAILKgGDKTAHGIFFPDVPNLASACDELQDIHKMALECLDVHFSGLVADGEEIPLPTNFDAHTQNSQFDGMMWAWVDVDLSKYDVKSHKIN 96 
                      9****987899*********************************************************************************** PP

  HicB_lk_antitox  94 itlpervlkriDaavkaag...esRSgflakaa 123
                      itlp++++++iD+ v+a++   +sRS++la++a
       EGE26767.1  97 ITLPNHLIAKIDEKVAAHKslyKSRSNYLAQLA 129
                      ******************98888********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1072.64
//
Query:       EGE26768.1  [L=45]
Description: hypothetical protein EA1_04762 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 393.55
//
Query:       EGE26769.1  [L=71]
Description: hypothetical protein EA1_04767 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.058   13.5   0.1      0.063   13.3   0.1    1.1  1  DUF5073   Domain of unknown function (DUF5073)


Domain annotation for each model (and alignments):
>> DUF5073  Domain of unknown function (DUF5073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   3.5e-06     0.063      63     116 ..       6      59 ..       3      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-06
                 HHHGGGSSSTTTTHHHHHHSHHHHTT-TTHHHHTHHHHHHHH--STTHHHHHHH CS
     DUF5073  63 tsdgrlsaahlvngiviaedvlaaeevgphiaralgqivsrygatvlpnidaal 116
                 ts  r +a+   +   +a+ +l+ ++  ph+  al qi+++  ++   +i+ al
  EGE26769.1   6 TSPARQKATNTYRQKALANIALVISHTEPHVLDALNQIMAHKDCSKAMAIKVAL 59 
                 55678888888888999************************9988888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 548.44
//
Query:       EGE26770.1  [L=43]
Description: hypothetical protein EA1_04772 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       157  (0.00875676); expected 358.6 (0.02)
Passed bias filter:                      130  (0.00725082); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 362.05
//
Query:       EGE26771.1  [L=181]
Description: SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-34  117.2   0.0      7e-34  117.0   0.0    1.0  1  SpoU_methylase  SpoU rRNA Methylase family
  ------ inclusion threshold ------
      0.061   13.4   0.0      0.083   13.0   0.0    1.2  1  OTCace          Aspartate/ornithine carbamoyltransferase, Asp


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   0.0   7.8e-38     7e-34       2     142 .]       9     157 ..       8     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 117.0 bits;  conditional E-value: 7.8e-38
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCT.EEEEEEST.T-SEGCCSHHH CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeeg.falvatsl.kgkslseidlk 94 
                     +++vl+ +++p+N+G+i+R+++++ga +l+lvkp +++l+++++kra+++++e+  l v+d+++e+ ++lk  g  ++va+++  +++++e+++k
      EGE26771.1   9 IHIVLFSPKIPNNTGSIIRLCANTGA-QLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGvERIVAMTTkFSRPFYEYQFK 102
                     68************************.**********************************************9444566666689999999999 PP

                     .....TTEEEEEEBTTTBS-HHHHCTSS..EEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  95 .....ekvalvfGnEdkGlsnellelad..rlvkIpmsgeveSLNvavAvailly 142
                           kvalvfG+E++Gl++e+++ +   +++++pm ++ +SLN+a++v+i+ly
      EGE26771.1 103 ldndqHKVALVFGSETDGLPEEVRADIGanHWLRLPMLPDSRSLNLANSVGICLY 157
                     99999*******************9865449***********************9 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.3e-06     0.083      14      83 ..      20      88 ..       9     111 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.3e-06
                HHHHHHHHHHHHCT-EEEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSET CS
      OTCace 14 nvanslikllarlgmdvvlvaPkglepdkevleeakknakksggsititedleeavkgaDvvytdvwvsm 83
                n + s i+l+a +g++++lv P g+e d   l++a  +++++ ++++++++ +e  +    +  +++v m
  EGE26771.1 20 NNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEY-ATLSVHDNWQETKSALKSLGVERIVAM 88
                6678****************************9999988655.566677666665555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1553.65
//
Query:       EGE26772.1  [L=46]
Description: entericidin EcnAB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-09   36.1   0.4    7.2e-09   35.4   0.4    1.4  1  Entericidin    Entericidin EcnA/B family
  ------ inclusion threshold ------
      0.014   15.9   1.6      0.065   13.7   1.6    2.0  1  LPAM_1         Prokaryotic membrane lipoprotein lipid attachm
       0.27   11.2   1.6       0.28   11.1   1.6    1.2  1  Bacillus_PapR  Bacillus PapR protein


Domain annotation for each model (and alignments):
>> Entericidin  Entericidin EcnA/B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.4   1.2e-12   7.2e-09       2      20 .]      21      39 ..      21      39 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.2e-12
  Entericidin  2 veGaGqDvqaaGeAierAA 20
                 ++G+G+Dv++aGeA++++A
   EGE26772.1 21 IKGFGKDVSKAGEAVSDTA 39
                 79****************9 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.6   1.1e-05     0.065       1      18 []       1      19 [.       1      19 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
      LPAM_1  1 MKKilla.lgalllLsGCs 18
                MKK l+a + a+++L+GC+
  EGE26772.1  1 MKKVLVAsIAAVVVLTGCN 19
                99996665999*******8 PP

>> Bacillus_PapR  Bacillus PapR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.6   4.7e-05      0.28       1      25 [.       1      27 [.       1      40 [. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.7e-05
  Bacillus_PapR  1 mkkFLaCsLvavamLaGvaF..GvGqD 25
                   mkk L  s+ av +L G     G G+D
     EGE26772.1  1 MKKVLVASIAAVVVLTGCNAikGFGKD 27
                   9****************7422366665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 410.74
//
Query:       EGE26773.1  [L=391]
Description: oxygen-independent coproporphyrinogen III oxidase-like protein YggW [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-17   63.9   0.0    7.1e-16   59.0   0.0    2.1  2  Radical_SAM  Radical SAM superfamily
    1.7e-09   37.6   0.0    3.5e-09   36.6   0.0    1.5  1  HemN_C       HemN C-terminal domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   7.9e-20   7.1e-16       2     159 ..      17     181 ..      16     189 .. 0.81
   2 ?    2.8   0.0     0.015   1.4e+02      78     103 ..     207     232 ..     192     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 7.9e-20
                  EEESEESS--TTTSCCTT.....HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC.....CCTEEEEEEECSSCH CS
                  xxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpet.....vrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla.....vpgiritvetngtlp 89 
                  ++ ++C  +C++C+++++     v  e +  +  + + + +   +  ++++++v++ggg+p+l p ++ + +    l+      p  +it+e+n++++
   EGE26773.1  17 IHIPWCVKKCPYCDFNSHalpsqVPFENYI-EALLSDAVSQQSLV-SNRQIDTVFIGGGTPSLLP-IESFKRLFDGLRliydfAPTCEITLEANPGTL 111
                  6889************99866633333333.33333333333333.2444*************75.55555555555567799*************** PP

                  GHHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET.EEEEEEEBTTTSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Radical_SAM  90 deeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr.vvdrivglpGendee 159
                  +    ++ l  g++r+s+g++++d    l  ++r h++++  +a++++r ag++r + d ++glp++n ++
   EGE26773.1 112 EHSPFDEYLTIGINRLSIGVQSFDHN-ALTVLGRIHNPDQASNAIRAARIAGFDRvNADLMYGLPNQNPSK 181
                  **************************.999999***********************************876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.015
                  EEEEEEECSSCHGHHHHHHHHHTT-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  78 iritvetngtlpdeeklerllelgvd 103
                   ++++ t++ lpdee+++++  lg  
   EGE26773.1 207 NTTFYCTPPQLPDEEIMAEIETLGQS 232
                  57899999999999999999998854 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   3.9e-13   3.5e-09       2      65 ..     318     380 ..     317     381 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 3.9e-13
      HemN_C   2 spedrleEeiilgLRlreGldlaafeqrfgldleellaaaleklqeqGLLeldggrlrltprGr 65 
                 s + + +E++++ LRl +G++ + fe+r+gl l  +  ++  +lq qGL +ld  r+ +t+ G+
  EGE26773.1 318 SDDNLPFEFMMNALRLKDGVSTDVFETRTGL-LISTIDNEMLPLQHQGLMVLDPLRIAPTRLGF 380
                 778899*************************.88888************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3376.70
//
Query:       EGE26774.1  [L=391]
Description: ATP-dependent RNA helicase RhlB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-49  166.7   0.1    2.8e-48  164.0   0.0    2.0  2  DEAD           DEAD/DEAH box helicase
    4.9e-30  104.1   0.1      2e-29  102.2   0.2    1.9  2  Helicase_C     Helicase conserved C-terminal domain
    3.2e-10   40.3   0.2    5.3e-09   36.3   0.0    2.2  2  ResIII         Type III restriction enzyme, res subunit
     0.0025   17.5   0.0      0.014   15.1   0.0    2.0  2  AAA_30         AAA domain
  ------ inclusion threshold ------
      0.018   14.3   0.1      0.029   13.6   0.1    1.3  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
       0.12   12.7   0.5       0.54   10.5   0.1    2.3  2  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.0   9.4e-52   2.8e-48       1     175 [.      31     208 ..      31     209 .. 0.95
   2 ?    0.3   0.1      0.17   5.1e+02      65     105 ..     268     314 ..     245     333 .. 0.63

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 9.4e-52
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqls 92 
                 t+iQa+++p++l ++d +++a+TG+GKT+ fli ++++++++       +   +p+al+++PtreLa+q+l ++++++ + +l  l+i+gg++ ++ql+
  EGE26774.1  31 TPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRpfqadeiRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQLE 129
                 89**************************************99999999989999**************************999999************* PP

                 HHHTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kldng.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 +l+++ +di++gtpgr++d +++g+l l++v+++VlDEadr+ld+gf ++i+ri++++p+ t+     rq +++SAT+++dv +
  EGE26774.1 130 QLHKRpLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTE-----RQSLLFSATFNQDVMN 208
                 **8889****************************************************75544.....679********99976 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
                 HHHHHHTTTST..SEEEEEETTSSHHHHHHHH...HTT.CSEEEEEH CS
                 xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx...xxx.xxxxxxxx RF
        DEAD  65 nnlkkfkkyid..lrvlliiggvaardqlskl...dng.vdivvgtp 105
                 +++k++ +y++   +v ++ g+va+++  + l   + g v+++v+t 
  EGE26774.1 268 DQVKRLYDYLRrhHKVTMLSGDVAQQKRERYLqrfKDGeVNVLVATD 314
                 44555555544333444444444443333333333444699999985 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   3.3e+03      18      73 ..      86     142 ..      77     143 .. 0.50
   2 !  102.2   0.2   6.5e-33     2e-29       2     111 .]     244     351 ..     243     351 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
                 EEEEEESSHHHHHH....HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  18 kilifvntidrlek....vklllekk..gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 ++l+ ++t++ +++    ++ l +++   ++ ++  g    ++ ++ leq  k   d+Li t
  EGE26774.1  86 RALVLAPTRELAQQiladCREL-TRFsqLYNLCITGG----SDFDKQLEQLHKRPLDILIGT 142
                 5666666666554232232222.12221233333322....445566666666677777766 PP

  == domain 2  score: 102.2 bits;  conditional E-value: 6.5e-33
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k +al+++l    + +k++if+n++d++++  ++l  +++ kv++l g+  q++re+ l++f++ge++vL+atdva+rGi +++v++Vin+ lp+ +++
  EGE26774.1 244 KTSALKQIL-ADDSVKKTIIFANRKDQVKRlYDYL--RRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDD 339
                 788999999.89999***********887677999..8899********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgRag
  EGE26774.1 340 YVHRIGRTGRAG 351
                 **********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.8e-12   5.3e-09      26     170 ..      46     203 ..      20     204 .. 0.77
   2 ?    1.7   0.2     0.077   2.3e+02      46      96 ..     249     297 ..     220     316 .. 0.71

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.8e-12
                 EEEEEESTTSTHHHHH.HHHHHHH-S..............-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--........-SEEEEEHH CS
      ResIII  26 rglikmaTGtGKTlva.aklierllkkgkee.........kflflvprkslleqtleefkkflseayke.igkkvsgdkkka.kekdstnkkilvttiq 112
                  ++ ++ TGtGKT +  + +ie+llk   +          ++l+l+p+++l +q l + ++++   +    +    +d +k+ ++ ++   +il+ t  
  EGE26774.1  46 DAIGQAQTGTGKTATFlITIIESLLKRPFQAdeirylgepRALVLAPTRELAQQILADCRELTRFSQLYnLCITGGSDFDKQlEQLHKRPLDILIGTPG 144
                 4666889*********88888888886555599***********************6666655555443334443444444455889999********* PP

                 HHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT-...--SEEEEEESS-S CS
      ResIII 113 sldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekf...keavllglTATpe 170
                 ++         ++ el  dr +v++ DEa r+ ++     +++i++++    e   l ++AT++
  EGE26774.1 145 RIIDWV-----NKGELFLDRVEVFVLDEADRMLDMgfiPDIKRIVRHMpsnTERQSLLFSATFN 203
                 ***999.....999********************966658888866652225588999****87 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.077
                 HHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII  46 erllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                 +++l   + +k++++++rk+ ++++++ +++  + +    +++v ++k+++
  EGE26774.1 249 KQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTM--LSGDVAQQKRER 297
                 5566666777999999999999999988777666554..455555555554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.6e-06     0.014       2      98 ..      30     169 ..      29     195 .. 0.65
   2 ?   -0.5   0.0      0.28   8.4e+02     103     128 ..     268     293 ..     244     296 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.6e-06
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKt..talkalreaweaag...........grviglAptgkaAkvLaeelg....i.........eastia 74 
                 l++ Qa+++ ++l+++d  a+ ++  GtGKt  ++++ ++ ++++              r ++lApt + A+++ +++     +          +s  +
  EGE26774.1  30 LTPIQAQILPHTLANQD--AIGQAQTGTGKTatFLITIIESLLKR-PfqadeirylgePRALVLAPTRELAQQILADCReltrFsqlynlcitGGSDFD 125
                 7788************9..9**********842334455555555.3458899***99999***********955433211110111112222233333 PP

      AAA_30  75 kllkrlk....................grarlepgtllivDEag 98 
                 k l++l                     g+  l++ ++++ DEa 
  EGE26774.1 126 KQLEQLHkrpldiligtpgriidwvnkGELFLDRVEVFVLDEAD 169
                 33333335777777777777777777755666677888888875 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.28
      AAA_30 103 kqlaallkaaekagakvilvGDerQl 128
                 +q+++l + +++++   +l GD +Q 
  EGE26774.1 268 DQVKRLYDYLRRHHKVTMLSGDVAQQ 293
                 67889999999988888999999986 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   9.5e-06     0.029      40     129 ..     239     329 ..     221     350 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.5e-06
  ERCC3_RAD25_C  40 vmnpnkfracefLikyhekrgDkiivfs...DnvfaLkeyakklkk.pyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvli 129
                    v+  +k +a++ ++        k i+f+   D+v  L +y ++ +k +++ G++++++r + lq+fk   +vn+++   v+   i + + + +i
     EGE26774.1 239 VTEREKTSALKQILAD--DSVKKTIIFAnrkDQVKRLYDYLRRHHKvTMLSGDVAQQKRERYLQRFKDG-EVNVLVATDVAGRGIHVDDVTHVI 329
                    4555555555544433..33458899975558899998887765542789****************976.899999999999999988888777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00018      0.54      13     117 ..      52     185 ..      50     201 .. 0.69
   2 ?   -1.5   0.0      0.93   2.8e+03      72      90 ..     263     281 ..     206     292 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
      AAA_22  13 esGtGKTtl.lrrlleqldeeakaee.................erpevvfvtlpsst...sskdllrellralglelka...erlsseell.ealeqal 86 
                 ++GtGKT + l ++ e+l +++++++                 e +++++ ++ ++t    + +l+    ++++ +l+    ++l+       ++ + +
  EGE26774.1  52 QTGTGKTATfLITIIESLLKRPFQADeirylgepralvlaptrELAQQILADCRELTrfsQLYNLCITGGSDFDKQLEQlhkRPLDILIGTpGRIIDWV 150
                 789999965245677777777777777888888888888877766666677777777554555555555555555555566656666777777888888 PP

      AAA_22  87 rarav....ielliiDEaqh.lrseealeeLrslln 117
                 ++       +e++++DEa++ l  +  + ++++++ 
  EGE26774.1 151 NKGELfldrVEVFVLDEADRmL-DMGFIPDIKRIVR 185
                 8887799999**********66.7877777777765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.93
      AAA_22  72 rlsseellealeqalrara 90 
                  +++++ +++l+++lr+++
  EGE26774.1 263 FANRKDQVKRLYDYLRRHH 281
                 2344444455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 3264.01
//
Query:       EGE26775.1  [L=146]
Description: hypothetical protein EA1_04797 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1180.14
//
Query:       EGE26776.1  [L=292]
Description: sulfate ABC transporter permease protein CysU [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-18   66.6  23.6    2.3e-18   66.6  23.6    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        1.7    6.7   6.2          1    7.4   4.7    1.4  1  UPF0182       Uncharacterised protein family (UPF0182)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   7.9      0.15   1.3e+03      19      67 ..      14      72 ..       8      81 .. 0.63
   2 !   66.6  23.6   2.5e-22   2.3e-18       2     176 ..      81     280 ..      80     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.15
  BPD_transp_1 19 llrpliivllslPsfvlaillvlvf..........vilsilghlilpviillllsaapy 67
                   ++p++ + +++ +f+l++l++l f          ++++i ++   p +++++  ++ +
    EGE26776.1 14 RVMPFFGLSMGISIFALGLLVILPFlmmilttlqmSFDDIMQTIREPQVFAAIKLSLSM 72
                  57889999999999998888777777777788888555555555555333333333333 PP

  == domain 2  score: 66.6 bits;  conditional E-value: 2.5e-22
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf..................vilsilghlilpviillllsaapyvrlirraalr 77 
                   +++G laa   +++ ++++ +l  l++++++lP+ v +i l  +                       ++ ++ +++ ++l++ ++p++++ ++ +l 
    EGE26776.1  81 LIFGTLAAwvlVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYapnglfgqwftrlgillfNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLA 177
                   689*********************************6666555446666666666777777656777788999999********************* PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavlllnl 170
                   +l+ +++eaa ++Ga+r ++f++v+lP + p ++ g+++ f+++ g++  + f++++ ++++ +l  i+ + + +      + ++l+++++ l++++
    EGE26776.1 178 ELSVEFEEAAAVMGAGRLTTFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDvagaACVSLFMLLISLVFLF 274
                   ********************************************************99966666666666666555511122555555555555555 PP

  BPD_transp_1 171 vadilq 176
                    ++++q
    EGE26776.1 275 TMNFIQ 280
                   555555 PP

>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.7   0.00011         1     147     283 ..      24     174 ..      15     188 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00011
     UPF0182 147 slllalvllaliavllvyllsgeslgirl..kfael.skaarrhlsvllallllllalsywLdryellyskrgvvtGagYtdvnavlpaktilavialv 242
                 ++ ++++ l++i+ +l+++l+   +  ++   ++++ ++++ + +++ l + +l+   + ++ +    +  r  + G ++ ++ + lp+ + +av+ ++
  EGE26776.1  24 GISIFALGLLVILPFLMMILTTLQM--SFddIMQTIrEPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIA 120
                 3333333333333333333333222..22322222203334444555555555556666666666666666667**********************999 PP

     UPF0182 243 vavlllvaivlkk.............lklplialallvllaillgvvlpalvqk 283
                 +a l++ + ++ +             +k++++ ++++++l+++   ++  +vq 
  EGE26776.1 121 LATLYAPNGLFGQwftrlgillfnepIKIAFTPIGIWLALVVVSFPFIVRAVQP 174
                 999999988666667888888888886666666666666666555554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2351.94
//
Query:       EGE26777.1  [L=279]
Description: sulfate ABC transporter permease protein CysW [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-12   46.8  19.5    2.7e-12   46.8  19.5    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.9     0.052   9.3e+02      23      44 ..      28      56 ..      14      86 .. 0.37
   2 !   46.8  19.5   1.5e-16   2.7e-12       3     175 ..      85     274 ..      83     278 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.052
  BPD_transp_1 23 liivllslPsfvlaillvlvf..........v 44
                  +  v++++  +v   +lv vf          +
    EGE26777.1 28 IAVVFMGVMLVV---PLVSVFyealkegwqaY 56
                  333333322222...11111122233333330 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 1.5e-16
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilghlilpviillllsaapyvrlirraalrslpkdlve 85 
                   ++G+ +a   +++ ++++ ++++l ++++++ ++v ++++vl+f           ++   + ++ +++++++l+ +++++ +     +++  ++ ++
    EGE26777.1  85 IIGVALAyliTRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLLFgantrlggyleSMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQ 181
                   67888888888************************999999999*********9944445667888888888888888888888899999999999* PP

  BPD_transp_1  86 aaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG........lgtllleailgydyseisnggvlalviavlllnlvadi 174
                   aa++lGa+ wq+f+kv+lPn++  ++ g+il+ ++++g++ +++ +    G        + +++  a+++y ++++   ++  l+++++l++lva  
    EGE26777.1 182 AALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVS---GhirgetntVPLMIEIAYNEYAFTLAF--ALSSLLALLALITLVAQG 273
                   **********************************************8...444468755555555555555555444..555555555566666555 PP

  BPD_transp_1 175 l 175
                   l
    EGE26777.1 274 L 274
                   5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 2308.10
//
Query:       EGE26778.1  [L=239]
Description: sulfate ABC transporter ATP-binding protein CysA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-36  125.7   0.0    2.7e-36  125.1   0.0    1.3  1  ABC_tran     ABC transporter
    2.2e-10   40.9   1.3    0.00037   20.4   0.2    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    7.7e-06   25.5   0.1    9.3e-05   22.0   0.1    2.0  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00022   21.6   0.0     0.0019   18.6   0.0    2.1  1  AAA          ATPase family associated with various cellular a
    0.00066   20.1   0.2     0.0012   19.3   0.1    1.6  1  AAA_16       AAA ATPase domain
      0.001   19.3   0.8     0.0057   16.9   0.8    2.0  1  AAA_22       AAA domain
     0.0015   19.1   1.3     0.0015   19.1   1.3    1.7  2  AAA_23       AAA domain
     0.0019   18.2   0.0     0.0031   17.5   0.0    1.4  2  ATPase_2     ATPase domain predominantly from Archaea
     0.0033   17.2   0.2     0.0066   16.2   0.1    1.5  2  AAA_15       AAA ATPase domain
     0.0038   17.4   0.2      0.024   14.9   0.2    2.1  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
     0.0043   17.0   0.1      0.011   15.7   0.0    1.6  2  RsgA_GTPase  RsgA GTPase
     0.0063   16.1   0.5       0.15   11.7   0.2    2.3  2  AAA_25       AAA domain
      0.008   15.0   0.4       0.56    8.9   0.0    2.8  2  ABC_ATPase   Predicted ATPase of the ABC class
  ------ inclusion threshold ------
      0.012   15.4   0.2      0.023   14.4   0.2    1.4  1  AAA_29       P-loop containing region of AAA domain
      0.013   14.8   0.1        1.7    7.9   0.0    2.2  2  ATPase       KaiC
      0.015   15.0   0.0      0.028   14.1   0.0    1.7  1  AAA_30       AAA domain
      0.023   14.6   0.0      0.046   13.6   0.0    1.5  1  Rad17        Rad17 P-loop domain
      0.023   15.2   0.1      0.088   13.4   0.1    2.0  1  AAA_18       AAA domain
      0.027   14.4   0.4       0.07   13.0   0.0    1.8  2  NACHT        NACHT domain
      0.027   13.9   0.0        1.3    8.4   0.0    2.1  2  TniB         Bacterial TniB protein
      0.046   13.7   0.2       0.24   11.4   0.1    2.0  2  AAA_5        AAA domain (dynein-related subfamily)
      0.076   13.1   0.0        0.2   11.7   0.0    1.7  2  AAA_14       AAA domain
      0.086   13.1   0.1       0.34   11.1   0.0    1.9  2  AAA_28       AAA domain
       0.17   12.0   0.5       0.55   10.4   0.5    1.9  1  AAA_33       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   3.6e-39   2.7e-36       3     136 ..      20     164 ..      18     165 .. 0.96

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 3.6e-39
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esdee 84 
                 ++s++++ ge++ ++G++G+GK+tLl+++agl++ ++G+i +d+ d+++  +++ ++ ig+++q+  lf++ tv++n                 + d++
  EGE26778.1  20 EISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTD--IPVQHRGIGFVFQQYALFRHQTVAQNiafgltllprntrpsanTIDRR 116
                 799*****************************************99999..99999***********************************99999999 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++l+ ++l+++k++      ++LSgGq+qrvalaral+++pkllllDEp+
  EGE26778.1 117 VDELLDLVQLSHTKTRYP----HELSGGQRQRVALARALATEPKLLLLDEPF 164
                 ***********9777766....*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   8.1e-07    0.0006       1      45 [.      30      65 ..      30      96 .. 0.71
   2 !   20.4   0.2   4.9e-07   0.00037     212     298 ..     113     196 ..      93     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.1e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirki 45
                l+ l Gp g+GK++LL+++ +l         ++ +++++   +++
  EGE26778.1 30 LTTLLGPSGCGKTTLLRIIAGL---------ENADNGRIYFDSID 65
                689****************999.........34444444444444 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 4.9e-07
      AAA_21 212 vderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 +d+r +e  + ++  ++++ + ++elS G+++  al+ al+  +   +lll+DEp   L+ k+ ++l + lk+ +r  g+  il+TH+
  EGE26778.1 113 IDRRVDE-LLDLVQLSHTKTRYPHELSGGQRQRVALARALATEP---KLLLLDEPFGALDAKVRKSLRDSLKDIQReIGITSILVTHD 196
                 3333333.7777788899***************99999999999...9***********************88888677788999998 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   1.2e-07   9.3e-05      25     210 ..      29     208 ..      10     217 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.2e-07
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETT...EESSSSSSCEEEEEEEETTSEEEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdned...kklkiekeevsisrrvkrkgeseykingkevtk 120
                 ++t ++Gp G+GK+ ll  i    G ++a +   + + d i    +   v++  +  +f++     ++++ ++  + ++    ++  s  +i+++  + 
  EGE26778.1  29 ELTTLLGPSGCGKTTLLRII---AGLENADN--GRIYFDSIDV--TDIPVQHRGIGFVFQQYAlfrHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDEL 120
                 57889999999999999888...56555533..2333444443..455666666666665544111444445555555555556666999********* PP

                 HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvg 210
                  ++ +l +++  ++++LSgG+++ vala  +A++      l llDe   aLD+k +k + + lk  + +     i +++++e  +  +  + 
  EGE26778.1 121 LDLVQLSHTKTRYPHELSGGQRQRVALARALATEP----KLLLLDEPFGALDAKVRKSLRDSLKDIQREigITSILVTHDQEEAQAISDKIV 208
                 ****************************9999754....489**********************7777634667899999888777644433 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.6e-06    0.0019       3      66 ..      33     162 ..      31     211 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.6e-06
                 EESSTTSSHHHHHHHHHHHHTHE.....EEEEETTTCSSS........................................................... CS
         AAA   3 lyGppGtGKTllakavakelgve.....fleisgsellsk........................................................... 37 
                 l Gp G+GKT+l + +a   +++     f +i+++++  +                                                           
  EGE26778.1  33 LLGPSGCGKTTLLRIIAGLENADngriyFDSIDVTDIPVQhrgigfvfqqyalfrhqtvaqniafgltllprntrpsantidrrvdelldlvqlshtkt 131
                 89***************9854322333344444444431123444444444444444444444444444444444444444444444444444444444 PP

                 .STTHHHHHHHHHHHHHHHTS.TSEEEEEET CS
         AAA  38 .yvgesekkirelfkeakeka.kpsilfiDE 66 
                  y  e +   r+ ++ a++ a +p+ l++DE
  EGE26778.1 132 rYPHELSGGQRQRVALARALAtEPKLLLLDE 162
                 4888888888888888888887788888888 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.6e-06    0.0012      23      62 ..      27      85 ..      17     193 .. 0.54

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.6e-06
      AAA_16 23 rpelvllsGesGvGKsslvrellralekd....................ggiflrgkcdq 62
                ++el+ l G+sG+GK++l+r ++  le +                    g+ f+ +++  
  EGE26778.1 27 TGELTTLLGPSGCGKTTLLRIIAG-LENAdngriyfdsidvtdipvqhrGIGFVFQQYAL 85
                458999**************9995.44444654444444444444443323333333322 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.8   7.6e-06    0.0057       4      99 ..      27     162 ..      23     203 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.6e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..............................erpevv...........fvtlpsstsskdllrell 61 
                 t  ++++ G+sG+GKTtllr ++   ++++   +                                   +           + t ps ++ +    ell
  EGE26778.1  27 TGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYfdsidvtdipvqhrgigfvfqqyalfrhqtV----AqniafgltllpRNTRPSANTIDRRVDELL 121
                 667899**************999987655555558889999999988888888888888644440....233344532233334444444444555555 PP

      AAA_22  62 ralglelkaerlsseell.ealeqalrarav...ielliiDE 99 
                   ++l++ + +   +el   + ++ + ara    ++ll++DE
  EGE26778.1 122 DLVQLSHTK-TRYPHELSgGQRQRVALARALatePKLLLLDE 162
                 555555555.44444444444444444444455666888888 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   1.3     2e-06    0.0015       1      39 [.       2      48 ..       2      51 .. 0.82
   2 ?   -0.6   0.0       2.1   1.6e+03     149     161 ..     173     185 ..      80     217 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2e-06
      AAA_23  1 kLkienfrsf.......rdqeidFsk.gltlItGpNGaGKTTildAi 39
                ++ki+n+++        ++ +id s   lt + Gp G+GKTT+l+ i
  EGE26778.1  2 SIKIQNIHKTfgdfvalGEISIDISTgELTTLLGPSGCGKTTLLRII 48
                5888888776677787777889996637****************987 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.1
      AAA_23 149 kdkkerleeleke 161
                 k+  + l+++++e
  EGE26778.1 173 KSLRDSLKDIQRE 185
                 2222222222222 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.2e-06    0.0031      22      62 ..      30      69 ..      21     134 .. 0.79
   2 ?   -3.3   0.0       9.5   7.1e+03      97     114 ..     166     183 ..     141     197 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.2e-06
    ATPase_2 22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesi 62
                   + Gp g+GKt+Ll+ ii  le+ d  +iy++++   +i
  EGE26778.1 30 LTTLLGPSGCGKTTLLR-IIAGLENADNGRIYFDSIDVTDI 69
                56678**********98.66777788999***998876665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.5
    ATPase_2  97 eksklvfkaielllekik 114
                    ++v k++ + l++i+
  EGE26778.1 166 ALDAKVRKSLRDSLKDIQ 183
                 333444444444444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   8.8e-06    0.0066      14      62 ..      18      63 ..       2      86 .. 0.81
   2 ?   -2.4   0.0         4     3e+03     325     364 ..     156     195 ..     147     211 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.8e-06
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiek 62
                l +++id+s   lt+l G+ ++GK+++l+++  + n +    +  i++++
  EGE26778.1 18 LGEISIDISTGeLTTLLGPSGCGKTTLLRIIAGLENAD----NGRIYFDS 63
                567889988878*******************8777765....44555554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4
      AAA_15 325 villiEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 ++ll++EP   L  +  k+l ++lk++ ++     i+ TH
  EGE26778.1 156 KLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTH 195
                 5666666666666666666666666665555445555555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   3.2e-05     0.024      61      88 ..     152     179 ..     125     181 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-05
     SbcCD_C  61 epalrlvfLDEAFsklDeesiatllell 88 
                  + ++l++LDE F+ lD++ +++l + l
  EGE26778.1 152 ATEPKLLLLDEPFGALDAKVRKSLRDSL 179
                 34699***************99988776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-05     0.011      98     125 ..      27      54 ..      11      64 .. 0.81
   2 ?   -2.7   0.0       6.2   4.7e+03      68      93 ..     179     203 ..     170     212 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.4e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelel 125
                  ++++++l+G+SG GK+tL+  +++ +++
   EGE26778.1  27 TGELTTLLGPSGCGKTTLLRIIAGLENA 54 
                  45899**************999986555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.2
                  HHHHHHHTTSEEEE--TTTHTTHHHH CS
  RsgA_GTPase  68 lkeelealgyevllvsaktkegleel 93 
                  lk+  +++g++ +lv  + +e+++++
   EGE26778.1 179 LKDIQREIGITSILVTHD-QEEAQAI 203
                  455566666666666443.4444444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2    0.0002      0.15      31      50 ..      26      45 ..      22      50 .. 0.90
   2 ?    2.5   0.0      0.12        92     166     188 ..     173     195 ..     109     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
      AAA_25 31 pagelallaGapgtGKttla 50
                  gel+ l G++g+GKttl+
  EGE26778.1 26 STGELTTLLGPSGCGKTTLL 45
                679***************97 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
      AAA_25 166 galvealeriarrtgaavllvhH 188
                 ++l + l++i+r+ g++ +lv H
  EGE26778.1 173 KSLRDSLKDIQREIGITSILVTH 195
                 566678999************99 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.084        63     242     264 ..      25      48 ..      21      58 .. 0.86
   2 !    8.9   0.0   0.00075      0.56     374     420 ..     173     219 ..     123     231 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.084
                 E-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAl 264
                 i +G +t++ G+   GK+TLL+ +
  EGE26778.1  25 ISTGeLTTLLGPSGCGKTTLLRII 48 
                 66777999*************976 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00075
                 --HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-H CS
  ABC_ATPase 374 tplvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvt 420
                 ++l d ++++ +++g+++ilv+   ++  +++d+++ m++ +++++ 
  EGE26778.1 173 KSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIG 219
                 57889999999***************************988877765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   3.1e-05     0.023      16      39 ..      22      45 ..      14      51 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.1e-05
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                +i+i++ + t l GpsG GK+Tll
  EGE26778.1 22 SIDISTGELTTLLGPSGCGKTTLL 45
                577887779**************8 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.021        16      16      35 ..      25      44 ..      18      74 .. 0.87
   2 ?    7.9   0.0    0.0023       1.7     138     173 ..     169     205 ..     161     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.021
      ATPase 16 ipegrvvlitGepGtGKtif 35
                i  g+ + + G +G+GKt++
  EGE26778.1 25 ISTGELTTLLGPSGCGKTTL 44
                56789999**********97 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0023
      ATPase 138 avaReilrqlvrvl.kklgvTailvsekssseeaagg 173
                 a++R+ lr  ++ + +++g+T+ilv+  +++++a++ 
  EGE26778.1 169 AKVRKSLRDSLKDIqREIGITSILVTHDQEEAQAISD 205
                 7899***99888888************9888888775 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.7e-05     0.028      18      49 ..      28      59 ..      22     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.7e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrv 49
                  +++l Gp G GKtt+l+ ++ + +a++gr+
  EGE26778.1 28 GELTTLLGPSGCGKTTLLRIIAGLENADNGRI 59
                45999****************99999885443 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.1e-05     0.046      48      66 ..      31      49 ..      17      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.1e-05
       Rad17 48 LLisGPsGCgkstvvkvLs 66
                  + GPsGCgk+t +++++
  EGE26778.1 31 TTLLGPSGCGKTTLLRIIA 49
                5578************987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   0.00012     0.088       3      25 ..      33      63 ..      32     216 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00012
      AAA_18  3 ltGtpGvGKttlakeLskrlgf........g 25
                l G++G+GKttl + ++ +++         +
  EGE26778.1 33 LLGPSGCGKTTLLRIIAGLENAdngriyfdS 63
                78**************877544664444342 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.4e-05      0.07       3      21 ..      31      49 ..      29      58 .. 0.87
   2 ?   -1.2   0.1       2.3   1.7e+03      96     115 ..     166     185 ..     104     217 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.4e-05
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                  l G++G+GKTtLl+ +a
  EGE26778.1 31 TTLLGPSGCGKTTLLRIIA 49
                6799***********9887 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.3
                 -TCH.........HHHHHCT CS
       NACHT  96 dlgqkekqpvrtlLselirk 115
                  l++k ++++r+ L+++ r+
  EGE26778.1 166 ALDAKVRKSLRDSLKDIQRE 185
                 44444444444444444433 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.058        43      39      58 ..      32      51 ..      23      72 .. 0.81
   2 ?    8.4   0.0    0.0018       1.3     105     161 ..     140     194 ..     107     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.058
        TniB 39 llvGdsnnGKtmivekFarl 58
                 l+G+s +GKt++++  a l
  EGE26778.1 32 TLLGPSGCGKTTLLRIIAGL 51
                689*********99866655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0018
        TniB 105 skleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvG 161
                  + ++ +l+   ++++++L++DE   +l   a+ ++ +  +lk +++e+ i+ +lv 
  EGE26778.1 140 GQRQRVALARALATEPKLLLLDEPFGAL--DAKVRKSLRDSLKDIQREIGITSILVT 194
                 3444444444556789*******99999..566678899************999985 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00032      0.24       4      22 ..      33      51 ..      31      59 .. 0.88
   2 ?    0.1   0.0         1   7.5e+02      56      91 ..     144     181 ..      90     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00032
                EE--SSSSHHHHHHHGGGG CS
       AAA_5  4 LvGppGtgKselaerlaaa 22
                L+Gp+G+gK++l + +a +
  EGE26778.1 33 LLGPSGCGKTTLLRIIAGL 51
                99***********999865 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1
                 .--------.G-SEEEEESGGG--.HHHHHHHHHHHHS CS
       AAA_5  56 dsplvraar.egeilvlDEverae.sevlnsLlsllee 91 
                   +l ra   e+++l+lDE + a   +v +sL   l +
  EGE26778.1 144 RVALARALAtEPKLLLLDEPFGALdAKVRKSLRDSLKD 181
                 33444443358888888886666556666666555555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00027       0.2       4      41 ..      30      66 ..      27      94 .. 0.74
   2 ?   -1.7   0.0       3.8   2.8e+03      63      72 ..     153     162 ..     122     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00027
      AAA_14  4 ilvitGaRrvGKTtllkqlikellvkkesilyinldde 41
                + ++ G+  +GKTtll+ ++  +   ++  +y++  d 
  EGE26778.1 30 LTTLLGPSGCGKTTLLRIIAGLEN-ADNGRIYFDSIDV 66
                67899**********988875555.5555666655554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.8
      AAA_14  63 ekktylflDE 72 
                  + ++l+lDE
  EGE26778.1 153 TEPKLLLLDE 162
                 3677888888 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00046      0.34       4      20 ..      33      49 ..      31      70 .. 0.84
   2 ?   -2.2   0.0       5.8   4.4e+03     134     161 ..     172     198 ..     166     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00046
      AAA_28  4 itGgestGKTtlleaLa 20
                ++G++++GKTtll+ +a
  EGE26778.1 33 LLGPSGCGKTTLLRIIA 49
                79***********9888 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.8
      AAA_28 134 reaiderlrealrelgipviivpsgdve 161
                 r+ + + l+++ re+gi  i v + d e
  EGE26778.1 172 RKSLRDSLKDIQREIGITSILV-THDQE 198
                 6777788999999999999988.66655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00073      0.55       3      19 ..      32      48 ..      30     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00073
      AAA_33  3 llvGlpGsGKstlaerl 19
                 l G++G+GK+tl++ +
  EGE26778.1 32 TLLGPSGCGKTTLLRII 48
                678**********9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 1943.89
//
Query:       EGE26779.1  [L=472]
Description: DNA repair protein RadA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-15   57.5   0.2    6.2e-15   55.3   0.1    2.1  2  AAA_25         AAA domain
    2.6e-15   56.4   0.2    8.7e-10   38.3   0.1    2.2  2  ATPase         KaiC
    1.1e-11   44.3   4.9    1.6e-11   43.7   4.9    1.3  1  Rubredoxin_2   Rubredoxin metal binding domain
    6.8e-07   29.2   0.0    1.7e-06   27.8   0.0    1.7  1  ChlI           Subunit ChlI of Mg-chelatase
    2.8e-05   23.5   0.5    0.00027   20.3   0.5    2.4  1  Rad51          Rad51
    0.00011   21.9   0.0    0.00023   20.8   0.0    1.5  1  Lon_C          Lon protease (S16) C-terminal proteolytic doma
    0.00016   21.1   0.0    0.00027   20.4   0.0    1.3  1  DnaB_C         DnaB-like helicase C terminal domain
     0.0029   18.0   0.4     0.0077   16.6   0.4    1.7  1  AAA_16         AAA ATPase domain
     0.0038   16.7   1.2     0.0056   16.2   1.2    1.3  1  RecA           recA bacterial DNA recombination protein
  ------ inclusion threshold ------
      0.018   14.3   0.0      0.031   13.5   0.0    1.3  1  DUF2075        Uncharacterized conserved protein (DUF2075)
      0.027   14.2   0.0       0.14   11.8   0.0    2.1  3  AAA_24         AAA domain
      0.076   13.0   0.8       0.15   12.0   0.8    1.5  1  ADK_lid        Adenylate kinase, active site lid
      0.083   11.5   0.2        6.4    5.3   0.1    2.1  2  GvpD           GvpD gas vesicle protein
       0.14   11.3   1.0       0.24   10.5   1.0    1.2  1  PAXNEB         PAXNEB protein
       0.23   11.2   0.1       0.23   11.2   0.1    1.8  2  A2L_zn_ribbon  A2L zinc ribbon domain
       0.47   10.2   1.7       0.64    9.8   0.4    2.0  2  AAA_29         P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.1   5.6e-18   6.2e-15      26     193 ..      91     232 ..      84     233 .. 0.87
   2 ?   -1.6   0.0       1.6   1.7e+03      69      86 ..     301     317 ..     293     364 .. 0.69

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 5.6e-18
      AAA_25  26 vkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggt 124
                 ++g l+ag+++l+ G+pg GK+t++l+ a+ +a G+++        g  ly+ +E+s ++++ R+ ++g      +rl+vl                  
  EGE26779.1  91 LGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLS-------GSALYITGEESLSQVAMRAVRLGLPT---DRLRVLAE---------------- 163
                 4555679*****************************875.......59**********99999988888886...89999963................ PP

      AAA_25 125 lltadvdaleaaieevegvrlvviDplsralggdensnsd....vgalvealeriarrtgaavllvhHvgKes 193
                      vd + aa++  e+++  viD+++ ++    +s+      +++  + l r a++tg a++lv Hv Ke+
  EGE26779.1 164 ---TNVDTICAALTT-EQPAIAVIDSIQTLFTEAIQSAPGgvaqIRESAAVLTRYAKQTGTALFLVGHVTKEG 232
                 ...55788*******.*************99987777766443358999999999****************97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
      AAA_25  69 peqgkVlyvsaEdsedel 86 
                 p  g V++vs E+++  l
  EGE26779.1 301 PIAGSVVMVSREGTR-PL 317
                 567899999999887.44 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.1   7.7e-13   8.7e-10       2      77 ..      81     158 ..      80     162 .. 0.89
   2 !   16.0   0.0   5.4e-06     0.006     113     208 ..     171     269 ..     162     285 .. 0.73

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 7.7e-13
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaek..ygepgvfvtveepaedlrenakslGwdlekl 77 
                 +tgI ++D++l gG+  g+vvli G+pG GK+++ lq +i+ a+        +++t ee+ +++  +a +lG  +++l
  EGE26779.1  81 PTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGdsLSGSALYITGEESLSQVAMRAVRLGLPTDRL 158
                 9****************************************98751144578****************9999877665 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 5.4e-06
      ATPase 113 eaikeikakrvviDsitgl.ayeeke.....avaReilrqlvrvlkklgvTailvsekssseeaaggygveefivdgvivLdlkeieeelvRtleivkm 205
                  a+ + +    viDsi++l ++  ++     a++Re    l+r  k++g Ta++     ++e+a  g++v e++vd v+  +   +++++ R+++ +k 
  EGE26779.1 171 AALTTEQPAIAVIDSIQTLfTEAIQSapggvAQIRESAAVLTRYAKQTG-TALFLVGHVTKEGALAGPRVLEHMVDTVLYFE--GESDSRFRMIRAIKN 266
                 55566667789********544333212222457777777777766666.778888878999*********99***987766..677789999999998 PP

      ATPase 206 Rgt 208
                 R  
  EGE26779.1 267 RFG 269
                 865 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   4.9   1.4e-14   1.6e-11       1      28 []       8      35 ..       8      35 .. 0.98

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 1.4e-14
  Rubredoxin_2  1 YvCsqCGfesakwfGrCpsCgsWntlke 28
                  Y+C++CG+ + kw G+C +Cg+Wntl+e
    EGE26779.1  8 YICQNCGAIYGKWAGQCTDCGEWNTLVE 35
                  9*************************98 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.5e-09   1.7e-06      45     121 .]     364     439 ..     348     439 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.5e-09
        ChlI  45 itvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGslrpvkgvlpialaakkegikkvivpken 121
                 + vn+    +k   +  DL++ i+  +++++++   +++++Ge++l+G++rpv +  + + +a k+g++++ivp++n
  EGE26779.1 364 VYVNVVGG-VKVMETGSDLAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRAN 439
                 55665554.55556667999999999999999999***************************************998 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.5   2.4e-07   0.00027      18     102 ..      79     160 ..      54     319 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.4e-07
                 EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HHHH CS
       Rad51  18 qlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldkeev 102
                 ++ tG  ++D++LgGG+ +gs+  i G+ + Gk+ +  + ++ +    +l+G    a+yi  e ++    + ++      d+ +v
  EGE26779.1  79 RMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSG---SALYITGEESLSQVAMRAVRLGLPTDRLRV 160
                 478************************************9999988877766...699**9999887766665543333333334 PP

>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     2e-07   0.00023     114     203 ..     381     467 ..     355     469 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2e-07
                 HHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B--EESBHHHHHHHHB CS
       Lon_C 114 vtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleiilveevdevlkaal 203
                 ++++ a  s +++k+    + + Ge+ L+G++ p+   +e+l  a + g ++ i+P++n+   +  P+   ++++ii+v+++de + +a+
  EGE26779.1 381 LAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAAN-HPQ--FKNIQIIAVDRLDEAIYQAF 467
                 67888999***************************************************98765.465..47899********9998876 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.4e-07   0.00027       3      69 ..      81     150 ..      80     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.4e-07
                 XSSTHHHHHHCT.SBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSE..EEEEESSSXHHHHHHHHHH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
      DnaB_C   3 stgfkdLDklts.GlqkgdliiiAarpsmGktalalniaenaavkeklp..vavfslemsaeqlvqRlls 69 
                 +tg  ++D++++ Gl  g +++i++ p++Gk+++ l+ a n+a+ ++l+   +++  e s +q+++R + 
  EGE26779.1  81 PTGIGEFDRVLGgGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSgsALYITGEESLSQVAMRAVR 150
                 799999**988527*************************9999866654458899999999999999875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   6.9e-06    0.0077      20      81 ..      91     149 ..      86     225 .. 0.50

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.9e-06
      AAA_16  20 rsgrp...elvllsGesGvGKsslv.rellralekd...g.giflrgkcdqlesaipysalaqalareel 81 
                   g+    ++vl+ G++G+GKs+++ +++ + + +d   g +++++g+   +          q++ r  +
  EGE26779.1  91 LGGGLvagSVVLIGGDPGIGKSTILlQTAINMAAGDslsGsALYITGEESLS----------QVAMR-AV 149
                 5555555589***************533333333334642244455544444..........22222.22 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.2     5e-06    0.0056      18     146 ..      65     192 ..      55     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5e-06
                 SS--TTS--.-----E.E--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHH...HHHHHHTT--EEEEESS----HH..HHHHTT--GGG-EE CS
        RecA  18 simklgdekeklkvet.issGslaldialGiGGlpkGriieiyGpessGkttlalha...iaeaqkkggvaafidaehaldpk..yakklGvdidellv 110
                 ++m l d+   +++et +++G   +d  lG GGl  G ++ i G    Gk+t+ l++   +a     +g a +i  e +l  +   a +lG+ +d l v
  EGE26779.1  65 AVMTL-DHV-GVTLETrMPTGIGEFDRVLG-GGLVAGSVVLIGGDPGIGKSTILLQTainMAAGDSLSGSALYITGEESLSQVamRAVRLGLPTDRLRV 160
                 68888.444.345554399***********.***********************997322455677899***********9751157789******988 PP

                 E--SSHHHHHHHHHHHHTTT--SEEEEE-TTT---S CS
        RecA 111 sqpdtGeqaleiadalvrsgaidlivvdsvaalvpk 146
                       e  ++ + a + +    + v+ds+ +l  +
  EGE26779.1 161 LA----ETNVDTICAALTTEQPAIAVIDSIQTLFTE 192
                 54....444443333334444556677777777655 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.8e-05     0.031       2      52 ..      99     150 ..      98     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.eddeeertavylsvNhplvlvlreala 52 
                 +vvl+ G++G GK+ +ll+ + ++   d++  +a y+++ ++l +v  +a++
  EGE26779.1  99 SVVLIGGDPGIGKSTILLQTAINMaAGDSLSGSALYITGEESLSQVAMRAVR 150
                 699*****************999988899999999**999999999887776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00013      0.14       4      43 ..     100     149 ..      97     200 .. 0.71
   2 ?   -1.4   0.0       1.5   1.6e+03     158     172 ..     238     252 ..     207     267 .. 0.78
   3 ?   -3.2   0.0         5   5.6e+03      63      80 ..     448     465 ..     434     468 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
      AAA_24   4 kiliyGpsgiGKTtlakel..........gpkplfidtekGlksldadkf 43 
                  +li G++giGK+t++++             ++l+i  e++l ++  + +
  EGE26779.1 100 VVLIGGDPGIGKSTILLQTainmaagdslSGSALYITGEESLSQVAMRAV 149
                 68999************999999999999999999999999988877764 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
      AAA_24 158 nelkeevDlvlranl 172
                 + l+++vD+vl+ + 
  EGE26779.1 238 RVLEHMVDTVLYFEG 252
                 57899*****99764 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5
      AAA_24  63 ladyktlviDtideleel 80 
                  ++++++ +D +de+  +
  EGE26779.1 448 FKNIQIIAVDRLDEAIYQ 465
                 567899999999999765 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   0.00014      0.15       3      29 ..       9      29 ..       8      35 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                E-TTT--EEETTTB--SSTTB-TTT-- CS
     ADK_lid  3 vCpkCGrsYhvvfnpPkveglCDkCGe 29
                +C +CG++Y       k  g C +CGe
  EGE26779.1  9 ICQNCGAIYG------KWAGQCTDCGE 29
                9*********......89********9 PP

>> GvpD  GvpD gas vesicle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0072       8.1     238     283 ..      78     121 ..      64     140 .. 0.78
   2 ?    5.3   0.1    0.0057       6.4      76     187 ..     151     265 ..      98     288 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0072
        GvpD 238 akfsvglrdldkllseGtdrGsvvildlgkdlsrdawsvlvlaair 283
                 +++ +g+++ d++l +G   Gsvv +    d +    ++l  +ai+
  EGE26779.1  78 TRMPTGIGEFDRVLGGGLVAGSVVLIG--GDPGIGKSTILLQTAIN 121
                 577899999999999999999999864..45554444555555554 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0057
        GvpD  76 leldldvdvPiekldlesllefvdeiaaiatkliia.ldswe.lvyeylaerydsPediktvkndlvvlaresgvrlvlvletaa......nsrleyiv 166
                 l+l++d+   + + +++++       a +++++ ia +ds + l  e++        +i+     l   a+++g  l lv    +      +  le++v
  EGE26779.1 151 LGLPTDRLRVLAETNVDTICA-----ALTTEQPAIAvIDSIQtLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKegalagPRVLEHMV 244
                 555555555554555554443.....334889999846996524455665544444445555555666688999999999754431111225679**** PP

        GvpD 167 dGvvtlnvkeddrgrlrrdlr 187
                 d v+ ++ + d r r++r ++
  EGE26779.1 245 DTVLYFEGESDSRFRMIRAIK 265
                 *******999*9999999875 PP

>> PAXNEB  PAXNEB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.0   0.00021      0.24      21      43 ..      82     104 ..      76     117 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
      PAXNEB  21 tGtpsLDklLgGGLplGsillie 43 
                 tG+ ++D++LgGGL  Gs++li 
  EGE26779.1  82 TGIGEFDRVLGGGLVAGSVVLIG 104
                 9********************96 PP

>> A2L_zn_ribbon  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0002      0.23      17      31 ..       3      17 ..       1      19 [. 0.88
   2 ?   -2.4   0.7       3.8   4.2e+03      23      28 ..      23      28 ..      23      29 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
  A2L_zn_ribbon 17 seqgylvCieCgasf 31
                   ++++ ++C++Cga++
     EGE26779.1  3 KAKSSYICQNCGAIY 17
                   67899********97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.8
  A2L_zn_ribbon 23 vCieCg 28
                   +C +Cg
     EGE26779.1 23 QCTDCG 28
                   588887 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   0.00058      0.64      22      39 ..      97     115 ..      85     125 .. 0.85
   2 ?   -2.5   0.0       3.9   4.4e+03      38      47 ..     182     191 ..     181     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00058
      AAA_29  22 kg.atlltGpsGsGKSTll 39 
                 +g ++l+ G+ G GKST+l
  EGE26779.1  97 AGsVVLIGGDPGIGKSTIL 115
                 46689*************8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.9
      AAA_29  38 llDAiqalLv 47 
                 ++D+iq+l++
  EGE26779.1 182 VIDSIQTLFT 191
                 79*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.37
# Mc/sec: 3783.12
//
Query:       EGE26780.1  [L=610]
Description: phosphoenolpyruvate carboxykinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-165  550.0   4.2   2.6e-165  549.6   4.2    1.2  1  PEPCK_GTP  Phosphoenolpyruvate carboxykinase C-terminal P-loo
     1e-103  345.6   0.0   1.7e-103  344.9   0.0    1.3  1  PEPCK_N    Phosphoenolpyruvate carboxykinase N-terminal domai


Domain annotation for each model (and alignments):
>> PEPCK_GTP  Phosphoenolpyruvate carboxykinase C-terminal P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  549.6   4.2  2.9e-169  2.6e-165       1     357 [.     242     606 ..     242     607 .. 0.97

  Alignments for each domain:
  == domain 1  score: 549.6 bits;  conditional E-value: 2.9e-169
                 -EEES-EEEEEE-TTS-EEEEEEE-TTTSSHHHHHT---S..STT-EEEEEESS-EEEEE-TTSBEEEE---SEEEEE-TT-STTT-HHHHHHTTBS-E CS
   PEPCK_GTP   1 wLaEhmlilgvtspegkkkyvaaafpsacGKtnlamlept..legwkvetvgdDiawlkfgedgrlraiNpeaGfFgvapgtnektnpnalktlkknti 97 
                 wLaEhmlilgvt+p+gkk+y+aaafpsacGKtn+aml+p+  +egwkvetvgdDiaw+k++edg+l+aiNpeaGfFgvapgtn+ktn n+++tl +++i
  EGE26780.1 242 WLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPagYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVI 340
                 9**************************************9889******************************************************** PP

                 EES-EEETTS-EE-TT--------EE-TTSSEE-T.T-SSS-TT-EEEEEGGGSTTB-TTTT-TT-EEEEEEEEEEB-SSSS-SEEE-SSHHHHHHHHH CS
   PEPCK_GTP  98 ftNvaltedgdvwWegleeeapaelidwkgkkwtkekekaahpnsrftvpakqlpiiapewedpeGvpisaiifggrrsetvplvleafdwehGvflga 196
                 +tNva+t+dg+vwWeg+++e+pa+l++wk +++t   e+aah+n+rftv+akq+p+i+p+we+peGvpisa+ifggrr++tvplv eafdw +Gv+ +a
  EGE26780.1 341 YTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTG-AERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAA 438
                 ******************************87776.899************************************************************ PP

                 T-EEE--TTSSS-TT-EEE-GGG-GGG-SS-HHHHHHHHHHHTTST.......T-B--EEEEEES--B-TTSSBSS--GGGHHHHHHHHHHHHTT..S- CS
   PEPCK_GTP 197 tlesetTaaaegkvgvvrrdPfamlpFlgynlgdYlehwlelgkkl.......ekklPkifsvNwfrkdeegkflWPGfgenlrvlkWilkrvegeaka 288
                 t++setTaaa+g++gvvrrdPfamlpF gyn++dY++hwl++g++l       +++lPk+f+vNwfr+d++g+f+WPGfg+n+rvl+Wi++r+eg+a+a
  EGE26780.1 439 TMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLgkkakaaGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANA 537
                 ******************************************66655555677899******************************************* PP

                 EEETTEEEE-BTTC--TT-..TT--HHHHS---HHHHHHHHHHHHHHHHHTGGGS-HHHHHHHHHHHHH CS
   PEPCK_GTP 289 vetpiGlvPkkedldlkgldlskedleellsvdkeewkeeveeieelfeklgeklPkelleeleelekr 357
                 v+tpiGlvP+++d+++++ d++k+++e ++s dk++w++e+e+++elf+klge++P++l+++ ++l+++
  EGE26780.1 538 VRTPIGLVPTYDDINWDQSDFTKAQYELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKAD 606
                 *************************************************************99999875 PP

>> PEPCK_N  Phosphoenolpyruvate carboxykinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.9   0.0  1.9e-107  1.7e-103       2     218 .]      19     238 ..      18     238 .. 0.99

  Alignments for each domain:
  == domain 1  score: 344.9 bits;  conditional E-value: 1.9e-107
                 HHHHHHHHH--SEEEE----HHHHHHHHHHHHHTTSEEE-..TTSBS-EEE---TTSSS--GGGEEEE-SSHHHH-SS--EE-HHHHHHHHHHHSTTTT CS
     PEPCK_N   2 fveevaelcqPdkvvvcdgseeeneellkelvekgelikl..ekypnsylarsdpkDvARvesrTfictekeedagplnnwmdpeemkeelkelfkgcm 98 
                 +v+e+a+l++P+++ +cdgseeen++l++ ++++g++ikl  +k+pnsyla+sdp+DvARve+rT+ic+++e dag++nnw++p++m+++l++lf+gcm
  EGE26780.1  19 WVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLdeDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCM 117
                 *****************************************99******************************************************** PP

                 TTSEEEEEEEEES-TTSTT-EEEEEEES-HHHHHHHHHHSEESHHHHTT-SS..TSEEEEEE-S--S.S-SS-BTB---GG-EEEEEGGGTEEEEES-- CS
     PEPCK_N  99 kGrtmyVipfsmGpvgsplskigveiTdsaYVvlsmrimtrvgkkvleklgeeeefvkclHsvgapl.egqkdvkWpcnekkyivhfpeereilsvgsg 196
                 +GrtmyV+pfsmGp+gs++++ig+eiTds+YVv+smr m+r+gk+v++ lg+++e+v+c+H+vg+pl egqkdv+Wpcn++kyivhfpe+rei+s+gsg
  EGE26780.1 118 AGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLtEGQKDVAWPCNDDKYIVHFPETREIWSYGSG 216
                 ******************************************************************9999***************************** PP

                 SHHHH-TCCHHHHCHHHHHHHH CS
     PEPCK_N 197 YgGNaLlgKkcfalRiasviar 218
                 YgGNaLlgKkc+alRias+++r
  EGE26780.1 217 YGGNALLGKKCLALRIASAMGR 238
                 *******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4878.74
//
Query:       EGE26781.1  [L=819]
Description: LysM domain protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-51  172.7   3.2    5.5e-12   45.5   0.0    6.3  7  LysM      LysM domain
    3.7e-25   87.8   0.0    8.7e-25   86.7   0.0    1.6  1  SLT       Transglycosylase SLT domain
     0.0019   18.2   0.0         12    6.1   0.0    4.7  5  OapA      Opacity-associated protein A LysM-like domain
     0.0072   16.4   1.0         11    6.3   0.0    4.1  4  DUF2802   Protein of unknown function (DUF2802)
  ------ inclusion threshold ------
      0.038   13.2   0.2      0.089   12.0   0.0    1.8  2  SLT_2     Transglycosylase SLT domain
      0.071   13.2   0.1       0.34   11.0   0.1    2.2  2  HTH_7     Helix-turn-helix domain of resolvase
       0.43   10.7   1.8         22    5.3   0.0    4.2  5  HTH_28    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.41     1e+03       7      39 ..     225     259 ..     225     260 .. 0.76
   2 ?   -1.2   0.0      0.88   2.2e+03       8      33 ..     319     348 ..     314     356 .. 0.76
   3 ?   -3.3   0.0       4.1     1e+04      19      30 ..     404     415 ..     401     421 .. 0.79
   4 !   40.7   0.1     7e-14   1.8e-10       1      43 [.     571     613 ..     571     614 .. 0.98
   5 !   37.8   0.0   5.7e-13   1.5e-09       1      44 []     647     690 ..     647     690 .. 0.98
   6 !   45.5   0.0   2.2e-15   5.5e-12       1      44 []     725     768 ..     725     768 .. 0.99
   7 !   42.5   0.0   1.9e-14   4.8e-11       1      44 []     774     817 ..     774     817 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.41
                 --HHHHHHHCTCHHHHHHHHC...TCSSCGG--TTE CS
        LysM   7 DTLwsIAkrygitveklleaN...nlsspdkifpGq 39 
                 D L s+ +++g ++ +l+++N   +  s   i+++q
  EGE26781.1 225 DFLTSLYNQFGSWELALAAYNagpGRVSRA-IKANQ 259
                 668888899************876555545.66666 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.88
                 -HHHHHHHCTCHHHHHHHHC....TCSSCG CS
        LysM   8 TLwsIAkrygitveklleaN....nlsspd 33 
                 +L+ +A   g++v++l+ +N    n   + 
  EGE26781.1 319 SLSEVATVTGLSVSELRLLNpallNFTVDE 348
                 67888888899******9998777655554 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.1
                 HHHHHHHHCTCS CS
        LysM  19 tveklleaNnls 30 
                 + ++l++aN l 
  EGE26781.1 404 SQQELIAANTLP 415
                 568999999775 PP

  == domain 4  score: 40.7 bits;  conditional E-value: 7e-14
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLki 43 
                 YtV+ GD+L s+A+ +g+tv +l+++Nnl ++ +i +Gq+L++
  EGE26781.1 571 YTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWL 613
                 9****************************************85 PP

  == domain 5  score: 37.8 bits;  conditional E-value: 5.7e-13
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44 
                 ++V++G++L +IA+ry+i++ +l++ N+ls +d + +Gq+Lk+P
  EGE26781.1 647 HRVQSGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLP 690
                 89****************************************98 PP

  == domain 6  score: 45.5 bits;  conditional E-value: 2.2e-15
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44 
                 YtV++GD+L  +++r+g+ + +l+ aN+l s+ ++++Gq+Lk+P
  EGE26781.1 725 YTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVP 768
                 9******************************************9 PP

  == domain 7  score: 42.5 bits;  conditional E-value: 1.9e-14
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44 
                 YtVk GD L ++A+rygi+ ++l+++Nnl ++  +++Gq+L++P
  EGE26781.1 774 YTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVP 817
                 9******************************************9 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   3.4e-28   8.7e-25       7     111 ..     158     261 ..     154     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 3.4e-28
                 HHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHHHHHTT CS
         SLT   7 ekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyngslllalaAYNaGegtvkkak 105
                 e +++  ps+la ++  ES+++p+A+s++ a+GL+Q++pst + +gl+++ ++d+++d++++++a+  +L sly+q++ s++lalaAYNaG+g+v +a+
  EGE26781.1 158 EAERRGIPSELALLPIIESSYDPTATSNAAAAGLWQFIPSTGRIYGLNQSATYDGRRDVIESTRAAYDFLTSLYNQFG-SWELALAAYNAGPGRVSRAI 255
                 5556667999********************************************************************.******************** PP

                 HSSHHH CS
         SLT 106 kevkkk 111
                 k ++++
  EGE26781.1 256 KANQDQ 261
                 *99875 PP

>> OapA  Opacity-associated protein A LysM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.2   1.3e+04       6      27 ..     313     334 ..     310     337 .. 0.78
   2 ?    1.6   0.0      0.12   3.1e+02       3      27 ..     569     593 ..     567     605 .. 0.86
   3 ?    3.2   0.0     0.038        97       3      31 ..     645     670 ..     643     694 .. 0.81
   4 ?    0.0   0.0      0.37   9.4e+02       3      28 ..     723     748 ..     722     769 .. 0.67
   5 !    6.1   0.0    0.0046        12       3      50 ..     772     815 ..     770     818 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.2
        OapA   6 qvkkgktLaqvFRdnnLplsdv 27 
                  v+ g +L++v    +L++s++
  EGE26781.1 313 PVNYGVSLSEVATVTGLSVSEL 334
                 5788999999988888888887 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
        OapA   3 keyqvkkgktLaqvFRdnnLplsdv 27 
                 ++y+v+ g++L+ v   ++L + ++
  EGE26781.1 569 ESYTVRAGDSLTSVAATHGLTVGQL 593
                 58************99999998776 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.038
        OapA   3 keyqvkkgktLaqvFRdnnLplsdvnala 31 
                  +++v++g++L+ + R  n++l     la
  EGE26781.1 645 ATHRVQSGESLTAIARRYNISLHA---LA 670
                 6899************99998654...44 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.37
        OapA   3 keyqvkkgktLaqvFRdnnLplsdvn 28 
                 ++y+v++g++L+ +    ++ + d+ 
  EGE26781.1 723 ENYTVRSGDSLTMLSNRFGVAIGDLA 748
                 5799******9988777777777653 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0046
        OapA   3 keyqvkkgktLaqvFRdnnLplsdvnalakveGadkplSnlksGqkvr 50 
                  +y+vk g+ L  + R  +++  ++ ++ + e    p ++l+ Gq ++
  EGE26781.1 772 TTYTVKAGDGLIALARRYGISTQELAKMNNLE----PTADLRIGQVLT 815
                 58***************************999....888888888776 PP

>> DUF2802  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0042        11      41      63 ..     315     337 ..     313     338 .. 0.92
   2 ?    2.7   0.0     0.056   1.4e+02      47      64 ..     425     442 ..     418     443 .. 0.89
   3 ?    2.6   0.2      0.06   1.5e+02      18      56 ..     627     665 ..     608     667 .. 0.71
   4 ?   -3.1   0.0       3.4   8.7e+03      43      59 ..     779     795 ..     776     797 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0042
     DUF2802  41 rqGasveelaeecgLsraEAeLl 63 
                 + G+s++e+a   gLs +E  Ll
  EGE26781.1 315 NYGVSLSEVATVTGLSVSELRLL 337
                 679*****************998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.056
     DUF2802  47 eelaeecgLsraEAeLll 64 
                 + +++e  Ls++E+ L++
  EGE26781.1 425 NTIVQEPALSKSEINLIA 442
                 6799999*********97 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.06
     DUF2802  18 erleeleqqdpqsklYsqAiklvrqGasveelaeecgLs 56 
                 +  ++ +++ +++   s A   v++G s+  +a++ ++s
  EGE26781.1 627 QTSQAAQSTKNNQSTQSTATHRVQSGESLTAIARRYNIS 665
                 222222333456666789999**************9998 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 3.4
     DUF2802  43 GasveelaeecgLsraE 59 
                 G  +  la++ g+s +E
  EGE26781.1 779 GDGLIALARRYGISTQE 795
                 5566679999***9998 PP

>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.5e-05     0.089     146     186 ..     181     221 ..     112     238 .. 0.83
   2 ?   -3.7   0.2       2.2   5.6e+03      48      69 ..     626     647 ..     614     667 .. 0.40

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.5e-05
       SLT_2 146 eelkGSwaGamGltQFmPssylkyAv..DfdgdgrrDlwnspa 186
                 +    S a a Gl QF+Ps+ + y+       dgrrD+++s  
  EGE26781.1 181 T--ATSNAAAAGLWQFIPSTGRIYGLnqSATYDGRRDVIESTR 221
                 3..379999****************9555678******99854 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.2
       SLT_2  48 ktleeYlkrfvtekriakGraf 69 
                 ++ ++  +++ ++++++  ++ 
  EGE26781.1 626 QQTSQAAQSTKNNQSTQSTATH 647
                 2222222222222222222222 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00013      0.34      10      35 ..     641     666 ..     634     669 .. 0.85
   2 ?   -2.5   0.0       2.2   5.6e+03      26      35 ..     784     793 ..     778     796 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                 HHGGGGSSTTTT--STTTSSSS---S CS
       HTH_7  10 dinrvvkLleeGisiskIAkevnisR 35 
                 ++ ++  ++++G+s ++IA+++nis 
  EGE26781.1 641 TQSTATHRVQSGESLTAIARRYNISL 666
                 67889999****************95 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
                 TTSSSS---S CS
       HTH_7  26 kIAkevnisR 35 
                 ++A++++is 
  EGE26781.1 784 ALARRYGIST 793
                 589*****96 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.78     2e+03      18      40 ..     240     262 ..     232     265 .. 0.82
   2 ?   -4.0   0.0       6.6   1.7e+04      12      26 ..     317     331 ..     317     334 .. 0.85
   3 ?   -0.9   0.0      0.75   1.9e+03      10      30 ..     574     594 ..     572     596 .. 0.87
   4 ?    5.3   0.0    0.0084        22       9      25 ..     649     665 ..     648     669 .. 0.92
   5 ?   -0.0   0.0      0.39   9.9e+02      10      26 ..     777     793 ..     775     797 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.78
      HTH_28  18 aArelgisrrtvyrWikryeegG 40 
                 a ++++ ++ +v+r ik+ + +G
  EGE26781.1 240 ALAAYNAGPGRVSRAIKANQDQG 262
                 56789999********9977666 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.6
      HTH_28  12 GhsvreaArelgisr 26 
                 G+s +e+A   g+s 
  EGE26781.1 317 GVSLSEVATVTGLSV 331
                 78999***9999986 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.75
      HTH_28  10 aaGhsvreaArelgisrrtvy 30 
                  aG+s + +A+ +g++  ++ 
  EGE26781.1 574 RAGDSLTSVAATHGLTVGQLA 594
                 579999**********99986 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0084
      HTH_28   9 laaGhsvreaArelgis 25 
                 +++G+s +++Ar+++is
  EGE26781.1 649 VQSGESLTAIARRYNIS 665
                 689*************8 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.39
      HTH_28  10 aaGhsvreaArelgisr 26 
                 +aG+   ++Ar++gis 
  EGE26781.1 777 KAGDGLIALARRYGIST 793
                 567777899******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 5623.74
//
Query:       EGE26782.1  [L=54]
Description: hypothetical protein EA1_04832 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 435.60
//
Query:       EGE26783.1  [L=185]
Description: hypothetical protein EA1_04837 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-07   30.1   0.1      8e-07   29.4   0.1    1.3  1  DUF4440          Domain of unknown function (DUF4440)
    4.7e-05   24.0   0.0    7.8e-05   23.3   0.0    1.3  1  SnoaL_2          SnoaL-like domain
  ------ inclusion threshold ------
      0.022   15.4   0.1      0.037   14.7   0.1    1.3  1  Lumazine_bd_2    Putative lumazine-binding
      0.039   14.4   0.4      0.062   13.7   0.4    1.4  1  Phage_holin_3_1  Phage holin family (Lysis protein S)
       0.05   13.7   0.0      0.083   12.9   0.0    1.5  1  ROS_MUCR         ROS/MUCR transcriptional regulator protein
       0.11   12.3   0.0       0.16   11.7   0.0    1.3  1  SnoaL            SnoaL-like polyketide cyclase


Domain annotation for each model (and alignments):
>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   2.7e-10     8e-07       8     101 ..      71     169 ..      64     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.7e-10
                 HHHHHHCT-HHHHHHCEEEEEEEE-TT.S-E..EEHHHHHHHHHCCHCEEEEEEEEE..EEEEEETTEE.EEEEEEEEEECCTTEEEEEEEEEEEEEEE CS
     DUF4440   8 leeafvagdaealaallapdavlvgps.gtv..ldkeellealeagfaagrslelte..eevrvlgdlA.vvtgrytfegrgdgepvegrgrftsvwrk 100
                 + +a +a +++++ +l+++da++  ++ g++  ldke++l+ l++ +a  +++++++  ++v v+g+ A +++++ t ++++dg+pv+ ++++ +++ +
  EGE26783.1  71 MSSAANAQNIAQISRLIDDDAIISLSRgGKTtsLDKEGYLQLLQKSWATSSDYRYRInvADVVVTGNQArAQIVT-TETWTQDGKPVTIKTASRATFSQ 168
                 66899****************99944434442359**********9999888877666699******99555555.667888*****977777776666 PP

                 E CS
     DUF4440 101 e 101
                  
  EGE26783.1 169 V 169
                 5 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.6e-08   7.8e-05       6      94 ..      73     166 ..      68     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.6e-08
                 HHHHTTCHHHHHHTEEEEEEEEET.TSE..EESHHHHHHHHHHHHHHEEEEEEEEEEE..EEETTEEEEEEEEEEEEETTSSEEEEEEEEEEEE CS
     SnoaL_2   6 aalnagdldalaalfapdvvwedp.gge..lrGreairaffralfaafpdlrfeihdv..vadgdrvavewtvtgtipatgrgvtvrgvdvfrv 94 
                  a na++++ + +l ++d+      gg+     +e++ + +++ +a+++d+r++i     v+ g+++ +++  t t   +g++vt++ ++  ++
  EGE26783.1  73 SAANAQNIAQISRLIDDDAIISLSrGGKttSLDKEGYLQLLQKSWATSSDYRYRINVAdvVVTGNQARAQIVTTETWTQDGKPVTIKTASRATF 166
                 699*******************9998885444777***********99999999654444*****99999877777789999999988887776 PP

>> Lumazine_bd_2  Putative lumazine-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   1.2e-05     0.037      16      88 ..      74     145 ..      60     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.2e-05
                    HHHHT-HHHHHHHEEEEEEEEEECTCEEEEEECHHHHHHHHHHH..-TT-EE-.EEEEEEEEETTEEEEEEEE CS
  Lumazine_bd_2  16 glaegdaaklrkafhpdaalvgvtkgelremsleellalvaerespakegdprekeIesidvagdvAmvkvel 88 
                    ++   + a++++++ +da++   ++g++++ + e +l+l +++ +  ++  +++ ++  + v+g++A +++ +
     EGE26783.1  74 AANAQNIAQISRLIDDDAIISLSRGGKTTSLDKEGYLQLLQKSWA-TSSDYRYRINVADVVVTGNQARAQIVT 145
                    556678899*******************************99976.5666678889999********999765 PP

>> Phage_holin_3_1  Phage holin family (Lysis protein S)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.4   2.1e-05     0.062      41      90 ..       4      53 ..       1      62 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
  Phage_holin_3_1 41 swkkvlleallCgllalavrsllellglpaslavviggliGflGvekire 90
                     s + vl  a+  ++l+ ++rs+++l g +      ig +iG +Gv+ + +
       EGE26783.1  4 STRSVLRKAVAASMLTAVIRSAIQLTGRSFGKGASIGLFIGMIGVQSLIT 53
                     678888999************************************98755 PP

>> ROS_MUCR  ROS/MUCR transcriptional regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.8e-05     0.083      47      98 ..      66     127 ..       7     135 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
    ROS_MUCR  47 a......eeeekepavpikksvtpdaiicledGkklksL..krhLa..sahgltpeeYrakw 98 
                 +      ++++ +  ++i++ + +daii+l  G k  sL  + +L+  ++   t ++Yr + 
  EGE26783.1  66 RyassmsSAANAQNIAQISRLIDDDAIISLSRGGKTTSLdkEGYLQllQKSWATSSDYRYRI 127
                 02233335567788999**********************64456642256667888888775 PP

>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.5e-05      0.16       7      78 ..      71     146 ..      65     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.5e-05
                 HHHHHHTT-HHHHHGTEEEEEEETCCTT..TCECHHHHHHHHHHHHHHHCTTCEE..EEEEEEEETTEEEEEEEEE CS
       SnoaL   7 yeevwnsgdldaldelvaedvvdhnpee..eparGlegfrafveelfkafPDlkv..evedlvaegdkvaarltft 78 
                 ++ ++n ++++++ +l+++d +   ++   + +  +eg+ + +++ +++ +D +   +v d+v+ g ++ a+++ t
  EGE26783.1  71 MSSAANAQNIAQISRLIDDDAIISLSRGgkTTSLDKEGYLQLLQKSWATSSDYRYriNVADVVVTGNQARAQIVTT 146
                 66788******************988874455555679***************9977999******9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1483.15
//
Query:       EGE26784.1  [L=330]
Description: hypothetical protein EA1_04842 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-20   72.8   0.2    3.7e-20   72.4   0.2    1.1  1  DUF21     Cyclin M transmembrane N-terminal domain
    4.8e-09   36.5   0.1     0.0002   21.7   0.0    2.6  2  CBS       CBS domain


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.2   4.1e-24   3.7e-20      25     174 ..       3     151 ..       1     153 [. 0.94

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 4.1e-24
       DUF21  25 rlrleelaekgkkkakrllkllknp.erlLstlligntlvnillsalatalfvellaegalavviatvivtllilvfgEilPkslalkyaekialalap 122
                 ++ +++l e++ k+a+ l+++  ++ e+ +s++l +nt++ +l s+ a+a +v ++  g++++ ++  ++tl+il+ +Ei+Pk++++ y  ++a+ +a+
  EGE26784.1   3 PSYIDTLEEDNPKGAALLKSVKVDHiEKSISAILTLNTVAHTLGSLGAGAQAVIVF--GNAWFGVFSGVMTLIILIGTEIIPKTIGTVYWRRFAMPVAY 99 
                 6778999*************986666*************************99999..579999999******************************** PP

       DUF21 123 plrvlmvllyPlvwllskllnlilesesepavseeelkklveeseeegviee 174
                  +r + v l P++w+ +k+++ ++ +++e  +++ e  +l +++e+ g ++e
  EGE26784.1 100 YVRTINVALLPIIWVTEKISRMLTRGNQEIGFNRHEFLALANQGESLGQMSE 151
                 ************************99*******************9999877 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     2e-05      0.18       1      54 [.     168     224 ..     164     227 .. 0.85
   2 !   21.7   0.0   2.3e-08    0.0002       6      56 ..     238     288 ..     234     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
                 HHHHSBSSCE..EEETTSBHHHHHHHHHHHT..SSEEEEEETTT.BEEEEEEHHHHHHH CS
         CBS   1 Vgdimtrdvv..tvppdttleealelmrekg..vsrlPVVdedg.klvGivtlrDllra 54 
                 V+di t++ v   +++++t+++++  +   +  +sr+P+ ded  +  G + ++Dll a
  EGE26784.1 168 VEDILTPRSVvsAFDENMTVGDVFASY--PKlpFSRFPIFDEDLdNATGFILKSDLLIA 224
                 67887776666799*************..99999******544468**********976 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 2.3e-08
                 BSSCEEEETTSBHHHHHHHHHHHTSSEEEE.EETTTBEEEEEEHHHHHHHHH CS
         CBS   6 trdvvtvppdttleealelmrekgvsrlPV.VdedgklvGivtlrDllrall 56 
                 +rd+ +v   + l ++l+lm ++ v+ +   V e g++ G+v+l+D+l+ ll
  EGE26784.1 238 RRDINFVFAKMKLFDLLDLMLKEQVH-IALaVGEFGEVKGLVSLEDVLETLL 288
                 566667888899*******9999995.544479***************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2799.48
//
Query:       EGE26785.1  [L=75]
Description: hypothetical protein EA1_04847 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.041   13.3   0.2      0.044   13.2   0.2    1.2  1  ICEA      ICEA Protein


Domain annotation for each model (and alignments):
>> ICEA  ICEA Protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   2.5e-06     0.044     107     147 ..       3      43 ..       1      66 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-06
        ICEA 107 entkieidhkdgrkndlrvsniktqkledfqplskaandvk 147
                 +n   ei+hk+   +d+++ +i+  +l    p s+aan v 
  EGE26785.1   3 NNVASEIEHKNDTTKDKQIKKINNARLVGVPPSSNAANAVE 43 
                 57888*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 594.34
//
Query:       EGE26786.1  [L=111]
Description: protein translocase subunit YajC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-25   89.0   0.5    1.7e-25   88.7   0.5    1.1  1  YajC      Preprotein translocase subunit
     0.0023   17.9   0.5     0.0031   17.4   0.5    1.2  1  MreC      rod shape-determining protein MreC
     0.0027   17.9   0.6     0.0042   17.4   0.6    1.3  1  MlaD      MlaD protein
     0.0092   16.3   0.0      0.015   15.6   0.0    1.4  1  Orf78     Orf78 (ac78)
  ------ inclusion threshold ------
      0.089   13.2   0.1       0.14   12.6   0.1    1.3  1  DUF2969   Protein of unknown function (DUF2969)


Domain annotation for each model (and alignments):
>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.5   4.6e-29   1.7e-25       2      79 ..      25     100 ..      24     101 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 4.6e-29
        YajC   2 sllplvlifvifyfllirpqqkkqkehkemlasLkkGdeVvtigGivGkvvkvdddevtveigesagvkikversaia 79 
                 +ll+ v++f+ifyfl+irpq k+ k+hk+m++ L++G+eVv +gG++G+++kv+ d+ +++++   ++++k++r+++ 
  EGE26786.1  25 NLLIPVAFFAIFYFLIIRPQSKRNKQHKAMVDGLTVGNEVVFAGGLIGRIKKVEGDYAVITLNH--STEVKIQRASVV 100
                 577899************************************************8899999965..59******9985 PP

>> MreC  rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.5   8.6e-07    0.0031      20      59 ..      55      94 ..      50     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.6e-07
                GGT--TT-EEEETTEEEEEEEEE-SS-EEEEETTSCCE.E CS
        MreC 20 kdgvkkgmpVvsgkglVGkVtevgknssrVllitdssssv 59
                 dg+ +g  Vv + gl+G++++v+ +++ ++l  ++++++
  EGE26786.1 55 VDGLTVGNEVVFAGGLIGRIKKVEGDYAVITLNHSTEVKI 94
                589999999**9989**************99977776654 PP

>> MlaD  MlaD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.6   1.2e-06    0.0042      12      70 ..      55     107 ..      51     110 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
        MlaD  12 angLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsraqvstggl 70 
                 + gL+vg++V ++G  +Gr++++    +++ + +t++   ++e++i + s ++v  +g+
  EGE26786.1  55 VDGLTVGNEVVFAGGLIGRIKKV----EGDYAVITLN--HSTEVKIQRASVVMVLPTGT 107
                 789********************....5565444444..44888888888888776666 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     4e-06     0.015      69      99 ..      21      51 ..      10      55 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4e-06
       Orf78 69 sllavvcvlvllyviyYfvilrerqkssvke 99
                sll+ + + v +++i+Yf+i+r ++k+++++
  EGE26786.1 21 SLLMNLLIPVAFFAIFYFLIIRPQSKRNKQH 51
                57788899999************99988754 PP

>> DUF2969  Protein of unknown function (DUF2969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.9e-05      0.14       2      49 ..      45      88 ..      45     104 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.9e-05
     DUF2969  2 SkknKkieveieetkvneqpvtelligkktIGeieeedekfeavlsek 49
                Sk+nK+ +  ++  +v    ++e++ +   IG+i+++++ +++++ + 
  EGE26786.1 45 SKRNKQHKAMVDGLTV----GNEVVFAGGLIGRIKKVEGDYAVITLNH 88
                8899999999988888....********************98875443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 900.62
//
Query:       EGE26787.1  [L=625]
Description: preprotein translocase subunit SecD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-41  141.1   5.0    2.6e-33  114.6   0.0    4.1  4  SecD-TM1        SecD export protein N-terminal TM region
    3.9e-21   75.3  12.7    8.5e-21   74.2  12.7    1.5  1  SecD_SecF       Protein export membrane protein
    8.4e-09   34.8  14.9    2.1e-08   33.5  14.9    1.6  1  MMPL            MMPL family
    1.2e-06   26.5  13.1    2.1e-06   25.8  13.1    1.2  1  ACR_tran        AcrB/AcrD/AcrF family
    2.6e-06   26.7   0.0    7.1e-06   25.3   0.0    1.8  1  Sec_GG          SecD/SecF GG Motif
  ------ inclusion threshold ------
      0.031   14.5   1.0        2.7    8.3   0.0    2.8  3  RimM            RimM N-terminal domain
       0.88    9.4   9.4        1.5    8.6   9.4    1.3  1  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ


Domain annotation for each model (and alignments):
>> SecD-TM1  SecD export protein N-terminal TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0     1e-36   2.6e-33       3     103 .]       2     102 ..       1     102 [. 0.99
   2 !   23.8   0.1   1.8e-08   4.6e-05      45      99 ..     145     199 ..     129     202 .. 0.84
   3 ?   -1.1   0.1         1   2.7e+03      52      94 ..     235     278 ..     220     284 .. 0.72
   4 ?    1.8   0.0      0.13   3.2e+02      58     101 ..     374     417 ..     338     418 .. 0.71

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 1e-36
    SecD-TM1   3 ryplWkyllilvvlligllyalPnlygedpavqisaakatlkvdeatlskveqaLkeagievksielenesllvrfestdqqlkAkdvlekaLgddyvv 101
                 +yp+Wky+li+vvl+i+ +yalPnly+++pavqi++a+a++++++++l+++e  L++ag+++++  +en+s l+r++++++qlkA++vl++ Lg++yvv
  EGE26787.1   2 HYPAWKYILIVVVLFISGIYALPNLYPDEPAVQITGASAGTQLTQDVLTQAEGLLTQAGLNHHNGRFENNSALLRLSNAEDQLKAQEVLRRDLGEQYVV 100
                 8************************************************************************************************** PP

    SecD-TM1 102 Al 103
                 Al
  EGE26787.1 101 AL 102
                 *8 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.8e-08
    SecD-TM1  45 vdeatlskveqaLkeagievksielenesllvrfestdqqlkAkdvlekaLgddy 99 
                   ++  ++v+++L+ ++i+v+s+  ++++++++f +td++ +A+ +l++++g d+
  EGE26787.1 145 RLATASQDVRRTLRGEQIPVQSLRITDNGMVLTFINTDDRGRAQSILQNQVGADF 199
                 34455679*******************************************9987 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1
    SecD-TM1  52 kveqaLkeagievksielen.esllvrfestdqqlkAkdvleka 94 
                 ++++ ++e g++   ++ ++ ++++v +   ++ ++Ak vl ++
  EGE26787.1 235 TLRNRINELGVAEALVQSQGtNRIVVELPGVQDTAEAKRVLGRT 278
                 55666666666666665554155999999999999999999876 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.13
    SecD-TM1  58 keagievksielenesllvrfestdqqlkAkdvlekaLgddyvv 101
                 +++++++++ + ++e + vr   t++++  + ++++ Lg+++v+
  EGE26787.1 374 NKQKVSFQEDSSTGELVEVRTPYTESRIINRATIQAVLGSSFVI 417
                 35556666666666669**********************99987 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2  12.7   3.3e-24   8.5e-21      16     186 ..     445     612 ..     437     615 .. 0.89

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 3.3e-24
                 EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH CS
   SecD_SecF  16 isvetvgpsvskelaekavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrk 114
                 ++  t+gps++++ + k++++  +  +l+++ + +   + +++ a ial++ vii+v+++s+lg  ++l  +a++   iG  v+ +v++f+r+re+l +
  EGE26787.1 445 VEERTIGPSLGQDNIDKGLFSTQVGYLLVFLWMIVF-YRAFGVIANIALAFNVIIMVAIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREELAN 542
                 56789*********************9999997765.5679*******************************************************999 PP

                 --SS-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHH CS
   SecD_SecF 115 kkratlkeiinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplllll 186
                  +ra+   +i  +    ++    + +ttll++++l+ +g + +k+fa++l +G+i+  +++i++  +++  +
  EGE26787.1 543 GTRAK--SAIVAGFDRAFSSIFDANITTLLIAFILFAIGTGPIKGFAITLAIGIISSLFTAILVTRAMIQIW 612
                 66655..555667777777666699999***************************99999999998877655 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5  14.9   8.2e-12   2.1e-08     162     297 ..     479     607 ..     459     621 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 8.2e-12
        MMPL 162 ivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgll.vvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltva 259
                 + yr++         v+  +++a+ +++++a +++l+ s + +g++ +vl+i+ ++D ++l++ R+reela+g ++++a+   + ++ + ++ a +t  
  EGE26787.1 479 VFYRAF--------GVIANIALAFNVIIMVAIMSILGSSLTLPGIAgIVLTIGMAVDANVLIFERIREELANGTRAKSAIVAGFDRAFSSIFDANITTL 569
                 555543........47888999999999*****************626788************************************************ PP

        MMPL 260 iamlgLvvarlpvlaqvGvaialGvlvdvlivlTllPA 297
                 +  + L ++  + ++++++++a+G++ +++ ++ ++ A
  EGE26787.1 570 LIAFILFAIGTGPIKGFAITLAIGIISSLFTAILVTRA 607
                 9999*********************9999988766644 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8  13.1   8.1e-10   2.1e-06     338     486 ..     467     609 ..     456     619 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 8.1e-10
                 HHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
    ACR_tran 338 leaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalv 436
                  ++ +Lv+l +++F + +   +i  ia+   +++ +a++++lg sl l  + g+vl iG+ vD  + + E i ++l++ g+  + a+ ++     ++ +
  EGE26787.1 467 QVGYLLVFLWMIVFYRAF--GVIANIALAFNVIIMVAIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREELAN-GTRAKSAIVAGFDRAFSS-I 561
                 57899**********988..689999999999999*******************************************.999999999999987555.5 PP

                 HHHHH..HHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH CS
    ACR_tran 437 aialv..llavflPilflgGveGklfrqfaltivlaillsvlvaltltPalc 486
                 + a +  ll++f+  lf  G +G + + fa+t+++ i+ s++ a+ +t a+ 
  EGE26787.1 562 FDANIttLLIAFI--LFAIG-TGPI-KGFAITLAIGIISSLFTAILVTRAMI 609
                 5444401444444..33333.5665.899**************999987775 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.8e-09   7.1e-06       4      27 ..     116     139 ..     115     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.8e-09
                 HHC--EE-TTTS-EEEEEEEE-TT CS
      Sec_GG   4 ftkGlNLGlDFtGGthielqfdqp 27 
                 +  +++LGlD++GG++++l++d++
  EGE26787.1 116 GAAPMKLGLDLRGGVRFVLEVDMA 139
                 5679******************97 PP

>> RimM  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.6   6.7e+03      45      72 ..      61      88 ..      47      94 .. 0.75
   2 ?    8.3   0.0    0.0011       2.7      11      73 ..     126     190 ..     125     198 .. 0.79
   3 ?    3.7   0.0     0.028        71      40      75 ..     238     276 ..     219     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.6
                E-EEEEEEETTEEEEEETT--SHHHHHT CS
        RimM 45 ltvesvrvhkkgvivklegvddrdaAea 72
                l  +++r  +++ +++l++ +d  +A++
  EGE26787.1 61 LNHHNGRFENNSALLRLSNAEDQLKAQE 88
                5556777788999999999888877776 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0011
                 TTTEEEEEE-SSSGGGGGGSSSEEEE...ETTEEEEE-EEEEEEETTEEEEEETT--SHHHHHTT CS
        RimM  11 lkGevkVkpftdfpealfkygrvlle..akkgetreltvesvrvhkkgvivklegvddrdaAeal 73 
                 l+G v+  +  d + al +      +  ++  + +++ v+s r++ +g ++++ + ddr  A+++
  EGE26787.1 126 LRGGVRFVLEVDMAKALEQRLATASQdvRRTLRGEQIPVQSLRITDNGMVLTFINTDDRGRAQSI 190
                 68888888888888888888888888663333345699**********************99987 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.028
                 TEEEEE-EEEEEEE...TTEEEEEETT--SHHHHHTTTT CS
        RimM  40 getreltvesvrvh...kkgvivklegvddrdaAealkg 75 
                 ++++el v+++ v+    ++++v+l gv+d  +A+++ g
  EGE26787.1 238 NRINELGVAEALVQsqgTNRIVVELPGVQDTAEAKRVLG 276
                 4556678888887777677***************98766 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   9.4   0.00059       1.5       9     131 ..     485     607 ..     477     623 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00059
                     HHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHH.CCHHCHHHHHHHHTTTCHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHC CS
  Sterol-sensing   9 glagviivllsvasslgllaylgltltliilevlPflvlavgvd.nifvlvkavqrtsrsldeseriaealgevgpsilltsltellalllgalt 102
                     g+ + i +++ v+  + ++++lg +ltl  +     l + + vd n++++ +  +++ + ++ ++ i  ++ ++  si+   +t ll+ ++ +++
      EGE26787.1 485 GVIANIALAFNVIIMVAIMSILGSSLTLPGI-AGIVLTIGMAVDaNVLIFERIREELANGTRAKSAIVAGFDRAFSSIFDANITTLLIAFILFAI 578
                     5566667777889999999999999998887.3344555666675777777777777888888*************************99999** PP

                     CHHHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  Sterol-sensing 103 dvpavqeFclfaavavlvdFllqitfFva 131
                         ++ F++  a++++++ +  i++  a
      EGE26787.1 579 GTGPIKGFAITLAIGIISSLFTAILVTRA 607
                     *****************998888776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4762.54
//
Query:       EGE26788.1  [L=378]
Description: preprotein translocase subunit SecF [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-59  199.0  11.8    7.5e-59  198.3  11.8    1.3  1  SecD_SecF       Protein export membrane protein
      9e-09   34.5   0.0    2.2e-08   33.3   0.0    1.7  1  Sec_GG          SecD/SecF GG Motif
  ------ inclusion threshold ------
       0.17   12.1   1.7          3    8.1   0.0    2.9  3  DUF5056         Domain of unknown function (DUF5056)


Domain annotation for each model (and alignments):
>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.3  11.8   1.3e-62   7.5e-59      14     186 ..     174     346 ..     164     349 .. 0.97

  Alignments for each domain:
  == domain 1  score: 198.3 bits;  conditional E-value: 1.3e-62
                 EEEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHH CS
   SecD_SecF  14 ekisvetvgpsvskelaekavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenl 112
                 ++ s++ +g+++++e+  +++la+ +al ++liyva rF+ ++al+a++al+hDvii+vg+++++g ++dl+++aa+L +iGYSvndt+vv+dr+ren+
  EGE26788.1 174 TIDSISIIGSQLGNEIYLNSLLAMSVALGMMLIYVATRFQFKLALGAVLALFHDVIIVVGIFAIMGWPFDLTVLAAVLALIGYSVNDTIVVYDRIRENF 272
                 567899********************************************************************************************* PP

                 HH--SS-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHH CS
   SecD_SecF 113 rkkkratlkeiinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplllll 186
                 r+ +  t +++++lsl++tL rti+t+ t+++vvva+l+lggd l  f++al++Gli+gtyssi++as + l++
  EGE26788.1 273 RRVRGLTPRQVLDLSLTETLRRTIMTVGTVFVVVVAMLFLGGDGLYWFSVALFIGLIAGTYSSIYVASSIPLMM 346
                 *********************************************************************98887 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   3.7e-12   2.2e-08       1      28 []      89     116 ..      89     116 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.7e-12
                 .HHHHC--EE-TTTS-EEEEEEEE-TTS CS
      Sec_GG   1 islftkGlNLGlDFtGGthielqfdqpv 28 
                 i++++kGlN+GlDFtGG+   + ++qpv
  EGE26788.1  89 IAIIVKGLNFGLDFTGGVSANVAYEQPV 116
                 689***********************98 PP

>> DUF5056  Domain of unknown function (DUF5056)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       2.6   1.5e+04      39      50 ..      81      92 ..      74     111 .. 0.56
   2 ?    8.1   0.0    0.0005         3      14      38 ..     123     147 ..     116     150 .. 0.87
   3 ?    2.0   0.2      0.04   2.4e+02      40      61 ..     299     320 ..     277     345 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.6
     DUF5056 39 iwtavcavlavv 50
                ++++++ ++a++
  EGE26788.1 81 VLSILIGLIAII 92
                344444444444 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0005
     DUF5056  14 qeiaDnGFsrrVmrrlPerskrlar 38 
                 + +aDnGF + V++ l +r++ l r
  EGE26788.1 123 KALADNGFNDAVVQYLGTRQELLVR 147
                 6789**************9998877 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.04
     DUF5056  40 wtavcavlavvLFvvldGlell 61 
                   +v +v+ ++LF+  dGl   
  EGE26788.1 299 VGTVFVVVVAMLFLGGDGLYWF 320
                 3334455556799999998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2785.23
//
Query:       EGE26789.1  [L=386]
Description: D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-47  159.7   1.1    1.3e-46  159.0   0.6    1.6  1  Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
  ------ inclusion threshold ------
      0.033   12.9   0.1      0.033   12.9   0.1    2.9  3  Peptidase_S13  D-Ala-D-Ala carboxypeptidase 3 (S13) family


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   0.6   1.4e-50   1.3e-46       8     240 ..     134     366 ..     127     367 .. 0.88

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 1.4e-50
                    -.--SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCSGTTSSTTS-TTT-EEEHHHHHHHHHCC CS
  Peptidase_S11   8 pleiaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgnnkevsniflkkgskvsvkdLlegllvs 103
                    p++ ++ + ++ d++ Gk +y knad +++iAS++K+mTa+++l+a     l++ + +t  ++       k++s   lk+g++++++++   +l++
     EGE26789.1 134 PISTRSAAVLVYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDAE----LDMREEITLIASDLIGA--KQAS-TRLKAGDRMTRSEFTLMMLMR 222
                    567888999999**********************************9....77777777543333222..2355.55779**************** PP

                    --HHHHHHHHHHHHSSHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHH...HH.HHHHHHGGGESEEEETT....ECTEE CS
  Peptidase_S11 104 sgNdAavalAekiaGsekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakall...kd.lpeelkitkeksltfng....ikkln 191
                    s+N Aa alA  ++G+++aF+ +Mn+ka +lG+  tkf ++ GLd  n +ssA dl i+ ka+    ++ ++ +++++ ++ + ++     +  ++
     EGE26789.1 223 SENPAAKALARTYPGGYDAFIAAMNQKAYDLGMYQTKFSDSSGLDPRN-MSSANDLLIMMKAVNsspRYhSIRNFSTAPHYDFYIANygsgDRIYK 317
                    *********************************************999.**********9987522256688999999999998874457778889 PP

                    EESSTGGGGTTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES CS
  Peptidase_S11 192 yknknkllyrktlnvdglktGytkkAgeclvatavenqmrlisVvlnak 240
                     +n+n+l+ +    +   ktGy  +Ag++ v+ + +n+ + i V l+a+
     EGE26789.1 318 GNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLGAS 366
                    99*********************************************97 PP

>> Peptidase_S13  D-Ala-D-Ala carboxypeptidase 3 (S13) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   3.5      0.37   3.3e+03     169     233 ..      51     116 ..      21     127 .. 0.63
   2 ?   12.9   0.1   3.6e-06     0.033      15      56 ..     136     177 ..     132     192 .. 0.88
   3 ?    5.1   0.0   0.00088       7.9     281     361 ..     219     291 ..     193     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.37
                    B-EEEECTTTTTCEEEEEEEEESTTSCCEEEEEEE.CTSSEEEEEEEEETTSS-EEEEEE-SSHHH CS
  Peptidase_S13 169 taavtvsakiaiaalknvkvetaaeaekkkliers.fgtntlkvtGslpedaeplklslavqdpaa 233
                     + v v ++ ++++  nv v+   +a+++++++++ + + +l+++  + +++++++ + +    a+
     EGE26789.1  51 SQSVYVEPTAQVTTTTNVSVQAVPQAPQEHVVSQEgYAQTQLNIQPQVISSTKTQTTAYTTTSNAQ 116
                    455667777777777777776666666665555541567778887777776666666555544444 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.6e-06
                    TTSEEEEEEEETTTTEEEEEESTTSEB--GGGHHHHHHHHHH CS
  Peptidase_S13  15 egavagvvvqdaetgkelydhqgdtpllPAStqKllTAaaAl 56 
                    ++  a+v+v d+++gk +y +++d++   AS  K++TA+  l
     EGE26789.1 136 STRSAAVLVYDLQDGKLIYGKNADVQRSIASISKVMTAMVIL 177
                    677899********************************9766 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.00088
                    HHHHT-HHHHHHHHHHHHHHHCS-BSHHHHHHHHHHHHHHTT--CTTSB-S-SSS-STT-BBEHHHHHHHHHHHHCTCCHH CS
  Peptidase_S13 281 mmkkSdNliAesllrevakeikrpgsfeagldavrerLskagidtanlvLeDgSGLSrknlvtaktlaqlLeaiadqpalq 361
                    m+ +S+N  A++l r        pg ++a ++a++++   + + + ++   D+SGL   n  +a+ l  +++a+ ++p  +
     EGE26789.1 219 MLMRSENPAAKALART------YPGGYDAFIAAMNQKA--YDLGMYQTKFSDSSGLDPRNMSSANDLLIMMKAVNSSPRYH 291
                    6677777777777664......4677777777777776..55667788899*********************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2827.50
//
Query:       EGE26790.1  [L=464]
Description: Na+/H+ antiporter NhaC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-38  133.3  42.6    6.6e-38  130.7  20.4    3.0  3  Na_H_antiporter  Na+/H+ antiporter family


Domain annotation for each model (and alignments):
>> Na_H_antiporter  Na+/H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   5.9     0.012   2.2e+02     104     212 ..      39      87 ..       8     104 .. 0.66
   2 !   16.6  14.3   1.9e-07    0.0035     195     264 ..     106     175 ..      61     175 .. 0.89
   3 !  130.7  20.4   3.7e-42   6.6e-38       1     302 [.     161     453 ..     161     454 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.012
  Na_H_antiporter 104 alvaivkafivalafqntdvatalvvgalaglivatllelaslseidkllnrGiksmlgaililllAwgiggvlealgvteslvsslakgvvsk 197
                      +                                                           +l++++A+ + g+l++l+ +e+ ++ +  +v s+
       EGE26790.1  39 S-----------------------------------------------------------LLVVIAALLFFGLLNKLK-FEQMQACMIGSVGSA 72 
                      4...........................................................456666666666666666.666666666666666 PP

  Na_H_antiporter 198 gllplilflvallva 212
                      + ++ ++ +++llv+
       EGE26790.1  73 MGAIYLFSFIGLLVS 87 
                      666666666666655 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.9e-07
  Na_H_antiporter 195 vskgllplilflvallvafatGtswgtigIilpiavplaaklgisllalvraveaggtlgdhlsPisdtt 264
                       s++   l  f+++ +v +a G+ + t + ++  +  +a ++g ++  +++av +g+ +gd +sP+sdtt
       EGE26790.1 106 LSAKVFYLSAFILSSVVGIALGSGFTTCATVGVAFLGMATAFGANPAIVAGAVISGALFGDKMSPLSDTT 175
                      5667778899***********************************************************8 PP

  == domain 3  score: 130.7 bits;  conditional E-value: 3.7e-42
  Na_H_antiporter   1 vavfgdkssplsdtvgliagilktdlieeiaalgmlvqsipanvysifallvvglvvl..llrdigamlraeaeareleekeltklpiavliil 92 
                      +a+fgdk+splsdt++++a++  +dl+++i+ + m+++++pa v++++++  + +      l  i  +++++ ++  ++  +l+  p avl+il
       EGE26790.1 161 GALFGDKMSPLSDTTSIAASLVGVDLFDHIK-N-MMYTTVPAWVITAIIFWYLSATNTisDLAGIAILKEQLFSSGLVHGFSLI--PFAVLVIL 250
                      799****************************.4.9******9999987776666655543555555544444444355555555..******99 PP

  Na_H_antiporter  93 tlskmpytgalalvaivkafivalafqntdvatalv.vgalaglivatllelaslseidkllnrG.iksmlgaililllAwgiggvlealgvte 184
                      ++ ++ ++  +      +++i+al+++ t ++ +l  +g+++   ++ + el  l ++ k++ rG ++sm+++ l+++lA+++gg+l+ lg++ 
       EGE26790.1 251 AILRVNAIYTII-----ATIITALMITYTHSSPSLTdLGGWFFAGYTPAEEL-ALGDVAKMVSRGgLQSMFFSQLLVILALSLGGLLQGLGILP 338
                      998665555444.....46666666555555555432455555555555555.5699************************************* PP

  Na_H_antiporter 185 slvsslakgvvskgllplilflvallvafatGtswgtigIilpiavplaaklgisllalvraveaggtlgdhlsPisdttilsstglnadhidh 278
                      +l++++   ++++ + +++  +++l +++  G+++ ++++ +  + p + +lg+++ +l+r++e++gt++++l+P++  + + + +    +  +
       EGE26790.1 339 ALLDGMRHLLTHASRGVAAAAFTSLGINVLVGEQYLSLLLSGNAFLPEYQRLGLHPINLSRTIEDAGTVINPLVPWGVYGGFLAGTF---GMPV 429
                      ***************************************************************************************...9*** PP

  Na_H_antiporter 279 vsytqlpyallvapitailllvfG 302
                      ++y +++++++ + ++++ ++++G
       EGE26790.1 430 IEYVPYAFFCYWCFLLTLFFGITG 453
                      *************88888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3266.34
//
Query:       EGE26791.1  [L=50]
Description: LysR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-14   51.6   0.3    6.7e-14   51.6   0.3    1.0  1  HTH_1     Bacterial regulatory helix-turn-helix protein, lysR
    0.00039   20.2   0.1    0.00044   20.1   0.1    1.0  1  MarR_2    MarR family
     0.0043   17.1   0.0     0.0063   16.6   0.0    1.3  1  HTH_28    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.024   14.5   0.2       0.03   14.2   0.2    1.3  1  MarR      MarR family
      0.045   13.6   0.3      0.053   13.3   0.3    1.1  1  HTH_IclR  IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.3   1.9e-17   6.7e-14       1      43 [.       5      47 ..       5      50 .] 0.94

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.9e-17
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgv 43
                +rqlr+f  +a++ sf++AA eL+l+q+++s  ik++E+  g 
  EGE26791.1  5 FRQLRAFASIARHHSFSKAATELHLTQSSLSGLIKEMEKTAGY 47
                69************************************99885 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.2e-07   0.00044       3      47 ..       3      43 ..       1      45 [. 0.94

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.2e-07
                --HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  3 ltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLva 47
                +t  q+r+ a ++r+     + +  a +l+l++s++s ++k++++
  EGE26791.1  3 ITFRQLRAFASIARHH----SFSKAATELHLTQSSLSGLIKEMEK 43
                7999***********7....9**********************97 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.8e-06    0.0063       3      38 ..       8      43 ..       6      47 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.8e-06
      HTH_28  3 leiikllaaGhsvreaArelgisrrtvyrWikryee 38
                l++   +a++hs + aA el++++++++++ik  e+
  EGE26791.1  8 LRAFASIARHHSFSKAATELHLTQSSLSGLIKEMEK 43
                667777899**********************98876 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   8.4e-06      0.03      18      43 ..      18      43 ..       3      44 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.4e-06
                EEHHHHHHHHTS-HHHHHHHHHHHHH CS
        MarR 18 lsvseLakklgvskstvtrvldrLek 43
                +s s+ a  l++++s+++ +++++ek
  EGE26791.1 18 HSFSKAATELHLTQSSLSGLIKEMEK 43
                7888899******************8 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   1.5e-05     0.053       9      43 ..       8      42 ..       3      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                HCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHH CS
    HTH_IclR  9 LdalaeapqeltlselArrtglpkStvhRlLqtLv 43
                L+a+a+ ++  ++s  A +++l+ S+ ++l++ ++
  EGE26791.1  8 LRAFASIARHHSFSKAATELHLTQSSLSGLIKEME 42
                99****************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 385.02
//
Query:       EGE26792.1  [L=225]
Description: LysR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-32  111.5   0.0    3.8e-32  111.4   0.0    1.0  1  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
       0.02   14.0   0.0       0.73    8.9   0.0    2.9  2  PBP_like        PBP superfamily domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.0   4.2e-36   3.8e-32       4     207 ..      15     217 ..      12     219 .. 0.92

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 4.2e-36
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                      +g++ri++p+ l++  +p+l++ f+++yP++++ l   + ee++  ++  ++D+++  + +++++l+ ++L++  + lv+++dhpLa+ + +++
      EGE26792.1  15 HQGKVRIATPQQLSAFSIPRLIRLFKEAYPDIQVTLIDCSIEEVASHVQMLDADIGLGPDLLHSNDLIQTKLFRSSFGLVVRADHPLADSKVLTW 109
                     58****************************************************************************************9**** PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCT..TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalrea..glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                     +dL + +li+++++  + d++++ l      +  r  ++vn l+++l++v+ GlGi++   +a + ++++ +lv++p+ ep++  e+ l+ +++r
      EGE26792.1 110 QDLSEGDLITVQAP--FADHIREKLTLDicTRLFRSDYQVNFLSTALGMVKEGLGITMTLGYA-KTWVDEQGLVMIPIHEPQIGYEFLLYKHRQR 201
                     **********7755..5555555555552255569**********************999999.8****************************** PP

                     CCHHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflrea 207
                      ++pa++ f +fl +a
      EGE26792.1 202 SQTPAMKSFENFLVKA 217
                     ***********99876 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0   0.00073       6.6     134     178 ..      56      98 ..       3     100 .. 0.88
   2 ?    8.9   0.0   8.2e-05      0.73      56     192 ..      76     214 ..      66     215 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00073
                 HHHHCCHCCETTCCECCCGG-HCCCCCCECTTCE-EEEEEEEECT CS
    PBP_like 134 lavaaaVaagradvgvgieavaeelkgldfvplaeerydlvvrke 178
                  +va+ V+  +ad+g+g++    + ++l  ++l + ++ lvvr++
  EGE26792.1  56 EEVASHVQMLDADIGLGPDLLH-S-NDLIQTKLFRSSFGLVVRAD 98 
                 689****************999.4.79999999999999999876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 8.2e-05
                 EEEEEEEEE-CC-HCHCCCCHCCHHH...S--BGGGC-S-B-EEEEE-TTSHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCET...TCCE CS
    PBP_like  56 ldgievvlvnlarreqglvvakgnpk...kitnwkdladaplrlvnRetGSGtrdlfdellkkegiskssikgyaqearshlavaaaVaagr...advg 148
                 l   +++  +l+r   glvv+++ p+   k+ +w+dl + +l  v+++      d + e+l+     +  +++y  +++  +++  +V+ g       g
  EGE26792.1  76 LHSNDLIQTKLFRSSFGLVVRADHPLadsKVLTWQDLSEGDLITVQAPFA----DHIREKLTLDICTRLFRSDY--QVNFLSTALGMVKEGLgitMTLG 168
                 5566778889999999*******9997778*******9999999987654....44444444433445555555..57777777777777764434566 PP

                 CCCGG-HCCCCCCECTTCE-....EEEEEEEECTCCCSHHHHHHHHHH CS
    PBP_like 149 vgieavaeelkgldfvplae....erydlvvrkealddpevqaflefl 192
                 ++   v+e  +gl  +p++e     ++ l+ ++++ + p++++f +fl
  EGE26792.1 169 YAKTWVDE--QGLVMIPIHEpqigYEFLLYKHRQRSQTPAMKSFENFL 214
                 66666664..47777777776666666677777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1743.49
//
Query:       EGE26793.1  [L=289]
Description: LysR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-23   80.4   0.6    6.8e-23   80.4   0.6    2.1  3  HTH_1           Bacterial regulatory helix-turn-helix protein
    1.8e-22   79.7   0.0    5.5e-22   78.2   0.0    1.7  2  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.011   15.5   0.1      0.028   14.2   0.1    1.7  1  P22_Cro         DNA-binding transcriptional regulator Cro
      0.039   13.9   0.2       0.31   11.0   0.0    2.3  2  Phycobilisome   Phycobilisome protein
       0.04   13.5   0.0      0.097   12.3   0.0    1.6  1  HTH_24          Winged helix-turn-helix DNA-binding
        0.1   12.4   0.3       0.43   10.4   0.0    2.3  3  HTH_10          HTH DNA binding domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.6   2.3e-26   6.8e-23       1      60 []       5      64 ..       5      64 .. 0.97
   2 ?   -3.0   0.1       2.6   7.7e+03      27      39 ..      67      79 ..      67      79 .. 0.80
   3 ?   -3.5   0.0       3.5     1e+04      37      48 ..     135     146 ..     131     154 .. 0.70

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 2.3e-26
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr +++f  v+++gsf++AA+eLg++ +avs+qi++LE+ lgv L++R++r+l+LTeaGe
  EGE26793.1  5 LRGMAVFSSVVRHGSFSGAAKELGITTSAVSQQIRSLENDLGVSLLHRSTRKLSLTEAGE 64
                57799******************************************************7 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
                HHHHHHHHHHHHH CS
       HTH_1 27 qpavsrqikrLEe 39
                ++++++++k+ E+
  EGE26793.1 67 YSSATQMVKAAEQ 79
                6889999998885 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.5
                 HHHHHTS-SEEE CS
       HTH_1  37 LEeelgvpLfeR 48 
                  E++++v L+  
  EGE26793.1 135 IEDRVDVALLLS 146
                 689999998864 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.37   1.1e+03     135     161 ..      30      56 ..      22      63 .. 0.73
   2 !   78.2   0.0   1.8e-25   5.5e-22       2     208 ..      89     287 ..      88     288 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.37
                     EESSHHHHHHHHHTTS-BEEEEGGGHH CS
  LysR_substrate 135 evnsleallalvaaGlGiallprsavr 161
                     +++ ++  ++  ++ lG++ll rs+ +
      EGE26793.1  30 TTSAVSQQIRSLENDLGVSLLHRSTRK 56 
                     566666667777888999999888754 PP

  == domain 2  score: 78.2 bits;  conditional E-value: 1.8e-25
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     ++l+g+Lri+++p la   l p+l++++ ++ +++l++ + d    ld+++++ +D+a+++ ++++       L + + +l+asp++ + ++  v
      EGE26793.1  89 DELSGSLRIATTPELAKAYLLPALSDWLVEHDNLSLNIISRD---NLDMIEDR-VDVALLLSEQAQGI----ALKTVEQMLIASPEY-IKNHGDV 174
                     689************************************999...999999**.******87776655....9**************.9997777 PP

                     .CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEET CS
  LysR_substrate  97 .sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrk 189
                      +  +La +++i   e  +   ++ da +++ +++  ++ +n+ + +l+l+a G Gia   +  +++ l++g++v   lp++ lp  +l++v+ +
      EGE26793.1 175 eNVKALATHTMIICGEKPSESIEFKDANGKQSVRVSSRIITNNHAIALNLAAEGYGIAKTNAVDAKALLESGKVV-KILPNHSLPiLTLSAVTIS 268
                     7**************************************************************************.******************* PP

                     TCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflreal 208
                     +++ + +++  i+ l +++
      EGE26793.1 269 KEQTTVKAQKCIEVLEAHF 287
                     ***************9887 PP

>> P22_Cro  DNA-binding transcriptional regulator Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   9.5e-06     0.028       5      28 ..      14      36 ..      12      41 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.5e-06
                HHHHHSSHHHHHHHHTS-HHHHHH CS
     P22_Cro  5 vikhFGgvekvAkalgvtksAVsq 28
                v++h G+ + +Ak lg+t+sAVsq
  EGE26793.1 14 VVRH-GSFSGAAKELGITTSAVSQ 36
                5665.9999**************9 PP

>> Phycobilisome  Phycobilisome protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.38   1.1e+03      27      51 ..      55      79 ..      31      92 .. 0.69
   2 ?   11.0   0.0    0.0001      0.31      29      69 ..     136     176 ..     123     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.38
                   THHHHHHHHHHHHHTHHHHHHHHHH CS
  Phycobilisome 27 sgnkrldaakalasnaseivkeAva 51
                   ++ + ++a ++l s+a ++vk A +
     EGE26793.1 55 RKLSLTEAGESLYSSATQMVKAAEQ 79
                   4555566677777777777777755 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0001
                    HHHHHHHHHHHHTHHHHHHHHHHHHHHHSGGGGSTTSTTSS CS
  Phycobilisome  29 nkrldaakalasnaseivkeAvaklleenpeltqpggnayt 69 
                    + r+d+a  l+++a+ i+ + v+++l   pe++++ g++ +
     EGE26793.1 136 EDRVDVALLLSEQAQGIALKTVEQMLIASPEYIKNHGDVEN 176
                    789**********************************9754 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.2e-05     0.097      24      44 ..      24      44 ..      20      44 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
      HTH_24 24 AerlglSpstvnrrlkrLeee 44
                A++lg++ s+v+++++ Le++
  EGE26793.1 24 AKELGITTSAVSQQIRSLEND 44
                89*****************86 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00014      0.43      30      50 ..      24      44 ..      16      46 .. 0.90
   2 ?   -3.5   0.0       3.1   9.4e+03      34      44 ..     151     161 ..     148     163 .. 0.78
   3 ?   -3.0   0.0       2.2   6.6e+03      30      39 ..     226     235 ..     219     238 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
      HTH_10 30 AkelGIskstlsehLrkaesk 50
                AkelGI+ s++s+ +r+ e+ 
  EGE26793.1 24 AKELGITTSAVSQQIRSLEND 44
                9***************99886 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.1
      HTH_10  34 GIskstlsehL 44 
                 GI+  t+++ L
  EGE26793.1 151 GIALKTVEQML 161
                 88888888877 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.2
      HTH_10  30 AkelGIskst 39 
                 A+  GI+k++
  EGE26793.1 226 AEGYGIAKTN 235
                 6778999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2305.91
//
Query:       EGE26794.1  [L=748]
Description: DNA polymerase III gamma and tau subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-42  145.6   0.0    4.9e-42  143.5   0.0    2.0  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
    4.5e-29  101.2   1.9    1.8e-28   99.3   1.9    2.1  1  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do
    1.8e-10   41.4   0.0    5.7e-10   39.7   0.0    1.9  1  AAA              ATPase family associated with various cellul
    5.8e-08   32.6   0.6    9.5e-07   28.7   0.0    2.6  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    2.2e-05   25.0   0.3     0.0019   18.8   0.0    3.2  3  AAA_18           AAA domain
    0.00032   20.5   0.0     0.0015   18.3   0.0    2.2  1  AAA_30           AAA domain
    0.00037   20.5   0.6     0.0094   16.0   0.1    3.1  2  AAA_5            AAA domain (dynein-related subfamily)
    0.00045   20.3   0.0     0.0016   18.5   0.0    1.9  1  AAA_14           AAA domain
     0.0025   17.1   0.0        1.4    8.0   0.0    2.3  2  TIP49            TIP49 P-loop domain
     0.0036   17.7   2.1       0.01   16.2   0.0    2.8  2  AAA_16           AAA ATPase domain
      0.004   17.4   0.7      0.027   14.7   0.1    2.7  2  AAA_22           AAA domain
     0.0058   16.6   0.0      0.011   15.6   0.0    1.5  1  Rad17            Rad17 P-loop domain
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.026   13.9   0.0    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.015   15.6   2.5        2.9    8.2   0.0    3.5  4  AAA_19           AAA domain
      0.016   15.2   0.0        4.6    7.2   0.0    2.6  2  ResIII           Type III restriction enzyme, res subunit
      0.025   14.6   0.1      0.067   13.2   0.1    1.7  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.046   13.8   0.1        3.4    7.8   0.0    3.1  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.052   13.7   0.2       0.17   12.0   0.1    2.0  2  SKI              Shikimate kinase
      0.077   12.9   0.0       0.22   11.4   0.0    1.8  1  RsgA_GTPase      RsgA GTPase
      0.086   10.7   0.0       0.15   10.0   0.0    1.2  1  Herpes_Helicase  Helicase
      0.091   12.5   0.0       0.21   11.3   0.0    1.5  1  AAA_24           AAA domain
       0.24   11.6   0.4       0.58   10.4   0.4    1.7  1  AAA_28           AAA domain


Domain annotation for each model (and alignments):
>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   0.0     6e-45   4.9e-42       1     162 [.      22     180 ..      22     181 .. 0.98
   2 ?   -1.0   0.0       1.6   1.3e+03       3      33 ..     249     279 ..     247     341 .. 0.72

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 6e-45
  DNA_pol3_delta2   1 gqeealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqireliee 94 
                      gq+++ + ls+a+ +grl+hayLf+G++g+gk ++a  lak l+ce + +++pcg c++c  i+qg + D+i i+  ++    k+++ rel e+
       EGE26794.1  22 GQSHVAQALSNAIDTGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGMTSQPCGVCDTCISIDQGRFLDLIEIDAASR---TKVEDTRELLEN 112
                      688999*********************************************************************9999...9*********** PP

  DNA_pol3_delta2  95 lsrkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                      +   p+++++k+++i+++ ++++++ NalLktlEEP++++ f++ t+d++kl  ti SRc ++ ++pl
       EGE26794.1 113 VPYPPVQGRYKVYLIDEVHMLSTHSFNALLKTLEEPPDYVKFVFATTDPQKLPITIISRCLQFVLRPL 180
                      **************************************************************999986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
  DNA_pol3_delta2   3 eealkilskalksgrlahayLfeGdegigkk 33 
                      +++l+i++++++ +r+a + L++  ++   +
       EGE26794.1 249 TDVLEIIETIYHDDRMAISQLITNMRDKMVD 279
                      5678899999999999999998876544333 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   1.9   2.2e-31   1.8e-28       2     134 ..     235     365 ..     234     371 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 2.2e-31
  DNA_pol3_gamma3   2 saaqVrdmLGladrarlldlleallegdaaaalaelreqyaaGadpvvvlrdLlellhqltllkvlpeaaedlslpeeererlkelaeklsleq 95 
                      ++++V +mLGl++r+++l+++e +++ d  a+ + ++++ ++++d+ +++++L++ +hq++l++vlp+     ++++e++ ++k l+ ++s + 
       EGE26794.1 235 QTDTVLSMLGLVNRTDVLEIIETIYHDDRMAISQLITNMRDKMVDATAIFDELIDCIHQMALMQVLPDIPL--DMNDEQAHQIKRLSSAISSDI 326
                      6789***************************************************************7555..58******************* PP

  DNA_pol3_gamma3  96 LqrlWqlllkgieevknapdpraaaEmvLlRlaaaaslp 134
                      Lq+++++l+k+++ ++ a++p++a+Em +lRl+a++ l 
       EGE26794.1 327 LQLYYEILIKSRDGIRLASTPMQALEMGILRLLAFRPLA 365
                      **********************************87765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   6.9e-13   5.7e-10       2     128 ..      44     176 ..      43     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 6.9e-13
                 EEESSTTSSHHHHHHHHHHHHTHE........................EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTT CS
         AAA   2 llyGppGtGKTllakavakelgve........................fleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsg 76 
                 l++G+ G+GKT++a+ +ak l+ e                        ++ei++++ +   v+++ + ++++     + +  ++ +iDE++ l +++  
  EGE26794.1  44 LFTGTRGVGKTTIARILAKCLNCEtgmtsqpcgvcdtcisidqgrfldLIEIDAASRT--KVEDTRELLENVPYPPVQGR-YKVYLIDEVHMLSTHS-- 137
                 89******************97666666777888888777777777667888888777..56666666666666644444.7***********9999.. PP

                 CCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA  77 seseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrki 128
                           n+Ll+ l++  ++   v ++ at++p+kl+  ++ +R+ + +
  EGE26794.1 138 ---------FNALLKTLEEPPDY---VKFVFATTDPQKLPITII-SRCLQFV 176
                 .........***********995...99****************.9997765 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.2e-09   9.5e-07       2      68 ..      13      75 ..      12      85 .. 0.92
   2 ?    1.4   0.0      0.29   2.4e+02      86     109 ..     123     146 ..      93     154 .. 0.87
   3 ?   -3.6   0.2       9.8     8e+03      76     114 ..     240     279 ..     234     282 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.2e-09
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPv 68
                rPk+++e +gq++v + l+ +i++ +  +      l++G  G+Gktt+a+i+ak l+ +  +ts P 
  EGE26794.1 13 RPKNFSELLGQSHVAQALSNAIDTGRLHHA----YLFTGTRGVGKTTIARILAKCLNCETGMTSQPC 75
                9******************99999876543....689***************************995 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.29
      RuvB_N  86 dvlfideihrlsraveevlysame 109
                 +v +ide+h ls++  + l +++e
  EGE26794.1 123 KVYLIDEVHMLSTHSFNALLKTLE 146
                 7899********999888888877 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 9.8
      RuvB_N  76 aalltnleekdvl.fideihrlsraveevlysamedfrld 114
                  ++l  ++++dvl  i+ i+  +r++   l + m d ++d
  EGE26794.1 240 LSMLGLVNRTDVLeIIETIYHDDRMAISQLITNMRDKMVD 279
                 5677778888888345667777777777888888888877 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.3e-06    0.0019       3      43 ..      45      86 ..      44     138 .. 0.61
   2 ?   -0.2   0.1       1.7   1.4e+03      53     104 ..     413     476 ..     381     480 .. 0.64
   3 ?    1.8   0.0      0.41   3.3e+02      79     115 ..     668     707 ..     642     714 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.3e-06
      AAA_18  3 ltGtpGvGKttlakeLskrlgf.........gvnlrdvakenglllevdp 43
                 tGt GvGKtt+a+ L+k l++         g          +++++ d+
  EGE26794.1 45 FTGTRGVGKTTIARILAKCLNCetgmtsqpcG--------VCDTCISIDQ 86
                79***************988998644433331........3333333333 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.7
      AAA_18  53 dedkldklldaleenssaleegknlvidghlaeleseaakdikk..............vvLtaspe 104
                 d +++   +d l+    a++ g  l++d++ ++ + +++ +                 v Lt+s+e
  EGE26794.1 413 DSHFDSDKQDDLNDL--ASQIGTELILDQLDNDDVNTKDGQDTNqfahidqaqsiniaVNLTVSEE 476
                 444444444445554..4578999999999988876644332224566666666666666666665 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.41
      AAA_18  79 idghlaeleseaakdikk....vvLtaspeelleRlekRgy 115
                 ++ ++a++++++  ++      v +++  e+ + Rl++R +
  EGE26794.1 668 FENLHAKFLEHYPQIK-LslepVLVDCALEVPKSRLSDRHR 707
                 5666777777766544.35999****************974 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.9e-06    0.0015      20     114 ..      42     147 ..      23     167 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.9e-06
      AAA_30  20 vavltGpAGtGKttalkalreaweaa.g.....grviglAptgkaAkvLa..eelgieastiakllkrlk........grarlepg.tllivDEagmvd 101
                   + tG  G GKtt+ + l++ ++ + g         g+  t    ++ +  + ++i+a++  k+ ++ +            ++ + +++++DE+ m++
  EGE26794.1  42 AYLFTGTRGVGKTTIARILAKCLNCEtGmtsqpC---GVCDTCISIDQGRflDLIEIDAASRTKVEDTREllenvpypP---VQGRyKVYLIDEVHMLS 134
                 45789*******************9977775442...343333333332222344444444444443333444554652...55566************ PP

      AAA_30 102 tkqlaallkaaek 114
                 t++++allk +e+
  EGE26794.1 135 THSFNALLKTLEE 147
                 *********9987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.1e-05    0.0094       3      91 ..      44     147 ..      42     153 .. 0.70
   2 ?   -3.2   0.0       9.1   7.5e+03      41      65 ..     251     278 ..     246     309 .. 0.48

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-05
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT-.......-HHHHH--B--...........--------......G-SEEEEESGGG--HHHHHHHH CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdt.......teedlkgrreik.ngttslvd.splvraar......egeilvlDEveraesevlnsLl 86 
                 l  G  G+gK+++a+ la+ ln+e+ +   + +         +  ++  +ei+  ++t+ +d  +l +++       + +++++DEv++++++ +n+Ll
  EGE26794.1  44 LFTGTRGVGKTTIARILAKCLNCETGMTSQPCGVcdtcisiDQGRFLDLIEIDaASRTKVEDtRELLENVPyppvqgRYKVYLIDEVHMLSTHSFNALL 142
                 678******************77776665444331100000334455555555644444433145555555999989999******************* PP

                 HHHHS CS
       AAA_5  87 sllee 91 
                 + lee
  EGE26794.1 143 KTLEE 147
                 99997 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.1
                 HH--B--.........--------...G CS
       AAA_5  41 lkgrreikngttslvdsplvraar...e 65 
                 ++  +e+   + ++  s l +++r    
  EGE26794.1 251 VLEIIETIYHDDRMAISQLITNMRdkmV 278
                 3333333333444444444444443332 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.9e-06    0.0016       4      97 ..      42     156 ..      40     168 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.9e-06
      AAA_14   4 ilvitGaRrvGKTtllkqlikell................vkkesilyinldderdkkladpekllelilek..lke...ekktylflDEiqevpe..w 79 
                 +++ tG R vGKTt+++ l+k l                 ++ ++  +++l + + +++++ e+  +++le+  + +    + ++ ++DE++++++  +
  EGE26794.1  42 AYLFTGTRGVGKTTIARILAKCLNcetgmtsqpcgvcdtcISIDQGRFLDLIEIDAASRTKVEDT-RELLENvpY-PpvqGRYKVYLIDEVHMLSThsF 138
                 7889************99999988999*9988888877776666777777777666555555444.444444232.3576577789******9954225 PP

      AAA_14  80 ekalkslvdegknldviv 97 
                    lk l +  + +++++
  EGE26794.1 139 NALLKTLEEPPDYVKFVF 156
                 555555544445556555 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0     0.005       4.1      26      78 ..      20      68 ..       8      76 .. 0.80
   2 !    8.0   0.0    0.0017       1.4     281     305 ..     124     148 ..      91     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.005
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 26 lvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedv 78
                l+Gq +  +a   + + i +++l  +a L++G +g Gkt +a  ++k l+ ++
  EGE26794.1 20 LLGQSHVAQA---LSNAIDTGRLH-HAYLFTGTRGVGKTTIARILAKCLNCET 68
                5666655444...56788899998.99*******************9998766 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0017
                 XXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 281 vlfiDevhmlDiecfsylnralese 305
                 v  iDevhml   +f  l ++le++
  EGE26794.1 124 VYLIDEVHMLSTHSFNALLKTLEEP 148
                 788********************86 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.3e-05      0.01      12      51 ..      26      67 ..      19     194 .. 0.73
   2 ?   -0.2   0.4       1.4   1.2e+03      63     148 ..     424     444 ..     279     535 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-05
      AAA_16 12 Llsale.rvrsgrp.elvllsGesGvGKsslvrellralekd 51
                +++al+ ++ +gr  ++ l++G +GvGK++++r l++ l+ +
  EGE26794.1 26 VAQALSnAIDTGRLhHAYLFTGTRGVGKTTIARILAKCLNCE 67
                44455534445555799****************999866655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.4
      AAA_16  63 lesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrllallsrderplvlvlDdlqwad 148
                 l        la+++ +                                                            l+lD+l+  d
  EGE26794.1 424 L------NDLASQIGT-----------------------------------------------------------ELILDQLDNDD 444
                 1......224444444...........................................................44444444322 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   3.4e-05     0.027       8     117 ..      43     146 ..      38     162 .. 0.61
   2 ?   -2.7   0.1       7.9   6.4e+03      77     103 ..     431     465 ..     396     477 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.4e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdl.lrellralglelka..erlsseell.ealeqalraravielliiDEaq 101
                  + tG  G+GKTt +r l++ l+ e        + ++ ++ + + +  ++   ++l  ++ ++ +  +  +++ell +  +  ++ r++  + +iDE++
  EGE26794.1  43 YLFTGTRGVGKTTIARILAKCLNCE--------TGMTSQPCGVCdTCISIdQGRFLDLIEIDAASrtKVEDTRELLeNVPYPPVQGRYK--VYLIDEVH 131
                 5789*****************9633........33333333332333333233333333333333222356778885666777888877..******** PP

      AAA_22 102 hlrseealeeLrslln 117
                  l s   ++ L + l+
  EGE26794.1 132 ML-STHSFNALLKTLE 146
                 **.8888887755444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.9
      AAA_22  77 ellealeqalrarav........ielliiDEaqhl 103
                    e++ ++l++ +v         ++  iD aq +
  EGE26794.1 431 IGTELILDQLDNDDVntkdgqdtNQFAHIDQAQSI 465
                 33334444444433344444444455555555554 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.4e-05     0.011       7     140 ..       6     129 ..       1     160 [. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
       Rad17   7 elWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn..qksdfkgltekesrfl 103
                 +    ky+P+   el    +  +++ +++++  L ++     L +G  G gk+t+ ++L+k l  +    + p  + ++     +  f+ l+e +    
  EGE26794.1   6 QVLARKYRPKNFSELLGQSHVAQALSNAIDTGRLHHA----YLFTGTRGVGKTTIARILAKCLNCETGMTSQPCGVCDTCIsiDQGRFLDLIEIDAASR 100
                 5566789999999998777777777888888777777....9*********************999999998888877765345666777777777777 PP

       Rad17 104 sqiesfkeleLkdakylklqklGddlrtdkklilved 140
                 +++e  +el L +  y  +q       +  k+ l+++
  EGE26794.1 101 TKVEDTREL-LENVPYPPVQ-------GRYKVYLIDE 129
                 777777777.7777774444.......5556666665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.2e-05     0.026       2      46 ..      17      64 ..      16      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.2e-05
  Mg_chelatase  2 lkdvkGqeeakraleiaa.aGg..HnlllvGppGsGKtmlakrlpsll 46
                  ++++ Gq++  +al  a+ +G+  H  l++G+ G GKt +a+ l++ l
    EGE26794.1 17 FSELLGQSHVAQALSNAIdTGRlhHAYLFTGTRGVGKTTIARILAKCL 64
                  78999*********9998345354889***************998877 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.047        38      10      45 ..      40      75 ..      31      86 .. 0.80
   2 ?    8.2   0.0    0.0035       2.9      97     131 ..     115     151 ..      87     167 .. 0.75
   3 ?    0.2   0.0       1.1   8.8e+02      56      84 ..     275     311 ..     200     466 .. 0.75
   4 ?   -2.3   0.1       6.3   5.2e+03      62      87 ..     533     554 ..     504     579 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.047
      AAA_19 10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeei 45
                ++  l t+  G GKT++ +   ++l+ ++g+  +++
  EGE26794.1 40 HHAYLFTGTRGVGKTTIARILAKCLNCETGMTSQPC 75
                56678899*********9999999988887776665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0035
      AAA_19  97 ekklqeee.llivDEfqdvd.elqyrLlkallgekkk 131
                   ++q ++ + ++DE+ +++    ++Llk+l ++ ++
  EGE26794.1 115 YPPVQGRYkVYLIDEVHMLStHSFNALLKTLEEPPDY 151
                 46777778899*********9*********9876665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.1
      AAA_19  56 kelrerlaalgaeatTiHrlal........ldfddll 84 
                 +++ +++a +++ ++ iH++al        ld++d++
  EGE26794.1 275 DKMVDATAIFDELIDCIHQMALmqvlpdipLDMNDEQ 311
                 3455555555555888888888666666663333333 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 6.3
      AAA_19  62 laalgaeatTiHrlalldfddlltea 87 
                 l    ++a T+ +l  +++d++++  
  EGE26794.1 533 L--QSVPAVTVAAL--VKVDSKKKAS 554
                 3..34568899988..5555544332 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.024        20       8      45 ..      23      61 ..      16      69 .. 0.75
   2 ?    7.2   0.0    0.0057       4.6     122     159 ..     111     147 ..      85     160 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.024
                HHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHH CS
      ResIII  8 Qeeaienlleklks.krdkrglikmaTGtGKTlvaakli 45
                Q ++ ++l ++++  + ++ +l+  + G+GKT +a  l+
  EGE26794.1 23 QSHVAQALSNAIDTgRLHHAYLFTGTRGVGKTTIARILA 61
                6666677777776546677899**********9985554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0057
                 .....HHHTTT-SEEEEETGGGTTS.TTTHHHHHT--- CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgakkswreilekfke 159
                 e+      ++r++v++iDE+H l+  +s++++l+ ++e
  EGE26794.1 111 ENVPYPPVQGRYKVYLIDEVHMLST-HSFNALLKTLEE 147
                 5556667788999************.999998887755 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   8.2e-05     0.067      10      50 ..      26      72 ..      19      75 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.2e-05
                HHHHHHHCH.....TEEEEEEESTTSSHHHHHHHHHHHTT--.---- CS
        TsaE 10 lgkklakal.....gdvilLeGdLGaGKTtlvrglakalgve.evkS 50
                ++++l +a+     +++ l++G  G+GKTt++r lak l++e  ++S
  EGE26794.1 26 VAQALSNAIdtgrlHHAYLFTGTRGVGKTTIARILAKCLNCEtGMTS 72
                555555555554445679*********************99866665 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0042       3.4       1     107 [.      21     158 ..      21     165 .. 0.62
   2 ?    1.3   0.0      0.43   3.5e+02      44      82 ..     373     411 ..     369     419 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0042
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--....TTS-EE--S.STTHHHH-H.....................HHHHHHT CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhk....nsgpwleif.vverlaklp.....................ldlleqa 68 
                      lg+s + q+l + ++  +  ++ +f tG  G gk+++Ar+L+k    + g  +++  v+++++++                       +lle++
       EGE26794.1  21 LGQSHVAQALSNAIDTGRLHHAYLF-TGTRGVGKTTIARILAKclncETGMTSQPCgVCDTCISIDqgrfldlieidaasrtkvedtRELLENV 113
                      6899999999999999887777766.9***********99986211122223333224555554444555555666666666666666666664 PP

                      .......TTSEEEEEE-TT--HHHHHHHHHHHHHHTTTT-EEEEEE CS
  Sigma54_activ_2  69 .......kggtLylkdiadlskaeqkeLlellakaeksslrlVsts 107
                             +  + ++ +++ ls +    Ll+ l++  +  +++V+++
       EGE26794.1 114 pyppvqgRYKVYLIDEVHMLSTHSFNALLKTLEEP-PDYVKFVFAT 158
                      44444444455666666666666666666666666.6666666665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.43
                      TTS-EE--SSTTHHHH-HHHHHHHTTTSEEEEEE-TT-- CS
  Sigma54_activ_2  44 nsgpwleifvverlaklpldlleqakggtLylkdiadls 82 
                      n++p  ++ + ++  ++p d+++ +k+++    +i+ ls
       EGE26794.1 373 NDTPAKQPEDADNHNNMPDDIVDGLKDQVCTTGEIDALS 411
                      568889*****9999****************99999998 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00021      0.17       1      19 [.      49      67 ..      49      69 .. 0.94
   2 ?   -2.3   0.0       5.3   4.3e+03      58      82 ..     219     243 ..     215     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00021
                TTSSHHHHHHHHHHHHTSE CS
         SKI  1 mGaGKstvGkllAkklgle 19
                +G+GK+t++++lAk l++e
  EGE26794.1 49 RGVGKTTIARILAKCLNCE 67
                79**************996 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.3
                 HCCCSSEEEEE-TTGGGSHHHHHHH CS
         SKI  58 lleeeglViatGGGavlseenrell 82 
                  l+ ++  ia GGG ++++   ++l
  EGE26794.1 219 ALSLTDQAIAFGGGQIQTDTVLSML 243
                 555667789******9999877766 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00027      0.22      98     132 ..      39      73 ..       2      77 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00027
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgevse 132
                   ++  ++ G  GvGK+t+   l+  l+ +tg +s+
   EGE26794.1  39 LHHAYLFTGTRGVGKTTIARILAKCLNCETGMTSQ 73 
                  457789************************99987 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00018      0.15      60      86 ..      41      67 ..      11      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00018
  Herpes_Helicase 60 saylitGtAGaGkstsiqalaenldCl 86
                     +ayl tGt G Gk+t   +la+ l+C 
       EGE26794.1 41 HAYLFTGTRGVGKTTIARILAKCLNCE 67
                     79************************4 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00026      0.21       6      83 ..      44     139 ..      41     150 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00026
      AAA_24   6 liyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie.....swedfldevvel...................aaeladyktlviDtideleel 80 
                 l +G  g+GKTt+a+ l   + ++++e G+ s      +++          fld ++ +                   +  + +yk++ iD +  l  +
  EGE26794.1  44 LFTGTRGVGKTTIARIL---AKCLNCETGMTSQPCGVCDTCIsidqgR---FLDLIEIDaasrtkvedtrellenvpyPPVQGRYKVYLIDEVHMLSTH 136
                 5689*************...7788888888888777777777453440...444444445555555555555555599888888999999999988777 PP

      AAA_24  81 cla 83 
                  ++
  EGE26794.1 137 SFN 139
                 665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00071      0.58       3      22 ..      44      63 ..      42      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00071
      AAA_28  3 vitGgestGKTtlleaLaar 22
                 +tG+ + GKTt+++ La+ 
  EGE26794.1 44 LFTGTRGVGKTTIARILAKC 63
                79***************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 4953.28
//
Query:       EGE26795.1  [L=507]
Description: lysyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-81  271.3   0.9    1.2e-80  271.0   0.9    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.7e-09   37.5   0.0    3.5e-09   36.5   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    4.1e-05   23.2   0.7      0.018   14.5   0.3    2.4  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.0   0.9     2e-84   1.2e-80       2     313 ..     165     504 ..     164     505 .. 0.91

  Alignments for each domain:
  == domain 1  score: 271.0 bits;  conditional E-value: 2e-84
                  CCHHHHTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEE CS
                  xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   2 eelrlknryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqia 98 
                   e+++++ryldl  +e++++++ +r++v++ +r +l+++ f+e+etP+++   +++ ar+F++++++ + +++ L+++p+lyl++l+v+g+drvf+i+
   EGE26795.1 165 TEVKYRKRYLDLmVNEETRNTFAIRAKVVAGIRAFLTQERFMEVETPMMHVIPGGASARPFVTHHNALDMQLY-LRIAPELYLKRLVVGGFDRVFEIN 261
                  6899********9*******************************************************88999.************************ PP

                  EEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS...........-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xx RF
  tRNA-synt_2  99 raFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklnei...........gk 185
                  r+FR+E ++t++++ EFt+ie++ ++++++d+m ++e+++++l+ ++  +s++  ++       ++k pfk++t+ +ai ++n+              
   EGE26795.1 262 RNFRNEGVSTRHNP-EFTMIEFYQAYADYKDLMALTERMLETLAMDI-LGSTDVSYQGEVF---SFKGPFKKITMFDAILEYNSDfsaddindrefL- 353
                  **************.********************************.6665665555544...99***************9988555444444441. PP

                  S--HHHHHHHHH.............................HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHH CS
                  xxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 186 dldkaderalvk.............................keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeele 254
                             k                             ++  +p+f+t++Pae++p+++r++++ + +t++++++i g El++G ++++dp  + 
   EGE26795.1 354 ----------AKfvkdelkqevkpsfglgklqtivfeetveTKLRQPTFITEYPAETSPLARRNDTN-PHVTDRFEMFIGGRELANGFSELNDPIDQA 440
                  ..........44555556666668888888888888888878899*****************99999.9***************************** PP

                  HHHHHCCHH.....SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 255 eklkskgld.....eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  e+++++  +     +ea++ + +++ealeyG+pp++G g+G+dRlvml++++ sIrdvi+FP++
   EGE26795.1 441 ERFRAQVAEkdagdDEAMHYDADFIEALEYGLPPTAGEGIGIDRLVMLFADAASIRDVILFPHM 504
                  *****9998999999***********************************************87 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   5.8e-13   3.5e-09       2      76 .]      76     148 ..      75     148 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 5.8e-13
                      EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET....HHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEEEE CS
  tRNA_anti-codon   2 tvaGrvtsisdrsggkvifidlrDgtgriqvvlfr....eeatklaenlkeGdvvrvtGrvkrrpggelelkveeiell 76 
                      +vaGrv+    r++    fi+++D t+riq++++r    +e  +l ++l+ Gd+v ++G+++r+ +g+l ++ e +ell
       EGE26795.1  76 KVAGRVMLN--RGS----FIVIQDMTDRIQLYVDRkglpSETLELIKSLDLGDIVAASGYIGRSGKGDLYVHLEAFELL 148
                      689999999..999....**********************************************9999***99999876 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.3     3e-06     0.018     103     171 ..     256     325 ..     254     339 .. 0.83
   2 !    6.3   0.0   0.00095       5.7     214     234 ..     478     498 ..     466     502 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3e-06
                   EEEEEEEEEBSST-SSSB-SEEEEEEEEEE..ETT--HHHHHHHHHHHHHHHCTSTEEEEEEECEETTEEE CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveglvv..denvsladlkgvleellkklfgaevkvrfrpsyfpfteP 171
                   +++ i+r fR++ v  +h +eF+ +e+  +  d +  +a    +le+l+ ++ g + +v ++ + f f  P
    EGE26795.1 256 RVFEINRNFRNEGVSTRHNPEFTMIEFYQAyaDYKDLMALTERMLETLAMDILGST-DVSYQGEVFSFKGP 325
                   799***********************986511555557777889999999999998.99999999999877 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00095
                   EEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 214 fGlGveRlamlkygieDiRel 234
                    G+G++Rl ml  +   iR++
    EGE26795.1 478 EGIGIDRLVMLFADAASIRDV 498
                   59*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3583.56
//
Query:       EGE26796.1  [L=37]
Description: hypothetical protein EA1_04912 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.41
# Mc/sec: 271.85
//
Query:       EGE26797.1  [L=271]
Description: exonuclease III [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-18   66.9   0.1    2.4e-18   66.5   0.1    1.2  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.1   1.3e-22   2.4e-18       1     233 []       5     262 ..       5     262 .. 0.84

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 1.3e-22
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpltslfrrtfiefnd 96 
                    +++N+ng     + ++++  +++d+l    aD++gLQE++  ++ ++  +    + lg++     ++g++ ++g+a++s+  +t ++   + + +d
     EGE26797.1   5 VSFNINGL----RARPHQLEAIRDILG---ADIIGLQETKVHDALFPV-NM--VQDLGYHVE---FFGQKSHYGVALASKIAPTFVQKGFPFGHDD 87 
                    59*****7....8899**********5...59*******999986653.33..333333333...6899**************8887777777777 PP

                    SSGCEEEEEEEEEEEEEEE.........CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH....... CS
                    xxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
  Exo_endo_phos  97 lvaalrreplaakleqlni.........ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap....... 176
                       +l+  + + ++    +         ++++  + + +++++a+l + ++  ++ g+ +i++GD+N  p d d+   ++++++            
     EGE26797.1  88 AQRRLIHARYDFDGRSIDVlngyfpqgeNRSHEIKFPMKREFYADLNRYIDELQADGRELIIMGDMNISPEDIDVGIGAANAKRWLAKGtcsflpe 183
                    777777777777777766689***********************************************9999999997777777665558877777 PP

                    .......H..................SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    .......x..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 .......v..................glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                                              ++ ++    + +  t+  g r+D+il +++l+   +  ++ +  + +   +++SDH
     EGE26797.1 184 erawyqmLmstgltdtyrlfypkshdEFSWFDYRSRGFEDTPKRGLRIDHILCTDTLKNDCVAAGISYDIRAM---DKPSDH 262
                    666655505566677777888999*********************************9999999999999998...8****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2019.75
//
Query:       EGE26798.1  [L=148]
Description: thioesterase superfamily protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-10   41.9   0.2    1.5e-10   41.6   0.2    1.0  1  4HBT_2    Thioesterase-like superfamily
    5.6e-09   36.2   0.0    7.9e-09   35.8   0.0    1.2  1  4HBT      Thioesterase superfamily


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.2   1.7e-14   1.5e-10       3     120 ..      12     139 ..      10     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.7e-14
      4HBT_2   3 pndvDlnghlnnarylryleearvkflertgl.........ksrsiarrgiglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgk 92 
                  n +D+ g +++a +l ++e +r+++l+  g          + +   r+ ++ ++s+a ++y  pl   d+l v+++ ++i   +l i + +++++++k
  EGE26798.1  12 INHTDAGGIVYHANHLVFFENCRRDWLTTLGYdgyflslddDANKESRKAVHFVVSHADITYHTPLLVDDELAVTVDEVRIRPASLMIHQSIYRPNQNK 110
                 6889***********************955554445555444555555599*******************************************98777 PP

      4HBT_2  93 kaarveerivvmdygk.rskkapvPpell 120
                  a +++ +++++ ++k ++++  +P+ + 
  EGE26798.1 111 PATTATITLACVINDKkTIRPHRLPKKFV 139
                 78777777777777776679999998765 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   8.8e-13   7.9e-09       1      77 [.      18     110 ..      18     112 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 8.8e-13
                 TSSB-HHHHHHHHHHHHHHHHHHTTST................TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCE CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggr................gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrl 77 
                 gG+v++++ l +++ ++ ++l++lg +                   +vv++  i+++ p  ++del v++  +r+  +s+ +++ +++ ++ +
  EGE26798.1  18 GGIVYHANHLVFFENCRRDWLTTLGYDgyflsldddankesrkAVHFVVSHADITYHTPLLVDDELAVTVDEVRIRPASLMIHQSIYRPNQNK 110
                 69*************************************************************************************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1181.69
//
Query:       EGE26799.1  [L=356]
Description: 3-isopropylmalate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.7e-134  446.4   0.0   7.5e-134  446.3   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.3   0.0  4.2e-138  7.5e-134       1     348 []       4     352 ..       4     352 .. 0.99

  Alignments for each domain:
  == domain 1  score: 446.3 bits;  conditional E-value: 4.2e-138
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CS....SSSSSHHHHHHHHHHHTTEE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpk....ekevrpengLlaLrkeldlf 95 
                 kia+l+gdgiGpe+v++a+kvl+++  ++gl++++e++++Gg+a+d++g p p +t e++++ad+vllgavg+pk    ++ +rpe+gLla+rk+l+lf
  EGE26799.1   4 KIAILNGDGIGPEIVAQAVKVLDKLI-EQGLDVSYEYAKLGGEAYDAYGLPYPSQTQEIVQKADAVLLGAVGSPKyddlDRPLRPERGLLAIRKDLNLF 101
                 79*********************998.6778*********************************************999999***************** PP

                 EEEEEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH CS
      Iso_dh  96 anlrpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse 194
                 anlrp+ ++++l+++s+lk+evv ++d++ivReltg+iYfge++ + +  ++e+++++t++y e+ei+ria+++fe+A+kr + k+++vdKanvl+++e
  EGE26799.1 102 ANLRPAILYKELADASTLKPEVVAGLDILIVRELTGDIYFGEPRGIVTLDNGEREGFNTMRYGESEIRRIAKVSFEAAQKR-RGKLCSVDKANVLETTE 199
                 ************************************************889******************************.***************** PP

                 HHHHHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEESS---CCCTTSS-S-THHH CS
      Iso_dh 195 lwrkiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEavHGsapdiagkdkaNpiav 293
                 lwr+i++ev + +yp++el+h++vD+aamqlvk+pkqfdVi+t N+fGDilSD+a++l+Gs+G+lpSasl+e + +++E+ HGsapdiag+dkaNp+a+
  EGE26799.1 200 LWRQIFTEVGK-DYPEVELSHMYVDNAAMQLVKNPKQFDVIATGNIFGDILSDQASMLTGSIGMLPSASLNETGKGLYEPSHGSAPDIAGQDKANPLAT 297
                 ***********.*************************************************************************************** PP

                 HHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHTSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 294 ilSaalmLryslgleeaAdkiekAvekvleagivTkDlageaakevstsefgdav 348
                 ilS a++ rysl+ e+ A +ie+Av+kvle+g++T+D+++  ++ vs++e+g+av
  EGE26799.1 298 ILSLAMLVRYSLNDEQRAVQIERAVQKVLEQGYRTADIYEDGTTLVSCDEMGEAV 352
                 *****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2644.52
//
Query:       EGE26800.1  [L=167]
Description: hypothetical protein EA1_04932 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1200.86
//
Query:       EGE26801.1  [L=216]
Description: isopropylmalate isomerase small subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-39  134.6   0.0    3.6e-39  134.1   0.0    1.2  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.0     2e-43   3.6e-39       1     129 [.       1     131 [.       1     133 [. 0.90

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 2e-43
                  CCCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEE......EHHHHHHHHHHTT--EEEE--SSBTBS---TH CS
  Aconitase_C   1 mekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgeke......dvvdaaerykkegaklvviagknfGeGSSReh 92 
                  mek+++++G+ +++++snvdtdl+ipkqf++ i+++g+g +l++e r+ ++  l +   +      d+v+++ ry   ga++++++ knfG+GSSReh
   EGE26801.1   1 MEKYTTEQGIVAPLDRSNVDTDLIIPKQFLKSIKRTGFGDNLFDELRYLDEGFLGQDI-NkrpknpDFVLNQARYA--GATILLAR-KNFGCGSSREH 94 
                  799********************************************98764332211.1133345**********..99999999.*********** PP

                  HHHHHHHTTEEEEEES-B-HHHHHHHHHTT-EEEEES CS
  Aconitase_C  93 AAkalrllGikaviaeSFerIfennliknglLplefk 129
                  A++al  +G++ via+SF++If+nn +kng+Lp+ ++
   EGE26801.1  95 APWALEEYGFRTVIAPSFADIFYNNCFKNGMLPVVLS 131
                  *********************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1635.33
//
Query:       EGE26802.1  [L=472]
Description: isopropylmalate isomerase large subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-156  520.9   0.3   3.7e-156  520.7   0.3    1.0  1  Aconitase  Aconitase family (aconitate hydratase)


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  520.7   0.3  2.1e-160  3.7e-156       1     461 []       8     464 ..       8     464 .. 0.95

  Alignments for each domain:
  == domain 1  score: 520.7 bits;  conditional E-value: 2.1e-160
   Aconitase   1 ekiwdahlvee..eg..iayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefLksaak 95 
                 +k+wd+hlv++  +g  + y+ dr ll++vt++qa+++la  +++ +rl++++at dh+vp++     ++ ++++  + ++d ++r   ++++L++++k
  EGE26802.1   8 DKLWDDHLVRQrdDGssLIYI-DRQLLHEVTSPQAFEGLALNGRTPWRLSANIATPDHNVPTS-----LM-ERKQGMAGIADDTSR--IQVKTLDDNCK 97 
                 699******664444557777.*****************************************.....44.333446778888888..9********** PP

   Aconitase  96 afgirvvppg...qGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigk 191
                 +f++  + ++   qGIvH+v++E+gl+lpg+tvv++DSHT+++g+lG+la G+G++e+e+vl++q+l  k++k++ v+++Gkl++gvt+kD+vla+i+k
  EGE26802.1  98 SFNVMQFGINdirQGIVHVVGPEQGLTLPGMTVVCGDSHTATHGALGCLAHGIGTSEVEHVLATQCLVAKKMKNMLVRVDGKLGKGVTPKDVVLAIIAK 196
                 **66555555555************************************************************************************** PP

   Aconitase 192 lrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalf.elaadedaeydkvleldlstlep 289
                 ++++g++g+++Ef G+   ++s+e+r+T++NMa+E GA++gl++vd+kt++Y+k  +r++a+ +++++++a+ ++ +l++d+da++d v+ l+ +++ep
  EGE26802.1 197 IGTAGGTGYAIEFGGQVFCDMSIEGRMTVCNMAIEGGARVGLVAVDDKTIDYVK--DRPYAP-TGDDWERAVTYWnTLHSDDDAHFDAVVVLNGDEIEP 292
                 ******************************************************..******.7***********88********************** PP

   Aconitase 290 svagpkrPqdavplselvk.k.efkeelekeaaekaley.klkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgv.ktsvaPGS 384
                 +v+++++P++++++s++v+    +++++++++  +a++y +l++g++l+d+ +d ++igSCTNs++ed+raaa++++     g+kv+p++ +++v++GS
  EGE26802.1 293 QVSWGTSPEMVIAVSQNVPtLdMARDDVQRNDWMRAYQYmGLTAGQPLSDIVLDRVFIGSCTNSRIEDIRAAAEVVK-----GHKVAPSIkQAMVVAGS 386
                 ******************963357799**************************************************.....********99******* PP

   Aconitase 385 evvkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                 + vka++e+eGl++i+++aGfe++++gCs+C++ n+d+l++ge ++s+sNRNFegRqg+++r++L+SP +++aaA+aG
  EGE26802.1 387 GLVKAQAEQEGLDKIFMDAGFEWREPGCSMCLAmNADKLQAGEHCASTSNRNFEGRQGNGGRTHLVSPIMAAAAAIAG 464
                 *****************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3494.48
//
Query:       EGE26803.1  [L=290]
Description: LysR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-38  130.5   1.4    1.8e-37  128.8   0.6    1.8  2  LysR_substrate   LysR substrate binding domain
      1e-20   73.4   0.0    1.9e-20   72.6   0.0    1.4  1  HTH_1            Bacterial regulatory helix-turn-helix protei
     0.0031   17.0   0.0     0.0088   15.6   0.0    1.8  1  HTH_24           Winged helix-turn-helix DNA-binding
      0.007   16.1   0.0      0.018   14.8   0.0    1.7  1  HTH_30           PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.019   14.1   0.0      0.026   13.7   0.0    1.2  1  ABC2_membrane_3  ABC-2 family transporter protein
      0.066   13.3   0.0        8.5    6.6   0.0    2.5  2  HTH_28           Helix-turn-helix domain
       0.12   12.3   0.0        0.4   10.6   0.0    1.9  1  MarR             MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.13   3.2e+02      12      42 ..      55      85 ..      54      89 .. 0.86
   2 !  128.8   0.6     7e-41   1.8e-37       4     204 ..      89     286 ..      86     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.13
                    EECCCHHHHHHHHHHHHHHHSTTEEEEEEEE CS
  LysR_substrate 12 apptlaryllppllarfraryPevelelveg 42
                    ++pt+a+y l p+++r++  y   + +l+ +
      EGE26803.1 55 IIPTAAAYDLLPFVRRWLDDYEACKASLQHA 85
                    6899****************99988888765 PP

  == domain 2  score: 128.8 bits;  conditional E-value: 7e-41
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargepvs 97 
                      +grL ig++++++ ++l+++l+rf + yP v+le++  dsee +++++ege+ la++++pp  d++l ++ L+++pl+ v     pLa++ +vs
      EGE26803.1  89 ASGRLVIGTSHHIGLHHLAHVLKRFIQTYPAVQLEVRFVDSEEAHKAVLEGEISLAFLTLPPtFDRRLNYHTLWSDPLYFVTGTLSPLAQKSKVS 183
                     69********************************************************************************************* PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST.TCEEEEEEEEETTC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep.plprelylvyrkgr 191
                     l +La++p il  +++ + +  ++ +++++l+p +++++n le+++ lv+ GlG+++lp+ ++++    + l+ ++++e  +l+r+l+lv++++ 
      EGE26803.1 184 LLQLAHYPAILPAANTFTSQITLAEFAKHNLRPYATMSTNPLESIRMLVSVGLGWSVLPETLINQ----D-LIKIDMAENiELQRHLGLVTNPNL 273
                     ***************************************************************66....3.5558888877999*********** PP

                     CCHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidfl 204
                      +s+ ++a++ +l
      EGE26803.1 274 TRSASMQALLSML 286
                     *********9887 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   7.2e-24   1.9e-20       3      59 ..       5      61 ..       3      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 7.2e-24
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                 l++fvav+++gs++ AAe+L+++qpavs++ik+LE+e+g+ Lf+  gr++ +T+a+
  EGE26803.1  5 NLATFVAVMQTGSISSAAEKLYITQPAVSKRIKNLEDEFGTALFDTVGRSIIPTAAA 61
                699****************************************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.4e-06    0.0088      22      44 ..      20      42 ..      17      42 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
      HTH_24 22 eLAerlglSpstvnrrlkrLeee 44
                  Ae+l +++++v++r+k+Le+e
  EGE26803.1 20 SAAEKLYITQPAVSKRIKNLEDE 42
                569******************96 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.9e-06     0.018       9      47 ..      13      50 ..       6      59 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.9e-06
                HHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSH CS
      HTH_30  9 lenggnisatAkaLhvHrnTlryRLrrieellgldlddp 47
                ++  g+is +A++L++    +++R++ +e+ +g  l d+
  EGE26803.1 13 MQ-TGSISSAAEKLYITQPAVSKRIKNLEDEFGTALFDT 50
                44.49*************************999888776 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     1e-05     0.026      45     133 ..     107     210 ..      80     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1e-05
  ABC2_membrane_3  45 sqqlvealeaspsvelvyevdseeeakkalkngdidg.ilvipkgfskdll............kgesatvtvli..nssnlnsskailnalnsl 123
                      + +l ++++++p v+l  ++ + eea ka+ +g+i+   l++p  f++ l+            +g+ +++   +  +  +l  ++ail a n++
       EGE26803.1 107 AHVLKRFIQTYPAVQLEVRFVDSEEAHKAVLEGEISLaFLTLPPTFDRRLNyhtlwsdplyfvTGTLSPLAQKSkvSLLQLAHYPAILPAANTF 200
                      55678999*******999****************99648888******9998888877776663333333222211333334448888888888 PP

  ABC2_membrane_3 124 lqqlnasalv 133
                      ++q++ ++ +
       EGE26803.1 201 TSQITLAEFA 210
                      7777765543 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0033       8.5      10      40 ..      13      44 ..      10      54 .. 0.78
   2 ?    4.1   0.0      0.02        52      29      46 ..      68      84 ..      66      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0033
      HTH_28 10 aaGhsvreaArelgisrrtvyrWikryee.gG 40
                ++ +s++ aA++l i++  v++ ik +e  +G
  EGE26803.1 13 MQTGSISSAAEKLYITQPAVSKRIKNLEDeFG 44
                5678****************888887775466 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.02
      HTH_28 29 vyrWikryeegGiagLvp 46
                v+rW+  ye+   a+L +
  EGE26803.1 68 VRRWLDDYEA-CKASLQH 84
                8********9.7788876 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016       0.4      24      43 ..      22      41 ..      12      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                HHHHTS-HHHHHHHHHHHHH CS
        MarR 24 akklgvskstvtrvldrLek 43
                a+kl++++++v++ ++ Le+
  EGE26803.1 22 AEKLYITQPAVSKRIKNLED 41
                99*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2266.18
//
Query:       EGE26804.1  [L=204]
Description: Holliday junction DNA helicase RuvA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-18   65.5   0.7    1.1e-17   64.4   0.7    1.6  1  HHH_5           Helix-hairpin-helix domain
    2.1e-16   59.8   0.2    1.4e-15   57.1   0.1    2.3  3  RuvA_N          RuvA N terminal domain
    1.3e-12   48.0   1.7    2.9e-12   46.8   1.7    1.6  1  RuvA_C          RuvA, C-terminal domain
    1.4e-06   27.8   0.9    0.00093   18.9   0.1    2.6  2  HHH             Helix-hairpin-helix motif
      0.002   18.5   0.3       0.19   12.1   0.1    2.4  2  HHH_8           Helix-hairpin-helix domain
     0.0026   17.8   0.0        2.9    8.0   0.0    2.6  2  HHH_2           Helix-hairpin-helix motif
     0.0034   17.2   0.1      0.085   12.7   0.0    2.5  3  DUF3173         Domain of unknown function (DUF3173)
     0.0048   17.3   1.8        5.4    7.4   0.1    3.0  3  Ribosomal_S13   Ribosomal protein S13/S18
     0.0055   17.0   0.1       0.23   11.9   0.0    2.5  2  IMS_HHH         IMS family HHH motif
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.044   14.1   0.0    1.8  2  PG_binding_2    Putative peptidoglycan binding domain
      0.029   15.0   0.9        1.6    9.3   0.1    2.5  2  5_3_exonuc      5'-3' exonuclease, C-terminal SAM fold
      0.034   14.4   0.1       0.45   10.8   0.0    2.3  2  HHH_3           Helix-hairpin-helix motif
      0.036   14.4   0.1          4    7.8   0.0    2.4  2  Transposase_20  Transposase IS116/IS110/IS902 family
      0.095   13.1   0.0       0.27   11.6   0.0    1.7  1  HHH_7           Helix-hairpin-helix motif
       0.14   12.1   0.0       0.27   11.1   0.0    1.5  1  A1_Propeptide   A1 Propeptide
       0.17   12.1   0.2        8.9    6.6   0.0    2.5  3  Cdd1            Pathogenicity locus


Domain annotation for each model (and alignments):
>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.7   9.5e-21   1.1e-17       1      56 [.      72     129 ..      72     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 9.5e-21
                 -HHHHTSTT--HHHHHHHHTTT--SHHHHHHS...-H.HHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5   1 feeLlsvsGiGpktAlallsaGiesvedlaaa...dv.eeLakipGiGkktAeriilelk 56 
                 f++L++++G+G+k+Ala+ls+   sv+++++a   d  ++L ++pGiGkktA+ri+l lk
  EGE26804.1  72 FRKLIKINGVGAKMALAMLST--LSVAEIKHAietDYdAALVRVPGIGKKTAQRILLDLK 129
                 99*******************..******99954443145******************98 PP

>> RuvA_N  RuvA N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   1.2e-18   1.4e-15       1      60 []       1      62 [.       1      62 [. 0.94
   2 ?   -1.0   0.0       1.7   1.9e+03      19      33 ..      76      91 ..      73     103 .. 0.72
   3 ?   -2.6   0.0       5.6   6.3e+03      13      25 ..     103     117 ..      94     119 .. 0.71

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.2e-18
                -EEEEEEEEEEESSCE.EEEEETTEEEEEEE-HHHHCC.-TTSEEEEEEEEEEETTEEEEEE CS
      RuvA_N  1 MIaylkGkvvekepds.ivvevggvGYevfvplstlss.kegeevklythlivrEdalsLYG 60
                MI+ ++G+v +++    +++  +gvGYe+ +p +++ + ++g ++ +y+h++vrEda+ L+G
  EGE26804.1  1 MIGMISGQVQYLNAPIaCILTSNGVGYEIELPIPSFCQlTIGAQTAVYVHHHVREDAINLFG 62
                ***********977753799****************99*99***99***************9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.7
                EEETTEEEEEEE-.HH CS
      RuvA_N 19 vevggvGYevfvp.ls 33
                + ++gvG +  +  ls
  EGE26804.1 76 IKINGVGAKMALAmLS 91
                7899999988777444 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5.6
                 SSCE..EEEEETTEE CS
      RuvA_N  13 epds..ivvevggvG 25 
                 e+d+  ++v v g+G
  EGE26804.1 103 ETDYdaALVRVPGIG 117
                 444444899999998 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   1.7   2.6e-15   2.9e-12       4      47 .]     159     202 ..     157     202 .. 0.94

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.6e-15
                 HHHHHHHHHCTS-HHHHHHHHHHHHC-TTS-HHHHHHHHHCCTT CS
      RuvA_C   4 edaveALlaLGYkekeaekAvakvlanpgasveelIraALklLs 47 
                 +++++AL++LGYkekea+ A++++  ++  ++++l++aAL+ Ls
  EGE26804.1 159 AEVESALMNLGYKEKEAQVAIKNAQSDAKNNTSDLLKAALRQLS 202
                 89**********************8788888***********97 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0051       5.7      13      25 ..      75      87 ..      74      91 .. 0.87
   2 !   18.9   0.1   8.3e-07   0.00093      13      28 ..     110     125 ..     108     126 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0051
                HHTSTT-SHHHHH CS
         HHH 13 LlalPGVGpktAe 25
                L ++ GVG k+A 
  EGE26804.1 75 LIKINGVGAKMAL 87
                789********95 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 8.3e-07
                 HHTSTT-SHHHHHHHH CS
         HHH  13 LlalPGVGpktAeaIl 28 
                 L+ +PG+G+ktA++Il
  EGE26804.1 110 LVRVPGIGKKTAQRIL 125
                 789************9 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.053        59      38      61 ..      67      87 ..      64      93 .. 0.78
   2 !   12.1   0.1   0.00017      0.19      37      63 ..      97     124 ..      89     126 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.053
                -SS-HHHHTTHCTTSTT--HHHHH CS
       HHH_8 38 lpeeitsleeeltklpgiGkkiaa 61
                ++++i     +l k+ g+G+k+a 
  EGE26804.1 67 HDRDIFR---KLIKINGVGAKMAL 87
                5555555...599*********96 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00017
                 C-SS-HHHH.TTHCTTSTT--HHHHHHH CS
       HHH_8  37 alpeeitsl.eeeltklpgiGkkiaaki 63 
                 + +++i++  +++l ++pgiGkk+a++i
  EGE26804.1  97 EIKHAIETDyDAALVRVPGIGKKTAQRI 124
                 4555555533337899**********98 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0026       2.9      23      62 ..      61     100 ..      41     102 .. 0.84
   2 !    7.4   0.0    0.0043       4.8      36      52 ..     109     125 ..     100     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0026
       HHH_2  23 FksldaLkkasleeLlevddiGeeiAqsivefFeneknre 62 
                 F+ +d+  +  + +L++++++G ++A +  + ++  + + 
  EGE26804.1  61 FGFMDRHDRDIFRKLIKINGVGAKMALAMLSTLSVAEIKH 100
                 66666667777899************99999988877665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0043
       HHH_2  36 eLlevddiGeeiAqsiv 52 
                  L+ v++iG+++Aq i 
  EGE26804.1 109 ALVRVPGIGKKTAQRIL 125
                 699***********995 PP

>> DUF3173  Domain of unknown function (DUF3173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.27     3e+02       6      24 ..      55      74 ..      53      79 .. 0.87
   2 ?   -3.0   0.0       6.4   7.2e+03      12      22 ..     115     125 ..     109     129 .. 0.74
   3 !   12.7   0.0   7.6e-05     0.085       6      27 ..     163     184 ..     161     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.27
     DUF3173  6 kdLikl.GfkehtArdiIrq 24
                +d i+l Gf     rdi+r+
  EGE26804.1 55 EDAINLfGFMDRHDRDIFRK 74
                6889999***********97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.4
     DUF3173  12 GfkehtArdiI 22 
                 G  ++tA++i+
  EGE26804.1 115 GIGKKTAQRIL 125
                 66788999886 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 7.6e-05
     DUF3173   6 kdLiklGfkehtArdiIrqaKk 27 
                 + L++lG+ke+ A+  I++a++
  EGE26804.1 163 SALMNLGYKEKEAQVAIKNAQS 184
                 57****************9975 PP

>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0048       5.4      10      45 ..      68     103 ..      64     108 .. 0.84
   2 !    7.0   0.0    0.0064       7.2      14      36 ..     107     129 ..     101     148 .. 0.80
   3 ?    1.1   0.1      0.44     5e+02      16      54 ..     164     201 ..     151     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0048
  Ribosomal_S13  10 kkkveialtaikGiGrrkakiilkkadvdedkrige 45 
                    ++ +   l +i+G+G + a ++l  + v e k++ e
     EGE26804.1  68 DRDIFRKLIKINGVGAKMALAMLSTLSVAEIKHAIE 103
                    566788899*****************9999877665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0064
  Ribosomal_S13  14 eialtaikGiGrrkakiilkkad 36 
                      al  + GiG+++a+ il +++
     EGE26804.1 107 DAALVRVPGIGKKTAQRILLDLK 129
                    5799**************97765 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.44
  Ribosomal_S13  16 altaikGiGrrkakiilkkadvdedkrigelteeeieki 54 
                    al ++ G  +++a++ +k+a+ d +  +++l +  + ++
     EGE26804.1 164 ALMNL-GYKEKEAQVAIKNAQSDAKNNTSDLLKAALRQL 201
                    55444.566788999999999999999999988888776 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0       0.2   2.3e+02      13      24 ..      75      86 ..      73      93 .. 0.83
   2 !   11.9   0.0    0.0002      0.23      15      27 ..     112     125 ..     109     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.2
     IMS_HHH 13 itkipGiGgklg 24
                + ki G+G k++
  EGE26804.1 75 LIKINGVGAKMA 86
                679*******97 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.0002
     IMS_HHH  15 kipGiGgklgek.L 27 
                  +pGiG+k++++ L
  EGE26804.1 112 RVPGIGKKTAQRiL 125
                 69*********977 PP

>> PG_binding_2  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       7.7   8.7e+03      39      54 ..      64      79 ..      56      85 .. 0.65
   2 ?   14.1   0.0     4e-05     0.044      19      46 ..     159     186 ..     151     201 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.7
  PG_binding_2 39 frealrdALrafiave 54
                  ++ + rd +r++i+++
    EGE26804.1 64 MDRHDRDIFRKLIKIN 79
                  4555566666666666 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4e-05
  PG_binding_2  19 eevqaaLsrLGyydgeaggafrealrdA 46 
                    ev++aL +LGy++ ea+ a+++a  dA
    EGE26804.1 159 AEVESALMNLGYKEKEAQVAIKNAQSDA 186
                   69******************99999887 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.056        63      22      43 ..      77      97 ..      70     112 .. 0.77
   2 ?    9.3   0.1    0.0015       1.6      22      38 ..     112     128 ..     105     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.056
  5_3_exonuc 22 GvpgiGektAakLlkeygslee 43
                 ++g+G+k A ++l++  s++e
  EGE26804.1 77 KINGVGAKMALAMLSTL-SVAE 97
                689***********986.4444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0015
  5_3_exonuc  22 GvpgiGektAakLlkey 38 
                  vpgiG+ktA+++l   
  EGE26804.1 112 RVPGIGKKTAQRILLDL 128
                 59*********987544 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.52   5.8e+02      16      28 ..      75      87 ..      72      92 .. 0.75
   2 ?   10.8   0.0    0.0004      0.45      15      31 ..     109     125 ..     107     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.52
       HHH_3 16 LqklpGlgpklAk 28
                L k++G+g+k+A 
  EGE26804.1 75 LIKINGVGAKMAL 87
                7788889988885 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0004
       HHH_3  15 eLqklpGlgpklAknIv 31 
                  L ++pG+g+k+A++I+
  EGE26804.1 109 ALVRVPGIGKKTAQRIL 125
                 68899999999999996 PP

>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.047        53       3      22 ..      74      93 ..      72     102 .. 0.84
   2 ?    7.8   0.0    0.0036         4       3      28 ..     109     135 ..     107     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.047
  Transposase_20  3 lLesipGiGpvtaaallaei 22
                     L  i G+G+ +a+a+l+++
      EGE26804.1 74 KLIKINGVGAKMALAMLSTL 93
                    5778*************987 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0036
  Transposase_20   3 lLesipGiGpvtaaallaei.gdlrrf 28 
                     +L  +pGiG+ ta ++l  + g+l++f
      EGE26804.1 109 ALVRVPGIGKKTAQRILLDLkGKLNEF 135
                     57789************9998888888 PP

>> HHH_7  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00024      0.27      32      71 ..      91     129 ..      82     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
                 HHHH-EEHHHHCT-HHHHGGGGGSTT--HHHHHHHHHHHH CS
       HHH_7  32 vnlvgvdvnkavankyeaallkyiaGlGprkatdllkklk 71 
                 + l   ++ +a++ +y+aal++ + G+G++ a+ +l  lk
  EGE26804.1  91 STLSVAEIKHAIETDYDAALVR-VPGIGKKTAQRILLDLK 129
                 5555669**********99886.9**********998887 PP

>> A1_Propeptide  A1 Propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.27       2      29 .]     111     139 ..     110     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
                    EEEEEEE---HHHHHHH.TT-HHHHHHH- CS
  A1_Propeptide   2 vRIPLkKvKSmRetLrE.kglLeeFLkeh 29 
                    vR+P    K+++++L + kg+L+eF + h
     EGE26804.1 111 VRVPGIGKKTAQRILLDlKGKLNEFGEMH 139
                    66666678*****************7766 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0       0.1   1.1e+02       2      34 ..      69      99 ..      68     108 .. 0.70
   2 ?    6.6   0.0    0.0079       8.9       7      23 ..     109     125 ..     103     152 .. 0.74
   3 ?   -3.0   0.0       8.3   9.3e+03      19      30 ..     162     173 ..     159     183 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.1
        Cdd1  2 rkalkelqdiPniGkalaedlvelGirsveelk 34
                r+ +++l +i ++G ++a     l   sv+e+k
  EGE26804.1 69 RDIFRKLIKINGVGAKMALA--MLSTLSVAEIK 99
                56778999*********954..34444444444 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0079
        Cdd1   7 elqdiPniGkalaedlv 23 
                 +l ++P+iGk++a+ + 
  EGE26804.1 109 ALVRVPGIGKKTAQRIL 125
                 6889*********9864 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 8.3
        Cdd1  19 aedlvelGirsv 30 
                  + l++lG+++ 
  EGE26804.1 162 ESALMNLGYKEK 173
                 567888998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1521.12
//
Query:       EGE26805.1  [L=345]
Description: fructose-1,6-bisphosphate aldolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-91  305.2   0.2    5.3e-91  305.0   0.2    1.1  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.0   0.2     3e-95   5.3e-91       2     279 ..       5     327 ..       4     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: 305.0 bits;  conditional E-value: 3e-95
                    HHHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHHH CS
  F_bP_aldolase   2 nlkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkaie 97 
                    +l++ll++A e+ y+++afnv+nle+++a++ aa +++sPvI+q+s ga++++  ga +l++l+ +a e+ +  ++pv++h DHg++ + +++ i+
     EGE26805.1   5 SLRQLLDHAGEHSYGLPAFNVNNLEQMRAIMMAADKTDSPVIVQASAGARKYA--GAPFLRHLILSAIEEWP--HIPVVMHQDHGTSPAVCQRSIQ 96 
                    789**********************************************9555..8*************999..9********************* PP

                    HS-SEEEE--T.......TS-HHHHHHHHHHHHHHHHHTT-EEEEE--------............---TT-TTTS--HHHHHHHHHHHH-EEEE- CS
  F_bP_aldolase  98 agfsSvMiDgS.......elpleeNialtkevverahalgvsvEaElGriggee............dgvvaeeklyTdpeeaeefveetgvdalAv 174
                     gfsSvM+DgS         ++e N+a+t+evv++aha+gvsvE+E+G++g+ e            +gv ++++l+T++eea +fv++t+vdalA+
     EGE26805.1  97 LGFSSVMMDGSlredgktPADYEYNVAVTREVVKMAHACGVSVEGEIGVLGSLEtgmageedgvgaEGVLDHSQLLTSVEEARQFVADTNVDALAI 192
                    ***********8777776679*********************************77777774444444466666********************** PP

                    -SS---SS--SS.......--THHHHHHHHHH..--SEE-SGTTS-HH.....................HHHHHHHTTEEEEEE-HHHHHHHHHHH CS
  F_bP_aldolase 175 aiGnvHGvykpk..pk...Ldferlkeiqkav..vplVlHGgsgvpde.....................eirkaiklGvvKiNidtdlrlaytkav 242
                    a+G++HG+yk++  p+   L ++r+kei++a+  +++V+HG+s+vp+e                     ++ +aik+Gv+KiNidtdlrla t av
     EGE26805.1 193 AVGTSHGAYKFTrpPTgdiLAIDRIKEIHEALpnTHIVMHGSSSVPQEwlkiinenggnigetygvpveQLVEAIKHGVRKINIDTDLRLASTGAV 288
                    ************865599**************9999************************************************************ PP

                    HHG....GE-HHH-HHHHHHHHHHHHHHHHHHHHHHTT-SS CS
  F_bP_aldolase 243 kke....kenkkydprkllkeaeeamkevvkekiellgsag 279
                    +k     +++  +dprk+l+++++am+e++  ++e +g+ag
     EGE26805.1 289 RKFlndhPAE--FDPRKYLTASMKAMEEICVARYEAFGAAG 327
                    8887643444..6*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2689.33
//
Query:       EGE26806.1  [L=96]
Description: entericidin EcnAB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00046   20.5   1.8    0.00076   19.8   1.8    1.4  1  LPAM_1          Prokaryotic membrane lipoprotein lipid attach
  ------ inclusion threshold ------
        2.5    6.8   5.1        2.6    6.7   5.1    1.0  1  Presenilin      Presenilin
        3.4    6.4   9.5        3.9    6.2   9.5    1.0  1  TraG_N          TraG-like protein, N-terminal region
        5.5    6.6  10.6        6.6    6.3   9.9    1.6  1  tRNA_anti-like  tRNA_anti-like


Domain annotation for each model (and alignments):
>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.8   1.7e-07   0.00076       1      18 []       1      18 [.       1      18 [. 0.99

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.7e-07
      LPAM_1  1 MKKillalgalllLsGCs 18
                MKKil a++++ lL++Cs
  EGE26806.1  1 MKKILPAAVFAILLAACS 18
                *****************9 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.1   0.00057       2.6     209     292 ..       3      88 ..       1      96 [] 0.31

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00057
  Presenilin 209 eifpaLiYsatvvvlaaeek.kaevaeseeeeeaekkkeeasesskeeesee.esseksaqsseseeeseeesseaessaeessee 292
                 +i+pa +++   ++++++++ +a++a+s+ +e+++++++  +++ +++++ + ++ e+ a+++++ +++  ++ ++ +++e+s+e 
  EGE26806.1   3 KILPAAVFAILLAACSQQTQdSASQAASSVAEDTKANATVVAQEAEAAAQATgNAVENAAETASNAAKNLGAAVNEVTANEQSAEA 88 
                 68888888888777765555322222222222222222222222222222220222222222221111111111111111111111 PP

>> TraG_N  TraG-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.5   0.00087       3.9     247     320 ..      15      86 ..       2      92 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00087
      TraG_N 247 a.fkdalsa.asqyltgvsssa.saediirqallinalkdgsqtlanlvdrsaaaaglaaasaalataqaeaqqnss 320
                 a ++++ ++ asq+ ++v++++ + + +++q + + a     q+++n+v ++a +a+ aa+++ +a+++++a+ +s+
  EGE26806.1  15 AaCSQQTQDsASQAASSVAEDTkANATVVAQEAEAAA-----QATGNAVENAAETASNAAKNLGAAVNEVTANEQSA 86 
                 1477777777888888888886443455555555544.....568899************99999999988877765 PP

>> tRNA_anti-like  tRNA_anti-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.9    0.0015       6.6       7      68 ..       3      63 ..       1      89 [. 0.68

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0015
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---HHHHHTS-..............EEEHHH CS
  tRNA_anti-like  7 kilviilivilllfvialvaqaaesardkekaekedadatlaeakakpeavaekasqisArd 68
                    kil ++++ ill++      q ++s+ ++++ae ++a+at+   +a+++a+a+   + +A++
      EGE26806.1  3 KILPAAVFAILLAACSQ-QTQDSASQAASSVAEDTKANATVVAQEAEAAAQATGNAVENAAE 63
                    45555555544444444.57777778788888888888888888888888888666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2706  (0.150929); expected 358.6 (0.02)
Passed bias filter:                      804  (0.0448435); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 729.86
//
Query:       EGE26807.1  [L=400]
Description: phosphoglycerate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-127  425.4   1.0   2.1e-127  425.2   1.0    1.0  1  PGK       Phosphoglycerate kinase


Domain annotation for each model (and alignments):
>> PGK  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.2   1.0  1.2e-131  2.1e-127       2     378 .]       7     387 ..       6     387 .. 0.94

  Alignments for each domain:
  == domain 1  score: 425.2 bits;  conditional E-value: 1.2e-131
                 GGS--TT-EEEEEE-----EECTTEES--HHHHHHHHHHHHHHHTT-EEEEEE--S--TT..S-GGG-SHHHHHHHHHHHTT-EEEESSTTSHHHHHHH CS
         PGK   2 kdldlkgkrvlvRvDfNvplkkegkitddtriraalpTikyllekgakvvllsHlgrpkg..ekeklslkpvaerLsellgkeVkfvedvvgeeveeai 98 
                 k ldl+gkrvl+R D+Nvp+k+ g+i +d r++aalpT+k +l kga+v ++sHlgrp +   ++k+sl+pva++Ls+ l+ +V+f  ++++      i
  EGE26807.1   7 KALDLAGKRVLIREDLNVPIKD-GVIASDVRLQAALPTLKDALAKGAAVLVASHLGRPTEgePDQKYSLAPVADYLSKHLDAPVRFEAEYLDG-----I 99 
                 6789****************87.***********************************775567**********************8777777.....3 PP

                 HT-TTT-EEEES-GGGSTTTTTT-HHHHHHHHHT-SEEEE--GGGTTS--TTTTHHHHCS.EE....EE-HHHHHHHHHHHHHHHS--SSEEEEEEES- CS
         PGK  99 aelkegevllLeNvrfykeEekndeelakklasladvyVnDAFgtahrahaStvgiakvl.sa....aaGllmekElealskvlenperplvailGGak 192
                  e++ ge++lLeNvrf+ +E+kn++el++ +a+l+d++V+DAFg+ahra+aSt+gi + + ++    + G l+ +El+als++l+np+ p++ai+GG+k
  EGE26807.1 100 -EVAVGELVLLENVRFNVGEKKNSDELSNAYANLCDIFVMDAFGAAHRAQASTEGIIRAAiEQgkqvCSGNLLTEELNALSRALDNPAAPVLAIVGGSK 197
                 .3566****************************************************9998334578******************************** PP

                 HHHCHHHHHHHTTT-SEEEEETCHHHHHHHHTT-B-TTSS--GGGHHHHHHHHHHHHHHT-EEE--SEEEEESS......S.....STTS.EEEECCG- CS
         PGK 193 vsdkikvienLlekvdkliigGgmantFlkaqgleigkslveedklelakellekakkkgvkillpvDvvvake......e.....aekeakvveveai 280
                 vs+k++v+++L++k+d++++gGg+antFl+a g+++g+sl+e+d +++ak++++k++     illp +vvva++      +     ++++a+v++v+++
  EGE26807.1 198 VSTKLDVLTSLAQKCDSIVVGGGIANTFLAATGVNVGASLYEPDLIDTAKQIMKKTN-----ILLPSEVVVADKneidfdDflgslERTAATVKPVDEL 291
                 *******************************************************86.....***********998877615565444448888***** PP

                 -TT-EEEEE-HHHHHHHHHHHCC-SEEEEES-SS-TTSGCCCHHHHHHHHHHHHHCHTSEEEEESHHHHHHHHHTT-GGGSSEEESSSHHHHHHHCTS CS
         PGK 281 pedemalDigpktielfaeaikeaktvvwnGpmGvfeiekfakGTkaiakalaeatkgalsivGGgdsaaaveklgladkvshvStGGgAsLelLegk 378
                 ++++m+lDi++++++++a++i++a t++wnGp+Gvfe++kf +GT+ +a a+++++   +si+GGgd++aa++k+++ad+vs++StGGgA+Le++egk
  EGE26807.1 292 NDTDMILDISKASADEIAKHIHKAATILWNGPVGVFEVDKFGTGTQVLAMAVKDSSG--FSIAGGGDTLAAIDKYQVADDVSYLSTGGGAFLEFVEGK 387
                 ******************************************************965..**************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2884.36
//
Query:       EGE26808.1  [L=281]
Description: diadenosine tetraphosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-12   45.9   0.0    1.3e-11   45.4   0.0    1.2  1  Metallophos    Calcineurin-like phosphoesterase
     0.0024   18.1   0.0      0.004   17.4   0.0    1.4  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
       0.11   10.8   0.0       0.15   10.3   0.0    1.2  1  FBPase_2       Firmicute fructose-1,6-bisphosphatase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   2.2e-15   1.3e-11       5     156 ..      13     169 ..      11     208 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 2.2e-15
                  EEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTS.....CHHHHHHHHHHHHHHHHHHHEH CS
  Metallophos   5 vigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHe.....gfeeellnkygylgifsepwrs 97 
                  vigDl+     g++ ++++ll+ l+ +e  d + laGD+v rg+ + ++l+  ++l +  + + ++lGNH+     +++  l +k +++++      +
   EGE26808.1  13 VIGDLQ-----GCFGAFNELLSALNFDETQDKLWLAGDIVARGEDSLATLREAKRLSDI-DALSTVLGNHDitliaTWRGVLTPKAKDKTLPIFEAPD 104
                  9*****.....*****************************************9999997.777*********99974343444554555544566666 PP

                  HHCEEETSEEEEEETTE.EEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC.....HHHHHH.HHH CS
  Metallophos  98 daevfnnlplaslgsgs.lkvlllhGg.spellvsldklgslnleleapepg.....dewlkd.lek 156
                  ++e +n+l  + l   + ++++l h+g +p++  s++++ ++ +ele + +g     d +l + ++k
   EGE26808.1 105 CDELLNWLRQQPLLVFPdDRTVLTHAGiPPNW--SITEAAGYAKELEKQLSGnlkqlDRLLPNlYRK 169
                  6555555555555555555********55555..888888888888877777777775555554333 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.7e-07     0.004       5      75 ..      13      91 ..      11     158 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.7e-07
  Metallophos_2  5 iiSDlHsnldaleavlealke.vgvdaiihaGDl...eeeepevleellela...pvlaVrGNnDeev..veedvlreaa 75
                   +i Dl + + a +++l+al+  ++ d++++aGD+   +e ++ +l+e+++l     + +V GN+D +   + ++    ++
     EGE26808.1 13 VIGDLQGCFGAFNELLSALNFdETQDKLWLAGDIvarGEDSLATLREAKRLSdidALSTVLGNHD-ITliATWRGVLTPK 91
                   6788887777777776665432446********9654444444555555555888**********.22233333333333 PP

>> FBPase_2  Firmicute fructose-1,6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.6e-05      0.15     184     230 ..      37      86 ..      13      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.6e-05
    FBPase_2 184 vdklhivGDiyDRGpeadkilde...LmkyhsvdiqWGNHDilWmGaaaG 230
                  dkl + GDi  RG+ +   l e   L +++ +    GNHDi+ +++  G
  EGE26808.1  37 QDKLWLAGDIVARGEDSLATLREakrLSDIDALSTVLGNHDITLIATWRG 86 
                 589*************999986511166666666899*****99887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2212.94
//
Query:       EGE26809.1  [L=284]
Description: dimethyladenosine transferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-59  201.1   0.0    1.8e-59  201.0   0.0    1.0  1  RrnaAD           Ribosomal RNA adenine dimethylase
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.21   11.2   0.0    1.2  1  NodS             Nodulation protein S (NodS)
       0.16   11.5   0.0        9.6    5.7   0.0    2.2  2  MTS              Methyltransferase small domain
       0.17   11.7   0.0       0.28   11.0   0.0    1.5  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.0   0.0     4e-63   1.8e-59       4     258 ..      15     271 ..      12     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: 201.0 bits;  conditional E-value: 4e-63
                 CXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CCGHHHHHHHCTTTCC CS
      RrnaAD   4 lrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls..kdeklkvvhqDflkfetpeevtekdsi 100
                  rk++gqnfl+++ +i +I+ ++ l  ++++leigpG G+lTe+L+  ++ ++v+Eld++La  l+ ++   +++  ++++ +++  +    ++  +  
  EGE26809.1  15 PRKRFGQNFLHDTHIISQIVTAIRLDRQDNLLEIGPGLGALTEPLLAEVDGMTVIELDRDLASQLKINIGanSHSDFTIINDNAMHVNYRALAE--QIG 111
                 599***************************************************************9887889***************999664..445 PP

                 CCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S. CS
      RrnaAD 101 hqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakveksifsPppkvdsalvelerkdedl. 198
                 +  f+vv+nlPy+ist++ ++lle s   +++m+++lqke++ r++a+p+sk+++rlsv++++++++  +++v+k +f Pppkv sa+ +l++ ++++ 
  EGE26809.1 112 KGVFRVVGNLPYNISTPILFRLLEFSDV-IKDMHFMLQKEVVDRITAEPNSKEYGRLSVIMQYYCQSDYLLTVPKGAFNPPPKVTSAVFRLTPYKTKPi 209
                 678********************86665.9***************************************************************999999 PP

                 --S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT...T--TTTCCCCSGHHHHHH CS
      RrnaAD 199 pqkdlkkyesvvrkllnrkrktlstslksllpggelqalsst..gindnalvkklsaeqtld 258
                    d +++  vvr+ +n +rktl++ +k ++    l+   ++  gin  a+ + l + +++ 
  EGE26809.1 210 TAMDESVFALVVRESFNHRRKTLRAIFKANGLLPTLDESDFEkiGINPSARPETLCVHEFVL 271
                 **************************999877666666666656777777666666666655 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.6e-05      0.21      43      94 ..      41      92 ..      19     105 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
        NodS 43 siadalevGcaaGalterlapyckrltvvdvveeaiararervkesshiswi 94
                +  + le+G   Galte l    + +tv+++  +  ++ +  +   sh  ++
  EGE26809.1 41 RQDNLLEIGPGLGALTEPLLAEVDGMTVIELDRDLASQLKINIGANSHSDFT 92
                45689*************************9888877777777777776554 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0021       9.6      26      83 ..      36      92 ..      27     121 .. 0.75
   2 ?    3.7   0.0     0.009        40      55     106 ..     206     258 ..     194     276 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0021
                HCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EE CS
         MTS 26 tlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.ve 83
                ++  ++++++l +G G G+l+  l++e + ++v  +d d +     k n+ an ++  +
  EGE26809.1 36 AIRLDRQDNLLEIGPGLGALTEPLLAEVDGMTVIELDRDLA--SQLKINIGANSHSdFT 92
                555567889******************99976666666554..4566666666665444 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.009
                 C.EEEEEESBHHHHHHHHH.HHHHTTGCEEEEE-STTTTSTTS-EEEEEE--- CS
         MTS  55 eaevtlvdvdarAlesake.nleanklevevvasdvleeveekkfdlivsNPP 106
                 +  +t++d++  Al + +  n +++ l++ + a+ +l +++e +f+ i  NP 
  EGE26809.1 206 TKPITAMDESVFALVVRESfNHRRKTLRAIFKANGLLPTLDESDFEKIGINPS 258
                 34499********9887643778888889999999999*************96 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.1e-05      0.28      19      61 ..      38      80 ..      17     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.1e-05
  Methyltransf_23 19 klraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae 61
                     +l+++ ++L+iG+G G l+e l +++  +t+++l++ + + ++
       EGE26809.1 38 RLDRQDNLLEIGPGLGALTEPLLAEVDGMTVIELDRDLASQLK 80
                     378999****************999999999999887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2223.02
//
Query:       EGE26810.1  [L=386]
Description: 4-hydroxythreonine-4-phosphate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-92  308.5   1.5    4.9e-92  308.3   1.5    1.1  1  PdxA      Pyridoxal phosphate biosynthetic protein PdxA


Domain annotation for each model (and alignments):
>> PdxA  Pyridoxal phosphate biosynthetic protein PdxA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.3   1.5   2.8e-96   4.9e-92      36     282 .]     122     375 ..      61     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: 308.3 bits;  conditional E-value: 2.8e-96
                 TEEEEEE.S..BTTB--HHHHHHHHHHHHHHHHHHHTTSSSEEEE----HHHHHHTT--......-SSHHHHHHHHTTSSGSEEEEEETTEEEEESS-S CS
        PdxA  36 eelkvldve.veagkvsaesGaaalaslekAvelakegevdalvtaPinKeaikaaglk......fpGhtellaeltgtkkvvmmlaseeLrvalvTth 127
                   l+++ ++ v ag+++ +++a++ + l+ A  lak ++++a++taPi+K+++ +ag+       f+Ghte++ ++ +++kvvmmla++ ++valvTth
  EGE26810.1 122 IVLNIICCDeVIAGQLNTANAAMVERQLHLAHVLAKMHQIRAIITAPIQKSVMIQAGICldngdiFSGHTEYFMHKSNCHKVVMMLANRVMKVALVTTH 220
                 34456555468*********************************************8733345559********************************* PP

                 S-GGGHHHH--HHHHHHHHHHHHHHHHHTTT.SSSEEEEE-SSGGGGTTTTTSSHHHHTHHHHHHHHHHCTHEEEEEE-HHHHTSHHHHTT-SEEEESS CS
        PdxA 128 ipLkevakaitkerllevlrllakalkrdfgiekpriaVaGLNPhaGenGllGrEEeeiiepaiekaraegievegplpaDtlFtkaalkkydavvamY 226
                 +pLk++ +ait+++++e++r++++ l ++fgi +p+i+V+GLNPhaGe+G+lG+EE+ ii+pa++ + aegi+++  +paDtlFt+++l+++dav+amY
  EGE26810.1 221 LPLKDIFDAITANEIQETIRITHQGLVTQFGILSPKILVCGLNPHAGEDGHLGDEEICIINPALKVLMAEGINISYAMPADTLFTPQHLADCDAVIAMY 319
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHTTTEEEEEESSSSEEEEESS-S-TTCTTTT---THHHHHHHHHH CS
        PdxA 227 HDqgliplKllafdegvnvtlGLpiirtSvDhGtafdiagkgkadekSlleAiklA 282
                 HDqgl+plK  +f+++vn+tlGLp++rtSvDhGta+d+ag+g+a+++Sl++Ai +A
  EGE26810.1 320 HDQGLAPLKSHGFGDTVNITLGLPYVRTSVDHGTALDLAGTGRASSSSLKQAIFYA 375
                 *****************************************************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2769.91
//
Query:       EGE26811.1  [L=505]
Description: replicative DNA helicase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-99  331.0   0.0    6.4e-99  330.4   0.0    1.3  1  DnaB_C    DnaB-like helicase C terminal domain
    3.1e-26   91.5   0.3    7.6e-26   90.2   0.3    1.7  1  DnaB      DnaB-like helicase N terminal domain
    1.5e-11   44.3   0.0    2.7e-11   43.4   0.0    1.4  1  AAA_25    AAA domain
     0.0022   17.4   0.0     0.0068   15.8   0.0    1.8  2  ATPase    KaiC


Domain annotation for each model (and alignments):
>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.4   0.0  1.4e-102   6.4e-99       1     255 []     235     491 ..     235     491 .. 0.97

  Alignments for each domain:
  == domain 1  score: 330.4 bits;  conditional E-value: 1.4e-102
                 SBXSSTHHHHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHTTSXHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   1 GlstgfkdLDkltsGlqkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqRllsseaeidskklrtgklkeedweklteaieel 99 
                 Gl+tgf +L++ t G+q+g+lii+Aarp+mGktalaln+a++a + +++ va+fs+em+ae++++R+l++ ++id+k+l +++++e++w ++++ ++ l
  EGE26811.1 235 GLDTGFIELNNKTLGFQNGNLIILAARPAMGKTALALNFAQSALM-SNKAVAIFSMEMPAESIAMRMLAAWGSIDMKRLMSANMNEDEWGRFMNGVTLL 332
                 99***************************************9997.6779************************************************* PP

                 HHSEEEEEEXSSXCHHHHHHHHHHHHHH..TTEEEEEEEEGGGTBTSCSSSCCCHHHHHHHHHHHHHHHHCTSXEEEEEEXSGGGCCSCCHSXXHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 100 seaklfiddtpaltvseirskarrlkke..kglgliviDyLqlmegseekenreqevseisrsLkalakelnvpvialsqLsravesredkrPvlsDLr 196
                 ++ +l+idd+++l++seir+ +rr++k+  +glg+++iDy+qlm++++  +n+++e+ eisrsLkala+eln+pv+alsqL+r+ve r +krP +sD+r
  EGE26811.1 333 QDKHLYIDDRSDLSPSEIRATCRRIAKNhpDGLGFVLIDYMQLMRVPGMGDNKVNEMGEISRSLKALARELNCPVVALSQLNRKVEDRPNKRPLISDIR 431
                 *************************999899**************997799************************************************ PP

                 CTTSCCCCXSEEEEEEECCHHHHHH.CHHCEEEEEEEEETTSXXEEEEEEEETTTTEEEX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 197 eSgsieqdADvvlflyrdeyykeds.eekgkaeiiiaKhRnGptgtvklafekeytrFen 255
                 eSg+ieqdAD++lf+yr++yy++d+ + k+ ae+ii K+R+G+ g+v l+f +ey+rF++
  EGE26811.1 432 ESGQIEQDADLILFVYRHHYYHQDKdDIKHLAEVIIGKNRQGERGKVPLKFIGEYVRFDD 491
                 **********************8874567789**************************86 PP

>> DnaB  DnaB-like helicase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.3   1.7e-29   7.6e-26       1     103 []      54     156 ..      54     156 .. 0.99

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 1.7e-29
                 HHHHHHHHHHHHHHHHHHSTTHHHHHHCC--GGGSSSHHHHHHHHHHHHHHHTTTS-SHHHHHHHSCSSS-GGHGT.HHHHHHHHHC-S-CCCHHHHHH CS
        DnaB   1 eppqsieaEqavLgalLldpeaidevadilkpedFyepahrliFeailelyekgepiDlvtvkeelekkgkledvggaaylaelvaavpsaanieeyae 99 
                 +pp+sie+E+++L++l+  +++++++ +i++++dFy ++h++iF+ai++l++ +ep D ++v+++l++ g+l ++gg++yl+++ +++++  n+ +yae
  EGE26811.1  54 QPPHSIEMERSLLASLMSINDSFEDIENIINANDFYGERHKKIFDAISHLARVNEPYDSIMVHDYLSRIGQLVSAGGEDYLITINQSTANYFNLINYAE 152
                 69************************************************************************************************* PP

                 HHHH CS
        DnaB 100 ivke 103
                  v+e
  EGE26811.1 153 KVRE 156
                 **97 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0     6e-15   2.7e-11      32     190 ..     252     414 ..     247     418 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 6e-15
      AAA_25  32 agelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal..........rddarllvldlagv.eslpLfak 119
                  g l++la++p+ GKt+lal+ a + +            + +V + s E++++ ++ R+ a+   +          ++d++ +++++++  ++ +L+ +
  EGE26811.1 252 NGNLIILAARPAMGKTALALNFAQSALM----------SNKAVAIFSMEMPAESIAMRMLAAWGSIdmkrlmsanmNEDEWGRFMNGVTLlQDKHLYID 340
                 6899********************9994..........3449**************9999877666669999999999*******************98 PP

      AAA_25 120 drggtlltadvdaleaaieeveg..vrlvviDplsralgg..densnsdvgalvealeriarrtgaavllvhHvg 190
                 dr +   +++++a  ++i + +   +++v iD ++ +     + n+ +++g++   l+ +ar++++ v+++ +++
  EGE26811.1 341 DRSDLS-PSEIRATCRRIAKNHPdgLGFVLIDYMQLMRVPgmGDNKVNEMGEISRSLKALARELNCPVVALSQLN 414
                 877766.677777777777765569*******988754333699999**********************998876 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         1   4.5e+03      52     113 ..      18      81 ..      17     109 .. 0.51
   2 !   15.8   0.0   1.5e-06    0.0068       9      68 ..     237     301 ..     229     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1
      ATPase  52 vfvtveepaedlrenakslGwdlekleeegk.laiidasesaeesaee...kdkedleelieelae 113
                 +f+++  +++ l+   ++   d+++ +++   l  ++  +s e   e+    + ++++   e++++
  EGE26811.1  18 LFIAITKHKSYLYDLLHKPNTDMTNTNDKKDsLLTLQPPHSIEM--ERsllASLMSINDSFEDIEN 81 
                 57777777777777777777777776665320222222222222..22123333333333333333 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.5e-06
      ATPase   9 Deilk......gGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenak 68 
                 D+ +        G+ +g+ + ++  p  GKt +al+F+ + +++ ++++ + ++e pae++  ++ 
  EGE26811.1 237 DTGFIelnnktLGFQNGNLIILAARPAMGKTALALNFAQSALMS-NKAVAIFSMEMPAESIAMRML 301
                 444422444448**************************999999.**************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3495.92
//
Query:       EGE26812.1  [L=380]
Description: alanine racemase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-51  175.7   0.0    1.3e-51  175.4   0.0    1.1  1  Ala_racemase_N  Alanine racemase, N-terminal domain
    1.1e-36  125.4   0.5    2.2e-36  124.4   0.5    1.5  1  Ala_racemase_C  Alanine racemase, C-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4   0.0   1.4e-55   1.3e-51       1     219 []       8     229 ..       8     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 1.4e-55
                     EEHHHHHHHHHHHHHHSCTTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTS....CSEEEEESC.STGGGHHHHHHTTE CS
  Ala_racemase_N   1 idldalrhNlrrlralagpgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagi....tapilvleg.fspeelaalaeydl 90 
                     i+ +al+hNl+ +++ ++p +k++a+vKa+ayghg+   ++al  + adgfgva+l+Ea ++++       ++pi+++eg fs +e + ++++d+
      EGE26812.1   8 IHPNALTHNLQIIKSQLDPTTKVLAMVKADAYGHGIDATVPALI-H-ADGFGVACLSEAMAVKQVLDgmnhKKPIVLIEGaFSLDEWKVAIDHDF 100
                     7889*************99**********************999.7.9************988764355779*********************** PP

                     EEEESSHHHHH.HHHHHHHHTTS-EEEEEEBESSSSSSSBSCHHHHHHHHHHHHTTTEEEEEEE-S-SSTTSTSHHHHH.HHHHHHHHHHHHHHT CS
  Ala_racemase_N  91 tvtvdsleqle.alaaaareagkplrvhlkidtgmgRlGftpeeleellealaalpglrleglmtHfasadepdeetea.qlarfeealeeleka 183
                      +++++++ql  al++  ++ +  ++++lk +tgm+RlGf ++ + ++++ la++ g rl  l++Hfa+ad++ ++ +a q+++f++al+ ++ +
      EGE26812.1 101 GCLIHHENQLIwALSHRPKQDQFCHTIWLKYNTGMSRLGFNDDHIITAAKSLADA-GYRL-ILTSHFACADDKSHPLNAqQISKFDQALACIR-S 192
                     **********62666777779999****************************996.4555.589*******988888887************8.4 PP

                     TGGGSEEEEESHHHHHHSG.GGTTEEEESGGGGT-SS CS
  Ala_racemase_N 184 glrppvvslanSaaillaa.ahfdmvRpGialyGlsp 219
                       ++++ sl+nSa+i++++  h+d+vR+GialyG  p
      EGE26812.1 193 FAPDTLASLCNSAGIFNFKhQHHDWVRAGIALYGSKP 229
                     47779*************6478************876 PP

>> Ala_racemase_C  Alanine racemase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.5   2.5e-40   2.2e-36       1     123 [.     243     368 ..     243     369 .. 0.92

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 2.5e-40
                     SEEEEEEEEEEEEESTTSEESGGGSEE-SSSEEEEEES--GGGTCGGGGT.TEEEE.....TTEEEEEESEE-SSEEEEEECTSTT--TT-EEEE CS
  Ala_racemase_C   1 vmtlkarviqvkevkagegvgYgatyvaerdtriavvpiGYaDGlprals.gevli.....ngkrvpvvGrvcMDqlmvdlteveevkvgdevvl 89 
                     +mtl+a+v+++++++ag+++gY+a + a+++ +iavv+iGY+DG+pr +  ++v +     n + + ++Grv+MD++m+d++   ++++++ vvl
      EGE26812.1 243 AMTLSAQVMAIHTLAAGDSIGYSALWAAQKPHQIAVVSIGYGDGYPRVVMgAKVSVtdtsgNRHLCDIIGRVAMDMFMIDIDG-LDIAINTPVVL 336
                     79*********************************************766368888666556789****************86.5699******* PP

                     EEETEEEEHHHHHHHHTSEHHHHHHTSHTTSEEE CS
  Ala_racemase_C  90 lgegeeitveelaeaagtisyeiltrlskrvprv 123
                     +g+  ++t++e+a  agti ye+++rl++r +r 
      EGE26812.1 337 WGD--SPTIDEVAMCAGTIGYELMCRLTTRPKRC 368
                     **8..8************************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2968.41
//
Query:       EGE26813.1  [L=252]
Description: mltA-interacting MipA family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-46  159.1   7.3    2.2e-46  158.8   7.3    1.0  1  MipA      MltA-interacting protein MipA
  ------ inclusion threshold ------
      0.037   13.2   0.2      0.064   12.5   0.2    1.4  1  BBP7      Putative beta barrel porin-7 (BBP7)


Domain annotation for each model (and alignments):
>> MipA  MltA-interacting protein MipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   7.3   2.4e-50   2.2e-46       1     213 []      33     252 .]      33     252 .] 0.92

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 2.4e-50
        MipA   1 lGagagygps.ypgsddyellllPllfyegenfyldglsdggynlletdnfrlglslslslesgrdesda........lgdrktsleaGlfaeyrtqvg 90 
                 lG+ a+y+   y+ +d  +++++P  fy+++++y++g++ +g++ ++++++++ +   l++++++ + ++        l++r++s+ a +++ y t++g
  EGE26813.1  33 LGVNATYNATaYHAKD--PIFVMPQAFYDNNRWYIEGAE-AGFYPYKDNKHHVRIG--LTYDGQSFDPNHanaielkqLNKRQWSALAHASYLYITPYG 126
                 799*******997766..89*****************86.8********9999999..999999777777789999999****************9999 PP

        MipA  91 llr...ladvsgahkGaea.lsasfsl.sgrwtlspgaglsyasskyndyyYGVsaaeaaasglpaYkagaglssvglglgasyrpltenwsllasasy 184
                  l+   ++dv+++h+G+++ ls+  ++ +++wt++p++g++++s++yn+yyYG+ +aea++++  aY+a++g+s++ ++++++y+ +t+++s++++ ++
  EGE26813.1 127 GLKakaATDVLDRHDGQTVtLSHLSRFnKDAWTVYPEFGATWHSKDYNQYYYGILDAEALKTNHTAYQADSGWSPF-VTATVNYQ-VTPKVSAFVNQRI 223
                 97778866********99997755555679******************************99879***********.*******6.************* PP

        MipA 185 trlsseiadSPlvesdnqvtaglgvaYrF 213
                 ++ls++ ++SP+++++   ++ lg++Y+F
  EGE26813.1 224 EWLSNAQKNSPMTDNKIDSKTRLGLNYHF 252
                 ****************************9 PP

>> BBP7  Putative beta barrel porin-7 (BBP7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   7.1e-06     0.064     255     314 ..     185     243 ..     165     249 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.1e-06
        BBP7 255 aqstnigtysrdeFsvvpeldlslgyhvtqnlsvtvgYsllylsdvvragdqiDrnvnta 314
                 a +tn ++y++d+ ++ p +  +++y+vt+++s++v   + +ls++ + +   D++++ +
  EGE26813.1 185 ALKTNHTAYQADS-GWSPFVTATVNYQVTPKVSAFVNQRIEWLSNAQKNSPMTDNKIDSK 243
                 567******9998.999*********************************9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1862.00
//
Query:       EGE26814.1  [L=158]
Description: bacterioferritin [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-28   99.6   2.6    1.6e-28   99.4   2.6    1.0  1  Ferritin  Ferritin-like domain


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   2.6   8.9e-33   1.6e-28       2     141 ..       9     143 ..       8     144 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 8.9e-33
                 HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHHC-SSSSCS.SHHHHHHHHHHHHHHHHHHH CS
    Ferritin   2 kaLneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraeleeieapkefg.sveevleaalehekkvtesl 99 
                  aLn  l   l a++qy+ +a+  k++g  +l+e f++q+++e++  d+l+eril l+g p+l++     i      g +v e+l ++l++ek   + l
  EGE26814.1   9 RALNLVLGQSLIAINQYFLHARITKNWGVHELNEVFYKQSIQEMKWSDELIERILLLEGLPNLQDLGKLLI------GeDVAEILVCDLKLEKRKHDIL 101
                 69********************************************************************9......88******************** PP

                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin 100 relielaeeegDpatadfledfleeqeeheweleallekler 141
                  e+i ++e+++D++++++l ++ +e+ee e++l ++ e +e 
  EGE26814.1 102 VEAIGICEDHRDYVSREILVKLKDENEEYEDWLTTQQELIED 143
                 ************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1231.76
//
Query:       EGE26815.1  [L=164]
Description: bacterioferritin [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-32  112.8   1.3    1.4e-32  112.6   1.3    1.1  1  Ferritin  Ferritin-like domain


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   1.3   7.9e-37   1.4e-32       1     142 []       8     144 ..       8     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 7.9e-37
                 HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHHC-SSSSCS.SHHHHHHHHHHHHHHHHHH CS
    Ferritin   1 ikaLneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraeleeieapkefg.sveevleaalehekkvtes 98 
                 i+ Ln +l  el a  qy+ +a ++ ++ + +l   +++++++e++ha+ l++ril+lGg+p+++  e++        g +v+++l+ +le+e+ v e+
  EGE26815.1   8 IDYLNFLLGGELGARDQYFIHAQMYAEWSFGKLYDRIYHEMQDETGHAQLLIQRILMLGGKPNMQVGEIQI-------GsDVPSMLKSDLELEYRVQEH 99 
                 678***************************************************************99998.......66******************* PP

                 HHHHHHHHHHTT-HHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin  99 lrelielaeeegDpatadfl.edfleeqeeheweleallekleri 142
                 l+e+i+l+e+e+D++t+d+l  ++ +++++h+++le++l+ ++++
  EGE26815.1 100 LKEGIALCETERDYVTRDILvRQLEDTEQDHAHWLEKQLRLIDLM 144
                 ********************6677777************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1357.64
//
Query:       EGE26816.1  [L=64]
Description: putative bacterioferritin-associated ferredoxin [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-11   43.0   2.8    4.8e-11   42.8   2.8    1.1  1  Fer2_BFD  BFD-like [2Fe-2S] binding domain
  ------ inclusion threshold ------
       0.09   12.7   0.7       0.13   12.2   0.7    1.3  1  DUF5363   Family of unknown function (DUF5363)


Domain annotation for each model (and alignments):
>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   2.8   5.4e-15   4.8e-11       1      51 []       2      51 ..       2      51 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 5.4e-15
    Fer2_BFD  1 iVCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLae 51
                +VC C++v + +I+ a  + g++ ++++++ + +gt Cg C+p+++++++e
  EGE26816.1  2 YVCICHDVKDSQIKTAL-SSGVSGMKGLQESLSVGTCCGCCVPMVQDLIDE 51
                7****************.999***************************986 PP

>> DUF5363  Family of unknown function (DUF5363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   1.4e-05      0.13      25      38 ..      32      46 ..      29      56 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
     DUF5363 25 vdkgaCRgC.vPvvk 38
                ++ g+C gC vP+v+
  EGE26816.1 32 LSVGTCCGCcVPMVQ 46
                678*****77***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 509.01
//
Query:       EGE26817.1  [L=473]
Description: L-serine ammonia-lyase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-99  330.7   8.1      9e-99  330.4   8.1    1.1  1  SDH_alpha  Serine dehydratase alpha chain
    3.2e-53  180.2   0.1      9e-53  178.8   0.0    1.7  2  SDH_beta   Serine dehydratase beta chain
  ------ inclusion threshold ------
       0.26    9.8   4.9       0.45    9.0   4.9    1.3  1  MmgE_PrpD  MmgE/PrpD family


Domain annotation for each model (and alignments):
>> SDH_alpha  Serine dehydratase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.4   8.1  1.5e-102     9e-99       2     260 .]     183     448 ..     182     448 .. 0.96

  Alignments for each domain:
  == domain 1  score: 330.4 bits;  conditional E-value: 1.5e-102
   SDH_alpha   2 kgleilelvteneeeaakrlsaeeidakleeiwevmdeaieeglsnkaiaeegllpgelkvkr.ayaalgkrl..............ldklsaaAlava 85 
                 ++l+i++l+++ne +a++    ++++a+l+++w++m++++++g++      +g+lpg+l+vkr a + l+++l              +d+++++Alav+
  EGE26817.1 183 HDLSIADLMLANE-TALRD--IDDVKAYLNDVWDTMQACVTQGCK----V-DGILPGGLNVKRrA-KDLYEQLskeygysgnggllaMDWVNLYALAVN 272
                 789********99.88855..7**********************8....4.9**********978.*******8888888888887779********** PP

   SDH_alpha  86 emnaaggrvvtaptsGaaGilPavlvalleelkas..eellraLllaaligilikrnasisgAecGcqaevGvacamAAaglaallggspeqienAaei 182
                 e+naagg+vvtapt+GaaGi+Pavl+++   + a+  + ++++Ll+a++ig lik+nasisgAe+Gcq+evG+acamAAagla +lggs++q++nAaei
  EGE26817.1 273 EENAAGGKVVTAPTNGAAGIIPAVLHYYRGFIPAFsyQGVREFLLVAGAIGALIKQNASISGAEVGCQGEVGSACAMAAAGLAHVLGGSVAQCLNAAEI 371
                 ***************************99988887**************************************************************** PP

   SDH_alpha 183 alehllGltCDpvaGlvkipCiernalgavkAvtaarlalagdggegivsldevietmrntgkdmsekyketseggLa 260
                 +leh+lGltCDp+aGlv++pCierna++ vkA++aarlal+gdg ++ vsld++i+tm++tg dm +kyket++ggLa
  EGE26817.1 372 GLEHNLGLTCDPIAGLVQVPCIERNAMASVKAINAARLALRGDG-SHHVSLDKAIATMKETGMDMMDKYKETAKGGLA 448
                 ******************************************99.*******************************97 PP

>> SDH_beta  Serine dehydratase beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.8   0.0   1.5e-56     9e-53       1     154 [.       3     152 ..       3     153 .. 0.97
   2 ?   -1.8   0.0      0.62   3.7e+03      66     105 ..     371     422 ..     349     459 .. 0.52

  Alignments for each domain:
  == domain 1  score: 178.8 bits;  conditional E-value: 1.5e-56
                 XXXXXXXXXXXXX-TTTHHHHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHHHS-TTSSHHHHHHHHHTT--TTTS-GGGHHHHHHHHHHHTEEEETTT CS
    SDH_beta   1 SvfdlfkiGiGPSSShTvgpmraaaaFveelkekelleevarirveLyGsLaatgkghgtdeAvllGLegeepetvdpdavesrleeieeekklklage 99 
                 Svf+lfkiGiGPSSShTvgpm aa++F+  l +   +++v++i++eLyGsL+ tgkgh+td+A+llGL+g+ep t+d++++e+ l+ i +e++l l+g+
  EGE26817.1   3 SVFELFKIGIGPSSSHTVGPMVAANRFLVLLGD--RMDSVRQITIELYGSLSSTGKGHATDTAILLGLSGHEPPTIDTTRTEEYLKPIYQEGRLMLGGT 99 
                 9*****************************986..799************************************************************* PP

                 EEEE--HHHHEEEETT---SS-SSEEEEEEE-TTS-EEEEEEEEEETTTEEEETT CS
    SDH_beta 100 keiefdeeedivlekkkslplhsnglelsaldeegellleetyySiGGGfiveee 154
                 ++i+fd +e+++++++  lp+h+ng++l a+ ++g + l +tyyS+GGGfi +e+
  EGE26817.1 100 HQIAFDANEHLLWDDT-PLPEHPNGMKLIAILDDG-EQLAQTYYSVGGGFIKDEQ 152
                 *************997.9*************9999.66899**********9986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.62
                 HHHTT--TTTS-G...........GGHHHHHHHHHHHTEEEETT..TEEEE-- CS
    SDH_beta  66 lGLegeepetvdp...........davesrleeieeekklklag..ekeiefd 105
                 +GLe +   t+dp           +++ + +++i++  +l l+g  ++++++d
  EGE26817.1 371 IGLEHNLGLTCDPiaglvqvpcieRNAMASVKAINA-ARLALRGdgSHHVSLD 422
                 555555555555544444444333222222333322.2233333112233222 PP

>> MmgE_PrpD  MmgE/PrpD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.9   7.5e-05      0.45     155     227 ..     349     422 ..     318     444 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 7.5e-05
                 HHHHHHHHHTT--HHHHHHHHHHHHCT-B-BSGGGSTTT--CHH.CHHHHHHHHHHHHHHHHHTT---TTTTT- CS
   MmgE_PrpD 155 gaaaaaakLlgLdaeqianAlgiaatqaaglrqyrhagtkskkl.waaGdAarnGveaallAkrGftGpsdile 227
                  aaa+ a+ lg +++q+ nA  i + ++ gl +   ag  +  +    ++A+ ++++aa lA rG  + +  l+
  EGE26817.1 349 MAAAGLAHVLGGSVAQCLNAAEIGLEHNLGLTCDPIAGLVQVPCiERNAMASVKAINAARLALRGDGSHHVSLD 422
                 4788899**************************999999999999********************776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3727.17
//
Query:       EGE26818.1  [L=134]
Description: hypothetical protein EA1_05022 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-18   66.4   0.0    2.6e-18   65.9   0.0    1.2  1  DUF4377   Domain of unknown function (DUF4377)


Domain annotation for each model (and alignments):
>> DUF4377  Domain of unknown function (DUF4377)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   1.4e-22   2.6e-18       1      75 []      49     129 ..      49     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 1.4e-22
     DUF4377   1 tVasekvecs......gvgpaqclqvkeesygeWeefygqIeGftyekgyeyvLkVkrtelanppaDassykYeLievisk 75 
                 ++a++k+ c+      ++ +a+clq++++ +++++ + g+IeGf+ye+g++yvL++k+++l n+ + +   k++L+++isk
  EGE26818.1  49 EIAPRKAVCEltnnlgETVQAECLQYRRTFDRNFNVLSGDIEGFQYEPGFRYVLDLKQERLLNETTGQVVPKWTLNKIISK 129
                 699***********999999************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1133.72
//
Query:       EGE26819.1  [L=69]
Description: hypothetical protein EA1_05027 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 624.57
//
Query:       EGE26820.1  [L=283]
Description: bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-61  205.6   0.6    3.3e-61  205.3   0.6    1.1  1  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
    3.5e-39  133.7   0.0    4.9e-39  133.2   0.0    1.2  1  THF_DHG_CYH    Tetrahydrofolate dehydrogenase/cyclohydrolase,
    0.00048   19.5   0.1    0.00085   18.7   0.1    1.4  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.032   13.7   0.2      0.057   12.9   0.2    1.4  1  adh_short      short chain dehydrogenase
      0.078   12.8   0.0       0.15   11.9   0.0    1.4  1  SUB1_ProdP9    SUB1 protease Prodomain ProdP9


Domain annotation for each model (and alignments):
>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.3   0.6   9.2e-65   3.3e-61       5     159 ..     127     280 ..     123     281 .. 0.98

  Alignments for each domain:
  == domain 1  score: 205.3 bits;  conditional E-value: 9.2e-65
                    HHHHHTT--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GGGS-T CS
  THF_DHG_CYH_C   5 lgrlvkgeeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelikaemvke 100
                    +gr+ +ge+a+ +ctp+g+++ll+++gielegk++vvvGrs i+gkp+a++Ll++n+tVt+chs+tk+lae++ +adivv avG+pelik++++k+
     EGE26820.1 127 FGRMSMGESAYGSCTPQGIMHLLTHYGIELEGKHAVVVGRSAILGKPMAMMLLNANCTVTICHSRTKNLAEYLASADIVVGAVGVPELIKKSWIKQ 222
                    79********************************************************************************************** PP

                    T-EEEE---EEC-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHHCH CS
  THF_DHG_CYH_C 101 gavviDvGinrvekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaakrq 159
                    gavv+D G++ + ++  +G ++ + ++++asa+tPvpgGVGpmT+ +l+++t+eaa+++
     EGE26820.1 223 GAVVVDAGFHPT-DQGGCGGIELDGIEAIASAYTPVPGGVGPMTINTLIRQTVEAAEKE 280
                    ************.8999***************************************985 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   1.4e-42   4.9e-39       1     116 []       4     120 ..       4     120 .. 0.99

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 1.4e-42
                  E--HHHHHHHHHHHHHHHHHHHHHH.T---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-S CS
  THF_DHG_CYH   1 lldGkalakeireelkeeveklkek.gvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlp 97 
                  +ldGkalak+i++el+ +ve+lk+k g++p La+ilvgddpas++Yvr+k +ac++vG++s  +++p+d++++ell++i+eln++++v+Gil+q+P+p
   EGE26820.1   4 VLDGKALAKSIESELSVRVETLKQKtGRTPILATILVGDDPASATYVRMKGNACQRVGMDSMRVDMPKDTTTDELLAKIDELNDNPDVHGILLQHPVP 101
                  59*********************97799********************************************************************** PP

                  TTS-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH  98 khidekaileaispeKDVD 116
                   +ide+a++++is +KDVD
   EGE26820.1 102 TQIDERACFDRISLDKDVD 120
                  ******************9 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   2.4e-07   0.00085      75     134 ..     185     239 ..     159     244 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.4e-07
                  CEEHCHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS-TTEEEEETT...GGGT-S CS
  AlaDh_PNT_C  75 vevlksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMkpgsVivDvA...idqGGn 134
                  v++ +s  ++lae +++ad+v+g+v +     P L++++ +   k+g+V+vD     +dqGG+
   EGE26820.1 185 VTICHSRTKNLAEYLASADIVVGAVGV-----PELIKKSWI---KQGAVVVDAGfhpTDQGGC 239
                  6778999*****************987.....79****987...67******97333579999 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   1.6e-05     0.057       1      42 [.     159     200 ..     159     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevak 42 
                 k+++v+G s+ +G+ +a  l++++++v+++ ++ ++l+e ++
  EGE26820.1 159 KHAVVVGRSAILGKPMAMMLLNANCTVTICHSRTKNLAEYLA 200
                 79***************************9999999988766 PP

>> SUB1_ProdP9  SUB1 protease Prodomain ProdP9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.2e-05      0.15      27      65 ..      48      86 ..      36      92 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.2e-05
  SUB1_ProdP9 27 sfleskGklanlknlksiiielkedttdeelieyikile 65
                 ++++ kG+ +    ++s+ +++ +dtt +el+  i+ l+
   EGE26820.1 48 TYVRMKGNACQRVGMDSMRVDMPKDTTTDELLAKIDELN 86
                 68999**************************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2454.99
//
Query:       EGE26821.1  [L=766]
Description: ATP-dependent Clp protease ATP-binding subunit ClpA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-50  170.4   0.0    9.4e-47  159.3   0.0    2.5  2  AAA_2            AAA domain (Cdc48 subfamily)
    6.5e-28   96.7   1.0    2.3e-27   94.9   1.0    2.1  1  AAA_lid_9        AAA lid domain
    1.5e-25   90.2   0.2    1.7e-11   44.7   0.0    3.1  3  AAA              ATPase family associated with various cellul
    1.4e-21   76.3   0.0    4.6e-21   74.7   0.0    2.0  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    9.1e-18   64.6   0.0    8.3e-12   45.3   0.0    2.9  2  AAA_5            AAA domain (dynein-related subfamily)
    3.3e-13   49.5   0.4      2e-11   43.8   0.1    2.9  2  Clp_N            Clp amino terminal domain, pathogenicity isl
    1.1e-11   45.4   2.0      7e-05   23.3   0.0    4.7  4  AAA_16           AAA ATPase domain
    2.6e-09   37.0   0.0    9.1e-05   22.2   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
    1.1e-07   31.5   0.0    0.00048   19.6   0.0    3.6  2  TniB             Bacterial TniB protein
    6.6e-07   28.9   0.1       0.14   11.5   0.0    3.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.8e-06   28.2   2.3       0.11   12.8   0.4    4.6  2  AAA_22           AAA domain
    3.7e-06   27.5   0.0       0.22   12.1   0.0    3.8  3  AAA_18           AAA domain
    2.5e-05   24.1   2.5        1.3    8.7   0.0    4.0  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    4.3e-05   23.1   0.0       0.44   10.1   0.0    3.1  2  AAA_7            P-loop containing dynein motor region
    0.00034   20.7   0.0       0.49   10.4   0.0    3.0  2  AAA_14           AAA domain
    0.00051   19.9   0.1      0.045   13.6   0.0    2.9  2  AAA_3            ATPase family associated with various cellul
     0.0011   18.3   1.0        0.1   11.8   0.0    3.5  4  TIP49            TIP49 P-loop domain
     0.0013   18.5   0.0       0.25   11.1   0.0    2.6  2  IstB_IS21        IstB-like ATP binding protein
     0.0014   19.2   0.6        4.1    7.9   0.0    3.5  4  AAA_23           AAA domain
     0.0021   18.1   0.1        1.7    8.6   0.0    3.0  3  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0033   17.4   0.0        2.2    8.2   0.0    3.5  3  ResIII           Type III restriction enzyme, res subunit
     0.0048   15.9   0.0      0.012   14.6   0.0    1.6  1  AAA_6            Hydrolytic ATP binding site of dynein motor 
     0.0059   16.3   0.0        2.8    7.8   0.0    2.8  2  AAA_29           P-loop containing region of AAA domain
     0.0065   16.6   0.0      0.038   14.1   0.0    2.3  1  Torsin           Torsin
     0.0067   16.6   0.1        1.7    8.8   0.0    2.9  2  AAA_33           AAA domain
     0.0084   16.5   0.0        8.8    6.8   0.0    3.4  3  RNA_helicase     RNA helicase
  ------ inclusion threshold ------
      0.017   15.1   0.1       0.73    9.7   0.0    3.0  2  NACHT            NACHT domain
      0.037   13.3   0.0         17    4.6   0.0    3.0  3  Zeta_toxin       Zeta toxin
      0.048   13.2   0.0       0.99    8.9   0.0    2.6  2  AAA_25           AAA domain
      0.056   13.7   0.0        1.3    9.2   0.0    2.6  2  AAA_28           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0032       1.9       4      97 ..     203     300 ..     200     321 .. 0.81
   2 !  159.3   0.0   1.6e-49   9.4e-47       1     171 []     493     654 ..     493     654 .. 0.97

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0032
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.........EEEEETGGG-------------H CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.........ivllDEidKihpkessgadvSre 93 
                  + ll+g  gvGkt +a+ la l+  + + +   a+a+ +    ++  l++  +   ++ ++ ++           i+++DEi        ++ d S+ 
  EGE26821.1 203 NNPLLVGDPGVGKTAIAEGLAWLIV-NGKAPKPLANATIYSL--DMGALIAGTKFRGEFETRMKDLIdelkdtpesILFIDEIHMMIG-AGASMD-SSM 296
                 567899*****************97.9999999999999999..99999999999999999999988999999999******987766.233333.334 PP

                 HHHH CS
       AAA_2  94 gVqr 97 
                 +V +
  EGE26821.1 297 DVSN 300
                 5555 PP

  == domain 2  score: 159.3 bits;  conditional E-value: 1.6e-49
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 +pi+s+l+ gptgvGkte++++la ll v    +l+r+d+se++e    +h+ srligappgyvg+++gG            ++llDE++K+h+     
  EGE26821.1 493 KPIGSFLFSGPTGVGKTEISRQLAYLLGV----PLVRFDMSEYME----AHTASRLIGAPPGYVGYDQGGlltekiqqnphcVLLLDELEKAHS----- 578
                 689*************************8....************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                       +V+++LLq++++gtltd++gr+ ++k++++Imt+++g++ is++s     ++++++++ +++++++++pE+ +Rl+ i
  EGE26821.1 579 ------DVFNLLLQVMDHGTLTDNNGRMASFKQVIVIMTTNVGADSISRRSM--GFTQQDHHSDNQNAIQRTFSPEFRNRLDAI 654
                 ......*******************************************555..6999999********************975 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   1.0   3.9e-30   2.3e-27       1      82 [.     345     427 ..     345     465 .. 0.81

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 3.9e-30
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpee.leklekelakle 82 
                 s+++ti+iL+glk +ye++Hgv ++++a+eaavklS ++i++rflPdkAID++Dea++ vrl++++ ++    + +k+ ++++
  EGE26821.1 345 SVSDTITILQGLKGYYEDFHGVAYTEDAIEAAVKLSVKHIHERFLPDKAIDVIDEAGSFVRLHHDKVTNHsQMDTQKTSSSIQ 427
                 5789***********************************************************99866542333444444444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   2.8e-14   1.7e-11       2      89 ..     206     302 ..     205     342 .. 0.80
   2 ?   -2.2   0.1       8.7   5.2e+03      44      81 ..     382     415 ..     363     438 .. 0.61
   3 !   42.2   0.0   1.6e-13   9.7e-11       2     117 ..     499     621 ..     498     632 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 2.8e-14
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 ll+G pG+GKT++a+ +a  +          +++++++++  l+   k+ ge e ++++l++e+k     silfiDEi+ ++++   ++ +++++v n 
  EGE26821.1 206 LLVGDPGVGKTAIAEGLAWLIvngkapkplaNATIYSLDMGALIagTKFRGEFETRMKDLIDELKDTP-ESILFIDEIHMMIGAG--ASMDSSMDVSNL 301
                 89******************55554444444899********997778***************98874.5************999..555555555554 PP

                 H CS
         AAA  89 L 89 
                 +
  EGE26821.1 302 I 302
                 4 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 8.7
                 HHHHHHHHHHHHTSTSEEEEEETGGGHHHHH....TTCCCHH CS
         AAA  44 kkirelfkeakekakpsilfiDEidalaksr....sgsesee 81 
                 k+i+e f       ++ i +iDE+ ++++      +   + +
  EGE26821.1 382 KHIHERFLP-----DKAIDVIDEAGSFVRLHhdkvT---NHS 415
                 444444432.....2346689999999888753332...222 PP

  == domain 3  score: 42.2 bits;  conditional E-value: 1.6e-13
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellsk............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 l++Gp G+GKT + +++a  lgv+++++++se ++             yvg  +  +  l ++++++  +++l++DE+++ +++             n 
  EGE26821.1 499 LFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAhtasrligappgYVGYDQGGL--LTEKIQQNP-HCVLLLDELEKAHSDV-----------FNL 583
                 89********************************668****9999998888766654..445565554.6***********8777...........*** PP

                 HHHHHHHTTTS........SSTEEEEEEESS.GGGSTH CS
         AAA  89 Llteldgvkkk........eskvivigatnr.pdkldp 117
                 Ll+++d  +           ++vivi++tn   d++++
  EGE26821.1 584 LLQVMDHGTLTdnngrmasFKQVIVIMTTNVgADSISR 621
                 *******999999******555********98888876 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   7.7e-24   4.6e-21       3      77 ..     662     736 ..     660     741 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 7.7e-24
                    HHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTS CS
  ClpB_D2-small   3 keelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegd 77 
                     e + ++vd+++ +l+ +l ++++ l+v+de++ +la+kgyd+ +GARp+ r+iq+ +++pl+++il+g+lk+g+
     EGE26821.1 662 PEVIGDVVDKFITELYDQLLDKNIILSVDDEVRLHLAKKGYDRLMGARPMARTIQELLKKPLSKLILFGDLKQGK 736
                    68899*******************************************************************865 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.5e-05    0.0089       3      76 ..     206     284 ..     204     288 .. 0.70
   2 !   45.3   0.0   1.4e-14   8.3e-12       2     123 ..     498     615 ..     497     624 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-05
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.............--------..G-SEEEEESGGG CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik....ngttslvdsplvraar..egeilvlDEver 76 
                 lLvG+pG+gK+ +ae la ++ n     + l   t ++ l ++  i+     g+ + + + l ++ +    +il++DE+++
  EGE26821.1 206 LLVGDPGVGKTAIAEGLAWLIvN-GKAPKPLANATIYS-LDMGALIAgtkfRGEFETRMKDLIDELKdtPESILFIDEIHM 284
                 8********************63.44444443333332.222222222345888888888888888888889999999987 PP

  == domain 2  score: 45.3 bits;  conditional E-value: 1.4e-14
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------...G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar...egeilvlDEveraesevlnsLlslleerrllle 97 
                 +l  Gp+G+gK+e++++la +l+ +++   +++++++ +    +   +g   + ++ l ++       ++l+lDE+e+a+s+v+n Ll+++++ +l  +
  EGE26821.1 498 FLFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRLIGAPPGYVGYDQGGLLTEKIqqnPHCVLLLDELEKAHSDVFNLLLQVMDHGTLT-D 595
                 6889*******************************99877666665577777777776655444988899**************************9.6 PP

                 -SSSEEE---......-EEEEEESS- CS
       AAA_5  98 eggelvkaknddllerfrviatanpl 123
                 ++g+  ++k+      + vi+t+n  
  EGE26821.1 596 NNGRMASFKQ------VIVIMTTNVG 615
                 6666666666......99***99965 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.1   3.4e-14     2e-11       3      52 ..      15      62 ..      14      63 .. 0.95
   2 ?    2.7   0.0      0.23   1.4e+02      19      48 ..     106     135 ..     106     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 3.4e-14
                HHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N  3 elAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52
                ++Ak++ hq+is+EHLL++Ll++   +  r+L+++G+d + + + i+++l
  EGE26821.1 15 KFAKQHSHQFISVEHLLMGLLKDA--FTVRVLEECGADSEFILSSIKQYL 62
                78*******************977..********************9987 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.23
                 HHHHHHSCTSHHHHHHHHTTSSHHHHHHHH CS
       Clp_N  19 LlALleeddGlaarlLkkaGvdldalrkai 48 
                 L A+++e+++ a +l++ +Gvd+  + +ai
  EGE26821.1 106 LVAIFKEERSYANELIQSCGVDILSVTRAI 135
                 679999****************97777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.99   5.9e+02      80     139 ..      33     101 ..       9     112 .. 0.66
   2 !   23.3   0.0   1.2e-07     7e-05       1      45 [.     182     223 ..     182     297 .. 0.87
   3 !   12.1   0.0   0.00032      0.19       3      45 ..     468     516 ..     466     540 .. 0.85
   4 ?    4.4   0.0     0.073        44     130     161 ..     560     590 ..     554     603 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.99
      AAA_16  80 ellrqlldeaesaeleawrekleeala...........avpelagaeasrllellkrll..allsrderplvl 139
                 +ll++  +     e +a++e+++++++           +v++l+    ++l+++++r++  +++s++++ lv 
  EGE26821.1  33 GLLKDAFTVRVLEECGADSEFILSSIKqylkdfmpkreDVDPLPT---KSLNRVMQRAIwqVQASQTQQ-LVK 101
                 445555555555667777777777777777777754433344443...799999*99999888888666.775 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1.2e-07
      AAA_16   1 rlvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrell 45 
                 +lvGR +e+e+  ++l+r r++ p   ll+G++GvGK+++++ l+
  EGE26821.1 182 PLVGRADEIERTVQILCRRRKNNP---LLVGDPGVGKTAIAEGLA 223
                 69***************9998877...999**********98776 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00032
      AAA_16   3 vGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrell 45 
                 +G ++ +++L +a+  +rsg +      ++ l+sG+ GvGK+ + r+l+
  EGE26821.1 468 FGQDQAVDTLVDAILLARSGLThpdkpiGSFLFSGPTGVGKTEISRQLA 516
                 7888889999888887777777778899****************99997 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.073
      AAA_16 130 lsrderplvlvlDdlqwadeaslqllaaLlrl 161
                 ++++ +  vl+lD+l++a ++  +ll + ++ 
  EGE26821.1 560 IQQNPH-CVLLLDELEKAHSDVFNLLLQVMDH 590
                 455455.**************99997776665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0    0.0002      0.12      20     105 ..     200     285 ..     183     323 .. 0.78
   2 !   22.2   0.0   1.5e-07   9.1e-05      24     144 ..     497     615 ..     471     628 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
                      TSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBS.SSSSTTTSS-BEHHHHHTTTSEEEEETGGGS CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhe.kGaFtGAekekkGlfekadgGtlfLDeigel 105
                      + + + l++G+ G+GK+ +a+ +     + ++p    n + ++ ++  + + G++ +G F    k+    ++ + +++lf+Dei+ +
       EGE26821.1 200 RRKNNPLLVGDPGVGKTAIAEGLAWLIVNGKAPKPLANATIYSLDM-GALIAGTKfRGEFETRMKDLIDELKDTPESILFIDEIHMM 285
                      34567899**************999877777776666666655543.3444555439***************************988 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.5e-07
                      -EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHHH CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLlr 115
                      s l  G +G+GK+ ++r++         p+v+++++++ e   +s+L G   G + G ++      ++++  + +l+LDe+++   ++ + Ll+
       EGE26821.1 497 SFLFSGPTGVGKTEISRQLAYLLG---VPLVRFDMSEYMEAHTASRLIGAPPG-YVGYDQGGLltEKIQQNPHCVLLLDELEKAHSDVFNLLLQ 586
                      56899************9987765...8**********************998.88988877555889999*********************** PP

                      HHHHSEEESBTSSSEEE--EEEEEEESS- CS
  Sigma54_activat 116 vlqegevervGsskeikvdvriiaatned 144
                      v+++g+++   ++     +v +i++tn  
       EGE26821.1 587 VMDHGTLTDNNGRMASFKQVIVIMTTNVG 615
                      ******99888888888889999999865 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     8e-07   0.00048      23     185 ..     190     342 ..     185     345 .. 0.81
   2 ?    1.8   0.0      0.23   1.4e+02      35      54 ..     495     514 ..     471     519 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 8e-07
        TniB  23 LeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelkvr 121
                 +e+ ++   r r +n llvGd+ +GKt+i+e  a l             ++  +ap+   ++ +y+  + al a +k r + ++  ++ +  l+++   
  EGE26821.1 190 IERTVQILCRRRKNNPLLVGDPGVGKTAIAEGLAWL-------------IVNGKAPKPLANATIYSLDMGALIAGTKFRGEFETRMKDLIDELKDTPES 275
                 566667777888889999999999999998876644.............6666788889999999999******************************* PP

        TniB 122 vLiiDEihnllag..sarkqreflnalks.LgnelkipivlvGteealralrtDpqlasRFepialp 185
                 +L iDEih ++ +  s+++   + n++k  L   +  +i      e  +++++D+ l++RF++i ++
  EGE26821.1 276 ILFIDEIHMMIGAgaSMDSSMDVSNLIKPaLAKGYIRSIGSTTFAEYRQVFEKDHALSRRFQKIDIK 342
                 *********985412556778899****615555555555566688999*************99876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.23
        TniB  35 mpnlllvGdsnnGKtmivek 54 
                 + + l+ G++ +GKt i ++
  EGE26821.1 495 IGSFLFSGPTGVGKTEISRQ 514
                 478999***********987 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00024      0.14      23      64 ..     203     244 ..     186     260 .. 0.85
   2 !    8.7   0.1    0.0018       1.1      25      61 ..     498     535 ..     467     664 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsllpplseeealevakiasva 64 
                    n llvG pG GKt +a+ l+ l+ + +  + l  a+i+s+ 
    EGE26821.1 203 NNPLLVGDPGVGKTAIAEGLAWLIVNGKAPKPLANATIYSLD 244
                   5779********************999999999999999986 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0018
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllp.plseeealevakia 61 
                   +l+ Gp G GKt + ++l+ ll  pl + ++ e  + +
    EGE26821.1 498 FLFSGPTGVGKTEISRQLAYLLGvPLVRFDMSEYMEAH 535
                   78899999999999999998884245555555544444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0033         2       4      31 ..     201     228 ..     198     306 .. 0.68
   2 !   12.8   0.4   0.00018      0.11       7     128 ..     497     608 ..     493     614 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0033
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqlde 31 
                 +++  +++G +G+GKT  ++ l+   ++
  EGE26821.1 201 RKNNPLLVGDPGVGKTAIAEGLAWLIVN 228
                 5667799**********99987765544 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00018
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105
                 + +  G++G+GKT   r+l++ l         ++++v++++++ ++     +   r +g +  +      +   +l++ +++     +l++DE ++  +
  EGE26821.1 497 SFLFSGPTGVGKTEISRQLAYLL---------GVPLVRFDMSEYMEA----HTASRLIGAPPGY---VGYDQGGLLTEKIQQNPH-CVLLLDELEKA-H 577
                 56778******************.........***********9944....4445556666666...445555677777777777.89999999999.9 PP

      AAA_22 106 eealeeLrsllnl........srkgvqliLv 128
                  ++++ L + ++         +  +++ ++v
  EGE26821.1 578 SDVFNLLLQVMDHgtltdnngRMASFKQVIV 608
                 9999999888775555555555555555555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0     0.003       1.8       2      20 ..     206     224 ..     206     283 .. 0.81
   2 !   12.1   0.0   0.00037      0.22       3      31 ..     500     526 ..     499     585 .. 0.82
   3 ?    1.4   0.0      0.74   4.4e+02      74     107 ..     662     695 ..     617     702 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.003
      AAA_18   2 lltGtpGvGKttlakeLsk 20 
                 ll G pGvGKt +a+ L+ 
  EGE26821.1 206 LLVGDPGVGKTAIAEGLAW 224
                 589************9975 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00037
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdv 31 
                  +G+ GvGKt++++ L+ +l  gv l   
  EGE26821.1 500 FSGPTGVGKTEISRQLAYLL--GVPLVRF 526
                 68**************9999..4444333 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.74
      AAA_18  74 gknl..vidghlaeleseaakdikkvvLtaspeell 107
                 ++++  v+d ++ el++  + d++ ++L +++e++l
  EGE26821.1 662 PEVIgdVVDKFITELYDQLL-DKN-IILSVDDEVRL 695
                 35555599999999999866.567.9*******987 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.6     0.005         3      37      55 ..     206     224 ..     188     296 .. 0.49
   2 !    8.7   0.0    0.0022       1.3      11      61 ..     469     523 ..     460     621 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.005
      RuvB_N  37 llyGpPGlGkttlakiiak 55 
                 ll+G PG+Gkt++a+ +a 
  EGE26821.1 206 LLVGDPGVGKTAIAEGLAW 224
                 6777788888777654442 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0022
      RuvB_N  11 gqekvkeklkifieaakk....reealdhvllyGpPGlGkttlakiiakelgvkl 61 
                 gq++  ++l  +i  a++     ++++   l++Gp G+Gkt +++ +a  lgv l
  EGE26821.1 469 GQDQAVDTLVDAILLARSglthPDKPIGSFLFSGPTGVGKTEISRQLAYLLGVPL 523
                 666666666555544444111145667779**************99999888764 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0012       0.7      31      52 ..     200     221 ..     189     286 .. 0.74
   2 !   10.1   0.0   0.00073      0.44      36     140 ..     498     598 ..     492     625 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0012
       AAA_7  31 knkkpvllvGptGtGKtviikd 52 
                 ++k++ llvG+ G+GKt+i++ 
  EGE26821.1 200 RRKNNPLLVGDPGVGKTAIAEG 221
                 567789*************986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00073
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiies...klekrrkgvygPp..ggkklvvFvDDlnmpakekygaqppiellRql 129
                 +l+ GptG+GKt i ++l   l    +  + + +s +++a++  ++i +   ++   ++g++  +  ++ ++v+ +D+l   + + +      +ll q+
  EGE26821.1 498 FLFSGPTGVGKTEISRQLAYLLG---VPLVRFDMSEYMEAHTASRLIGAppgYVGYDQGGLLTEKiqQNPHCVLLLDELEKAHSDVF------NLLLQV 587
                 79***************887777...7788888888888888888886522257777888777652245578888888888887775......578888 PP

       AAA_7 130 ldyggwYdrkk 140
                 +d+g + d++ 
  EGE26821.1 588 MDHGTLTDNNG 598
                 88887777754 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00083      0.49      12      90 ..     212     299 ..     203     347 .. 0.65
   2 ?    6.9   0.0      0.01       6.2       7      90 ..     500     591 ..     497     601 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00083
      AAA_14  12 rvGKTtllkqlikell......vkkesilyinldderdkkladpe.....kllelileklkeekktylflDEiqevpewekalkslvdeg 90 
                  vGKT +++ l+   +       +  +   ++ld   + + ++++     ++ +li e+ k+  +++lf+DEi+++ ++   + s +d +
  EGE26821.1 212 GVGKTAIAEGLAWL-IvngkapKPLANATIYSLDMGALIAGTKFRgefetRMKDLIDEL-KDTPESILFIDEIHMMIGAGASMDSSMDVS 299
                 57777777666522.23555554445555555555555333322221222444555554.4457899*********99998888888744 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.01
      AAA_14   7 itGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe............kllelileklkeekktylflDEiqev.pewekalkslvdeg 90 
                  +G+  vGKT + +ql++ l      +  + +d  ++ ++ + +            +   l+ ek++++ + +l+lDE  ++ +++++ l +++d+g
  EGE26821.1 500 FSGPTGVGKTEISRQLAYLLG-----VPLVRFDMSEYMEAHTASrligappgyvgyDQGGLLTEKIQQNPHCVLLLDELEKAhSDVFNLLLQVMDHG 591
                 57999***********96555.....3344444333322222112233444555554556777777677888999***9987346777777777765 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.19   1.1e+02       3      22 ..     206     225 ..     205     231 .. 0.86
   2 !   13.6   0.0   7.6e-05     0.045       3     111 ..     499     613 ..     497     622 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.19
       AAA_3   3 llegvPGlaktllvkalaka 22 
                 ll g PG++kt +++ la  
  EGE26821.1 206 LLVGDPGVGKTAIAEGLAWL 225
                 68899**********99965 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 7.6e-05
       AAA_3   3 llegvPGlaktllvkalakaldlefkriqftpdl...lPsdilGte..vfeeke...kefefkkGpvfanllladeinrappktqsalleameerqvtv 93 
                 l+ g  G++kt + ++la  l++ + r  +   +     s ++G+   ++  ++    + ++++ p  + +ll de+++a + +   ll++m+  ++t 
  EGE26821.1 499 LFSGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMeahTASRLIGAPpgYVGYDQgglLTEKIQQNP--HCVLLLDELEKAHSDVFNLLLQVMDHGTLTD 595
                 6678889***************99999988765522245667776322222222112233444444..45899*************************9 PP

       AAA_3  94 egethklpepflvlatqn 111
                 ++ +++  ++ +v+ t n
  EGE26821.1 596 NNGRMASFKQVIVIMTTN 613
                 988888777788887777 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00017       0.1      53      95 ..     205     247 ..     165     270 .. 0.74
   2 ?    1.9   0.2      0.17     1e+02     258     290 ..     254     285 ..     248     288 .. 0.72
   3 ?   -2.1   0.0       2.9   1.7e+03     136     168 ..     406     438 ..     352     448 .. 0.71
   4 ?    0.5   0.0      0.47   2.8e+02      52      87 ..     497     530 ..     460     537 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  53 vLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkk 95 
                  Ll+G++g Gkta+a +++  + +      l+ + +ysl++  
  EGE26821.1 205 PLLVGDPGVGKTAIAEGLAWLIVNGKAPKPLANATIYSLDMGA 247
                 599*******************99999999*********9975 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 258 lreeinkkvakyveegkaeivpGvlfiDevhml 290
                  r e ++ +++ ++e k +    +lfiDe+hm+
  EGE26821.1 254 FRGEFETRMKDLIDELK-DTPESILFIDEIHMM 285
                 56666666666666544.445689********8 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.9
                 ..TTS--EEEEEE-SS-EEEEEE-HHHHHHHHH CS
       TIP49 136 kekkikevkitlktakeekklklgskiaeellk 168
                  ++ + + +  + t+k++++++++  i+e++  
  EGE26821.1 406 LHHDKVTNHSQMDTQKTSSSIQVDIDIIEQVVA 438
                 445555667788999999999999999998865 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.47
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfvalsgse 87 
                 + L++Gp+g Gkt ++  ++  lg  vp v +  se
  EGE26821.1 497 SFLFSGPTGVGKTEISRQLAYLLG--VPLVRFDMSE 530
                 5799**********9999998888..7777777776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00041      0.25      45      72 ..     200     227 ..     187     333 .. 0.77
   2 ?    4.8   0.0     0.035        21      50      68 ..     498     516 ..     474     590 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00041
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveav 72 
                 ++k+n +l+G +GvGK+ +a  l+   v
  EGE26821.1 200 RRKNNPLLVGDPGVGKTAIAEGLAWLIV 227
                 578999***************9987555 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.035
   IstB_IS21  50 ivllGpsGvGKshlaialg 68 
                 +++ Gp+GvGK+ ++  l+
  EGE26821.1 498 FLFSGPTGVGKTEISRQLA 516
                 6889********7654443 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       8.1   4.9e+03     131     167 ..     140     176 ..      81     180 .. 0.61
   2 !    7.9   0.0    0.0068       4.1      23      49 ..     206     233 ..     194     281 .. 0.82
   3 ?   -0.9   0.1       3.3     2e+03      71     123 ..     373     439 ..     309     485 .. 0.59
   4 ?    7.2   0.0     0.011       6.7      20      43 ..     496     519 ..     488     535 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 8.1
      AAA_23 131 ilnlilflgqerfeefelkdkkerleelekeleeled 167
                 ++ + ++ g ++ +++++k k++ l++++  l+e+ +
  EGE26821.1 140 RSAHDAYDGVDESANQSTKPKQNPLDAYTLNLNEQAK 176
                 3344455555567777888888888888888888765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0068
      AAA_23  23 lItGpNGaGKTTildAiklaL.ygetpr 49 
                 l++G+ G GKT+i + + +    g++p+
  EGE26821.1 206 LLVGDPGVGKTAIAEGLAWLIvNGKAPK 233
                 789****************873555554 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.3
      AAA_23  71 vkayveltfenkdgry..............trsiererelskkkgkttkkaklelleideleqfise 123
                  +a v+l+++++++r                ++++ ++ ++ ++++t+k +   +++id  eq + +
  EGE26821.1 373 IEAAVKLSVKHIHERFlpdkaidvideagsFVRLHHDKVTNHSQMDTQKTSSSIQVDIDIIEQVVAK 439
                 4555677777776665666666666665554444444444444444444444444444443333333 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.011
      AAA_23  20 gltlItGpNGaGKTTildAiklaL 43 
                 g +l++Gp+G GKT i + + + L
  EGE26821.1 496 GSFLFSGPTGVGKTEISRQLAYLL 519
                 789***********8887777776 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.025        15       8      40 ..     191     223 ..     184     232 .. 0.76
   2 !    8.6   0.0    0.0029       1.7      22      46 ..     498     522 ..     455     530 .. 0.81
   3 ?   -1.7   0.0       4.7   2.8e+03      12      32 ..     713     736 ..     708     741 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.025
                 HHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHH CS
        TsaE   8 ealgkklakalgdvilLeGdLGaGKTtlvrgla 40 
                 e+  + l +  ++  lL Gd G+GKT+++ gla
  EGE26821.1 191 ERTVQILCRRRKNNPLLVGDPGVGKTAIAEGLA 223
                 4555555554466789*************9987 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0029
                 EEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  22 ilLeGdLGaGKTtlvrglakalgve 46 
                 +l++G+ G+GKT ++r+la  lgv 
  EGE26821.1 498 FLFSGPTGVGKTEISRQLAYLLGVP 522
                 899****************999875 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.7
                 HHHHHCH...TEEEEEEESTTSSH CS
        TsaE  12 kklakal...gdvilLeGdLGaGK 32 
                 +++++ l    + ++L GdL  GK
  EGE26821.1 713 RTIQELLkkpLSKLILFGDLKQGK 736
                 444444432234599********9 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.082        49      12      50 ..     190     228 ..     168     239 .. 0.80
   2 ?   -0.0   0.0       1.3   7.7e+02     127     147 ..     268     288 ..     243     330 .. 0.75
   3 !    8.2   0.0    0.0037       2.2       8      47 ..     470     518 ..     446     520 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.082
                 HHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII  12 ienlleklkskrdkrglikmaTGtGKTlvaaklierllk 50 
                 ie++++ l  +r+++ l++   G+GKT +a  l++ + +
  EGE26821.1 190 IERTVQILCRRRKNNPLLVGDPGVGKTAIAEGLAWLIVN 228
                 445555555477888999************999998765 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.3
                 HHHTTT-SEEEEETGGGTTS. CS
      ResIII 127 ellrdrfdviiiDEaHrlgak 147
                 el+++ + +++iDE H + ++
  EGE26821.1 268 ELKDTPESILFIDEIHMMIGA 288
                 4444455599******87764 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0037
                 HHHHHHHHT................TTS...EEEEEESTTSTHHHHHHHHHHH CS
      ResIII   8 Qeeaienlleklks..........krdk...rglikmaTGtGKTlvaaklier 47 
                 Q +a++ l+    +          + dk    +l+  +TG+GKT ++ +l++ 
  EGE26821.1 470 QDQAVDTLV----DaillarsgltHPDKpigSFLFSGPTGVGKTEISRQLAYL 518
                 444444444....044446666663333455899************9998876 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.1e-05     0.012      38      77 ..     501     540 ..     495     543 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
       AAA_6  38 aGpagtGKtEtvkdLakalakqvvvfncsdqldykslgki 77 
                 +Gp+g GKtE  ++La  l++ +v f+ s+ +++++ +++
  EGE26821.1 501 SGPTGVGKTEISRQLAYLLGVPLVRFDMSEYMEAHTASRL 540
                 7*******************************99987776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0047       2.8      21      49 ..     201     229 ..     191     234 .. 0.80
   2 ?    5.3   0.0     0.028        17      21      37 ..     494     510 ..     485     523 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0047
      AAA_29  21 lkgatlltGpsGsGKSTllDAiqalLvpa 49 
                 +k++ ll+G+ G+GK+++   ++ l+v  
  EGE26821.1 201 RKNNPLLVGDPGVGKTAIAEGLAWLIVNG 229
                 34489*************99998888765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.028
      AAA_29  21 lkgatlltGpsGsGKST 37 
                 + g++l++Gp+G+GK+ 
  EGE26821.1 494 PIGSFLFSGPTGVGKTE 510
                 55789**********85 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   6.3e-05     0.038      14      74 ..     454     516 ..     446     532 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.3e-05
                 --HHHHHHHHHHH--S-HHHHHHHHHHHH.HHHT-SS-SS-E.EEEEEE-TTSSHHHHHHHHH CS
      Torsin  14 anleeLekdlekklfGqhlvkklvvksvk.aylenekpkkpL.vlsfhGwtGtGknfvaeiia 74 
                 + l++L+++l++ +fGq  + +++v ++  a     +p+kp+  + f G tG Gk  +++++a
  EGE26821.1 454 NILKNLNANLKQMVFGQDQAVDTLVDAILlARSGLTHPDKPIgSFLFSGPTGVGKTEISRQLA 516
                 45899*********************9862566677*****9457899*********999987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.055        33       3      20 ..     206     223 ..     206     232 .. 0.91
   2 !    8.8   0.0    0.0029       1.7       3      31 ..     499     527 ..     498     651 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.055
      AAA_33   3 llvGlpGsGKstlaerll 20 
                 llvG pG+GK+  ae+l+
  EGE26821.1 206 LLVGDPGVGKTAIAEGLA 223
                 589***********9986 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0029
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssd 31 
                 l+ G+ G+GK+  +++l+  lg+ l++ d
  EGE26821.1 499 LFSGPTGVGKTEISRQLAYLLGVPLVRFD 527
                 799**************988885555544 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.05        30       3      22 ..     207     226 ..     206     269 .. 0.86
   2 ?    6.8   0.0     0.015       8.8       2      20 ..     499     517 ..     498     537 .. 0.88
   3 ?   -0.6   0.0       2.8   1.7e+03      94     107 .]     601     614 ..     566     614 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.05
  RNA_helicase   3 lyGpsgeGKStlakeLakal 22 
                   l+G++g+GK+ +a+ La  +
    EGE26821.1 207 LVGDPGVGKTAIAEGLAWLI 226
                   79***********9988655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.015
  RNA_helicase   2 wlyGpsgeGKStlakeLak 20 
                   +++Gp+g+GK+ ++++La 
    EGE26821.1 499 LFSGPTGVGKTEISRQLAY 517
                   689************9875 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.8
  RNA_helicase  94 tlftSkvvivtsNv 107
                    +f+ ++vi+t+Nv
    EGE26821.1 601 ASFKQVIVIMTTNV 614
                   468899******96 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0012      0.73       4      31 ..     206     233 ..     205     274 .. 0.89
   2 ?    1.7   0.0      0.36   2.2e+02       5      24 ..     500     519 ..     497     539 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0012
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l G++G+GKT+ +++la ++  gk p+
  EGE26821.1 206 LLVGDPGVGKTAIAEGLAWLIVNGKAPK 233
                 589***************9999998877 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.36
                 EEC-TTTCHHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklalaw 24 
                   G+ G+GKT   ++la ++
  EGE26821.1 500 FSGPTGVGKTEISRQLAYLL 519
                 68*********999999877 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.029        17      14      36 ..     200     222 ..     188     227 .. 0.81
   2 ?   -1.5   0.1       2.1   1.3e+03     134     184 ..     378     433 ..     371     448 .. 0.58
   3 ?    4.6   0.0     0.029        17      18      58 ..     497     535 ..     480     547 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.029
  Zeta_toxin  14 erPklillgGqpGAGKselaell 36 
                 +r+   ll+G pG GK+++ae l
  EGE26821.1 200 RRKNNPLLVGDPGVGKTAIAEGL 222
                 56666799***********9865 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.1
  Zeta_toxin 134 elSrlgvldRyeee..vae.....gRlvpkeehdeafeglresvealeeekqldrvki 184
                 +lS++ +++R++ +  +       g +v   +hd++ ++ +  +++  ++ q+d ++i
  EGE26821.1 378 KLSVKHIHERFLPDkaI-DvideaGSFV-RLHHDKVTNHSQMDTQKTSSSIQVDIDII 433
                 55566666666555331.1233322333.34677777777777777666666665555 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.029
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlRelh 58 
                 + l +G +G GK+e+++ l+  l  +   vr+d  ++ e h
  EGE26821.1 497 SFLFSGPTGVGKTEISRQLAYLL--GVPLVRFDMSEYMEAH 535
                 45679**************9999..8999999999998888 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0017      0.99      37      65 ..     206     233 ..     186     306 .. 0.72
   2 ?    1.0   0.0      0.46   2.7e+02      37      54 ..     499     516 ..     494     524 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0017
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlg 65 
                 ll+G+pg+GKt++a  la  ++ Gk  ++
  EGE26821.1 206 LLVGDPGVGKTAIAEGLAWLIVNGK-APK 233
                 89****************9999887.444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.46
      AAA_25  37 llaGapgtGKttlaldla 54 
                 l+ G++g+GKt +  +la
  EGE26821.1 499 LFSGPTGVGKTEISRQLA 516
                 789********9988887 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.62   3.7e+02       4      20 ..     207     223 ..     205     232 .. 0.89
   2 ?    9.2   0.0    0.0022       1.3       3      42 ..     499     539 ..     497     551 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.62
      AAA_28   4 itGgestGKTtlleaLa 20 
                 ++G ++ GKT ++e La
  EGE26821.1 207 LVGDPGVGKTAIAEGLA 223
                 7899**********998 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0022
      AAA_28   3 vitGgestGKTtlleaLaar.gypvvpEaareileeklakg 42 
                  ++G+ + GKT ++++La   g+p v+  + e++e ++a++
  EGE26821.1 499 LFSGPTGVGKTEISRQLAYLlGVPLVRFDMSEYMEAHTASR 539
                 799***************877***99888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.40
# Mc/sec: 5761.68
//
Query:       EGE26822.1  [L=121]
Description: ATP-dependent Clp protease adaptor protein ClpS [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-27   93.6   0.5    6.1e-27   93.2   0.5    1.2  1  ClpS      ATP-dependent Clp protease adaptor protein ClpS
  ------ inclusion threshold ------
      0.098   12.9   0.1       0.12   12.7   0.1    1.1  1  PucR      Purine catabolism regulatory protein-like family


Domain annotation for each model (and alignments):
>> ClpS  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.5   6.8e-31   6.1e-27       1      79 [.      38     116 ..      38     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 6.8e-31
                 XXX--EEEEEES-S-S-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHSEEEEEEE-HHHHHHHHHHHHH......TT--E CS
        ClpS   1 kepkqYkvvLlNDdvttmefVvevLqkvfgkskeeAteimlevhreGravvgvgtreiaetkveqverlarreghpLkv 79 
                 k+pk Y v+++ND++ttm+fVv+vL ++f+++ ++A ++m+++h+ G+a+v   +++ ae kv++v++la++e++pL  
  EGE26822.1  38 KQPKLYTVIMYNDNYTTMDFVVYVLVEIFQHNIDKAYQLMMQIHELGQAAVALLPYDLAEMKVDEVTALAEQESYPLLT 116
                 689**************************************************************************75 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.3e-05      0.12      38      99 ..      51     116 ..      28     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
        PucR  38 llrggeLllttglal.kddpealaelvrelaeagvaaLviklgr...eipeelieaadelglPlie 99 
                  ++  ++++  ++ + +++ ++  +l+ +++e g aa+++   +      +e+ ++a++ + Pl++
  EGE26822.1  51 NYTTMDFVVYVLVEIfQHNIDKAYQLMMQIHELGQAAVALLPYDlaeMKVDEVTALAEQESYPLLT 116
                 555668899999999999**********************9963443335**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 929.06
//
Query:       EGE26823.1  [L=259]
Description: hypothetical protein EA1_05047 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0075   15.6   1.2      0.012   15.0   1.2    1.2  1  GAS       Growth-arrest specific micro-tubule binding
  ------ inclusion threshold ------
      0.022   15.0   1.3       0.51   10.7   0.2    2.4  2  TSC22     TSC-22/dip/bun family
      0.034   14.4   2.4       0.41   10.9   1.2    2.3  2  HALZ      Homeobox associated leucine zipper
      0.065   12.5   2.6      0.071   12.4   1.7    1.5  2  DUF4763   Domain of unknown function (DUF4763)
       0.27   11.2   2.0       0.68    9.9   2.0    1.7  1  Sec20     Sec20
        1.1    9.1   3.8        4.9    7.0   0.2    2.5  2  DivIC     Septum formation initiator
        1.3    9.1   4.3        5.6    7.1   0.2    2.4  2  bZIP_2    Basic region leucine zipper


Domain annotation for each model (and alignments):
>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.2   4.7e-06     0.012      48     107 ..      70     129 ..      63     138 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.7e-06
         GAS  48 elseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwe 107
                 ++se+++en rlk+++++a +e++  r  l+n + d   lk ++ +l+++++ lk+   e
  EGE26823.1  70 NVSELTAENVRLKQEMTTAIQERDISRSTLNNLRTDYDNLKTTNLQLEQVNELLKTAVAE 129
                 6899************************************************99987655 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.06   1.5e+02      29      45 ..      70      86 ..      65      91 .. 0.80
   2 ?   10.7   0.2    0.0002      0.51      14      45 ..      97     128 ..      95     132 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.06
       TSC22 29 rnseleeENslLkalas 45
                ++sel  EN  Lk+ ++
  EGE26823.1 70 NVSELTAENVRLKQEMT 86
                68899999999999876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0002
       TSC22  14 EeVevLkekIkeLeernseleeENslLkalas 45 
                  + ++L++   +L  +n +le+ N+lLk+ ++
  EGE26823.1  97 STLNNLRTDYDNLKTTNLQLEQVNELLKTAVA 128
                 56789***********************8876 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.089   2.3e+02      21      35 ..      71      85 ..      66      87 .. 0.81
   2 ?   10.9   1.2   0.00016      0.41       9      35 ..     101     127 ..      99     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.089
        HALZ 21 ydsLkkenekLkael 35
                +  L +en +Lk+e+
  EGE26823.1 71 VSELTAENVRLKQEM 85
                567999******997 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00016
        HALZ   9 vLKasYdaLksdydsLkkenekLkael 35 
                  L+ +Yd+Lk+ + +L++ ne Lk+ +
  EGE26823.1 101 NLRTDYDNLKTTNLQLEQVNELLKTAV 127
                 599999999999999999999998766 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.7   2.8e-05     0.071      94     148 ..      64     117 ..      51     126 .. 0.85
   2 ?   -3.7   0.0       2.3   5.8e+03      84     104 ..     209     229 ..     202     231 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.8e-05
     DUF4763  94 lltseqpeileLqrnnhkLrqqlaelqqhlkasrkslkelreslcqekkrlrklq 148
                 +++ + + + eL  +n++L+q+++ + q +  sr++l++lr+++ ++k +  +l+
  EGE26823.1  64 KHD-VAVNVSELTAENVRLKQEMTTAIQERDISRSTLNNLRTDYDNLKTTNLQLE 117
                 444.788999**********************************99988766665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.3
     DUF4763  84 ecvdedlelelltseqpeile 104
                 e+++++lel + +++ +++++
  EGE26823.1 209 EPKQMKLELVAGNQKVQQLYN 229
                 567777777777766666655 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.0   0.00026      0.68       4      54 ..      72     125 ..      69     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00026
       Sec20   4 kqiTeslraisqllsqevqq...Seenleeldastkslekleeeykqvedvlsr 54 
                 +++T++ ++ +q +  ++q+   S  +l++l++   +l++++ ++ qv+++l++
  EGE26823.1  72 SELTAENVRLKQEMTTAIQErdiSRSTLNNLRTDYDNLKTTNLQLEQVNELLKT 125
                 67899999999***999986555889*************************997 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0019       4.9      18      41 ..      63      86 ..      55     107 .. 0.53
   2 ?    3.5   0.6     0.024        62      18      47 ..      98     127 ..      93     131 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0019
                HHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 18 aykqlkqeiaalqaelaklkaene 41
                a +++  ++ +l+ae+++lk+e  
  EGE26823.1 63 AKHDVAVNVSELTAENVRLKQEMT 86
                555555566666666666665533 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaev 47 
                 ++  l+ +++ l+ ++ +l + ne L+  v
  EGE26823.1  98 TLNNLRTDYDNLKTTNLQLEQVNELLKTAV 127
                 556666666677777777777776666554 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2    0.0022       5.6      30      50 ..      67      87 ..      58      91 .. 0.82
   2 ?    3.1   0.6     0.041     1e+02      35      53 ..     107     125 ..      96     129 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
                HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 30 leervkeLeeeNaqLrqkveq 50
                 +  v eL++eN +L+q+  +
  EGE26823.1 67 VAVNVSELTAENVRLKQEMTT 87
                566799***********9866 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.041
                 HHHHHHHHHHHHHHHHHHH CS
      bZIP_2  35 keLeeeNaqLrqkveqLek 53 
                  +L++ N qL+q +e L++
  EGE26823.1 107 DNLKTTNLQLEQVNELLKT 125
                 5667777777777766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1422  (0.0793128); expected 358.6 (0.02)
Passed bias filter:                      909  (0.0507); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 1929.49
//
Query:       EGE26824.1  [L=736]
Description: copper-translocating P-type ATPase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-49  167.0   1.3    2.9e-49  167.0   1.3    1.9  2  E1-E2_ATPase  E1-E2 ATPase
    1.5e-37  129.9   0.1    2.7e-37  129.1   0.1    1.4  1  Hydrolase     haloacid dehalogenase-like hydrolase
    5.7e-13   49.1   0.0    1.3e-12   48.0   0.0    1.6  1  HMA           Heavy-metal-associated domain
      0.001   18.8   0.4     0.0057   16.4   0.2    2.1  2  Hydrolase_3   haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.039   14.4   0.0         11    6.6   0.0    3.2  2  3HCDH_RFF     3-hydroxybutyryl-CoA dehydrogenase reduced Ross


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.0   1.3   8.1e-53   2.9e-49       2     181 .]     225     404 ..     224     404 .. 0.99
   2 ?   -2.9   0.7       1.1     4e+03     139     177 ..     668     706 ..     633     713 .. 0.64

  Alignments for each domain:
  == domain 1  score: 167.0 bits;  conditional E-value: 8.1e-53
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTS CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkia 98 
                   l p++++++ d+++++ +++ +++GD++l ++gd++++Dg++  g   ++es+LTGEsl ++k+ gd+v++G++v +g++++ + atg +t+lg ++
    EGE26824.1 225 LIPTEVNRRIDDKWVKTNIEHIKVGDVLLANTGDKIAVDGVVQGGFGVCNESHLTGESLLIDKNIGDTVYAGSSVEDGSIHYQAAATGTKTQLGDMM 321
                   67999999***************************************************************************************** PP

                   TTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlakk 181
                   +++++a+ +k+++ +++dk+++v+vpvv+++a++ fl+++llg +   al+r++a+lv+a+PcaL+la+p a+++g++ +a++
    EGE26824.1 322 SALQDAQGTKADIARFADKVAAVFVPVVVVLAMMSFLVNYLLGADFDIALMRGVAVLVIACPCALGLATPAAIMAGMGTAARH 404
                   ********************************************************************************996 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.1
                   TTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 139 llgkslaeallralallvaaiPcaLplavplalalgarr 177
                   ++  ++ + +++al+   + iP a + ++  ++a++a++
    EGE26824.1 668 MTLTNIKQNFFFALVYNCIGIPLAAIGLLNPMMAAAAMA 706
                   333344466777777777777765554444444444444 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.1   7.4e-41   2.7e-37       1     209 [.     420     630 ..     420     631 .. 0.88

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 7.4e-41
                 SSEEEEESBTTTBCHHHHHHHHHHHH.......CHHHHHHHHHHHHCHHHHHHHHHHHHH...HHHHHHHHHETTTE.........HHHHTHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.........xxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa.......alalaaaletgsehpigkalvaaakar...sgaltgfatfigrg.........ayaigkpewltal 80 
                 i+t++fDk+GTLt g+psv ++ +         al l a +e  + hp+++alv+aak+      ++++++  +g+g         ++ +g p+++  +
  EGE26824.1 420 IDTIIFDKTGTLTLGRPSVQKIQCLSskinksqALGLTASIEQYASHPLANALVEAAKDKnlpLYEVSDIQSTTGQGlmgyvdgigRLKVGTPKFIGLE 518
                 79*******************88888755555566666666666****************8777777*****99*****9999999********99999 PP

                 HCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES.STTTSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
   Hydrolase  81 dippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdiet.vakpspeg 178
                        +a++++ ++       +++  avf ++d+  +k +a   + +++  gi+++l++gd ++ ++ +anqlG           i++ ++  sp++
  EGE26824.1 519 -----IWQADDQWSDASLVGLAIDDEPMAVFGLSDT--LKADAHSIIGRIHHDGIKTYLMSGDRQSVVDGVANQLG-----------ITAaFGQMSPRD 599
                 .....55555555555555555589***********..**************************************...........6667******** PP

                 HHHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 179 kvaaireLqgkpeevamVGDgvnDaaalaaA 209
                 k  ai+ L+ ++++v+mVGDgvnDa+a+aa 
  EGE26824.1 600 KMSAIETLKTQGKRVVMVGDGVNDAPAMAAS 630
                 ****************************985 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   3.5e-16   1.3e-12       2      62 .]      22      82 ..      21      82 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 3.5e-16
         HMA  2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62
                +++sgm+C++Ca ++ekvLs+ + +++++v++at  + +++da +t+  ++ +++ k+g++
  EGE26824.1 22 FAISGMTCQSCATRIEKVLSKKSAIHQATVNFATEVLHISYDANQTNRDEVMAWVAKTGFE 82
                89*******************************************99888******99996 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.33   1.2e+03      19      55 ..     553     589 ..     547     594 .. 0.81
   2 !   16.4   0.2   1.6e-06    0.0057     196     240 ..     604     648 ..     599     654 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.33
                  HHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  19 ktkeaikklkekgikvviATGRslravlpvleelgld 55 
                   + ++i +++  gik  + +G   + v  v+++lg++
   EGE26824.1 553 DAHSIIGRIHHDGIKTYLMSGDRQSVVDGVANQLGIT 589
                  5677899999999999999999999999999999987 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.6e-06
                  HHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSS CS
  Hydrolase_3 196 akelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAd 240
                  +++l+ + ++v+ +GDg ND + + a+  ++A+g+a+  +k+ A+
   EGE26824.1 604 IETLKTQGKRVVMVGDGVNDAPAMAASHASFAVGSATGIAKHTAS 648
                  46788999*******************************999886 PP

>> 3HCDH_RFF  3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.003        11      39      67 ..      60      88 ..      51      89 .. 0.89
   2 ?    4.1   0.0     0.018        66      41      67 ..     593     619 ..     581     620 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.003
   3HCDH_RFF 39 aaaqaspqalaqavalLqalGkkvlvlaD 67
                 + +a+++ +++++a+ +++G++++++aD
  EGE26824.1 60 ISYDANQTNRDEVMAWVAKTGFEAVPMAD 88
                5778999********************99 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.018
   3HCDH_RFF  41 aqaspqalaqavalLqalGkkvlvlaD 67 
                  q sp++   a+++L+++Gk+v+ ++D
  EGE26824.1 593 GQMSPRDKMSAIETLKTQGKRVVMVGD 619
                 47999999***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 5488.93
//
Query:       EGE26825.1  [L=255]
Description: putative hydrolase-oxidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-57  194.1   0.0    3.5e-57  193.8   0.0    1.0  1  NIF3      NIF3 (NGG1p interacting factor 3)
  ------ inclusion threshold ------
      0.081   13.4   0.0        0.3   11.6   0.0    2.0  1  Ank       Ankyrin repeat
       0.14   12.8   0.0       0.76   10.5   0.0    2.3  1  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> NIF3  NIF3 (NGG1p interacting factor 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.8   0.0   5.9e-61   3.5e-57       2     242 ..       9     242 ..       8     244 .. 0.95

  Alignments for each domain:
  == domain 1  score: 193.8 bits;  conditional E-value: 5.9e-61
        NIF3   2 ivevleelaplelaeswDnvGlqvgdpekevkkvllaldlteevleeAiekgadliithHPlifkplk.rlteddykkrllkkliknnislysaHtnlD 99 
                 +v++++++++ + +++++++Glqv d  +++k+++++++++++++++Ai+++a++i++hH++++k+ + +l ++  k+ +++kl++n+isl+++H++lD
  EGE26825.1   9 LVKFCDNYLNAHEFQDYCPNGLQV-DAGRPIKRIITGVTACQALIDQAIQAKAQAILVHHGYFWKGEDqPLVGM--KGVRVRKLMQNGISLIAYHLPLD 104
                 78999*******************.7899***********************************7776267777..*********************** PP

        NIF3 100 aapg.Gvndwlakalglekieplepskeekkeeeeglgrigeleepvsleelakklkkklglekvrvag.dldkkvkkvaicaGsGaslieeakakgaD 196
                 a+p+ G+n  la++l+l+ +  l p++      ++ +g +++ + p+ ++e+a+k+ k lg + +++a  d d++++k+a+c+G+++++ie+a+ +g+D
  EGE26825.1 105 AHPDiGNNRALADMLDLTITGALYPNQ------KHPIGNVATTN-PILASEFADKITKVLGRTPLHIAAtDGDRRLNKIALCTGGAQDMIEQAATMGCD 196
                 ***********************9987......789****9987.7**********************88***************************** PP

        NIF3 197 lliTGelkhhealdakekgiavidvgHyatErvflealaelLkekl 242
                 ++i+Ge+++ + + a+e g+ ++++gH+atEr+++ +l+e ++++l
  EGE26825.1 197 AFISGEISERTTHMARELGVDYFAAGHHATERGGVIRLGEVINQQL 242
                 *****************************************99986 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     5e-05       0.3       2      13 ..     158     169 ..     157     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
                 SBBHHHHHHHHT CS
         Ank   2 GnTPLHlAatng 13 
                 G+TPLH+Aat g
  EGE26825.1 158 GRTPLHIAATDG 169
                 99******9533 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013      0.76       2      16 ..     158     172 ..     157     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
       Ank_3   2 GetpLhlAarsgnle 16 
                 G+tpLh+Aa  g+  
  EGE26825.1 158 GRTPLHIAATDGDRR 172
                 9********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2057.11
//
Query:       EGE26826.1  [L=279]
Description: multicopper polyphenol oxidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-53  179.2   0.1    1.1e-52  178.9   0.1    1.0  1  Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase


Domain annotation for each model (and alignments):
>> Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.9   0.1   6.3e-57   1.1e-52      11     230 ..      46     276 ..      39     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 178.9 bits;  conditional E-value: 6.3e-57
                   GG-B----SSSSS-HHHHHHHHHHHHHHTTS.....GEEE-B--SS--EEE-EE--GGCSSSS..B...-SEEEESSTTSEEEEEESSSEEEEEEET CS
  Cu-oxidase_4  11 pyaslNlglhvgDdpeaVaenrrrlaaalgv.....rlvlleqvHgtevvvvaeeaaakgsaeeeele.aDalvtdepgvalavltADCvPvlladp 101
                    y+++N++lhv+D p+ V + r+rl a l       ++++l+qvHg+ v+ v+++       ++++l+ aDal+t+++++ala++tADCvP+ ++++
    EGE26826.1  46 LYGKFNMALHVNDMPSWVLNRRARLLAWLYEqaganQIHWLNQVHGNVVIDVDQT-------RSQSLSlADALITQRAKTALAIMTADCVPIAIFEK 135
                   6999**********************99844345566************777752.......2344666**************************** PP

                   TSSEEEEEEE-HHHHHHTHHHHHHHHHCSTT--GGGEEEEE-SB--TTT-EEEHHHHHHHHHHSGGGG..............EEEEETTEEEE-HHH CS
  Cu-oxidase_4 102 kgkvvaaaHaGwrGlvagvlektveamkelgakpedilaaiGPsIgpecyeVgeevaeafeaadpeaa..............aaaeeegkaylDLaa 184
                   +g+ va +HaGw+Gl++gv++ktv+ m +    + ++ a+iG++I+  +yeV++++ae++ ++   ++              +++++++kay+D+++
    EGE26826.1 136 NGSTVACIHAGWQGLANGVIAKTVALMPT----SYKLFAVIGACISLPAYEVDQHLAEHIIDEVVTNKlvlldrqvlfdmliKPSHNSDKAYIDIKR 228
                   ***************************87....789************************9877777789999999999999888999999****** PP

                   HHHHHHHHTT-..SEEEE---BTTT-TTT---HHHH...SH..---EEEEE CS
  Cu-oxidase_4 185 larlqLeeaGvkeenieasglCTvceedrfFSyRrd...gg..tGrmaali 230
                   la+lqLe+ G+  + ++++  C++ ++ +++SyR +   ++   Grma li
    EGE26826.1 229 LAQLQLEKFGI--TVLNDTVPCSYLSP-KYYSYRLQthtNRpaIGRMAMLI 276
                   ***********..9999999****888.5******965422679****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 2109.36
//
Query:       EGE26827.1  [L=355]
Description: ribosomal large subunit pseudouridine synthase D [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-28   99.6   0.8    2.7e-28   99.0   0.8    1.3  1  PseudoU_synth_2  RNA pseudouridylate synthase
    3.1e-11   42.8   0.0    5.1e-11   42.1   0.0    1.4  1  S4               S4 domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.8   3.1e-32   2.7e-28       2     159 ..     129     281 ..     128     282 .. 0.92

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 3.1e-32
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvf..gapeeeeg 93 
                      ++++nKPag++v+p+a +   +      +  +++ +  + +lvhR+Dk+t+Gll++A+++ a   l +++++++v ++Y+++     +++ + +
       EGE26827.1 129 VIIINKPAGMVVHPGAGNRTGTLVNALLYHFPKQAHLPRAGLVHRIDKDTTGLLVIARTKSAQLSLIDQLKDKSVYRHYQCVALgaVHEVLRHA 222
                      79**************877888888888888899************************************************984456777888 PP

  PseudoU_synth_2  94 aikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      +i+++i +   ++  +++ a +++gk a t++   k+     ++++sl+ ++l+tGr+hQiRvhl+
       EGE26827.1 223 QIDAPIGR---HSTHRTKMAVKQTGKPALTHIVNAKYL----HERYSLLDIHLKTGRTHQIRVHLS 281
                      89999999...9999999******************99....**********************97 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   5.7e-15   5.1e-11       2      47 ..      56     100 ..      55     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 5.7e-15
                 EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCE CS
          S4   2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDv 47 
                 RLdk++a +  + sr   +++I +G+ +VNGkvvk p+y Vk+gD+
  EGE26827.1  56 RLDKLCADIFGGFSRANLKKFIDEGQLTVNGKVVK-PKYAVKVGDI 100
                 ***********************************.*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2880.38
//
Query:       EGE26828.1  [L=356]
Description: DNA uptake lipoprotein-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-55  187.6  14.3      3e-55  187.1  14.3    1.2  1  YfiO           Outer membrane lipoprotein
      4e-45  153.5   7.1    9.3e-45  152.3   7.1    1.6  1  TPR_18         Tetratricopeptide repeat
    1.6e-05   25.2   8.3       0.76   10.5   0.1    5.2  4  TPR_6          Tetratricopeptide repeat
     0.0037   17.0   6.2      0.005   16.6   3.2    2.2  2  TPR_21         Tetratricopeptide repeat-like domain
  ------ inclusion threshold ------
       0.11   12.4   3.4        5.1    7.0   0.6    2.5  2  Wzy_C_2        Virulence factor membrane-bound polymerase, C-
       0.15   10.7   0.1       0.22   10.1   0.1    1.2  1  Serendipity_A  Serendipity locus alpha protein (SRY-A)


Domain annotation for each model (and alignments):
>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1  14.3     1e-58     3e-55       2     202 ..      39     245 ..      38     246 .. 0.97

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 1e-58
                 ---HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTTHHHHHHHHHHHHHHHHSHSC... CS
        YfiO   2 dktaselYekgqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthknvdyvlYlrglsalaqarell... 97 
                 +kt++++Y+++ eal k++ ++Ai++l+++ + yP+++ya+qa ldliyA+yk++d++++l+s e+F++ yP++++vdy+lY++g++++  a + +   
  EGE26828.1  39 EKTDAAYYQEASEALDKNQNRNAIEALNNIRTFYPTGQYAQQALLDLIYAQYKANDFEAVLQSTEEFIHRYPNSRSVDYALYVQGVTHMGGAPKASrlv 137
                 678999***********************************************************************************9999999999 PP

                 ...TTTS-THHHHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT- CS
        YfiO  98 ...rskrdpesarqafedfkklvekyPdseYaadakkrltelrerLArhElevaefylkreayvaainRvkevlknypdtesveeaLaimveayralgl 193
                    +s+rd +++r af+df++l+++yPds+Y ada +r++++ + +A+hEl+ a++y+kr a vaa+nR+k v + yp++  v+ea ai+ +++++lgl
  EGE26828.1 138 rfdQSHRDVTYLRLAFRDFQNLLKHYPDSPYVADAAQRMIAIYNDFAEHELAAARWYVKRDAMVAAANRAKWVFQYYPQSTGVPEAIAILAYSNQKLGL 236
                 999************************************************************************************************ PP

                 HHHHHHHHH CS
        YfiO 194 eaaaeeaak 202
                 ++ a++ ++
  EGE26828.1 237 TETAKQYKH 245
                 **9887766 PP

>> TPR_18  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   7.1   3.1e-48   9.3e-45       3     145 .]      35     176 ..      33     176 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 3.1e-48
      TPR_18   3 eavpdvpeaelyqeaqkaldegnyltaieqLealdtryPfGaYaeqaqLDLiYakykskdyelavasidrfirlnPahpkiDyvlYlrglanmaldkss 101
                   ++++++a +yqea +ald+++  +aie L++++t+yP+G+Ya+qa LDLiYa+yk +d+e+++ s + fi+ +P+   +Dy+lY++g+++m      
  EGE26828.1  35 VETAEKTDAAYYQEASEALDKNQNRNAIEALNNIRTFYPTGQYAQQALLDLIYAQYKANDFEAVLQSTEEFIHRYPNSRSVDYALYVQGVTHMGGA-PK 132
                 5789*****************************************************************************************865.55 PP

      TPR_18 102 lqslvsldrsdrdteaakaafrdfkrLlsryPnseYaaDaakrl 145
                  ++lv+ d+s+rd ++ + afrdf++Ll++yP+s Y aDaa+r+
  EGE26828.1 133 ASRLVRFDQSHRDVTYLRLAFRDFQNLLKHYPDSPYVADAAQRM 176
                 6899***************************************9 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.2    0.0062        19       2      31 ..      44      73 ..      43      74 .. 0.81
   2 !   10.5   0.1   0.00025      0.76       1      33 []      80     112 ..      80     112 .. 0.95
   3 !    6.2   0.0    0.0064        19      19      33 .]     152     166 ..     149     166 .. 0.88
   4 ?    3.4   0.1     0.048   1.4e+02       2      22 ..     223     243 ..     222     253 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0062
                HHHHHH.HHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  2 Alykla.lsyrklgdtdkAlealerlikeYP 31
                A+y+ a +++ k  + ++A+eal+++++ YP
  EGE26828.1 44 AYYQEAsEALDKN-QNRNAIEALNNIRTFYP 73
                6666665666666.9************9999 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00025
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 +Al+ l ++++k++d ++ l+  e++i +YP+S
  EGE26828.1  80 QALLDLIYAQYKANDFEAVLQSTEEFIHRYPNS 112
                 6999999*****99***99*************9 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0064
                 HHHHHHHHHHH-TT- CS
       TPR_6  19 AlealerlikeYPdS 33 
                 A + +++l+k YPdS
  EGE26828.1 152 AFRDFQNLLKHYPDS 166
                 6678**********9 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.048
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlea 22 
                 A   la+s +klg t++A+++
  EGE26828.1 223 AIAILAYSNQKLGLTETAKQY 243
                 56679******99*****986 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   3.2   1.7e-06     0.005      33     103 ..      36     106 ..       3     118 .. 0.81
   2 ?    0.8   0.1      0.11   3.3e+02      54     103 ..     165     211 ..     145     221 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.7e-06
      TPR_21  33 eeqaeeAsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvl 103
                 e+ +++ +a Yq+  ea++++++ +a ea +++   y+  +Ya++a L l  a+++a+d++a  ++ e+ +
  EGE26828.1  36 ETAEKTDAAYYQEASEALDKNQNRNAIEALNNIRTFYPTGQYAQQALLDLIYAQYKANDFEAVLQSTEEFI 106
                 34445557899*************************************************99877666655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.11
      TPR_21  54 daakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvl 103
                 d+  +++aa+++++ y++    a  +L++A+  v+++ + aA+++ +wv 
  EGE26828.1 165 DSPYVADAAQRMIAIYNDF---AEHELAAARWYVKRDAMVAAANRAKWVF 211
                 4445556666666666655...4457788888888888888888877776 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0039        12     107     147 ..      77     116 ..       8     135 .. 0.76
   2 ?    7.0   0.6    0.0017       5.1     143     179 ..     221     257 ..     157     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0039
     Wzy_C_2 107 frayadllelgllplspenlaaklalarklihlsPepavie 147
                 + a+++ll l +++ ++ + +a+l+ +++ ih++P  + + 
  EGE26828.1  77 Y-AQQALLDLIYAQYKANDFEAVLQSTEEFIHRYPNSRSVD 116
                 3.34556777789999*******************998775 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0017
     Wzy_C_2 143 pavierlilslallGdedeAeqilararalfpeedak 179
                 p  i+ l++s + lG ++ A+q+   ++  +p++  +
  EGE26828.1 221 PEAIAILAYSNQKLGLTETAKQYKHLLQINYPQYLNQ 257
                 5678999**************************9765 PP

>> Serendipity_A  Serendipity locus alpha protein (SRY-A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   7.4e-05      0.22     217     262 ..      51      96 ..      28     119 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.4e-05
  Serendipity_A 217 naeeknkgerklealsleralysletflneallrlifvslldleea 262
                    +a +kn+++  +eal+  r++y    +  +all li++ +   +  
     EGE26828.1  51 EALDKNQNRNAIEALNNIRTFYPTGQYAQQALLDLIYAQYKANDFE 96 
                    44578999999**************************988665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2895.55
//
Query:       EGE26829.1  [L=695]
Description: DNA primase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-33  114.4   0.0    3.2e-33  113.4   0.0    1.5  1  zf-CHC2    CHC2 zinc finger
    3.5e-33  114.4   0.0    7.1e-33  113.4   0.0    1.5  1  Toprim_N   DNA primase catalytic core, N-terminal domain
    5.1e-16   58.9   0.0    1.1e-15   57.8   0.0    1.6  1  Toprim_2   Toprim-like
    3.4e-15   56.3   0.0    9.4e-15   54.9   0.0    1.8  2  Toprim_4   Toprim domain
    2.9e-07   30.6   0.0    8.6e-07   29.1   0.0    1.9  1  Toprim     Toprim domain
    4.9e-06   26.8   0.0      9e-06   26.0   0.0    1.5  1  Toprim_3   Toprim domain
    0.00017   21.7   0.0      0.025   14.7   0.0    3.2  3  DnaB_bind  DnaB-helicase binding domain of primase


Domain annotation for each model (and alignments):
>> zf-CHC2  CHC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   1.3e-36   3.2e-33       2      96 ..       4      98 ..       3     100 .. 0.97

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 1.3e-36
     zf-CHC2  2 seevidelkeridivdvveeyvkLkkkgkdyvalCPFHeektpsftvspekqfyyCfgCgagGdaikFlmeieklsfveaveklakklgleleae 96
                +e++i++l++++d+v +++++ +Lk +g++y+++CPFH ektpsf+v+pe ++yyCfgC+a+G+ i+Fl+e+e++sf e+v+ l +++g+el+++
  EGE26829.1  4 PESIIEQLNSQADLVGIIGKHTTLKAAGREYKGCCPFHGEKTPSFYVNPETNLYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKD 98
                6889**************************************************************************************99876 PP

>> Toprim_N  DNA primase catalytic core, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   2.8e-36   7.1e-33       3     127 ..     204     324 ..     202     325 .. 0.86

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 2.8e-36
                 HHHHHCSCHHHHHHHHHCTT--HHHHHHCT-EEE-SHSCHHHHHHHHCT-HHHHHCCTTCEECSTT..T-EEETTTTEEEEEEE-TTS-EEEEEEEESS CS
    Toprim_N   3 keelkseegekaleYLkkRglseetiekFqlGyapkswdnllkllkkkkvseeelleagllskkek..gklydrFrnRimfPikdakgkvvgFgGRale 99 
                 +  l++ +   a++Y+ +Rglse+ti++F+lGyap++w++l++++ +   + e l+ +gl+++++k  g++++ +r+R++fPi+d++g+vvgF+GR+l 
  EGE26829.1 204 QLMLNNFT--FAKQYFLDRGLSEKTIQTFGLGYAPDGWQHLEQVFPQ---DIEGLKILGLVRESSKsnGRTFCLLRHRVIFPIRDNQGRVVGFAGRSLG 297
                 44444444..499*****************************99998...45567777777776655599****************************7 PP

                 S-SS.SEEE--SBTTB-CCC-EETHHHH CS
    Toprim_N 100 eeekaKYlNspetelFkKselLYgldea 127
                 +e++ KY+Ns+e+++F+K+++LYgl+e 
  EGE26829.1 298 DENP-KYINSSESPVFQKQQILYGLYES 324
                 7776.********************985 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   4.2e-19   1.1e-15       2      90 .]     334     421 ..     333     421 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 4.2e-19
    Toprim_2   2 vfEgaiDalSlaqlgikektnvvalgGtalteaalkllerypekkvvlalDnDkaGrkaakrlaellr...eagvrekirelpegkDwnell 90 
                 ++Eg++D+++l+q+gi     +va +Gta+ e++++ l ry ++++ l++D D+aG+kaa r  e++    ++g + k+++lp++ D++ +l
  EGE26829.1 334 LVEGYMDVIALYQAGIY---GAVAPMGTAANEKQIERLLRY-NNQLTLCFDGDNAGQKAAWRTLEIAApilNDGRELKFLTLPDHHDPDTYL 421
                 89**************6...9********************.899*****************999987565677899999********9986 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.0         7   1.8e+04      19      33 ..     106     120 ..     102     123 .. 0.76
   2 !   54.9   0.0   3.7e-18   9.4e-15       4      76 ..     333     394 ..     330     409 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 7
    Toprim_4  19 giknvvavlggalsp 33 
                  +k +v + g  l++
  EGE26829.1 106 KYKKTVKTQGAKLPT 120
                 799999999999844 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 3.7e-18
    Toprim_4   4 iiVEgyaDvlalekagiknvvavlggalspldgirpeklktenlveaekkvkevilaldgDaeGeataerlae 76 
                  +VEgy+Dv+al++agi ++va +g+a  ++++i+++ +            ++++l++dgD++G+++a r +e
  EGE26829.1 333 LLVEGYMDVIALYQAGIYGAVAPMGTAA-NEKQIERLLRYN----------NQLTLCFDGDNAGQKAAWRTLE 394
                 58**************************.******777777..........9****************99887 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   3.4e-10   8.6e-07       3      96 ..     333     404 ..     331     411 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 3.4e-10
                 EEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHHHHHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHTHHHTTTEE CS
      Toprim   3 vivEgpsdaktiakalgsgfqavtaslGhildletefkpvyeeiedkkkvlkalkelakradeiilatDpDreGeaiawellevlkellenkig 96 
                  +vEg++d++++ +a   g + ++a +G++ + ++                  +++l++  +++ l++D+D +G+++aw+ le + ++l++ ++
  EGE26829.1 333 LLVEGYMDVIALYQA---GIYGAVAPMGTAANEKQ------------------IERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILND-GR 404
                 68*************...9****************..................*****************************999988887.44 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.5e-09     9e-06       3      94 ..     333     426 ..     331     427 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 3.5e-09
    Toprim_3   3 iivEGietaLsileartgaaviAllsaanlkaiawp.ergkrvviaaDnDaandGreaaeklaerlea...agieavllepaegeDwndvlqkeGa 94 
                 ++vEG+ +++++++a    av  +  aan k+i+   ++ +++++++D+D+a  G++aa+++ e ++    +g+e+ +l  +++ D + +l ++Ga
  EGE26829.1 333 LLVEGYMDVIALYQAGIYGAVAPMGTAANEKQIERLlRYNNQLTLCFDGDNA--GQKAAWRTLEIAAPilnDGRELKFLTLPDHHDPDTYLKSHGA 426
                 579*********6555555444445558888888775799************..******976655433339*********9************98 PP

>> DnaB_bind  DnaB-helicase binding domain of primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.6   6.7e+03      28      43 ..     178     193 ..     178     193 .. 0.89
   2 !   14.7   0.0   9.9e-06     0.025       1      35 [.     440     474 ..     440     477 .. 0.88
   3 ?    3.2   0.0     0.039     1e+02      23      41 ..     577     595 ..     574     596 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.6
                 HHHHTTSSSHHHHHHH CS
   DnaB_bind  28 lpllaripdpieRdlY 43 
                 +p+l ++p++++ dlY
  EGE26829.1 178 APILTQSPNAAQGDLY 193
                 79*******9988887 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 9.9e-06
                 HHHHHHHTTTT--TTSHHHHHHHHHHHHHHHTTSS CS
   DnaB_bind   1 seFlierllegydlstpegkaravrealpllarip 35 
                 s++    l+++ydl++pe ka+a++ +++l   +p
  EGE26829.1 440 SDYIYGVLASQYDLTRPESKAQAMATLRQLTELLP 474
                 6888889******************9999877666 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.039
                 HHHHHHHHHTTSSSHHHHH CS
   DnaB_bind  23 avrealpllaripdpieRd 41 
                 +++e++++++ +p++i++d
  EGE26829.1 577 LLDEIIATVSTLPNEILQD 595
                 689**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5359.62
//
Query:       EGE26830.1  [L=64]
Description: hypothetical protein EA1_05082 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.068   13.3   0.1       0.09   12.9   0.1    1.2  1  SPC12     Microsomal signal peptidase 12 kDa subunit (SPC12)
        0.2   11.0   0.0       0.23   10.8   0.0    1.1  1  TraE      TraE protein


Domain annotation for each model (and alignments):
>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     1e-05      0.09      13      40 ..      14      41 ..       9      47 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
       SPC12 13 lqvilvlsaviafivGyitqdlkltlyi 40
                +++++ + ++++f++Gy++ + +++ y+
  EGE26830.1 14 VKILVGVLCLLSFVAGYFAHQSRQMNYC 41
                57899999***************99987 PP

>> TraE  TraE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.6e-05      0.23       8      41 ..       2      35 ..       1      40 [. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.6e-05
        TraE  8 srlknllaqnnllalllavllaanlllgslilra 41
                +++k ++ qn+++++l++vl++ + ++g++++++
  EGE26830.1  2 NKNKPVILQNSGVKILVGVLCLLSFVAGYFAHQS 35
                688999************************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 501.37
//
Query:       EGE26831.1  [L=250]
Description: glutathione S-transferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-09   37.9   0.4    4.1e-09   36.7   0.1    1.8  2  GST_N     Glutathione S-transferase, N-terminal domain
      1e-08   35.5   0.1    1.8e-08   34.6   0.1    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    6.7e-07   29.5   0.0    1.6e-06   28.3   0.0    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    0.00043   20.2   0.0    0.00077   19.4   0.0    1.4  1  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0081   16.4   0.0      0.014   15.6   0.0    1.4  1  GST_C     Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1   1.1e-12   4.1e-09       3      75 ..      17      98 ..      16      99 .. 0.88
   2 ?   -3.2   0.0         3   1.1e+04      37      47 ..     149     159 ..     147     160 .. 0.66

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.1e-12
                EEEESSSTSHTHHHHHHHHH....HTT-EEEEEEECSTTTCGGC.HHHHHHCTTS-SSEEEET.....TEEEESHHHHHHHHH CS
       GST_N  3 ltlysirgsprahrirllla....akgveyevvpldfeageeks.pellklnplgkvPaLedn.....gkkltESraIleYia 75
                l+ly+  + +r++r+ +ll+    a g+ey+   ++++++   + + l +++p gk+P L+d+     +++l+ES  Il Y+ 
  EGE26831.1 17 LHLYHLNN-SRSFRVVWLLEelklAYGLEYQLHLIERDQKTFLApKNLEQIHPMGKAPILIDDrlpkgEQVLAESALILSYLL 98
                67888777.9**********7777789999999999877766666889999999***************************96 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3
                 TTCGGCHHHHH CS
       GST_N  37 ageekspellk 47 
                 ++++ksp+++k
  EGE26831.1 149 KARQKSPWFVK 159
                 56677777765 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.1   5.1e-12   1.8e-08       1      73 [.      19     103 ..      19     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 5.1e-12
                 EES-TTSHHHHHHHHHHHHHT--....EEEE---TTTT....HHHHHHH-TT--SSEEETT.....S-EEESHHHHHHHHHHHH-G CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekglp....vevvevtpgeh....deellaknplgkvPvLedd.....gealtdSlaIidyLeelypg 73 
                 Ly+ + S+ + rv ++L+e++l+    ++++ ++ +++    + +l +++p gk+P+L dd     +++l +S+ I+ yL ++y+ 
  EGE26831.1  19 LYHLNNSR-SFRVVWLLEELKLAygleYQLHLIERDQKtflaPKNLEQIHPMGKAPILIDDrlpkgEQVLAESALILSYLLKAYDS 103
                 88999998.6677778999998755558889998777666779999************9887877566***************985 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   4.4e-10   1.6e-06       6      67 ..      28      97 ..      25     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 4.4e-10
                HHHHHHHHHCT-....-EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-....CTTEEEESHHHHHHHH CS
     GST_N_2  6 hRvlialalkgl....ediisvvvlepkgfekseefprlnprgtVPvLwd....kdgqvineSseIlryl 67
                 Rv ++l++++l    e++++ +   +k f ++  + +++p g+ P+L+d    k+ qv++eS+ Il yl
  EGE26831.1 28 FRVVWLLEELKLayglEYQLHLIERDQKTFLAPKNLEQIHPMGKAPILIDdrlpKGEQVLAESALILSYL 97
                58888888886622226666668888899999999***************88865777***********9 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.2e-07   0.00077       9      67 ..     176     230 ..     149     231 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.2e-07
                 HHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHH CS
     GST_C_2   9 eqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWl 67 
                 +++ +al+ le  Lad+  ++ +q+++aDi  +  ++ +r +g    i + + n +aWl
  EGE26831.1 176 KNVMNALKMLEIALADKL-YLTGQFSAADIQMYLAVYGTRLRG---LIPQTHTNTHAWL 230
                 67899************8.999*********************...79999*******7 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.9e-06     0.014      26      92 ..     173     236 ..     151     237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.9e-06
                 HHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTS CS
       GST_C  26 ealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimar 92 
                 ++++ v+++l++le  l+ ++ + + +++ ADi ++ ++ +  rl++ ++ + + n +awl ++ +r
  EGE26831.1 173 ILDKNVMNALKMLEIALA-DKLYLTGQFSAADIQMYLAVYG-TRLRGLIP-QTHTNTHAWLGTCESR 236
                 678999************.55555669********977765.56666666.899*******999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2004.23
//
Query:       EGE26832.1  [L=888]
Description: DNA gyrase subunit A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.8e-149  497.6   0.0   3.8e-149  497.2   0.0    1.1  1  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
    6.7e-71  233.6   6.8    1.2e-12   47.1   0.0    6.4  6  DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  497.2   0.0  4.2e-153  3.8e-149       1     417 [.      29     506 ..      29     514 .. 0.97

  Alignments for each domain:
  == domain 1  score: 497.2 bits;  conditional E-value: 4.2e-153
  DNA_topoisoIV   1 RaiPsvrDGlKPvqRriLyamfkl.lnldkkekKvaqlvGevlgkYhPHGdaslydaivrlaqdfvgniplldpqGnfGsildgdkdAaaRYietr 95 
                    Ra+P+vrDGlKPv+RriLyam++l ++ +kk+ K+a++vG+v+gkYhPHGd+++ydaivr+aqdf++++ l+++qGnfGs+ dgd++Aa+RY+e++
     EGE26832.1  29 RALPDVRDGLKPVHRRILYAMHELgNDYNKKYLKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSM-DGDPPAAMRYTEMK 123
                    9********************************************************************************.************** PP

  DNA_topoisoIV  96 LskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeea...ellelvlgPdfptggg 188
                    ++k+++++l+++dketvd+++nyDgs+k P vlp++iPnlLvnGa+GIavGmat+++phnl+e+++a+ a+ +++++   el++++ gPdfptgg+
     EGE26832.1 124 MQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNLTEVLNACLAYAEDPNIstdELISHISGPDFPTGGI 219
                    ****************************************************************************9******************* PP

  DNA_topoisoIV 189 iigkeeikeayetgrGkikvrakveie.........e.ktivitElPigvntskliekieelvkkkkik.isdirdesdr.gvrivielkrgasee 272
                    i g+++i +ay+tg+G++++r++++ie         + ++i+ t +P++vn+++li++i++lv++kki+ i++irdesd+ gvr+ i+l+rg++ e
     EGE26832.1 220 IHGRSGIIDAYRTGKGRLHIRGRYHIEpmgdsgankDrERIIFTQIPYQVNKANLIKHIADLVNAKKIEgITEIRDESDKeGVRVAIDLRRGENCE 315
                    ***********************************967***************************************9988*************** PP

  DNA_topoisoIV 273 kvleklykktkLessisvnnlvlfdkkpkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkidevievirkskkekkakkeL 368
                    + +++l+++t Le+s+s+n+++l++++pk+++l++++ +f+++r+ev++rr+ ++l+k+ +r ++legl +al +id+++++i++s ++++a+++L
     EGE26832.1 316 VMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENL 411
                    ****************************************************************************************99999998 PP

  DNA_topoisoIV 369 iee.lse..........................................eqaeyllemrlrrLtkeeveklekeieelekeikelekllak...l 417
                    + +  ++                                          +q++++l+m+l rLt +e++kl+ e++e+  ei++l+ +l++   l
     EGE26832.1 412 LVRtWQSagvvamldaagaksirpemidgedlkapyglienktryrlspDQVNAILDMQLHRLTGLEQDKLTGEYQEILGEIARLTLILDDfdvL 506
                    888445489*****************************************************************************999984433 PP

>> DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.7e-12   1.6e-08       3      48 .]     548     593 ..     546     593 .. 0.97
   2 !   33.3   0.0   2.6e-12   2.4e-08       2      48 .]     597     646 ..     596     646 .. 0.97
   3 !   33.9   0.1   1.8e-12   1.6e-08       3      47 ..     655     697 ..     653     698 .. 0.95
   4 !   37.2   0.0   1.6e-13   1.5e-09       1      34 [.     701     740 ..     701     748 .. 0.85
   5 !   47.1   0.0   1.3e-16   1.2e-12       2      47 ..     774     820 ..     773     821 .. 0.94
   6 !   46.3   0.0   2.4e-16   2.1e-12       2      47 ..     825     870 ..     824     871 .. 0.97

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.7e-12
                    EEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEES CS
  DNA_gyraseA_C   3 llliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvvs 48 
                    +l++++ Gy+k  p+s++ +q+Rg+kG  +  +ke+d + ++lv+s
     EGE26832.1 548 VLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTS 593
                    89****************************************9986 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 2.6e-12
                    EEEEEETTSEEEEEEGGGS-BT-TTSCTEEGS...ETTTTSSEEEEEEES CS
  DNA_gyraseA_C   2 ellliTsnGyvkrfplselpeqgRgakGvkgi...klkegdklvsvlvvs 48 
                    ++l++T+ G+v+r++  e+p  +Rg+kG +++   +l+ ++ ++++l+v+
     EGE26832.1 597 HILCFTNTGRVFRLRGFEIPIASRGSKGRPLVnliNLESDELVTAILPVN 646
                    79*********************************************997 PP

  == domain 3  score: 33.9 bits;  conditional E-value: 1.8e-12
                    EEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEE CS
  DNA_gyraseA_C   3 llliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvv 47 
                    ++++T  G vkr+ ls++ +++ g  G ++i+l egd l++v+++
     EGE26832.1 655 VFFATASGTVKRVALSQFANLRAG--GLRAIDLAEGDTLIGVAIT 697
                    89********************77..****************987 PP

  == domain 4  score: 37.2 bits;  conditional E-value: 1.6e-13
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGS......E CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgi......k 34 
                    +e++l+++ G+++rf++ ++++++R akGv+g+      +
     EGE26832.1 701 QEIMLFSNEGKAIRFKEQSIRAMSRVAKGVRGMrvnllaT 740
                    58*******************************6644444 PP

  == domain 5  score: 47.1 bits;  conditional E-value: 1.3e-16
                    EEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTT.SSEEEEEEE CS
  DNA_gyraseA_C   2 ellliTsnGyvkrfplselpeqgRgakGvkgiklkeg.dklvsvlvv 47 
                    e+l++ +nG++kr+p++++p +gRg+kGv++ik++e+ + lv ++ v
     EGE26832.1 774 EILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERnGQLVKAIAV 820
                    6788889***********************************99887 PP

  == domain 6  score: 46.3 bits;  conditional E-value: 2.4e-16
                    EEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEE CS
  DNA_gyraseA_C   2 ellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvv 47 
                    +++li+++G  +r+p++++ + gR+a+Gvk+i++ +++ lv++++v
     EGE26832.1 825 DVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVGMACV 870
                    89*****************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 6836.13
//
Query:       EGE26833.1  [L=232]
Description: nucleoside-diphosphate-sugar epimerase-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-05   23.9   0.0    3.2e-05   23.5   0.0    1.2  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0028   17.6   0.0     0.0044   16.9   0.0    1.3  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
      0.066   12.5   0.0      0.099   11.9   0.0    1.2  1  DUF5103         Domain of unknown function (DUF5103)
       0.11   12.7   0.0       0.27   11.5   0.0    1.7  1  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   7.2e-09   3.2e-05       2     114 ..       6     114 ..       5     138 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 7.2e-09
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkee.qpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 +++G++  +G al+++l+     vi ++r + +  +a+ +    + +d++  +++ ++++   + da       g  ++++ +  +f++ n+ ++l+ +
  EGE26833.1   6 ILIGGSSRVGEALAQELALIYESVILITRTQPRAMSANMQ--VYHVADFRALASTIEMVAIGaDTDAFSC---LGVSKQQVPSHDEFYQVNVLYNLEFA 99 
                 679***************99888*******6555555544..5566666666666666665434444333...688888889999************** PP

                 HHHHHHTCTEEEEEE CS
   Epimerase 100 eaarkagvkrllfls 114
                 +a++++gv++++fls
  EGE26833.1 100 KACKQKGVQQFYFLS 114
                 *************98 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   9.8e-07    0.0044       1     108 [.       9     123 ..       9     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 9.8e-07
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE.--TT-CCHHHHHHT.T-SE.EEES---TCC.....HHHH........HH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevve.gdvtdvedlaealk.gada.Vvsalggggk.....deeg........ak 79 
                     G++ +vG +l++el+     +v +++R++ ++ +    ++++v + +d+   ++  e ++ gad+  +s+lg +++     d             
      EGE26833.1   9 GGSSRVGEALAQELALI-YESVILITRTQPRAMS----ANMQVYHvADFRALASTIEMVAiGADTdAFSCLGVSKQqvpshD--EfyqvnvlyNL 96 
                     8999**********999.479999***9999873....45665543566654444444434888767999988887566543..14544555555 PP

                     HHHHHHHHCT--EEEEEEETTTTSGCGCH CS
  NAD_binding_10  80 nivdaakeagvkRfvlvsaigvgdevpge 108
                       ++a+k++gv++f ++s  g++    ++
      EGE26833.1  97 EFAKACKQKGVQQFYFLSKEGADTP--NH 123
                     558*****************99953..32 PP

>> DUF5103  Domain of unknown function (DUF5103)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.2e-05     0.099      74     155 ..     139     226 ..     127     231 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.2e-05
     DUF5103  74 enSfnTlvpYthYelelPnenvrlklSG....NYllkvydeddeeel..vltrrFmvvenkvsvgaevkrstdvdenkshQqvefevn 155
                 + Sf+Tl  +  Y+l+lP+++++lk  G    N +l+ ++++++      + ++++++  k + + ++++ ++ ++++++Q ++  ++
  EGE26833.1 139 TLSFDTLAIFRLYRLTLPKHRLSLKSLGsqalNGVLSTLNKNKRALEpkQVAACMAITAYKHNHQPQLRTPNQATIITHEQMLNSVIR 226
                 57***********************999666666777777776321134889999999999999999999999999999999987775 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     6e-05      0.27       1      44 [.       6      49 ..       6      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
                EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEE CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglev 44
                i+i G +rvG++la+eL   ++ +v++i + + r+ ++  + ++v
  EGE26833.1  6 ILIGGSSRVGEALAQELALiYE-SVILITRTQPRAMSANMQVYHV 49
                68999**************777.6******999998887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1750.49
//
Query:       EGE26834.1  [L=48]
Description: hypothetical protein EA1_05102 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 406.49
//
Query:       EGE26835.1  [L=88]
Description: 30S ribosomal protein S20 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-27   94.0  16.4      7e-27   93.9  16.4    1.0  1  Ribosomal_S20p  Ribosomal protein S20
     0.0092   15.8   0.0      0.018   14.8   0.0    1.5  1  FtsK_gamma      Ftsk gamma domain
  ------ inclusion threshold ------
      0.078   13.0   0.1       0.18   11.8   0.1    1.6  1  DUF2680         Protein of unknown function (DUF2680)
       0.19   12.0   0.1       0.19   12.0   0.1    2.0  2  DUF4798         Domain of unknown function (DUF4798)


Domain annotation for each model (and alignments):
>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9  16.4   1.6e-30     7e-27       1      82 []       2      84 ..       2      84 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 1.6e-30
                    ..SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.-HHHHHHHHHHHHHHHHHHHCTTSSTCCHHHHHHHHHHHHHH CS
  Ribosomal_S20p  1 ANikSakKrirqnekrrlrNrsyksavrtaiKkvraaiea.dkekaqealkkaiskidkaakkgvihkNtAaRkkSrlakkin 82
                    AN+++a+Kr+rqn krr++N s++s+vrt+iK+v++aiea + e a+ea++ka+ +id++a kg+ihkN+AaR+kSrl+++i+
      EGE26835.1  2 ANSAQARKRARQNTKRRQHNASQRSMVRTYIKRVNSAIEAkSYELATEAYNKAVPVIDRMADKGIIHKNKAARHKSRLNAAIK 84
                    8*************************************8768888**********************************9986 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     4e-06     0.018      33      56 ..      51      74 ..      50      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4e-06
  FtsK_gamma 33 YnRAarlidqLeeeGiVgpaegsk 56
                Yn+A   id++ ++Gi+ +++ ++
  EGE26835.1 51 YNKAVPVIDRMADKGIIHKNKAAR 74
                *****************9998765 PP

>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     4e-05      0.18      14      53 ..      48      87 ..      43      88 .] 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
     DUF2680 14 qqiaelrKqivdKyVeaGllTkeqgekikkniDkrlkylk 53
                ++  ++   ++d  ++ G + k ++   k+++ +++k lk
  EGE26835.1 48 TEAYNKAVPVIDRMADKGIIHKNKAARHKSRLNAAIKALK 87
                5566777789************************999875 PP

>> DUF4798  Domain of unknown function (DUF4798)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   3.2      0.34   1.5e+03      15      31 ..       9      20 ..       1      45 [. 0.47
   2 ?   12.0   0.1   4.3e-05      0.19       9      47 ..      40      79 ..      32      88 .] 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.34
     DUF4798 15 ktralpkaRksrkrpar 31
                k     +aR++ kr  +
  EGE26835.1  9 K-----RARQNTKRRQH 20
                1.....22222222211 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.3e-05
     DUF4798  9 ksneee.ktralpkaRksrkrparkelsekekyyrHrrRY 47
                +++++e  t+a  ka +  +r+a k +  k+k  rH++R 
  EGE26835.1 40 EAKSYElATEAYNKAVPVIDRMADKGIIHKNKAARHKSRL 79
                44444425677889999*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1556  (0.0867868); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 646.01
//
Query:       EGE26836.1  [L=213]
Description: LuxR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-26   93.3   0.3    1.8e-26   92.5   0.3    1.4  1  Response_reg  Response regulator receiver domain
      2e-17   62.5   0.0    3.2e-17   61.8   0.0    1.4  1  GerE          Bacterial regulatory proteins, luxR family
    0.00023   20.7   0.0    0.00039   20.1   0.0    1.4  1  Sigma70_r4_2  Sigma-70, region 4
     0.0018   17.6   0.3     0.0044   16.4   0.1    1.7  2  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
  ------ inclusion threshold ------
      0.051   13.1   0.0       0.13   11.8   0.0    1.7  1  Sigma70_r4    Sigma-70, region 4
       0.11   12.3   0.0       0.24   11.3   0.0    1.5  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.3   6.2e-30   1.8e-26       1     111 [.       5     116 ..       5     117 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 6.2e-30
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   vl+vdD+ lvr++++++l+ + ++e+++ea dg++a+ ++++ ++d++llD+nmp+++G+e++++i++ +p+++v+++++ +++++    lkag+++
    EGE26836.1   5 VLVVDDHDLVRMGITRMLDdDPNIEVIGEAIDGDSAVIQVRAISPDVVLLDVNMPNINGVEATRRIKQFNPNIKVLAVSSLTAQPYPSMLLKAGVNG 101
                   8******************889*************************************************************************** PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   +++K    +e++ a+
    EGE26836.1 102 YITKGTPLDEMIRAI 116
                   **********99988 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   1.1e-20   3.2e-17       2      57 .]     149     204 ..     148     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 1.1e-20
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                  Ls+RE++v  ++++ +s+++IA++l++S+kTV++++ +i+ KL++ s+v l++la
  EGE26836.1 149 ALSEREKQVAMMVVNCQSTQQIADQLFVSAKTVNTYRYRIFDKLGIDSDVKLTHLA 204
                 7****************************************************997 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.3e-07   0.00039      10      54 .]     149     192 ..     147     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.3e-07
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +L+er++++ ++  ++  s+++IA +l +s +tV+++ +R   kL
    EGE26836.1 149 ALSEREKQVAMM-VVNCQSTQQIADQLFVSAKTVNTYRYRIFDKL 192
                   79*******999.8*************************987665 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.5   7.4e+03      32      38 ..     129     135 ..     128     138 .. 0.73
   2 !   16.4   0.1   1.5e-06    0.0044      17      46 ..     154     183 ..     154     185 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.5
  HTH_Tnp_ISL3  32 avArqlg 38 
                   +vA+ql 
    EGE26836.1 129 DVAEQLA 135
                   7888876 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.5e-06
  HTH_Tnp_ISL3  17 eayilelllesrsvkavArqlgvSwtTVwr 46 
                   e ++++++ +++s +++A+ql vS++TV+ 
    EGE26836.1 154 EKQVAMMVVNCQSTQQIADQLFVSAKTVNT 183
                   679*************************86 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.4e-05      0.13       3      48 ..     148     192 ..     147     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.4e-05
                 HHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   3 asLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 + L+ere++v  ++     + ++I+++l +S  +V     r ++kL
  EGE26836.1 148 DALSEREKQVAMMVVNCQ-STQQIADQLFVSAKTVNTYRYRIFDKL 192
                 78*********9999999.8999************88777777776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     8e-05      0.24      18      40 ..     165     187 ..     150     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8e-05
      HTH_23  18 lsvreIAreLgvsrrTvyrwlkr 40 
                 +s+++IA++L vs  Tv  ++ r
  EGE26836.1 165 QSTQQIADQLFVSAKTVNTYRYR 187
                 699**************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1570.26
//
Query:       EGE26837.1  [L=418]
Description: C-terminal processing peptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-44  149.9   0.4    4.8e-44  149.9   0.4    1.8  2  Peptidase_S41    Peptidase family S41
    1.4e-08   34.5   0.1    4.4e-08   32.9   0.1    2.0  1  PDZ_6            PDZ domain
    5.8e-08   32.9   0.1    1.2e-07   31.9   0.1    1.5  1  PDZ_2            PDZ domain
    9.6e-05   22.7   0.1     0.0002   21.7   0.1    1.5  1  PDZ              PDZ domain
    9.7e-05   22.3   0.1    0.00026   20.9   0.1    1.7  1  Tricorn_PDZ      Tricorn protease PDZ domain
  ------ inclusion threshold ------
      0.041   14.2   0.0      0.086   13.2   0.0    1.6  1  GRASP55_65       GRASP55/65 PDZ-like domain
      0.096   13.1   0.2       0.33   11.4   0.2    1.9  1  Trns_repr_metal  Metal-sensitive transcriptional repressor


Domain annotation for each model (and alignments):
>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.75   1.9e+03      22      61 ..     185     222 ..     169     228 .. 0.58
   2 !  149.9   0.4   1.9e-47   4.8e-44       2     165 ..     230     389 ..     229     390 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.75
                    HHHHHHTTSSEEEEE-TTB-EBEHHHHHHHHHCCSSSSEE CS
  Peptidase_S41  22 lkelkkknvkglilDlRnNgGGlldeavelaslflddgli 61 
                    ++ l+  ++ g  +D+++ + G  +++v++++   +++ i
     EGE26837.1 185 IQLLS--GIAGSSVDITYSRAGRSKQSVNVIRNQAQKSSI 222
                    33333..445566777777777777777777766555544 PP

  == domain 2  score: 149.9 bits;  conditional E-value: 1.9e-47
                    EEEEEES-BCCTHHHHHHHHHHHHHHTTSSEEEEE-TTB-EBEHHHHHHHHHCCSSSSEEEEEECTTSEEEEEEHTCSS-STT-BSSEEEEEE-TT CS
  Peptidase_S41   2 iGyiripsfsektkeelakalkelkkknvkglilDlRnNgGGlldeavelaslflddglivstrgrdgkkkkksktekaseevqykgplvvLvneg 97 
                    i++i++p f+++t++++ + l+ ++  +v+g+++DlRnN+GG ld+a+e+aslf+++++++++++r g +++ ++  +    v  ++p+++L n++
     EGE26837.1 230 IAVIKLPVFQNNTRQDIIDRLALIE-GQVRGVVIDLRNNPGGVLDSAAEVASLFMRKQVVTQVQNRSGIERVIETHGSP---VLESMPVIILQNRY 321
                    89*******99*************9.9********************************************66654444...57************ PP

                    BBTHHHHHHHHHHHTTSEEEEES--SB-EEEEEEEE-TTSSEEEEEEEEEEETTSBCTTTTS---SEE CS
  Peptidase_S41  98 saSaseifagalkdngratlvGertfGkgtvqsvvelndgsalkltiakyltpdgrsiekkGvePdie 165
                    saSa+e++a al+ +gra +vGe ++Gkg+vqsv+ l++  ++k+t+a+yltp+g++i+k+Gv Pd+ 
     EGE26837.1 322 SASAAEVLASALQTHGRAMIVGEASYGKGSVQSVIALGNHQGIKITTAHYLTPNGKKIDKIGVVPDVS 389
                    ******************************************************************85 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   1.7e-11   4.4e-08       1      53 [.     146     199 ..     146     202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.7e-11
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsla.dvaallrgsagesvvlv 53 
                 vVt+V ++sPA  AG+ vGD++ +++++ +++ +++ d+++ll g ag+sv ++
  EGE26837.1 146 VVTEVTADSPAKSAGINVGDYLHQIGDIKLNQSQTEnDIIQLLSGIAGSSVDIT 199
                 79*********************************99***********999887 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   4.8e-11   1.2e-07      12      77 ..     141     208 ..     130     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 4.8e-11
                 -..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHH..TS-TT-EEEEEEEETTEEEE CS
       PDZ_2  12 dtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislll..kkkpGdtVkltvlRdgkkkt 77 
                 ++   +v++V+ ++Pa+ ag+  gD + ++++ k++++++ +  ++  ++ +G+ V +t++R g+ k+
  EGE26837.1 141 QDAHWVVTEVTADSPAKSAGINVGDYLHQIGDIKLNQSQTENDIIQllSGIAGSSVDITYSRAGRSKQ 208
                 345789*****************************888877755544499************987653 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   7.6e-08    0.0002      23      77 ..     140     196 ..     122     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.6e-08
                 SSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTS.HHHHHHHHHHTTTS.EE CS
         PDZ  23 rgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenv.sheeavqaikgskg.kv 77 
                 ++d + +v+ev ++++a+ +g++vGD + ++++ ++++  ++ +++q++ g+ g +v
  EGE26837.1 140 SQDAHWVVTEVTADSPAKSAGINVGDYLHQIGDIKLNQSqTENDIIQLLSGIAGsSV 196
                 256899***************************999987577778888877766555 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1     1e-07   0.00026      28      88 .]     151     212 ..     142     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1e-07
                  S-B-GGGGGS---.TT-EEEEETTEE-B...TTB-HHHHHHTTTTSEEEEEEE-STT-EEEEEE CS
  Tricorn_PDZ  28 earSPLaepGvnvreGdlilavdgepvs...kekgiaelLvgkagkeveLtvkrkdgkarrvvv 88 
                   a SP +  G+n  +Gd++ ++ + +++   +e++i +lL g ag++v +t++r++  +++v v
   EGE26837.1 151 TADSPAKSAGIN--VGDYLHQIGDIKLNqsqTENDIIQLLSGIAGSSVDITYSRAGRSKQSVNV 212
                  688*********..7*******9998862215689*******************9998888876 PP

>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.4e-05     0.086      29      87 ..     131     189 ..     108     244 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.4e-05
                 SEEEEEEE-TTTTTS-EEEEEEBTTSHHHHHT--TTTEEEEEEE.SSSS...STSCSHHHHT CS
  GRASP55_65  29 GlslrlaslekaaeevwhvldvlegsPaakagLvpksDYiiGldkgllk...geedlselve 87 
                 G+ l+     ++++  w v +v+ +sPa++ag+ +  DY+  + +  l+    e+d+++l++
  EGE26837.1 131 GVGLKAV--WRSQDAHWVVTEVTADSPAKSAGI-NVGDYLHQIGDIKLNqsqTENDIIQLLS 189
                 4444333..3357899****************8.5789997666644442225555555555 PP

>> Trns_repr_metal  Metal-sensitive transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00013      0.33       2      19 ..     243     260 ..     242     266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
                      HHHHHHHHHHHHHHHHHH CS
  Trns_repr_metal   2 kkkllnrLkrieGQvrgi 19 
                      +++++ rL  ieGQvrg+
       EGE26837.1 243 RQDIIDRLALIEGQVRGV 260
                      799**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3207.94
//
Query:       EGE26838.1  [L=520]
Description: phosphoglyceromutase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-80  270.3   0.4    1.6e-80  270.0   0.4    1.0  1  Metalloenzyme  Metalloenzyme superfamily
    2.6e-76  255.8   0.6    3.9e-76  255.3   0.6    1.2  1  iPGM_N         BPG-independent PGAM N-terminus (iPGM_N)
    0.00016   21.4   0.1    0.00027   20.6   0.1    1.4  1  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
     0.0031   17.0   0.2     0.0062   16.0   0.0    1.6  2  Sulfatase      Sulfatase
     0.0079   16.3   0.2      0.019   15.0   0.2    1.6  1  PglZ           PglZ domain


Domain annotation for each model (and alignments):
>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.0   0.4   4.6e-84   1.6e-80       3     247 ..       9     507 ..       7     508 .. 0.99

  Alignments for each domain:
  == domain 1  score: 270.0 bits;  conditional E-value: 4.6e-84
                    EEEEEETTBB----GGGTTHHHS--HHHHHHHHH.......SEEEEEESSSTT----HHHHHHHH............................... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................... RF
  Metalloenzyme   3 vvlvvlDGlGeapadelnaihvAktPtldkLkkeaPerwlikahgtavglpeddmgnsevgHlel............................... 67 
                    +vl++lDG+G++++++ na+ vA+tP+ld+L +++P+  li+ +g++vglpe++ gnsevgH++l                               
     EGE26838.1   9 HVLMILDGIGHREETKDNAVAVANTPNLDALFASYPNG-LISGSGMDVGLPEGQFGNSEVGHMNLgagrilfqdstrimneiasgeffnnsalida 103
                    69************************************.9******************************************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Metalloenzyme  68 ................................................................................................ 67 
                                                                                                                    
     EGE26838.1 104 iqatlnnkgavhilgllsdggvhahidhikaaaklalsqgamqvfvhafldgrdtppqsakgyvtdiedyftqinqefegnvkiasiigrfyamdr 199
                    ************************************************************************************************ PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Metalloenzyme  68 ................................................................................................ 67 
                                                                                                                    
     EGE26838.1 200 dkrwdrvescyqlltegksvrtadnaldaieqayaagetdefiaatfieddgvigdndgvifmnfradrareislafvdtnfdgfnrhivpelsaf 295
                    ************************************************************************************************ PP

                    ........................................HHHHTT-----EEEEEEEE-S---SSHHHHHT--EEEE--SHHSTT--HHHHHHHH CS
                    ........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme  68 ........................................lrisetvkfahvtffwnggrsgyfnpleereeipsdtvitfdlqpemkavevaeka 123
                                                            lri+et+k+ahvtff++ggr+   n+ e+r+ i+s+ v t+dl+pem+a ev+ek+
     EGE26838.1 296 vmltkysdelennpktdiayhptsltntlgeylqnlgktqLRIAETEKYAHVTFFFSGGREALYNG-EDRILINSPDVKTYDLKPEMSAFEVTEKL 390
                    ******************************************************************.***************************** PP

                    HHHH.CC.-SEEEEEE-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTS-TTTEEEEEE-SSB--TTTSS.........-----EEEEEESTT--- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 124 ldailsgkfdlvvvniknaDmvGHtgdleatiaaieaaDeavkeildaieqvdgilvvtADHgnaedmvkrdk.qplTsHtlepVPilivgkglap 218
                     dai sgk+d+++vn++n DmvGH+g + a+++a+ea+D++++e++++i++ +g l++tADHgn+e+m++ +  q +T+Ht+e VP++++g++   
     EGE26838.1 391 NDAIDSGKYDVLIVNYANGDMVGHSGVFDAAVKAVEAVDQCIGEVVKHIRAAGGHLLITADHGNCEQMQDYQSgQVHTQHTTELVPFIYIGDK--- 483
                    *********************************************************************96667******************7... PP

                    -S--SSHHHHTT-TTEEEEGGGHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 219 dkvkegakfrekggLanvaatllnllgle 247
                         +a++r+ g+L++v++tll+l+gl+
     EGE26838.1 484 -----KATVRRGGKLCDVSPTLLDLMGLD 507
                    .....578999***************997 PP

>> iPGM_N  BPG-independent PGAM N-terminus (iPGM_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.3   0.6   1.1e-79   3.9e-76       1     214 [.      85     302 ..      85     303 .. 0.94

  Alignments for each domain:
  == domain 1  score: 255.3 bits;  conditional E-value: 1.1e-79
                 HHHHHHCTGGGG-HHHHHHHHHHHHCTSEEEEEEE-SS--SS--CHHHHHHHHHHHHTT-SEEEEEEEE-SSSSTTT-HHHHHHHHHHHHHHCT..... CS
      iPGM_N   1 inkaiedgslfenealkeaiekakkngkalHllGLlSdGgVHShidhllallelakeegvkkvvvhaflDGRDtapksaleyleeleeklkelg..... 94 
                 i ++i++g++f+n+al +ai+++ +n++a+H+lGLlSdGgVH+hidh++a ++la ++g+ +v+vhaflDGRDt+p+sa++y++++e+++++++     
  EGE26838.1  85 IMNEIASGEFFNNSALIDAIQATLNNKGAVHILGLLSDGGVHAHIDHIKAAAKLALSQGAMQVFVHAFLDGRDTPPQSAKGYVTDIEDYFTQINqefeg 183
                 6789***************************************************************************************99533322 PP

                 --EEEEEEEHHHHT--SS-HHHHHHHHHHHCCSSSEEECTTHHHHHHHHHHTT--GGG---EEE...TCCGGS--TT-EEEE----CCCCHHHHHHHHS CS
      iPGM_N  95 vgkiasvsGRyyaMDRdkrwervekaydalvkgegeskaesaveaieesyakgetDefveptviaeegkkegtikdgDaviffNFRaDRareltraltd 193
                 + kias++GR+yaMDRdkrw+rve  y++l++g+  ++a++a +aie++ya+getDef+ +t+i    +++g i d+D vif+NFRaDRare++ a++d
  EGE26838.1 184 NVKIASIIGRFYAMDRDKRWDRVESCYQLLTEGKSVRTADNALDAIEQAYAAGETDEFIAATFI----EDDGVIGDNDGVIFMNFRADRAREISLAFVD 278
                 457******************************98788889***********************....7889*************************** PP

                 TTHHCC....--TT-EEEESS-S- CS
      iPGM_N 194 kefkefe...kakklklvtmteYd 214
                 ++f++f+    ++  ++v++t+Y+
  EGE26838.1 279 TNFDGFNrhiVPELSAFVMLTKYS 302
                 ******8776666678*******8 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   7.6e-08   0.00027     165     233 ..     385     453 ..     267     492 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 7.6e-08
                   HHHHCT......SSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES-- CS
  Phosphodiest 165 vlekel......ekpdlllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHG 233
                   +++++l      +k+d+l+v++ + D vgH+ G  + +  +a++ vD++ig+ ++ ++         +++++DHG
    EGE26838.1 385 EVTEKLndaidsGKYDVLIVNYANGDMVGHS-GVFDAA-VKAVEAVDQCIGEVVKHIRAA----GGHLLITADHG 453
                   3344445555679*****************5.577755.689****************99....779******** PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.2   4.4e+03     113     165 ..     182     229 ..     148     243 .. 0.57
   2 !   16.0   0.0   1.7e-06    0.0062     209     308 ..     416     505 ..     344     506 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.2
                 HCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHH CS
   Sulfatase 113 yknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefl 165
                   n    +++g+  + +++k+++++e + + l      ++ + r +d+al+ +
  EGE26838.1 182 EGNVKIASIIGRFYAMDRDKRWDRVESCYQLL-----TEGKSVRTADNALDAI 229
                 23555555666666666666666666666554.....4555555555555554 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEEGGGHHHHHHHHT CS
   Sulfatase 209 qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvseelvshiDlfptildla 307
                  + +a   +ve vD++ig+v++ +     +    +++t+Dhg   e++  +++ g+   + +    vP++  +   k++ ++     + D+ pt+ldl+
  EGE26838.1 416 GVFDAAVKAVEAVDQCIGEVVKHI----RAAGGHLLITADHGN-CEQM-QDYQSGQV-HTQHTTELVPFIYIGD--KKA-TVRRGGKLCDVSPTLLDLM 504
                 566778899***************....777778********9.5553.44444444.5677777788775543..344.5788999************ PP

                 T CS
   Sulfatase 308 g 308
                 g
  EGE26838.1 505 G 505
                 9 PP

>> PglZ  PglZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   5.4e-06     0.019     110     171 ..     397     456 ..     370     461 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.4e-06
        PglZ 110 kdkevvyivhnkvDalgdkasteqksfeaveeslk....elkelvkslleengykvlltaDHGfiy 171
                 ++++v+ +   + D++g++      +f+a+ ++++     + e+vk++  + g ++l+taDHG+  
  EGE26838.1 397 GKYDVLIVNYANGDMVGHSG-----VFDAAVKAVEavdqCIGEVVKHIRAA-GGHLLITADHGNCE 456
                 56777777777778888844.....44444444443333677888899888.***********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3726.57
//
Query:       EGE26839.1  [L=40]
Description: hypothetical protein EA1_05127 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 297.59
//
Query:       EGE26840.1  [L=195]
Description: TetR family transcription regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-14   51.6   0.0    9.2e-14   51.0   0.0    1.3  1  TetR_N     Bacterial regulatory proteins, tetR family
    1.9e-13   50.7   0.0    3.1e-13   50.0   0.0    1.4  1  TetR_C_28  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0     1e-17   9.2e-14       2      47 .]      33      78 ..      32      78 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1e-17
                HHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  2 ldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                + aA  l+   G ++++++++A+ AG+skg l+++F++KeeLl+a+
  EGE26840.1 33 IMAAKHLMVSDGVANLSMQKVADTAGTSKGGLFHHFKNKEELLNAV 78
                679****************************************997 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   3.5e-17   3.1e-13       1      91 [.     102     191 ..     102     195 .] 0.82

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 3.5e-17
                 HHHHHHHHHHHTS-.....-HHHHHHHHHGGGSHHHHHHHHHHHHHHS--TTGG-HH.HHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHH CS
   TetR_C_28   1 grftraYlratfde...eerallaallaalaedpellepwrewyrrwlerleadgld.pvlatlvrlAadGlwlaellglppldpeeraallerL 91 
                 grft+aYl+++f++   ++++ +++ll a+ +d ++ e w++w+++ +++++  ++d  ++ ++vr+A++G+ l   l   +   +   ++ e+L
  EGE26840.1 102 GRFTKAYLQVIFQDskiGMNSNWSGLLTAIHADANMFEVWQNWMAQKQKQFA--ATDsHPQYQVVRYAIEGAQLDTELKSNQ---AKQHEIYETL 191
                 89**********5336788*********************************..666678***********99887766666...4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1387.43
//
Query:       EGE26841.1  [L=437]
Description: permease family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-81  273.4  51.9      3e-81  273.1  51.9    1.1  1  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
       0.02   15.3  15.0       0.02   15.3  15.0    3.8  4  MFS_MOT1         Molybdate transporter of MFS superfamily
      0.045   13.3   0.8      0.045   13.3   0.8    5.4  5  AcrZ             Multidrug efflux pump-associated protein Acr


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.1  51.9     5e-85     3e-81       1     388 [.      17     397 ..      17     398 .. 0.98

  Alignments for each domain:
  == domain 1  score: 273.1 bits;  conditional E-value: 5e-85
                      HHHHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-....HHHHHHHHHH CS
  Xan_ur_permease   1 gqllllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvtalmialGsaedieialagllg 94 
                      +q++++gl+++lam+++++vvP ++++a    +++++++ at+l++G++++l+ l+++ +++i +++s++++ta++++lG    ++++++++lg
       EGE26841.1  17 RQEIIAGLTTFLAMVYSIIVVPNMLSAA---GFPAESVFVATCLVAGLGSILIGLWANVPMAIGCAISLTAFTAFSLVLG----QGVSIPVALG 103
                      699*************************...38999********************************************....7********* PP

                      HHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHH CS
  Xan_ur_permease  95 allvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglfsqlpiL 188
                      a++++gv+f+lis+tg+r+++ r++p  ++++  ++iGl+l+ ia+++vg++ ++  gl+v+ +++++l+v+++lv+l+ ++ l+ l  +++iL
       EGE26841.1 104 AIFLMGVVFTLISVTGVRAWILRNLPASIAHGAGIGIGLFLLLIAANGVGLVIKNDAGLPVTMGEFMSLPVILSLVGLAAIIGLERLRIKGSIL 197
                      ****************************************************9887779*********************************** PP

                      HHHHHHHHHHHHHH.HTTSSHHHHS-SS-----------HH....H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TII..IIIHHHHHHHHH CS
  Xan_ur_permease 189 igiiagwllalfmg.ivnlspevseapwfqlpsplkfgtpl..fnlgliltvlavalvavvesvGdiravakvvgrslkp..kpdlrralladG 277
                      + ii+++++ l ++  v+ ++++ + p f  +s+++  +    +n++++++v+a++++a+++++G+irava+++++ +k+   ++ +ral+ d+
       EGE26841.1 198 WVIITITMIGLLFDpAVKSDGAILKVPSFGSDSLFMQMDVMgaLNTAILPVVFALVMTAIFDATGTIRAVAGQANLLDKDgqIINGGRALTSDS 291
                      *******************************999888777688************************************999************ PP

                      HHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHH CS
  Xan_ur_permease 278 latllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdldsarnll 371
                      +++l+sg++G++p+++y+e+++++a++    +++++ta+v+ +l+ l+ ++++l+ ++P+++ ++++l+++g++++s+vs l+++d+  a++ l
       EGE26841.1 292 VSSLFSGIFGTAPAAVYIESAAGTAVG----GKTGLTAIVVGVLFLLMLFFQPLAFLVPSYA-TAPALMYVGLLMLSNVSRLDFEDFVGAMSGL 380
                      ***************************....*******************************.******************************* PP

                      HHHHHHHHHHH-----S CS
  Xan_ur_permease 372 ivavslvlGlgvatvpe 388
                      i+av++vl+++++t+++
       EGE26841.1 381 ICAVFIVLTANIVTGIM 397
                      *************9987 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3  15.0   3.4e-06      0.02      13     110 ..      26     143 ..      18     144 .. 0.81
   2 ?   -2.5   0.2       1.2   6.9e+03      59      59 ..     185     185 ..     161     214 .. 0.46
   3 ?    9.5   8.4    0.0002       1.2       7      87 ..     238     343 ..     235     366 .. 0.78
   4 ?   -1.7   3.9      0.62   3.7e+03      56      94 ..     379     416 ..     348     433 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.4e-06
    MFS_MOT1  13 Tllnlvialaala..........slsltalllsvGlmnlltglfggvPmchgAgglaaqyrf..........gartgaagillGlvllllgltgllerl 91 
                 T+l +v +++++           +  + a++l++Gl  +l+gl+ +vPm+ g+++ ++ ++            +   +a++l+G+v+ l+++tg+  ++
  EGE26841.1  26 TFLAMVYSIIVVPnmlsaagfpaESVFVATCLVAGLGSILIGLWANVPMAIGCAISLTAFTAfslvlgqgvsIPVALGAIFLMGVVFTLISVTGVRAWI 124
                 5556666666555566666666644577999*******************8888877774446888887777888899********************* PP

    MFS_MOT1  92 lrliPksvlgglllgaGle 110
                 lr +P s+ +g  +g Gl 
  EGE26841.1 125 LRNLPASIAHGAGIGIGLF 143
                 ***********99999985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
    MFS_MOT1  59 a 59 
                 +
  EGE26841.1 185 I 185
                 1 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0002
    MFS_MOT1   7 lgdlglTllnlvialaala.......................slsltalllsvGlmnlltglfggvPmc...hgAgglaaqyrfgartgaagillGlvl 79 
                 +g l   +l++v+al+++a                        ++ +++l+s ++  l++g+fg  P +     A+g a     g +tg  +i++G+++
  EGE26841.1 238 MGALNTAILPVVFALVMTAifdatgtiravagqanlldkdgqIINGGRALTSDSVSSLFSGIFGTAPAAvyiESAAGTAV----GGKTGLTAIVVGVLF 332
                 77788889*********9999999999999999999999998778999999******************76533333333....579**********99 PP

    MFS_MOT1  80 lllgltg...l 87 
                 ll+ ++     
  EGE26841.1 333 LLMLFFQplaF 343
                 99877764332 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.62
    MFS_MOT1  56 gglaaqyrf..gartgaagillGlvllllgltgllerllrl 94 
                 g + a   f      ++ gi+lG   l+lg +    ++++l
  EGE26841.1 379 GLICAV--FivLTANIVTGIMLGFGTLVLGRLI-SGEFNKL 416
                 444444..3334445556777777777777664.4445554 PP

>> AcrZ  Multidrug efflux pump-associated protein AcrZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.091   5.4e+02      24      43 ..      29      48 ..      24      52 .. 0.65
   2 ?   13.3   0.8   7.6e-06     0.045      19      42 ..      98     121 ..      90     123 .. 0.88
   3 ?    3.6   0.4    0.0081        48      10      27 ..     243     258 ..     235     262 .. 0.79
   4 ?   -1.9   1.2      0.41   2.5e+03       8      24 ..     383     399 ..     377     406 .. 0.71
   5 ?    0.7   1.2     0.064   3.9e+02      17      30 ..     421     434 ..     418     436 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.091
        AcrZ 24 glIygLGEvfNviSkiGhrk 43
                 ++y +  v N++S+ G + 
  EGE26841.1 29 AMVYSIIVVPNMLSAAGFPA 48
                55666666677777777665 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 7.6e-06
        AcrZ  19 mAiiLglIygLGEvfNviSkiGhr 42 
                 + + Lg+I+++G vf +iS +G r
  EGE26841.1  98 IPVALGAIFLMGVVFTLISVTGVR 121
                 6789****************9965 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0081
        AcrZ  10 vaviMvPvvmAiiLglIy 27 
                 +a+   Pvv A+++ +I+
  EGE26841.1 243 TAI--LPVVFALVMTAIF 258
                 444..5********9998 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.41
        AcrZ   8 LvvaviMvPvvmAiiLg 24 
                  v+ v+ + +v  i+Lg
  EGE26841.1 383 AVFIVLTANIVTGIMLG 399
                 45666777788888887 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.064
        AcrZ  17 vvmAiiLglIygLG 30 
                 v++A++L + y LG
  EGE26841.1 421 VIIAVVLVAFYALG 434
                 89**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3073.62
//
Query:       EGE26842.1  [L=166]
Description: ahpC/TSA family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-23   82.4   0.0    3.2e-23   82.0   0.0    1.1  1  AhpC-TSA  AhpC/TSA family
      5e-08   32.8   0.0    5.9e-08   32.5   0.0    1.1  1  Redoxin   Redoxin
    0.00078   19.0   0.0    0.00089   18.8   0.0    1.1  1  DUF899    Bacterial protein of unknown function (DUF899)


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   5.4e-27   3.2e-23       5     120 ..      11     140 ..       9     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 5.4e-27
                 ----EEE.....STTCEEEECHHH...TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHH CS
    AhpC-TSA   5 apdfelk.....nadgetvslsdy...kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkva 95 
                  p+fel+     +++ + v+l+++   + + ++l+fypkd++++C  ++ +++ +  +++++g+ ++gvs d  +sh++fi+k+ l ++l+sD+++k++
  EGE26842.1  11 LPSFELTmvaadTQEATAVQLNQLlnqSHQGLILYFYPKDNTQGCSIQAVDFSHHKAKLESLGFYILGVSRDGIKSHQNFINKKALSIDLISDTDEKLC 109
                 589999999885666778******864449********************************************************************* PP

                 HHTT-EETT......TTECSCEEEEE-TTSB CS
    AhpC-TSA  96 kaygvlkee......kglalratfvidkegk 120
                 + y+v+ke+      + + +r+tfv +k+g 
  EGE26842.1 110 QYYDVIKEKkmygktHLGVVRSTFVYNKNGE 140
                 ********9********************96 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   9.9e-12   5.9e-08       6     136 ..      11     150 ..       6     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 9.9e-12
                 B---ECCEET...TCEEEEEHHH...HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHH CS
     Redoxin   6 aPdftlplaa...tdgnsvslse...fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaft 98 
                 +P+f+l+ +a   ++ ++v+l +   +  + ++++f+p   +  Cs +++++ + +++l++ g+ +++v+ d     ++f++k+ l++ ++sD + ++ 
  EGE26842.1  11 LPSFELTMVAadtQEATAVQLNQllnQSHQGLILYFYPKDNTQGCSIQAVDFSHHKAKLESLGFYILGVSRDGIKSHQNFINKKALSIDLISDTDEKLC 109
                 577774444400156678888887533444599****************************************************************** PP

                 HHTT-TTEEE.GGG....EEE-EEEEEEETTEEEEEEESSSC CS
     Redoxin  99 kalGlrleedaseg....lrtpryavidedgkvvylevepep 136
                 + +++  +e++  g       ++++v +++g  +  ++ +  
  EGE26842.1 110 QYYDVI-KEKKMYGkthlGVVRSTFVYNKNGEMIGSFRDVKA 150
                 ****65.66665558898788999999999999888887765 PP

>> DUF899  Bacterial protein of unknown function (DUF899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.5e-07   0.00089      52     168 ..      23     137 ..       5     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-07
      DUF899  52 dgeeGkvsLadlFegrsq.LivyhfmfgpdaeegCpgCslladhvdgalahLeardvtlavvsraplekleaykrrmGwtlpwvssaesdfnrdfnvsl 149
                   e+  v+L +l +  +q Li+y  ++ +d   + +gCs+ a ++ ++ a+Le+ ++ +  vsr  +++ +++ +++  +++++s++++++ + + v  
  EGE26842.1  23 TQEATAVQLNQLLNQSHQgLILY--FYPKD---NTQGCSIQAVDFSHHKAKLESLGFYILGVSRDGIKSHQNFINKKALSIDLISDTDEKLCQYYDVIK 116
                 44556678888888555515554..23333...346899******9**************************************************999 PP

      DUF899 150 eeeqaseelpgl..svflrdd 168
                 e++ + + + g+  s+f+ ++
  EGE26842.1 117 EKKMYGKTHLGVvrSTFVYNK 137
                 988877777776555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1230.86
//
Query:       EGE26843.1  [L=386]
Description: glycosyl transferases group 1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-14   52.1   0.0      1e-13   51.2   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    3.2e-13   50.1   1.3      4e-12   46.5   0.6    2.4  2  Glyco_transf_4   Glycosyltransferase Family 4
    2.9e-11   43.9   0.0    4.7e-11   43.3   0.0    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1
    9.6e-08   32.6   0.0    2.2e-07   31.4   0.0    1.6  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    6.6e-06   26.2   0.2    1.1e-05   25.4   0.2    1.4  1  Glyco_trans_4_2  Glycosyl transferase 4-like


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   2.8e-17     1e-13       8     160 ..     197     356 ..     192     366 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 2.8e-17
                      HTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES..........STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHC CS
  Glycos_transf_1   8 klgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG.........ngeeekelkklaeelelsdnviflgevsredleellkn 92 
                      + ++ e kk +++   + +e g++ li+ +  l+++  p+++ +i            + +e+ +++l + l+l+d+v f+g+ +  d+ e+l++
       EGE26843.1 197 QFPELEHKKWLVFPTPIGPEYGQEWLIDILGNLQEK-FPKIHAIIMDddptarihqCVFYEDFVQRL-HTLGLQDRVSFIGKNP-PDMREWLSS 287
                      555567888889999999***************999.*****************9545555555555.99*************9.88******* PP

                      ESEEEEEESS.BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTT.SEEEE-TT-HHHHHHHHHHHHHSHH CS
  Glycos_transf_1  93 adifvlpsis.EgfGivllEAmaaglpviasnaggpaevvkdge.tGllvkpnnaealaeairklledee 160
                      a+i++  +   E+ G+++l A+ +g+pvi  + g +a+++ d   +Gl+++++ a +l + ++ ll+++ 
       EGE26843.1 288 ANIVLSLANHpESIGMTALQAIHLGTPVIGWAKGAFADILGDLYpQGLVKEQT-AIMLCKSVKFLLSNPI 356
                      *******999**********************************666666665.*************994 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.6   1.1e-15     4e-12       5     150 ..      16     149 ..      15     179 .. 0.74
   2 ?    1.8   0.0     0.059   2.1e+02      49     101 ..     266     317 ..     229     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.1e-15
  Glyco_transf_4   5 erhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrr...rlg 96 
                     er ++ +++ L ++Ghe  ++ +++++     + +    ++++lp +k+ ++ l + ++lr+++++++pD++H+hs  ++++ ++a       ++
      EGE26843.1  16 ERGIYPISHTLIKAGHESIIIGSAPSDSKLVVRLVRDGAIYYRLPMPKKSWWALIHTLKLRQIIEQHQPDIIHIHSRTPAWVLYWAMHSfpnDKR 110
                     6778889999***********666666666662244445556678999999******************************99999888999999 PP

  Glyco_transf_4  97 iplVltvHglye.....krllkarlkplsrllralerrllrradrviavSeatadelre 150
                     ++++ ++ g y+     k                    +l ++d +i  S+++ +++ +
      EGE26843.1 111 PKIISSLYGFYPvnsysK--------------------ALFHVDLLISASKSIDKHFNK 149
                     999999999994322220....................234555555555555555544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.059
  Glyco_transf_4  49 pllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVl 101
                      l  r  ++  +++++r++l   ++ +  a++p ++g  +l + + lg p++ 
      EGE26843.1 266 GLQDRVSFIGKNPPDMREWLSSANIVLSLANHPESIGMTALQAIH-LGTPVIG 317
                     45666777788899999999988888889******9999999998.****996 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.3e-14   4.7e-11       5     133 ..     208     353 ..     204     354 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 1.3e-14
                      EEES---GG.GTHHHHHHHHHHHH.H.H.EEEEEES---..........HHHHHHHT..T-T.TEEEE---.THHHHHHHH-SEEEE--...-- CS
  Glyco_trans_1_4   5 lfvGrleenvkgvdllleavpllrkk.d.vrlvivGdgp.rp.......eeleelaa..gleerveftGfv.edlaellaaadvfvaPs...eg 82 
                      +f   +  ++ g+++l++ +  l++k + ++ +i+ d+p  +       e++ ++++  gl++rv+f G+  +d++e+l++a++++      e+
       EGE26843.1 208 VFPTPI-GPEYGQEWLIDILGNLQEKfPkIHAIIMDDDPtARihqcvfyEDFVQRLHtlGLQDRVSFIGKNpPDMREWLSSANIVLSLAnhpES 300
                      555555.35589************99846*******99865577888885555566568************999***********99888999* PP

                      -SHHHHHHHHTT-EEEE-TGGGTTT--T...TSSEE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4  83 fglkllEamaaglpvVatdvggiaevvg...engllvppgdpealaeailrLle 133
                      +g+++l+a  +g+pv+  + g++a+++g    +g lv+++ +  l + +  Ll+
       EGE26843.1 301 IGMTALQAIHLGTPVIGWAKGAFADILGdlyPQG-LVKEQTAIMLCKSVKFLLS 353
                      ********************999**886342344.6665667677776666665 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   6.2e-11   2.2e-07       6      91 ..      18     101 ..      15     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 6.2e-11
  Glyco_trans_4_4   6 yvaelaraLaarGheVtvltpapapg..apeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahsptaglaarla 91 
                       ++ +++ L ++Ghe  ++ +ap  +    +l++dg+ ++rlp+p +++  + l ++  lr+++  ++ +pd++h+hs t +++  +a
       EGE26843.1  18 GIYPISHTLIKAGHESIIIGSAPSDSklVVRLVRDGAIYYRLPMPKKSW--WALIHTLKLRQII--EQHQPDIIHIHSRTPAWVLYWA 101
                      56778999**********998777774444699************9985..8899*********..************6655544444 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.2   3.1e-09   1.1e-05      18      94 ..      24     104 ..      12     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.1e-09
  Glyco_trans_4_2  18 keLakrgyeVhvitp..kkga.kdeleaegihvhrlkvdrkgpleylkafklkklikkikPDvvhahyakpy.gllgslaa 94 
                      + L k+g+e  +i +   +++   +l+++g+  +rl+ + k+   ++  +kl+++i++ +PD++h+h  +p  +l++++ +
       EGE26843.1  24 HTLIKAGHESIIIGSapSDSKlVVRLVRDGAIYYRLPMPKKSWWALIHTLKLRQIIEQHQPDIIHIHSRTPAwVLYWAMHS 104
                      66888888888877633444466788999999***************************************9778887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2789.10
//
Query:       EGE26844.1  [L=576]
Description: putative cysteine ABC transporter CydDC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-22   78.1   0.0    1.9e-21   77.0   0.0    1.6  1  ABC_tran         ABC transporter
    2.8e-06   27.3   0.0      0.024   14.4   0.0    2.5  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    9.6e-05   22.1   0.4    0.00045   19.9   0.0    2.4  2  AAA_29           P-loop containing region of AAA domain
    0.00012   22.0   0.0    0.00022   21.2   0.0    1.4  1  RsgA_GTPase      RsgA GTPase
    0.00025   21.3   0.1     0.0012   19.1   0.1    2.2  1  AAA_22           AAA domain
    0.00082   19.8   0.0     0.0018   18.7   0.0    1.6  1  AAA_16           AAA ATPase domain
    0.00085   19.0   3.7    0.00085   19.0   3.7    2.6  3  ABC_membrane     ABC transporter transmembrane region
    0.00094   18.7   0.0     0.0049   16.4   0.0    1.9  2  AAA_7            P-loop containing dynein motor region
     0.0027   17.8   0.0     0.0067   16.6   0.0    1.8  1  AAA_33           AAA domain
      0.004   17.1   0.0      0.008   16.1   0.0    1.5  1  Rad17            Rad17 P-loop domain
     0.0069   16.1   0.0      0.012   15.4   0.0    1.4  1  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.029   13.4   0.0      0.052   12.6   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.033   14.7   0.0       0.13   12.8   0.0    2.1  2  AAA_18           AAA domain
      0.036   14.0   0.0      0.089   12.7   0.0    1.7  1  NACHT            NACHT domain
      0.041   13.9   0.0       0.14   12.2   0.0    1.8  2  AAA_14           AAA domain
      0.047   13.8   0.0        0.1   12.7   0.0    1.6  1  MMR_HSR1         50S ribosome-binding GTPase
      0.092   12.4   0.0       0.15   11.8   0.0    1.3  1  Guanylate_kin    Guanylate kinase
      0.092   13.0   0.1        0.2   11.9   0.1    1.4  1  AAA_28           AAA domain
      0.093   13.1   0.0       0.18   12.2   0.0    1.5  1  RNA_helicase     RNA helicase
      0.094   12.4   0.0       0.21   11.3   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
      0.098   11.9   0.0       0.16   11.2   0.0    1.3  1  Zeta_toxin       Zeta toxin
       0.12   12.9   0.0       0.21   12.1   0.0    1.4  1  AAA_23           AAA domain
       0.13   11.9   0.0       0.21   11.3   0.0    1.3  1  AAA_24           AAA domain
       0.14   11.9   0.0       0.56    9.9   0.0    1.8  2  Cytidylate_kin   Cytidylate kinase
       0.16   11.3   0.0         16    4.8   0.0    2.2  2  SMC_N            RecF/RecN/SMC N terminal domain
       0.17   11.1   0.0       0.32   10.2   0.0    1.4  1  Septin           Septin
       0.24   11.3   0.0       0.38   10.6   0.0    1.3  1  ATPase_2         ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   2.9e-24   1.9e-21       7     137 .]     381     525 ..     377     525 .. 0.88

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 2.9e-24
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHSTTGG. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxx. RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsklglke. 96 
                 k++ ++   i+G++GaGKStLl +la++++ t+Gei+l  +  k+  +   +++++g+l q+  +f+++ +++n       + d+e+ +al+k++l   
  EGE26844.1 381 KIRSDKPCLIIGPSGAGKSTLLHTLAQEHDLTSGEIWLCTDTKKYpWQSVDFDQSLGFLGQTVDIFDQT-LADNlrlgkpnATDDELITALKKVNLLTw 478
                 667777889***************************7775555557889999***********9*9999.88999***99999999999****999996 PP

                 ......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 ......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                         +t++++ +  +SgGq +r+alar+ll+ + +++lDEp+a
  EGE26844.1 479 lnnqpkGLATRLGEYGMAVSGGQARRIALARLLLSPKAVMMLDEPFA 525
                 6666665666677777*****************************85 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00062      0.41       3      20 ..     389     406 ..     389     446 .. 0.88
   2 !   14.4   0.0   3.7e-05     0.024     238     298 ..     498     557 ..     455     558 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00062
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 ++iGp g+GKS+LL +l 
  EGE26844.1 389 LIIGPSGAGKSTLLHTLA 406
                 59************9884 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.7e-05
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsrngaQv.iltTHS 298
                 S G+ r +al+ +ll+     ++  +DEp +gL+P   + ++  l+++ +++++ + ++ TH+
  EGE26844.1 498 SGGQARRIALARLLLSPK---AVMMLDEPFAGLDPDTRHNVWlSLIDAQKSGDIGLlLICTHQ 557
                 677777767777777755...*********************677766666899998999996 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         6     4e+03      50      60 ..     340     353 ..     332     354 .. 0.67
   2 !   19.9   0.0   6.8e-07   0.00045      15      39 ..     378     402 ..     373     407 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6
      AAA_29  50 k...kvrfNkaane 60 
                 +   k++fN+  n+
  EGE26844.1 340 NaapKINFNQITNQ 353
                 44458999998775 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 6.8e-07
      AAA_29  15 htieidlkgatlltGpsGsGKSTll 39 
                 h ++i+ +  +l++GpsG+GKSTll
  EGE26844.1 378 HHAKIRSDKPCLIIGPSGAGKSTLL 402
                 6777876669**************9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.3e-07   0.00022      98     130 ..     384     416 ..     331     423 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.3e-07
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgev 130
                  +dk ++++G+SG+GKStL+ +l++e++l  ge+
   EGE26844.1 384 SDKPCLIIGPSGAGKSTLLHTLAQEHDLTSGEI 416
                  458899********************9999987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.9e-06    0.0012       4      34 ..     384     414 ..     380     562 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.9e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeak 34 
                 +++ ++++G+sG+GK+tll +l++++d  + 
  EGE26844.1 384 SDKPCLIIGPSGAGKSTLLHTLAQEHDLTSG 414
                 567789*******************986544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.7e-06    0.0018      23      51 ..     384     412 ..     371     524 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.7e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd 51 
                 +   +l++G+sG GKs+l+ +l+++   +
  EGE26844.1 384 SDKPCLIIGPSGAGKSTLLHTLAQEHDLT 412
                 336799*************9999854433 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   5.8       7.3   4.8e+03     119     152 ..      21      54 ..       8      67 .. 0.67
   2 !   19.0   3.7   1.3e-06   0.00085      43     163 ..      66     188 ..      50     268 .. 0.87
   3 ?   -1.8   0.1       2.8   1.9e+03      39      63 ..     291     315 ..     253     325 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.3
                   HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
  ABC_membrane 119 lglffqslltfvgglivmfylgwkltlvllailp 152
                   ++ ++  l+t+ ++l++++++gw +t+  +a l+
    EGE26844.1  21 ILAWLLGLVTVWSVLGLSMVSGWFVTMSAVAGLV 54 
                   4456666777777777777777777776666555 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.3e-06
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS..THHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  43 ysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrq..pmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmf 137
                    + ++  +++a++++ ++  ++ +++   l k+lr ++f    ++  + +  +++s+++ + rl +d++ l++++ + ++ +++++  ++ + +v +
    EGE26844.1  66 PAAIIRTFAIARTLSRYGDLMVSHHAVFGLLKDLRVRFFADWASLdfNARNLQRQSSSQKMHRLVKDIDVLDEFVLRLISPWIMAIGAVILVAGVTL 162
                   566777899******************************977666115556666******************************************* PP

                   HHSHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 138 ylgwkltlvllailpliilvsaviak 163
                   +l +k  + l++i + i++ ++v+ +
    EGE26844.1 163 LLLPKAWFGLVPIGLAILIAAFVVYR 188
                   **999877777777777777777665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.8
                   HHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  39 alnvysllllllglaqfilallqsy 63 
                    +   +++l++++ ++++ +++q+ 
    EGE26844.1 291 PMMSSAVALAVFLGLMGLGEFIQNL 315
                   3444556666666666666666665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.1     7e+02      43      77 ..     321     355 ..     312     363 .. 0.84
   2 !   16.4   0.0   7.4e-06    0.0049      10      58 ..     362     410 ..     356     424 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.1
       AAA_7  43 GtGKtviikdllkkldkekylsltinfsaqtsanq 77 
                   G++ ++k+ l+++   +    +inf++ t+ ++
  EGE26844.1 321 ALGRSQVAKQRLNEMLVGQNAAPKINFNQITNQQD 355
                 679999999988888889999999***99998776 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 7.4e-06
       AAA_7  10 seilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkld 58 
                 ++ +V   + +   ++ +  ++++kp+l++Gp+G GK++++++l ++ d
  EGE26844.1 362 NNAIVRAPNAIISAHIHHAKIRSDKPCLIIGPSGAGKSTLLHTLAQEHD 410
                 67788888888899999999*********************99988766 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     1e-05    0.0067       3      32 ..     389     422 ..     388     539 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1e-05
      AAA_33   3 llvGlpGsGKstlaerllkklg....avllssdt 32 
                 l++G++G+GKstl++ l+++++     + l +dt
  EGE26844.1 389 LIIGPSGAGKSTLLHTLAQEHDltsgEIWLCTDT 422
                 689****************998666433355555 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05     0.008      47      92 ..     387     432 ..     370     453 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
       Rad17  47 iLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdnqksdf 92 
                   Li GPsG gkst ++ L++e+     e    +  k+ + q  df
  EGE26844.1 387 PCLIIGPSGAGKSTLLHTLAQEHDLTSGEIWLCTDTKKYPWQSVDF 432
                 56999******************99888766667767777777776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.7e-05     0.012      15      79 ..     382     449 ..     374     511 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgk...aAkvLaeelgieastiakllkr 79 
                   +d+ +++ Gp G+GK+t+l +l++ ++   g++ +++ t+k   ++ +  ++lg+ ++t++ + ++
  EGE26844.1 382 IRSDKPCLIIGPSGAGKSTLLHTLAQEHDLTSGEIWLCTDTKKypwQSVDFDQSLGFLGQTVDIFDQT 449
                 45566799****************99999998999999999982222444556777777776666555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.8e-05     0.052     121     170 ..     377     426 ..     318     435 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.8e-05
       T2SSE 121 vlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiq 170
                 + ++ +r+ +  l+ G+ g GK+tll +l +e + ++ +i +  D+  + 
  EGE26844.1 377 IHHAKIRSDKPCLIIGPSGAGKSTLLHTLAQEHDLTSGEIWLCTDTKKYP 426
                 334568889999********************999999999999987765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       8.1   5.4e+03      69      92 ..     138     170 ..      95     201 .. 0.57
   2 ?   12.8   0.0    0.0002      0.13       2      26 ..     389     415 ..     388     482 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 8.1
      AAA_18  69 s.........aleegknlvidghlaeleseaak 92 
                 +          ++ g ++++ g+   l++ a++
  EGE26844.1 138 EfvlrlispwIMAIGAVILVAGVTLLLLPKAWF 170
                 133333334446666777777777766666665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.0002
      AAA_18   2 lltGtpGvGKttlakeLskrlgf..gv 26 
                 l+ G++G+GK+tl + L++++ +  g+
  EGE26844.1 389 LIIGPSGAGKSTLLHTLAQEHDLtsGE 415
                 699**************9997433432 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013     0.089       2      23 ..     387     408 ..     386     414 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
                 CEEEEC-TTTCHHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklala 23 
                 ++++ G++G GK+tLl+ la++
  EGE26844.1 387 PCLIIGPSGAGKSTLLHTLAQE 408
                 689****************986 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       5.1   3.4e+03      14      48 ..     323     357 ..     321     371 .. 0.75
   2 ?   12.2   0.0   0.00021      0.14       2      27 ..     385     410 ..     384     445 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5.1
      AAA_14  14 GKTtllkqlikellvkkesilyinldderdkklad 48 
                 G + ++kq ++e lv ++    in+++ ++++ a 
  EGE26844.1 323 GRSQVAKQRLNEMLVGQNAAPKINFNQITNQQDAL 357
                 77778888888888999999999999988876654 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00021
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell 27 
                 +k+++i G+  +GK+tll++l++e+ 
  EGE26844.1 385 DKPCLIIGPSGAGKSTLLHTLAQEHD 410
                 58899*****************9997 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00015       0.1       3      26 ..     389     412 ..     387     445 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00015
                 EEEESTTSSHHHHHHHHHTSTEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaiv 26 
                 +i+G + +GKStL+ +l +e+  +
  EGE26844.1 389 LIIGPSGAGKSTLLHTLAQEHDLT 412
                 79***************9985443 PP

>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00022      0.15       2      31 ..     385     414 ..     384     430 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
                    SSEEEEESTTTSSHHHHHHHHHHHSTTTEE CS
  Guanylate_kin   2 rrpvvlvgpsgaGksslkkaLlselpekfg 31 
                     +p  ++gpsgaGks+l ++L +e+  + g
     EGE26844.1 385 DKPCLIIGPSGAGKSTLLHTLAQEHDLTSG 414
                    5899******************99987765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00029       0.2       3      22 ..     389     408 ..     388     420 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00029
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                  i+G++++GK+tll  La++
  EGE26844.1 389 LIIGPSGAGKSTLLHTLAQE 408
                 69****************74 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00026      0.18       2      26 ..     389     413 ..     388     473 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00026
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   ++ Gpsg GKStl ++La++   ++
    EGE26844.1 389 LIIGPSGAGKSTLLHTLAQEHDLTS 413
                   689*************999866333 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00032      0.21      34      70 ..     372     408 ..     360     416 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
   IstB_IS21  34 kvkeLatlsfiekkenivllGpsGvGKshlaialgve 70 
                 ++++ +  + i++ + ++++GpsG+GKs l  +l++e
  EGE26844.1 372 IISAHIHHAKIRSDKPCLIIGPSGAGKSTLLHTLAQE 408
                 5555666677899999**************9999986 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00025      0.16      12      52 ..     383     421 ..     374     425 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00025
  Zeta_toxin  12 sqerPklillgGqpGAGKselaellkdelerqgnvvrldpD 52 
                 ++++P li   G +GAGKs+l++ l++e++ +++ + l +D
  EGE26844.1 383 RSDKPCLI--IGPSGAGKSTLLHTLAQEHDLTSGEIWLCTD 421
                 45566555..59*****************966666655555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00032      0.21      23      37 ..     389     403 ..     375     407 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00032
      AAA_23  23 lItGpNGaGKTTild 37 
                 lI+Gp GaGK+T+l 
  EGE26844.1 389 LIIGPSGAGKSTLLH 403
                 9************96 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00031      0.21       5      23 ..     388     407 ..     384     445 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00031
      AAA_24   5 iliyGpsgiGKTtlakel.g 23 
                 +li+Gpsg+GK+tl+ +l +
  EGE26844.1 388 CLIIGPSGAGKSTLLHTLaQ 407
                 79*************99961 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.3   1.5e+03      13      91 ..      49     132 ..      47     145 .. 0.67
   2 ?    9.9   0.0   0.00085      0.56       4      24 ..     391     411 ..     389     417 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.3
                     HHHHHHHH.HHT-EEEEHHHHHHHHHHHH.HHTT--.TT-HHHHHHHHHT--EEEEEE..EEEETTEE-TTGGGSHHHHHHHHH CS
  Cytidylate_kin  13 svaralae.klglkyldtgalYRalalaa.lrrkvd.lldeaalvelakevelsfeae..kvllngedveeelrsdevekavSa 91 
                     +va ++a  +  ++y+  +a+ R++a a  l r  d +++ +a++ l+k+++++f a+  ++ +n ++++++ +s++++++v  
      EGE26844.1  49 AVAGLVAVgTHTFNYMMPAAIIRTFAIARtLSRYGDlMVSHHAVFGLLKDLRVRFFADwaSLDFNARNLQRQSSSQKMHRLVKD 132
                     556666651345788888888888888762444444145677888888888888877766666777788887777777776655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00085
                     E-STTSSHHHHHHHHHHHHT- CS
  Cytidylate_kin   4 DGPagsGKssvaralaeklgl 24 
                      GP+g+GKs++ ++la++ +l
      EGE26844.1 391 IGPSGAGKSTLLHTLAQEHDL 411
                     5***************98765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.025        16      27      44 ..     388     405 ..     374     416 .. 0.86
   2 ?    4.3   0.0     0.034        23     136     186 ..     496     542 ..     423     572 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.025
                 EEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAi 44 
                   i+Gp G+GKs ll  +
  EGE26844.1 388 CLIIGPSGAGKSTLLHTL 405
                 579*********998765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.034
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkek 186
                 + SgG+   +ala l      +p+++++lDe  a LD   +++v   l  +
  EGE26844.1 496 AVSGGQARRIALARL----LLSPKAVMMLDEPFAGLDPDTRHNVWLSLIDA 542
                 689999888887755....589***************99999886444333 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00048      0.32       8      33 ..     389     414 ..     385     444 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00048
                 EEEEBTTSSCCCCCCTTSSSS----- CS
      Septin   8 mvvGesglGkttlintlfetdlieee 33 
                 +++G sg Gk+tl+ tl ++++ ++ 
  EGE26844.1 389 LIIGPSGAGKSTLLHTLAQEHDLTSG 414
                 89****************99887764 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00058      0.38      18      49 ..     383     414 ..     375     471 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00058
    ATPase_2  18 epneiyfiYGpegsGKtaLlkeiienledkdk 49 
                  ++++ +i Gp g GK++Ll  ++++++  + 
  EGE26844.1 383 RSDKPCLIIGPSGAGKSTLLHTLAQEHDLTSG 414
                 568999*****************999965544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 3792.77
//
Query:       EGE26845.1  [L=590]
Description: putative cysteine ABC transporter CydDC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-22   78.6   0.0    9.9e-22   77.9   0.0    1.3  1  ABC_tran      ABC transporter
    4.1e-19   69.3   9.3    7.4e-19   68.4   9.3    1.4  1  ABC_membrane  ABC transporter transmembrane region
    0.00015   21.7   0.8      0.071   12.9   0.1    2.3  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0018   18.2   0.0     0.0037   17.2   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
     0.0022   17.7   0.8     0.0054   16.4   0.8    1.6  1  AAA_29        P-loop containing region of AAA domain
     0.0043   17.4   0.1     0.0096   16.3   0.1    1.6  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.014   14.9   0.0       0.12   11.8   0.0    1.7  1  SMC_N         RecF/RecN/SMC N terminal domain
      0.035   14.4   1.3       0.29   11.4   0.1    2.5  3  AAA_22        AAA domain
       0.12   11.6   0.0       0.19   10.8   0.0    1.3  1  DUF815        Protein of unknown function (DUF815)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0     5e-25   9.9e-22       4     136 ..     389     537 ..     386     538 .. 0.90

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 5e-25
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsk 91 
                  +l++ +g+ + + Ge+G+GKStLl++l+g  +   G +++ +++ ++     ++  lr+++g+l q p l p + +r+n       + d+e+ ++l+ 
  EGE26845.1 389 TTLHFVAGKSTLLKGESGTGKSTLLQILLGFGQ-YTGVVEVYDDQGHYrydtLDMAYLRHQFGYLAQMPALLPIS-IRDNltlaksdATDDELIDVLDA 485
                 678999*************************98.57888776555555577778899****************99.********99999999******* PP

                 STTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +gl           dt +++++  LSgGq  r+a+a++ll+++k++llDEpt
  EGE26845.1 486 VGLWSlirdlpeQMDTMLGERGGGLSGGQAHRLAIAQLLLQDAKVWLLDEPT 537
                 ***9999999999999999999*****************************9 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   9.3   3.7e-22   7.4e-19       9     271 ..      46     314 ..      38     317 .. 0.84

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 3.7e-22
                   HHHHHHHHHHHHHHHHHHHH.HHSS...TCCHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCH CS
  ABC_membrane   9 ilagvlsplfplvlgrildt.lldk...gdpet....ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsv 97 
                   +++ +l ++++++l  i+d  ll++    ++++    eal+vy ++l++++l+++++++++  ll+ +g ++ +++r++l+ k+  +  +     s 
    EGE26845.1  46 VISLLLFMVQAWILVMIFDGwLLPFipeLSQHQvmaiEALAVYVMALFGVMLLRALIGYAKDALLTRIGVQAASDVRQRLLVKLGDMGPARRFFGSD 142
                   44444444444444444443122212213333356679***********************************************996555555789 PP

                   HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  ABC_membrane  98 GellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVk 194
                   G l s++ ++ + l     +  ++  ++++t + + + + +l+   +++lla++pl+ +++a+i+  + + ++++++a+a+++  + + ++g+ t+ 
    EGE26845.1 143 GALASKIIDEPEHLIGYARFE-IQKKTAVSTPILLAVCISFLNKTAAMILLATAPLVPIFMAMIGVATARKSREQMDAMAQLGGRFFDWIRGVNTLS 238
                   ************999766555.577778888888888888888889*************************************************** PP

                   HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHTTSSTHHHHHHHHHHHHHHH CS
  ABC_membrane 195 afgreeyflekfekaleeakkagikkaianglligitqllgllsyalal.wfGttlvisgelsvgdlvvflslfailf 271
                    +g  ++ ++ ++ ++++++k+++ +++++ l+++++++l+ ls+al++ ++G+ l+  g l  ++ vv++++++ l+
    EGE26845.1 239 RLGVVDIAVKDIDVSSDNYRKKTMAVLRIAFLNSAVLEFLSALSIALVAvYLGFGLI--GILPWQSGVVITTYSSALM 314
                   ***********************************************9988999999..7777777779999988665 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   3.5e-05     0.071       2      26 ..     399     425 ..     398     466 .. 0.79
   2 !    7.0   0.1    0.0023       4.5     237     300 ..     510     569 ..     505     573 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
      AAA_21   2 nvliGpNgsGKSnLLdaldllarl..d 26 
                 ++l G  g+GKS+LL++l ++ ++   
  EGE26845.1 399 TLLKGESGTGKSTLLQILLGFGQYtgV 425
                 8999**************988776551 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0023
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHP...kllrrllellkelsrngaQviltTHSpl 300
                 lS G+ + la++ +ll+++   ++ l+DEp  +L+     +++ ll+ l+ ++     vi  TH+ +
  EGE26845.1 510 LSGGQAHRLAIAQLLLQDA---KVWLLDEPTEHLDSetaFMIKDLLKRLSVHR----TVIWITHDQS 569
                 5666666667777888777...9*************66666677777666664....4999999865 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.9e-06    0.0037      96     137 ..     393     433 ..     381     459 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.9e-06
                  HCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------- CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpelelktgevseklgrG 137
                   +++k ++l G+SG GKStL+  ll+   + tg v   +++G
   EGE26845.1 393 FVAGKSTLLKGESGTGKSTLLQILLGF-GQYTGVVEVYDDQG 433
                  578899******************994.44555554444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.8   2.7e-06    0.0054      18      39 ..     392     413 ..     386     418 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.7e-06
      AAA_29  18 eidlkg.atlltGpsGsGKSTll 39 
                 ++  +g +tll G+sG+GKSTll
  EGE26845.1 392 HFV-AGkSTLLKGESGTGKSTLL 413
                 554.4559**************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   4.8e-06    0.0096      25     119 ..     397     518 ..     388     569 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.8e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde...........aesaeleawrekleeala...... 106
                  ++ll GesG+GKs+l++ ll  + + +  +++   dq     +y+  ++++  ++ +  l+++           ++ a+                   
  EGE26845.1 397 KSTLLKGESGTGKSTLLQILLG-FGQ-YTGVVEVYDDQG--HYRYD-TLDMAYLRHQFGYLAQMpallpisirdnLTLAKS-----------Datddel 479
                 689**************99995.333.344444444444..12333.4444445577777777744444443333222222...........0222222 PP

      AAA_16 107 ..........................avpelagaeasrl 119
                                            ++ l+g +a+rl
  EGE26845.1 480 idvldavglwslirdlpeqmdtmlgeRGGGLSGGQAHRL 518
                 233335666666665555555555454444444444444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.1e-05      0.12     136     201 ..     509     570 ..     385     581 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.1e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreem 201
                  LSgG+   +a+a l      + a ++llDe   +LD +    + +llk+ s +  +i i++++ +
  EGE26845.1 509 GLSGGQAHRLAIAQL----LLQDAKVWLLDEPTEHLDSETAFMIKDLLKRLSVHRTVIWITHDQSV 570
                 699999776666655....5788999************************************9865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       7.1   1.4e+04      96     105 ..     149     161 ..     148     192 .. 0.71
   2 ?   11.4   0.1   0.00015      0.29       6      26 ..     397     417 ..     394     432 .. 0.88
   3 ?    0.8   0.1      0.27   5.4e+02      76     117 ..     514     556 ..     490     571 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7.1
      AAA_22  96 iiDEaqhlr...s 105
                 iiDE +hl+   +
  EGE26845.1 149 IIDEPEHLIgyaR 161
                 7999999864432 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00015
      AAA_22   6 gilvvtGesGtGKTtllrrll 26 
                 +++++ GesGtGK+tll+ ll
  EGE26845.1 397 KSTLLKGESGTGKSTLLQILL 417
                 68899***********99775 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.27
      AAA_22  76 eellealeqalraravielliiDE.aqhlr..seealeeLrslln 117
                 ++ + a++q l + a+  + ++DE  +hl+  ++ ++++L ++l 
  EGE26845.1 514 QAHRLAIAQLLLQDAK--VWLLDEpTEHLDseTAFMIKDLLKRLS 556
                 4444567777777777..9*****557798655899998866655 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.7e-05      0.19      37      74 ..     383     417 ..     356     434 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.7e-05
      DUF815  37 kealventeqfleglpannvLLwGarGtGKSslvkall 74 
                 + +l+  t +f++g++    LL G+ GtGKS+l++ ll
  EGE26845.1 383 RVRLTPTTLHFVAGKS---TLLKGESGTGKSTLLQILL 417
                 5677888899998875...7*************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4005.30
//
Query:       EGE26846.1  [L=462]
Description: fumarate hydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     4e-116  387.8   0.0   6.2e-116  387.2   0.0    1.3  1  Lyase_1      Lyase
    1.7e-23   82.7   0.2    1.7e-23   82.7   0.2    2.5  3  FumaraseC_C  Fumarase C C-terminus


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.2   0.0  6.9e-120  6.2e-116       1     312 []      11     341 ..      11     341 .. 0.97

  Alignments for each domain:
  == domain 1  score: 387.2 bits;  conditional E-value: 6.9e-120
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHC.....HHHHHHHHHHHTTSST....HHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHH CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedik.....alaalkkaaakanvdl....keeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnev 90 
                 g++ v+ad+++g++tersr+nfr+++e+       a+a +kkaaa+ n+ l     e+ + i++a+de+l+ gkl+dqf+l+v+q+gsgt++nmn+nev
  EGE26846.1  11 GEIAVPADAYWGAQTERSRQNFRIGGERLPeplihAMATVKKAAAMTNATLgritDEQSQLIVQACDEILA-GKLNDQFPLVVWQTGSGTQSNMNINEV 108
                 7899*********************8887789999**************99999999999***********.*************************** PP

                 HH....HHTT......HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHH CS
     Lyase_1  91 ig....ellg......ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaeal 179
                 i+    e+ g      ++++pnd+v+ +qS+nD +pTa+r+a+++++s+kLlpa+++L+++l +k+  f++++kiGrThlqdAtP+tlgqe+s+y+ +l
  EGE26846.1 109 IAnranEIAGkpkgsyQPIHPNDHVNHAQSTNDSFPTAIRVAAAQEMSNKLLPAINNLRQTLAQKSADFDEIIKIGRTHLQDATPLTLGQEFSGYVMQL 207
                 **98888888***************************************************************************************** PP

                 HHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT.TSS CS
     Lyase_1 180 erdrerlkellkrllvellgggtavgtglnadpefaelvakelakvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssge.agl 276
                 +  +er++ +l   l++l  ggtavgtgln++p +a +vak la++t+l+  +apn+fea+++rDa v ++galk+la+sL k+a+D+r+l+sg+ +gl
  EGE26846.1 208 DYALERIEAAL-SGLYQLPLGGTAVGTGLNSHPDYAVKVAKVLAELTKLNfITAPNKFEALAARDAEVFASGALKTLAASLNKIANDVRWLASGPrCGL 305
                 ***********.6666666677***************************************************************************** PP

                 EEEEGCCTSSC-TTSTTTEBTHHHHHHHHHHHHHHH CS
     Lyase_1 277 velslaesepGSSiMPgKvNPvqlElltgvagrvvG 312
                 +els++e+epGSSiMPgKvNP+q+E++t+v ++v+G
  EGE26846.1 306 GELSIPENEPGSSIMPGKVNPTQCEAMTMVVTQVFG 341
                 ***********************************9 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.35   3.1e+03      16      46 ..      49      79 ..      45      81 .. 0.64
   2 ?   -2.5   0.0      0.82   7.4e+03       7      12 ..     362     367 ..     361     368 .. 0.86
   3 !   82.7   0.2   1.9e-27   1.7e-23       1      53 [.     407     459 ..     407     460 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.35
                 HHHHHHHHHT--HHHHHHHTT-.-HHHHHHH CS
  FumaraseC_C 16 kIAkeAlkegktlreavlelgllteeeldel 46
                  + k A  ++ tl  ++ e+  l  + +de+
   EGE26846.1 49 TVKKAAAMTNATLGRITDEQSQLIVQACDEI 79
                 4556666678777777777766666666666 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.82
                  HHHHHH CS
  FumaraseC_C   7 phIGYe 12 
                  p+IGY 
   EGE26846.1 362 PVIGYN 367
                  9****5 PP

  == domain 3  score: 82.7 bits;  conditional E-value: 1.9e-27
                  GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHHT-HHHHH CS
  FumaraseC_C   1 LVTaLnphIGYekAakIAkeAlkegktlreavlelgllteeeldelldpekMt 53 
                  LVTaLn+hIGYe+Aak+Ak+A+k++++l++ +++l+llte+e+de+++pe+M+
   EGE26846.1 407 LVTALNRHIGYENAAKVAKTAFKNNQSLKQTAIQLNLLTEAEFDEIVRPEQMV 459
                  8***************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3547.09
//
Query:       EGE26847.1  [L=198]
Description: 5-formyltetrahydrofolate cyclo-ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-26   93.8   0.0    1.4e-26   93.5   0.0    1.0  1  5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family


Domain annotation for each model (and alignments):
>> 5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   7.7e-31   1.4e-26       4     186 ..      15     190 ..      13     191 .. 0.94

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 7.7e-31
                     HHHHHHHHHHTS-HHHHHHHHHHHHHHHHTSHHHHH-.SEEEE----TTS---HHHHHHHHHTTEEEEEEEECSSCTEECEEEEEECCCCCCCCC CS
  5-FTHF_cyc-lig   4 lRkqllaalralseeevaaesealsqrieslkesqea.krvalyvsvkgeidtkelikklleegkevllPrvrlesgslkvvrlttlkeedsles 97 
                     lRk ++  +r+ls+ e++++++ +++ + +l+       ++ +y+    e +t  +++  ++   + +lP +++++  l    + ++ +++ l++
      EGE26847.1  15 LRKHMRMQRRSLSHCERQRSAYLATRFLYKLIPLLPKkANIGFYLDGFCELPTATIAQFCQKLDYQAYLPITTPNK-PLTFAPIIQPLNKTPLKK 108
                     8*****************9999888888887776655489***********************************9.999*************** PP

                     HCTSSCE--TTECCBCGGGG-SEEEE--SEEETTS-EE-SSTTHHHHHHHHHTST-SS--EEEEE--GGGEES-----ST----SEEE- CS
  5-FTHF_cyc-lig  98 gkyglkePeeeeerelalekldlvlvPgvAfdkeGaRlGkGkGyyDrflarlkggagdkpltvglaldeqlverlPleehDvpvdevvt 186
                      + g++eP+++   + +   +d ++ P v +d +G RlG+G+GyyDr++a+ k+      l+++ ++d+q+++rlP +++D++vd+++t
      EGE26847.1 109 HRLGMHEPRSKLILSAN--HMDAIICPLVMVDLDGIRLGMGGGYYDRTFAKAKN-----CLKIAWCYDFQVADRLPKQPWDMSVDIIIT 190
                     ************98776..9**********************************.....*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1685.74
//
Query:       EGE26848.1  [L=235]
Description: hypothetical protein EA1_05172 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1459  (0.0813765); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1779.30
//
Query:       EGE26849.1  [L=100]
Description: hypothetical protein EA1_05177 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 802.35
//
Query:       EGE26850.1  [L=117]
Description: hypothetical protein EA1_05182 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.094   12.4   0.6       0.66    9.7   0.0    2.3  2  NADH_oxidored  MNLL subunit
       0.17   11.3   2.8       0.35   10.3   2.8    1.5  1  SKG6           Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> NADH_oxidored  MNLL subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   7.4e-05      0.66      15      27 ..      23      35 ..      18      37 .. 0.86
   2 ?    0.2   0.2     0.067     6e+02      13      25 ..      62      73 ..      56      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 7.4e-05
                   CHHHHHHHHHHHH CS
  NADH_oxidored 15 vlvPlGFvvGwyL 27
                   ++vP+GF +G+ L
     EGE26850.1 23 SVVPMGFTIGLCL 35
                   79********865 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.067
                   CCCHHHHHHHHHH CS
  NADH_oxidored 13 vhvlvPlGFvvGw 25
                   + v+vP+ Fv+G+
     EGE26850.1 62 AAVVVPV-FVIGI 73
                   5789998.99997 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.8   3.9e-05      0.35      14      27 ..      62      75 ..      62      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.9e-05
        SKG6 14 vaVaVPVaViiivL 27
                +aV+VPV+Vi i L
  EGE26850.1 62 AAVVVPVFVIGIPL 75
                69********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 965.08
//
Query:       EGE26851.1  [L=30]
Description: hypothetical protein EA1_05187 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       175  (0.00976072); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 247.12
//
Query:       EGE26852.1  [L=226]
Description: ribulose-phosphate 3-epimerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-86  286.5   0.2    9.2e-86  286.3   0.2    1.0  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
    9.4e-06   25.5   0.2     0.0076   16.0   0.0    2.9  3  QRPTase_C       Quinolinate phosphoribosyl transferase, C-ter
     0.0047   16.4   0.1      0.026   14.0   0.0    2.0  2  His_biosynth    Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.3   0.2   1.5e-89   9.2e-86       2     198 .]       7     204 ..       6     204 .. 0.99

  Alignments for each domain:
  == domain 1  score: 286.3 bits;  conditional E-value: 1.5e-89
                     EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-B-B-HHHHHHHGGG.E-S-EEEEEESSSHHHCHHHHHHCT-SEEEEE-ST-TTHH CS
  Ribul_P_3_epim   2 iapSllsadfarlgeevkaveeagadllHvDvmDghfvpNltigplvvealrkl.telpldvHLmveevdrivpefaeagasiisvHaEalehlk 95 
                     iapS+lsadfarlg ++++v eagad++H+DvmD+h+vpNlt+g ++++al+++ +++p+dvHLmv++vd ++++f++aga+ii++H+Ea+eh++
      EGE26852.1   7 IAPSILSADFARLGADIESVLEAGADVVHFDVMDNHYVPNLTFGSMICQALKDYgITAPIDVHLMVKPVDGMIEQFLKAGADIITFHPEASEHID 101
                     9*****************************************************989************************************** PP

                     HHHHHHHHTTSEEEEEE-TT--GGGGTTTCCC-SEEEEESS-TT-SS----CCHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT--E CS
  Ribul_P_3_epim  96 rtiqeikeaGakaglvlnpatplealeyllekldlvllmsvePgfgGQkFipevlekikkvrklidekeldlkievDGGvkldnieqiaeagadv 190
                     r +q ik+ Gak glv+npatpl +l+++l+k+d +llmsv+PgfgGQkFi+++l+k+ +vr++id++++d+++evDGGv+++ni+ i eagad+
      EGE26852.1 102 RSLQLIKDGGAKCGLVFNPATPLYYLDHTLDKVDQILLMSVNPGFGGQKFIDATLDKLATVRQMIDDSGRDIRLEVDGGVNVANIRTIGEAGADM 196
                     *********************************************************************************************** PP

                     EEESHHHH CS
  Ribul_P_3_epim 191 lVagsavf 198
                     +Vagsa+f
      EGE26852.1 197 FVAGSAIF 204
                     *******9 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0028        17      92     112 ..      22      42 ..      17      49 .. 0.85
   2 ?    0.6   0.0     0.073   4.4e+02      93     122 ..      79     108 ..      50     116 .. 0.81
   3 !   16.0   0.0   1.3e-06    0.0076     111     158 ..     156     203 ..     131     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0028
                 HHHHHHHHT-SEEEEES--HH CS
   QRPTase_C  92 eleevleaeadiimLDnfsve 112
                 ++e vlea+ad++ +D ++ +
  EGE26852.1  22 DIESVLEAGADVVHFDVMDNH 42 
                 7899************99875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.073
                 HHHHHHHT-SEEEEES--HHHHHHHHHHHH CS
   QRPTase_C  93 leevleaeadiimLDnfsveelkkaveelk 122
                 +e+ l+a+adii +    +e++ + ++++k
  EGE26852.1  79 IEQFLKAGADIITFHPEASEHIDRSLQLIK 108
                 688999******998888888888777765 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHC CS
   QRPTase_C 111 veelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalt 158
                  ++l+++ ++++   +++++ev Ggv+  n++++ + g d++  g+++
  EGE26852.1 156 LDKLATVRQMIDDSGRDIRLEVDGGVNVANIRTIGEAGADMFVAGSAI 203
                 45666666777788889**************************99987 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.15   9.1e+02      87     130 ..      22      68 ..      18      85 .. 0.67
   2 !   14.0   0.0   4.3e-06     0.026      59     111 ..     160     209 ..     151     222 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.15
                   HHHHHHHCT-SEE...EESHHHHH-THHHHHHHHHHCGGGEEEEEEE CS
  His_biosynth  87 dveelleagadkv...iigtaavknpelikelaekfgsqkivvaiDa 130
                   d+e++leagad v   ++   +v n  + + ++++  +  i++ iD+
    EGE26852.1  22 DIESVLEAGADVVhfdVMDNHYVPNLTFGSMICQALKDYGITAPIDV 68 
                   78888999988772223334466666666666666666666666665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4.3e-06
                   HHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THH CS
  His_biosynth  59 eanldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaavknpel 111
                    +  +++    +   i ++v+GG++  + ++++ eagad  + g+a +++p++
    EGE26852.1 160 ATVRQMIDDSGRD--IRLEVDGGVNVAN-IRTIGEAGADMFVAGSAIFNQPNY 209
                   3333444444333..9********9888.*******************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1709.03
//
Query:       EGE26853.1  [L=274]
Description: enoyl-(acyl carrier protein) reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-79  265.4   0.4    4.7e-79  265.2   0.4    1.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
      3e-13   49.7   0.1      4e-13   49.3   0.1    1.1  1  adh_short       short chain dehydrogenase
     0.0041   17.0   0.1     0.0075   16.2   0.1    1.4  1  KR              KR domain
  ------ inclusion threshold ------
      0.071   13.3   0.0         14    6.0   0.0    2.5  2  GP63            Gene product 63
       0.15   12.3   0.0       0.32   11.2   0.0    1.5  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.2   0.4   1.3e-82   4.7e-79       1     234 []      12     257 ..      12     257 .. 0.96

  Alignments for each domain:
  == domain 1  score: 265.2 bits;  conditional E-value: 1.3e-82
                   TTT..TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHH.....SSEEEEEE-----EG..CSS-G CS
  adh_short_C2   1 Gaa..sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekf.....gklDilvnnagiapk..lkgpf 87 
                   G+a   +I++aiA++l++eGa+++lt+ n++ kkrv+ +ae+++a  v+ecDV ++e+++ +++e+++++     +++D++v+++g+ap+  l+g+f
    EGE26853.1  12 GIAskLSIAWAIAESLHREGAQLILTYPNDKIKKRVDMAAEAFDAVaVIECDVGSDESIQVCFDEIAKHWgvgddKGIDGIVHAIGFAPAdqLDGDF 108
                   677778**************************************8857**********************7766669******************** PP

                   GG.H-HHHHHHHHHHHTHHHHHHHHHHHH.HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2  88 le.tsreefdraldvnlyslfllakaalp.lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgi 182
                   ++ t+re+ + a+d++ ys+++laka ++ l++++gs+++l++ g+  v+pnyn++g+aKa+lea++rylA +lg +giRvNa+s+gpi+Tlaasgi
    EGE26853.1 109 TQaTTREGSQIAHDISSYSFVALAKAGRElLAARQGSLLTLTYEGSISVLPNYNVMGMAKASLEASVRYLASSLGGEGIRVNAISAGPIRTLAASGI 205
                   *9569************************666677************************************************************** PP

                   TTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 183 kgfdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   k+f+++l+ +e+ aplgr++++eev++aalfL+s++as+itG++l+vD+G++
    EGE26853.1 206 KSFRRMLDVSEKIAPLGRNVSQEEVGNAALFLLSPWASGITGEILFVDAGFN 257
                   **************************************************96 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1   1.1e-16     4e-13       4     188 ..       9     203 ..       6     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 1.1e-16
                 EEESTTS..HHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.....SSESEEEE---S....S--S CS
   adh_short   4 lvtGass..GIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.....gkldvLvnNAGi....tgsg 91 
                 +vtG +s   I  aia+ l +eGa+++++   ++k+++ ++   e+ + + +i++Dv + e+++  +++++k++     +++d +v+  G     + +g
  EGE26853.1   9 VVTGIASklSIAWAIAESLHREGAQLILTY-PNDKIKKRVDMAAEAFDAVAVIECDVGSDESIQVCFDEIAKHWgvgddKGIDGIVHAIGFapadQLDG 106
                 6787766447899*************9955.558899999999988889*************************9988889**********98776777 PP

                 SGGGCSHHH.HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  92 pfselseee.wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 +f + + +e  +   ++   + + l++a  +++l++++G+  + +   +   ++++ + + +Ka +++ +r la  l  +girvna+  G+++T  a 
  EGE26853.1 107 DFTQATTREgSQIAHDISSYSFVALAKAG-RELLAARQGSLLTLTYEGSISVLPNYNVMGMAKASLEASVRYLASSLGGEGIRVNAISAGPIRTLAAS 203
                 77777777755666788888888888886.55588**********************************************************97665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.1e-06    0.0075       5      97 ..      10     104 ..       7     116 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.1e-06
                 EETTTSHH..HHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.....S---EEEE--------- CS
          KR   5 itGGlGgL..GlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee.....ppikGvihaAgvlrdkl 96 
                 +tG + +L  + ++a+ l ++ga+ ++    +    ++ k++++  ++    v v+++Dv + ++++ +++ei ++      + i G++ha g++  ++
  EGE26853.1  10 VTGIASKLsiAWAIAESLHREGAQLILTY-PN----DKIKKRVDMAAEAFDAVAVIECDVGSDESIQVCFDEIAKHWgvgddKGIDGIVHAIGFAPADQ 103
                 66666554115678899999999755544.33....4566678888888889*********************98644445599*******98876555 PP

                 T CS
          KR  97 l 97 
                 l
  EGE26853.1 104 L 104
                 5 PP

>> GP63  Gene product 63
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0099        36      14      50 ..      32      68 ..      29      81 .. 0.86
   2 ?    6.0   0.0    0.0038        14      49      68 ..     215     234 ..     209     238 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0099
        GP63 14 aaliktkPtvWtqkkvdlesedPrkPelievkvdGse 50
                a li t P    +k+vd+ +e      +ie  v  +e
  EGE26853.1 32 AQLILTYPNDKIKKRVDMAAEAFDAVAVIECDVGSDE 68
                56999****************9999999998876555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0038
        GP63  49 selkyglarnvseesveria 68 
                 se   +l rnvs+e+v ++a
  EGE26853.1 215 SEKIAPLGRNVSQEEVGNAA 234
                 666679**********9887 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     9e-05      0.32      29      98 ..     121     188 ..      96     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9e-05
                     HSTTCEEEE..EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEE CS
  Acetyltransf_1  29 sleaegllv..aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkiv 98 
                     +++ ++ +v  a+ + el++  +++  +      +y  s+ V p+y  +G ++a lea ++++ +  g++ i 
      EGE26853.1 121 HDISSYSFValAKAGRELLAARQGSLLTL-----TYEGSISVLPNYNVMGMAKASLEASVRYLASSlGGEGIR 188
                     44555555545666666888888888888.....999**************************9998887774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2081.62
//
Query:       EGE26854.1  [L=51]
Description: hypothetical protein EA1_05202 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 394.90
//
Query:       EGE26855.1  [L=201]
Description: GTP cyclohydrolase I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-70  235.7   0.0    2.6e-70  235.5   0.0    1.0  1  GTP_cyclohydroI  GTP cyclohydrolase I


Domain annotation for each model (and alignments):
>> GTP_cyclohydroI  GTP cyclohydrolase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.5   0.0   1.4e-74   2.6e-70       2     177 ..      17     192 ..      16     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 235.5 bits;  conditional E-value: 1.4e-74
                      HHHHHHHHHHTT--TTSTTTTTHHHHHHHHHHHHTGGGGS-G.GGGGSSEEETT--S-EEEEEEEEEEEETTT--EEEEEEEEEEE-TTEEE-H CS
  GTP_cyclohydroI   2 eeavreiLealgedpereglketpkRvakayeelfkgleedpkekvlkkvfeeekdemvlvkdiefsSlCeHHllpfigkahvaYiPkkkviGl 95 
                      +++++ei+++ ged +r+gl +tp R aka+  l++g+++d ++ + ++vf++++ e+vlv++ief+SlCeHHllpf+g+ahv+Y+P++kv+Gl
       EGE26855.1  17 SKHYAEIISSAGEDLTRDGLIDTPMRAAKAFGYLTRGYHQDLATVANNAVFDSDNPELVLVQNIEFYSLCEHHLLPFYGVAHVGYLPDGKVLGL 110
                      57899*************************************888889********************************************** PP

                      HHHHHHHHHHHSSEE-HHHHHHHHHHHHHHHH--SEEEEEEEEEEHHHHSSTT--TT-EEEEEEEEEHHHH-HHHHHHHHHH CS
  GTP_cyclohydroI  96 SklaRivdvvarrlqvQErlteqiadaleevlkpkgvavvieaehlCmtmrgvkkkesktvtsalrGefkedaalreeflel 177
                      Sk+aRi+d++arrlq+QE+lt+q+a+a+ee ++++gvav+++a h+Cm+mrgv k++s+t t+++ Gef++++++r+efl+ 
       EGE26855.1 111 SKVARIIDMYARRLQIQENLTKQVASAIEELTGCRGVAVIMDACHMCMMMRGVGKQQSTTRTTSMLGEFTTNHDARREFLDA 192
                      *******************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1480.10
//
Query:       EGE26856.1  [L=542]
Description: phospholipase D/transphosphatidylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-36  124.6   0.8    4.6e-21   75.1   0.1    2.3  2  PLDc_2       PLD-like domain
    3.7e-06   26.9   0.2        0.1   12.8   0.0    2.6  2  PLDc         Phospholipase D Active site motif
  ------ inclusion threshold ------
      0.062   12.8   0.0        1.2    8.6   0.0    2.5  3  PP_kinase_C  Polyphosphate kinase C-terminal domain 2
        0.1   12.6   0.1       0.26   11.3   0.1    1.6  1  AlphaC_N     Alpha C protein N terminal


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.1   2.8e-16   1.3e-12       8     130 ..      96     237 ..      91     240 .. 0.70
   2 !   75.1   0.1     1e-24   4.6e-21       3     128 ..     338     481 ..     336     485 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 2.8e-16
      PLDc_2   8 Akksidiatyyfvsdre...ildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfe..t.........ll......gslHaKl 86 
                 A++sidi++y+ ++d++   +l++l +aa+rgv vr+lld+    +++ + +  + l ++  ++++ vr+++  +         +l      +++H+K 
  EGE26856.1  96 ANQSIDIQYYIWHNDEAgqlMLKDLWEAADRGVIVRLLLDD----FNSSP-ELDQLLLRISKHKNIAVRLINpmPyrgfrslnyMLhpirtnRRMHNKS 189
                 899*********666553336*******************8....33333.34555555557788888888855144555555411556677******* PP

      PLDc_2  87 ylidgktvivGSsNltkrgl.....dlnlElnvviedkelakeleeeFe 130
                 +++d+k+ ++G+ N+ +++l     ++  +l v++ ++ ++ ++++ Fe
  EGE26856.1 190 MTFDNKISVIGGRNIGNEYLnnapvNHFADLDVMLVGH-VVGKITQSFE 237
                 ******************99444443334444444444.4566666665 PP

  == domain 2  score: 75.1 bits;  conditional E-value: 1e-24
      PLDc_2   3 qliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfe...t........ll.......gslH 83 
                 +++ + +k++ i++ yfv+++e +d l+ +ak gv+vril++s  +++ +  +a  ++++++ll+agv + +++   +        ++       +slH
  EGE26856.1 338 TQLGQPSKKLSIISSYFVPTKEGVDTLITLAKMGVEVRILTNSFDATDVGIVHAGYAHWRKQLLAAGVHLFEIKssaQsiqdnenrFWrtrqhstTSLH 436
                 5788999************************************8889999999****************88777654155555444116677889**** PP

      PLDc_2  84 aKlylidgktvivGSsNltkrgldlnlElnvviedkelakeleee 128
                 aK++ +d++  ++GS+N ++r+ + n+El+v i+d++la +l++ 
  EGE26856.1 437 AKAFAVDDDQIFIGSYNVDPRSANINTELGVLIKDSKLAGQLHKA 481
                 ****************************************99886 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   5.8e-05      0.26       3      28 .]     183     208 ..     181     208 .. 0.88
   2 !   12.8   0.0   2.3e-05       0.1       4      28 .]     434     458 ..     433     458 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.8e-05
                 BEE---EEEETTTEEEEE---SSHHH CS
        PLDc   3 gthHqKivivDdrvafvGgaNLcdgr 28 
                  ++H K + +D++++++Gg N+ +++
  EGE26856.1 183 RRMHNKSMTFDNKISVIGGRNIGNEY 208
                 689****************9987765 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.3e-05
                 EE---EEEETTTEEEEE---SSHHH CS
        PLDc   4 thHqKivivDdrvafvGgaNLcdgr 28 
                 ++H+K + vDd+  f+G+ N + ++
  EGE26856.1 434 SLHAKAFAVDDDQIFIGSYNVDPRS 458
                 69******************99986 PP

>> PP_kinase_C  Polyphosphate kinase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.062   2.8e+02      39      61 ..     112     134 ..      93     145 .. 0.84
   2 ?   -3.2   0.0       1.1   5.1e+03      44      60 ..     361     377 ..     357     387 .. 0.77
   3 ?    8.6   0.0   0.00026       1.2     100     156 ..     443     499 ..     436     514 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.062
  PP_kinase_C  39 edkeiidkLyeAsqaGVkikliv 61 
                  + + +++ L eA++ GV ++l+ 
   EGE26856.1 112 AGQLMLKDLWEAADRGVIVRLLL 134
                  5567999************9986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
  PP_kinase_C  44 idkLyeAsqaGVkikli 60 
                  +d L+  +++GV+++++
   EGE26856.1 361 VDTLITLAKMGVEVRIL 377
                  67788888888888876 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00026
  PP_kinase_C 100 geeevyisSaDlmtRnldrRvevlvpvedeklkkelkeilelqlkDnvkareldedg 156
                  ++++++i+S  + +R+ +   e+ v ++d+kl+ +l++ l+   + + +a+el+ d 
   EGE26856.1 443 DDDQIFIGSYNVDPRSANINTELGVLIKDSKLAGQLHKALSNSQAITHQAYELKLDA 499
                  6799************************************99988888888876554 PP

>> AlphaC_N  Alpha C protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   5.8e-05      0.26      13      83 ..      38     110 ..      34     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.8e-05
    AlphaC_N  13 amtknvqngrayidlydvklgkidplqliklespdlkaiyvirqgskvyaqaseltivgaak..inyrvlksd 83 
                 a+tk+vq+ +  +       g i  ++    + p+    y i+ g++ +a  s lt v   +  i+y + + d
  EGE26856.1  38 ALTKQVQERHQMVKHGGSSDGLISAINAQSHHHPNQSGYYPITTGANAFAARSTLTDVANQSidIQYYIWHND 110
                 789999999999999999999999999999999***********************99876611567777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3921.34
//
Query:       EGE26857.1  [L=58]
Description: hypothetical protein EA1_05217 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 429.17
//
Query:       EGE26858.1  [L=509]
Description: major facilitator superfamily protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-21   75.1  36.8    4.9e-21   75.1  36.8    1.9  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1  36.8   2.7e-25   4.9e-21       3     352 ..      20     464 ..      12     465 .. 0.75
   2 ?   -1.8   1.0     0.064   1.1e+03     211     231 ..     481     501 ..     465     507 .. 0.62

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 2.7e-25
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigl.....lltlyalga...avaslplGrlsdrfGrrrvlllglllfalg.lllllfa..ss....lw 86 
                 l+a +++++++i++ +   +l + + + ++e+ +     l++l+++g+    ++ l +G+ +d  Grr+ l+++ll+  ++ l+++l++  s+     +
  EGE26858.1  20 LIASVAFFDFAIFIYLSD-LLRQIF-FGGTEYTWlsrlqLFGLFSAGYiarPLGGLMIGYYGDTKGRRPALFISLLGITIFtLFIGLLPqySQigfiAP 116
                 444455555555444444.444443.479999999999966667776655589****************888888888888355555534433334334 PP

       MFS_1  87 .lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg........Wravfyilaivsllafvlfllll.... 172
                  +++v+rv+q+l+ g+++p++ +++++  p ++ g + g + +g  l+ i+  ll  +l + l         Wr +f+  +++s++++++   +     
  EGE26858.1 117 iIFIVARVIQSLAIGGIMPSVWVYVTEHLPTRHIGVGCGAILSGCVLSLIFLILLMNWLDDTLTwaqmmsfgWRIPFICGGLLSVILILI--SYKhlqe 213
                 45*******************************************************999666669999999***************997..4444477 PP

       MFS_1 173 ...peepperkrkspkeee...................................................................kgtgpaplvp... 198
                    + e+++++ ++pk e+                                                                            +   
  EGE26858.1 214 tpiFLEAHSERSFRPKHESmlsnmslstltnsqikqldhlpaiefqlsedtkmpdhsispssmtsppkineidqrtvttamrltskL--------Tsfa 304
                 777666666666666666699999999*******999999999******99999999999999999999888866666655554442........0344 PP

       MFS_1 199 .....awkallkdpvlwillialllfffgfsglltllplylqevlgls.....glllaglllallalvgailallagrlsdrlgrrrrlllalllllla 287
                       ++++++++ l i +i +++   ++ +ll+++p++l++  + s     ++l  g    l+ l++ai++l++g l+drl++   ++l++++l+la
  EGE26858.1 305 rssisFFQIICNKNML-ISIIPAIMLISIMVSLLIFTPILLVDLIDGSfriseTVLWFG--NVLAILFMAIGCLIFGILVDRLNP--GIVLTFGSLFLA 398
                 4455568888888833.344444444446666********9999999999877667777..66777777778***********99..666777777777 PP

       MFS_1 288 alglallavtssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                     +++++  +   + l +++l+Gf++g++ ++  +++  +  + +  ++s ++n++ +l g l 
  EGE26858.1 399 MQVALFFNHLRNGGEYGLiFFALFGFASGIIGAIPSVVVRLFPAKIRLTSVSIIYNIIIALIGGLL 464
                 77777777774555444438888******9755555555555555677789999998888766654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.064
       MFS_1 211 illialllfffgfsglltllp 231
                 i++++l l ++++s++ +++p
  EGE26858.1 481 IFIVSLSLLTMFISFYIYYIP 501
                 355555555666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1038  (0.057895); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 3478.42
//
Query:       EGE26859.1  [L=221]
Description: ribose-5-phosphate isomerase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-54  184.2   0.2    1.8e-54  184.0   0.2    1.1  1  Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoribois
      1e-06   28.8   0.3    2.9e-05   24.1   0.0    2.2  2  DeoRC           DeoR C terminal sensor domain
     0.0044   16.2   0.0     0.0077   15.4   0.0    1.4  1  Sugar-bind      Putative sugar-binding domain


Domain annotation for each model (and alignments):
>> Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   0.2     3e-58   1.8e-54       2     170 ..      51     212 ..      50     215 .. 0.94

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 3e-58
                     EEESSHHHHHHHHHTT--BE-GGCCSSEEEEEE--SEEETTS-EE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSTTSS-EEEEE-GGGHHHH CS
  Rib_5-P_isom_A   2 gvptSeqteelaeelgipllsldeveeidlaiDGaDevdedlnliKGgGgallrEKivaaaakkfiviadesKlveklgkfpvPveVlpfaleav 96 
                     +v++S+ te ++++lgi++ +l+++  +dl+iDGaDe+d + n+iKGgGgal+rEKivaaa+++fi+++d+sK+v++lgkfpv +eVlp a+++v
      EGE26859.1  51 AVASSQVTEDKLKALGIEIYDLNQLGVLDLYIDGADEIDAKGNMIKGGGGALTREKIVAAASNRFICMVDDSKIVNTLGKFPVAIEVLPQARSYV 145
                     69********************************************************************************************* PP

                     HHHHHHTTT-EEEE-TETTTTEE-B-TTS-EEEEEESSSBSSSHHHHHHHHHTSTTEEEESEE-S.--SEEEEEE CS
  Rib_5-P_isom_A  97 arelekllggkpelReakgkdgpvvTdngnlilDvkfeekiedpeelekelksipGVvetGlFlg.ladkvlvgk 170
                     arel + +gg+p++Re  g    +vTd gn+ilD++  + i+d++++e +l++i+GVv++G+F++  ad +l ++
      EGE26859.1 146 ARELVA-MGGDPVYRE--G----FVTDYGNVILDTYDLD-ITDAAKMEFTLNNIVGVVCHGIFASqSADLMLKAG 212
                     ****96.6*******8..6....************9865.55**********************75777776665 PP

>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   4.8e-09   2.9e-05       4      44 ..       9      48 ..       7      72 .. 0.85
   2 ?    2.6   0.0     0.019   1.1e+02     103     139 ..      88     124 ..      71     129 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 4.8e-09
       DeoRC  4 eeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknl 44
                ++K+  AkaA+++iedg+++ +++G+T+  l++ L++ + l
  EGE26859.1  9 TQKKSAAKAALSHIEDGMILGVGTGSTVNCLIELLPKVR-L 48
                79**********************************984.4 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.019
       DeoRC 103 idaegglttsdeeeaevkralieaarrvillaDssKf 139
                 ida+g++++        ++ +++a++r i ++D sK+
  EGE26859.1  88 IDAKGNMIKGGGGALTREKIVAAASNRFICMVDDSKI 124
                 5555555555555555667788899999********8 PP

>> Sugar-bind  Putative sugar-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-06    0.0077      41      77 ..      13      49 ..       3      55 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-06
                HHHHHHHHH--TTEEEEE-SSHHHHHHHHHTHHCCHT CS
  Sugar-bind 41 aaaqllesllkdgdvvgvgwGrtlsavaealtpkslr 77
                 aa+   s+++dg+++gvg+G t+ +++e l++ +l+
  EGE26859.1 13 SAAKAALSHIEDGMILGVGTGSTVNCLIELLPKVRLK 49
                57788889*********************99886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1757.38
//
Query:       EGE26860.1  [L=39]
Description: hypothetical protein EA1_05232 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 336.76
//
Query:       EGE26861.1  [L=304]
Description: hypothetical protein EA1_05237 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-49  166.7  30.2    2.1e-46  157.9  19.9    2.1  2  Lys_export  Lysine exporter LysO
  ------ inclusion threshold ------
        4.3    7.2   0.0        4.3    7.2   0.0    4.7  7  LapA_dom    Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> Lys_export  Lysine exporter LysO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.5   1.8e-06     0.016       9      76 ..      15      80 ..       7      95 .. 0.66
   2 !  157.9  19.9   2.4e-50   2.1e-46       2     189 ..     115     300 ..     114     301 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.8e-06
  Lys_export  9 llGlllllea..elleeelseylLylLlflvGislgsskelleklkklnlkllllplatilgsllgglla 76
                ++G++l +++  +++  ++ +yl+yl+l+++Gi+lg  ++l++k+  + + l++l       ++ +g++ 
  EGE26861.1 15 FVGFALPTSQklAAFGGQALTYLIYLILIVIGIELGLVDDLVQKVGDIIKYLVVLIT----LTIGFGAIS 80
                444433333333668999**********************99997776555544433....333333333 PP

  == domain 2  score: 157.9 bits;  conditional E-value: 2.4e-50
  Lys_export   2 laliaGillGllllleaelleeelseylLylLlflvGislgss.kelleklkklnlkllllplatilgsllggllaalll.glslkeslavasGfGwYS 98 
                 ++l++G++++ +l   + +  e+++++lL++LlflvG+sl+ s   l+++   +n+ +l +++++i++++l g+++a ++ +++l ++la+asG+GwYS
  EGE26861.1 115 ICLAIGFMAAKFLPAGF-IPPEKTTTILLMVLLFLVGVSLKGSgIGLKQA--LVNKTGLQVSVIFIFCTTLSGIIFASIFhEVTLMQGLALASGYGWYS 210
                 79999*****9887777.68999********************7887777..9**********************99999899**************** PP

  Lys_export  99 LsgilitelkgaelGtiallanllREllalllipllakrfgklaaisvaGatsmDttLPiitkssgkevvvlaivhGvilsllvPilvslf 189
                 Lsg+++t+++ga++G++all++l+RE++al++ip+++++ +++a +s++G+ts+D+tLP i ++ g++++++ai  G+i++++ P+l+ lf
  EGE26861.1 211 LSGTIMTDAYGAVWGSVALLNDLAREVIALIFIPWVMRYSTSVA-VSLGGVTSLDFTLPTILQAGGTQIMPIAISFGFIVNIVSPVLMVLF 300
                 **************************************999965.*******************************************998 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.8       1.1   9.5e+03      21      33 ..       8      20 ..       7      20 .. 0.83
   2 ?   -3.4   1.3         1   9.2e+03      20      31 ..      36      47 ..      28      52 .. 0.60
   3 ?    7.2   0.0   0.00048       4.3      20      51 ..      65      95 ..      60     102 .. 0.84
   4 ?    0.9   0.1     0.046   4.1e+02      20      34 ..     110     124 ..     103     129 .. 0.81
   5 ?   -0.6   0.9      0.13   1.2e+03      20      31 ..     140     151 ..     136     160 .. 0.84
   6 ?   -3.5   0.7       1.1   9.7e+03      21      36 ..     175     190 ..     172     192 .. 0.71
   7 ?   -3.0   0.8      0.77   6.9e+03       7      26 ..     282     302 ..     278     304 .] 0.45

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.1
    LapA_dom 21 llllvafgiGall 33
                ll+l  +++G+ l
  EGE26861.1  8 LLILSPMFVGFAL 20
                7899999999975 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1
    LapA_dom 20 sllllvafgiGa 31
                +l+ l+ ++iG+
  EGE26861.1 36 YLIYLILIVIGI 47
                556666666665 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00048
    LapA_dom 20 sllllvafgiGallgwllslwsylrlrrelrr 51
                +l++l+++ iG+ ++ l+++  ++ ++ +l++
  EGE26861.1 65 YLVVLITLTIGFGAISLVFF-DKFTQKNQLSK 95
                58999999999999999988.88888888876 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.046
    LapA_dom  20 sllllvafgiGallg 34 
                 sl  l++++iG++++
  EGE26861.1 110 SLAQLICLAIGFMAA 124
                 77789*******887 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.13
    LapA_dom  20 sllllvafgiGa 31 
                 +ll+++ f++G+
  EGE26861.1 140 ILLMVLLFLVGV 151
                 789999999998 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 1.1
    LapA_dom  21 llllvafgiGallgwl 36 
                 + ++ + + G++++ +
  EGE26861.1 175 IFIFCTTLSGIIFASI 190
                 6677788888887765 PP

  == domain 7  score: -3.0 bits;  conditional E-value: 0.77
    LapA_dom   7 tvnflfaqv.elpLsllllva 26 
                  ++f f      p+ ++l+ +
  EGE26861.1 282 AISFGFIVNiVSPVLMVLFSS 302
                 444443332244555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2428.52
//
Query:       EGE26862.1  [L=433]
Description: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-30  105.0   0.0    7.6e-30  104.3   0.0    1.3  1  FAD_binding_3   FAD binding domain
    3.9e-07   30.0   0.0    5.7e-07   29.4   0.0    1.3  1  DAO             FAD dependent oxidoreductase
    5.9e-07   29.0   0.0    1.2e-06   28.0   0.0    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      9e-07   29.0   0.0    1.9e-06   28.0   0.0    1.5  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    9.7e-06   26.1   0.0    1.9e-05   25.2   0.0    1.4  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    1.2e-05   25.6   0.0     0.0028   17.9   0.0    2.8  3  TrkA_N          TrkA-N domain
    1.5e-05   23.9   0.2    2.3e-05   23.3   0.2    1.2  1  HI0933_like     HI0933-like protein
    1.7e-05   24.1   0.1    2.7e-05   23.5   0.1    1.3  1  FAD_binding_2   FAD binding domain
    4.2e-05   23.2   0.1      7e-05   22.5   0.1    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    0.00011   21.4   0.1     0.0002   20.5   0.1    1.5  1  SE              Squalene epoxidase
     0.0012   18.2   0.0     0.0027   17.0   0.0    1.6  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
     0.0015   18.5   0.0     0.0024   17.8   0.0    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0025   17.5   0.0      0.004   16.8   0.0    1.3  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0029   16.9   0.1     0.0058   15.9   0.1    1.4  1  Thi4            Thi4 family
     0.0077   15.6   0.5      0.022   14.1   0.2    1.7  2  FAD_oxidored    FAD dependent oxidoreductase
     0.0087   15.4   0.0       0.02   14.3   0.0    1.6  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
      0.016   14.3   0.0      0.035   13.2   0.0    1.5  2  GIDA            Glucose inhibited division protein A
       0.03   13.6   0.2      0.064   12.5   0.2    1.5  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.046   14.4   0.0       0.11   13.2   0.0    1.6  1  PglD_N          PglD N-terminal domain
      0.063   13.9   0.0       0.14   12.8   0.0    1.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
        0.1   12.6   0.0       0.26   11.2   0.0    1.7  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
       0.12   12.6   0.0       0.19   11.9   0.0    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   9.4e-33   7.6e-30       2     315 ..      25     353 ..      24     379 .. 0.74

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 9.4e-33
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS..........S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC.CEE CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp..........radglnqrtmellrqlGledrilaegapnelmgealynelsdt.pka 86 
                    +d++I+GaG +G++ a lL+++G +v++++   t ++ +          r   ln  +++ll+++ ++d i ++++  +    +++++ +d  + +
     EGE26862.1  25 YDIAIIGAGVVGMVCAILLAKRGKQVIILDSKPTPSKASfdqrlaqrdaRVYALNLSSIDLLKSADVWDGITRRADYDQ---MHVWAR-DDFgELI 116
                    6899******************************9999889888888888889**********************4444...344554.2333333 PP

                    EEEHHCHHCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEE..EECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEE CS
  FAD_binding_3  87 radlelesspervtvypqteleriLvehaeerg.lqvrfkte..vesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefege 179
                      d ++  + +  +++  + l+ +L ++a++   l+++ +     +++  de      +r++++++ + v+ak l+GaDG  S vr+++g+ + + 
     EGE26862.1 117 FQDEHAFENIMLGSMVEPSVLDEALWHRAKAYEnLTLKYEISlaAHGMAFDEMPDGVCIRYQADNQAKMVKAKLLIGADGRASLVRREMGVGVDTL 212
                    3333333344444455555555555555554444444444443356666666666678899999**************************998888 PP

                    EEEEEEEEEEEEEEC-SCCCTTCCEEEEECCTTEE.EEEECCE.TEEE..EE..EEEECCE-GGGS...CCCHHHHHHHHHHHHHHTTSSCEE.EE CS
  FAD_binding_3 180 etvyeagvldvlfdadlsdiveplvlilsaesrgv.mviPlen.tler..fy..vqvearaekeer...sekfteeevkarlreivgektldv.ei 265
                    +   +a    +  d++  +     ++ +   ++g  +++P  n ++ +  ++  +++++ ++++e+   +  ++++ +++rl  ++g    d  +i
     EGE26862.1 213 NYHQKAICCAIRTDQPHGN-----TARQVMLPTGTlALLPIANlNQDDqcRWqsIVWTLPKQIAETylsDYHQNPDSLINRLALASGYVLGDIhKI 303
                    8554444444444444443.....333333333323777777765543113311445555566666776778999*****************99** PP

                    EEEEEEEEEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHH CS
  FAD_binding_3 266 eevsawtvaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLa 315
                    ++v +++++++ a++y+kg + l+GDAaH + P +GqGlN++++D+  L 
     EGE26862.1 304 QSVASFPLSAQAANRYHKGLIALMGDAAHGVHPLAGQGLNLGLSDVKALL 353
                    *********************************************99885 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0     7e-10   5.7e-07       1      38 [.      26      64 ..      26     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 7e-10
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSg 38
                d++iiG+G++G+ +A  La+rg  V++l++++ ++  aS 
  EGE26862.1 26 DIAIIGAGVVGMVCAILLAKRGkqVIILDSKPTPS-KASF 64
                8********************99********9998.7775 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.5e-09   1.2e-06     137     188 ..      19      71 ..       9      79 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.5e-09
                  CCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
  Pyr_redox_2 137 klkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaa 188
                  k++ ++ +i+++G+G++G+++A+ lak gk+v +++  +++   ++d++l+++
   EGE26862.1  19 KSQIKQYDIAIIGAGVVGMVCAILLAKRGKQVIILDSKPTPSkASFDQRLAQR 71 
                  55666789*********************************999999999876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.3e-09   1.9e-06       1      36 [.      29      64 ..      29      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.3e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   I+GaG+ G+v+A lLak+g++v +l++ + ++  + 
     EGE26862.1 29 IIGAGVVGMVCAILLAKRGKQVIILDSKPTPSKASF 64
                   9**************************998875555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.3e-08   1.9e-05       2      44 ..      27      70 ..      26      86 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.3e-08
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeask 44
                ++++G+G++g+ +A  la+ gk+V +++ ++++    +D+ +++
  EGE26862.1 27 IAIIGAGVVGMVCAILLAKRGKQVIILDSKPTPSkASFDQRLAQ 70
                89********************************9999999876 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.4e-06    0.0028       1      60 [.      27      91 ..      27      93 .. 0.85
   2 ?    4.4   0.0     0.052        42      43     107 ..     125     188 ..     114     196 .. 0.80
   3 ?   -2.8   0.0       9.1   7.5e+03      57      77 ..     343     364 ..     342     373 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.4e-06
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHH.....HHHHHHTTSEEEES-TTSHHHHHHTTG CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeer.....veelreeglevvvgdatdeevLeeagi 60
                i+iiG+G vG+  a  L ++gk+v++ d+++        ++l+++ ++v+  + ++ ++L++a++
  EGE26862.1 27 IAIIGAGVVGMVCAILLAKRGKQVIILDSKPTPskasfDQRLAQRDARVYALNLSSIDLLKSADV 91
                79*****************8879*******955333335677888899*************9986 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.052
                 EEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSGGGHHHHHH CS
      TrkA_N  43 evvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdpehaellkk 107
                 +++ g+  +++vL+ea   +a+a   +t ++e +++a  +a + +p+  +  r q + +a+++k 
  EGE26862.1 125 NIMLGSMVEPSVLDEALWHRAKAYENLTLKYEISLAAHGMAFDEMPD-GVCIRYQADNQAKMVKA 188
                 48899************************************888887.47777777777776654 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 9.1
                 HTTGGGESEEEE-SSSH.HHHH CS
      TrkA_N  57 eagiekadaviaatgdd.eani 77 
                 ++g+++++a++a+++ + ++n+
  EGE26862.1 343 NLGLSDVKALLALVDVYhAKNM 364
                 5799999999999998866665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   2.9e-08   2.3e-05       1      36 [.      25      60 ..      25      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.9e-08
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +d+++iG+G  G+ +Ai +akrgk+V++l++++++ 
   EGE26862.1 25 YDIAIIGAGVVGMVCAILLAKRGKQVIILDSKPTPS 60
                 589***************************998765 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   3.3e-08   2.7e-05       1      33 [.      26      58 ..      26      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 3.3e-08
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   D+ +iG+G+ G+++A+ +a++G++v++++ ++ 
     EGE26862.1 26 DIAIIGAGVVGMVCAILLAKRGKQVIILDSKPT 58
                   899*************************98875 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   8.6e-08     7e-05       3      32 ..      27      56 ..      25      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8.6e-08
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S- CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDid 32
                    i++iG+G vG+v+a++la++g++vi++D  
      EGE26862.1 27 IAIIGAGVVGMVCAILLAKRGKQVIILDSK 56
                    9**************************975 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   2.4e-07    0.0002     112     166 ..     301     358 ..     187     392 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.4e-07
          SE 112 gklrsmpnkflpasknek..kGli.llGDalnmRHPltggGmtvalnDivllskllkp 166
                 +k++s+++  l+a+  ++  kGli l+GDa    HPl g G+  +l+D++ l  l+  
  EGE26862.1 301 HKIQSVASFPLSAQAANRyhKGLIaLMGDAAHGVHPLAGQGLNLGLSDVKALLALVDV 358
                 467777777777766554449998689**********************999888764 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.3e-06    0.0027      26      76 ..      22      74 ..       4     103 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.3e-06
                 B---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH.HHHH.TTTCECE CS
  AlaDh_PNT_C 26 vepakvlviGgGvaGlqAiatakglgakVtvlDvrparle.qles.lgakfve 76
                 +++  + +iG+Gv+G+  +   ++ g +V +lD +p+  +  +++ l ++  +
   EGE26862.1 22 IKQYDIAIIGAGVVGMVCAILLAKRGKQVIILDSKPTPSKaSFDQrLAQRDAR 74
                 6678899*********999999999*********9975540344455555455 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     3e-06    0.0024       2      36 ..      27      61 ..      26     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3e-06
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseeale 36
                +a+iGaG++G   a ++a++g +V ++d ++   +
  EGE26862.1 27 IAIIGAGVVGMVCAILLAKRGKQVIILDSKPTPSK 61
                8***************************9776544 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     5e-06     0.004       1      35 [.      27      62 ..      27      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlea 35
                iai+GaG +G ++a  Lak g +v++++ ++   +a
  EGE26862.1 27 IAIIGAGVVGMVCAILLAKRGKQVIILDSKPtPSKA 62
                89************************9998866665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   7.1e-06    0.0058      15      50 ..      22      56 ..      17      62 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.1e-06
                HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 15 yaesDvvivGaGssGLtaayylakkpdlkvailers 50
                + + D++i+GaG  G+ +a  lak+ + +v+il+++
  EGE26862.1 22 IKQYDIAIIGAGVVGMVCAILLAKR-GKQVIILDSK 56
                5678*********************.99****9986 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   2.7e-05     0.022       1      32 [.      26      57 ..      26      60 .. 0.95
   2 ?   -1.1   0.0       1.1   8.9e+02      82     149 ..     125     201 ..      79     209 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  D+ ++G+g+ G+++Ai  a++G++v++++ ++
    EGE26862.1 26 DIAIIGAGVVGMVCAILLAKRGKQVIILDSKP 57
                  9**************************99876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
  FAD_oxidored  82 n.....tfepevakavleeml.aeagvtvllntrlveveke.gkriesvtveske.g.rktirAkvfiDATgdGdla 149
                   n     ++ep+v+ ++l +   a +++t+ ++  l +  +  ++  ++v+++ ++ +  k ++Ak+ i A g + l+
    EGE26862.1 125 NimlgsMVEPSVLDEALWHRAkAYENLTLKYEISLAAHGMAfDEMPDGVCIRYQAdNqAKMVKAKLLIGADGRASLV 201
                   14444577888876655444446789999999999888886555677888877665568999999999998888776 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.4e-05      0.02      28      74 ..      16      63 ..       4      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
                  CGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH.C CS
  2-Hacid_dh_C 28 allgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee.e 74
                  a++ +++++  ++iiG+G +G   a +l++ g +vi+ d ++++++ +
    EGE26862.1 16 AYPKSQIKQYDIAIIGAGVVGMVCAILLAKRGKQVIILDSKPTPSKaS 63
                  567789999********************************9988732 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.3e-05     0.035       1      28 [.      26      53 ..      26      72 .. 0.86
   2 ?   -3.4   0.0       4.7   3.8e+03     121     153 ..     212     244 ..     201     260 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.3e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                d+ +iG+G  G+ +A+ +a++G +v+++
  EGE26862.1 26 DIAIIGAGVVGMVCAILLAKRGKQVIIL 53
                789**********************998 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.7
                 EEECTTEEEE.EEETTS-EEEECEEEE--TT-BT CS
        GIDA 121 liveekkvkg.vvtedgetikakavviatGtflk 153
                 l+ ++k ++  ++t++ +  +a++v + tGt l+
  EGE26862.1 212 LNYHQKAICCaIRTDQPHGNTARQVMLPTGT-LA 244
                 5555555444388888888889999999999.54 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   7.9e-05     0.064       2      30 ..      29      56 ..      28      65 .. 0.90
   2 ?   -3.6   0.0       6.3   5.1e+03      74     104 ..     362     392 ..     345     393 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.9e-05
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkg 30
                 IiGaG  G+ +ai l k g  +++il+ +
   EGE26862.1 29 IIGAGVVGMVCAILLAKRGK-QVIILDSK 56
                 9******************9.799*9976 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.3
  Pyr_redox_3  74 keeklsrkealeYlrevaksfelpiklfeeV 104
                  k+  ls++ + +Y r+v  ++ l  + f+++
   EGE26862.1 362 KNMPLSTRLLSDYERTVKGHNSLMMHSFSMI 392
                  5556667777889999999999988888776 PP

>> PglD_N  PglD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00013      0.11       1      35 [.      26      58 ..      26      78 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00013
      PglD_N  1 kivIiGaGGhgkvvadiieangeyeiigflDdnkk 35
                +i+IiGaG  g v+a ++ ++g  + +++lD++++
  EGE26862.1 26 DIAIIGAGVVGMVCAILLAKRG--KQVIILDSKPT 58
                69********************..78889999874 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00017      0.14       2      45 ..      27      67 ..      26      91 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00017
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHH CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaee 45
                   i+iiGaG +g   a  l+++g   +++++  s+   + +++ ++
     EGE26862.1 27 IAIIGAGVVGMVCAILLAKRG---KQVIILDSKPTPSKASFDQR 67
                   9********************...88886644433333344444 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00032      0.26       2      32 ..      27      57 ..      26      82 .. 0.86
   2 ?   -2.9   0.0       7.4   6.1e+03      71      92 ..     260     281 ..     216     308 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00032
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-H CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvree 32
                    ia++GaG  G   A++la++g++v +   ++
      EGE26862.1 27 IAIIGAGVVGMVCAILLAKRGKQVIILDSKP 57
                    9***********************9988776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.4
                     -EEEE---HHHHHHHHHHHCCC CS
  NAD_Gly3P_dh_N  71 diivlvvPsqalrevlkklkgl 92 
                     + iv+ +P+q+ ++ l + ++ 
      EGE26862.1 260 QSIVWTLPKQIAETYLSDYHQN 281
                     5567777777766666655554 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00024      0.19       1      42 [.      26      67 ..      26      92 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg 42
                   +i++iG Gv G+  a  l+k+g +v++ + ++   ++  +++
     EGE26862.1 26 DIAIIGAGVVGMVCAILLAKRGKQVIILDSKPTPSKASFDQR 67
                   69***************************9998887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3391.08
//
Query:       EGE26863.1  [L=469]
Description: glutamine synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.6e-128  428.5   0.0   1.9e-128  428.3   0.0    1.0  1  Gln-synt_C  Glutamine synthetase, catalytic domain
      4e-29  100.2   0.1    8.6e-29   99.1   0.1    1.6  1  Gln-synt_N  Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.3   0.0  2.2e-132  1.9e-128       2     345 .]     102     466 ..     101     466 .. 0.97

  Alignments for each domain:
  == domain 1  score: 428.3 bits;  conditional E-value: 2.2e-132
                 T-HHHHHHHHHHHHHHTTC..EEEEEEEEEEEEESEECCCE.SSEEEEEEE.T..............B...B.TSS-TTBHCCCCCTCCHHHHHHHHHH CS
  Gln-synt_C   2 rdPRsvlkralarlaeeGl..tvvvgpElEFflfdkeedke.asksllevdse..............ekgrpaekggyfsvapvdeaedlrreiveale 83 
                 +dPRs+++ra+++l+++G+  t+++gpE+EFf+fd+++++  +s+  +++ se              +++rpa kggy  +ap+d  +d+r+ +++ +e
  EGE26863.1 102 KDPRSIARRAETYLKSTGIgdTAYFGPEPEFFVFDDVKWQIdESGAQHSISSEaaswssnkeyawgnNGQRPALKGGYAVTAPMDYYHDMRAVMCDRIE 200
                 79*************************************9977777777877799************99*****************************9 PP

                 HTT..--EECCEEECCCTEEEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSGGGB-HHHHH CS
  Gln-synt_C  84 alg..ieveashhEvatgQvEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadeddeyalselarh 180
                 ++    +ve +hhEva gQ Ei+++f++++k+aD+v+ fK+vv++vA++ g+tatFmpKp+ gdnGsgmHvh+S++ k+g n f++++   +ls +a++
  EGE26863.1 201 DIMgeGRVEVHHHEVASGQLEIGVSFNTLVKKADEVQQFKYVVQNVANQFGKTATFMPKPIVGDNGSGMHVHISIS-KEGVNTFSGDE-YAGLSMTALY 297
                 8741257*********************************************************************.**********8.455******* PP

                 HHHHHHHHHHHHHHHHS-SCCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-.TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--------S- CS
  Gln-synt_C 181 figGllkhakaltaltaptvnSYkRlvpgyeaPvalawgarNRsallRipa.skekakrvElRlpdasaNPYLalAallaAgldGienklepgepvekd 278
                 figG++kha+al+a+t+ptvnSYkRlvp++eaP++la++a+NRsa++Rip+ s++ka r+E R+pd++aNPYL++Aall+Ag+dGienk++pge+++k+
  EGE26863.1 298 FIGGIIKHARALNAITNPTVNSYKRLVPHFEAPIKLAYSASNRSASIRIPHvSSPKAVRIEARFPDPAANPYLCFAALLMAGIDGIENKIDPGEAADKN 396
                 *************************************************************************************************** PP

                 SSSS-TTTHTSS-B--SSHHHHHHHHHCS.HHHCC..SS-HHHHHHHHHHHHHCHHHHHCT--HHHHHHH CS
  Gln-synt_C 279 lyelspeerkgieelPasleeAlealeed.ellke..vlgeevieaylalkraEleeleeevsdwelery 345
                 ly+l+pee++ i++++++le+Al+al++d ++l +  v+++++i+ay++lk++E+++l+e+v+++e++ y
  EGE26863.1 397 LYDLPPEEEALIPTVAENLETALKALKQDhAFLLKgdVFSKDMIDAYIDLKMQEVHKLNEAVHPLEFDLY 466
                 *****************************98888889******************************987 PP

>> Gln-synt_N  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.1   9.6e-33   8.6e-29       2      83 .]      14      94 ..      13      94 .. 0.98

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 9.6e-33
                --EEEEEEE-SSS-EEEEEEEHHHHHHHTTTT-EEEETTSSTTT------EEEEEEEGGGEEE-SS-SS-.EEEEEEEEE-T CS
  Gln-synt_N  2 vkfvdlqFtDikgklkhvtipadelsedaleegvsFDGSsiegfaeieeSDmlLkPdlstavidPfreekktarvicdvydp 83
                +k+vd++FtD++gk  h+t+pa+ ++ed+le+g +FDGSs++g+++ie+SDm+L Pd++ta++dPf e++ t++v cdv++p
  EGE26863.1 14 AKWVDFRFTDTHGKELHLTFPASTVDEDTLEDGKMFDGSSVAGWKGIESSDMILLPDAKTAYLDPFYESP-TVVVSCDVIEP 94
                589*****************************************************************99.********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3692.38
//
Query:       EGE26864.1  [L=101]
Description: hypothetical protein EA1_05252 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-05   23.3   1.0      8e-05   22.9   1.0    1.1  1  DUF4149   Domain of unknown function (DUF4149)
  ------ inclusion threshold ------
      0.088   12.9   0.5       0.13   12.3   0.5    1.3  1  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> DUF4149  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   1.0   8.9e-09     8e-05       7      96 ..       4      97 ..       2      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 8.9e-09
     DUF4149  7 lGsqlwvtfvvapvlfrsL....prhqfgelqsklFplyfglglalsvlllltevavgseklaseellqlllllv.vllltllnafylepritsl 96
                lG +l+ ++v +++ f +L    p+ q+g++     p++ g  l++ +++l  +v+ g +    ++   + ++ v +l+ t++++f+l p +t++
  EGE26864.1  4 LGYLLMGGIVYTIGFFINLkrlhPKRQAGAVICVTHPIMIGYLLGCFMIMLGVSVLLG-RFVLHHDGPDWAFIGVnSLVATVVFYFGLNPDTTKM 97
                788899999*********88889********************************999.4444455666665555278899***********997 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   1.5e-05      0.13      54     118 ..       3      63 ..       1      69 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
        DHHC  54 fllylllllilalvlllialvklveeekkseflavtllkkllsilllvlsllfllllgllllfhl 118
                 fl yll+  i++++ ++i l +l +++++  + +vt +     ++ ++l +++++l +++ll ++
  EGE26864.1   3 FLGYLLMGGIVYTIGFFINLKRLHPKRQAGAVICVTHPI----MIGYLLGCFMIMLGVSVLLGRF 63 
                 8999*************************9999998886....7777777777777766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 846.49
//
Query:       EGE26865.1  [L=167]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1259.62
//
Query:       EGE26866.1  [L=534]
Description: glucosyltransferase Lgt3 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-34  118.7   0.6    3.2e-16   59.6   0.1    2.5  2  Glycos_transf_2  Glycosyl transferase family 2
    3.4e-19   69.1   1.7    2.1e-08   34.5   0.2    2.8  2  Glyco_tranf_2_4  Glycosyl transferase family 2
    4.2e-08   33.0   0.0     0.0061   16.1   0.0    2.6  3  Glyco_tranf_2_2  Glycosyltransferase like family 2
      1e-05   25.6   0.1      0.055   13.3   0.0    2.2  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.018   14.1   0.0          3    6.8   0.0    3.0  3  Glyco_transf_17  Glycosyltransferase family 17
       0.24   11.9   0.9       0.82   10.1   0.1    2.0  2  RsfS             Ribosomal silencing factor during starvation


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   1.1e-19   3.2e-16       1     129 [.      10     129 ..      10     157 .. 0.88
   2 !   57.2   0.0   5.7e-19   1.7e-15       1     122 [.     284     398 ..     284     449 .. 0.79

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.1e-19
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      svv+++ Ne+++l+ +l ++++      +eii++D gStD+ ++i++++     + +   ++  +G+++ +  + ++atgd+il lDaD +++p
       EGE26866.1  10 SVVMIVKNEADNLKVSLPAIADW----VDEIIILDSGSTDDGQKIAQSH-----GAKWHVNTDWQGFGRQRQLAQAYATGDWILALDADEVVTP 94 
                      8**********************....**********************.....77888888777***************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetdeiern 129
                      +    +++ ++++++d v+g  +  f+  ++i  +
       EGE26866.1  95 QLKNSILKVIKNPPTDTVYGIKRLDFVFGHQIDNA 129
                      ****************9999877777666666555 PP

  == domain 2  score: 57.2 bits;  conditional E-value: 5.7e-19
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESS...EE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaD...de 91 
                      s v+++ Ne+k l+++le + ++     +eiiv+D gStD+t++i+e +     + +   ++  +G+++ +  + ++atgdy+l lDaD   d+
       EGE26866.1 284 SLVMICKNESKHLKACLETVHDI----VDEIIVLDSGSTDNTRQIAEIY-----GAKWHVNTDWQGFGKQRQLAQAYATGDYVLALDADerlDQ 368
                      789********************....**********************.....777777776779***********************44445 PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEECC CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprifge 122
                      p ++ + ++++   +  ++v+ ++r+ +f +
       EGE26866.1 369 PLRQAITDVLKNPVQ-TDKVFSVARVNTFCG 398
                      555566666666666.444777777666655 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   1.9e-11   5.6e-08       1      87 [.      16      95 ..      16     104 .. 0.89
   2 !   34.5   0.2   7.2e-12   2.1e-08       1      89 [.     290     371 ..     290     378 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.9e-11
  Glyco_tranf_2_4  1 rneadiLpeflahhlalgfdrilvydndstDgtrailkelpevkllhvdksyederrqvellkallaryaeadwvlvvDaDEflvvp 87
                     +nead L+  l ++ ++ +d+i+++d +stD+  +i +++     +hv ++++    ++ + ++l++ ya +dw+l++DaDE+++ +
       EGE26866.1 16 KNEADNLKVSLPAIADW-VDEIIILDSGSTDDGQKIAQSH--GAKWHVNTDWQ----GFGRQRQLAQAYATGDWILALDADEVVTPQ 95
                     79***************.******************9997..66788889996....6888899999***************99865 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 7.2e-12
  Glyco_tranf_2_4   1 rneadiLpeflahhlalgfdrilvydndstDgtrailkelpevkllhvdksyederrqvellkallaryaeadwvlvvDaDEflvvpds 89 
                      +ne + L+++l+   ++ +d+i+v+d +stD+tr+i + +     +hv ++++    ++   ++l++ ya +d+vl++DaDE l  p +
       EGE26866.1 290 KNESKHLKACLETVHDI-VDEIIVLDSGSTDNTRQIAEIY--GAKWHVNTDWQ----GFGKQRQLAQAYATGDYVLALDADERLDQPLR 371
                      799**************.******************9886..44577778885....6888889999***************9877765 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     2e-06    0.0061      29     107 ..      33     105 ..      10     115 .. 0.77
   2 ?   -2.6   0.0         1     3e+03      19      43 ..     139     165 ..     136     174 .. 0.73
   3 !   14.0   0.0   8.4e-06     0.025      27      92 ..     305     364 ..     286     395 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2e-06
  Glyco_tranf_2_2  29 eielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfekilklit 107
                        e+i++d gS+++  +++ +   ++ +v    +d    + ++ r +   +a +d +l lDaD  +++   + ilk+i+
       EGE26866.1  33 VDEIIILDSGSTDD-GQKIAQSHGAKWHVN---TDW--QGFGRQRQLAQAYATGDWILALDADEVVTPQLKNSILKVIK 105
                      5689**********.555555555555555...333..477899************************99999999876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1
  Glyco_tranf_2_2  19 vlqkakyydeei..elivvddgSsekf 43 
                      +  k+++yd+++  e ++++d  ++k+
       EGE26866.1 139 LYPKKFQYDNNLvhESVILNDATTKKL 165
                      566888998885448899999988883 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 8.4e-06
  Glyco_tranf_2_2  27 deeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDc 92 
                      d   e+iv+d gS+++   ++  i  ++ +v   d      + ++ r +   +a +d+vl lDaD 
       EGE26866.1 305 DIVDEIIVLDSGSTDN-TRQIAEIYGAKWHVN-TDW----QGFGKQRQLAQAYATGDYVLALDADE 364
                      66679***********.7899*********98.343....37788999*****************6 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00017      0.51      71     127 ..      66     119 ..      11     155 .. 0.75
   2 !   13.3   0.0   1.8e-05     0.055       7     126 ..     286     397 ..     281     434 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00017
  Glyco_tranf_2_3  71 gstgksralnealra.vksdlvllvDdDtvvePdtlkrllqffltpkvgavgtpvfll 127
                      g+ g+ r   +  +a +++d++l +D+D vv P +  ++l +++ p  + v++ ++l+
       EGE26866.1  66 GF-GRQR---QLAQAyATGDWILALDADEVVTPQLKNSILKVIKNPPTDTVYGIKRLD 119
                      44.3333...22333256*****************99999999999999999888775 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.8e-05
  Glyco_tranf_2_3   7 lVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdDtvv 100
                      +  + ne++ l ++le +     + +e++v + +s++ t++ a    +++++ + +  vn++  g+ gk r l++a+  +++d+vl +D+D ++
       EGE26866.1 286 VMICKNESKHLKACLETVHD---IVDEIIVLDSGSTDNTRQIA----EIYGA-K-WH-VNTDWQGF-GKQRQLAQAY--ATGDYVLALDADERL 366
                      44445888888888887777...689************98866....47987.4.43.47777899.9988555544..559************ PP

  Glyco_tranf_2_3 101 ePdtlkrllqff....ltpkvgavg.tpvfl 126
                      +  + ++++ ++    +t+kv  v  ++ f+
       EGE26866.1 367 DQPLRQAITDVLknpvQTDKVFSVArVNTFC 397
                      8777788888876666666776666444455 PP

>> Glyco_transf_17  Glycosyltransferase family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0   0.00099         3      74     114 ..       8      48 ..       1      61 [. 0.87
   2 ?    2.3   0.0     0.024        71     171     250 ..      78     160 ..      69     169 .. 0.79
   3 ?    0.9   0.0      0.06   1.8e+02      69     110 ..     277     318 ..     249     380 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00099
  Glyco_transf_17  74 rvfDavlfsneldlleirlkelapvvdkfvilesnstftGl 114
                      r+  ++++ ne d l++ l  +a+ vd+ +il+s st  G+
       EGE26866.1   8 RLSVVMIVKNEADNLKVSLPAIADWVDEIIILDSGSTDDGQ 48 
                      66678899****************************98876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.024
  Glyco_transf_17 171 eeddllimsDvDeipsaht.ielLkaCdgipevlhLelrnylYsfeflvdeksWrasvhky.eegktkYrhsrqsdl.ilada 250
                      +++d ++  D+De+ + +   ++Lk  ++ p+     ++   + f +++d++ W  ++h    ++k +Y+   + ++ il da
       EGE26866.1  78 ATGDWILALDADEVVTPQLkNSILKVIKNPPTDTVYGIKRLDFVFGHQIDNALWGVKAHWRlYPKKFQYDNNLVHESvILNDA 160
                      578899999****9987751579*******************************87776322455888988776654155565 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.06
  Glyco_transf_17  69 reeprrvfDavlfsneldlleirlkelapvvdkfvilesnst 110
                       +++  +  +++  ne   l+  l+ ++++vd+ ++l+s st
       EGE26866.1 277 SQKKSTLSLVMICKNESKHLKACLETVHDIVDEIIVLDSGST 318
                      4444455667888999999999****************9988 PP

>> RsfS  Ribosomal silencing factor during starvation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.68     2e+03      22      56 ..      28      61 ..      10      97 .. 0.57
   2 ?   10.1   0.1   0.00027      0.82      11      57 ..     267     318 ..     260     350 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.68
                TTTBSS-SEEEEEEESSHHHHHHHHHHHHHHHHHC CS
        RsfS 22 ekkssladymviatakserhlkalaeelekklkee 56
                +  +++ d ++i    s+   +++a++   k + +
  EGE26866.1 28 A-IADWVDEIIILDSGSTDDGQKIAQSHGAKWHVN 61
                3.467888888888888888888888766655433 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00027
                 T-EEEEEEE-TTTTBSS-SEEEEEEESSHHHHHHHHHHHHHHHHHC........ CS
        RsfS  11 kaedivvidlrekkssladymviatakserhlkalaeelekklkee.......a 57 
                  a++++ i++++kk s   +++i+  + ++hlka+ e +++ + e        +
  EGE26866.1 267 MAQNLKPINVSQKK-STLSLVMIC-KNESKHLKACLETVHDIVDEIivldsgsT 318
                 57899999***954.444455555.57789*************98766665541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3814.23
//
Query:       EGE26867.1  [L=95]
Description: galactosyltransferase Lgt2B/C, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-33  113.7   0.2    1.1e-32  113.6   0.2    1.0  1  Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthe


Domain annotation for each model (and alignments):
>> Glyco_transf_25  Glycosyltransferase family 25 (LPS biosynthesis protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.2     6e-37   1.1e-32       1      99 [.       1      94 [.       1      95 [] 0.94

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 6e-37
  Glyco_transf_25  1 mikiyvisLkesqeRrehikkeleklkiefqffdAidgkekeeellqkllnsklakkyvgkeLtlgelGCylSHyllWekcvelnleyiiIlEDDv 96
                     mi+++vis+k++++Rrehi  e+ k++i f+ffdA+++ + ++  +qkl+ + ++++    +Lt+ge++C+lSH++lW++++++nl+y++I+EDDv
       EGE26867.1  1 MIQNFVISIKTATKRREHIMCEFGKQGIAFEFFDAVTPTDISK-YAQKLSIPIINNQ----RLTDGEKACFLSHVALWQQMIDENLDYMAIFEDDV 91
                     899***************************************9.6777777777777....7********************************** PP

  Glyco_transf_25 97 ils 99
                     +l+
       EGE26867.1 92 YLG 94
                     *97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 747.09
//
Query:       EGE26875.1  [L=30]
Description: hypothetical protein EA1_04647 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 252.56
//
Query:       EGE26876.1  [L=60]
Description: hypothetical protein EA1_04652 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.09   11.6   0.1       0.09   11.6   0.1    1.0  1  DUF267    Caenorhabditis protein of unknown function, DUF267


Domain annotation for each model (and alignments):
>> DUF267  Caenorhabditis protein of unknown function, DUF267
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     5e-06      0.09     179     205 ..      20      46 ..      10      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-06
      DUF267 179 aiyvlvntalaREieyFNeELekakke 205
                  ++  +n+a++RE+e F +E +k+k+e
  EGE26876.1  20 DMFSCLNQAMSRETEKFHQEQKKVKEE 46 
                 58999*****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1925  (0.107368); expected 358.6 (0.02)
Passed bias filter:                      786  (0.0438396); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 524.07
//
Query:       EGE26877.1  [L=244]
Description: hypothetical protein EA1_04657 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2100.21
//
Query:       EGE26879.1  [L=112]
Description: putative glutamate 5-kinase, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 883.13
//
Query:       EGE26880.1  [L=115]
Description: hypothetical protein EA1_04637 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 956.41
//
Query:       EGE26881.1  [L=45]
Description: hypothetical protein EA1_04642, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.035   14.1   0.0      0.042   13.8   0.0    1.1  1  RHH_1     Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.4e-06     0.042       5      36 ..       9      40 ..       8      43 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.4e-06
                EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHH CS
       RHH_1  5 rldeellerLdelarrrgrSrSelIReAlrey 36
                +l  +++e++  l +r++  + +lI +A+r+y
  EGE26881.1  9 TLKLDDIELIKSLSKRLNIPQNQLIMDAVRAY 40
                688899************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 373.98
//
Query:       EGE26889.1  [L=30]
Description: hypothetical protein EA1_04612, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 235.59
//
Query:       EGE26890.1  [L=122]
Description: hypothetical protein EA1_04617 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 976.19
//
Query:       EGE26891.1  [L=255]
Description: putative phage head morphogenesis protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.4e-10   39.2   0.1    1.4e-09   38.7   0.1    1.3  1  Phage_Mu_F  Phage Mu protein F like protein


Domain annotation for each model (and alignments):
>> Phage_Mu_F  Phage Mu protein F like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.1   7.9e-14   1.4e-09       2     111 ..     132     244 ..     131     245 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 7.9e-14
  Phage_Mu_F   2 kirdavtqaiarGegeeelakelkkr.........gqlssrsrlrtiartetlraynaarlaqeaaskevkkekwryvavkdsrtrpeHaaldGkvfkv 91 
                 ki +a+  a a+G  ++el + ++            q++ r  ++tia t t+ + ++a+ +  + +k+  k   +  a+ d rt+ ++++ldG ++ +
  EGE26891.1 132 KISNAISYAYANGLPNQELVRIIRGTrknryqdgiLQITTR-HAKTIAHTGTAIVASQAKQQFIHDNKDIIKG-IKVIATLDLRTSGICRHLDGEIMPI 228
                 78899999999999999999999888888999999667667.9***********9999999777777777555.7999********************* PP

  Phage_Mu_F  92 ddpfwqtgappedvnCRCrv 111
                 d  +    +pp ++nCR+++
  EGE26891.1 229 DKAV----YPPYHYNCRTSF 244
                 *999....9********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1880.26
//
Query:       EGE26892.1  [L=28]
Description: putative phage head morphogenesis protein, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 229.10
//
Query:       EGE26893.1  [L=144]
Description: hypothetical protein EA1_04602, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-32  113.3   0.2    1.8e-32  112.7   0.2    1.3  1  DUF4393   Domain of unknown function (DUF4393)


Domain annotation for each model (and alignments):
>> DUF4393  Domain of unknown function (DUF4393)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.2   9.9e-37   1.8e-32       2      76 ..      70     144 .]      69     144 .] 0.99

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 9.9e-37
     DUF4393   2 lekipeenlqepkpniavpalealrytldeeeLremFanLLassmdkrkkesvhpaFveIikqLspdeAklLkil 76 
                 +ekip+++l++p+++i++palea+r++++ee++remFanL++s+md+rk++++h+aFveIik+Lsp +Ak+Lk+l
  EGE26893.1  70 IEKIPANALKDPNVAIIGPALEASRFHMNEENIREMFANLIVSAMDERKDGQMHHAFVEIIKSLSPLDAKNLKYL 144
                 79***********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1230.45
//
Query:       EGE26894.1  [L=98]
Description: peptidase S24-like protein, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-11   43.5   0.0    2.6e-11   43.3   0.0    1.1  1  Peptidase_S24  Peptidase S24-like
  ------ inclusion threshold ------
      0.098   13.0   0.0       0.16   12.3   0.0    1.5  1  Phage_CI_C     Bacteriophage CI repressor C-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   2.9e-15   2.6e-11       3      63 ..       8      69 ..       6      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 2.9e-15
                   XSSTTCCTXXTTXEEEEECTS.---TTSEEEEEETTCE-EEEEEEEEETTEEEEE.SST.T.ST CS
  Peptidase_S24  3 pGdSMeptlldGdlilVdkfs.epkrGdivvfrlpgeeeayiKrviglpgdrvllasnn.e.yp 63
                   ++dSM+p  +dGd+i +dk++ e+k+G i ++r  +    ++Kr+++lp++ v++ s+n +  p
     EGE26894.1  8 RDDSMMPYVQDGDTIYIDKGRkEIKDGRIFAIRFGEL--CLCKRLYRLPDGGVRIVSDNsDeFP 69
                   68*******************7777777777777666..9****************99965344 PP

>> Phage_CI_C  Bacteriophage CI repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.7e-05      0.16      35      85 ..      15      65 ..       4      91 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
  Phage_CI_C 35 vieeekklylvdkkeadvsdGk.wLvdieGrlsirelariPvkklrvsgdev 85
                ++++++++y +dk  ++++dG+ + +        ++l+r+P + +r+ +d++
  EGE26894.1 15 YVQDGDTIY-IDKGRKEIKDGRiFAIRFGELCLCKRLYRLPDGGVRIVSDNS 65
                456666665.7**********934566666677899**********987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 756.96
//
Query:       EGE26948.1  [L=42]
Description: hypothetical protein EA1_03840, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.054   13.9   0.2      0.057   13.8   0.2    1.1  1  DUF3634   Protein of unknown function (DUF3634)


Domain annotation for each model (and alignments):
>> DUF3634  Protein of unknown function (DUF3634)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   3.2e-06     0.057       2      27 ..       3      28 ..       2      37 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.2e-06
     DUF3634  2 lvilvavalvfklvaadrevlevkfk 27
                l+i +av+ ++kl+ ++ ev+++++ 
  EGE26948.1  3 LFIYLAVFCIYKLIGENSEVFRLQYM 28
                79*******************99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 321.25
//
Query:       EGE26949.1  [L=225]
Description: DJ-1/PfpI family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-17   62.1   0.0    9.3e-17   61.3   0.0    1.4  1  DJ-1_PfpI  DJ-1/PfpI family
    2.6e-09   37.0   0.0    2.5e-08   33.9   0.0    2.0  1  ThiJ_like  ThiJ/PfpI family-like


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0     1e-20   9.3e-17      14     164 ..      25     221 ..      19     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1e-20
                 HHHHHHHHHHHHTTEEEEEEESS...................TSEEEETTS....EEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHH CS
   DJ-1_PfpI  14 vElivpvdvlkragikvdvvsvd...................keevkgsrG....lkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvke 89 
                  E+ +p+ ++k ag +++++s+                    +e  k+  +    +++  +++l ++kaa+yDa+  pGG+    +l+ +e+ ++l+++
  EGE26949.1  25 EEFASPYYAFKDAGADITLASPAgsqppldpksdepdaqtefTERFKQ--DaaakEQLATTHKLANIKAADYDAVFYPGGHGPMWDLAVDEQSISLIQD 121
                 6999*********************99999999888776544222222..233557777788888*****************999************** PP

                 HHHTT-EEEEETTTHHHHHHTTT.....TTTSEE--SGGGHHHH...............HHTTSEE-SS.....SEEEETTEEEESSGGGHHHHHHHHH CS
   DJ-1_PfpI  90 faekgklvaaICagpqlLaaagv.....lkgrrvTsypavkdkl...............ekagakyvdk.....rvvvdgnlvTsrgpgaaiefalell 163
                 f++ +k+va +C++p  L + ++     +k ++vT++ + +++                +++g ky+        vv dg l+T ++p ++++ a+ l+
  EGE26949.1 122 FVKTDKPVAFVCHAPAALKNVKIdgeyfVKDKKVTGFSNSEEQAvglldvvpflledvlKENGGKYEKVanwqsYVVEDGLLITGQNPASSEDTAKRLI 220
                 ******************99875555559**********997766889999999999997777777666779999**************9999988887 PP

                 H CS
   DJ-1_PfpI 164 e 164
                 +
  EGE26949.1 221 Q 221
                 5 PP

>> ThiJ_like  ThiJ/PfpI family-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.8e-12   2.5e-08       4     141 ..      20     142 ..      18     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2.8e-12
   ThiJ_like   4 eGydvtevaipwkvlkdagfsveFvtekgkvpkadekllsgikak.llgaskeakdiYkelstleeFkeplslssesFsleeydlvllpGGsdkavrel 101
                 +G++ +e a p+  +kdag  ++ +++ g  p  d k  ++  ++ +    k+ +++ ++l t++        +  + +  +yd+v+ pGG++++    
  EGE26949.1  20 TGFWLEEFASPYYAFKDAGADITLASPAGSQPPLDPKSDEPDAQTeFTERFKQDAAAKEQLATTH--------KLANIKAADYDAVFYPGGHGPMWDLA 110
                 8********************************99998877544303333344444444444444........45567789***************777 PP

   ThiJ_like 102 leserlhsllveylklvkrekepskvlgaicqgvlalafa 141
                 ++++++ sl+++++       + +k ++ +c+  +al++ 
  EGE26949.1 111 VDEQSI-SLIQDFV-------KTDKPVAFVCHAPAALKNV 142
                 777776.689***9.......4578999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1693.64
//
Query:       EGE26950.1  [L=32]
Description: hypothetical protein EA1_03860 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       194  (0.0108205); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 254.96
//
Query:       EGE26951.1  [L=71]
Description: IclR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00028   20.7   0.0    0.00029   20.7   0.0    1.0  1  IclR      Bacterial transcriptional regulator


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.6e-08   0.00029      51     113 ..       2      63 ..       1      71 [] 0.89

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.6e-08
                 -SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEEEETTTSHHHHHHH CS
        IclR  51 tdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvsgptarlteeelke 113
                 td ++L++e  +++++  ++d++   +g++ci+  i     +v  +++vs + + +++++++ 
  EGE26951.1   2 TDFNQLKDEFLHIKQTRLSLDDGQLRLGMTCIGTYIQS-PDKVKLGIAVSLSNSEYDDKKVQI 63 
                 78899*******************************87.889999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 564.58
//
Query:       EGE26952.1  [L=55]
Description: hypothetical protein EA1_03870 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00013   21.8   0.0    0.00014   21.7   0.0    1.1  1  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00035   20.3   0.1    0.00042   20.1   0.1    1.1  1  HTH_IclR        IclR helix-turn-helix domain
     0.0016   18.3   0.1     0.0018   18.2   0.1    1.1  1  HTH_11          HTH domain
  ------ inclusion threshold ------
      0.018   15.3   0.1      0.022   14.9   0.1    1.0  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.018   14.9   0.0      0.022   14.6   0.0    1.1  1  MarR_2          MarR family
      0.024   14.4   0.0      0.026   14.3   0.0    1.1  1  LexA_DNA_bind   LexA DNA binding domain
      0.042   13.7   0.0      0.059   13.2   0.0    1.2  1  HTH_23          Homeodomain-like domain
      0.052   13.5   0.0       0.06   13.3   0.0    1.1  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.078   13.4   0.1       0.13   12.7   0.1    1.4  1  DUF4072         Domain of unknown function (DUF4072)
        0.1   12.8   0.1       0.12   12.6   0.1    1.1  1  Ribosomal_S25   S25 ribosomal protein
       0.15   12.2   0.1       0.18   12.0   0.1    1.2  1  FUR             Ferric uptake regulator family


Domain annotation for each model (and alignments):
>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   8.5e-08   0.00014      21      55 ..      10      44 ..       3      48 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.5e-08
                CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEE CS
        TrmB 21 gpatadeiaeelgvprskvYevLrsLedkGlVere 55
                 p ++ +i +el++ rs+ Y++L+ L+ kG+ +++
  EGE26952.1 10 SPVSTATITKELKLARSTTYNILQALSAKGVLHKV 44
                5778899***********************98876 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   2.6e-07   0.00042      15      51 ..       8      44 ..       5      45 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.6e-07
                TBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR 15 apqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                 + +++ + + +++ l++St++++Lq L   G + + 
  EGE26952.1  8 SASPVSTATITKELKLARSTTYNILQALSAKGVLHKV 44
                56678889999*********************99875 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.1e-06    0.0018      11      48 ..       7      48 ..       3      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
      HTH_11 11 eargpisgeeLAeeLnvSrrtvrrdIkaLeelg....vpIes 48
                ++ +p+s +++ +eL++ r+t ++ ++aL+++g    vpI+ 
  EGE26952.1  7 QSASPVSTATITKELKLARSTTYNILQALSAKGvlhkVPIIT 48
                77899****************************999988875 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   1.4e-05     0.022      14      55 ..       3      44 ..       3      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
                    HHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
  Fe_dep_repress 14 YtlseekkvvktkdlaerLnvspssVsemlkkLekdGyveye 55
                    Y++  + ++v+t+ + ++L+ + s+    l+ L+ +G ++ +
      EGE26952.1  3 YKITQSASPVSTATITKELKLARSTTYNILQALSAKGVLHKV 44
                    8888999******************************98865 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.4e-05     0.022      22      54 ..      12      44 ..       5      46 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
                EEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLvaaGLverr 54
                ++ + ++++l+l +s++ +il+ L+a+G + ++
  EGE26952.1 12 VSTATITKELKLARSTTYNILQALSAKGVLHKV 44
                88999***********************88765 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.6e-05     0.026      18      60 ..       4      45 ..       1      48 [. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
                   HHHHHSS---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GG CS
  LexA_DNA_bind 18 sieetgypPsireiaralglkSpsaveehLkaLerKGyierdp 60
                   +i++   p s + i ++l+l+  s+  + L+aL+ KG++   p
     EGE26952.1  4 KITQSASPVSTATITKELKLA-RSTTYNILQALSAKGVLHKVP 45
                   688888999***********9.8889999*********98766 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.6e-05     0.059      19      45 ..      13      39 ..      12      43 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlkryreeG 45
                s+++I +eL   r+T y++l++  ++G
  EGE26952.1 13 STATITKELKLARSTTYNILQALSAKG 39
                7889*****************987777 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.7e-05      0.06      21      61 ..      11      50 ..       3      52 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-05
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETEEEEES- CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisrgrririld 61
                p++ + +   l l r+t+  il++L+ +g++ +   i+  d
  EGE26952.1 11 PVSTATITKELKLARSTTYNILQALSAKGVLHKVP-IITID 50
                78888899999********************9655.55555 PP

>> DUF4072  Domain of unknown function (DUF4072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   8.1e-05      0.13       3      26 ..       6      29 ..       5      37 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.1e-05
     DUF4072  3 iQspaPLsaahletLaaLagAsri 26
                 Qs +P+s+a + + ++La+++++
  EGE26952.1  6 TQSASPVSTATITKELKLARSTTY 29
                5********************998 PP

>> Ribosomal_S25  S25 ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.2e-05      0.12      53      89 ..       8      44 ..       3      48 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.2e-05
  Ribosomal_S25 53 kyklitpsvvserlkingslArraLreleekgliklv 89
                   +++ ++++++ + lk+  s   ++L+ l +kg++ +v
     EGE26952.1  8 SASPVSTATITKELKLARSTTYNILQALSAKGVLHKV 44
                   5667999**************************9988 PP

>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00011      0.18      25      61 ..       8      44 ..       2      51 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                EHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEE CS
         FUR 25 saeevykelkeedpeislaTVYrtLklleeaglvkel 61
                sa  v  +   ++ ++  +T Y++L+ l+  g+++++
  EGE26952.1  8 SASPVSTATITKELKLARSTTYNILQALSAKGVLHKV 44
                667778888899999*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 424.84
//
Query:       EGE26953.1  [L=498]
Description: succinate-semialdehyde dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-173  577.4   0.2     2e-173  577.2   0.2    1.0  1  Aldedh    Aldehyde dehydrogenase family
     0.0096   15.4   0.0      0.015   14.7   0.0    1.3  1  DUF1487   Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  577.2   0.2  2.2e-177    2e-173       1     460 [.      33     490 ..      33     492 .. 0.98

  Alignments for each domain:
  == domain 1  score: 577.2 bits;  conditional E-value: 2.2e-177
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlr 98 
                 wv ++s e i+v+nP+tg+v++++p+ ++++v +av+ A +a+++wa+++a+eRa++L+++adl+ ++ke+la ++t e+Gkp++e+++e+++a +++r
  EGE26953.1  33 WVGADSgEAIAVTNPFTGDVLGTIPSLSKQTVLNAVECADAAQESWANTTASERAKLLHAWADLIDTHKEDLALIMTYEQGKPITESQGEIDYANSFIR 131
                 888899566****************************************************************************************** PP

                 HHHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCH CS
      Aldedh  99 yyaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsev 196
                 ++a++ ++++g+v+ps +++ + +v ++P+Gv++aItPWNfP +++a+k+apalaaG+t+++KPa+etp+sal+l  l+++ag+Pkgvl++vtg+ s v
  EGE26953.1 132 WFADEGKRIYGDVIPStNQSLRYVVLKQPVGVCAAITPWNFPSAMIARKAAPALAAGCTMIIKPATETPFSALALGYLAKQAGIPKGVLQIVTGKSSVV 230
                 ****************667778888899*********************************************************************** PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakk 295
                 ge l+++p+++k+sftGstevgr +++++a+++k++++ElGG++p+iv++daDl+ka+e+++++ ++naGQ+C++a+r++vq+si def++k++++++ 
  EGE26953.1 231 GEVLTKDPRIHKLSFTGSTEVGRVLMEQCASTIKKLSMELGGNAPFIVFDDADLEKAAEGLIASKYRNAGQTCVCANRIYVQSSIKDEFLAKFKQKVEV 329
                 *************************************************************************************************** PP

                 --BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSS CS
      Aldedh 296 lkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdte 394
                 lkvg++ de+td+GPli++++l+kv++++++a ++ga+l++Gg    +++++   ++Ptv++++t++m++a+eEiFGP++++++f+de+e+i+ aNdt 
  EGE26953.1 330 LKVGNGADEATDIGPLINQQALKKVQALLDDALNKGATLITGG---VPHDASQLSFTPTVISDITDEMDLAHEEIFGPIAPIMTFEDEKEVIHRANDTI 425
                 *******************************************...8999************************************************* PP

                 EESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEE CS
      Aldedh 395 yGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevk 460
                 yGLaa+ +t++ +ra rv+e+le+G+v+ N+   +++ a pfgGvkqSg+Greg+k+g+eey+++k
  EGE26953.1 426 YGLAAYFYTQSHARAWRVSEALEYGMVGQNTGLLSTEVA-PFGGVKQSGFGREGSKYGIEEYITTK 490
                 ********************************9999999.***********************998 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.7e-06     0.015       8      61 ..     276     331 ..     273     389 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-06
     DUF1487   8 mvifedgDlnsalealveslkePfaegava..tvlveesirdefvervrsklkpls 61 
                 +++f+d+Dl++a+e l+ s     ++  v    + v+ si+def+ + ++k++ l+
  EGE26953.1 276 FIVFDDADLEKAAEGLIASKYRNAGQTCVCanRIYVQSSIKDEFLAKFKQKVEVLK 331
                 59************99998777777766652369*****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3777.83
//
Query:       EGE26954.1  [L=47]
Description: hypothetical protein EA1_03880 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 385.78
//
Query:       EGE26955.1  [L=416]
Description: NRAMP family Mn2+ and Fe2+ transporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00071   18.7  36.5    0.00071   18.7  36.5    1.9  1  Nramp       Natural resistance-associated macrophage protein
  ------ inclusion threshold ------
      0.044   13.9   1.4      0.044   13.9   1.4    2.5  2  DUF2684     Protein of unknown function (DUF2684)
      0.055   13.4   0.5       0.35   10.8   0.5    2.4  1  IPTL-CTERM  IPTL-CTERM motif
          2    8.6   4.1        1.8    8.7   0.3    2.5  2  OSTbeta     Organic solute transporter subunit beta protein


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7  36.5   1.6e-07   0.00071       3     346 ..      35     379 ..      33     396 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.6e-07
       Nramp   3 tdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllf.gipllvgvlitav 100
                 +++qaGa +G +L ++++l++++ + + +  +  +  Tg +l++   +  +  + +++++ ++ +ii t +  ++ a i  ++l  ++++l   +i++v
  EGE26955.1  35 ASTQAGALYGWQLAIMIILANFFKYPFYRFGTEYAYSTGSSLVAGYAKISRIYLWAFFVLCIISGIISTGAVALLCAVILGQILPwELSTLELSCIVMV 133
                 689****************************************99887776666666666677777777777777777777777779999999999999 PP

       Nramp 101 lvllllflekggyrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpg.keslllavgilGatvmphnlflhsslvqerkitidrsekeea 198
                  + +ll+   g yr l  l ++++++++++ +a +f++  + +++ ++++ P  p+   +l  +v+++G + +p  +   +s+   +ki++  + ++  
  EGE26955.1 134 TSGILLV--AGHYRLLDGLTKWIIALLTVATVAAVFIAAGKPSAISADFI-PASPWnLAALGFIVALMGWMPAPLEFSAVTSVWTAKKIRT--DYTN-- 225
                 9999999..***************************************99.*****9999****************************555..3333.. PP

       Nramp 199 lkyeriDtiialivaflinlailivaAavlysggkdv.....esledaaeaLepllGskaasvlFaigLlaaGlsStitgtlagqyvmegflglrislw 292
                   + ++D  ++ + + + +++ l++   v y +g+++     + + ++ ++ ++ +G ++a++l a   + +   ++it++     + ++ l+l +   
  EGE26955.1 226 RFQGFVDFNVGYFTSAVLAIFFLALGVFVQYGTGTEIamqggAYVPQLINMYTETIG-NWAKMLVATIAFLCMYGTVITCADGYGRTNSESLSLILTNS 323
                 668889999999999999999999998888866666655555777788888888999.69999999888888888888887766666666665555553 PP

       Nramp 293 lrrlitralafvpalivilligaele....lvkllvlsqvllslllPfalipllllts 346
                  ++  t+   +++++++i+++   +      + +l+  +++ ++++ ++ + l + + 
  EGE26955.1 324 TKA--TEKYVVIWTVFTIVAGYGLIAfflgQMAALLKFAMISAFVTAPIFAYLNYALV 379
                 333..55555555555555554444467443334444446666666666666655544 PP

>> DUF2684  Protein of unknown function (DUF2684)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.4   9.8e-06     0.044      21      75 ..      42      95 ..      33     103 .. 0.89
   2 ?   -1.9   0.7      0.86   3.8e+03      35      35 ..     399     399 ..     339     416 .] 0.62

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.8e-06
     DUF2684 21 ryGwiniwtailGqffalfplffesrlillktqlvivsdnadilriylllfsavl 75
                 yGw    + il +ff ++p +  ++     t    v+  a i riyl  f+++ 
  EGE26955.1 42 LYGWQLAIMIILANFF-KYPFYRFGTEYAYSTGSSLVAGYAKISRIYLWAFFVLC 95
                5**************9.69999999999**********************99653 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.86
     DUF2684  35 f 35 
                 f
  EGE26955.1 399 F 399
                 1 PP

>> IPTL-CTERM  IPTL-CTERM motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   7.9e-05      0.35       7      24 ..     184     201 ..     184     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.9e-05
  IPTL-CTERM   7 SeWGLiLLslLlaalglr 24 
                 S W L++L+ ++a++g++
  EGE26955.1 184 SPWNLAALGFIVALMGWM 201
                 89***************8 PP

>> OSTbeta  Organic solute transporter subunit beta protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.3    0.0004       1.8      33      55 ..     119     141 ..     117     146 .. 0.93
   2 ?   -0.1   0.4      0.21   9.6e+02      31      49 ..     183     199 ..     182     201 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0004
     OSTbeta  33 pWnysiLvLsavvvvisvvLLar 55 
                 pW+ s L Ls +v+v s +LL+ 
  EGE26955.1 119 PWELSTLELSCIVMVTSGILLVA 141
                 9*******************985 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.21
     OSTbeta  31 aspWnysiLvLsavvvvis 49 
                 aspWn +  +L ++v++++
  EGE26955.1 183 ASPWNLA--ALGFIVALMG 199
                 8****87..6677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1145  (0.063863); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3070.05
//
Query:       EGE26956.1  [L=359]
Description: peptide chain release factor 1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-71  240.9   1.3    1.8e-71  240.0   0.1    1.8  2  PCRF          PCRF domain
    3.4e-41  139.8   1.5    6.5e-41  138.9   1.5    1.5  1  RF-1          RF-1 domain
  ------ inclusion threshold ------
       0.14   12.4  11.6       0.17   12.2   0.0    3.1  3  ABC_tran_CTD  ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.0   0.1   3.1e-75   1.8e-71       2     193 .]      13     203 ..      12     203 .. 0.99
   2 ?   -0.8   0.1       0.2   1.2e+03      28      82 ..     265     290 ..     248     311 .. 0.45

  Alignments for each domain:
  == domain 1  score: 240.0 bits;  conditional E-value: 3.1e-75
                 HHHHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTSE CS
        PCRF   2 eeeleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakelleedeelaelaeeeleelekeleeleeelkklLlpkdendekn 100
                  +++ee+++ lsdp++++d++k+++ls e+++l+ei+++++++ +a++dl++a+ell +d+e++e+a +e+e +++++e+lee+l+ ++lpkd+nd+  
  EGE26956.1  13 VDRFEEVTALLSDPDTISDNKKFRELSMEHSDLSEITTTWQDFVQAEADLQTANELL-SDPEMKEMALDEIEVARANIETLEERLNVMMLPKDPNDKAT 110
                 5799*****************************************************.***************************************** PP

                 EEEEEEE-SSTHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS.SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF 101 aileiraGaGGdeaalfaedLlrmYtryaerkgwkvevldaseeeagGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                 a+leiraG+GGdeaa+f++dL+rmY++y +++gw+vevl+a+e e+gG+ke++++++g g+Yg+LkfEsG HRvqRvp+tesqgr+hTS++tV
  EGE26956.1 111 AFLEIRAGTGGDEAAIFSGDLFRMYQKYTQSQGWQVEVLSANEGEHGGYKEIIARVSGIGVYGRLKFESGAHRVQRVPATESQGRVHTSACTV 203
                 ********************************************************************************************9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.2
                 THHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GGGTHHHHHHHHHH CS
        PCRF  28 skelaeleeivealeeleealedleeakelleedeelaelaeeeleelekeleel 82 
                 +++ ++++ +v+++                             + ++++++++++
  EGE26956.1 265 ANKEKAMKMLVARI-----------------------------QQAKVQAQIDAT 290
                 22222222222222.............................233333333333 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   1.5   1.1e-44   6.5e-41       4     116 .]     214     321 ..     209     321 .. 0.92

  Alignments for each domain:
  == domain 1  score: 138.9 bits;  conditional E-value: 1.1e-44
                 CCE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S.--EC CS
        RF-1   4 eieidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgs.seki 101
                 ++ei+++dl+idt+rssGaGGQ+VN+t+saVr+th+ptg +v ecq+eRsq++N+ekA+++L a++++++++ + ++ + +r ++    +g+g+ se+i
  EGE26956.1 214 TVEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTG-VVAECQQERSQHANKEKAMKMLVARIQQAKVQAQIDATSDMR-RN---LVGSGDrSERI 307
                 399************************************.7*************************8887777777777777.55...79********* PP

                 EEEECGCTTEEEETT CS
        RF-1 102 Rtynkkpqsrvkdhr 116
                 Rtyn+ pq+r++dhr
  EGE26956.1 308 RTYNF-PQGRMTDHR 321
                 *****.********9 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.8e-05      0.17      12      54 ..       4      46 ..       2      53 .. 0.86
   2 ?    4.7   3.2     0.006        36      19      59 ..      57      98 ..      53     102 .. 0.80
   3 ?   -2.0   0.5      0.72   4.3e+03      32      52 ..     262     280 ..     254     291 .. 0.43

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.8e-05
  ABC_tran_CTD 12 eleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleele 54
                   l  +++++  + +e++a l+dp+  sd +k+ els e  +l 
    EGE26956.1  4 SLRHRLDQMVDRFEEVTALLSDPDTISDNKKFRELSMEHSDLS 46
                  5677888888999***********************9987765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.006
  ABC_tran_CTD 19 aLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLee 59
                  + E+++++ ++ l+dpe+ +   +++  + a +e+le+ L+ 
    EGE26956.1 57 QAEADLQTANELLSDPEMKEMAlDEIEVARANIETLEERLNV 98
                  679999***********7655578888888888888888775 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.72
  ABC_tran_CTD  32 adpelysdpeklaelsaelee 52 
                   ++ +  +++++++ l a++++
    EGE26956.1 262 SQHA--NKEKAMKMLVARIQQ 280
                   4444..333334444444322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2981.08
//
Query:       EGE26957.1  [L=285]
Description: nicotinate-nucleotide pyrophosphorylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-55  186.1   0.5    5.9e-55  185.6   0.5    1.2  1  QRPTase_C        Quinolinate phosphoribosyl transferase, C-te
    3.8e-25   87.7   0.0    7.6e-25   86.8   0.0    1.5  1  QRPTase_N        Quinolinate phosphoribosyl transferase, N-te
     0.0065   15.8   0.4       0.16   11.3   0.2    2.5  1  TMP-TENI         Thiamine monophosphate synthase
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.024   14.5   0.0    1.5  1  ATP-synt_ab_Xtn  ATPsynthase alpha/beta subunit N-term extens
      0.036   14.1   0.4        0.1   12.7   0.2    1.8  2  B12-binding      B12 binding domain


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.5   1.6e-58   5.9e-55       1     169 []     117     282 ..     117     282 .. 0.98

  Alignments for each domain:
  == domain 1  score: 185.6 bits;  conditional E-value: 1.6e-58
                 HHHHHHHHHHHHHCTSSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH CS
   QRPTase_C   1 iAtltarmveaaksakvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesleeleevlea 99 
                 iA++ta++v+++++++++i++TRkttP lr l+kyAv++GGg nhr+gL+d++likdnh++  g +++a+ ++++a+++ ++ievev++ ++lee+lea
  EGE26957.1 117 IASMTAKAVAQISHTQAKITCTRKTTPLLRNLQKYAVRAGGGCNHRMGLDDAILIKDNHLIYSGTLKQAIANAKAAAGHLIPIEVEVDTIAQLEEALEA 215
                 9************************************************************************************************** PP

                 T-SEEEEES--HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C 100 eadiimLDnfsveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                 +ad ++LDn++ ++lk+av      ++r ++e+SGg+t e ++++a+ gvd+i++g+lthsv   Di l+
  EGE26957.1 216 GADFVLLDNMDNDTLKHAVS---LCQGRAKTEASGGITFERLKTVADCGVDYIALGYLTHSVINHDIGLD 282
                 ********************...5678889*************************************986 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   2.1e-28   7.6e-25       2      89 .]      27     115 ..      26     115 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 2.1e-28
                 TT--HHHHHHGCTTSEEEEEEEESSSEEE-SHHHHHHHHHHH.TTTEEEESS-TT-EEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHH CS
   QRPTase_N   2 grgDlttealipeekkakaeiiakeegvvaGlevaeevfell.pglevellvkDGervekgdvlleieGnarallsaERvaLnllqrlS 89 
                 +rgD+t+ a+i+++ +a+  i++++ g++aG++ a+  fe + ++++++++++DG+++++g+vl+ ++Gn++all+aER+aLn+l++lS
  EGE26957.1  27 RRGDVTSAAVIAKNSTANLAIVSRDTGILAGMDLARLAFECIdKTINFSPNASDGDTIKSGQVLAYVSGNTQALLQAERTALNFLTHLS 115
                 58*************************************************************************************98 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   4.6e-05      0.16     138     177 ..     226     267 ..     159     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.6e-05
    TMP-TENI 138 gleglkelaeale..iPvvaiGGitlenvaevleagadgvav 177
                 + ++lk++++ ++    + a GGit e++++v+++g+d +a+
  EGE26957.1 226 DNDTLKHAVSLCQgrAKTEASGGITFERLKTVADCGVDYIAL 267
                 455666666666666788899******************996 PP

>> ATP-synt_ab_Xtn  ATPsynthase alpha/beta subunit N-term extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   6.7e-06     0.024      31     117 ..      69     159 ..      40     163 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.7e-06
                      SS-EEEEESS-TT-EEETT-EEEEEECTTCE...EEEEE--T.T-EEEEEEE--EEEE-TTSECEEECETT.ECEEEESSEEEETTS---E CS
  ATP-synt_ab_Xtn  31 ekkwefkpkvkvgdkvsggdilGtvqeteli...ehkimvpp.kvegkvkeiaeegeytvedtiaeveteegkekeltllqkwPvrkprpv 117
                      +k+ +f+p+++ gd++++g++l+ v+ ++       +  + + +    + +++ ++  ++++t a+++ +++++  l+ lqk+ vr    +
       EGE26957.1  69 DKTINFSPNASDGDTIKSGQVLAYVSGNTQAllqAERTALNFlTHLSGIASMTAKAVAQISHTQAKITCTRKTTPLLRNLQKYAVRAGGGC 159
                      57889********************987653234334444441333448888888999999999999999998999999999999986555 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1   3.7e+03      53      88 ..     123     157 ..     114     174 .. 0.64
   2 ?   12.7   0.2   2.8e-05       0.1      19     116 ..     185     273 ..     182     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
  B12-binding  53 dvvglSalltsqleavkelvellkrirprvkvvvGG 88 
                   +v+  ++ +++++++++++ ll+    +  v +GG
   EGE26957.1 123 KAVAQISHTQAKITCTRKTTPLLRNL-QKYAVRAGG 157
                  55555555777778888887777665.445566666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.8e-05
  B12-binding  19 vlaaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvel.lkrirprvkvvvGGahpsldpeetleaklgiddvvvgeged 115
                  ++a+a+ +ag+ +  ++++v++ + ++++ +  +d+v+l  + + +l ++  l++  +k++ +      GG   ++    t++   g+d++ +g+ ++
   EGE26957.1 185 AIANAKAAAGHLI-PIEVEVDTIAQLEEALEAGADFVLLDNMDNDTLKHAVSLCQGrAKTEAS------GG--ITFERLKTVAD-CGVDYIALGYLTH 272
                  7888888988644.4555555544445777788***********************6666644......99..56888887765.9999999999777 PP

  B12-binding 116 a 116
                   
   EGE26957.1 273 S 273
                  5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2100.36
//
Query:       EGE26958.1  [L=312]
Description: cytoplasmic membrane protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2342.29
//
Query:       EGE26959.1  [L=50]
Description: hypothetical protein EA1_03905 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 400.31
//
Query:       EGE26960.1  [L=370]
Description: quinolinate synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   9.6e-103  343.4   0.1   1.1e-102  343.2   0.1    1.0  1  NadA          Quinolinate synthetase A protein
  ------ inclusion threshold ------
        0.1   12.1   0.0       0.18   11.2   0.0    1.4  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> NadA  Quinolinate synthetase A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.2   0.1  1.3e-106  1.1e-102       2     299 .]      47     353 ..      46     353 .. 0.95

  Alignments for each domain:
  == domain 1  score: 343.2 bits;  conditional E-value: 1.3e-106
                 HHHHHHHHHTEEEEEETTS-HHHHHH-S....EEE-HHHHHHHCCC-SSSEEEEES-HHHHHHHHHHSTTSEEE-SSTT---HHHCT--HHHHHHHHHH CS
        NadA   2 eikelkkeknavilaHnYqedeiqeiad....fvGDSleLarkaaeteaevivfcGVhFMaetakiLspekkvllpdleagCsladmitaeeveelkee 96 
                 +ik+l  +k+avi+aH+Y++++iq++a     +vGDSle+a++ a+++a++++++GV+FM+e+akiLsp+k+vl+pdl+a+Csl+  ++ ee+++++++
  EGE26960.1  47 NIKDLLIQKDAVIIAHYYVDPDIQDLALatggCVGDSLEMAKFGAAHDAKTLLVAGVRFMGESAKILSPHKTVLMPDLQAECSLDLGCPIEEFSAFCDA 145
                 6999999*******************9877889****************************************************************** PP

                 STTS-EEEESSS-HHHHTT-SEEE-TTTHHHHHHHSS..-SEEEEES-HHHHHHHHHHH.SEEEEESSSS-GCGGG--CHHHHHHHHCSTT-EEEE-TT CS
        NadA  97 lpdaavvtYvNssaevKalsdivcTSsnavkvvealk..ekkilflPDqnLgryvakklgekkiilwkgaCsvHeefkaeeveelkeehpdakvlvHPE 193
                 +pd++vv+Y N+sa+vKa +d+v+TSs a ++v++l+  ++ki++ PD++Lg+y+++k+g+ ++ilw+g+C+vH+efk  e+e+lk+ehp+a  lvHPE
  EGE26960.1 146 HPDRTVVVYANTSAAVKARADWVVTSSVALEIVSHLHakGEKIIWGPDRHLGEYIRQKTGA-DMILWQGSCIVHNEFKSIELEQLKSEHPEAITLVHPE 243
                 *********************************9995469*******************98.6************************************ PP

                 S-HHHHHCSSEE--HHHHCCCCGTTSSSCEEEES-THHHHHHHHH-TTSEEE........ECS.SSS.STTGGG--HHHHHHHHHHT-S.B----HHHH CS
        NadA 194 ckeevveaadvvgSTsqiikavkeseakefiigTelglverlkkeapekefials...aeaae.eav.CetMkkitleklleaLeeleeeeikvdeeva 287
                 ++++vv++ dvvgSTs++++a+ ++++k+fi++T+lg+++++kk+ap+k+fia+    ++a++ +++ C++M+++ ++ +++aL+  +  ei++ e+++
  EGE26960.1 244 SPASVVAQGDVVGSTSKLLQAAIHRPEKTFIVATDLGILHEMKKHAPQKTFIAAPtagNSATCkSCAfCPWMAMNGVQGVYQALKYGTG-EIQLTESLM 341
                 ****************************************************8877643434433336******************999.********* PP

                 HHHHHHHHHHHH CS
        NadA 288 ekAkkalermle 299
                 ++A++al++m+e
  EGE26960.1 342 NDARHALDKMIE 353
                 **********96 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     2e-05      0.18     140     202 ..     133     195 ..      86     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2e-05
                   TC..HHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.EESSTTTTSSTTE CS
  AP_endonuc_2 140 gd..eelarlldavdspnvgvclDtgHlliaeedvddalraladrikhvHikDakgdlgagrdrh 202
                   g+  ee+ +++da +++ v v+ +t+ ++ a++d+  +     + ++h+H+k  k    +g drh
    EGE26960.1 133 GCpiEEFSAFCDAHPDRTVVVYANTSAAVKARADWVVTSSVALEIVSHLHAKGEKI--IWGPDRH 195
                   34669**********************************************87666..5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2591.71
//
Query:       EGE26961.1  [L=519]
Description: L-aspartate oxidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-91  305.7   0.7    7.3e-91  305.3   0.7    1.1  1  FAD_binding_2   FAD binding domain
    2.1e-06   27.6   1.5    5.2e-05   23.0   1.4    2.2  1  DAO             FAD dependent oxidoreductase
    9.9e-06   25.0   1.5    7.8e-05   22.1   0.6    2.6  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      0.001   19.1   0.2     0.0049   16.9   0.2    2.0  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
  ------ inclusion threshold ------
      0.024   13.7   0.7        0.7    8.9   0.0    2.1  2  GIDA            Glucose inhibited division protein A
      0.051   12.9   0.9        4.1    6.7   0.1    2.6  2  FAD_oxidored    FAD dependent oxidoreductase
      0.097   11.3   3.5       0.23   10.1   0.5    2.6  2  HI0933_like     HI0933-like protein


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.3   0.7   2.8e-94   7.3e-91       1     417 []       7     380 ..       7     380 .. 0.94

  Alignments for each domain:
  == domain 1  score: 305.3 bits;  conditional E-value: 2.8e-94
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    Dvi++GsGlA  + Al++  +  +v+++ k++    ++ ++qGgi+av       a + ds+++h+tdtl a+++l+d++  e +++++++a+++L
     EGE26961.1   7 DVIIVGSGLAAITTALSLP-KDCQVLLICKGEIADTSSRFAQGGIAAVI------APT-DSVQEHVTDTLIAGAGLCDPNTTEQIIHQGADAIAWL 94 
                    9***************885.5567*************************......444.9************************************ PP

                    HHTT----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT.EEEEESEEEEEEEECTT......EEEEEEEEETTTT CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkag.vdfqerteadeLivedg......rvtGavvenpesg 185
                     +l vpfs+ +++ +++++ Gg++++ r++h +ad+      tg+ ++a l ++++ ++ ++++er++++++++e +      ++ G+v+    ++
     EGE26961.1  95 SSLAVPFST-TKEGLHLTKEGGHNRR-RICH-VADH------TGQSVMACLWANMQTRPnIHVLERCFVTDILTELDvktkkvHCKGVVCL--INQ 179
                    *********.55579***********.****.****......****************9***************955566788********..999 PP

                    CEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TT CS
  FAD_binding_2 186 revrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkd 281
                    +  ++ a++vvlatgG g+           +++tt+++ +tGdg+a+a+rag+++ +   e+vqfhPt+ ++   ++ +Li+ea+rgeGg l++++
     EGE26961.1 180 QSKKYDADKVVLATGGLGQ----------IYQYTTAPEVCTGDGIAMAYRAGCRIVN--AEFVQFHPTGFDDDMAQT-ALISEAVRGEGGRLINAQ 262
                    999****************..........*************************999..9**********9444444.47**************** PP

                    SSBTH......GGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......EEEEEEE CS
  FAD_binding_2 282 GrrFm......nelasrdvvsrailekeiaeggseanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkvvpaqhy 371
                    G+rFm       ela+rdvv+r+i+ ke++++   + v+ld+sh    e +++++++i++ +          g+d++++pip       v+p qhy
     EGE26961.1 263 GERFMsnyderLELAPRDVVARSII-KEAQRTA--QGVFLDISH-QSDEFIKQHFPKIYQSCLA-K------GVDITKQPIP-------VTPVQHY 340
                    *************************.7776555..589******.9999********9999988.4......49********.......******* PP

                    ES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 372 tmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    ++gGv td +gr        + GLY+ Ge+a +g+hganrl++nsl
     EGE26961.1 341 FCGGVLTDVSGRS------DVVGLYCLGEMAYTGLHGANRLASNSL 380
                    *************......*************************98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   1.4     2e-08   5.2e-05       1      80 [.       7      76 ..       7     209 .. 0.52

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2e-08
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgidid 80
                dv+i+G+G + ++tA+ L +    V+l++kg +++  +S  ++g +++ ++  p    + + +       + l +  g+ +d
  EGE26961.1  7 DVIIVGSGLAAITTALSLPK-DcqVLLICKG-EIADTSSRFAQGGIAAVIA--PTD-SVQEHVT------DTLIAGAGL-CD 76
                9*****************66.457*******.66669999999****9886..322.1112222......444444333.33 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.6     3e-08   7.8e-05       1     109 [.       6     195 ..       6     216 .. 0.75
   2 ?   -1.3   0.0       0.4     1e+03     256     278 ..     343     365 ..     324     379 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3e-08
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEE...E..TTHCHHHCSHHHHCHHHHHHHHHHHHH.................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x..xxxxxxxxxxxxxxxxxxxxxxxxxxx.................................... RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlv...e..legtclnggcllskallgvaedaeias.................................... 57 
                  +dv+++G+G A++++al l +  ++v+l+   e  + +   + +      +++v ++++ ++                                    
   EGE26961.1   6 YDVIIVGSGLAAITTALSLPK-DCQVLLIckgEiaD-TSSRFAQG----GIAAVIAPTDSVQehvtdtliagaglcdpntteqiihqgadaiawlssl 97 
                  69*****************99.89999995441432.22222222....222232222222233336788889999999999999999999******* PP

                  ...........................................HHHHCHHHHCCCCHC...CT.CEEEEESCEEEEETEEEC...TCEEEEEESEEEE CS
                  ...........................................xxxxxxxxxxxxxxx...xx.xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx RF
  Pyr_redox_2  58 ...........................................evvkklnqgielllg...ee.vvkidpgkkkvklekkke...gdeekiaydklvl 105
                                                             +     + +i++l +   +   +++d + kkv+++  ++   ++ +k+++dk+vl
   EGE26961.1  98 avpfsttkeglhltkegghnrrrichvadhtgqsvmaclwanmQ----TRPNIHVLERcfvTDiLTELDVKTKKVHCKGVVClinQQSKKYDADKVVL 191
                  *************************9999999988888876430....3334555555444445778888999999999998***8888********* PP

                  ---E CS
                  xxxx RF
  Pyr_redox_2 106 AtGs 109
                  AtG+
   EGE26961.1 192 ATGG 195
                  ***7 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.4
                  TEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 256 ggivvdeflrtnvpgiyaiGDva 278
                  gg+++d ++r+ v g+y +G +a
   EGE26961.1 343 GGVLTDVSGRSDVVGLYCLGEMA 365
                  88999****************99 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   1.9e-06    0.0049       3      82 ..     431     501 ..     430     508 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.9e-06
                     HHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBE CS
  Succ_DH_flav_C   3 eLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHa 82 
                     +++++mq++ gv R++e+ +++++ l+   ++l+  ++t +s+         ++  nl  +A ++ak++l+R  S G+H+
      EGE26961.1 431 QIKQLMQQHLGVIRRQEDVAKTVELLAGALADLSTQNLTTQSQ---------IQKLNLTMCAYLVAKASLDRPHSIGCHY 501
                     6899***********************9999988555555444.........555678899******************8 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2     0.016        40       1      29 [.       7      39 ..       7      83 .. 0.79
   2 ?    8.9   0.0   0.00028       0.7     104     152 ..     139     196 ..     113     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.016
                CEEEE-SSHHHHHHHHHHHHTT--EEEE.....E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi.....t 29
                dvi++G G+A +  Al + +  ++vlLi     +
  EGE26961.1  7 DVIIVGSGLAAITTALSLPK-DCQVLLIckgeiA 39
                79**************9987.7999999443332 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00028
                 HHHTSTTEEEEES.-EEEEEECT.........TEEEEEEETTS-EEEECEEEE--TT-B CS
        GIDA 104 klenepnleiiee.eveelivee.........kkvkgvvtedgetikakavviatGtfl 152
                  +++ pn++++e+  v+++++e          k v  ++ ++ +++ a++vv+atG  l
  EGE26961.1 139 NMQTRPNIHVLERcFVTDILTELdvktkkvhcKGVVCLINQQSKKYDADKVVLATGG-L 196
                 567889999988735788866447888886666666667899999***********8.2 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0094        24       1      18 [.       7      24 ..       7      38 .. 0.80
   2 ?    6.7   0.1    0.0016       4.1      83     148 ..     127     199 ..      97     319 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0094
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaA 18
                  Dv++vG+g+a ++ A++ 
    EGE26961.1  7 DVIIVGSGLAAITTALSL 24
                  9**************974 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0016
  FAD_oxidored  83 tfepevakavleemlaeagvtvllntrlveveke.g...kr..iesvtveskegrktirAkvfiDATg.dGdl 148
                   +   +v++ ++ +m ++++++vl  ++++++ +e +   k+  +++v++  +++ k++ A+ ++ ATg  G++
    EGE26961.1 127 HTGQSVMACLWANMQTRPNIHVLERCFVTDILTElDvktKKvhCKGVVCLINQQSKKYDADKVVLATGgLGQI 199
                   677899**********************777776433333355999*99999999*****9999998625655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.5   9.1e-05      0.23     105     189 ..     126     226 ..       6     252 .. 0.63
   2 ?   -3.4   0.1       1.1   2.9e+03     289     346 ..     390     445 ..     386     472 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.1e-05
                  T.-CHHHHHHHHHHHHH.HT-EEE-S--EEEE.........ECETTE.EEEEE.TTEEEEESEEEE----S.......S-GGGT--SHHHHHHHHTT- CS
  HI0933_like 105 sdkaedivdallkelke.agvklrletevksv.........ekeedgkfrvktkseeeleadklvlAtGGl.......SiPklGstgkgyklaeqfgh 185
                  +++ ++++ +l ++++   ++++  ++ v+++         + + +g++ +  ++++++ adk+vlAtGGl        +P++  tg+g+ +a  +g 
   EGE26961.1 126 DHTGQSVMACLWANMQTrPNIHVLERCFVTDIlteldvktkKVHCKGVVCLINQQSKKYDADKVVLATGGLgqiyqytTAPEV-CTGDGIAMAYRAGC 222
                  44667777777666654257777777777777555554432333344344444699*************97222211123333.46677777777777 PP

                  -EEE CS
  HI0933_like 186 tivp 189
                  +iv+
   EGE26961.1 223 RIVN 226
                  7665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.1
                  TTSBHHHHHTTTS-HHHHHHHHHC..TTT-TTBGGG--HHHHHHHHHHHHSEEE--SE CS
  HI0933_like 289 skkslknalaellpkrlvevlleealieeedkklaqlskkelkklaealkaltvkvng 346
                    ksl++ la++ +++++  +  +++  ++d +la+    +++++ +++++    +++
   EGE26961.1 390 AAKSLQEPLAKWSNREVLPNWSVQTH--QKDINLASSIPLDVAQIKQLMQQHLGVIRR 445
                  55666666666666666666666633..355566666666666666666655444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3725.59
//
Query:       EGE26962.1  [L=324]
Description: TonB-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00027   21.3   0.3     0.0016   18.8   0.0    2.2  2  TonB_C          Gram-negative bacterial TonB protein C-termin
     0.0013   18.6  13.6     0.0016   18.3  13.6    1.1  1  TAF4            Transcription initiation factor TFIID compone
     0.0042   17.3   0.8       0.01   16.1   0.0    2.1  2  TonB_2          TonB C terminal
  ------ inclusion threshold ------
       0.41   11.0   7.7       0.65   10.4   7.7    1.2  1  Ly49            Ly49-like protein, N-terminal region
          1    7.8  11.6        1.2    7.6  11.6    1.1  1  Borrelia_P83    Borrelia P83/100 protein
        3.4    7.1   8.7        5.4    6.4   8.7    1.3  1  DUF2868         Protein of unknown function (DUF2868)


Domain annotation for each model (and alignments):
>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.51   1.5e+03      46      66 ..     201     221 ..     188     231 .. 0.51
   2 !   18.8   0.0   5.4e-07    0.0016      11      65 ..     248     301 ..     246     316 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.51
                 HHHHHHHTT-EE-TT--EEE. CS
      TonB_C  46 kaAleavrkwkfkpapkngkp 66 
                 +aA +a++k+    + + g++
  EGE26962.1 201 QAAANAAKKAGNHGGGQPGQN 221
                 344444444333333333444 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 5.4e-07
                 HHTEEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-EE-TT--EEE CS
      TonB_C  11 rrgieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwkfkpapkngk 65 
                 r  i+ t  v+f +d++G+++nv++  s+g+  Ld++ ++ + + ++ p+ ++ +
  EGE26962.1 248 RSDIDTTLQVSFRVDAEGKISNVNLNGSTGDAKLDRQIIRQIGRGRLHPFREG-N 301
                 67788899********************************9999999999775.3 PP

>> TAF4  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3  13.6   5.3e-07    0.0016     116     215 ..     134     224 ..     117     290 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.3e-07
        TAF4 116 rkqLrelaqkekeeeekrqakRieereglekaakdrskgedeeekklkaketakevqkeedekarhraANatAlaavgeprkKkyswmsagsg.sgggk 213
                 ++qL +++++e++e+e+ ++    er   e+ +++r +++  e+++l+++  a+e++++e + a  r A a A+a +    kK     + g+g +g+++
  EGE26962.1 134 QQQLAKIQEQERLEQERLEN----ERREQERLEQERLENARREQERLDNERRAREQAQKEAQVAAARRAAAQAAANAA---KKAG---NHGGGqPGQNQ 222
                 789**********9999999....455555555566688888888888887777777666666666665555555555...2222...22222122222 PP

        TAF4 214 sg 215
                 + 
  EGE26962.1 223 TV 224
                 22 PP

>> TonB_2  TonB C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       4.4   1.3e+04       9      21 ..     123     135 ..     123     143 .. 0.63
   2 !   16.1   0.0   3.4e-06      0.01      13      64 ..     242     291 ..     233     306 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.4
      TonB_2   9 rarikenwafpsq 21 
                 ++r++e w  ++q
  EGE26962.1 123 QQRLQEAWVAQQQ 135
                 6789999944433 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 3.4e-06
      TonB_2  13 kenwafpsqisgnleavveitidpdGeivsvrlvksSgneafDkavkrAiek 64 
                 ++    +++ + +++ +v++++d  G+i++v+l  s g++++D+ + r i +
  EGE26962.1 242 NNFC--SARSDIDTTLQVSFRVDAEGKISNVNLNGSTGDAKLDRQIIRQIGR 291
                 4444..3335778999******************************998864 PP

>> Ly49  Ly49-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   7.7   0.00022      0.65      33     100 ..     120     188 ..     116     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00022
                 XXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX..HH.HHHHHHHHHHHHHHHHHTTTSXSXX CS
        Ly49  33 sqekheleetl.nlsqnysimqndinlkeelLrnkslecsilkd.lleslkreqkrlysktktvlkslqn 100
                 + e+++l+e+    +q+   +q++  l++e L+n   e ++l++  le+  req+rl ++++   ++ q+
  EGE26962.1 120 ILEQQRLQEAWvAQQQQLAKIQEQERLEQERLENERREQERLEQeRLENARREQERLDNERRAR-EQAQK 188
                 5678888888879999***********************9987648***********9998774.44444 PP

>> Borrelia_P83  Borrelia P83/100 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  11.6    0.0004       1.2     217     311 ..     124     209 ..     110     298 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0004
  Borrelia_P83 217 vlkeel.dkkqkdadkakkkadtaednadkqrkevreklqeaknlpepadvsskkedkkvaeekkreiekaqkeikkkdeeakkakdakaedlkke 311
                   +  +e+   +q++++k +++    ++ ++ +r+e       +++l+++   + ++e++++  +++r  e+aqke++ ++   ++a  ++a +++k 
    EGE26962.1 124 QRLQEAwVAQQQQLAKIQEQERLEQERLENERRE-------QERLEQERLENARREQERLD-NERRAREQAQKEAQVAAA--RRAAAQAAANAAKK 209
                   2222220223334444444444444444444443.......33333333444556667776.777778888888876653..34444444444433 PP

>> DUF2868  Protein of unknown function (DUF2868)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   8.7    0.0018       5.4     176     251 ..      84     193 ..      72     216 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0018
     DUF2868 176 da.......aapePeaapepkaeaepepasep...................advlelelderla..........elelraglgvrvaasaadgGrld.d 237
                 ++         pePe++pep +e+epep +e                    +++++++++erl+          +++l+++   r++++ +   rld +
  EGE26962.1  84 TPevieppePIPEPEPLPEPIPEPEPEPEPEIdveaileqqrlqeawvaqqQQLAKIQEQERLEqerlenerreQERLEQE---RLENARREQERLDnE 179
                 4444533334456666666666666665555599**************999566666666666522222221122223332...444444444444444 PP

     DUF2868 238 rearsrvlaslaes 251
                 r ar+++ ++ + +
  EGE26962.1 180 RRAREQAQKEAQVA 193
                 44444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2583  (0.144068); expected 358.6 (0.02)
Passed bias filter:                      855  (0.0476881); expected 358.6 (0.02)
Passed Vit filter:                       171  (0.00953762); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 2316.98
//
Query:       EGE26963.1  [L=182]
Description: motA/TolQ/ExbB proton channel [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-32  110.4   2.1    6.5e-32  109.9   1.6    1.4  1  MotA_ExbB  MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
       0.11   12.9   0.0       0.11   12.9   0.0    2.8  3  Tad        Putative Flp pilus-assembly TadE/G-like
       0.21   10.3   1.3        5.5    5.6   0.1    2.0  2  DUF2207    Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   1.6   1.1e-35   6.5e-32      21     123 ..      65     167 ..      44     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 109.9 bits;  conditional E-value: 1.1e-35
                 HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSGGCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  21 gaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsadlakvapgiaeALiaTalGlvvAipavlaynklkrkve 119
                 ++++ ++++ l ++++r   +lekgl++l t++s+aP++GL+GTV+G+ +a+++++++g+a la+va+ ++eALi+T lGl+vAipav++yn+ +r ++
  EGE26963.1  65 DQRKMATEQKLLQQIARHRYELEKGLPVLGTTASIAPFIGLFGTVWGIFHALHSIGATGQAGLAQVAGPVGEALIMTGLGLAVAIPAVIFYNIATRINK 163
                 5677788999999*********************************************************************************99998 PP

                 HHHH CS
   MotA_ExbB 120 rlvl 123
                 + ++
  EGE26963.1 164 QAIH 167
                 8765 PP

>> Tad  Putative Flp pilus-assembly TadE/G-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.8e-05      0.11       9      39 ..      18      48 ..      14      49 .. 0.83
   2 ?   -1.3   0.2      0.48   2.9e+03       8      22 ..      96     110 ..      92     117 .. 0.74
   3 ?   -1.2   0.8      0.45   2.7e+03      15      22 ..     140     147 ..     135     154 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
         Tad  9 lallpllllvglavDvgravlartrlQnAAD 39
                +++l++l ++ ++v ++r+++ r+r  n +D
  EGE26963.1 18 FFVLLALSMISWVVGIMRVINSRRRTANIVD 48
                34556666*****************999988 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.48
         Tad   8 alallpllllvglav 22 
                 ++ + p+++l g ++
  EGE26963.1  96 TASIAPFIGLFGTVW 110
                 577888888888877 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.45
         Tad  15 lllvglav 22 
                 +  +glav
  EGE26963.1 140 MTGLGLAV 147
                 22333333 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1    0.0027        16     409     442 ..      14      47 ..       3      55 .. 0.84
   2 ?    5.6   0.1   0.00092       5.5     381     440 ..      94     164 ..      64     173 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0027
     DUF2207 409 lvfllilllillliaiivlllfsrllgrrteeGa 442
                 +  l+++ll+l +i+++v ++  +  +rrt++  
  EGE26963.1  14 SKTLFFVLLALSMISWVVGIMRVINSRRRTANIV 47 
                 677899***********************98765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.00092
     DUF2207 381 kklsalglgliilglilillallllvll...........lvfllilllillliaiivlllfsrllgrrtee 440
                  +   ++ +++++g++++++ +l  +++            v+ ++++++l+l+++i +++f+ +  r +++
  EGE26963.1  94 GTTASIAPFIGLFGTVWGIFHALHSIGAtgqaglaqvagPVGEALIMTGLGLAVAIPAVIFYNIATRINKQ 164
                 34444445555555555555554444449999999**9988999999999999999999998888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1376.04
//
Query:       EGE26964.1  [L=133]
Description: biopolymer transport protein ExbD/TolR [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-28   99.5   0.1    1.7e-28   99.4   0.1    1.0  1  ExbD          Biopolymer transport protein ExbD/TolR
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.18   11.9   0.0    1.4  1  Cupredoxin_1  Cupredoxin-like domain


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.1   1.9e-32   1.7e-28       4     127 ..      12     132 ..       9     133 .] 0.97

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 1.9e-32
        ExbD   4 esaeinltpmiDvvflLLifFlvtaklkkpeplevdlPsssstqkeveekelirisisadgsiyldkkavsveelaqklkerkakppdkltvaikadkd 102
                  + e+nl+p+iD++++L+i+Flvta++  p+ +++dlP+ s++  + +++e+++isi++ g iy+d++a++++el q++ e+ +  +++  + ++adk+
  EGE26964.1  12 GMNEMNLIPLIDIMLVLMIIFLVTATVLNPS-VPLDLPKTSASV-NDAPPEVLQISIDEAGGIYWDREALTLDELSQRFTEQVNAGKNP-QINLRADKE 107
                 5789***************************.************.7******************************************9.********* PP

        ExbD 103 vsygklvevldtlkkagiekvslvt 127
                  +y+++ +vl+++ kag+ k+++v 
  EGE26964.1 108 GKYDTVAQVLAEASKAGLGKIAFVS 132
                 **********************985 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     2e-05      0.18      64      94 ..      86     116 ..      25     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2e-05
  Cupredoxin_1  64 lgeekvlapgktttitiaplkpGeYeftcdm 94 
                    ++ ++++ gk+ +i+++++k+G+Y+ + + 
    EGE26964.1  86 QRFTEQVNAGKNPQINLRADKEGKYDTVAQV 116
                   356799********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1045.12
//
Query:       EGE26965.1  [L=212]
Description: intracellular septation protein A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-42  146.1  14.3    1.3e-42  146.0  14.3    1.0  1  IspA             Intracellular septation protein A
    0.00084   19.1   6.8      0.051   13.4   0.3    2.5  2  DUF2157          Predicted membrane protein (DUF2157)
  ------ inclusion threshold ------
      0.086   13.3   0.0      0.086   13.3   0.0    2.8  3  FeoB_associated  FeoB-associated Cys-rich membrane protein
      0.087   12.8   0.0       0.21   11.6   0.0    1.6  1  Orthoreo_P10     Orthoreovirus membrane fusion protein p10
       0.94    9.3   9.7        3.3    7.6   0.7    2.5  3  DUF2976          Protein of unknown function (DUF2976)


Domain annotation for each model (and alignments):
>> IspA  Intracellular septation protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0  14.3   3.6e-46   1.3e-42       1     175 [.       1     200 [.       1     201 [. 0.94

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 3.6e-46
        IspA   1 mkllldllPlilFfvayklag.....................illAtavlivatvlqiailklrtr.kvekmqlislvlvvvfGgltlllhdetFikwK 77 
                 mk+l+d++Pli+Ffv+yk+++                     il+At+ li+atv+ + +l++ +r ++ek+q+++l+++vvfGg+tl+l d  +i++K
  EGE26965.1   1 MKALFDYIPLIIFFVLYKTTEptdsthpilqligsagtdnnhILVATFGLIAATVIIYGYLFISQRfHLEKQQWFVLLMTVVFGGITLALSDAFYIMLK 99 
                 9*****************888888899999999999999999************************9******************************** PP

        IspA  78 ptvlyvlfalvLllslli..lkknllkrllgkeleLpdevWrkLnlawalfflvlavlnlvvaanlse.dtWvnfklFGllgltlvfiliqvillkkhl 173
                 + +++++fal Ll+s l+   k +++krl++  ++L++++W+ Lnlaw+ +f+v+a l++++a+ + e ++W +f  FG ++++++f+ ++++ l+k++
  EGE26965.1 100 AVLINGAFALGLLISPLFskDKSPIIKRLFEPVFHLTHQGWQYLNLAWVGMFTVMAGLHTFFAFIFAEgKYWGEFTAFGDMIVMFIFLGVMFFCLRKNI 198
                 *****************94445789*************************************88665438***************************99 PP

        IspA 174 ke 175
                 ++
  EGE26965.1 199 RK 200
                 86 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.3   1.4e-05     0.051      82     135 ..      14      85 ..       3      96 .. 0.74
   2 !    9.1   0.6   0.00028         1      36      85 ..     143     195 ..     126     207 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
     DUF2157  82 avlwrdr..................rvpprlgeallllaalllgaaialvgqifqlsgdaysllllwallll 135
                 +vl++++                  ++++ l   ++l+aa+++  ++  ++q f+l+ + + +ll+ +++  
  EGE26965.1  14 FVLYKTTeptdsthpilqligsagtDNNHILVATFGLIAATVIIYGYLFISQRFHLEKQQWFVLLMTVVFGG 85 
                 44544445666777777777777778899999************************9887776655554433 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00028
     DUF2157  36 eallvlGalllglGlilfvAanW...qglsrlvkfllllvllllslllgavlw 85 
                   l+++G++ +++Gl +f+A  +   + +++++ f+ ++v++++  ++ + l 
  EGE26965.1 143 LNLAWVGMFTVMAGLHTFFAFIFaegKYWGEFTAFGDMIVMFIFLGVMFFCLR 195
                 56899999999999999999998666567777777777777766655554444 PP

>> FeoB_associated  FeoB-associated Cys-rich membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.1   3.8e+03      11      19 ..      10      18 ..       8      20 .. 0.78
   2 ?   -2.0   0.8       1.4     5e+03      10      15 ..      52      57 ..      43      66 .. 0.48
   3 ?   13.3   0.0   2.4e-05     0.086       1      23 [.     178     200 ..     178     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
  FeoB_associated 11 aavafvirr 19
                     ++++fv+++
       EGE26965.1 10 LIIFFVLYK 18
                     688999997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
  FeoB_associated 10 aaavaf 15
                     aa v+ 
       EGE26965.1 52 AATVII 57
                     222222 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 2.4e-05
  FeoB_associated   1 atiIVgliiaaavafvirrlikk 23 
                      +++IV+ i +++++f++r++i+k
       EGE26965.1 178 GDMIVMFIFLGVMFFCLRKNIRK 200
                      589*******************9 PP

>> Orthoreo_P10  Orthoreovirus membrane fusion protein p10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.7e-05      0.21      40      72 ..     169     202 ..     162     210 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.7e-05
  Orthoreo_P10  40 aywpylaagggliviilllallycckak.vkada 72 
                    yw  ++a g +iv+ ++l++++ c  k +++d 
    EGE26965.1 169 KYWGEFTAFGDMIVMFIFLGVMFFCLRKnIRKDI 202
                   5**************9999987666554155554 PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.7   0.00091       3.3       5      77 ..      20      90 ..      16     103 .. 0.84
   2 ?   -2.2   0.0         1   3.6e+03      19      36 ..      97     114 ..      92     116 .. 0.74
   3 ?    6.5   1.8     0.002         7      33      80 ..     143     192 ..     138     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00091
     DUF2976  5 eaPssgekggdllelikgylkdgvillgLvlaavaflaVakaalkkfneisegkaewgkfgltlvvGvvllvv 77
                ++P++++    +l+li   + d   +l   ++ +a  ++++  l   +  + +k++w  + +t+v G + l++
  EGE26965.1 20 TEPTDST--HPILQLIGSAGTDNNHILVATFGLIAATVIIYGYLFISQRFHLEKQQWFVLLMTVVFGGITLAL 90
                5677666..88999999999999999999999999999999999999999****************9988764 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
     DUF2976  19 likgylkdgvillgLvla 36 
                 ++k++l +g+  lgL+++
  EGE26965.1  97 MLKAVLINGAFALGLLIS 114
                 567778888888888875 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.002
     DUF2976  33 LvlaavaflaVakaalkkfneisegkaewgkfgltl..vvGvvllvvviw 80 
                 L la v++++V+  + + f+ i  + + wg+f ++   +v ++ l v+ +
  EGE26965.1 143 LNLAWVGMFTVMAGLHTFFAFIFAEGKYWGEFTAFGdmIVMFIFLGVMFF 192
                 5678899***************99999******99622555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1050  (0.0585643); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1677.28
//
Query:       EGE26966.1  [L=820]
Description: ATP-dependent protease La [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-90  302.1   2.3    1.7e-90  302.1   2.3    1.6  2  Lon_C           Lon protease (S16) C-terminal proteolytic dom
    5.8e-23   81.9   1.4    8.2e-23   81.4   0.4    1.8  2  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
    8.6e-21   74.7   0.0    3.2e-20   72.9   0.0    2.0  1  AAA             ATPase family associated with various cellula
    6.6e-09   35.9   0.0    1.7e-08   34.5   0.0    1.8  1  AAA_5           AAA domain (dynein-related subfamily)
    9.6e-08   31.9   0.1    1.9e-07   30.9   0.1    1.5  1  ChlI            Subunit ChlI of Mg-chelatase
    6.5e-07   28.6   0.0    1.8e-06   27.1   0.0    1.7  1  AAA_PrkA        PrkA AAA domain
    0.00016   22.1   0.8    0.00081   19.8   0.0    2.5  3  AAA_16          AAA ATPase domain
     0.0013   18.5   0.1     0.0039   16.9   0.0    1.8  1  IstB_IS21       IstB-like ATP binding protein
     0.0019   17.7   0.6        1.6    8.1   0.1    3.4  3  SMC_N           RecF/RecN/SMC N terminal domain
     0.0033   17.6   0.0      0.011   15.9   0.0    1.9  1  AAA_2           AAA domain (Cdc48 subfamily)
      0.005   17.4   0.3      0.028   15.0   0.0    2.4  2  AAA_18          AAA domain
     0.0075   16.0   0.0      0.024   14.4   0.0    1.9  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
  ------ inclusion threshold ------
       0.02   14.9   0.3       0.12   12.4   0.0    2.4  2  AAA_14          AAA domain
      0.031   14.5   1.7        0.2   11.9   0.3    2.8  2  AAA_22          AAA domain
      0.049   12.5   0.1        4.7    5.9   0.0    2.2  2  Amnionless      Amnionless
      0.054   12.8   0.0       0.12   11.6   0.0    1.5  1  FYTT            Forty-two-three protein
      0.059   13.5   0.4       0.21   11.7   0.1    2.1  2  AAA_33          AAA domain
      0.062   13.2   0.0       0.18   11.7   0.0    1.8  1  RsgA_GTPase     RsgA GTPase
      0.081   12.8   0.0        2.2    8.2   0.0    2.4  2  NACHT           NACHT domain
        1.9    8.9   5.5        1.4    9.4   1.7    2.5  2  BNIP2           Bcl2-/adenovirus E1B nineteen kDa-interacting
          8    7.0   6.8        1.9    9.0   0.0    3.0  2  ABC_tran        ABC transporter
        9.4    6.7  11.8        1.7    9.1   7.6    1.9  1  DUF4200         Domain of unknown function (DUF4200)


Domain annotation for each model (and alignments):
>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       9.4   7.7e+03      67      89 ..     564     586 ..     559     587 .. 0.81
   2 !  302.1   2.3   2.1e-93   1.7e-90       2     204 ..     596     798 ..     595     799 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 9.4
                 HHHHHHHHHHHTSS-GGGSS-SS CS
       Lon_C  67 kesaqaalsyvrsraeelgidke 89 
                 +e  +++   vrs+ e++g++++
  EGE26966.1 564 REINKISRKAVRSQIEKYGVKPK 586
                 66778889999999999999875 PP

  == domain 2  score: 302.1 bits;  conditional E-value: 2.1e-93
                 E-TTTTHHHH-S-SS--SSSSS--BSSEEEEEEEETTEEEEEEEEEEEESS-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS-SS-TTT-EEEEEE CS
       Lon_C   2 vtakeleellGkkrfrseeaekedqvGvvtGlawtevGGdlltieavllpgkgklkltGklgdvmkesaqaalsyvrsraeelgidkevfekkdihihv 100
                 +t+++++++lG+k ++++ aek+ ++G +tGlawt+vGG+lltie+++++gkg+l  tG+lgdvmkes++aa+s+vr++ e++gi  e f+++d+hih+
  EGE26966.1 596 ITDDNISDYLGVKPYDYGLAEKDPEIGRITGLAWTSVGGELLTIESATMQGKGELVFTGSLGDVMKESIRAAMSVVRANGERFGITYEKFKNTDLHIHM 694
                 899************************************************************************************************ PP

                 -S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B--EESBHHHHH CS
       Lon_C 101 PeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleiilveevdevl 199
                 PeGa+PkdGPsaG++l+ta+vs++tg+++r+d+amtGe+tLrG+vl iGGlkekllaa+r+gik+v++Pk+ne+dl +iP +v+e+l i+ ve++devl
  EGE26966.1 695 PEGATPKDGPSAGIALTTAIVSAMTGIAIRADIAMTGEVTLRGKVLRIGGLKEKLLAAHRGGIKHVLIPKSNERDLIEIPGNVKEGLVIQSVETIDEVL 793
                 *************************************************************************************************** PP

                 HHHB- CS
       Lon_C 200 kaalv 204
                 ++alv
  EGE26966.1 794 AVALV 798
                 ***97 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.4     1e-25   8.2e-23       2     197 ..      20     208 ..      19     217 .. 0.80
   2 ?   -2.7   0.0       5.6   4.6e+03     136     167 ..     229     256 ..     207     263 .. 0.61

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 1e-25
  LON_substr_bdg   2 lpllpldnkvlfPgitlpltvsrpksiaaierlldk.dkpyigvflvkesqkdaide.esiselysvGtvarIvqil..rlddgrikvvlegleR 92 
                     lpl++ +++++fP + + l ++r++si+aie + ++ + +   ++ v  +qkd+  e  +i++l+++Gt++rIv  +   +dd+ +kv++egleR
      EGE26966.1  20 LPLIAVRDVIIFPQTQVALFIGREQSIKAIELAQKShEGK---LIAV--AQKDSLSEqIDIEDLHRYGTLCRIVSTMphDSDDKCLKVLIEGLER 109
                     9******************************999995555...8888..888887777899***************955555788********** PP

  LON_substr_bdg  93 vki...kklekekeegylvaeveiiedds..epedsdslqkelkalvqeiiekikkslarellkllleielllkyedlenpyrLadlvaailpfs 182
                     v+i   ++ +++ ++++  ae +  ++d     e++d ++++l +l++++ e        ++++ l     +  +  ++n  +L+++v + + ++
      EGE26966.1 110 VEIgriQNANDDTDDSF-IAEFTAANVDLnlSQEEADAQKSVLLELFSDYAESTL-----RNSREL-----IRVASGFDNLLELIYFVVTRTQLP 193
                     ***66433345445555.9999999887444555555555666666666666554.....444444.....5799******************** PP

  LON_substr_bdg 183 neekqelLeeldved 197
                      ++kq+lLe  d+ +
      EGE26966.1 194 LDKKQALLESGDAAE 208
                     *********999865 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.6
  LON_substr_bdg 136 eiiekikkslarellkllleielllkyedlen 167
                     +++++++    +++ ++ +e+ l++k++++++
      EGE26966.1 229 QLQDTVR----KQMENNQREYFLNEKMKAIKS 256
                     3666666....466666677778888888876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   3.9e-23   3.2e-20       1     127 [.     370     506 ..     370     510 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 3.9e-23
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 ++l+GppG+GKT+l +++a+ +g++f+++ +  ++++         y+g+++ ki + +++++ k+    +++DEid++a++        + + +++Ll
  EGE26966.1 370 LCLVGPPGVGKTSLGESIARATGRKFVRMALGGVRDEaeirghrrtYIGAMPGKIVQSLAKVEVKN--PLFLLDEIDKMAQDF-------RGDPASALL 459
                 58*********************************889************************9998..9**********7665.......9******** PP

                 HHHHHTTTS............SSTEEEEEEESSGGGSTHHHHSTTSSEE CS
         AAA  91 teldgvkkk............eskvivigatnrpdkldpallrgRfdrk 127
                 ++ld  ++k             s+v++i+++n++ +++pall +R++++
  EGE26966.1 460 EVLDPSQNKsfndhyldldldLSQVMFICTANSM-NIPPALL-DRMEVI 506
                 *********************888*********8.79*****.9**986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   2.1e-11   1.7e-08       2     138 .]     370     503 ..     369     503 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 2.1e-11
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHH....HHHHHHHHHSS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesev....lnsLlslleer 92 
                 ++LvGppG+gK++l e++a+a++r+++ ++l     e++++g+r++        ++++v++      +  +++lDE++++ ++     +++Ll +l+  
  EGE26966.1 370 LCLVGPPGVGKTSLGESIARATGRKFVRMALGGVRDEAEIRGHRRTY---IGAMPGKIVQSLAkvevKNPLFLLDEIDKMAQDFrgdpASALLEVLDPS 465
                 79*******************************************74...44445555555445556777899******99877322255666666666 PP

                 EEE..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5  93 rllleeggelvkaknddllerfrviatanpldrslnelspalrsRf 138
                 +     +++  + + d  l+++++i tan+ +     + pal++R+
  EGE26966.1 466 QNK---SFNDHYLDLDLDLSQVMFICTANSMN-----IPPALLDRM 503
                 555...55555555544466699999999998.....888888886 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.1   2.3e-10   1.9e-07       2     121 .]     640     766 ..     639     766 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.3e-10
        ChlI   2 evdvskglpkftivGlpdtavkeskervrsalkn.......sgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGs 93 
                 e  + +g+ ++  +G +   +kes +   s ++        +  +f+++ + + +     +k+G++  +++  +i++a+  i+ ++++ + Ge+ l G+
  EGE26966.1 640 ESATMQGKGELVFTGSLGDVMKESIRAAMSVVRAngerfgiTYEKFKNTDLHIHMPEGATPKDGPSAGIALTTAIVSAMTGIAIRADIAMTGEVTLRGK 738
                 6667788888888888888899998888888888666666556688999999*********************************************** PP

        ChlI  94 lrpvkgvlpialaakkegikkvivpken 121
                 + ++ g+ + +laa++ gik+v++pk+n
  EGE26966.1 739 VLRIGGLKEKLLAAHRGGIKHVLIPKSN 766
                 *************************998 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.2e-09   1.8e-06      43     111 ..     323     390 ..     299     401 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.2e-09
    AAA_PrkA  43 rlsrifsnetikkypafeedffGleetiekiveyfraaaqrleerkqilyllGPvggGksslverlkkl 111
                 + s++  n    k + +++d +Gl+++ ++i+ey+   ++  + +  il l+GP g Gk+sl e++ ++
  EGE26966.1 323 KASKVSINLDKAK-QTLDKDHYGLDDVKDRILEYLAVQSRVKQLKGPILCLVGPPGVGKTSLGESIARA 390
                 5566666655544.56778*********************************************99775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.6   4.6e+03     105     137 ..     137     169 ..      94     194 .. 0.58
   2 ?   -1.6   0.1       3.7     3e+03      79     106 ..     232     259 ..     148     309 .. 0.57
   3 !   19.8   0.0     1e-06   0.00081      10      52 ..     350     399 ..     342     483 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.6
      AAA_16 105 laavpelagaeasrllellkrll.allsrderpl 137
                 l+ ++e a+a++s llel+++ + + l++ +r l
  EGE26966.1 137 LNLSQEEADAQKSVLLELFSDYAeSTLRN-SREL 169
                 22455666666677777777777444444.4444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.7
      AAA_16  79 eellrqlldeaesaeleawrekleeala 106
                 +++ +q+++++++  l++  ++++++l+
  EGE26966.1 232 DTVRKQMENNQREYFLNEKMKAIKSELS 259
                 3333333333333333333333333333 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 1e-06
      AAA_16  10 eqLlsale...rvrsgrpelvllsGesGvGKsslvrellralekd....g 52 
                 +++l++l    rv++  ++++ l+G++GvGK+sl ++++ra  ++     
  EGE26966.1 350 DRILEYLAvqsRVKQLKGPILCLVGPPGVGKTSLGESIARATGRKfvrmA 399
                 566666654446666677*********************76666633330 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.8e-06    0.0039      17     135 ..     336     463 ..     324     470 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.8e-06
   IstB_IS21  17 ktledidfraarsldkrkvkeLatlsfiekken..ivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrd......gklaralkrl. 106
                 +tl d d+    +++ r+++ La  s +++ ++  ++l+Gp+GvGK+ l  ++++++ r+ +++    v+d  +e++ +rr       gk+ + l+++ 
  EGE26966.1 336 QTL-DKDHYGLDDVKDRILEYLAVQSRVKQLKGpiLCLVGPPGVGKTSLGESIARATGRKFVRMALGGVRDE-AEIRGHRRTyigampGKIVQSLAKVe 432
                 444.44444555889999999999999997665338899***************999888888777776664.33444443222111134433333331 PP

   IstB_IS21 107 lkvdllilDdlg..llpldqaeaellfevie 135
                 +k  l +lD++    +++  + a+ l+ev++
  EGE26966.1 433 VKNPLFLLDEIDkmAQDFRGDPASALLEVLD 463
                 3345677777652235566666777777766 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1     0.002       1.6      35     125 ..     174     260 ..     152     265 .. 0.82
   2 ?    4.4   0.0     0.026        21      22      46 ..     365     389 ..     354     399 .. 0.79
   3 ?    0.7   0.0      0.37     3e+02     158     169 ..     434     445 ..     425     466 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.002
                 SSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEE.E-HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
       SMC_N  35 SGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingke.vtkkevse 125
                 SG  nll+ i Fv      ++l  +k ++l+ +    a+  +  ++ +f+n++ + +ie++   + r+ +++++ ey++n+k  + k+e+s+
  EGE26966.1 174 SGFDNLLELIYFVVT---RTQLPLDKKQALLES--GDAAEYFKVLSEYFTNTKTEHSIESQLQDTVRKQMENNQREYFLNEKMkAIKSELSD 260
                 788899999999999...347999999999997..5555556667889999999999999998888999999999*****985144466655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.026
                 TTSSEEEEEESTTSSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  22 fsksftaivGpNGSGKsnlldAilF 46 
                 ++  + ++vGp G GK++l ++i  
  EGE26966.1 365 LKGPILCLVGPPGVGKTSLGESIAR 389
                 55567799**************975 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.37
                 --SEEEECTTTT CS
                 xxxxxxxxxxxx RF
       SMC_N 158 paplyllDeida 169
                 ++pl+llDeid 
  EGE26966.1 434 KNPLFLLDEIDK 445
                 57********96 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-05     0.011       8     131 ..     372     494 ..     367     536 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-05
                 EE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS......EEEEETGGG-------------HHHHHHHH CS
       AAA_2   8 llgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG......ivllDEidKihpkessgadvSregVqrdLL 100
                 l+gp gvGkt l +++a+       +k++r+    +  e e++      iga pg + +            llDEidK ++      d  r +   +LL
  EGE26966.1 372 LVGPPGVGKTSLGESIARATG----RKFVRMALGGVRDEAEIRGHRRTYIGAMPGKIVQSLAKvevknpLFLLDEIDKMAQ------D-FRGDPASALL 459
                 789***************998....68888888888877779999999999999987665555678889************......3.4557899*** PP

                 HHHH--EE-...----.--EE-TT-EEEEEE--TT CS
       AAA_2 101 qileggtlt...dkqg.rkvdtknilfImtgafgs 131
                  +l+ ++ +   d++     d ++++fI+t +   
  EGE26966.1 460 EVLDPSQNKsfnDHYLdLDLDLSQVMFICTANSMN 494
                 *****997766666655889999*******99765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       2.9   2.4e+03      25      56 ..     264     293 ..     213     337 .. 0.56
   2 !   15.0   0.0   3.5e-05     0.028       2      32 ..     371     399 ..     370     449 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.9
      AAA_18  25 gvnlrdvakenglllevdpealdeskrldedk 56 
                 g    dv  en+l + + p+  d  k+++ ++
  EGE26966.1 264 GADDDDVELENRLKEADLPD--DVRKKAESEF 293
                 44444444444444444444..4444444333 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.5e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgfgvnlrdva 32 
                 +l G+pGvGKt+l++ +++ +  g++   +a
  EGE26966.1 371 CLVGPPGVGKTSLGESIARAT--GRKFVRMA 399
                 799***************998..55555444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.9e-05     0.024       8      61 ..     341     395 ..     335     451 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.9e-05
      RuvB_N   8 eyigqekvkeklkifieaakkreeald..hvllyGpPGlGkttlakiiakelgvkl 61 
                 ++ g ++vk+++  ++ a ++r ++l    + l+GpPG+Gkt+l + ia+  g k+
  EGE26966.1 341 DHYGLDDVKDRILEYL-AVQSRVKQLKgpILCLVGPPGVGKTSLGESIARATGRKF 395
                 6677777887765544.44455555441145689***************9988765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.12       2      77 ..     367     447 ..     366     480 .. 0.76
   2 ?   -2.2   0.0       4.8   3.9e+03      86     111 ..     642     666 ..     637     673 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla.dpe.....kllelileklke..ekktylflDEiqevp 77 
                 ++il+++G+  vGKT l + +++      ++++ ++l   rd+++    +      ++  i ++l +   k+ +++lDEi ++ 
  EGE26966.1 367 GPILCLVGPPGVGKTSLGESIARATG---RKFVRMALGGVRDEAEIrGHRrtyigAMPGKIVQSLAKveVKNPLFLLDEIDKMA 447
                 5799******************9999...9******99988844321121334554444444442224458899******9874 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.8
      AAA_14  86 lvdegknldvivtGSnskllskeiat 111
                    +g ++++++tGS+  ++++ i+ 
  EGE26966.1 642 ATMQG-KGELVFTGSLGDVMKESIRA 666
                 55566.7899*****99888877765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       3.1   2.6e+03      44      90 ..     169     238 ..     138     248 .. 0.61
   2 ?   11.9   0.3   0.00025       0.2       6      39 ..     368     392 ..     364     471 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.1
      AAA_22  44 fvtlpsst.sskdllrellralglelka......................erlsseellealeqalrara 90 
                 ++ ++s+  ++ +l   ++  ++l+l++                      ++++++ + ++l++ +r+++
  EGE26966.1 169 LIRVASGFdNLLELIYFVVTRTQLPLDKkqallesgdaaeyfkvlseyftNTKTEHSIESQLQDTVRKQM 238
                 4444444446666777777777777777667776666666666666667555555555577777777765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00025
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeer 39 
                  il+++G++G+GKT l + +++           +
  EGE26966.1 368 PILCLVGPPGVGKTSLGESIARAT---------G 392
                 689*************99998876.........4 PP

>> Amnionless  Amnionless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0057       4.7       5      54 ..       3      54 ..       2      66 .. 0.84
   2 ?    4.0   0.0     0.021        18     290     361 ..     649     716 ..     632     744 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0057
  Amnionless  5 ipntnfenasnWdk.nrvPca..gdtvvfpakkkvsvlvqeslsvsellLPld 54
                +pnt ++na+n ++ +++P +  +d+++fp +++v++++  ++s++ + L ++
  EGE26966.1  3 TPNTTYDNANNHHNlQQLPLIavRDVIIFP-QTQVALFIGREQSIKAIELAQK 54
                59**********999****75337999997.6789999*******99999764 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.021
  Amnionless 290 qivildpekgsyaerlaqelladiaehgealgilsaeletsgasssdssaag.apgesaglvlgivfglvlll 361
                 ++v +  + g++ +++++++++ ++++ge++gi+  +++    + +  + a  ++g sag +l     +++++
  EGE26966.1 649 ELVFTG-SLGDVMKESIRAAMSVVRANGERFGITYEKFKNTDLHIHMPEGATpKDGPSAGIALT----TAIVS 716
                 566665.67889999************************9999998888555533333333332....22222 PP

>> FYTT  Forty-two-three protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.12       8      75 ..     530     595 ..     522     632 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
        FYTT   8 pakarsaenldkidmslddiiklnkkeqrkrnfpklnkrikqsaarqlkkrg.rrGvqqrkGagknsla 75 
                 ++++ ++++ld  d +l  ii+   ke       +l++ i++ +++ ++ +  ++Gv+++kG+  +sl+
  EGE26966.1 530 EQNGLKPNELDITDDALTSIIRHYTKEAGV---RNLEREINKISRKAVRSQIeKYGVKPKKGVNIDSLT 595
                 556778999******************995...5689999999999**9999999*******9988876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.7   3.8e+03      30      43 ..     231     244 ..     229     261 .. 0.81
   2 ?   11.7   0.1   0.00026      0.21       2      27 ..     370     397 ..     369     423 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.7
      AAA_33  30 sdtlrrrlfgtdqq 43 
                 +dt+r+++++++++
  EGE26966.1 231 QDTVRKQMENNQRE 244
                 799******99876 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00026
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avl 27 
                 + lvG+pG+GK+ l e++++++g  +v+
  EGE26966.1 370 LCLVGPPGVGKTSLGESIARATGrkFVR 397
                 568*****************99977665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022      0.18      88     122 ..     356     390 ..     321     413 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
                  TTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  88 egleelkellkdktsvlvGqSGvGKStLinallpe 122
                   ++++  ++lk+ + +lvG+ GvGK++L ++++  
   EGE26966.1 356 LAVQSRVKQLKGPILCLVGPPGVGKTSLGESIARA 390
                  55666678999*****************8888765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0027       2.2       3      23 ..     370     390 ..     368     396 .. 0.88
   2 ?    1.9   0.0      0.23   1.9e+02      83     109 ..     436     459 ..     408     475 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0027
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 ++l G++G+GKT L +++a+a
  EGE26966.1 370 LCLVGPPGVGKTSLGESIARA 390
                 799***********9999987 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.23
                 EEEEEE-STT-SS-TCH.........H CS
       NACHT  83 lLlilDglDelvtdlgqkekqpvrtlL 109
                  L++lD +D++++d++     p+  lL
  EGE26966.1 436 PLFLLDEIDKMAQDFRG---DPASALL 459
                 47***********9987...3333333 PP

>> BNIP2  Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       1.3   1.1e+03      33      73 ..      66     139 ..      26     177 .. 0.58
   2 ?    9.4   1.7    0.0017       1.4      39      92 ..     251     303 ..     189     333 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.3
       BNIP2  33 ddissledsldinvDdl......................................etpsdedslevpetlkdleweddl 73 
                  d+ s      i+++dl                                      +  +d+d+  + e +  ++++ +l
  EGE26966.1  66 KDSLSE----QIDIEDLhrygtlcrivstmphdsddkclkvlieglerveigriqNANDDTDDSFIAEFTA-ANVDLNL 139
                 333332....4666777777777777776666666666666666666666666665555555544444333.3333333 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0017
       BNIP2  39 edsldinvDdletpsdedslevpetlkdleweddlpakeaeaasesaeslpqys 92 
                  + +  ++ dl++  d+d++e+ + lk++++ dd+++k++++ + + +++p+ s
  EGE26966.1 251 MKAIKSELSDLNDGADDDDVELENRLKEADLPDDVRKKAESEFK-KLKQMPASS 303
                 34567889999***********************9855543333.334444333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.1         3   2.4e+03      52     102 ..     229     289 ..      44     310 .. 0.71
   2 ?    9.0   0.0    0.0024       1.9      10      34 ..     366     390 ..     358     444 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3
                 B-HHHCCHCEEEE-SS--S-TTSB.HHHH..........HHHTCHHHHHHHSTTGGTTCBGE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxx..........xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  52 qeleslrkeigvlpqepqlfpelt.vren..........esdeeiekalsklglkelkdtvv 102
                 q    +rk+++  + e +l+++++ ++ +          ++d+e+e+ l++ +l+++  +++
  EGE26966.1 229 QLQDTVRKQMENNQREYFLNEKMKaIK-SelsdlndgadDDDVELENRLKEADLPDDVRKKA 289
                 222223333333333333333333222.1355555555555555666666666665555555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0024
                 TTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagl 34 
                 +g ++ +vG+ G GK++L + +a+ 
  EGE26966.1 366 KGPILCLVGPPGVGKTSLGESIARA 390
                 688999************9999876 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   7.6     0.002       1.7      11      87 ..     222     298 ..     219     303 .. 0.96

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.002
     DUF4200  11 vqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklka 87 
                 ++ ++e + ++  r++ +++qre  l++k + ++ +l  ++    + d + ++ lk+a+   + +k+ e+e kklk+
  EGE26966.1 222 TEHSIESQLQDTVRKQMENNQREYFLNEKMKAIKSELSDLNDGADDDDVELENRLKEADLPDDVRKKAESEFKKLKQ 298
                 67899**********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1187  (0.0662056); expected 358.6 (0.02)
Passed bias filter:                      714  (0.0398237); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.41
# Mc/sec: 5933.19
//
Query:       EGE26967.1  [L=31]
Description: hypothetical protein EA1_03945 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 268.06
//
Query:       EGE26968.1  [L=470]
Description: Na+/H+ antiporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-71  241.5  30.7    1.2e-71  241.5  30.7    2.3  2  Na_H_antiporter  Na+/H+ antiporter family
    1.2e-32  111.9  11.1    1.2e-32  111.9  11.1    4.2  4  Na_H_antiport_2  Na+-H+ antiporter family
    0.00086   18.2  51.5      0.027   13.3  28.9    2.5  2  DctM             Tripartite ATP-independent periplasmic trans
  ------ inclusion threshold ------
       0.77    9.7   5.5       0.15   12.0   0.5    2.4  2  SLATT_1          SMODS and SLOG-associating 2TM effector doma


Domain annotation for each model (and alignments):
>> Na_H_antiporter  Na+/H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   8.7       1.2   5.4e+03      85     143 ..      41     101 ..      25     146 .. 0.63
   2 !  241.5  30.7   2.6e-75   1.2e-71       2     303 .]     182     464 ..     181     464 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.2
  Na_H_antiporter  85 piavliiltlskmpytgalalvaivkafivalafqn..tdvatalvvgalaglivatllel 143
                       ++v+++l+l ++ ++ +l+++a+v ++   + + +  t++ ++++ ga+++l +a+l+++
       EGE26968.1  41 AVIVMVGLSLVRVHVVLSLVVGALVGGLMAGMSVADtlTSFQDGIKNGAQIALSYAMLGAF 101
                      4555555555555555555555555333333333221134566666666666666666665 PP

  == domain 2  score: 241.5 bits;  conditional E-value: 2.6e-75
  Na_H_antiporter   2 avfgdkssplsdtvgliagilktdlieeiaalgmlvqsipanvysifallvvglvvlllrdigamlraeaeareleekeltklpiavliiltls 95 
                      ++fg++ ++++ ++g++ ++l+++++++i+++gm+ +   + ++  ++++++g++++ll++i+ ++r+   +r+++ek+++ +++a + + tl+
       EGE26968.1 182 LTFGLVNTYMFIPYGFGDIFLNQIILKNINEAGMITNN--ISMMQTMMIPALGMLIGLLIAIFVTYRK---PRHYQEKVVA-VSYASIQVGTLN 269
                      79****************************99999999..999*************************...**********.8******99998 PP

  Na_H_antiporter  96 kmpytgalalvaivkafivalafqntdvatalvvgalaglivatllelaslseidkllnrGiksmlgaililllAwgiggvlealgvteslvss 189
                         +++a+a  aiv+af+ +l+        +l++g+l+g+++++++++++++++++++n+Gik+m+++++i+++A g+++v++a+g++++lv++
       EGE26968.1 270 ---IVVAMA--AIVAAFVAQLMTD------SLLIGSLVGFAIFMATGIVKWRDANEVFNDGIKMMAMIGFIMICAQGFAEVMKATGQINALVDG 352
                      ...444444..6778999999665......5999************************************************************ PP

  Na_H_antiporter 190 lakgv.vskgllplilflvallvafatGtswgtigIilpiavplaaklgisllalvraveaggtlgdhlsPisdttilsstglnad.hidhvsy 281
                       +  + ++k+l+++ ++lv+l+v+ ++G+s++t++Ii++i+vpl++++g+s +a+v+++ ++g+lgd++sP+sd+t+++++glnad ++dh+ +
       EGE26968.1 353 AVVLFgDNKMLAAVSMLLVGLVVTLGIGSSFSTVPIIATIYVPLCMAMGFSVPATVALIATAGVLGDAGSPASDSTLGPTMGLNADgQHDHIHD 446
                      ********************************************************************************************** PP

  Na_H_antiporter 282 tqlpyallvapitailllvfGi 303
                      +++p++++++    i+l++fG+
       EGE26968.1 447 SVIPTFIHYN----IPLIIFGW 464
                      **********....*******9 PP

>> Na_H_antiport_2  Na+-H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9  11.1   2.6e-36   1.2e-32       1      87 [.      36     122 ..      36     123 .. 0.98
   2 ?    0.5   3.5      0.15   6.8e+02      52      84 ..     252     286 ..     214     290 .. 0.68
   3 ?    2.8  10.7     0.028   1.3e+02      28      84 ..     276     354 ..     255     358 .. 0.66
   4 ?   -1.7   1.1      0.76   3.4e+03      26      43 ..     366     383 ..     362     419 .. 0.54

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 2.6e-36
  Na_H_antiport_2   1 NavviavlvmlvLsllrvnvvlallisalvgGlvgglsleetieafasGlgggaevAlsyallGafAvaisksgltdllvkkvikll 87 
                      Nav++av+vm+ Lsl+rv+vvl+l+++alvgGl++g+s+ +t++ f++G+++ga++Alsya+lGafA+ai++sgl+++l++k+i++l
       EGE26968.1  36 NAVLLAVIVMVGLSLVRVHVVLSLVVGALVGGLMAGMSVADTLTSFQDGIKNGAQIALSYAMLGAFAMAIAHSGLPQILADKLIARL 122
                      9**********************************************************************************9876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.15
  Na_H_antiport_2  52 ggaevAlsyal..lGafAvaisksgltdllvkkvi 84 
                      ++  vA+sya   +G++ ++++ + +  ++v +++
       EGE26968.1 252 QEKVVAVSYASiqVGTLNIVVAMAAIVAAFVAQLM 286
                      55668888875226888888888888888777665 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.028
  Na_H_antiport_2  28 alvgGlvgglsleet......................ieafasGlgggaevAlsyallGafAvaisksgltdllvkkvi 84 
                      a+v+ +v+ l+ +                         e+f++G++ +a + +  +   +fA ++  +g  ++lv+ ++
       EGE26968.1 276 AIVAAFVAQLMTDSLligslvgfaifmatgivkwrdaNEVFNDGIKMMAMIGFIMICAQGFAEVMKATGQINALVDGAV 354
                      222222222222222222233333333344555555599*********************************9998766 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.76
  Na_H_antiport_2  26 isalvgGlvgglsleeti 43 
                      +s l+ Glv  l++   +
       EGE26968.1 366 VSMLLVGLVVTLGIGSSF 383
                      455555555555555442 PP

>> DctM  Tripartite ATP-independent periplasmic transporter, DctM component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6  23.1    0.0027        12     243     410 ..      53     241 ..      30     244 .. 0.73
   2 !   13.3  28.9   6.1e-06     0.027     170     370 ..     222     420 ..     205     425 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0027
        DctM 243 vavvyalviallv...yrrltleevaaallstakttaavlfilaaagifaglltltgvplklselllslsg......gkllfLilvnllvl.vlGmfld 331
                 v vv++lv+++lv      +++++++ ++ +++k  a++++  a  g+fa++++++g+p+ l++ l++  +      g l fL+  +l+++ ++   + 
  EGE26968.1  53 VHVVLSLVVGALVgglMAGMSVADTLTSFQDGIKNGAQIALSYAMLGAFAMAIAHSGLPQILADKLIARLQyadgtgG-LKFLLFFILIIMaIMSQNIV 150
                 567888888888877789999999999************************************999876654555532.33443333333325555555 PP

        DctM 332 t..taaiiilvpilaPaaaklgidpihfgvvivlnlsiglitPPvGlalfvassia............kvsveeivkalvPflvvlvvalvli 410
                 +  +a i ++vp l+ ++++l +d+ ++  ++++ l+  ++  P G+    + +i             +  ++ +  +++P l +l+ +l+ i
  EGE26968.1 151 PihIAFIPLIVPPLLSVMNRLHLDRRAITCILTFGLVNTYMFIPYGFGDIFLNQIIlknineagmitnN--ISMMQTMMIPALGMLIGLLIAI 241
                 401555667******************999999999999999999997666666666888777776433..3333344566666666666655 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 6.1e-06
        DctM 170 lfaaaiipglllavglllavaiaak.kenlrsktkaelkrlgqalkeaipalllpliiligillgiftpteagavavvyalviallvyrrltleevaaa 267
                 ++   +ip+l +++gll+a+ + ++  + +++k  a +    q+   +i  ++++  i+ ++++ ++t     +  v  a+++a+     +++++  ++
  EGE26968.1 222 MMQTMMIPALGMLIGLLIAIFVTYRkPRHYQEKVVAVSYASIQVGTLNI--VVAMAAIVAAFVAQLMTDSLLIGSLVGFAIFMATG---IVKWRDANEV 315
                 4555679************999999444455544444444444444444..67777788888899999987666666666666666...899******* PP

        DctM 268 llstakttaavlfilaaagifaglltltgvplklselllslsggk.llfLilvnllvlvlGmfl.dttaaiiilvpilaPaaaklgidpihfgvvivln 364
                 + +++k+ a++ fi++ a+ fa ++  tg   +l + ++ l g++ +l  + ++l+ lv+ +++ + ++++ i+++i +P+ +++g+   +   +i ++
  EGE26968.1 316 FNDGIKMMAMIGFIMICAQGFAEVMKATGQINALVDGAVVLFGDNkMLAAVSMLLVGLVVTLGIgSSFSTVPIIATIYVPLCMAMGFSVPATVALIATA 414
                 **************************9986666655555555555154444455555788888745789******************988877788888 PP

        DctM 365 lsigli 370
                 +++g++
  EGE26968.1 415 GVLGDA 420
                 887765 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.5      0.87   3.9e+03      38      66 ..      37      65 ..      27      80 .. 0.56
   2 ?   12.0   0.5   3.3e-05      0.15      11      72 ..     249     313 ..     244     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.87
     SLATT_1 38 alllaalrafgelsvdlvgvlaavaaall 66
                a+lla++ ++g   v +  vl+ v++al+
  EGE26968.1 37 AVLLAVIVMVGLSLVRVHVVLSLVVGALV 65
                44444444444333344444555555443 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.3e-05
     SLATT_1  11 dwYrkkaeeneraakrwrlllillellalllaalrafgelsv...dlvgvlaavaaallaWlelk 72 
                 ++Y++k+ + + a+ ++ +l i++ ++a+++a + ++ + s+   +lvg+++ +a+ ++ W +++
  EGE26968.1 249 RHYQEKVVAVSYASIQVGTLNIVVAMAAIVAAFVAQLMTDSLligSLVGFAIFMATGIVKWRDAN 313
                 6899999999999999999999999999999999854444444599***************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 3458.27
//
Query:       EGE26969.1  [L=617]
Description: glutathione-regulated potassium-efflux system protein KefC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-65  218.9  52.7    1.2e-64  218.5  52.7    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
    2.3e-22   79.4   0.1    4.5e-22   78.5   0.1    1.5  1  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.5  52.7   1.3e-68   1.2e-64       3     377 ..      15     376 ..      12     380 .. 0.94

  Alignments for each domain:
  == domain 1  score: 218.5 bits;  conditional E-value: 1.3e-68
                     HHHHHHHHHHH.HHHHTTSXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   3 llillallvgl.larrlklpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGl 96 
                     +l+  a+++ + l+r+++l++++g+++ Gl++Gp+glg++ ++   + + +elg++++lF +Gle+++++l++ +++i+ l+ l+vl +++l+ l
      EGE26969.1  15 TLLG-AAVIAVpLFRKIGLGSVLGYLAGGLIIGPFGLGIFTDP-QTIIHTAELGVVMFLFIIGLEMHPSHLWSLRRQIFGLGSLQVLGATALMML 107
                     3333.44444448**************************9999.999999******************************************555 PP

                     HHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTX.XXXXTSSSTSXHHHHHHHHHHHH CS
  Na_H_Exchanger  97 llylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalak.eeaggetslllllliflvvavgg 190
                     +l+   i+g+++  a++ ++ + +t++++v+++l e++r+++  g+ ++++++++D++ v+lla++  l +  +++++ ++ ++++++  +++++
      EGE26969.1 108 VLK---IFGVSWQVAFVGASGFVLTSTAIVMQTLGENNRLSTAKGQSMVSILLFEDLLIVPLLAIVAFLSPvVHTSETPAWQAIAVALGSLLALL 199
                     555...6899*******************************************************999999*99********************* PP

                     HHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHSXHHH CS
  Na_H_Exchanger 191 lllglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklseklesfreglfnplfFvlvGlsldlkv 285
                     ++++++i  l+ ++ ++  + re+ ++++ll++l++all+el g+s+++gaf+aG++lse++f+++l++++e+fr gl+++lfF+ vG+ ldl++
      EGE26969.1 200 IVGRVLINPLFTILAKT--GVREIMTAAALLVVLGSALLMELGGLSMAMGAFVAGVLLSESSFRHQLEADIEPFR-GLLLGLFFLGVGMALDLSI 291
                     *****************..********************************************************.******************* PP

                     HHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTT.SSTTTCSTSXHHHHHHHHHHH CS
  Na_H_Exchanger 286 lnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarel.yallivvvlftvlvqGlslkp 377
                     +   ++++ l+ l ++a+++++ l++++++r ++ ++  a+  ++ ++q g++a++l++++ + +++++++  +l+++vv+ +vl     ++ 
      EGE26969.1 292 V---TKNWQLISLGVIALMFTKGLWIYFVARMTKAGHAIAIERAVMMAQGGEFAFVLFSAAATHSVISADThANLTAIVVMSMVL-----TPL 376
                     *...9******************************************************************88888888887777.....443 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.1     5e-26   4.5e-22       1     115 [.     406     520 ..     406     521 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 5e-26
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESS CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqd 98 
                 iii+G+Gr G+ +   +++ g+ + ++id+d ++v+ l++ g+++++g+at+ ++L+ agi+ka++v++a+++ ++ + +v ++++  ++++i+ara d
  EGE26969.1 406 IIILGHGRYGQVVNGMMTAcGY-QTTLIDSDADHVDGLSNLGIQTYYGNATRFDLLDMAGIAKAKLVLIAIDHPKEALSIVRHLRHTYNDLPIVARAYD 503
                 89*****************999.6*************************************************************************** PP

                 GGGHHHHHHHTTSEEEE CS
      TrkA_N  99 pehaellkklgadvvis 115
                 + ha  l k+ga +vi 
  EGE26969.1 504 RIHAYQLHKAGASAVIR 520
                 ***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4527.80
//
Query:       EGE26970.1  [L=431]
Description: magnesium and cobalt transport protein CorA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-60  202.6   0.1    1.2e-59  202.0   0.1    1.3  1  CorA       CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
      0.053   13.1   0.6      0.071   12.7   0.6    1.1  1  TauE       Sulfite exporter TauE/SafE
      0.058   13.8   0.1       0.11   12.9   0.1    1.4  1  HEPN_Apea  Apea-like HEPN


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.0   0.1     2e-63   1.2e-59       2     292 .]     135     427 ..     134     427 .. 0.94

  Alignments for each domain:
  == domain 1  score: 202.0 bits;  conditional E-value: 2e-63
        CorA   2 agfvWldlsspteeeleeLaeelgldelaledlldseerprvedyd.dylllvlpsveldkseeeeeevplsillgdnflitvrreplealdevikrlk 99 
                 ++f+Wl l++p+ e+ +e+++ ++l+elaled+ ++++rp+ve+y+ d++++v++  +l++++ ++  +  +i++g+nf+i+vrr+  ++   v++ + 
  EGE26970.1 135 NQFIWLGLYDPSLETVQEVQDAFDLHELALEDAFADHQRPKVESYGnDTIFVVVRTAKLEDNQIRYGTT--AIFMGKNFIISVRRGASNSYTPVREHCH 231
                 69*****************************************77615667777777777777776666..**************************** PP

        CorA 100 .deggkpkspgellyrlldeivdrlfellekleeeldeledel.edstkkeilrelaqlrrrlvklrralapnrevlkrlla...kaddkllddedkey 193
                  + ++ +  p  +l+++ld ivd+++++++ l   l+e e+++ +++ +k+ l++l++l+ +lv++r +++p ++v + +++   +++ + ++ ++k+y
  EGE26970.1 232 rRPEKLRLGPIFVLHAILDFIVDNYLPITDRLGNYLREQERNIfSHEFSKSTLKSLYELKSQLVHMRAVILPVQDVCNFFINhkkNELVSAFPVAAKPY 330
                 988899************************************************************************5555444888888899***** PP

        CorA 194 lrdlldelerllemlealrerleslqdtyssllserlNrvmkvLTvltaif.lPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfwfk 291
                 +rd+ d+l r+++ ++ l e+l++ +dty+++++  +N+v+++L+ ++ i  +P T ++GiyGmNf+++Pel+  y y+ v  +g+++l++++l+  f+
  EGE26970.1 331 FRDVNDHLLRSIDAVNGLNEMLSVAMDTYMAMVTMGQNDVVRKLAAWAGIAaVP-TAVAGIYGMNFDYMPELHIRYAYFVV--VGAVMLVCLFLYTKFR 426
                 ******************************************************.*********************99999..***************9 PP

        CorA 292 r 292
                 +
  EGE26970.1 427 K 427
                 7 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   1.2e-05     0.071      35     109 ..     344     420 ..     322     430 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
        TauE  35 vavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallll..llpsellkllfgvlllllallmll 109
                 ++++++ +++va+ +  a+    ++ v  +l+ + ++++++ a++G++ ++  ++p+ +++ ++ v++ ++ l  l+
  EGE26970.1 344 AVNGLNEMLSVAMDTYMAMVTMGQNDVVRKLAAWAGIAAVPTAVAGIYGMNfdYMPELHIRYAYFVVVGAVMLVCLF 420
                 56677777777777777777777778999*****************9999988999998888888888666666654 PP

>> HEPN_Apea  Apea-like HEPN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.8e-05      0.11      37      90 ..     249     298 ..     228     318 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
   HEPN_Apea  37 lEaldllldkkeeitekislrsnaylkedkeerkelkkkikklYdlRSkivHgg 90 
                 l+++    d+   it+++ + + ++ + + ++ +  k+++k+lY+l S++vH +
  EGE26970.1 249 LDFI---VDNYLPITDRLGNYL-REQERNIFSHEFSKSTLKSLYELKSQLVHMR 298
                 5666...444344777775444.333336788888999**************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3139.77
//
Query:       EGE26971.1  [L=430]
Description: ATP phosphoribosyltransferase regulatory subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-85  285.2   0.1    7.3e-85  285.0   0.1    1.1  1  tRNA-synt_His  Histidyl-tRNA synthetase
  ------ inclusion threshold ------
       0.16   10.7   0.0        0.3    9.8   0.0    1.3  1  LAX            Lymphocyte activation family X


Domain annotation for each model (and alignments):
>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.0   0.1   8.1e-89   7.3e-85       1     310 []      29     349 ..      29     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 285.0 bits;  conditional E-value: 8.1e-89
                    T---EETCHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHHCTTSTCCHH.HS-EEE-T.TSSEEEE-SSSHHHHHHHHHHHHHTSS-EEEEEE CS
  tRNA-synt_His   1 glrdllpeeaekieelrrrlldlfeswGYelVspPllEyldslltgagedld.qtfklvDq.sgrllglRaDiTpqvaRiaahrlnrerplRlcYa 94 
                    g++d+l  +a+k+e+lr +ll ++ ++GY+lVspPl+Ey++sll++a+edl+ qtfk++Dq +grl+glRaDiTpq++Ri+++   ++++ R+cY 
     EGE26971.1  29 GVADVLFTDAQKQESLRDALLFVLTAHGYRLVSPPLIEYTESLLNNADEDLKrQTFKFIDQlNGRLMGLRADITPQILRIDSKY--GQGISRYCYV 122
                    799***********************************************9889***************************997..8********* PP

                    EEEEESS-SSTT--CCEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHCTS..SSEEEEEEETCHHHHHHHHTT--HHHHHHHHHHHHCT-HHHHHH CS
  tRNA-synt_His  95 GsvlrtrpdglgrsreplQvGaEliGaegleadlEvlslllealeaaagv..kelrldlghvglvralleaaglsesleeallaalarkdlaelke 188
                    G+v++t p+gl + r+plQ+GaE++G +++ a+lE+++ll+++ +  +g+  + l++d+ghv+++++l++  g+s++++++l  ++++k+++el++
     EGE26971.1 123 GQVVKTLPTGLFGLRTPLQLGAEIFGIDDIRAELELIDLLVALAD-EIGLgrQMLHVDIGHVAIFDRLCQLHGVSNKDADELIGIYHKKAMPELAK 217
                    ********************************************8.66654499****************************************** PP

                    HHHCCTTH....HHCCHCC.........HCCHCCCHHHHCHCCHCT.HHHHHHHHHHHHHHHHHHHHHHHH-TTEEE-TT--TTTTT--SEEEEEE CS
  tRNA-synt_His 189 laaeaglk....ealrellkal......elygdaevleealealaa.apalqaaldeleelaallealakpevrvtlDlaelrgyeYytGlvFaay 273
                    ++++ g +    ++++++l ++      ++  +ae+l ++l++ a+ ++++ +a +el+ laa+++a+   +++v++D++el+gy+Y+tG+vF+ay
     EGE26971.1 218 WCQNMGNSlnspSDATDFLVLAkhtlssDRTPNAEALLNKLSDKARqDNQIIQAANELATLAAHIRAV---GMSVSIDVTELSGYHYHTGVVFNAY 310
                    **986654666666666665545411333344455655555544440445555556666666666655...6************************ PP

                    ETT...-SS-SEEEEEECTTTGGGT---EEEEEEEEHHHH CS
  tRNA-synt_His 274 aeg...vgqaiarGGrYdelgaafgrarpAtGfsldleal 310
                      +   ++qa++rGGr+d+++ + + ar AtGfs+d+++l
     EGE26971.1 311 LGNrttQTQALVRGGRFDGISTH-SVARGATGFSMDINRL 349
                    966222568*********99987.699**********987 PP

>> LAX  Lymphocyte activation family X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   3.4e-05       0.3      77     128 ..     240     291 ..     236     301 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 3.4e-05
         LAX  77 RhqsrsiriFStEsLlsRnsdspesehvpsqadnalqvhrasvhaveyavgi 128
                 +h  +s r   +E+Ll + sd+ + +  + qa n l +  a++ av+++v+i
  EGE26971.1 240 KHTLSSDRTPNAEALLNKLSDKARQDNQIIQAANELATLAAHIRAVGMSVSI 291
                 677788888899*************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3141.34
//
Query:       EGE26972.1  [L=429]
Description: adenylosuccinate synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-172  574.0   0.0     2e-172  573.9   0.0    1.0  1  Adenylsucc_synt  Adenylosuccinate synthetase


Domain annotation for each model (and alignments):
>> Adenylsucc_synt  Adenylosuccinate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  573.9   0.0  1.1e-176    2e-172       1     419 []       5     421 ..       5     421 .. 0.98

  Alignments for each domain:
  == domain 1  score: 573.9 bits;  conditional E-value: 1.1e-176
                      .EEEE-SSS-S-HHHHHHHHHTT-SEEEE-SB-TTSSEEEEETTEEEEESSS-GGGGSTT-EEEE-TTBEE-HHHHHHHHTTSS-TT......T CS
  Adenylsucc_synt   1 vvvvGaqwGDEGKGkivDllaeeadvvvRfqGGanAGHtvvvdgkkyklhllpSGilnpgvvnviGngvvvdpealleEieeleakgvelsker 94 
                      vvv+G+qwGDEGKGkivDll+e+a++v+RfqGG+nAGHt+vv+g+k++lhl+pSGil++gv+++iGngvv++peall+E++ l +kgv + +er
       EGE26972.1   5 VVVLGSQWGDEGKGKIVDLLTEKATAVARFQGGHNAGHTLVVGGEKTVLHLIPSGILREGVTCFIGNGVVLSPEALLKEMNGLIEKGVPV-RER 97 
                      69**************************************************************************************77.8** PP

                      EEEETTSEE--HHHHHHHHHHHHH----------TTHHHHHHHHHTT---BGGGGGSHHHHHHHHHHHHHHTHHHHHHT....T-----HHHHH CS
  Adenylsucc_synt  95 llisdrahlvlpyhkalDkleeaakgkkkiGtTkkGiGpayadkvarrgirvgdlldeeeleeklekllelknkllekldk.eeleveelleel 187
                      l+is  + l++pyh alD+++e ++g++kiGtT++GiGpay+dkv+rr+++v+dl++ + l ekle+lle++n  l++++k ++++++++l+ +
       EGE26972.1  98 LRISPACPLIMPYHTALDQAREIKRGSGKIGTTGRGIGPAYEDKVSRRALKVADLFR-ADLPEKLENLLEYHNFALTEYYKvDAIDFDTTLKLC 190
                      ********************************************************7.579******************9999*********** PP

                      HHHHHHHGGGEE-HHHHHHHHHHTT--EEEE--S-GGG-TTTSSTTSS-SS--SHHHHHHHTT--GGGEEEEEEEEESSEEESSSS--TTB--S CS
  Adenylsucc_synt 188 lkyaerlkpyvvdtvallnealkegkkvLfEGaqgtllDidhGtYPfvTsSnttaggaltglglapkkidevlgvvKAyttrvGeGpfptelkd 281
                      +++a+ lk++v+d+++ l+   ++g++++fEGaqgtllDidhGtYPfvTsSnttagg+ tg+gl+p ++d+vlg++KAyttrvG+Gpfptel+d
       EGE26972.1 191 QEWASDLKDLVIDVTDALEIRRQNGENLMFEGAQGTLLDIDHGTYPFVTSSNTTAGGVSTGTGLGPLYLDYVLGITKAYTTRVGSGPFPTELFD 284
                      ********************************************************************************************** PP

                      HHHHHHHHHTT-B-TTT--B-EEE-EEHHHHHHHHHHHT-SEEEEE-GGGGTT-SEEEEEEEEEETTEEESS--S.....-GEEEEEEEEE--. CS
  Adenylsucc_synt 282 evgeklrekGkEfgtttgrpRrcGwlDlvllryavrvngvtelaltklDvldgldeikvcvaYkldgkeldefpasleelekvepvyeelpgWk 375
                      +vg +l ++G+Efg+ttgr RrcGw+D+v lr+av +n++++++ltklDvldgldei++c++Y++ + e+    +++e +ekv p+ye+lpgW+
       EGE26972.1 285 DVGAHLAKVGHEFGATTGRARRCGWFDAVSLRRAVVLNSMSGICLTKLDVLDGLDEINICTSYEVPEGECA-GAYDAEYYEKVVPKYETLPGWS 377
                      ****************************************************************7665543.344789999************* PP

                      S--TT---GGGS-HHHHHHHHHHHHHHTS-EEEEE-SSSTT-EE CS
  Adenylsucc_synt 376 edisgvrsfedlpenakkyvefieellgvpvkiisvGpereqti 419
                      e++ gv++f++lp+na+ y+++ie l+g+pv+iis+Gp+r++ti
       EGE26972.1 378 ESTIGVTNFDSLPANAQVYIKRIEALVGCPVDIISTGPDRDETI 421
                      ******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3317.36
//
Query:       EGE26973.1  [L=147]
Description: glyoxalase/bleomycin resistance protein/dioxygenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-16   60.7   0.0    1.8e-16   60.5   0.0    1.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    5.5e-05   23.4   0.1     0.0025   18.1   0.1    2.2  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
     0.0011   19.8   0.0     0.0015   19.3   0.0    1.2  1  Glyoxalase_6  Glyoxalase-like domain
     0.0095   15.6   0.0        2.9    7.5   0.0    2.1  2  YecM          YecM protein


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   3.9e-20   1.8e-16       1     128 []       6     135 ..       6     135 .. 0.93

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 3.9e-20
                 EEEEEEEEESHHHHHHHHHHHHHTSEEEEEEEE.....EESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC..TSEEEEEEEEEHCHHHHHHH CS
  Glyoxalase   1 gidhvallvgdleksldFYtkvLGfklvkktdn.....teeteglriaffhaggghielvlneapsgaakhvkkiee..tvhhvafialdvedvgkald 92 
                 g++hva++++d+++++++Y+k+L++  v  +       t+e +  +++f++aggg i  + + ++++a+ + ++  +    +h+a+ ++++e + ++ +
  EGE26973.1   6 GVHHVAYRCKDAKETVAWYQKHLNMGFVLAIAEdkvpsTGEPDPYMHIFLDAGGGNILAFFELPTKPAMGRDEN--TpiWTQHLALKVDSEETLSATKQ 102
                 68*********************999999998888999999999999**********************99944..255789***************** PP

                 HHHHTTGEEEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase  93 rlkeagvkvvaepgrhyfgalysfyfrDpdGillei 128
                 +l +ag++v ++++++ f+++y   f+Dp+G+++e+
  EGE26973.1 103 KLIDAGLEVLGPVNHTLFKSIY---FFDPNGHRVEL 135
                 **********************...99*******96 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   5.6e-07    0.0025      67      89 ..       5      27 ..       4      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.6e-07
                  -EEEEEEEEES-HHHHHHHHCTT CS
  Glyoxalase_4 67 eglhhlaywvddldaavarleeq 89
                   g+hh+ay+++d +++va+++++
    EGE26973.1  5 QGVHHVAYRCKDAKETVAWYQKH 27
                  69******************986 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.3e-07    0.0015       2     106 ..      10     135 ..       9     136 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.3e-07
  Glyoxalase_6   2 vvldaadpaalaaFwaaal..gweveree.....aaledpeg.vgpaaedaatllfqrvpe..........paknrvHldlav...edldaevarlv 77 
                   v+  ++d+++ +a++++ l  g++++  e     +  +dp     + a+++  l+f + p+          p +   Hl l+v   e l a+ ++l+
    EGE26973.1  10 VAYRCKDAKETVAWYQKHLnmGFVLAIAEdkvpsTGEPDPYMhIFLDAGGGNILAFFELPTkpamgrdentPIW-TQHLALKVdseETLSATKQKLI 105
                   7789*************98778888877788988555555441455678888999999999*999965544222.48******5555567******* PP

  Glyoxalase_6  78 alGArvlreprdgthgr.vlaDPeGneFcv 106
                   ++G +vl++ ++   +   + DP G++  +
    EGE26973.1 106 DAGLEVLGPVNHTLFKSiYFFDPNGHRVEL 135
                   **********9999888*********8765 PP

>> YecM  YecM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00064       2.9      33      59 ..       8      34 ..       4      40 .. 0.89
   2 !    6.0   0.0    0.0019       8.6      32      58 ..      84     111 ..      77     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00064
                EEEEEE-S-HHHHHHHHHHHTTTEEEE CS
        YecM 33 DHialRvneeetaeawkeallqegell 59
                 H+a+R+++ +   aw ++ l+ g +l
  EGE26973.1  8 HHVAYRCKDAKETVAWYQKHLNMGFVL 34
                6********************999877 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0019
                 EEEEEEE-S-HHHHHHHHHHHTTTE.EE CS
        YecM  32 iDHialRvneeetaeawkeallqeg.el 58 
                 + H+al+v++eet +a k++l + g e+
  EGE26973.1  84 TQHLALKVDSEETLSATKQKLIDAGlEV 111
                 57*******************9999555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1243.33
//
Query:       EGE26974.1  [L=76]
Description: fumarylacetoacetate hydrolase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-19   67.6   0.4    1.2e-18   67.3   0.1    1.3  2  FAA_hydro_N_2  Fumarylacetoacetase N-terminal domain 2
  ------ inclusion threshold ------
      0.039   13.7   0.1      0.044   13.5   0.1    1.0  1  DICT           Sensory domain in DIguanylate Cyclases and Two
      0.092   12.9   0.0        0.1   12.7   0.0    1.1  1  DUF3461        Protein of unknown function (DUF3461)


Domain annotation for each model (and alignments):
>> FAA_hydro_N_2  Fumarylacetoacetase N-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.98   5.9e+03      39      47 ..       2      10 ..       1      16 [. 0.73
   2 !   67.3   0.1     2e-22   1.2e-18      11      68 ..      19      74 ..       9      76 .] 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.98
  FAA_hydro_N_2 39 LdnWdevep 47
                   L++W+++++
     EGE26974.1  2 LNEWAQTKK 10
                   788888765 PP

  == domain 2  score: 67.3 bits;  conditional E-value: 2e-22
  FAA_hydro_N_2 11 rDGeLvvVsrdlkkavdaseiaptlqaaLdnWdevepaLeelyeaLnagtakeafafd 68
                    DG+LvvVsrdl+++ ++++iaptlqaaLd+W+ v+p+L+++y++Ln+++  ++ +fd
     EGE26974.1 19 HDGSLVVVSRDLSQYRKVEDIAPTLQAALDDWEVVSPKLQAVYQDLNDNR--NGLPFD 74
                   7**********************************************988..555665 PP

>> DICT  Sensory domain in DIguanylate Cyclases and Two-component system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   7.4e-06     0.044       4      67 ..       2      66 ..       1      70 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.4e-06
        DICT  4 LyqlalsalappsplvvskatLlalvraleDllieqkipatlwvklqrekiwqse.lerYrrlag 67
                L++ a+ + ap +++ v   +L+ ++r l +    ++i++tl ++l ++++   +  + Y++l +
  EGE26974.1  2 LNEWAQTKKAPKHAQWVHDGSLVVVSRDLSQYRKVEDIAPTLQAALDDWEVVSPKlQAVYQDLND 66
                778888888899*******************99999****************9994567998865 PP

>> DUF3461  Protein of unknown function (DUF3461)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.7e-05       0.1      52      90 ..      19      57 ..       7      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
     DUF3461 52 rqrkkvlvdsgseeykevseisavlrkvleeLdkltekk 90
                   + v v  + ++y++v++i+++l+ +l++ + ++ k 
  EGE26974.1 19 HDGSLVVVSRDLSQYRKVEDIAPTLQAALDDWEVVSPKL 57
                556778888899*******************99987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 581.72
//
Query:       EGE26975.1  [L=189]
Description: heme oxygenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-30  106.1   0.2    5.2e-30  104.8   0.2    1.6  1  Heme_oxygenase  Heme oxygenase
  ------ inclusion threshold ------
      0.089   13.2   0.2       0.21   11.9   0.0    1.7  2  Sec3_C_2        Sec3 exocyst complex subunit


Domain annotation for each model (and alignments):
>> Heme_oxygenase  Heme oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.2   5.8e-34   5.2e-30       2     202 ..       5     183 ..       4     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 5.8e-34
                     SHHHHHHHHTHHHHHHHHTSHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHCTTSTTCGGGS-GGG--HHHHHHHHHHHHS.TTHHHHS- CS
  Heme_oxygenase   2 alakeLreaTkdvHneaenlvfvkeflkgsvdkeaYkkllanlyelykalEeeleenkdspviapilfpeLhRkaaLerdlaylyg.sdwrkdie 95 
                     ++a++L+e+T++ H++++++v++  ++   +++e+Y k+l+ + +++k ++                   ++++ aL++ ++ l++  ++++ ++
      EGE26975.1   5 TFAERLKEDTRNIHDSVDETVMSVRPF---DSVENYIKFLNLQSVFHKIVD------------------PIYKDPALNQSIENLASmTRYDAVLN 78 
                     79*************************...9********************..................89**************99******** PP

                     --HHHHHHHHHHHHHHHH.-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSSSSSGGGGH-TTSSSHHHHHHHHHHHHHCS---HHHHHHHH CS
  Heme_oxygenase  96 ispavqkyverlekiaae.epellvAhaYtrylgdLSGGqllkkiaaralelpeeceatafyefesisdrkvfkqeYreaLdslelddearaavv 189
                     +++++++  + ++    +  ++++++++Y+++++++++++l+k+ ++++l+++e+++a ++  +++  +r+++++++re L++l+l++++++ ++
      EGE26975.1  79 DLKDLEQQPNTFKAKLPApMGAKAIGWLYCAEGSNIGAAFLFKD-TKEKLGFDENFGASHLDAHPD--GRGKHWKAFRESLNQLNLSKDEQDTAI 170
                     ************9777766*************************.99*******************..*************************** PP

                     HHHHHHHHHHHHH CS
  Heme_oxygenase 190 eeAreaFrlniev 202
                     ++A+eaF++++  
      EGE26975.1 171 QGATEAFEFYKVA 183
                     *********9875 PP

>> Sec3_C_2  Sec3 exocyst complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.4e-05      0.21      15      86 .]      10      87 ..       3      87 .. 0.80
   2 ?   -1.9   0.0      0.51   4.5e+03      15      28 ..     152     165 ..     148     187 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.4e-05
    Sec3_C_2 15 ikdvlkelefsldeaiie.....sveelaeekielkevkdilqdsilGCeslfstl.nlysle.lstvlndvinieqqq 86
                +k+  +++  s+de++++     sve+ ++  ++l+ v  ++ d i    +l+  + nl s+    +vlnd+ ++eqq+
  EGE26975.1 10 LKEDTRNIHDSVDETVMSvrpfdSVENYIK-FLNLQSVFHKIVDPIYKDPALNQSIeNLASMTrYDAVLNDLKDLEQQP 87
                566677777888887764333338999875.6999999999***********977769****736899**********7 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.51
    Sec3_C_2  15 ikdvlkelefslde 28 
                 +++ l++l+ s de
  EGE26975.1 152 FRESLNQLNLSKDE 165
                 55555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1499.33
//
Query:       EGE26976.1  [L=217]
Description: endonuclease III [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-19   68.9   0.0      6e-19   68.5   0.0    1.2  1  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
      2e-09   36.8   0.0    4.2e-09   35.8   0.0    1.6  1  HHH            Helix-hairpin-helix motif
    1.1e-05   25.6   2.3    1.6e-05   25.0   2.3    1.3  1  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0     1e-22     6e-19       1     107 [.      34     168 ..      34     169 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 1e-22
                 HHHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
     HhH-GPD   1 vsailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv................................. 66 
                 ++++ls+q +d+++n ++ +lf+     tp++++d+  + L+++i+++G+y++Ka +++++++ l+                                 
  EGE26976.1  34 IAVMLSAQATDKSVNIATDKLFKVA--NTPKAILDLGLDNLKSYISSIGLYNSKAANVIKTCQDLItkhngqvprtrdelealagvgrktanvvlntaf 130
                 689*********************5..5*********************************************************************55 PP

                 S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 gkpdvlivvDvhvrrilkrlrsikekktkkkvekkleelle 107
                 g  +++++vD+h+ r+ +r +++   kt   vek+l++ ++
  EGE26976.1 131 G--EPVMAVDTHIFRVGNRTGLATG-KTVLAVEKALMKRIP 168
                 5..89******************99.6*********99876 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0     7e-13   4.2e-09       2      29 ..     100     127 ..      99     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 7e-13
                 HHHHHTSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAeaIls 29 
                 ++g +p++r+eL+al GVG+ktA+++l+
  EGE26976.1 100 HNGQVPRTRDELEALAGVGRKTANVVLN 127
                 89************************95 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   2.3   2.7e-09   1.6e-05       1      17 []     187     203 ..     187     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.7e-09
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaDlC 17 
                    CTAR PkC+aC++ D C
     EGE26976.1 187 CTARQPKCGACVVFDEC 203
                    ***************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1728.07
//
Query:       EGE26977.1  [L=793]
Description: ion-like peptidase S16 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.6e-154  513.5   3.1   3.6e-153  511.0   3.1    1.8  1  AAA_32    AAA domain
    3.3e-08   33.3   0.3    8.9e-08   31.9   0.0    1.8  2  Lon_C     Lon protease (S16) C-terminal proteolytic domain
     0.0037   17.7   0.1      0.019   15.3   0.1    2.3  2  AAA_16    AAA ATPase domain
     0.0077   16.0   0.3       0.45   10.2   0.0    2.8  3  AAA_24    AAA domain


Domain annotation for each model (and alignments):
>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  511.0   3.1  8.1e-157  3.6e-153       6     514 .]      39     531 ..      35     531 .. 0.98

  Alignments for each domain:
  == domain 1  score: 511.0 bits;  conditional E-value: 8.1e-157
      AAA_32   6 pleeiigqeRAvealefglkikkkgYNifvlGesgtGrttlvkrlleeiakkeptpdDwcYvnnfdnpeePkalsLpaGkGkelkkdmeelveelkkei 104
                 + +  +gq+RA++al+++l+i+++gY++f++Ge+g+G++tlv+rll e+ak++ptp+Dw+Yv++f++ ++P+a+ +paG++  +++++++l++++kk++
  EGE26977.1  39 KPDIAFGQSRAIKALNTALDIHANGYHVFAVGENGLGKRTLVTRLLAERAKHMPTPNDWVYVHHFEDIRRPIAIDFPAGMAIIFQQKVHKLWQNAKKKL 137
                 557789********************************************************************************************* PP

      AAA_32 105 pkafeseeYeerkeeieeefeekeeelleelekeaeekgfalkrtpeg.ivlvPlkdgkplseeefealpeeerkeleekseeleeeleeilrelrele 202
                  + + +++++++ e i++++  ++++ +++++++a+++++ lk+t +g + +v+++d kp++ ++++               +l+++l e+  el ele
  EGE26977.1 138 VAKLLGDTHQNHIELIKSAIPLQQNKRFDAINADAKQHNLVLKTTGDGrVHFVAIDDSKPIDTKKLA---------------QLQKQLLEAQIELSELE 221
                 ***********************************************989999999****9987655...............6899999999******* PP

      AAA_32 203 keakeklkelerevakeaveplleelkekykdlekvleyLeaveedilenlelfleeeeeeeeeekkkkedelkrYkvnvlvdnsetegaPVvvednpt 301
                 ++++e+l+el++++ak+++ep+++++ +++++++k +++L a+++d+++n++++++e++++     ++ ++  +rY vn+lv+++++ gaP+v+ed pt
  EGE26977.1 222 DSTHEALDELHQSTAKKVLEPMFNAVMANFENHPKAIRHLMAIQDDMVKNITHIINEDDDNFI--ATSLSQVPSRYVVNILVSHQPSAGAPIVFEDLPT 318
                 **********************************************************99965..55799***************************** PP

      AAA_32 302 yanLfGkieyesemgalvtdftlIkaGaLhkAnGGyLildaedlLeeplaWeaLkraLrskeikiesleeqlglistvsLkPepipldvKViLiGsrel 400
                 + nL+G+iey++e g++ td+++I+aGaLhkAnGGyL+l+a++lLe+p+aW++LkraL+sk+iki+sle++l+l+ + sL+P+ + ldvKViL+G+++l
  EGE26977.1 319 HLNLLGHIEYTTELGTVLTDVSMIRAGALHKANGGYLLLEAQSLLEHPYAWQGLKRALQSKQIKISSLEQMLTLTGSLSLEPDSVALDVKVILLGEADL 417
                 *************************************************************************************************** PP

      AAA_32 401 YylLseyDpdfkklFkvkadFddemerteenekkyarfiasivkkekllpfdrsavarlieyssrlaedqeklstrfseiadllrEAdywakkegaevv 499
                 Yy L e +p+f+ +Fkv+adF+d+++r++ +e  ++  + +++k+++l++fd++a+a +i++ s+l++d++kl ++ ++++ ll+E++ +a+ e++++v
  EGE26977.1 418 YYELLEFEPEFNSVFKVRADFHDDIQRDDCSEYGMVLKMVDMIKSHQLPNFDNTAFAVIIDELSKLSDDKNKLDLHADRLSGLLVESARIATLENNKIV 516
                 *************************************************************************************************** PP

      AAA_32 500 eaehVekAleekeeR 514
                 +a+hV++Al++ +eR
  EGE26977.1 517 TAKHVQTALDDITER 531
                 *********987776 PP

>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       1.9   8.5e+03     160     197 ..     233     274 ..     231     277 .. 0.66
   2 !   31.9   0.0     2e-11   8.9e-08     108     200 ..     643     746 ..     638     749 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.9
                 HTT-SBEEEEGGGG..GGTTTS-HHHHTS-B--..EESBHHH CS
       Lon_C 160 ragikkvilPkene..kdlediPeevreeleii..lveevde 197
                 ++  kkv+ P  n+   ++e+ P+++r+ + i+  +v+++ +
  EGE26977.1 233 QSTAKKVLEPMFNAvmANFENHPKAIRHLMAIQddMVKNITH 274
                 566678888876642268899999999888775224555555 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 2e-11
                 GGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHH...HHHH.TT-...SBEEEEGGGGGGT...TTS-HHHHT.S-B--EESBH CS
       Lon_C 108 dGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekll...aakr.agi...kkvilPkenekdl...ediPeevre.eleiilveev 195
                 dG sa ++ a al+s+l+++++ +++a+tG +   G+  ++GG+  k+     a r +g+   + vilP++n  +l   +di ++v++ +++i +++++
  EGE26977.1 643 DGDSATLAEACALLSALANIPIAQNLAITGSMNQLGQAQAVGGVNAKIAgffDACRdKGLdgnQGVILPRANIAQLmlrDDIVQAVKDeQFHIYAIDHI 741
                 9**********************************************863333555245522268********99977779999999625899999999 PP

                 HHHHH CS
       Lon_C 196 devlk 200
                  + l+
  EGE26977.1 742 TDALA 746
                 88775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   4.3e-06     0.019       3     107 ..      44     191 ..      43     268 .. 0.58
   2 ?   -2.7   0.0       1.5   6.8e+03      66      88 ..     703     731 ..     674     774 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.3e-06
      AAA_16   3 vGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd......................ggiflrgkcdqlesaipy.......... 69 
                 +G  + +++L++al+  + g    v+ +Ge G GK +lv++ll +  k+                      +                +          
  EGE26977.1  44 FGQSRAIKALNTALDIHANG--YHVFAVGENGLGKRTLVTRLLAERAKHmptpndwvyvhhfedirrpiaiD----------------Fpagmaiifqq 124
                 688999*********66666..68***************999976666678886333322222222222220................12232223344 PP

      AAA_16  70 .sa.laqalareellrqlldeaesaeleawrekleeala............................a 107
                  ++ l+q +++ +l+++ll ++ ++  e  + +++ + +                            a
  EGE26977.1 125 kVHkLWQNAKK-KLVAKLLGDTHQNHIELIKSAIPLQQNkrfdainadakqhnlvlkttgdgrvhfvA 191
                 43336777744.77777777733333332222222222233333333333444444455555555552 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
      AAA_16  66 a......ipysalaqalareellrqllde 88 
                 +      +p++ +aq+  r++++++++de
  EGE26977.1 703 DgnqgviLPRANIAQLMLRDDIVQAVKDE 731
                 04444557777788888887777777776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.018        82       2      48 ..      63     118 ..      62     176 .. 0.60
   2 ?   -3.7   0.1       1.8   8.1e+03      45      79 ..     446     485 ..     440     488 .. 0.62
   3 !   10.2   0.0    0.0001      0.45      32     103 ..     699     769 ..     692     781 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.018
      AAA_24   2 klkiliyGpsgiGKTtlakel.gpkplfidtekGlksldadkfpdie..........s 48 
                 ++ ++ +G++g GK tl+++l  +++  + t +  + +++++f+di+           
  EGE26977.1  63 GYHVFAVGENGLGKRTLVTRLlAERAKHMPTPN--DWVYVHHFEDIRrpiaidfpagM 118
                 5778899************99977777776666..56666666666666655555542 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
      AAA_24  45 dieswedfldevvel.....aaeladyktlviDtidelee 79 
                 d++ + ++l+ v+ +     +  +++   ++iD +++l +
  EGE26977.1 446 DCSEYGMVLKMVDMIkshqlPNFDNTAFAVIIDELSKLSD 485
                 5556666666666666555555555566688888888765 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0001
      AAA_24  32 ekGlksldadkfpdie.swedfldevvelaaeladyktlviDtideleelclaevirqnekaeskedkgdgkG 103
                 +kGl+  ++  +p+++ +  +++d++v+   ++++++++ iD i+++  l + ++i+ ++k  ++ + ++++G
  EGE26977.1 699 DKGLDGNQGVILPRANiAQLMLRDDIVQA-VKDEQFHIYAIDHITDALALLSGMLIDDKNK-HGEYKRNTLFG 769
                 78999999999998886666778888876.55666********************999998.56655566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1010  (0.0563333); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 5376.59
//
Query:       EGE26978.1  [L=225]
Description: 16S rRNA methyltransferase GidB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-47  159.1   0.0    1.2e-46  158.4   0.0    1.3  2  GidB             rRNA small subunit methyltransferase G
    3.5e-07   30.1   0.0    5.3e-07   29.6   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
      6e-06   25.8   0.0    8.8e-06   25.3   0.0    1.3  1  TehB             Tellurite resistance protein TehB
    0.00023   20.8   0.0    0.00039   20.0   0.0    1.5  1  MTS              Methyltransferase small domain
    0.00039   21.1   0.0    0.00086   20.0   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
     0.0012   19.6   0.0     0.0036   18.0   0.0    1.8  2  Methyltransf_12  Methyltransferase domain
     0.0029   17.5   0.0     0.0043   16.9   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   14.9   0.0      0.048   13.1   0.0    1.9  2  Methyltransf_4   Putative methyltransferase
      0.062   13.1   0.1       0.11   12.3   0.0    1.4  2  DUF938           Protein of unknown function (DUF938)
      0.081   13.6   0.0       0.15   12.7   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
       0.14   11.5   0.0       0.19   11.1   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.8   4.6e+03       3      22 ..      10      29 ..       9      32 .. 0.85
   2 !  158.4   0.0   7.4e-50   1.2e-46       2     175 ..      35     212 ..      34     220 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.8
                HHHHHHHHHHHHHHHHS--- CS
        GidB  3 eklkkYlelllkwNkkinLt 22
                +k++++++ + ++ ++++Lt
  EGE26978.1 10 HKFQRFAAAIDEAAQSLGLT 29
                58999999999999999998 PP

  == domain 2  score: 158.4 bits;  conditional E-value: 7.4e-50
                 HHHHHHHHHHHHHHHHHS---S--SHHHHHHHCHHHHHHHGGCS-CCC-....EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT- CS
        GidB   2 leklkkYlelllkwNkkinLtsikepeellerhlldslsvlellkekrd..k.viDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelkl 97 
                 + ++ +Yl+ ll w+k++nLt+i++p+e l +h+ d+++++++l    +  k ++D+G+GaGlP+++Lai++p++++  l+s++kki+F++++++e++l
  EGE26978.1  35 NMQILRYLDGLLLWGKAYNLTAITDPDEALVKHIFDCMAIIPMLPFVTQpnKsLLDIGTGAGLPSVILAILKPDWHIDALDSNQKKIRFIRQISSEIGL 133
                 67899*********************************998887766655325********************************************** PP

                 SSEEEEES-CCC..TTTTT-EEEEEEC-SSSHHHHHHHHCCCEEEEEEEEEEESS--HHHHHCCHCCCCCCCEEEEEEEE CS
        GidB  98 enveivearaee..kqeeekydvvtsRAlaslnelteillkllkegglilalKGksaedeleekekalqlskvevlsvks 175
                 +n++ + +r+e+   q+   ydv+tsRA+asl ++++++ + l + g+++a+KGk++ +e  ++ +a+ ++ +e+  v++
  EGE26978.1 134 KNITPIASRIEHhhAQKAGAYDVITSRAFASLTDFVSLATPCLADTGVLYAMKGKNPTAEEMADLQAWHID-IEPICVPK 212
                 ************999999***************************************99988888888776.56655555 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   3.2e-10   5.3e-07       3      82 ..      84     180 ..      82     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 3.2e-10
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsn............... 81 
                       ++++lD+G+G+G  +  la  l p+ ++  +D +++ i++ r+++++ gl+n++  ++ ie+     +   +D+i+s+               
       EGE26978.1  84 PNKSLLDIGTGAGLPSVILA-ILKPDWHIDALDSNQKKIRFIRQISSEIGLKNITPIASRIEHHHA-QKAGAYDVITSRafasltdfvslatpc 175
                      6899****************.99****************************************543.34499******8444444444444444 PP

  Methyltransf_31  82 ....e 82 
                          +
       EGE26978.1 176 ladtG 180
                      44444 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.4e-09   8.8e-06      29     102 ..      82     160 ..      49     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 5.4e-09
                 S-S-EE.EEES-TTSHHHHHHHHT..T-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S..-EEEEEEE CS
        TehB  29 vkpgkv.ldlgcgqgrnslylsll..gydvtawdknensiafleeikekenlknistalydineaklde..rydfilst 102
                  +p k  ld+g g g  s+ l++l   ++++a+d n++ i f+++i +   lkni+     i++ + ++   yd i s 
  EGE26978.1  82 TQPNKSlLDIGTGAGLPSVILAILkpDWHIDALDSNQKKIRFIRQISSEIGLKNITPIASRIEHHHAQKagAYDVITSR 160
                 56777537**************9944588**************************987777766555542279999875 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.4e-07   0.00039      30     101 ..      83     157 ..      71     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.4e-07
                 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTT..TSTTS-EEEE CS
         MTS  30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvle..eveekkfdli 101
                 + ++++lD+G+GaG+ ++ la  +p+ +++++d + + +++ ++  ++ +l+ ++ +as + +  + + + +d+i
  EGE26978.1  83 QPNKSLLDIGTGAGLPSVILAILKPDWHIDALDSNQKKIRFIRQISSEIGLKnITPIASRIEHhhAQKAGAYDVI 157
                 36788************************************9999888888874444444333003334667766 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   5.3e-07   0.00086       2      76 ..      89     164 ..      88     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.3e-07
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS.SSTTTEEEEEEESTGGG CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlp.fedgsfDlvvssgalhh 76 
                      Ld+G+G G  +  la   ++ ++ ++D +++ ++ +r+  +e gl n++ +   +e+ + +++g +D+++s+ a+  
       EGE26978.1  89 LDIGTGAGLPSVILAILKPDWHIDALDSNQKKIRFIRQISSEIGLkNITPIASRIEHHHaQKAGAYDVITSR-AFAS 164
                      9********99999977569********************99999**********886537999******94.6544 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         3   4.9e+03      16      33 ..      21      38 ..      13      86 .. 0.63
   2 !   18.0   0.0   2.2e-06    0.0036       1      75 [.      89     162 ..      89     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3
  Methyltransf_12 16 eklpdieytgvDispsai 33
                     e+ + + +t +D++  +i
       EGE26978.1 21 EAAQSLGLTITDVQNMQI 38
                     444555556666555555 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.2e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnv 75 
                      L+iG+G G  +  l+   pd+++ ++D +++ i   ++  ++++ +n + +  + ++ + ++ g ++D++++  +
       EGE26978.1  89 LDIGTGAGLPSVILAILKPDWHIDALDSNQKKIRFIRQISSEIGLKNITPIASRIEHHHAQKAG-AYDVITSRAF 162
                      8*******88888888889********************************9999998888776.*****98755 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.6e-06    0.0043      15      91 ..      77     162 ..      62     208 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.6e-06
  Methyltransf_23  15 rllpklraggrvLdiGcGtGillevl..rengfsvtgvDlspeaveiae...........kakkaqkdqfdeqeaaepqgkfdlIvlrev 91 
                       l+   ++++++LdiG+G G  + +l   +  +++++ D + +++  ++           +++ ++ +       a+++g +d+I++r +
       EGE26978.1  77 MLPFVTQPNKSLLDIGTGAGLPSVILaiLKPDWHIDALDSNQKKIRFIRqisseiglkniTPIASRIEH----HHAQKAGAYDVITSRAF 162
                      45555899************5444441133457*******999888888999*9999777333333333....356779*******9965 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     3e-05     0.048       3      56 ..      86     139 ..      84     148 .. 0.92
   2 ?   -2.6   0.0         2   3.3e+03      99     133 ..     168     202 ..     166     218 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
                     EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEE CS
  Methyltransf_4   3 pvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlril 56 
                     + +l+iG+G G   v lA  +Pd+ + +++ ++k ++ + +   + +lkN+  +
      EGE26978.1  86 KSLLDIGTGAGLPSVILAILKPDWHIDALDSNQKKIRFIRQISSEIGLKNITPI 139
                     6789***********************************9999999****9755 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
                     HHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCS CS
  Methyltransf_4  99 llkelarvLkkgGvlelaTDveeyaeemlkvleee 133
                     +++ +   L   Gvl+++   ++ aeem++  + +
      EGE26978.1 168 FVSLATPCLADTGVLYAMKGKNPTAEEMADLQAWH 202
                     66777777888888888888777777777765555 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.2   8.5e+03     174     193 ..      17      36 ..      14      36 .. 0.76
   2 ?   12.3   0.0   6.7e-05      0.11      24      86 ..      84     144 ..      72     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.2
      DUF938 174 edvealaaaqgLqleklvdm 193
                 + ++++a+  gL+++++ +m
  EGE26978.1  17 AAIDEAAQSLGLTITDVQNM 36 
                 67889999999998887666 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.7e-05
      DUF938  24 kttervLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlkpPleldvt 86 
                  ++  +L+i++G+G   v +A + p  +  + d +++    i++  +e++l+n++ P++  + 
  EGE26978.1  84 PNK-SLLDIGTGAGLPSVILAILKPDWHIDALDSNQKKIRFIRQISSEIGLKNIT-PIASRIE 144
                 344.59*******************9999************************96.5655555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.3e-05      0.15       1      70 [.      89     162 ..      89     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.3e-05
                      EEET-TTSHHHHHHH..HTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCT.SS-TT-EEEEEEES- CS
  Methyltransf_11   1 LdvGcGtGrlaeala..krgarvvgvDlskemlklakekaseegl.kvefvvadaekl.pfednsfDlvvssev 70 
                      Ld+G+G+G+ +  la  k   ++ ++D +++ ++  ++ +se gl +++ + +++e+    + + +D+++s+ +
       EGE26978.1  89 LDIGTGAGLPSVILAilKPDWHIDALDSNQKKIRFIRQISSEIGLkNITPIASRIEHHhAQKAGAYDVITSRAF 162
                      8**************64444****************99999999999999******97467779******9975 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.19     154     254 ..      77     180 ..      70     187 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        PrmA 154 aleklvkegeevlDvGtGSGiLaiaaakLgak.kvvavDiDevAvkvakeNae...lNkveaklevalseellkeekadvivaNILaevlielaedikk 248
                 +l  + ++++++lD+GtG+G+ ++  a L  + ++ a+D ++  ++  ++  +   l +++   + + +++++k++ +dvi +   a+ l+++++ ++ 
  EGE26978.1  77 MLPFVTQPNKSLLDIGTGAGLPSVILAILKPDwHIDALDSNQKKIRFIRQISSeigLKNITPIASRIEHHHAQKAGAYDVITSRAFAS-LTDFVSLATP 174
                 455578999************9999888876547889999998887666544400044444433323445555567788887776664.5556665555 PP

        PrmA 249 lvkegg 254
                 ++++ g
  EGE26978.1 175 CLADTG 180
                 555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1811.47
//
Query:       EGE26979.1  [L=261]
Description: chromosome partitioning protein ParA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-54  182.4   3.2      9e-54  182.1   3.2    1.1  1  AAA_31       AAA domain
    1.4e-24   86.5   0.2      2e-24   86.1   0.2    1.2  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    2.1e-09   37.1   1.6    1.9e-05   24.1   0.3    2.2  2  MipZ         ATPase MipZ
    4.3e-09   36.2   2.0    2.9e-08   33.5   2.0    2.2  1  ParA         NUBPL iron-transfer P-loop NTPase
    1.4e-08   34.5   0.8    1.9e-08   34.1   0.8    1.2  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
    4.9e-08   32.7   0.0      1e-07   31.7   0.1    1.4  2  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    4.2e-05   23.0   0.6     0.0034   16.7   0.1    2.2  2  VirC1        VirC1 protein
    4.3e-05   22.8   0.6     0.0034   16.6   0.1    2.2  2  ArsA_ATPase  Anion-transporting ATPase
     0.0084   14.4   0.3      0.012   13.9   0.3    1.2  1  FTHFS        Formate--tetrahydrofolate ligase


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   3.2   4.5e-57     9e-54       1     177 []       1     180 [.       1     180 [. 0.94

  Alignments for each domain:
  == domain 1  score: 182.1 bits;  conditional E-value: 4.5e-57
      AAA_31   1 gkvIaianqKGGvGKTTtsvnlaaala.klgkkvLlvDlDpQanattglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielv 98 
                 +++IaianqKGGvGKTTt+vnlaaala  ++k+vLl+DlD+Q+natt++g++kn +e t+ +vl++ +++++ai +t+   ld+i ++ dLa+++++l+
  EGE26979.1   1 MEIIAIANQKGGVGKTTTTVNLAAALAiIAKKRVLLIDLDSQGNATTSVGLDKNALEYTMADVLLDGVSLQDAILSTD-IGLDVIGANRDLAGIDVSLA 98 
                 689************************88999*******************************************666.678***************** PP

      AAA_31  99 elekkeeilkellekvkde....YDyiiiDcpPsLglltenaLvasdsviipvqaeayaleGleqllktieevkkklnpklei 177
                 ++ +    lk+++ + k      YDyi++Dc PsL+++t+na+ a d viip+q+e+yaleG+++l+ ti+++k+ +n++l+i
  EGE26979.1  99 GVADAPFLLKQAMADAKMAgkleYDYIVMDCAPSLSMITVNAFSATDGVIIPMQCEYYALEGVADLIATIDKLKS-INESLHI 180
                 *****999999998776533444*************************************************998.8888875 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.2     1e-27     2e-24       1     128 []       4     231 ..       4     231 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 1e-27
                 EEEEESSTTSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH............................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
        CbiA   1 iaiastkGGvGKTtlaanLaralar.rglrVllvDaDpqannlaileglendiep............................................ 54 
                 iaia++kGGvGKTt+++nLa+ala  +++rVll+D+D q+n+++++  ++n +e                                             
  EGE26979.1   4 IAIANQKGGVGKTTTTVNLAAALAIiAKKRVLLIDLDSQGNATTSVGLDKNALEYtmadvlldgvslqdailstdigldviganrdlagidvslagvad 102
                 89***********************99*****************877777777779999**************************************** PP

                 .........................................................CCHCCCHHHHHHCHCHHHH....EEEEEEEEESS...-TTCH CS
                 .........................................................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .........................................................dlkrllellealgkkkall..lkiagvvlnrvdgeneetllk 94 
                                                                          +   +  l+++++k k+ +  l i gvv + +d +  +tl +
  EGE26979.1 103 apfllkqamadakmagkleydyivmdcapslsmitvnafsatdgviipmqceyyaleG---VADLIATIDKLKSINesLHIRGVVRTLFDYR--NTLAQ 196
                 ******************************************************5554...55555555555555556************99..55555 PP

                 HHHHHHHHHCTS-EEE.EEE--CCHCCCCHHTS-H CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        CbiA  95 ealeelkqrygvpvlg.viprdeavaeapargepv 128
                 +   el++++g+ v++ +ipr++++aeap+ g+++
  EGE26979.1 197 DVSGELERHFGDLVYQtSIPRNVRLAEAPSFGQSI 231
                 5555666566*********************9976 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.3   9.4e-09   1.9e-05       2      43 ..       3      45 ..       2      68 .. 0.86
   2 !   12.4   0.1   3.6e-05     0.072      87     144 ..     109     170 ..      86     190 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 9.4e-09
                EEEE--SSTTSSHHHHHHHHHHHHHT.TT--EEEEE--TTT-H CS
        MipZ  2 vivlgnekGGsGksttavhvavaLlk.kGarvaaidldlrqrt 43
                +i ++n+kGG Gk+tt+v +a aL+  + +rv  idld + ++
  EGE26979.1  3 IIAIANQKGGVGKTTTTVNLAAALAIiAKKRVLLIDLDSQGNA 45
                799*********************9724578*******87654 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SEEEEEEESSHHHH....CCCEEE-S CS
        MipZ  87 aeleelvadleaeldfividtPGsdsalsrlahsladtlvtPlndsfvdf....dllgkvdp 144
                 ++++++  + + e+d+iv+d+  s s ++  a s  d ++ P+   +  +    dl++++d 
  EGE26979.1 109 QAMADAKMAGKLEYDYIVMDCAPSLSMITVNAFSATDGVIIPMQCEYYALegvaDLIATIDK 170
                 5566666677789******************************9998876444467777774 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   2.0   1.4e-11   2.9e-08       4     163 ..       2     171 ..       1     252 [. 0.59

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.4e-11
        ParA   4 kviavlSgKGGVGKStvavnlAlaLa.kkglkvgllDaDiyGpsiprllgveeekpeqs.ekkli.Pvea......kgikvmSigfllesedeavvwrG 93 
                 ++ia++  KGGVGK+t++vnlA+aLa    ++v l+D+D  G      +g++++  e + ++ l+  v+       ++i +  ig   +     v   G
  EGE26979.1   2 EIIAIANQKGGVGKTTTTVNLAAALAiIAKKRVLLIDLDSQGNATT-SVGLDKNALEYTmADVLLdGVSLqdailsTDIGLDVIGANRDLAGIDVSLAG 99 
                 68************************778899**********8765.5677776555553222221333331122233333333333333344566666 PP

        ParA  94 pmksk.aikqllkdvew.g..elDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkv 163
                    +  ++kq ++d++  g  e Dy+++D+ P  +   +tv     ++g++i    +  al+ v   i+ ++k+
  EGE26979.1 100 VADAPfLLKQAMADAKMaGklEYDYIVMDCAPSLS--MITVNAFSATDGVIIPMQCEYYALEGVADLIATIDKL 171
                 55443156777777776333345777777777765..4444444455677666666666666666666666555 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.8   9.5e-12   1.9e-08       7     249 ..       9     256 ..       2     259 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 9.5e-12
   Fer4_NifH   7 GkGGiGksttsqnlsaalaemg.kkvlivGCDPkaDstrlllggkaqetvldtlrekgavedvkvedvvkkGyggvkcvesGGPepGvGCaGrgvitai 104
                  kGG+Gk+tt+ nl+aala    k+vl++  D + ++t     g  +++ l+      + + v ++d + +   g++++ +    +G+  +  gv +a 
  EGE26979.1   9 QKGGVGKTTTTVNLAAALAIIAkKRVLLIDLDSQGNATTS--VGLDKNA-LEYTMADVLLDGVSLQDAILSTDIGLDVIGANRDLAGIDVSLAGVADAP 104
                 59*****************987489*********999843..3444433.5555555556999***********************************9 PP

   Fer4_NifH 105 elleelgaydd.lDfvlyDvLG.DvvCGGfalPiredka.qevyivtsgelmalyaanniakgiekyaksgg.vrlgGliin..srkvddereliekfa 197
                  ll++  a  +    + yD +  D       + ++   a + v+i +++e  al    ++ ++i k +  ++ + + G++    + + +  +++  ++ 
  EGE26979.1 105 FLLKQAMADAKmAGKLEYDYIVmDCAPSLSMITVNAFSAtDGVIIPMQCEYYALEGVADLIATIDKLKSINEsLHIRGVVRTlfDYRNTLAQDVSGELE 203
                 9999988776546667777543143333334455555552678999********9998999999998776555******97611222334455555666 PP

   Fer4_NifH 198 eelgtkvl.evvPrdeivrkaelrkktvieyapeseqakeyrelarkilenkk 249
                 ++ g  v    +Pr+  + +a    + ++ y+++s+ a  y++l ++++ + k
  EGE26979.1 204 RHFGDLVYqTSIPRNVRLAEAPSFGQSIFTYEKSSKGAIAYHKLMNEVIAQTK 256
                 666655552469999999999999***********************998875 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   5.1e-11     1e-07       1     145 [.       1     151 [.       1     158 [. 0.85
   2 ?   -2.8   0.0       1.8   3.6e+03     175     230 ..     192     248 ..     186     251 .. 0.70

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 5.1e-11
    CBP_BcsQ   1 mkvlalqGvRGGvGttsllaaLawalhel.gesvlviDlspdnlLrlhFnvdieq.regwaraeldgapwrqaaleyapgldllPfGelnveekenlqq 97 
                 m+++a+   +GGvG+t+ ++ La al    +++vl+iDl ++   +++  +d +  + ++a  +ldg  +++a+l    gld++   +  +    +l+ 
  EGE26979.1   1 MEIIAIANQKGGVGKTTTTVNLAAALAIIaKKRVLLIDLDSQGNATTSVGLDKNAlEYTMADVLLDGVSLQDAILSTDIGLDVIGANRDLAGIDVSLAG 99 
                 999***********************9752889******999999999998866526799999*********************777655555666888 PP

    CBP_BcsQ  98 laekaeallaalkelk....eqyrwillDlpagasaltrellaladlvllvv 145
                 +a+++  l++a++  k     +y++i++D+    s +t ++ + +d v+  +
  EGE26979.1 100 VADAPFLLKQAMADAKmagkLEYDYIVMDCAPSLSMITVNAFSATDGVIIPM 151
                 9998888888887766667689***************999999999887655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
    CBP_BcsQ 175 sqlqqDllqlWlqslrrllPl.vihrDealaEalaakqPlgeyrpdslaaeevktLa 230
                  +l+qD+     +++ +l+ +  i r   laEa    q + +y   s  a + ++L 
  EGE26979.1 192 NTLAQDVSGELERHFGDLVYQtSIPRNVRLAEAPSFGQSIFTYEKSSKGAIAYHKLM 248
                 566677766666666666665468888888888888888888888888777766665 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.7e-06    0.0034       1      40 [.       1      41 [.       1      48 [. 0.88
   2 !    4.7   0.0    0.0077        15     140     217 ..      69     146 ..      43     159 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.7e-06
       VirC1  1 mklitfcslkGGaGkttalmglcsalas.dgkrvalfeade 40
                m++i+++  kGG Gktt+ + l +ala   +krv l + d 
  EGE26979.1  1 MEIIAIANQKGGVGKTTTTVNLAAALAIiAKKRVLLIDLDS 41
                899***********************853789999999885 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0077
       VirC1 140 aipvailrqrvPvrrltssqrlisdlleqlPvvdvplherdafaalkerGmlhltlenlsaapsmrlilrnlraaled 217
                 +++ ail + +  + + + + l+   ++   v+d+p+  ++a+a+ k  G l      +  aps  +i+ n   a + 
  EGE26979.1  69 SLQDAILSTDIGLDVIGANRDLAGIDVSLAGVADAPFLLKQAMADAKMAGKLEYDYIVMDCAPSLSMITVNAFSATDG 146
                 455677777777776666665555556666799*********************999999999999999988777665 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.7e-06    0.0034       8      39 ..       9      41 ..       1      59 [. 0.81
   2 !    4.7   0.0    0.0074        15     118     135 ..     115     132 ..      82     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.7e-06
                 ESTTSSHHHHHHHHHHHHHHT.TS-EEEEE-ST CS
  ArsA_ATPase  8 GKGGVGKttvsaatavklsek.gkkvllistDP 39
                  KGGVGKtt    +a+ l+   +k+vlli +D 
   EGE26979.1  9 QKGGVGKTTTTVNLAAALAIIaKKRVLLIDLDS 41
                 5*****************975167899999885 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0074
                  HHHHCSSSSEEEEESBSC CS
  ArsA_ATPase 118 kyvkeeeydvvvlDtaPT 135
                  k+  + eyd++v+D aP 
   EGE26979.1 115 KMAGKLEYDYIVMDCAPS 132
                  334488***********6 PP

>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3   5.9e-06     0.012      59      99 ..       3      43 ..       1      50 [. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.9e-06
                EEESS--TT--SHHHHHHHHHHHHHHTT--EEEEE----SH CS
       FTHFS 59 vtaitPtplGeGKttttigLaqalnklgkkavaalRepslG 99
                + ai+  + G GKtttt+ La al+ + kk v+ +   s+G
  EGE26979.1  3 IIAIANQKGGVGKTTTTVNLAAALAIIAKKRVLLIDLDSQG 43
                568999999*********************99999888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1843.19
//
Query:       EGE26980.1  [L=93]
Description: hypothetical protein EA1_04020 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.2   0.1       0.17   11.1   0.1    1.0  1  Cnd3      Nuclear condensing complex subunits, C-term domain


Domain annotation for each model (and alignments):
>> Cnd3  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.4e-06      0.17     224     280 ..      17      81 ..       4      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.4e-06
                 CHHHHHHHHHHHHT-GGGS---------TT.............--HHHHHHHHHHHHCCCS-THH CS
        Cnd3 224 vspskvleqlvdltdprklvnkteeeeskseseke........eelhldlaleilkelekkeske 280
                 +s +kv +q+vd  d  k v +++++ + ++ + +        +++++d a+++l++l k+++k+
  EGE26980.1  17 LSGTKVSRQVVDVIDDAKMVMADNNQPNDKPQAVSstaesdttHQSADDKAVSVLDNLPKYQQKQ 81 
                 66789**********99999999988877766555788899998899999*******99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 737.50
//
Query:       EGE26981.1  [L=347]
Description: ParB-like chromosome partitioning protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-21   74.5   0.7      3e-20   72.3   0.4    2.2  2  ParBc      ParB-like nuclease domain
    3.2e-17   62.1   1.0    1.3e-15   56.9   0.1    2.6  2  HTH_ParB   HTH domain found in ParB protein
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.043   13.6   0.0    1.7  1  HTH_38     Helix-turn-helix domain
      0.027   14.4   0.4       0.24   11.4   0.1    2.5  2  HTH_Crp_2  Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.4   6.8e-24     3e-20       3      90 .]      85     181 ..      83     181 .. 0.96
   2 ?   -0.5   0.0      0.36   1.6e+03      33      48 ..     254     269 ..     216     277 .. 0.68

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 6.8e-24
       ParBc   3 vplseirpnplqprkd.spekieelvasIkkkGllqPiivrktr........qgryeiiaGerRlrAakrlglkevpvivleiddeeamalslieni 90 
                 + +++++  ++qpr+d ++ +++el+ sIk++G+ qPi++r+              eiiaGerR+rAak++gl+++p+i + ++de a+al+lieni
  EGE26981.1  85 IATNRLQSGKYQPRRDmNEAALNELSLSIKQHGVMQPIVIRPLLsdeskssdTVTHEIIAGERRWRAAKLAGLETIPAIERVLSDEVAIALALIENI 181
                 7889999***********************************98888999988899****************************************7 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.36
       ParBc  33 kGllqPiivrktrqgr 48 
                 + ++qPii+ k  +g 
  EGE26981.1 254 SQEQQPIIAKKIVDGG 269
                 4567999998876555 PP

>> HTH_ParB  HTH domain found in ParB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.018        81      28      43 ..     173     188 ..     166     193 .. 0.79
   2 !   56.9   0.1   2.9e-19   1.3e-15       1      51 [.     231     280 ..     231     281 .. 0.97

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.018
    HTH_ParB  28 lqlqlaekiieegLsV 43 
                   l+l e i++e+L+V
  EGE26981.1 173 IALALIENIQREDLNV 188
                 458999*********9 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 2.9e-19
    HTH_ParB   1 eevqeavsegkiseGHARaLlslkdeelqlqlaekiieegLsVRetEklvr 51 
                 ++v++++++g   +GHARaLlsl+  e+q  +a+ki++ g++VR++E+lv+
  EGE26981.1 231 DQVKQYMIDGVMDMGHARALLSLSQ-EQQPIIAKKIVDGGMTVRDAERLVK 280
                 579**********************.9***********************8 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.6e-06     0.043      19      42 ..     202     225 ..     189     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.6e-06
      HTH_38  19 eGlslreIArrLgrspsTIsRElk 42 
                  G+s + IA  +g++++T+s+ ++
  EGE26981.1 202 FGMSHAMIASVVGKARTTVSNLMR 225
                 59******************9776 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.3e-05      0.24      16      43 ..     197     225 ..     172     227 .. 0.77
   2 ?   -0.2   0.0      0.22   9.9e+02      53      65 ..     267     278 ..     247     281 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.3e-05
                 C.EEEEEHHHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2  16 g.eielpltqeelAsmlGltretvsrils 43 
                   + e+ ++++ +As +G  r tvs +++
  EGE26981.1 197 RfHTEFGMSHAMIASVVGKARTTVSNLMR 225
                 3567899******************9886 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.22
                 ETEEEEES-HHHH CS
   HTH_Crp_2  53 rgrririldleaL 65 
                  g+ ++++d e+L
  EGE26981.1 267 DGG-MTVRDAERL 278
                 233.888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2740.79
//
Query:       EGE26982.1  [L=345]
Description: tetraacyldisaccharide 4'-kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-99  333.3   0.0    1.7e-99  333.0   0.0    1.0  1  LpxK      Tetraacyldisaccharide-1-P 4'-kinase
  ------ inclusion threshold ------
      0.023   14.6   0.1      0.061   13.2   0.1    1.6  1  MobB      Molybdopterin guanine dinucleotide synthesis protei
      0.096   12.7   0.1       0.22   11.5   0.1    1.3  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
       0.21   10.6   0.4       0.36    9.8   0.4    1.3  1  MeaB      Methylmalonyl Co-A mutase-associated GTPase MeaB


Domain annotation for each model (and alignments):
>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.0   0.0  3.8e-103   1.7e-99       1     324 [.      18     337 ..      18     340 .. 0.91

  Alignments for each domain:
  == domain 1  score: 333.0 bits;  conditional E-value: 3.8e-103
                 TGGGGHHHHHHHHHHHHHHHHHHHTTSS--B--SS-EEEEEESBSS-HSHHHHHHHHHHHTTTS..-EEEEE--TSSSS-S.EEEEEETT-HHHH-HHH CS
        LpxK   1 lallLlplsllyglvvalrralyragllkserlpvpVivVGNitvGGtGKTPlvialvkllqarglkvgvlSRGYggkskgapvlvsaessaaevGDEp 99 
                 +++lL+pls lyg+v+++r++ly++g    +r+ vpV+v+GNitvGG+GKTP++ial k l+++g+ v+v+SRGYgg+s ++p lv+++s+++evGDEp
  EGE26982.1  18 WLKLLTPLSGLYGMVMHARKSLYHSGKCPIYRAAVPVLVIGNITVGGSGKTPFIIALTKILRKQGISVAVISRGYGGDSTQMPKLVTPTSTPNEVGDEP 116
                 5789*********************************************************************************************** PP

                 HHHHHHST.....SEEEEESSHHHHHHHHHHHC-.-SEEEEET-SS-TTB--SEEEEEE..EHHHHC--BTTTSSBSS-GGGGGG-SEEEE........ CS
        LpxK 100 lllarrtg.....vpvvVgsdRvaaarallakae.ldviilDDGlQhyaLardleivvvdaergfgngrllPaGpLREplsrlkradlvilngakaeee 192
                 +l+a+++      +p++V+++R +a+ +ll++++ + +ii+DDGlQhyaL+rd e++vvd +rgfgng+llP+G+LREp++rl++a ++++ ++ ++  
  EGE26982.1 117 CLIAQSLYsdgffLPMAVAPNRGQAIDLLLKNFPeTTLIISDDGLQHYALHRDEEWIVVDVARGFGNGKLLPQGFLREPIDRLQDALVLYHDKDMTKYP 215
                 *****542223679***********************************************************************99998886665555 PP

                 ..-TTTSSSS-EEEEEEEE.EETTS-..EE-GGGGTTS-EEEEESSTTHHHHHHHHHHHT--EEEEEEE-TT---TT........----TT-EEEE-HH CS
        LpxK 193 eaekaeeksipvlrmrlepkklalla..aaeeealagkkvlavaGignPerFfktLealglevvetlafpDHhaftaedleeleeeakelgallvtTeK 289
                 ++          ++m+l+ ++   l   +++  +  g+ v+av+Gig+P+rFf+tL+++g+ v+  ++f DHh+f+ edl +l +   ++   +++T+K
  EGE26982.1 216 KK---------AMAMSLKVGQIEPLMgnHKSPVPSVGTYVHAVSGIGHPKRFFDTLSDQGFLVI-PHPFGDHHDFRLEDLVDLIN---HP---IIVTSK 298
                 44.........56788888777555411444455778889************************.7*****************99...78...****** PP

                 HHTTSTT............EEEEEEEEEEHHHHHHHHHG CS
        LpxK 290 Davklaalakenkle....lwvlpveaeleealeeallk 324
                 Davkl++la++++++    +wvlpve+ l++ + e++++
  EGE26982.1 299 DAVKLRHLATQTTHDifnhIWVLPVEMVLSDGIIEQINH 337
                 *******999887778899**********9999999876 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.4e-05     0.061       5      33 ..      60      88 ..      56      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
        MobB  5 vgksgsGKTtLleklipelkarglrvgti 33
                +   gsGKT ++  l ++l+++g++v++i
  EGE26982.1 60 ITVGGSGKTPFIIALTKILRKQGISVAVI 88
                66789**********************99 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     5e-05      0.22       6      33 ..      61      88 ..      56     104 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5e-05
                SSTTSSHHHHHHHHHHHHHHTT--EEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  6 tkGGvGKTtlaanLaralarrglrVllv 33
                t GG+GKT + ++L ++l ++g  V+++
  EGE26982.1 61 TVGGSGKTPFIIALTKILRKQGISVAVI 88
                569***********************98 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.4   8.1e-05      0.36      30      64 ..      55      89 ..      46      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 8.1e-05
                EEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEE CS
        MeaB 30 qvvGltGvPGaGkstlvealglelrrrGkrvavla 64
                 v+G   v G+Gk  ++ al+  lr++G  vav++
  EGE26982.1 55 LVIGNITVGGSGKTPFIIALTKILRKQGISVAVIS 89
                6899999**************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2476.64
//
Query:       EGE26983.1  [L=253]
Description: 3-deoxy-manno-octulosonate cytidylyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-56  191.1   0.0      3e-56  190.8   0.0    1.0  1  CTP_transf_3  Cytidylyltransferase
    2.1e-07   31.4   0.1    2.7e-07   31.1   0.1    1.3  1  NTP_transf_3  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.8   0.0   3.3e-60     3e-56       3     221 .]       7     220 ..       5     220 .. 0.98

  Alignments for each domain:
  == domain 1  score: 190.8 bits;  conditional E-value: 3.3e-60
                   EEEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTTSEEEE--TTCSSHHHHHHHHHHHHTTT.TTSEEEEE-TT CS
  CTP_transf_3   3 IipARsgSkRlpgKnlldlggkpliayvleaalkskafekvivaTDseeiknvakefgasvlvtrsslesdterflevvkaflmseneeiivnlqGd 99 
                   IipAR++S+RlpgK+ll l ++p+i ++ ++alk+ +++ v+vaTD++++ +++ + g+ v++t+s ++s+t+r+++v  ++ ++ +++iivn+qGd
    EGE26983.1   7 IIPARYQSTRLPGKPLLLLHDQPMILWTAKKALKASFVDTVCVATDDDRVYQTCADVGIHVVMTDSTHPSGTDRLAQVATDLGFD-DDDIIVNMQGD 102
                   9************************************************************************************.*********** PP

                   -TT--HHHHHHHHHHHHHSTTSSEEEEEEETTSHHHHTSTTSTEEEETTTSBEEEEESSESSEEHHHHHCTSTTTSEEEEEEEEEEHHHHHHHHHHS CS
  CTP_transf_3 100 nPllqeevikkaietlkenqedylstlvkkvgkeeevlnandlkvllddagkalyfeesvipyireeplelsrrlylshagiytfrkeqplkelvid 196
                   +Pl++  +++++ + l +n+   ++tl +++ ++ee ++++ +kv+  +a+ alyf++++ipy+r+ +l +  ++  +h+g y++r + +lk+++++
    EGE26983.1 103 EPLVPTVLLEQVTQLLIDNPDCAMATLCEPIYNQEEFFRPSVVKVVMNQAKHALYFSRAPIPYDRDGLLDMP-NHAFRHLGLYAYRVR-MLKQFTNW 197
                   ******9999999999999999**************************************************.99************9.******** PP

                   HHHHHSHHHHHT-TTHHHHHTT-EE CS
  CTP_transf_3 197 tptseilekiekleqlrvllegkki 221
                   t+    lek+e leqlrvl++g++i
    EGE26983.1 198 TQGV--LEKLESLEQLRVLENGERI 220
                   ****..****************997 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1     3e-11   2.7e-07       9     121 ..      14     127 ..      11     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3e-11
                   -TTTTTTHHHHCCCCCCHHHHHHHHHCTT..-CEEEEECSHCHHHHHHTTCTS-EEE-TTSS...-SHHHHHHHHHHHH.SSSCEEEEETT-TT--H CS
  NTP_transf_3   9 SsRmggdKallplggkpllervldalraag.vdevvvvggdeevlaalarlgvrvvededpg...kgplaslaaalraaadadavlvlacDmPlltp 101
                   S+R+   K+ll l+++p++ ++++++ +a+ vd v+v+++d+ v++ +a+ g++vv  +  +   +  la +a+ l    d+d ++ + +D Pl+++
    EGE26983.1  14 STRLP-GKPLLLLHDQPMILWTAKKALKASfVDTVCVATDDDRVYQTCADVGIHVVMTDSTHpsgTDRLAQVATDLGFD-DDDIIVNMQGDEPLVPT 108
                   55552.49***************999999757***********************999765410134444455555443.9999999********** PP

                   HHHHHHHHCHHHHTSSEEEE CS
  NTP_transf_3 102 elverllaaaaasgadvvvp 121
                    l+e++++ + +++ d++++
    EGE26983.1 109 VLLEQVTQLLIDNP-DCAMA 127
                   ******99996444.44443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1908.59
//
Query:       EGE26984.1  [L=193]
Description: phosphoglycerate mutase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-27   96.5   0.0    1.9e-27   96.2   0.0    1.1  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0   1.1e-31   1.9e-27       1     170 [.       4     161 ..       4     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 1.1e-31
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..H CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeype 99 
                 +y++RH+e  +  +         +Lt++G++q e+l + ++g++id+ +sSp+kRa++T  ++a+ ++ +++l+e+L E+  G w    ++e  ++   
  EGE26984.1   4 VYFIRHAEPNYANR----DEFSRDLTPKGIAQSERLLDVFRGIDIDVFFSSPYKRAVDTIYPLANSRKKNIHLKEKLCERRIGTWVDN-FDEFSQK--- 94 
                 69*********666....689999**************************************************************99.8888888... PP

                 SHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHH.T--GGGGGGB- CS
  His_Phos_1 100 eleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarll.glpleelrrle 170
                 +++++  + +     +gEsl+ v++R  a+l+e++ +++++t+++ +Hg+++ ++++++  ++ +++++  +
  EGE26984.1  95 QWQDFGFHLK-----NGESLHRVQQRNIAMLHEILINYPNQTIVIGTHGTALSTIIKYYQaDFGYQDFNANK 161
                 5555555555.....6*****************************************998777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1536.04
//
Query:       EGE26985.1  [L=323]
Description: DNA polymerase III delta prime subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-40  136.1   0.0    1.3e-39  135.6   0.0    1.2  1  DNA_pol3_delta2  DNA polymerase III, delta subunit


Domain annotation for each model (and alignments):
>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   7.3e-44   1.3e-39       2     161 ..      17     171 ..      16     173 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 7.3e-44
  DNA_pol3_delta2   2 qeealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelieel 95 
                      q++a+++l +++ ++r+ h +L +G++gigk e+  +++  llc ekn+  +cg+c+sc+ ++ g+hpD++v+ + ++   ik+d+ir l+e  
       EGE26985.1  17 QRQAWQQLTGQFIEQRMPHGLLAAGQKGIGKREFVWRFVAYLLCLEKNQYGACGHCQSCQWLRAGTHPDLLVLPQGDS---IKIDDIRLLQEYS 107
                      8899*********************************************99*********************988887...**********998 PP

  DNA_pol3_delta2  96 srkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfsp 161
                      + k++    k+i++++a+++t  AaNa+LktlEEP + + +iLit+++++lL+ti+SR+q++ +s 
       EGE26985.1 108 QTKGH--GVKVIVLDGADTLTLGAANAFLKTLEEPRDGVFLILITDHPSRLLPTIKSRVQTMPLSY 171
                      88886..689***************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2374.03
//
Query:       EGE26986.1  [L=402]
Description: L-lactate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.7e-130  435.2   0.0   1.9e-130  435.0   0.0    1.0  1  FMN_dh        FMN-dependent dehydrogenase
    9.5e-06   24.8   0.1    2.5e-05   23.4   0.1    1.7  2  IMPDH         IMP dehydrogenase / GMP reductase domain
    0.00038   19.7   0.4     0.0029   16.8   0.2    2.2  2  Glu_synthase  Conserved region in glutamate synthase
  ------ inclusion threshold ------
      0.014   14.9   0.0      0.045   13.2   0.0    1.7  1  His_biosynth  Histidine biosynthesis protein
      0.024   14.0   0.6       0.11   11.9   0.2    2.1  3  NMO           Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.0   0.0  5.3e-134  1.9e-130       1     346 [.      17     382 ..      17     384 .. 0.98

  Alignments for each domain:
  == domain 1  score: 435.0 bits;  conditional E-value: 5.3e-134
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 A++++p++ ++yv++g+ +++t+r+n+++f+ri+lr+r+l+d+ +++l+t+++Gq++s+Pv iaP+g+++++++dge+++araa+k+gipf lst++ +
  EGE26986.1  17 AERKVPRMFYDYVDSGSWTQTTYRNNETDFDRIKLRQRILVDMDNRSLATQMIGQDVSMPVAIAPTGFTGMMWADGEIHAARAAEKFGIPFSLSTMSIC 115
                 799************************************************************************************************ PP

                 -HHHHHHHHTT-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH............. CS
      FMN_dh 100 sleevaaaaegplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaeal............. 185
                 s+e+va+++++p+wfqlyv++d+e++e+l+kra+aa+++al+lt D  vlg+R++d++ng+s+ppk +l+n+l+ ++kpew  ++l             
  EGE26986.1 116 SIEDVAENTTKPFWFQLYVMRDKEFMENLIKRAKAANCSALILTADLQVLGQRHKDIKNGLSAPPKPTLKNILNLMTKPEWCYNMLgtkrhtfrniagh 214
                 *******9999**************************************************************************************** PP

                 ......THHHHHHCCCHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH.....SS-EEEE CS
      FMN_dh 186 ....kkasaaaefvgkqldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavgg...rievlvD 277
                     ++ s+ ++++++q+dp l+wdd++++++++ +pl++KG++++eda +a++ G+d+ v+SNHGGRqldgap++i  L ++v+a +    ++ev++D
  EGE26986.1 215 aknvSDLSSLSAWTAEQFDPGLSWDDVARIKDMWGGPLILKGIMEPEDAIMAARFGADAMVISNHGGRQLDGAPSSIASLTDCVQASQAensNCEVWLD 313
                 98777777777************************************************************************9999854558****** PP

                 SS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCGGE CS
      FMN_dh 278 gGirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldrsll 346
                 +Gir+G+DvlkA+alGA++ ++GR flygl a+Ge+Gv+r+lei+ +e + tma +G ++++ +++++l
  EGE26986.1 314 SGIRSGQDVLKAIALGAKGTMIGRSFLYGLGAYGEDGVRRALEIIYKECDVTMAFCGHTNISTVNSDIL 382
                 ****************************************************************99877 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   7.1e-09   2.5e-05     193     239 ..     291     339 ..     282     348 .. 0.83
   2 ?   -2.6   0.0      0.57   2.1e+03     299     345 .]     351     396 ..     341     396 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 7.1e-09
                 HHHHHHHHH..HHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCC CS
                 xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 193 ltAvaevae..aakkagvpviaDGGikysgdivkAlaaGadavmlGsll 239
                 + +++++++   a++ + +v+ D Gi++ +d+ kA+a+Ga+  m+G+ +
  EGE26986.1 291 IASLTDCVQasQAENSNCEVWLDSGIRSGQDVLKAIALGAKGTMIGRSF 339
                 55677777622566678*****************************876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.57
                 HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH-EEEEE-HHHHHHHS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 299 vkevveqlvgglrsgmgylGaktieelkekakfvritaaglkeshvH 345
                 v++ +e ++++   +m  +G ++i++++++  +v+ t   lk +++H
  EGE26986.1 351 VRRALEIIYKECDVTMAFCGHTNISTVNSD-ILVKGTYEHLKANQPH 396
                 556667777777888899999999888654.4556666666555555 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.072   2.6e+02     282     303 ..     256     277 ..     252     281 .. 0.85
   2 !   16.8   0.2   8.1e-07    0.0029     259     311 ..     294     344 ..     270     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.072
                   S--SHHHHHHHHHHT-SEEE-S CS
  Glu_synthase 282 glktgadvvkalalGAdavgig 303
                   g++ ++d ++a+ +GAda+ i+
    EGE26986.1 256 GIMEPEDAIMAARFGADAMVIS 277
                   577889************9987 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 8.1e-07
                   HHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHTT CS
  Glu_synthase 259 laevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaalialg 311
                   l+  +q+ ++e+  ++ ++  d g+++g+dv+ka+alGA    ig+  l  lg
    EGE26986.1 294 LTDCVQASQAEN--SNCEVWLDSGIRSGQDVLKAIALGAKGTMIGRSFLYGLG 344
                   555555444444..566777899**********************99887776 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05     0.045      51     103 ..     284     337 ..     282     342 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
                   HHHHCTTHHHHHHHHHH.HHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESH CS
  His_biosynth  51 ldaakegreanldlvee.iaeevfipvqvGGGIrsledveelleagadkviigt 103
                   ld+a ++    +d+v++  ae+ +++v++++GIrs +dv +++ +ga+  +ig 
    EGE26986.1 284 LDGAPSSIASLTDCVQAsQAENSNCEVWLDSGIRSGQDVLKAIALGAKGTMIGR 337
                   789999999999999962678889***********************9998885 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.67   2.4e+03     242     274 ..      42      75 ..      31      98 .. 0.74
   2 ?   -1.2   0.0      0.29     1e+03      54      79 ..     117     142 ..     112     173 .. 0.71
   3 ?   11.9   0.2     3e-05      0.11     148     239 ..     262     353 ..     244     384 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.67
         NMO 242 leaklddteltsa..vsGrpaRalatelleeleea 274
                  e  +d+++l ++  v+ +  R lat+++++  + 
  EGE26986.1  42 NETDFDRIKLRQRilVD-MDNRSLATQMIGQDVSM 75 
                 56778888887753356.99999999999876654 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.29
         NMO  54 irkvkaltdkPfgvnlflpkkdaadr 79 
                 i+ v + t+kPf   l++ ++++  +
  EGE26986.1 117 IEDVAENTTKPFWFQLYVMRDKEFME 142
                 88899999***999988877655333 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 3e-05
         NMO 148 earkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd....iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkk 239
                 +a ++++ GaDa+++  ++ GG q + ++   +  +L + v+   +      v    Gi  +++v  a+alGA+g  ig  fL    +  +d +++
  EGE26986.1 262 DAIMAARFGADAMVI--SNHGGRQLDGAPS--SIASLTDCVQASQAensnCEVWLDSGIRSGQDVLKAIALGAKGTMIGRSFLYGLGAYGEDGVRR 353
                 566788899*****9..5889998755554..5555555555444455679999999**************************8766665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3105.79
//
Query:       EGE26987.1  [L=584]
Description: L-lactate permease [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.8e-105  353.7  44.8   2.8e-105  353.0  44.8    1.3  1  Lactate_perm  L-lactate permease


Domain annotation for each model (and alignments):
>> Lactate_perm  L-lactate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.0  44.8  1.6e-109  2.8e-105       4     518 ..       4     552 ..       1     557 [. 0.91

  Alignments for each domain:
  == domain 1  score: 353.0 bits;  conditional E-value: 1.6e-109
  Lactate_perm   4 lvalvPIlllllalavlklkgykaallslavsviiallvykmpvekvlaavlkgalsgllpialviiaavflyklsvksgafeiirksilsispdrr 100
                    +a+vPI++++l+l+v++l + +a++l  +++ + + +v++ + ++v+aa+++g+l+ + +++++++ a+++ +  + sga+++ir+  + ispdrr
    EGE26987.1   4 FLAIVPIIIVFLLLVVMRLPAKYAMSLAYLATAALSYFVWQTSGNQVAAATIHGVLT-AVNVLFIVFSAILILNTLKYSGAINAIRQGFMDISPDRR 99 
                   689*****************************************************9.7799*********************************** PP

  Lactate_perm 101 iqvlligfafgaflEGaaGfGtpvAIsaalLvglGfkPlyaaglcLIantapvafGavGiPitagagatkls..................aleissl 179
                   +q+++++++fg ++EG +G+Gtp A++a+lL++lGf+ +   + +LI++++pv++GavG+P + g+++   +                  ++ is  
    EGE26987.1 100 VQMIIVAWLFGCLIEGSTGWGTPSAVAAPLLLALGFPAMACVMAVLIIQSTPVSYGAVGTPLLIGVNSGLENkddlaqalanigmdlpayIFNISGN 196
                   ************************************888888999*****************9999887666789***************9999999 PP

  Lactate_perm 180 vgiilvlislliplllvilld.....g..vkdiketfpavlvsglsfaiaqflisnvlGpelpsilgalvslvilalflka..fqpkeifrfagkee 267
                   vg+i+ ++ +lipl+l  +l      +  + +  +++p+ + +gl+f+i++ l+++++Gpelpsi+ga+v+l  ++ ++k+    pk++f+f  +e 
    EGE26987.1 197 VGMIHGMVGFLIPLILCGFLTlffgqKrsFTEGLKVAPFAIFAGLAFTIPYALTAKFIGPELPSIVGAVVGLSLVIPAAKRgfLTPKQTFDFGPRES 293
                   9999999999999887544431111123566667899**********************************99999999988579******977665 PP

  Lactate_perm 268 skeksel............kaakilkAlsPfvllvavivltsipllkalfeeggllatkllsleleelsklilkikpiveeatalevvfkfkllssp 352
                    +++                ++++++A+sP++l+++++++t+  ++  l +   +l+   +           +   +i++    +++  k +ll+sp
    EGE26987.1 294 WEKEWVSeftitdstsdvaPKFSVIRAFSPYLLIITILIITR--TIAPLKA---WLTSDAV----------SIVFANILG----TNITNKTQLLYSP 371
                   444433367899999999999********************9..6655555...8888855..........334566777....888999******* PP

  Lactate_perm 353 gtiillaavlsiavlklsskdalkvlketlkelklpilaiilvlalanlmnvsG...........lsktlalalae.tGsaftlfspllGalGvflt 437
                   g ++ll+ +l i+++ ++ + ++k+  e+ k +  ++ a+ + + ++++  +sG           + k+la + a+    +++l+sp +G lG+f++
    EGE26987.1 372 GGVLLLVSILCIFIFGMKGNMVKKSWSESGKTMLAAAPALLFSVPMVQVFINSGtspdaavqilaMPKVLAASAAQaFEGMWPLVSPWIGSLGAFIA 468
                   ****************************************************************************87789**************** PP

  Lactate_perm 438 GSdtvsNllFgslQletaeqigl...sevlllaantvGgvvgkmispqsiaiacaavglvgkEsdllrktviysliyliivgvv 518
                   GS+tvsN++F+++Q  ta+qigl   + + ++++++vGg+ g+mis++++++aca+vglv++E+ ++rkt+i + +y+i +g++
    EGE26987.1 469 GSNTVSNMMFSHFQWGTATQIGLgvmDAAKVVSLQAVGGAAGNMISVHNVVAACAVVGLVNREGYVIRKTLIAMSYYVIQAGLI 552
                   **********************722256789************************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4044.74
//
Query:       EGE26988.1  [L=335]
Description: catabolite repression control protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-17   63.1   0.7    3.5e-17   62.7   0.7    1.1  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
      0.001   18.9   0.3     0.0087   15.9   0.3    2.3  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.7   3.9e-21   3.5e-17       2     233 .]      78     326 ..      77     326 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 3.9e-21
                    EEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSSS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   2 twNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpltslfrrtfiefndl 97 
                    + Nvng    a++    ++   ++l+ ++aDv+++QE +  ++++++      g++++          +g+ g+a++sr p+ s+   +  +f+  
     EGE26988.1  78 SINVNGL--RAAE----KKGFFEWLAVSNADVVCIQESRITHEQWTDKFRPK-GWHTHLF----AAQKAGYAGVAIYSRLPFVSV--VDGLGFDL- 159
                    679***5..4455....999*****************999998888877764.3333333....3679**************999..22222222. PP

                    SGCEEEEEEEEEEEEEEE...............................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGB CS
                    xxxxxxxxxxxxxxxxxx...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  98 vaalrreplaakleqlni...............................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsddds 162
                                                                      s+  ++ +r+  +l   + ++   +d+++++iv+GD N ++   d 
     EGE26988.1 160 -----------------AdsqgrficaqfdlsaqgidhpvyiaslylpsGSSGEEAQARKDLFLEKYRHILKQWRDENKSLIVCGDYNIVHKRIDI 238
                    .................135555566666777777799********************************************************** PP

                    SCGHHHHHHCTTTH...............H.........SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxx...............x.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 163 rvlrtrglalapap...............v.........glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                     ++  +++a    p               v         +  + +++++  +++++ g+r+D+   sp+++++++     +       + ++SDH
     EGE26988.1 239 KNWSGNQKASGCLPherawldhiydelgyVdtfrvvrkdADIYSWWSNRGQARAKNVGWRIDYHACSPDWKKRTLNAWVYK-------DSWFSDH 326
                    **************999988877776655166677899*****************************98888877666555.......57***** PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   9.7e-07    0.0087       1     118 [.     182     329 ..     182     330 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.7e-07
  Exo_endo_phos_2   1 lliisvYippsd...........elenlestlekllselkspkiiilGDfNakhp.....lWgsedtds......sargeeLiefleehsl.sl 71 
                      ++i+s+Y p  +            le++ + l++  +e+k  ++i++GD N  h+     +W+++++ s      +a  +++++ l   +  ++
       EGE26988.1 182 VYIASLYLPSGSsgeeaqarkdlFLEKYRHILKQWRDENK--SLIVCGDYNIVHKridikNWSGNQKASgclpheRAWLDHIYDELGYVDTfRV 273
                      5899999999999999988655555566666666666666..9********9995333337999887779986443333445444443333033 PP

  Exo_endo_phos_2  72 lnllksgptfkssng.......sstiDltltsdnlals..kleleeedlgSDHrpi 118
                      + +      ++s++g          iD    s++  ++  + + +++ + SDH p+
       EGE26988.1 274 VRKDADIYSWWSNRGqaraknvGWRIDYHACSPDWKKRtlNAWVYKDSWFSDHAPV 329
                      35555557777777777775545569999999999888888899999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2595.43
//
Query:       EGE26989.1  [L=238]
Description: TetR family transcription regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-07   28.7   0.0    1.8e-06   27.7   0.0    1.5  1  TetR_N    Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.081   13.0   0.0       0.19   11.8   0.0    1.7  1  HTH_29    Winged helix-turn helix
       0.12   12.2   0.1        1.3    8.8   0.0    2.4  2  DUF2239   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.9e-10   1.8e-06       9      46 ..      29      66 ..      28      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2.9e-10
                HHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  9 faerGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                ++ +Gy++ ++r++ +++Gv + a+Yr+F+++e L +a
  EGE26989.1 29 MSGQGYSSISLRQVTREVGVVPTAFYRHFDDMESLGKA 66
                5679*****************************99655 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.1e-05      0.19       4      46 ..      24      69 ..      23      84 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.1e-05
      HTH_29  4 allllaeGvs....tvsqiAkllglsrrtvyrwlkrfeegGlaalld 46
                +l l+  G++    + +q+ + +g+ ++ +yr+ +++e  G a l +
  EGE26989.1 24 VLDLCMSGQGyssiSLRQVTREVGVVPTAFYRHFDDMESLGKA-LVE 69
                78889999999999***************************54.443 PP

>> DUF2239  Uncharacterized protein conserved in bacteria (DUF2239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.068   4.1e+02     103     131 ..      70      98 ..      38     108 .. 0.78
   2 ?    8.8   0.0   0.00021       1.3      94     120 ..     109     135 ..     102     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.068
     DUF2239 103 aqpgGaSvaLRkLvdearraeaekdrara 131
                 +  gGa ++LR+ ++  r+++ +++ a++
  EGE26989.1  70 DELGGALATLREHMQLGRKRSFDRQIAKS 98 
                 55699999999999999998888776665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00021
     DUF2239  94 LprhWeWLaaqpgGaSvaLRkLvdear 120
                  pr W+++a+ + G S a+R+ ++e  
  EGE26989.1 109 QPRYWQFIASERFGGSEAVRRAINEQI 135
                 59*********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1773.35
//
Query:       EGE26990.1  [L=43]
Description: hypothetical protein EA1_04070 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 349.62
//
Query:       EGE26991.1  [L=157]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.4   0.1       0.17   11.9   0.1    1.3  1  DUF4995   Domain of unknown function


Domain annotation for each model (and alignments):
>> DUF4995  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   9.5e-06      0.17       1      27 [.       1      27 [.       1      50 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.5e-06
     DUF4995  1 mkkklllafaaaaialasCqtspkeey 27
                m +kllla + aa++l++C++ + e  
  EGE26991.1  1 MNQKLLLASVVAALTLTACSKPADESS 27
                899****************98755544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1169.94
//
Query:       EGE26992.1  [L=363]
Description: GTP-dependent nucleic acid-binding protein EngD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-39  134.2   0.0    2.9e-39  133.1   0.0    1.6  1  YchF-GTPase_C  Protein of unknown function (DUF933)
    7.4e-23   80.8   0.1    2.4e-22   79.2   0.0    1.9  2  MMR_HSR1       50S ribosome-binding GTPase
    2.2e-06   27.3   0.0    5.5e-06   26.0   0.0    1.6  1  FeoB_N         Ferrous iron transport protein B
     0.0047   17.0   0.1      0.029   14.4   0.0    2.2  2  TGS            TGS domain
  ------ inclusion threshold ------
       0.12   12.4   0.1        1.7    8.7   0.1    2.9  1  Dynamin_N      Dynamin family


Domain annotation for each model (and alignments):
>> YchF-GTPase_C  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.0   8.1e-43   2.9e-39       1      84 []     279     362 ..     279     362 .. 0.99

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 8.1e-43
  YchF-GTPase_C   1 LitffTaGekevraWtikkgttapqaAgviHsDfekgFiraevikyedlvelgseaaakeagklrlegkdyvvqdgDiilfkfN 84 
                    L+t+fTaG kevraWt+  g+tap+aAgviH+Dfe+gFiraevi y+d++e+g+e+ a +agk rlegk+y+vqdgD+++f+fN
     EGE26992.1 279 LQTYFTAGVKEVRAWTVPVGATAPEAAGVIHTDFERGFIRAEVIGYDDFIEYGGEKGAAAAGKSRLEGKTYIVQDGDVMHFRFN 362
                    89*********************************************************************************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   6.6e-26   2.4e-22       2      87 ..       5     116 ..       4     153 .. 0.78
   2 ?   -1.6   0.0      0.79   2.8e+03      66      96 ..     221     250 ..     180     258 .. 0.65

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 6.6e-26
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.................ielvDtpGliegaseekglgkaflalee.adlillv 82 
                 ++ivG pNvGKStL+nalt++   ++++p++T+d+n+g v + +++                 +e+vD++Gl+ gas+++g+g++fla+++ +d+i++v
  EGE26992.1   5 CGIVGLPNVGKSTLFNALTKAGIAAENFPFCTKDPNTGIVPVPDPRlkalaaivnpertiptsMEFVDIAGLVAGASKGEGMGNQFLANIReTDAIAHV 103
                 79*******************999**************9984432255666666666666777********999**************88779****** PP

                 EETT........T CS
    MMR_HSR1  83 vdas........e 87 
                 v++         +
  EGE26992.1 104 VRCFdddnvihvD 116
                 *998644443331 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.79
                 HHHHHHHHHCTSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1  66 lgkaflaleeadlillvvdaseeklkpldee 96 
                   ++f+++e+a +++l+ +++ +++++ldee
  EGE26992.1 221 AVREFANNENAIVVALCNQIE-AEIAQLDEE 250
                 455666555544444444433.335555544 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.5e-09   5.5e-06       3      42 ..       5      44 ..       3      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.5e-09
                EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEE CS
      FeoB_N  3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegkl 42
                + +vG pnvGk+tlfnalt+a     N+p  t + ++g +
  EGE26992.1  5 CGIVGLPNVGKSTLFNALTKAGIAAENFPFCTKDPNTGIV 44
                679**************************99999888766 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.63   2.2e+03      16      31 ..     230     245 ..     223     246 .. 0.83
   2 !   14.4   0.0   8.1e-06     0.029      12      55 ..     294     356 ..     283     359 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.63
                 TB-HHHHHHHHSTTHH CS
         TGS  16 gatveDfAykIhrsla 31 
                 +a v+ ++++I  ++a
  EGE26992.1 230 NAIVVALCNQIEAEIA 245
                 6778889***999987 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8.1e-06
                 EEETTB-HHHHHHHHSTTHHHHEEEEEECS...................EEEETTSBB-SSEE CS
         TGS  12 dlprgatveDfAykIhrslakkfiyAlVnG...................qrvgldhvLedgdv 55 
                 ++p gat+ ++A  Ih+++ + fi A V G                   ++ g ++ ++dgdv
  EGE26992.1 294 TVPVGATAPEAAGVIHTDFERGFIRAEVIGyddfieyggekgaaaagksRLEGKTYIVQDGDV 356
                 399***************************999999999999999999999999999999998 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00046       1.7       3      36 ..       7      40 ..       6     257 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00046
                EEEBTTTTHHHHHHHHHTS--S---SSS---S-E CS
   Dynamin_N  3 vvGsqSsGKSSvlnaLlgedilprgpnptTrrpl 36
                +vG  + GKS++ naL+++ i       +T  p+
  EGE26992.1  7 IVGLPNVGKSTLFNALTKAGIAAENFPFCTKDPN 40
                6888899***********9999988888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2546.86
//
Query:       EGE26993.1  [L=143]
Description: nucleoside diphosphate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-54  181.8   0.0    6.3e-54  181.6   0.0    1.0  1  NDK       Nucleoside diphosphate kinase


Domain annotation for each model (and alignments):
>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   0.0   3.5e-58   6.3e-54       1     135 []       4     138 ..       4     138 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.6 bits;  conditional E-value: 3.5e-58
                 EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEECE-HHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSTTTSSTTS CS
         NDK   1 ertlvliKPdavkrgligeiisrleekglkivalkmlrlteeqaeehYaehkgkpffeelvefmtsgpvvalvlegedaiekvreliGatnpaeaapgt 99 
                 ertl++iKPdav +++ig+ii+r+e++glk va+k  +l++++ae +Yaehk++ ff +lv+fmtsgpvv+ vlege+a+ + re++Gatnp+eaa+gt
  EGE26993.1   4 ERTLSIIKPDAVGKNHIGDIIARFEKAGLKPVAMKYKHLSQADAEGFYAEHKERGFFGDLVSFMTSGPVVVSVLEGENAVLAHREILGATNPQEAAQGT 102
                 89************************************************************************************************* PP

                 HHHHH-SSSTT-SEEE-SSHHHHHHHHHHHSTGGGS CS
         NDK 100 iRadfgvslgeNlvHgSdseesaereiklfFkeeei 135
                 iRadf+vs++eN+ HgSds +saerei++fF ++e+
  EGE26993.1 103 IRADFAVSIDENAAHGSDSVASAEREIAYFFGDDEV 138
                 *******************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1062.33
//
Query:       EGE26994.1  [L=117]
Description: hypothetical protein EA1_04090 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 937.47
//
Query:       EGE26995.1  [L=214]
Description: putative hydrolase alpha/beta family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-11   44.1   0.3      6e-09   35.9   0.1    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.5e-08   34.2   0.2    1.7e-06   27.5   0.1    2.1  2  Hydrolase_4    Serine aminopeptidase, S33
    7.2e-06   26.8   0.1    0.00026   21.7   0.0    1.9  2  Abhydrolase_6  Alpha/beta hydrolase family
      4e-05   23.2   0.6     0.0033   16.9   0.2    2.1  2  Peptidase_S9   Prolyl oligopeptidase family
     0.0049   16.8   0.0     0.0071   16.2   0.0    1.2  1  Abhydrolase_3  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.029   14.3   0.0      0.045   13.7   0.0    1.4  1  UPF0227        Uncharacterised protein family (UPF0227)
      0.051   13.2   0.0       0.12   12.1   0.0    1.5  1  FSH1           Serine hydrolase (FSH1)
      0.082   12.5   0.0       0.52    9.8   0.0    1.8  2  LIDHydrolase   Lipid-droplet associated hydrolase
       0.11   12.2   0.0       0.22   11.3   0.0    1.4  1  Abhydrolase_5  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1     3e-12     6e-09      28      93 ..      60     124 ..      41     157 .. 0.89
   2 !    6.8   0.0    0.0023       4.5     213     251 ..     160     196 ..     147     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 3e-12
                    T.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1  28 d.gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaae 93 
                    d g dv+ ++ rGvg+S+    +   d ++ +   +l+++l +++ +kl+l G+S+GG +a+ +a++
     EGE26995.1  60 DgGMDVLRFNFRGVGRSTGQTGT--GDGELEDALTVLRYALKHTKARKLWLGGFSFGGYTAARLASL 124
                    4599*******************..99*************************************987 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0023
                    EEEEEEETTCSSSCHHHHHHHHHC..HTSEEEEEEETCSSS CS
  Abhydrolase_1 213 ptlvisgtsDplvppkaledlaql..lpkkrlvvisdagHl 251
                     t++i+g++D lv+p++l ++a+   +p     ++  +gH+
     EGE26995.1 160 HTFMIYGDQDELVSPEHLAQFAEEreIPT----TVLSTGHF 196
                    699******************99844444....55555555 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   8.5e-10   1.7e-06      28     111 ..      59     146 ..      41     160 .. 0.84
   2 !    5.3   0.0     0.005       9.9     194     233 ..     161     199 ..     150     205 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 8.5e-10
  Hydrolase_4  28 aaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl...lrypd....kvaglilsaPal 111
                   + G++v+ ++ rG Grs g++g     d  ++D+ ++++ + ++ + ++l l G S GG++a++++   +++++    +++ l l+aP +
   EGE26995.1  59 RDGGMDVLRFNFRGVGRSTGQTG---TGDGELEDALTVLRYALKHTKARKLWLGGFSFGGYTAARLAslmTDNEEffdvNLHNLALIAPSV 146
                  4679**************99999...778889*********************************99765555557766777888888875 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.005
  Hydrolase_4 194 llllhGeaDkvvdpeasrelyerlgskdktlklypglyHe 233
                  +++++G++D++v+pe  ++++e+      t+    +++H 
   EGE26995.1 161 TFMIYGDQDELVSPEHLAQFAEEREI-PTTVLSTGHFFHG 199
                  689*****************998776.4555555566665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.3e-07   0.00026      22     105 ..      57     152 ..      34     162 .. 0.69
   2 ?    3.5   0.0     0.045        91     174     210 ..     162     198 ..     151     201 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.3e-07
                    HHCCT.CEEEEE--TTSTS-....GGCS--HHHCHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC............EE..EEES-..-- CS
  Abhydrolase_6  22 llaag.vhvlapDlpGhGrs....dpppldledladl.aalldelaagggpvvlvGHSlGGalalaaapla..........lvvg..vlldpppta 99 
                    + ++g   vl + ++G Grs     + + +led++++ + +l + +  +++ +l G S+GG+ a+++a+l           l      l++p   +
     EGE26995.1  57 FCRDGgMDVLRFNFRGVGRStgqtGTGDGELEDALTVlRYALKHTK--ARKLWLGGFSFGGYTAARLASLMtdneeffdvnL--HnlALIAP--SV 146
                    445556455********96644446666777776666566777775..8999**************7777799999976543..25699999..44 PP

                    --TTTS CS
  Abhydrolase_6 100 lpagll 105
                     + g++
     EGE26995.1 147 MRVGMA 152
                    444443 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.045
                    EEE.CTT-CHHHHCHHCCCH.STTEEETCE...SSS-HH CS
  Abhydrolase_6 174 lvl.ggeDplvprllerlla.qagarlpvvlpgaGHlph 210
                    +++ g++D+lv +   +l++ ++ +++p+++  +GH++h
     EGE26995.1 162 FMIyGDQDELVSPE--HLAQfAEEREIPTTVLSTGHFFH 198
                    34436999977733..555555999999********998 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   1.6e-06    0.0033       9      91 ..      57     134 ..      49     142 .. 0.79
   2 !    4.6   0.0    0.0099        20     142     167 ..     157     182 ..     146     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
                   HHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHH...HHHHH-GGG-SE CS
  Peptidase_S9   9 lladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltg...aalnqrpdlFka 91 
                   +++d G+ v+  n+rG g      +  g+  +g+ e++D +++++++ k   +++++l + G S+GGy+++    +++++ ++F++
    EGE26995.1  57 FCRDGGMDVLRFNFRGVG------RSTGQTGTGDGELEDALTVLRYALK--HTKARKLWLGGFSFGGYTAArlaSLMTDNEEFFDV 134
                   566777778888888887......7889999****************66..5788**************86221345577777765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0099
                   ---EEEEEEETT-SSS-THHHHHHHH CS
  Peptidase_S9 142 aypplLlihGlaDdrvppaealklva 167
                   +  ++++i G++D+ v p++ +++++
    EGE26995.1 157 QADHTFMIYGDQDELVSPEHLAQFAE 182
                   66799******************986 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.6e-06    0.0071      49     110 ..      87     146 ..      84     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.6e-06
                    HHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---...EEEEEEESE-S CS
  Abhydrolase_3  49 vedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepk...vagqvliyPvt 110
                    +edal++lr+++++     ++++++ l+G S GG  aa +a  + d++e     +  ++li P +
     EGE26995.1  87 LEDALTVLRYALKH-----TKARKLWLGGFSFGGYTAARLASLMTDNEEFFdvnLHNLALIAPSV 146
                    79***********9.....89********************777776533345599999999954 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.2e-05     0.045      44      92 ..      89     137 ..      83     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
     UPF0227  44 qalkeleklvaelgddnillvGssLGGyyatrlgerfglrqvllnPalk 92 
                 +al+ l  ++++++++++ l G s GGy+a+rl+ ++  +   +  +l+
  EGE26995.1  89 DALTVLRYALKHTKARKLWLGGFSFGGYTAARLASLMTDNEEFFDVNLH 137
                 678888899999999*******************988766655555555 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.8e-05      0.12      85     193 ..      86     190 ..      75     199 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.8e-05
        FSH1  85 gleesldavkdyikengpfdG.iiGFSqGaalaallaslleellkeashpsl.kfailv.sGfkleepkyeeyyeedkiqtptLhvlGelDtvvdeers 180
                 +le++l +++ ++k ++  +  + GFS G+  aa+lasl+   ++   + +l + a+++ s +++   + ++  + d     t++++G++D++v++e  
  EGE26995.1  86 ELEDALTVLRYALKHTKARKLwLGGFSFGGYTAARLASLMTDNEEFF-DVNLhNLALIApSVMRVGMASLRW--QAD----HTFMIYGDQDELVSPEHL 177
                 5666666666666666663331559**************99977654.444424443331444444444444..233....599***********9999 PP

        FSH1 181 eaLaeafknsskv 193
                  ++ae  +  ++v
  EGE26995.1 178 AQFAEEREIPTTV 190
                 9999877764444 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00026      0.52      68     128 ..      90     153 ..      84     165 .. 0.82
   2 ?    1.0   0.0      0.13   2.6e+02     226     262 ..     161     197 ..     154     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00026
  LIDHydrolase  68 kedflkellekaksekdvklilvGHSvGaYialevlkrlsers......ikkvvlLfPtiediakSp 128
                   +  +l+++l+   ++k +kl l G S G Y a ++++ + +++       +++ l+ P ++++  ++
    EGE26995.1  90 ALTVLRYALK---HTKARKLWLGGFSFGGYTAARLASLMTDNEeffdvnLHNLALIAPSVMRVGMAS 153
                   5667888886...679*********************888888899999999999999999976655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.13
  LIDHydrolase 226 lvfyfgkkDhWvpeetrdelkellgeeklevdekgip 262
                    ++++g++D+ v+ e+  +  e+++ ++ ++++ ++ 
    EGE26995.1 161 TFMIYGDQDELVSPEHLAQFAEEREIPTTVLSTGHFF 197
                   5889***************999999888887665555 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011      0.22      52     124 ..      99     182 ..      91     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
  Abhydrolase_5  52 eapklekfvvgGhslGGvvasrfaa...eee.....kiegvvflasYPe...kdelselskkvlsivgteDgvlnvkslekakk 124
                    ++ k +k+ +gG s+GG  a+r+a+   ++e     +++ + ++a   +     +l  ++ +++ i+g++D++++ ++l + ++
     EGE26995.1  99 KHTKARKLWLGGFSFGGYTAARLASlmtDNEeffdvNLHNLALIAPSVMrvgMASLRWQADHTFMIYGDQDELVSPEHLAQFAE 182
                    4778899****************9887744312223466777777655533345677778889999999999999998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1610.46
//
Query:       EGE26996.1  [L=366]
Description: AFG1-like ATPase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.3e-127  423.9   0.1   4.9e-127  423.7   0.1    1.0  1  AFG1_ATPase  AFG1-like ATPase
  ------ inclusion threshold ------
      0.059   13.2   0.2       0.35   10.7   0.0    1.9  2  Bac_DnaA     Bacterial dnaA  protein


Domain annotation for each model (and alignments):
>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.7   0.1  5.5e-131  4.9e-127       2     361 ..       5     361 ..       4     362 .. 0.98

  Alignments for each domain:
  == domain 1  score: 423.7 bits;  conditional E-value: 5.5e-131
  AFG1_ATPase   2 tprqryekelqrgeivadaaqaeavealdrlteelaaqdlarkssalgklfgrkrksvepvrglYlwGgvGrGKtylmdlffeslpvekkrrvhfhaf 99 
                  tp +ry+++l++g++ +da+q +av+ +d+l++e+++++     + +  lf+ k+     ++glY+wGgvGrGKt++md+f+eslp+++k r+hfh+f
   EGE26996.1   5 TPLERYQAALATGDFSEDAVQLAAVTYMDNLYHEIIKSQDSSGGGWFSSLFKSKP---VMPKGLYMWGGVGRGKTWMMDMFYESLPIKRKMRMHFHHF 99 
                  899*******************************999998888789999999998...579************************************* PP

  AFG1_ATPase 100 marvhdeltklrkekdplaivadrlaeearvlCfDEfevsDiadamllsrLleaLfargvtlvaTSNiaPedLykdglqrqrFLpaIdlleshlevle 197
                  m+rv+ el +l+++ dpl++vad + +ea v+CfDEf+vs ++dam+l+ L++ Lf+rg+tlvaTSNi P  Lyk+g++r+rFLpaI+ +e+h++v++
   EGE26996.1 100 MQRVQRELVALQGQADPLKKVADIIHQEAVVICFDEFFVSNVSDAMILGDLFSMLFDRGITLVATSNIEPSGLYKNGIHRDRFLPAIAQVEKHTTVMN 197
                  ************************************************************************************************** PP

  AFG1_ATPase 198 vdggvDYRlrklrqaevylapldeaaeaaldklfkeltsgepeaestlevkaRklrvraaagdlvrfsfaelceaarsqsdYlalaerfhtvlledVp 295
                  +d+g DYRlr l+qa++y +pl + +++ l++ f++l+ g+  ++s + + +R++ + + +++++ ++f+ lc ++rs+ d++++a+ f tv++++Vp
   EGE26996.1 198 IDAGIDYRLRLLKQAKLYSSPLTDDTKDWLSERFDTLAGGQTISTSPIVIGGRNIDIIKRTETMLLADFRALCMQPRSAADFIEIANDFDTVMVDNVP 295
                  ************************************************************************************************** PP

  AFG1_ATPase 296 vltkakedaarRfiaLvDelYdadvklvvsaevaleelyeagrlefefeRtaSRLlelqsedylar 361
                   l+ +  d  rRfi LvDe+Yd+ vkl++ ae+ +  ly++++l+fe eRt SRLle+qse+yla 
   EGE26996.1 296 ALNDTLMDPTRRFIYLVDEFYDRRVKLLIRAEQSILTLYQGEKLAFEIERTRSRLLEMQSEEYLAE 361
                  ***************************************************************986 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.9e-05      0.35      37     144 ..      65     172 ..      58     188 .. 0.71
   2 ?   -0.0   0.1     0.074   6.6e+02      83     139 ..     271     328 ..     259     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.9e-05
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHT..T-HHHHHH...HHTT-SEEEEE-GGGGTT-HHHHHHHHHHHHHHHTTT CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrd..kkaeefke...klrkvDvLliDDiqflagkektqeelfhtfnalleeg 130
                 l+++g+vG Gkt +++    e l  ++++r   ++  +F++++ + l     +a+ +k+    + +  v++  D +f+ +  +   +l  +f +l++ g
  EGE26996.1  65 LYMWGGVGRGKTWMMDMFY-ESLPIKRKMR---MHFHHFMQRVQRELVAlqGQADPLKKvadIIHQEAVVICFD-EFFVSNVSDAMILGDLFSMLFDRG 158
                 89************98654.3344445555...55566666665554432244555555111555666666666.555566668899************ PP

                 -EEEEEESS-TTT- CS
    Bac_DnaA 131 kqvvlssDrsPkel 144
                   +v +s+ +P+ l
  EGE26996.1 159 ITLVATSNIEPSGL 172
                 ********999987 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.074
                 HHTT-HHHHHHHHTT-SEEEEE-GGGGTT-H.HHHHHHHHHHHHHHTTT-EEEEEESS CS
    Bac_DnaA  83 lrdkkaeefkeklrkvDvLliDDiqflagke.ktqeelfhtfnalleegkqvvlssDr 139
                 ++ ++a++f e   + D +++D++  l++   +    ++ +++++++   ++++ +++
  EGE26996.1 271 MQPRSAADFIEIANDFDTVMVDNVPALNDTLmDPTRRFIYLVDEFYDRRVKLLIRAEQ 328
                 56678889999999999******99998764145677888888888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2699.30
//
Query:       EGE26997.1  [L=191]
Description: putative nitroreductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-26   94.0   0.0    1.2e-26   93.8   0.0    1.0  1  Nitroreductase  Nitroreductase family


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   6.6e-31   1.2e-26       1     169 [.       9     169 ..       9     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 6.6e-31
                     HHH--B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEE CS
  Nitroreductase   1 irkRrSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvliv 95 
                     i +RrSi +++   + ++el+ +leaa+ aP ++ l pwrf v+ ++e++ ++++ +l+++ ++ a+  ++ +++   + +k   +  +ap++iv
      EGE26997.1   9 IHQRRSIGNLSLPMPNHAELKAVLEAAMVAPDHKQLKPWRFWVL-TGETLIEFGQVLLSAAEHEAASCGEILDEV---AIKKILNMPLRAPMIIV 99 
                     679*****************************************.9***************************98...99*************** PP

                     E---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE CS
  Nitroreductase  96 ivatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavG 169
                     i    ++  +++++    ++ll+aga+aqn+lLa+++lG+ s++ +g+    +ev++ +g+ ++  i +li  G
      EGE26997.1 100 I----ATEYQYHKKVPPFEQLLSAGAVAQNMLLALESLGYRSVWRTGPLCNTPEVKDYFGVTKQNTICGLIYTG 169
                     *....8888889999999*******************************99999*********99999999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1422.31
//
Query:       EGE26998.1  [L=442]
Description: NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-48  162.2   1.1    8.5e-48  162.2   1.1    1.8  2  NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogen
    1.7e-46  158.1   0.0    3.2e-46  157.2   0.0    1.5  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
    3.3e-11   43.1   0.0    6.3e-11   42.1   0.0    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
    1.2e-08   35.4   0.0    3.8e-08   33.8   0.0    1.9  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    1.1e-05   25.7   0.0    3.5e-05   24.0   0.0    1.9  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0005   19.7   0.0     0.0017   18.0   0.0    1.9  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
     0.0058   17.0   0.0      0.024   15.0   0.0    1.9  2  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
     0.0091   15.0   0.0      0.015   14.3   0.0    1.3  1  PDH             Prephenate dehydrogenase
     0.0092   15.9   0.1      0.026   14.4   0.0    1.9  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.033   13.4   0.0      0.068   12.4   0.0    1.5  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      0.041   13.2   0.1       0.19   11.0   0.1    2.1  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase


Domain annotation for each model (and alignments):
>> NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.4     1e+04      94     112 ..      52      71 ..      43      79 .. 0.60
   2 !  162.2   1.1   5.2e-51   8.5e-48       1     137 [.     251     387 ..     251     390 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.4
                     HHHHC.C--HHHHHHHHHHH CS
  NAD_Gly3P_dh_C  94 ekeln.qvleGvetakevye 112
                     +k+ + q +e +++++++ +
      EGE26998.1  52 KKKKSaQLVESMQATEQIAS 71 
                     34333367777777776655 PP

  == domain 2  score: 162.2 bits;  conditional E-value: 5.2e-51
                     -HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHTSSGGGGGSTTTHHHHHHHHHSCT.HHHHHHHHHHCT--HHHHHH CS
  NAD_Gly3P_dh_C   1 DviGvelagalKNviAiaaGivdglglgdntkaalitrglaEmarlakalgakpetflglaglgDlivtctsgksRNrrfGeelgkgesleeiek 95 
                     D+ Gvel+galKN++Aia+G++ ++++g+ntka+l+tr+laEm+r++ a+ga+p tflgl+g+gDl++tc+s  sRN+r+G++lg+g sle ++k
      EGE26998.1 251 DIKGVELGGALKNIYAIAMGMAAAYDVGENTKAMLLTRALAEMSRFGVAVGADPLTFLGLSGVGDLYATCSSVLSRNYRIGYMLGQGISLEHAIK 345
                     99********************************************************************************************* PP

                     HHCC--HHHHHHHHHHHHHHHTT.G.HHHHHHHHHHHS---H CS
  NAD_Gly3P_dh_C  96 elnqvleGvetakevyellkkkgvemplleavykilyegksp 137
                     +l+q++eGv+t+ +v++ +k+ g+ mp+++a++++lye+ks+
      EGE26998.1 346 KLGQTAEGVNTILQVHSRAKALGIYMPITHALHAVLYENKSA 387
                     ***************************************985 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.2   0.0     2e-49   3.2e-46       3     154 ..      79     229 ..      77     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 157.2 bits;  conditional E-value: 2e-49
                     EEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT- CS
  NAD_Gly3P_dh_N   3 avlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllkkka 97 
                     a+lG+Gs+Gta+A++ a+ng++ +lwvr++ +++++++++ n+kyLp++kl+e l+++ dl++a++g+d+i+++vPs+a+re+l+++k+++ +++
      EGE26998.1  79 AFLGGGSFGTAMANLAAKNGCDATLWVRDKRTVKSLHKTRINKKYLPNHKLDERLKFSHDLKTAVAGVDVIFVAVPSSAFREMLTNIKPFI-THQ 172
                     89****************************************************************************************9.778 PP

                     EEEE---SEET.TTEEHHHHHHHHH-S--EEEEESS--HHHHHTT--EEEEEEES-H CS
  NAD_Gly3P_dh_N  98 ilvsliKGieegtlkllsevieeelkeekvavlsGpslAeEvakgkptavviaskdk 154
                     ++vsl+KG+e++t  ++s++i+e+l+e + +v+sGp+lA E+++++pta+vias+++
      EGE26998.1 173 AVVSLTKGMEKETFAMMSDIIQEVLPEVNFGVMSGPNLAVEIMDNMPTATVIASASE 229
                     89***************************************************9865 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   3.9e-14   6.3e-11       2     108 ..      79     184 ..      78     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 3.9e-14
                 EEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEEE CS
        ApbA   2 ailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvvl 99 
                 a lG G+ G+ +a   ak+g+d tl++r++  +++l+k+ ++ +    +++l ++ ++s++ k   + +d+++v+v++    e+l +ikp+++++ +v+
  EGE26998.1  79 AFLGGGSFGTAMANLAAKNGCDATLWVRDKrTVKSLHKTRINKKYLP-NHKLDERLKFSHDLKTAVAGVDVIFVAVPSSAFREMLTNIKPFITHQ-AVV 175
                 679********9998888************99999998888766666.888888888888877789****************************8.*** PP

                 EESSSSCHH CS
        ApbA 100 llqNGlghe 108
                 +l  G+++e
  EGE26998.1 176 SLTKGMEKE 184
                 ******988 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   2.3e-11   3.8e-08       2      96 ..      78     179 ..      77     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.3e-11
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC..........-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHT CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg..........vkvtavdneeaaeeadvvvlavkpedveevlselakdalk 87 
                    ++++G+G++g a+a+ ++++g  +  ++v  +r+ +++ +++ + +           k ++ d ++a++  dv+++av+ +++ e+l+++ k    
     EGE26998.1  78 FAFLGGGSFGTAMANLAAKNG-CDATLWVRDKRTVKSLHKTRINKKylpnhklderLKFSH-DLKTAVAGVDVIFVAVPSSAFREMLTNI-KPFIT 170
                    69*******************.77777778899999998888555578*******777777.****************************.88899 PP

                    TSEEEEESS CS
  F420_oxidored  88 gklvisvla 96 
                    ++ v+s + 
     EGE26998.1 171 HQAVVSLTK 179
                    999999875 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.1e-08   3.5e-05       2      85 ..      78     174 ..      77     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.1e-08
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT..............EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg..............akaaesieelvasldvvitmvkagkavdeviegllealkkg 83 
                    ++f+G G  G+ ma+  +k+g++ +++ r+k  v++l +++              +k  ++++ +va++dv+++ v++ +a +e+++++++ +  +
     EGE26998.1  78 FAFLGGGSFGTAMANLAAKNGCDATLWVRDKRTVKSLHKTRinkkylpnhklderLKFSHDLKTAVAGVDVIFVAVPS-SAFREMLTNIKPFITHQ 172
                    79**************************************999**********************************8.67899999988877666 PP

                    -E CS
  NAD_binding_2  84 di 85 
                    ++
     EGE26998.1 173 AV 174
                    55 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     1e-06    0.0017       2      88 ..      77     157 ..      76     218 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1e-06
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPs 88 
                       +++G G  G  +a + a+ g + ++   d+++v++l++ +i+      ++++ ++  ++rl+f+ d+++av+  dvif+aV+  +
      EGE26998.1  77 SFAFLGGGSFGTAMANLAAKNGCDATLWVRDKRTVKSLHKTRIN------KKYLPNHKLDERLKFSHDLKTAVAGVDVIFVAVPSSA 157
                     5678999*******************************998875......344444444899*********************8543 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.9   3.1e+03      62      90 ..      94     122 ..      88     129 .. 0.79
   2 !   15.0   0.0   1.5e-05     0.024      50      96 ..     126     175 ..     107     182 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.9
                     HHHTT-SEEEE-S--GGGGGS-HHHHHHC CS
  UDPG_MGDP_dh_C  62 ealkgadaiviltehdefkeldlaklkel 90 
                      a +g+da + + + +  k+l+  +++++
      EGE26998.1  94 AAKNGCDATLWVRDKRTVKSLHKTRINKK 122
                     57789999999999999999988877765 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.5e-05
                     G...BTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCC.SS-EE CS
  UDPG_MGDP_dh_C  50 e...ekgvevvdsleealkgadaiviltehdefkeldlaklkelm.kpavv 96 
                     +   ++++++ ++l++a++g+d+i ++++ + f+e+ l ++k  + ++avv
      EGE26998.1 126 NhklDERLKFSHDLKTAVAGVDVIFVAVPSSAFREM-LTNIKPFItHQAVV 175
                     02335699***************************7.88999888444444 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.2e-06     0.015      34      94 ..     135     194 ..      96     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.2e-06
                 SEEES-GGGGCCGSEEEE-S-GGGHHHHHHHHHHHS-TT-EEEE--S--CHHHHHHHHHCC CS
         PDH  34 deatddieavkeadivvlavPvevilevlkelaphlkedalitDvgsvKekvvreleellk 94 
                 +  +    av   d++++avP  +++e+l +++p + ++a++  + ++ ++    ++++++
  EGE26998.1 135 FSHDL-KTAVAGVDVIFVAVPSSAFREMLTNIKPFITHQAVVSLTKGMEKETFAMMSDIIQ 194
                 44444.3678889****************************99888888888888888877 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.8   7.9e+03      87     105 ..      46      64 ..      13      73 .. 0.57
   2 !   14.4   0.0   1.6e-05     0.026       3      88 ..      79     155 ..      77     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.8
                 -SSHHHHHHHHHHHHCCS- CS
     3HCDH_N  87 vEnlelKrkvfaelekiak 105
                 +E + lK+k  a+l + ++
  EGE26998.1  46 AELTGLKKKKSAQLVESMQ 64 
                 3333333333333333333 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.6e-05
                 EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHH.C-SEEEE-S-S CS
     3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeav.dadlviEavvE 88 
                 a +G G  G+ +a+++a++g++ +l  ++++++++ +++  +  +k   ++kl         +r++f+ dl++av ++d+++ av+ 
  EGE26998.1  79 AFLGGGSFGTAMANLAAKNGCDATLWVRDKRTVKSLHKTRIN--KKYLPNHKL--------DERLKFSHDLKTAVaGVDVIFVAVPS 155
                 779***********************9999988877665443..333333443........48999******99999**99999985 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.2e-05     0.068     118     189 ..      50     123 ..      12     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-05
                  TC..TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHH CS
                  xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 118 Gv.aenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaal 189
                  G+ +++  +lv++++ +e++ ++  + +++  GgG  G+ +A  +ak g+++tl  + +r + + ++ ++ + +
   EGE26998.1  50 GLkKKKSAQLVESMQATEQIASDIHQMSFAFLGGGSFGTAMANLAAKNGCDATLWVRDKRTVkSLHKTRINKKY 123
                  33667788899999999999999999***************************999988888677777777665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00012      0.19      25      79 ..      64     118 ..      44     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                   TTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHT CS
  2-Hacid_dh_C  25 sekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelg 79 
                   + ++   ++++++  + +G G+ G+a+a+++++ g++ + + r k++ ++ ++++
    EGE26998.1  64 QATEQIASDIHQMSFAFLGGGSFGTAMANLAAKNGCDATLWVRDKRTVKSLHKTR 118
                   445667889***************************9999999888555333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2997.31
//
Query:       EGE26999.1  [L=164]
Description: putative phosphohistidine phosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-12   45.1   0.0    1.8e-09   37.6   0.0    2.1  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   9.8e-14   1.8e-09       1      64 [.       3      63 ..       3      75 .. 0.93
   2 !    5.7   0.0   0.00058        10     137     167 ..     106     136 ..      92     148 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 9.8e-14
                EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT.S---EEEE-SSHHHHHHHHHHH CS
  His_Phos_1  1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag.epidaiysSplkRarqTaelia 64
                +++vRHG+ +   e         +Lt+ Gr q++++a++la+  ++d i++Sp+ Ra qTa++++
  EGE26999.1  3 VIFVRHGQAAPYCE----DDAGRDLTDFGRLQVQQTAQYLAKhYQLDLIIASPYNRADQTAKILL 63
                689********888....899999*****************999******************987 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.00058
                 TTTSEEEEEE-HHHHHHHHHHHHT--GGGGG CS
  His_Phos_1 137 hegetvlvVsHggvirallarllglpleelr 167
                  +++ v+vV+H  ++ +++arl +l+++ ++
  EGE26999.1 106 LDDKCVAVVCHMPIVASMVARLENLSPTSFE 136
                 45566********************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1193.97
//
Query:       EGE27000.1  [L=180]
Description: hypothetical protein EA1_04120 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-28   99.6   0.4    1.3e-28   99.3   0.4    1.1  1  UPF0054   Uncharacterized protein family UPF0054
  ------ inclusion threshold ------
       0.09   12.4   0.3       0.14   11.8   0.3    1.3  1  Astacin   Astacin (Peptidase family M12A)


Domain annotation for each model (and alignments):
>> UPF0054  Uncharacterized protein family UPF0054
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.4   1.5e-32   1.3e-28      22     128 .]      57     171 ..      22     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 1.5e-32
     UPF0054  22 ekle.evsvllvdneeirelnkeyrgkdkpTDVLSFpleeeeeeee......lGDivisvekakeqaeeyghslerelafllvHgllHllGYDHe.eee 112
                  +++ +vs+++v++++ r +n   rgkd++T+VLS+p e   e +       lG++v++ e++ ++a+e+++s+e++l++l++HgllHllG+DHe +++
  EGE27000.1  57 WHMPkSVSIYVVNHAQGRAVNLAARGKDYATNVLSYPSELPTEMTTllgeieLGELVLCHEVVLNEADEQNKSFESHLTHLIIHGLLHLLGFDHEiSDA 155
                 333379*******************************99999983368999********************************************99** PP

     UPF0054 113 eekeMeekeeeileel 128
                 ++ +Me+ e eil++l
  EGE27000.1 156 DADQMEGFEIEILAQL 171
                 *************986 PP

>> Astacin  Astacin (Peptidase family M12A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   1.6e-05      0.14      58     104 ..     115     159 ..     105     170 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.6e-05
                 CEE-SS--SSEEEEEE-CCC-SHHHHHHHHHHHHTB--GGGSTTGGG CS
     Astacin  58 ClssvgraggkqevslgkgCeklgiivHElmHalGffHeqsRtdrde 104
                 C   v ++  +q+ s++++   +  i+H l+H lGf He s  d d+
  EGE27000.1 115 CHEVVLNEADEQNKSFESHL--THLIIHGLLHLLGFDHEISDADADQ 159
                 55555556666666665544..45799***************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1406.44
//
Query:       EGE27001.1  [L=365]
Description: phosphate starvation-inducible protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-93  309.9   0.0    9.8e-93  309.3   0.0    1.3  1  PhoH           PhoH-like protein
    8.8e-09   35.3   0.0    1.6e-08   34.5   0.0    1.5  1  AAA_30         AAA domain
    1.8e-05   25.1   0.0    7.8e-05   23.1   0.0    2.1  1  AAA_19         AAA domain
     0.0031   17.8   3.1      0.033   14.5   0.0    3.0  3  AAA_22         AAA domain
     0.0097   15.7   0.0      0.031   14.0   0.0    1.8  1  IstB_IS21      IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.013   15.5   0.1      0.047   13.7   0.0    2.2  2  ResIII         Type III restriction enzyme, res subunit
      0.032   14.0   0.0        1.9    8.3   0.0    2.7  2  DEAD           DEAD/DEAH box helicase
      0.059   12.9   0.0       0.15   11.6   0.0    1.6  1  AAA_25         AAA domain
       0.11   11.9   7.4        6.6    6.2   0.0    3.4  4  UvrD-helicase  UvrD/REP helicase N-terminal domain
       0.25   11.8   3.0       0.51   10.8   0.1    2.8  3  AAA            ATPase family associated with various cellular


Domain annotation for each model (and alignments):
>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.3   0.0   5.5e-96   9.8e-93       2     205 .]     124     327 ..     123     327 .. 0.99

  Alignments for each domain:
  == domain 1  score: 309.3 bits;  conditional E-value: 5.5e-96
                 ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH CS
        PhoH   2 ikpktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelGflpgdleekvdpylrplydaLkdllgaekvekll 100
                 i p+  +Q+ey + +  +d+ f++GpaGtGKtylava+av++l++++++ri+l+rpaveage+lGflpgdl++k+dpylrplydaL+++lg ekv kll
  EGE27001.1 124 IIPRGYNQQEYTKKILISDVSFGVGPAGTGKTYLAVACAVDMLERGEIERILLVRPAVEAGEKLGFLPGDLTQKIDPYLRPLYDALYEMLGFEKVGKLL 222
                 78999********************************************************************************************** PP

                 HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------------THHHHHHTTT-TTEEEEE--GGG----HHHHH CS
        PhoH 101 ekgkievaplaymRGrTlndafvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlpkgkksGlaealevlknvegieivelkkkdvvRhplvkk 199
                 e+++ievaplaymRGrTln++fvilDEAQntt+eqmkmfltRlG++s++v+tGd+tq+dlp+g+ksGla+al++l+++++i+i++++++dvvRh+lv+k
  EGE27001.1 223 ERQVIEVAPLAYMRGRTLNNSFVILDEAQNTTPEQMKMFLTRLGFGSRAVITGDMTQVDLPRGHKSGLAQALQILSKIDEIHITRFDSNDVVRHHLVQK 321
                 *************************************************************************************************** PP

                 HHHHH- CS
        PhoH 200 ivkaye 205
                 iv+ay+
  EGE27001.1 322 IVQAYD 327
                 ****96 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   8.8e-12   1.6e-08       5     129 ..     130     281 ..     128     348 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 8.8e-12
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKttalkal.reaweaa.ggrviglAptgkaAkvLaeelgieastiakllkrlk.................... 81 
                 +Q++  +++l s+  v++ +GpAGtGKt++  a  ++++e+   +r++++ p  +a ++L+   g  ++ i+ +l+ l                     
  EGE27001.1 130 NQQEYTKKILISD--VSFGVGPAGTGKTYLAVACaVDMLERGeIERILLVRPAVEAGEKLGFLPGDLTQKIDPYLRPLYdalyemlgfekvgkllerqv 226
                 69999999*9999..9************98766648888887459****************87777777777777666677777778888888888888 PP

      AAA_30  82 ........grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQla 129
                          r r  +++ +i DEa  +  +q++ +l+++   g + ++ GD  Q +
  EGE27001.1 227 ievaplayMRGRTLNNSFVILDEAQNTTPEQMKMFLTRLGF-GSRAVITGDMTQVD 281
                 ******98334556679**********************99.***********974 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.3e-08   7.8e-05      10     140 ..     141     279 ..     131     282 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.3e-08
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae..............atTiHrlal.ldfddlltealelle. 92 
                 ++v + ++++GtGKT++ ++    ++e+g++  e+illv ++  A ++l      l+++                 + +++  l+ + +        e 
  EGE27001.1 141 SDVSFGVGPAGTGKTYLAVACAVDMLERGEI--ERILLVRPAVEAGEKLGFLPGDLTQKidpylrplydalyeMLGFEKVGKlLERQVI--------Ev 229
                 55666689********999988888888866..9**************99877677777666666675444443333333221333333........14 PP

      AAA_19  93 ...eaeeekklqeeellivDEfqdvdelqyrLlkallgekkklllvGDpdQ 140
                       + ++l ++  +i DE+q++++ q++++ + lg + + ++ GD  Q
  EGE27001.1 230 aplAYMRGRTL-NNSFVILDEAQNTTPEQMKMFLTRLGFGSRAVITGDMTQ 279
                 44434566778.8889**********66666655555588779999**999 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.5      0.13   2.4e+02      71     117 ..      23      69 ..       2      87 .. 0.69
   2 !   14.5   0.0   1.8e-05     0.033      11     115 ..     147     264 ..     145     276 .. 0.75
   3 ?   -2.0   0.0       2.2     4e+03      60      90 ..     296     326 ..     277     352 .. 0.55

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
      AAA_22  71 erlsseellealeqalraravielliiDEaqhlr.seealeeLrslln 117
                 +++  + + e+le ++ +r++ +++i  E + +  +e ++++L++l+ 
  EGE27001.1  23 YNKHIKYIQERLEVQITQRQD-QFIITGELDLVErTEIIINKLVELAG 69 
                 34456666799999*******.*********99654777777766654 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.8e-05
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaee...........erpevvfvtlpsst..sskdllrellralglelkaerlsseell.ealeqalrarav.iel 94 
                 +G++GtGKT+l+   +    e+ ++e+           e+ +++  +l+++    ++ l+ +l + lg e+ +  l +++++  a   ++r r    ++
  EGE27001.1 147 VGPAGTGKTYLAVACAVDMLERGEIERillvrpaveagEKLGFLPGDLTQKIdpYLRPLYDALYEMLGFEKVG-KLLERQVIeVAPLAYMRGRTLnNSF 244
                 6**********99888888888888889999999988888888877777777667788888898988888888.33333333255555555555588** PP

      AAA_22  95 liiDEaqhlrseealeeLrsl 115
                 +i+DEaq+  ++e+++ + ++
  EGE27001.1 245 VILDEAQNT-TPEQMKMFLTR 264
                 ********9.77777766554 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.2
      AAA_22  60 llralglelkaerlsseell.ealeqalrara 90 
                 +l+++++ + + r +s +++ ++l q + +++
  EGE27001.1 296 ILSKIDEIHIT-RFDSNDVVrHHLVQKIVQAY 326
                 55555555555.33333333344433333333 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.7e-05     0.031      53      75 ..     147     169 ..     139     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
   IstB_IS21  53 lGpsGvGKshlaialgveavrag 75 
                 +Gp+G+GK++la+a +v+  ++g
  EGE27001.1 147 VGPAGTGKTYLAVACAVDMLERG 169
                 7***************9998877 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   2.2e+03     104     118 ..      77      91 ..      22     144 .. 0.55
   2 ?   13.7   0.0   2.6e-05     0.047      32      71 ..     149     188 ..     130     346 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
                 -SEEEEEHHHHHHTH CS
      ResIII 104 kkilvttiqsldads 118
                  +++++  +sl++d 
  EGE27001.1  77 EELHLIIQSSLSRDY 91 
                 333333333333333 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.6e-05
                 STTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH CS
      ResIII  32 aTGtGKTlvaaklierllkkgkeekflflvprkslleqtl 71 
                 + GtGKT++a++ +  +l+ g++e++l++ p  +  e++ 
  EGE27001.1 149 PAGTGKTYLAVACAVDMLERGEIERILLVRPAVEAGEKLG 188
                 78***************************99888777765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0     0.001       1.9       4      56 ..     131     180 ..     129     187 .. 0.82
   2 ?    2.5   0.0     0.062   1.1e+02     121     144 ..     241     264 ..     220     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePt 56 
                 Q+e  + il  +  ++ ++ G+GKT  ++  +++ + e  + +  ++l+v P 
  EGE27001.1 131 QQEYTKKILISDVSFGVGPAGTGKTYLAVACAVDML-E--RGEIERILLVRPA 180
                 8888899998888899*****************999.3..4555588888886 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.062
                 TEEEEEEETHHHHHHTTTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 121 qvrflVlDEadrlldqgfsdfinr 144
                 + +f++lDEa++   ++++ f+ r
  EGE27001.1 241 NNSFVILDEAQNTTPEQMKMFLTR 264
                 4589*******9988877777765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.4e-05      0.15      34      61 ..     142     170 ..     130     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.4e-05
      AAA_25  34 elallaGapgtGKttlaldlalava.tGk 61 
                 +++  +G+ gtGKt la+  a++++ +G+
  EGE27001.1 142 DVSFGVGPAGTGKTYLAVACAVDMLeRGE 170
                 566779******************96664 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.8     0.055        99     110     201 ..      25     131 ..       6     145 .. 0.63
   2 ?    6.2   0.0    0.0037       6.6      22      51 ..     150     177 ..     147     178 .. 0.89
   3 ?    5.7   0.0    0.0052       9.4     259     294 ..     244     279 ..     234     280 .. 0.81
   4 ?   -3.1   0.2       2.4   4.3e+03     134     223 ..     318     329 ..     287     359 .. 0.46

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.055
                    GGTT............SHTTTEEECHHHHH........HCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCH......HHHCCCHHHHH CS
  UvrD-helicase 110 nrig............ldpnfrildeedee........dlkqqellkelleksaddslnldkkkleklikelsksrnik......keelslskska 179
                    ++i+            ++ +                    +++ ++++l+e  a +++n++ ++l  li++ s+sr ++      k + +  +sk 
     EGE27001.1  25 KHIKyiqerlevqitqRQDQ---------FiitgeldlVERTEIIINKLVE-LAGEQHNISGEELH-LIIQSSLSRDYDyantqgKHHDHSGNSKD 109
                    44443332222333333333.........2555555434455555666665.88899******999.99999999999988888866666666666 PP

                    CHHHHHHHHHHHTTCCTTHHCH CS
  UvrD-helicase 180 eelrelvskakekqlspkelkk 201
                    ++  ++  +  +++++p  +++
     EGE27001.1 110 KSDTNVALRTRKGKIIPRGYNQ 131
                    6666666666666666666666 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0037
                    TTSSHHHHHHHHHHHHHHTSSSTGGGEEEE CS
  UvrD-helicase  22 AGsGKTfvlaerilrlikeeeiepdrilvv 51 
                    AG+GKT+  ++  + +++ +  e++ril+v
     EGE27001.1 150 AGTGKTYLAVACAVDMLERG--EIERILLV 177
                    9*****************99..88888876 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0052
                    EEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 259 eiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                    ++  DE+Q T + Q++++ +     +  ++ GD  Q
     EGE27001.1 244 FVILDEAQNTTPEQMKMFLTRLGFGSRAVITGDMTQ 279
                    7899************98665555567888888777 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.4
                    HHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHTTCCTTHHCHSSTSCSHHHHHHHHHHHHHHHH CS
  UvrD-helicase 134 llkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakekqlspkelkkafekasdlqkkiaeflkeyqeq 223
                    l++++++                                                                               y + 
     EGE27001.1 318 LVQKIVQ------------------------------------------------------------------------------AYDQF 329
                    2222222..............................................................................22222 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.3   4.1e+03      30      72 ..      12      56 ..       7      95 .. 0.64
   2 ?   10.8   0.1   0.00028      0.51       4      22 ..     147     165 ..     145     265 .. 0.79
   3 ?   -0.1   0.1      0.63   1.1e+03      67      99 ..     300     332 ..     287     350 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.3
                ETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHH CS
         AAA 30 sgsellskyvgesekkirelfkeakeka...kpsilfiDEidalak 72
                + +el+  ++ge +k+i+ + ++++ +    +   ++  E+d + +
  EGE27001.1 12 NTHELR-TLLGEYNKHIKYIQERLEVQItqrQDQFIITGELDLVER 56
                555666.667777777777666665444443335666666665544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00028
                 ESSTTSSHHHHHHHHHHHH CS
         AAA   4 yGppGtGKTllakavakel 22 
                 +Gp GtGKT+la a a ++
  EGE27001.1 147 VGPAGTGKTYLAVACAVDM 165
                 6***********9999775 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.63
                 GGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA  67 idalaksrsgseseeeervvnqLlteldgvkkk 99 
                 id+++ +r +s++ ++  +v++++++ d++++ 
  EGE27001.1 300 IDEIHITRFDSNDVVRHHLVQKIVQAYDQFDEV 332
                 677777787788889999999999988888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2707.95
//
Query:       EGE27002.1  [L=447]
Description: biotin carboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-77  259.2   0.0    3.5e-77  258.6   0.0    1.2  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    5.6e-44  149.2   0.1    1.4e-43  147.9   0.1    1.7  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    1.3e-35  121.7   0.0    2.8e-35  120.7   0.0    1.6  1  Biotin_carb_C    Biotin carboxylase C-terminal domain
    2.6e-10   40.2   0.0    8.4e-10   38.5   0.0    1.8  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.7e-07   31.0   0.1    1.9e-06   27.6   0.0    2.1  2  ATP-grasp        ATP-grasp domain
    4.6e-07   30.0   0.0    8.4e-07   29.2   0.0    1.5  1  ATP-grasp_3      ATP-grasp domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.6   0.0   1.2e-80   3.5e-77       2     209 ..     116     320 ..     115     322 .. 0.98

  Alignments for each domain:
  == domain 1  score: 258.6 bits;  conditional E-value: 1.2e-80
                  HHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEE CS
  CPSase_L_D2   2 kesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvev 99 
                  k+sa +a+k+++vp+vp+s++ + tl +a + a+eig+P i+kaa+g+GG+Gmrv++  eel   v++a +ea+ afg+++v++e++lk+p+++Ev+v
   EGE27002.1 116 KVSAINAMKEAGVPTVPGSIG-AITLGNAEEQAREIGFPLIVKAAAGGGGRGMRVVERFEELLIQVQAAKTEAQNAFGDDTVYMERFLKNPRHVEVQV 212
                  78999****************.7899************************************************************************ PP

                  EEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HHH CS
  CPSase_L_D2 100 lrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvk 197
                  l D +gn++++++r++slq+r+qkv+e+AP++ + de r  + ea+v++++++g++gagt+efl++  ++e+++iE+NtR++ve++++e++TG+d+v+
   EGE27002.1 213 LGDGNGNALHLFDRDCSLQRRHQKVLEEAPAPDIPDEVRTPILEACVHACKKIGYRGAGTFEFLYE--NGEFFFIEMNTRVQVEHPVTEMITGIDIVV 308
                  ******************************************************************..6***************************** PP

                  HHHHHHTT--GC CS
  CPSase_L_D2 198 eaakialgekLe 209
                  e++kia+g+ L+
   EGE27002.1 309 EQLKIAAGYGLS 320
                  *********996 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   0.1   4.7e-47   1.4e-43       1     110 []       1     110 [.       1     110 [. 0.99

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 4.7e-47
                    ---EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHH CS
  Biotin_carb_N   1 kikkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeave 96 
                    +ikk+lianrGeiA+ri+ra+++lgi tv vys++d++ +h+r  deav++g+a++++sYl+i+++++aa+ + ada+hpGyGflsEnaefae+ve
     EGE27002.1   1 MIKKLLIANRGEIALRIVRACKQLGIATVGVYSTADKDLMHLRFVDEAVCIGNAPSAHSYLDINALLAAAEITAADAIHPGYGFLSENAEFAERVE 96 
                    79********************************************************************************************** PP

                    HTT-EESSS-HHHH CS
  Biotin_carb_N  97 eagivfiGPsaeal 110
                    eag++f+GP++e++
     EGE27002.1  97 EAGLTFVGPHPEHI 110
                    **********9986 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.0   9.2e-39   2.8e-35       1     107 [.     334     440 ..     334     441 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 9.2e-39
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHH.HHH-HH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflra.iledee 95 
                    e+RinaEdp++ f+ps+G++++l +p+g g+R+ds++++g+++++yyDsl++Kli+h++tr++a+a+  +aL+el+ieG+ktni+++r+ il+de+
     EGE27002.1 334 ECRINAEDPKT-FMPSPGQIQRLFTPSGSGIRFDSHLYQGYTIPSYYDSLIGKLICHAQTRRQAIAKTLHALDELVIEGIKTNIPLHRDvILQDEA 428
                    8********99.***************************************************************************983578999 PP

                    HHHT---TTTCC CS
  Biotin_carb_C  96 fakgeldtkfle 107
                    f +++ ++++le
     EGE27002.1 429 FCEEAQNIHYLE 440
                    ****99999997 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   2.8e-13   8.4e-10      29     174 ..     144     289 ..     126     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 2.8e-13
                      HHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT......-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHH CS
  Dala_Dala_lig_C  29 ekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky......dekvlvEeai.egreievavlgneklevsevgeivvkkgfydyea 115
                      e+   e+g+p++VK+a  G   G+  ve  eel   +++a         d +v +E+++ + r +ev vlg+++ +++++ ++  +  + + ++
       EGE27002.1 144 EEQAREIGFPLIVKAAAGGGGRGMRVVERFEELLIQVQAAKTEaqnafgDDTVYMERFLkNPRHVEVQVLGDGNGNALHLFDRDCS--LQRRHQ 235
                      5667899*************************98777766543222345999*******999************999988776554..445566 PP

                      HHC.TT-EEESS-.---HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 116 kysddkaqlevpa.klekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                      k  +     e pa ++++ev+  i e+ ++a k ++ rG +   f+++ +ge+++ E+Nt
       EGE27002.1 236 KVLE-----EAPApDIPDEVRTPILEACVHACKKIGYRGAGTFEFLYE-NGEFFFIEMNT 289
                      6653.....3344278999*************************9987.9*********9 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.1   3.1e+02     123     152 ..      11      40 ..       2      44 .. 0.86
   2 !   27.6   0.0   6.2e-10   1.9e-06       9     160 ..     132     291 ..     123     294 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHTSSEEEEEEEEEETTCTEE CS
   ATP-grasp 123 eeiakkiveeLggvGvfavElFvledgell 152
                  eia +iv++   +G+ +v ++ ++d++l+
  EGE27002.1  11 GEIALRIVRACKQLGIATVGVYSTADKDLM 40 
                 578999******************999875 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 6.2e-10
                 -EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-.EEE--EEEE CS
   ATP-grasp   9 prflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGe.tafypvvet 98 
                 p  + + +  ++ee a+e+g+p++vK +  g  G+G  vv+  e+l   ++a+        ++ +v++E f +  + + v v  + +G+  + ++    
  EGE27002.1 132 PGSIGAITLGNAEEQAREIGFPLIVK-AAAGGGGRGMRVVERFEELLIQVQAAkteaqnafGDDTVYMERFLKNPRHVEVQVLGDGNGNaLHLFDRDCS 229
                 5566666777899999**********.777889********9998876666666778999999***********9999999999999985667777777 PP

                 EEETTEEEEEEECE.E-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS- CS
   ATP-grasp  99 vqedgilrlsvapa.evsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRp 160
                 +q++   +l  apa +++++    + e + ++++++g+ G  ++E+ +  +ge ++ E+  R+
  EGE27002.1 230 LQRRHQKVLEEAPApDIPDEVRTPILEACVHACKKIGYRGAGTFEFLYE-NGEFFFIEMNTRV 291
                 7766655555555524999**************************7666.9999999998886 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.8e-10   8.4e-07       2     159 ..     114     292 ..     113     294 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2.8e-10
                  TSHHHHHHHHTTT.S--.-...........-EESS--SSSEEEEESS-------B--SS--TTE...................EEEE---S.EEEEEE CS
  ATP-grasp_3   2 sdKlktykkLkeagvkv.P.......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieG.kplSvs 78 
                   +K+   +++keagv++ P           +e+++e   +l+vK + G+gg ++rvve +ee+  +++  +             + +f++  +++ v+
   EGE27002.1 114 GNKVSAINAMKEAGVPTvPgsigaitLGNAEEQAREIGFPLIVKAAAGGGGRGMRVVERFEELLIQVQAAKteaqnafgddtvYMERFLKNpRHVEVQ 211
                  69999********9985379998875344566777889***********************99988888778999*******777889975499**** PP

                  EEE.SSSEEEEEEEEEEEET.....TEEEEEEES----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS-- CS
  ATP-grasp_3  79 llsdgekvlvlavnrqliekaeke.fvyaGnvtpietelkeevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRlt 159
                  +l+dg+ + +  + r    +++++ +       +i+ e +  + e++ ++++k+ g +G    +++++++e  +iE N R++
   EGE27002.1 212 VLGDGNGNALHLFDRDCSLQRRHQkVLEEAPAPDIPDEVRTPILEACVHACKKI-GYRGAGTFEFLYENGEFFFIEMNTRVQ 292
                  *****9988888887776555555155555566688888***************.*************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3704.85
//
Query:       EGE27003.1  [L=140]
Description: acetyl-CoA carboxylase, biotin carboxyl carrier protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-18   66.9   0.4    1.7e-18   66.2   0.4    1.3  1  Biotin_lipoyl    Biotin-requiring enzyme
    2.3e-05   24.1   0.8      0.022   14.6   0.1    2.3  2  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00033   20.5   0.2     0.0012   18.7   0.1    1.8  2  GCV_H            Glycine cleavage H-protein
  ------ inclusion threshold ------
      0.015   15.2   0.2       0.04   13.9   0.1    1.7  1  RnfC_N           RnfC Barrel sandwich hybrid domain
      0.023   14.9   0.4      0.094   12.9   0.3    2.1  2  Peptidase_M23    Peptidase family M23


Domain annotation for each model (and alignments):
>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.4   4.9e-22   1.7e-18       4      71 ..      67     136 ..      66     137 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 4.9e-22
                    EESSSEEEEEE...ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEE CS
  Biotin_lipoyl   4 ksPmiGesveeg..vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdlla 71 
                    +sPm+G+++ ++      +vkvG+kV+ag++l ++eamK ++++ea ++G+++eilvk+ + ve g++++
     EGE27003.1  67 TSPMVGVFYSAPspNDPPFVKVGQKVEAGDTLGIIEAMKIMNPLEATQSGIIEEILVKNAEVVEFGQPVI 136
                    58*********99999****************************************************97 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   6.2e-06     0.022      18      38 ..      86     106 ..      85     114 .. 0.84
   2 !    8.9   0.0   0.00037       1.3       6      29 ..     111     134 ..     102     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.2e-06
  Biotin_lipoyl_2  18 VkdGqrVkaGdvLaelDsral 38 
                      Vk Gq V+aGd+L +++  + 
       EGE27003.1  86 VKVGQKVEAGDTLGIIEAMKI 106
                      9**************997665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00037
  Biotin_lipoyl_2   6 aapvsGrVaqlnVkdGqrVkaGdv 29 
                       a +sG +++++Vk   +V+ G+ 
       EGE27003.1 111 EATQSGIIEEILVKNAEVVEFGQP 134
                      5667***************99996 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.32   1.1e+03      48      77 ..      35      64 ..       7      75 .. 0.59
   2 !   18.7   0.1   3.4e-07    0.0012      40      74 ..      87     121 ..      84     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.32
                T-EEEEEEESS-EEEEE-SSSEEEEEE-GG CS
       GCV_H 48 geslaavEsvKaasevyapvsGevvevNek 77
                + ++ +v +   +s  ++  +  vv+   +
  EGE27003.1 35 NTAVQTVATTQVVSAAPSATTPAVVKPSGQ 64
                334444445555555555555555555555 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 3.4e-07
                 -TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE CS
       GCV_H  40 evgtkvkkgeslaavEsvKaasevyapvsGevvev 74 
                 +vg+kv++g++l+++E+ K   ++ a  sG + e+
  EGE27003.1  87 KVGQKVEAGDTLGIIEAMKIMNPLEATQSGIIEEI 121
                 69****************************99986 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.1e-05      0.04      44      80 ..      84     121 ..      75     133 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
      RnfC_N  44 plvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkai 80 
                 p vkvg+kV+ G+ ++  e+  ++ p  a  sG + +i
  EGE27003.1  84 PFVKVGQKVEAGDTLGIIEAmKIMNPLEATQSGIIEEI 121
                 79**************99986789**********9998 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   2.6e-05     0.094      10      74 ..      32     103 ..      28     128 .. 0.67
   2 ?   -1.1   0.0      0.61   2.2e+03      52      68 ..     118     134 ..     104     136 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
                    ETTT-EEEESSSEEEEEEEEETTTEEEEEEEE....CTCEEEEEEEESEES...S-TTEEE-TTCEEEEEBS CS
  Peptidase_M23  10 apkgtpVlAaadGtVvfagkkegyGnvviidh....gdgystlyahlskis...vkegqkVkaGqvIGtvgs 74 
                      ++t V ++a+ +Vv a ++ ++  vv        +  +   y   s  +   vk+gqkV+aG+++G + +
     EGE27003.1  32 LTRNTAVQTVATTQVVSAAPSATTPAVVKPSGqletSPMVGVFYSAPSPNDppfVKVGQKVEAGDTLGIIEA 103
                    566778888888888888776544555544442221222223333333333666**************9875 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.61
                    ESEESS-TTEEE-TTCE CS
  Peptidase_M23  52 lskisvkegqkVkaGqv 68 
                    +++i vk  + V+ Gq+
     EGE27003.1 118 IEEILVKNAEVVEFGQP 134
                    45566676677766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1222.28
//
Query:       EGE27004.1  [L=211]
Description: putative lysine decarboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-38  130.2   0.0    6.2e-38  129.9   0.0    1.1  1  Lysine_decarbox  Possible lysine decarboxylase
    1.4e-16   60.5   0.0    1.8e-16   60.1   0.0    1.1  1  LDcluster4       SLOG cluster4 family
  ------ inclusion threshold ------
      0.021   14.9   0.0      0.035   14.1   0.0    1.3  1  Phage_int_SAM_6  Phage integrase SAM-like domain


Domain annotation for each model (and alignments):
>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0     1e-41   6.2e-38       1     132 []      52     182 ..      52     182 .. 0.99

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 1e-41
                      HHHHHHHHHHTTS-EEEEEECCHHHHHCCTTT-SEEEEESSHHHHHHHHHHHESEEEE-S-SHHHHHHHHHHHHHHHTTSS-S.EEEEEEGGGC CS
  Lysine_decarbox   1 meavakgaleaggrviGiipkillaeeapneevnelvivedmeeRkealveladafvilPGGiGTleElleiltliqlgkhqkvPiillnpkgy 94 
                      m+++a++++ +gg++iGiip++l+ +e++++ ++el+i+edm+ Rk ++++ladaf++lPGGiGT+eEl+e+++l+ql++h+k Pi++ln++g+
       EGE27004.1  52 MGTIADSIIAHGGKSIGIIPRFLKDKEVAHHGLSELIITEDMASRKLKMISLADAFIALPGGIGTYEELFEVMSLAQLRQHAK-PIGVLNVDGF 144
                      99*********************************************************************************.********** PP

                      CHHHHHHHHHHHHTTSS-GGGGGCEEEESSHHHHHHHH CS
  Lysine_decarbox  95 ydkllefletlveegtisekareliivvddpeevlekl 132
                      +++ l++le++ + g++  ++++li v+d+  ++l+k+
       EGE27004.1 145 FNPFLKLLEQTAKAGFMPVSNINLICVADNIPTLLTKM 182
                      ******************************99999886 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   2.9e-20   1.8e-16      14     127 ..      20     140 ..       8     163 .. 0.77

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2.9e-20
  LDcluster4  14 akeealelaeelGrliAkegavlltGgrt.GvmeaaskGakeagGltvGilpassekehsnk..yvdiiiyTGlglagRnlilvlssdvviaiggrsGT 109
                  ++  ++ a+ lG+ +A+++++l+ Gg + G+m   + ++  +gG ++Gi+p   +++++++  + ++ii+ ++   +R l ++  +d+ ia++g++GT
  EGE27004.1  20 DTPAYYHAAQSLGKTLAEHDITLVYGGGNvGLMGTIADSIIAHGGKSIGIIPRFLKDKEVAHhgLSELIITEDMA--SRKLKMISLADAFIALPGGIGT 116
                 5667799*********************99***********************5555555544444555555555..6********************* PP

  LDcluster4 110 lsEi....ala..leegkpvivlk 127
                 ++E+    +la   ++ kp++vl+
  EGE27004.1 117 YEELfevmSLAqlRQHAKPIGVLN 140
                 ***722222221135667777776 PP

>> Phage_int_SAM_6  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.8e-06     0.035      49     102 ..     122     175 ..     110     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.8e-06
  Phage_int_SAM_6  49 sieelekivkeaRniGliGintyanPllklyeyliklelaslkeideellsefl 102
                      ++ +l ++ ++a+ iG++ ++ ++nP+lkl e  +k+++  +++i+  ++ + +
       EGE27004.1 122 EVMSLAQLRQHAKPIGVLNVDGFFNPFLKLLEQTAKAGFMPVSNINLICVADNI 175
                      56678999999*********************************9988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.29s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1465.05
//
Query:       EGE27005.1  [L=407]
Description: ribonuclease D [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-21   77.4   0.1    1.8e-21   76.6   0.1    1.4  1  DNA_pol_A_exo1  3'-5' exonuclease
    2.6e-15   56.1   0.3    5.1e-15   55.2   0.3    1.5  1  HRDC            HRDC domain
  ------ inclusion threshold ------
       0.16   12.4   0.0       0.29   11.5   0.0    1.4  1  Rep_fac-A_3     Replication factor A protein 3


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1   3.1e-25   1.8e-21       3     175 ..      25     189 ..      23     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 3.1e-25
                     EEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTSSEEEEEEEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHH.H CS
  DNA_pol_A_exo1   3 ivtdeeeleelieelknlkvvavDtEttsldlisatlvliliqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlard.f 96 
                     +v+++++l +li e+++++vva+DtE+ + ++  ++  l+liq+ ++++ y+id  +l      e+ ++l e +  t+v  ++ +Dl +++   +
      EGE27005.1  25 WVQNDDDLYALIDEIDASDVVALDTEFIKRTT--YYPILALIQINTGNAIYLIDAPKLDL---TEFWQALAEVP--TMVWYACGEDLGIFYLLaK 112
                     89******************************..******************99877766...46666666655..7************999756 PP

                     TS--SSEEEHHHHHHHTTHSTTSSHHHHHHHHHSB---GHCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHHH CS
  DNA_pol_A_exo1  97 gielenlfdtmlaayvldyershsLdsLaekylgdleldkeeqiakwqkarplleeqllYAaeDadvllrlfkkLtkel 175
                        l n+fd+++  + l+ + + ++++ + ++lg +e+dk e  ++w  arpl+ eq  YAa+D+ +ll+l++  + el
      EGE27005.1 113 CPPLTNIFDVQIGVAYLSGKLQAGYSQALNEMLG-IEIDKGESQSNWL-ARPLSYEQETYAANDVRYLLKLYEVVRTEL 189
                     66789*****777666666666************.*************.***********************9887776 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.3   8.6e-19   5.1e-15       1      68 []     233     299 ..     233     299 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 8.6e-19
                 HHHHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHHHH CS
        HRDC   1 qlallkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeileai 68 
                 ql++l++L+ wRe+lAr+ ++p++++ ++++L+ei++ +P + + L++   + ++ l++yg+ei+++i
  EGE27005.1 233 QLGVLQQLTIWREALARATNEPRSFIISKQALREIVQDMPDSIKLLART-TINRAVLRRYGNEIVRII 299
                 789*********************************************5.***************998 PP

>> Rep_fac-A_3  Replication factor A protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.8e-05      0.29       5      35 ..     280     310 ..     276     335 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.8e-05
                  -EEE-GGGGGGGTTSEEEEEEEEEEETTSSE CS
  Rep_fac-A_3   5 tprvnpsmLsqfvgrtvrivgkvesvpsgkt 35 
                  ++ +n + L+++ ++ vri+ +v+++p g+ 
   EGE27005.1 280 RTTINRAVLRRYGNEIVRIICQVKNMPDGNL 310
                  678***********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3257.10
//
Query:       EGE27006.1  [L=198]
Description: recombination protein RecR [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-21   74.4   0.0      2e-20   73.0   0.0    1.7  2  Toprim_4  Toprim domain
    4.9e-14   51.6   2.5    1.1e-13   50.5   2.5    1.6  1  RecR      RecR protein
    1.9e-07   31.2   0.0    3.5e-07   30.4   0.0    1.4  1  Toprim    Toprim domain


Domain annotation for each model (and alignments):
>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   3.4e-24     2e-20       3      87 ..      81     168 ..      79     170 .. 0.91
   2 ?   -3.4   0.0       2.3   1.4e+04       8      18 ..     180     190 ..     180     192 .. 0.87

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 3.4e-24
    Toprim_4   3 iiiVEgyaDvlaleka.giknvvavlggalspldgirpeklktenlve..aekkvkevilaldgDaeGeataerlaellleegvkvtr 87 
                 +++VE+  Dv+a+e++  +++ ++vlgg lsp dgi+  +l++++l++  +++ + evila+ +++eG++ta+++ +++  +  k+tr
  EGE27006.1  81 LCVVENASDVMAIEQSgAYRGKYFVLGGHLSPIDGINANDLHIDQLIHriRHEAIHEVILATGATVEGQTTAFFIHDAICTHVPKITR 168
                 8*************************************************************************98855455555555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.3
    Toprim_4   8 gyaDvlaleka 18 
                 gy D + l++a
  EGE27006.1 180 GYVDSITLHQA 190
                 79999999997 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   2.5   1.8e-17   1.1e-13       2      40 .]      39      77 ..      38      77 .. 0.96

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.8e-17
                HHHHHHHHHHHHHH-EE-TTT--EESSSS-CCCCSTTSE CS
        RecR  2 aeeLaeaLqeakekvrhCsrCgnlteedlCaICsdprRD 40
                +  La aL++a+ +++ C +C+ ++++++C+IC d rRD
  EGE27006.1 39 GLSLAAALETAMHDIKECLQCHSFSDDEICPICLDHRRD 77
                678***********************************9 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   5.9e-11   3.5e-07       2      89 ..      81     161 ..      80     171 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 5.9e-11
                 EEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHHH.HHHHH.HHHSEEEEECSSSHHHHHHHHHHHHHHTH CS
      Toprim   2 lvivEgpsdaktiakalgsgfqavtaslGhildletefkpvyeeiedkkkvlka.lkela.kradeiilatDpDreGeaiawellevlke 89 
                 l++vE  sd+++i++  g   ++++ + Gh+  ++         i+ +  +++  +++++ +  +e+ilat + +eG+++a+ + ++++ 
  EGE27006.1  81 LCVVENASDVMAIEQS-GAYRGKYFVLGGHLSPIDG--------INANDLHIDQlIHRIRhEAIHEVILATGATVEGQTTAFFIHDAICT 161
                 8***************.88*****************........666666666644444445578*****************99987774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1590.20
//
Query:       EGE27007.1  [L=110]
Description: hypothetical protein EA1_04155 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-28   98.2   7.9    3.1e-28   97.8   7.9    1.1  1  YbaB_DNA_bd  YbaB/EbfC DNA-binding family
  ------ inclusion threshold ------
      0.039   14.0   4.3       0.12   12.5   1.9    2.0  2  ApoLp-III    Apolipophorin-III precursor (apoLp-III)


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   7.9   3.4e-32   3.1e-28       1      90 [.       7      99 ..       7     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 3.4e-32
                 HHHHHHHHHHHH....HHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--X CS
  YbaB_DNA_bd  1 mkqaqkmqkkme....eaqeelaekevegssggglVkVtvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeemskltggl 90
                 m+qaq+mqk++e    +a++ la+kev+g++g+glVkVt++g++ vk++ Idpsl+d ++++m+edl++aA+ndA+++a+e  ee m+ +t g+
   EGE27007.1  7 MQQAQAMQKQVEknveAAKASLATKEVQGEAGNGLVKVTMTGRHVVKRLAIDPSLMD-DEPDMIEDLVAAAINDAVRQADELYEEVMAGATTGM 99
                 99*******998777789**************************************9.559******************************998 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.9   1.3e-05      0.12      95     124 ..       2      31 ..       1      45 [. 0.90
   2 ?    2.0   0.0     0.023   2.1e+02     121     143 ..      69      91 ..      62      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
   ApoLp-III  95 gvqslvkesqklaeslkensqeakeklaka 124
                 ++q+l++++q++ +++++n+++ak+ la++
  EGE27007.1   2 NIQALMQQAQAMQKQVEKNVEAAKASLATK 31 
                 89************************9865 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.023
   ApoLp-III 121 lakaikqayddaveaaqklakqL 143
                 +++++ +a++dav +a +l +++
  EGE27007.1  69 IEDLVAAAINDAVRQADELYEEV 91 
                 78889999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1316  (0.0734006); expected 358.6 (0.02)
Passed bias filter:                      816  (0.0455129); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 960.13
//
Query:       EGE27008.1  [L=758]
Description: ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.1e-123  411.7   0.0   7.1e-121  404.3   0.0    2.2  1  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
    1.1e-16   61.2   0.7      3e-16   59.8   0.5    1.9  2  ATP-cone         ATP cone domain
    4.5e-10   39.4   0.1    1.2e-09   38.1   0.1    1.8  1  Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain


Domain annotation for each model (and alignments):
>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.3   0.0  1.2e-124  7.1e-121       1     523 [.     225     733 ..     225     734 .. 0.96

  Alignments for each domain:
  == domain 1  score: 404.3 bits;  conditional E-value: 1.2e-124
                      EEE.....BSS-EEEE-X..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC   1 ssCfvlsvedslesIletvkeaallskaggGvGlnlsklRakgslvkgtegaasGpvsfmklidavadvvkqgGkRrGAamvylevwHpDiekf 94 
                      ssC++++  d+l+sI  t++++++++++++G+G+n+  +Ra gs+++g e +++G+++f k+++a ++ ++qgG+R GAa++++ +wH ++e++
       EGE27008.1 225 SSCVLVECGDNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKSCSQGGVRGGAATLFYPIWHLEVESL 318
                      8********************************************************************************************* PP

                      XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............................XXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC  95 idaKekntgeeenrlsnlnisvgvpdlFmeavkedkdwtLfsPrtvvkleklyg...eefeeeyeeleekakikkkevkakeLfeeiaesawet 185
                      + +K +n g e+nr+++++++v ++  ++ ++ ++ d+tLfsP++v+ l++ +    e+fe+ y+++e++++i+k++v+a++Lf+ +++ +++t
       EGE27008.1 319 LVLK-NNRGVEDNRVRHMDYGVQINKTMYARLIKGTDITLFSPSDVPGLYEAFFadqETFERLYTQYEADENIRKRKVPARDLFSLMLQERAST 411
                      ****.99****************************************998877644445*********************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 186 gePgvlfkDtiNrrnvlekakggkIratNlCgEiplleyes.........vavCnLasinLakfvkkdeegkkefdwdelkkviqlvvraLdnv 270
                      g+ ++++ D++N++++++++   +Ir++NlC+Ei+l++ +          +a+C+L++inL k+           ++ ++++  +l+vraLd++
       EGE27008.1 412 GRIYIQNVDHCNTHSPFDPTV-APIRQSNLCMEIALPTAPLdnindekgeIALCTLSAINLGKIE----------KLSDIEEPAELIVRALDAL 494
                      *****************8885.*****************999**********************9..........688999************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.. CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 271 idvnkyplpeiekntkktRriGlGvmgladalaklgipydseealkfarkitelltyyaykaSvelAkergpfplfekskyskgilpvdefeek 364
                      +d+++yp+ +++k++ ++R++G+Gv ++a +lak+g +y +  al ++++++e+l+yy +kaS++lAke+ ++p f+++kys+gilp+d++++ 
       EGE27008.1 495 LDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKNGTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPIDTYKKD 588
                      *******************************************************************************************433 PP

                      ............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      x........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 365 e........kedweeLreeikkyGlrnamvtalaPTgsiSliagtssgiePifalvykksvtvgeflevnpvfeeeLkklglwseellkkiles 450
                               + dwe+Lr +ik yGlrn++++al+P++++S+ia++++gieP   lv++k +++g + +v p++                     
       EGE27008.1 589 LdsicteplHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVSIKASKDGILKQVVPEI--------------------- 661
                      367778888********************************************************99998887..................... PP

                      XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 451 vqgleeipeeikrvfktaldi.dqedhikaqaaiqkwidqsiSktinl......pneatvedvkelyllAwklGlKgvty 523
                              e++   ++  ++i d++ +++++  +qk+idqsiS + n+        +++++ + + +l+A+k G+K+++y
       EGE27008.1 662 --------ERLASQYELLWNIpDNNGYLRLVGIMQKFIDQSISANTNYdptkfeGGKVPMKVLIQDLLTAYKFGVKTLYY 733
                      ........678899*******8999************************99988889999999****************9 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.5     5e-20     3e-16       1      85 [.       7      93 ..       7      94 .. 0.90
   2 ?   -3.1   0.0       2.1   1.2e+04       6      29 ..     614     644 ..     614     666 .. 0.61

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 5e-20
                -EEE-TTS-EEE--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHH.....HSS-HHHHHHHHHHHHHHH CS
    ATP-cone  1 ikViKRdGtvepfdvekIkraiekAcegseeeideiaeeveaevrkrlrdgisteeIqdlvektli.....ehpdyavaaayilyrnlrk 85
                ikV+KRdG+ ep++ +kI r i++A+e  +++    +++ve++  +++++gi t +I++ ++k+++     e pdy+++aa++  ++lrk
  EGE27008.1  7 IKVTKRDGRLEPINLDKIHRVIAWAAED-LNN--VSVSQVELKSHIQFYEGIRTRDIHETIIKAAAdlisvETPDYQYLAARLAIFHLRK 93
                68***********************998.333..334477778888*******************************************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
                 TTS-EEE--HHHHHHHHHHHHHH.......- CS
    ATP-cone   6 RdGtvepfdvekIkraiekAceg.......s 29 
                 R+ t   + ++ + + i++A +g       +
  EGE27008.1 614 RNSTLSALMPSETSSQIANATNGiepprglV 644
                 6777777888888888999988855444330 PP

>> Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.1     2e-13   1.2e-09       2      82 ..     144     221 ..     143     222 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2e-13
  Ribonuc_red_lgN   2 kltynalkvledrYllkdeng.eivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtel 82 
                      +l y+a++ ++ +Yl +d+ + +++Espq ++  v + l     +     ++ d++++fyd+ s++++++++P+++  +t++
       EGE27008.1 144 NLAYAAVEQMMGKYLVQDRVTkRVYESPQFLYVLVGMCLFAGYDK----AQRLDYIKRFYDATSNFYISLPTPIMSGVRTPT 221
                      6889***************7769****************996654....69*************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.38
# Mc/sec: 6037.19
//
Query:       EGE27009.1  [L=63]
Description: hypothetical protein EA1_04165 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 563.37
//
Query:       EGE27010.1  [L=328]
Description: ribosomal large subunit pseudouridine synthase B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-16   60.4   0.1    2.1e-15   57.2   0.0    2.5  2  PseudoU_synth_2  RNA pseudouridylate synthase
    1.6e-10   40.5   0.6      5e-10   38.9   0.6    2.0  1  S4               S4 domain
  ------ inclusion threshold ------
      0.035   14.1   0.0      0.066   13.2   0.0    1.5  1  Translat_reg     Bacteriophage translational regulator


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   3.4e-19   2.1e-15       2     159 ..      88     220 ..      87     221 .. 0.88
   2 ?   -1.7   0.5      0.45   2.7e+03      82     120 ..     282     320 ..     270     328 .] 0.50

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 3.4e-19
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      +++++KP+g +++  +      + + t  ++ ++ +++++ +v+RLD ++sGlll+++++e+a++l++  ++ ++ ++Y + v        g++
       EGE27010.1  88 VIAYYKPEGEICSASD-----PQGRPTVFDRLPKLTNDRWVMVGRLDINSSGLLLFTNDGELAHRLMH--PSSGIIREYAVRVL-------GEV 167
                      799*************.....88999999999************************************..*************5.......333 PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                        +i           + +++ + ++ v+++  +k+g  +  + ++++ +++++Grk+++R++++
       EGE27010.1 168 TPQIAS---------QLTAGVELEDGVAKFDDIKEG--GGIGVNKWYHVTIKEGRKREVRRMFE 220
                      333333.........344477889999999999999..88889999****************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.45
  PseudoU_synth_2  82 alvfgapeeeegaikkkiskdtekqegarrkaeeldgkk 120
                      a ++++p ++  + ++k +++ +++e+++++ ++++ + 
       EGE27010.1 282 ARIHKKPLKSREIRRQKHEAHERREERKKHTPKHRTPNL 320
                      344444444444444444444444444455555555555 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.6   8.3e-14     5e-10       2      47 ..      25      68 ..      24      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 8.3e-14
                EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCE CS
          S4  2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDv 47
                 L+k+larlgl+s rr  +++I+ Gr+ +NGkv++  ++rV   D+
  EGE27010.1 25 KLQKLLARLGLGS-RRGLEEIIKSGRISINGKVAT-LGDRVILTDE 68
                79**********9.*********************.***9966666 PP

>> Translat_reg  Bacteriophage translational regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.066      50      90 ..      65     106 ..      18     124 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                   HHHHHHHTT------HHHHHHHHHHHHHHHHTTS-EE-.SS- CS
  Translat_reg  50 fkellaldgrqveiteedivrrdsiaklledwnlikiv.pes 90 
                   + + +++dgrqv + +e ++rr  ia+   + +++    p+ 
    EGE27010.1  65 LTDEIRIDGRQVRLKAEREKRRRVIAYYKPEGEICSASdPQG 106
                   566789********************9988888887765655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1124  (0.0626917); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 2775.45
//
Query:       EGE27011.1  [L=188]
Description: condensin subunit ScpB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-47  160.4   0.1    3.5e-47  160.0   0.1    1.1  1  SMC_ScpB      Segregation and condensation complex subunit Sc
  ------ inclusion threshold ------
      0.052   13.7   0.0       0.13   12.4   0.0    1.7  1  DnaJ          DnaJ domain
      0.066   13.1   0.1       0.25   11.2   0.0    1.8  2  TFIIE_alpha   TFIIE alpha subunit
      0.095   12.8   0.1       0.13   12.4   0.1    1.3  1  Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)


Domain annotation for each model (and alignments):
>> SMC_ScpB  Segregation and condensation complex subunit ScpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.1   7.8e-51   3.5e-47       2     160 .]      22     178 ..      21     178 .. 0.98

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 7.8e-51
    SMC_ScpB   2 iiEAiLfvageplsleeLakilelskeeveealeeLkeeyeeedrglelvevaggyrlvtkpelaevvkklvkekkktrLsqaaletLaiIaykqpvtr 100
                  iE +L ++++pl+ ++L+k l ++++e+++al+ L+e++  +   l+l+++a+gyrl++k  ++++++++++e + ++Lsqa letL+iIay+qpvtr
  EGE27011.1  22 YIEVLLHASETPLTDKDLKKHLMIGSNELQDALAILQERL--SYGVLTLNKTASGYRLQIKDSYSSLIQQVFPE-RLENLSQALLETLSIIAYQQPVTR 117
                 59**************************************..999*****************************.************************ PP

    SMC_ScpB 101 aeieeiRGvn.sdsvvrtLlerglieekgrkeepgrpilYgtTekFleyfglksleeLpkl 160
                 ++ie++RGv+ s++++r+L+++g+i e+g+k++ grp+l++tT+ Fl+ fgl+sl+ Lp+l
  EGE27011.1 118 SDIEQVRGVAvSSNILRQLFDKGWIVENGHKDTLGRPALLHTTQAFLDAFGLDSLDRLPPL 178
                 **********99***********************************************86 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.9e-05      0.13       3      33 ..      63      95 ..      61     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
                HHHHTSSTTG-..HHHHHHHHHHHHHHHSTTTS CS
        DnaJ  3 YeiLgvskdas..edeIkkaYrklalkyHPDkn 33
                Y +L ++k+as    +Ik +Y  l++++ P++ 
  EGE27011.1 63 YGVLTLNKTASgyRLQIKDSYSSLIQQVFPERL 95
                99********954556**************975 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.7e-05      0.25      15      53 ..      19      59 ..      10      64 .. 0.82
   2 ?   -0.8   0.0       0.3   1.3e+03      16      47 ..     103     136 ..      85     145 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.7e-05
                 HHHHHHHHHCTTS..EBHHHHHHHHTS-HHHHHHHHHHHHH CS
  TFIIE_alpha 15 avlvldvLlekge..vteedlakelkidlnelrklLnrLye 53
                 +   ++vLl  +e  +t+ dl+k+l i  nel  +L+ L+e
   EGE27011.1 19 FSRYIEVLLHASEtpLTDKDLKKHLMIGSNELQDALAILQE 59
                 5566888887776337********************99986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.3
                  HHHHHHHHCTTSEBHHHHHHHHT..S-HHHHHHH CS
  TFIIE_alpha  16 vlvldvLlekgevteedlakelk..idlnelrkl 47 
                   + l +++ +  vt  d+++  +  +  n+lr+l
   EGE27011.1 103 LETLSIIAYQQPVTRSDIEQVRGvaVSSNILRQL 136
                  4566777777777777777654411445555554 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.8e-05      0.13      31     110 ..      48     123 ..      14     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.8e-05
                   HHHHHHHHHHHHHHHH-SS-HHHHHHHHHHCS-TTHHHHHHHHHHHHH.STSS-HHHHHHHHHHHHGGGS---HHHHHHH CS
  Spore_III_AB  31 eelkralellegeirygatpLpealeklaeksesplseffeevaerleekegesfeeaweeavekllkklaLkkedkeil 110
                   +el+ al++l+ +++yg  +L++  +    ++++++s+++++v  +    + e++++a+ e+++    + +++++d+e +
    EGE27011.1  48 NELQDALAILQERLSYGVLTLNKTASGYRLQIKDSYSSLIQQVFPE----RLENLSQALLETLSIIAYQQPVTRSDIEQV 123
                   79*************************************9999998....999999999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1654.52
//
Query:       EGE27012.1  [L=285]
Description: condensin subunit ScpA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-19   69.2   2.4    9.1e-18   65.0   2.4    2.0  1  SMC_ScpA  Segregation and condensation protein ScpA


Domain annotation for each model (and alignments):
>> SMC_ScpA  Segregation and condensation protein ScpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   2.4   5.1e-22   9.1e-18       1     229 [.      54     253 ..      54     259 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 5.1e-22
                 HHHHHHHHHTSSSSXXXXHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX... CS
    SMC_ScpA   1 LiiakeldvtdvavakvtdqflayiktllnkleleesteylviastlvelKaasLlpleqveeeedeeleleelrdkLiarLleYrkykeeaklfk... 96 
                 L+ ++++d+t+ a+  +t+q+l yi  l  +   e +++yl++astl+ +K++ Llp  +v++  de      ++ +Li rL eY + ke+a+ +    
  EGE27012.1  54 LVKKNNFDLTETAILPITEQYLSYISEL-DEAYFELAGDYLLMASTLIAIKSELLLPQSKVDD--DEI----SPKARLIRRLEEYAQIKEAARRIDgll 145
                 677899**********************.99*******************************9..433....67999**************98765222 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...HHHHHHHHHHHH...............HHHTS-EEGG CS
    SMC_ScpA  97 eleaerlksfskarsdleefikeveevavkieksvfklieafnkllkrakivalaekqiseleisieeqleellaqleqflqarlkevLldlrswvdls 195
                 +le +  + f+  +s +    k++++   ++ ++       ++  +++  i    + +++  +++  ++ + +      + + +         +   + 
  EGE27012.1 146 RLERDVFLAFTSMPSPE-AMQKQLPKYSPELLVE-----SLIHMKIRPEAI---TH-TVQADSVPLSQRIASITR----LISEK---------GVSTFA 221
                 67777779999996665.5789999988887777.....445566777744...44.345556788888777773....43333.........457899 PP

                 GSSTT...--HHHHHHHHHHHHHHHHTT-EEEEE CS
    SMC_ScpA 196 eLladnkledkkelvgvFlAlLeLiknqavaleQ 229
                 eL+ +   + k+ +v+ F+A+LeL+k  ++ ++ 
  EGE27012.1 222 ELIDK--SQGKIGIVVSFVAVLELMKRGLIGFDE 253
                 **999..9******************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2458.19
//
Query:       EGE27013.1  [L=353]
Description: tryptophanyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-53  180.7   0.0    5.6e-53  180.2   0.0    1.2  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
  ------ inclusion threshold ------
      0.065   12.1   0.1        1.9    7.3   0.0    2.3  3  tRNA-synt_1f  tRNA synthetases class I (K)
       0.11   12.1   0.1       0.25   11.0   0.1    1.5  1  BAG6          BCL2-associated athanogene 6
       0.12   10.6   0.0       0.16   10.1   0.0    1.1  1  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.0   1.3e-56   5.6e-53       3     289 ..       3     297 ..       1     301 [. 0.86

  Alignments for each domain:
  == domain 1  score: 180.2 bits;  conditional E-value: 1.3e-56
                   HS--EEEEEEETSSS-BGG.GHHHHHHHHHHHH.....TTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHH CS
  tRNA-synt_1b   3 erplrvysGidPTgklHlG.ylvplkklvelqk.....aghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsew 93 
                   + + r+++Gi +Tg +HlG y++++++ ++        +  ++ff++aD h+ii   +   + ++  +++  +++   +la+gldpek+ ++ qs++
    EGE27013.1   3 TTKKRILTGITTTGIPHLGnYVGSIRPAIAEAHrafenHDGDAFFFLADYHGIIKCFD---PDEIHRSTRAIAAT---WLACGLDPEKVIFYRQSDI 93 
                   56779********************99865333344339999****************...**************...******************* PP

                   HTTHHHHHHHHHHHTTCBHHHHHHHHH.CCHHCSS.S....C--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHH..STTSS CS
  tRNA-synt_1b  94 lehlelaellrdlgklgslnrmlqfks.vkkrlee.g....egislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkk..evfkk 182
                   +e  ela++l++    g +nr  ++k+ v  +l++ +     gis+g+f Yp+L+aaDil+++a++vp+G+DQ q+ie++rd+a +fn k   +f +
    EGE27013.1  94 PEIPELAWILNCSCAKGLMNRAHAYKAaVDMNLSKeDtdpdYGISMGLFGYPVLMAADILMFNATHVPVGKDQIQHIEMARDIAGSFNFKykPLFVE 190
                   ***************************9888888844899899*********************************************999999*** PP

                   -EEEEET...-BBSTTSSSBTTCETTCGC-BTTCCHH...HHHHHHHHCHCSTTC.SHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHHHHC CS
  tRNA-synt_1b 183 pegltvp...lltgldGekKmSKSagnsaIfLddeke...svkkkiqkavtdsde.evekllklktelsnelierleavsgkkpkreaeellaeevt 272
                   p++++ +   lltgldG  KmSKS gn +I L ++ +    ++k  +kav +         ++  +e +  ++e+++a+++ ++   +e l+  +++
    EGE27013.1 191 PFAVVDEntpLLTGLDGR-KMSKSYGN-TIPLFGDDNpqiNPEKALKKAVMQIVTnSQPPEEPKDPEHCT-IFEIYKAFGTPEE---IEALATHYRR 281
                   ***9988888********.********.998854433112566666666655444245555666667777.8899999998776...9999999999 PP

                   CCCHHHHHHHHHHHHHH CS
  tRNA-synt_1b 273 klvhggdlkkalaealn 289
                   + +++g++k+ l +++n
    EGE27013.1 282 G-IGWGEAKEILFNKIN 297
                   9.8****9998888776 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00043       1.9      25      73 ..       6      54 ..       2      70 .. 0.70
   2 ?    2.3   0.0     0.015        65     238     291 ..     160     219 ..     150     240 .. 0.69
   3 ?   -4.2   0.0       1.3   5.8e+03     140     162 ..     303     325 ..     302     331 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00043
  tRNA-synt_1f 25 vvvesGispSGliHiGnlrevltadlvaralrkr.geevrlilisDdmDg 73
                    + +Gi++ G +H+Gn    +++ + a+a r+   ++ + +++  d+ g
    EGE27013.1  6 KRILTGITTTGIPHLGNYVGSIRPAI-AEAHRAFeNHDGDAFFFLADYHG 54
                  5678*************998888754.44444431455666666666655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.015
  tRNA-synt_1f 238 EpaGkDhaaaGgSvdvsskiaeilgge.aPekvvYelillkgge........kmssSkGnvlt 291
                    p+GkD ++    ++++++ia  ++++ +P  v    + +++          kms+S Gn + 
    EGE27013.1 160 VPVGKDQIQ---HIEMARDIAGSFNFKyKPLFVEPFAVVDENTPlltgldgrKMSKSYGNTIP 219
                   578999988...8899999997777753444443333333332233333455*******9986 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 1.3
  tRNA-synt_1f 140 ydeaikealenrekikeilekyr 162
                   y+e  +++++n ++++eil+   
    EGE27013.1 303 YRERYLHLMNNPKELEEILQMGA 325
                   77888899999999999997655 PP

>> BAG6  BCL2-associated athanogene 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   5.6e-05      0.25       9      49 ..     294     333 ..     291     342 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.6e-05
        BAG6   9 revqerlePfleryieileedptfeesdntegreeaqrild 49 
                 ++++++++P+ ery +++++  ++ee   + g  +a r+++
  EGE27013.1 294 NKINHEIAPYRERYLHLMNNPKELEEIL-QMGATKARRVAQ 333
                 68899******************99987.455555555543 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   3.7e-05      0.16     502     572 ..     143     218 ..     136     221 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.7e-05
  tRNA-synt_1 502 gypeedteelkkffpadmlleGlDiirgW.varlillslaltgse....Pfkevlvh.glvrdeeGrKmSKslgNvi 572
                  gyp   + ++  +f a  +  G D+i+   +ar i  s +++ +     Pf  v  +  l++  +GrKmSKs gN+i
   EGE27013.1 143 GYPVLMAADIL-MFNATHVPVGKDQIQHIeMARDIAGSFNFKYKPlfvePFAVVDENtPLLTGLDGRKMSKSYGNTI 218
                  55555555555.4555555566666654325666666666666655555888886541588899***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2730.39
//
Query:       EGE27014.1  [L=274]
Description: indole-3-glycerol-phosphate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-85  284.4   0.6    7.1e-85  284.2   0.6    1.0  1  IGPS      Indole-3-glycerol phosphate synthase


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.2   0.6     4e-89   7.1e-85       1     252 [.       9     268 ..       9     270 .. 0.94

  Alignments for each domain:
  == domain 1  score: 284.2 bits;  conditional E-value: 4e-89
                 HHHCHHHHHHHHHHHHCCS-GGCCCCG..-SS-SS-HHHHCHCH..TTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE--CCCC--- CS
        IGPS   1 lekivaekkeevaeakkrqsladleaavklakpkrsfaeaLres..ekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLteekyFqGs 97 
                 l+ki+a+k++e+a ak+ +  ++l +++ +++  r+fa+aLr    ++++++iaEvKkaSPskg i++df+p+  A++ye+agA+++SVLt+ +yFqG+
  EGE27014.1   9 LQKIIATKHQEIAVAKAIKTTNELLKSA-AHHMPRGFANALRAVdtTTDIGVIAEVKKASPSKGIICQDFNPVTTAQAYEKAGATCLSVLTDRDYFQGH 106
                 79*****************999998886.78889********98778999************************************************* PP

                 CCHHHHHHHH-SS-EEEES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-EEEEEESSHHHHHHHH...HTT-SEEEEESEETTTTE CS
        IGPS  98 ledLrevrqavslpvlrKdFiideyqieearalgadaiLLivkvledeeleelaeaakslglevLvEvhdeeeleral...klgakiiGvNnRnLktle 193
                 +++L ++r+av+lpvlrKdF++deyqi e+ a+gad+iLLi+++l+ +++ +l ++a++lgl+vL+E+h+ +el++al   k+  +i G+NnRnL+t++
  EGE27014.1 107 DDYLIKARKAVRLPVLRKDFMVDEYQIIESAAMGADCILLIMACLDADTALHLHQTATDLGLDVLIEIHTDDELTQALnlpKSAHNIYGINNRNLNTFQ 205
                 ******************************************************************************44445679************* PP

                 E-CHHHHHHCHCC-....TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHH CS
        IGPS 194 vdlntteeLaklvp....kdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekair 252
                 vdl+++ +L++ +     +d+l+v+eSGi+++ d+++++++ ++ fL+Ge++m+ +++  a+ 
  EGE27014.1 206 VDLENSIRLSQRLFanlgQDALVVSESGIHHATDIHRMQQNHIHHFLIGEQFMKTDNAGGALS 268
                 *****988877654455599***********************************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2083.39
//
Query:       EGE27015.1  [L=363]
Description: anthranilate phosphoribosyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-90  302.7   5.3    2.2e-90  302.7   5.3    1.7  2  Glycos_transf_3  Glycosyl transferase family, a/b domain
    1.7e-15   56.6   0.6    4.1e-15   55.4   0.6    1.7  1  Glycos_trans_3N  Glycosyl transferase family, helical bundle 


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.21   1.9e+03     150     164 ..      69      83 ..      62      88 .. 0.80
   2 !  302.7   5.3   2.4e-94   2.2e-90       2     252 ..      93     348 ..      92     349 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.21
                      TSHHHHHHHHHHHHH CS
  Glycos_transf_3 150 dGldevsllakttva 164
                      +  de++++akt++ 
       EGE27015.1  69 ESIDEITTCAKTMIE 83 
                      558*********986 PP

  == domain 2  score: 302.7 bits;  conditional E-value: 2.4e-94
                      TTBEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEEE-STCTTCS-HHHHHCTST--ST--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHHHH CS
  Glycos_transf_3   2 kdlvDivgTGGdgantfNiStaaaivvAaaGvkvakhgnrsvssksGsaDvLealgvnleltpeeveklleevgvgflfapeyhkamkhvapvr 95 
                      +++vDivgTGGdg+n fN+Sta+a+v+AaaGv++akhgnr+vs +sGs+DvL  +gv+l+ ++ ++ k++++ g+gflfap++h+am+h+++vr
       EGE27015.1  93 PNAVDIVGTGGDGSNLFNVSTASAFVAAAAGVTIAKHGNRGVSTSSGSSDVLSLAGVRLDINKTQTVKAINTLGIGFLFAPNHHPAMRHAVGVR 186
                      689******************************************************************************************* PP

                      HHHTT.-SSHHHCHHHHHT..SEEEEHHHHHHHHTCHSEEEEEEEESTTSSCCS.TSHHHHHHHHHHHHHHHHTTEEEEEEEEEGSSTSSSEEE CS
  Glycos_transf_3  96 relgirTvfnlLGPLinparvkkqllgvyskelaeklaevlkelgveralvvhg.dGldevsllakttvaelkdgeiteytlepedfglkrael 188
                      r l++rT+fn+LGPL+npa+v+++++gv+s+el+e+la v+++lg ++++vvh+ dGlde+sl++ t+vaelkdg++++y  +ped+g+ +++l
       EGE27015.1 187 RLLKVRTIFNILGPLTNPAKVSRAVVGVFSPELCEPLAYVFAKLGLTHVMVVHSqDGLDEFSLATGTHVAELKDGKVHTYLCQPEDVGIVSRTL 280
                      ********************************************************************************************** PP

                      SHHHHSSHHHHHHHHTTHHTSCHHHHH....HHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHTSHH CS
  Glycos_transf_3 189 ealeggepkenaeilkavlegkksaak....rdlvllnagaalvlagkadslkegvakaeevidsGkA 252
                        l ++++k+++ei+k++l g+ ++      r ++++nagaa+++ag+a++ +egva a+++++s +A
       EGE27015.1 281 YGLTVNDSKQSLEIIKNALGGTANDDIslkaRAMIAINAGAAIYVAGHAKTHAEGVAIAKQIMTSRQA 348
                      *********************98874457779******************************998776 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.6   4.6e-19   4.1e-15       3      61 ..      25      83 ..      23      85 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 4.6e-19
                     HHHHHHTT.---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHH CS
  Glycos_trans_3N  3 iikklrdgeeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkGetaeEiaalaeAmre 61
                     ++  l+++ eLt +e+r+++  i++g+ +da ++A L+Alr+kGe+ +Ei+ +a+ m+e
       EGE27015.1 25 ALSHLLKNIELTHDEMRQVMLIIMQGRCPDALMGAILIALRQKGESIDEITTCAKTMIE 83
                     677899999************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2723.97
//
Query:       EGE27016.1  [L=207]
Description: anthranilate synthase component II [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-49  168.9   0.0    1.2e-49  168.7   0.0    1.0  1  GATase         Glutamine amidotransferase class-I
      2e-11   44.1   0.8    3.7e-11   43.2   0.8    1.4  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.7   0.0   1.3e-53   1.2e-49       2     188 ..       4     191 ..       3     193 .. 0.95

  Alignments for each domain:
  == domain 1  score: 168.7 bits;  conditional E-value: 1.3e-53
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekeke 99 
                 +iDny s+t+n+v+++ el+ +++++++d+  + ++ ++  p++i++ +Gp+sp+ ++ ++e++ ++ + kiPiLGICLG+Q+++++fg++vv++  + 
  EGE27016.1   4 MIDNYCSFTYNIVQYFGELQQEMTIWRNDEATLDQI-IKLAPQAIVLGPGPCSPNeAGVTLEILDKLSG-KIPILGICLGHQAIGQAFGGQVVRAG-EA 99 
                 89***************************8666554.689*****************************.**************************.9* PP

                 EEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTE....EEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHH CS
      GATase 100 hhggtmrlgddetallyglknevierhrHryevnpkelepaglevtaksedde....elmeiiekknpfvgvQFHPEststpegpellfnfli 188
                 +hg  + +++++++++ + +n+++++++H++++++ +++p++levta++++ +    e+m++++k+  + gvQFHPEs++++ g +ll+nfl 
  EGE27016.1 100 MHGRLSSVHHTNQGVFADIPNSFNATRYHSLVIDK-ASLPDCLEVTAWTAHVDgrmqEIMGVRHKSLDVEGVQFHPESILSEYGYQLLNNFLK 191
                 **********************************8.99***********98777899*********************************986 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.8   4.1e-15   3.7e-11     102     216 .]      69     175 ..      58     175 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 4.1e-15
  Peptidase_C26 102 lergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaike..laeelrveAvae..D 193
                    l+ ++PilgiC+G+q +  a+GG+++++ e+    +    h       +v+ ++++++a++ +  +++ + +H+  i++  l + l+v+A+++  D
     EGE27016.1  69 LSGKIPILGICLGHQAIGQAFGGQVVRAGEA----M----H---GRLSSVHHTNQGVFADIPN--SFNATRYHSLVIDKasLPDCLEVTAWTAhvD 151
                    6779********************9998884....2....2...2345799999*******98..9************98899*******98889* PP

  Peptidase_C26 194 gviEaieseeak.afvlgvQwHPE 216
                    g +  i   ++k   v gvQ+HPE
     EGE27016.1 152 GRMQEIMGVRHKsLDVEGVQFHPE 175
                    *9977666666648899******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1570.78
//
Query:       EGE27017.1  [L=127]
Description: aspartate alpha-decarboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-53  177.4   2.1    8.3e-53  177.2   2.1    1.0  1  Asp_decarbox  Aspartate decarboxylase


Domain annotation for each model (and alignments):
>> Asp_decarbox  Aspartate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   2.1   4.6e-57   8.3e-53       1     114 [.       1     114 [.       1     115 [. 0.99

  Alignments for each domain:
  == domain 1  score: 177.2 bits;  conditional E-value: 4.6e-57
                   XEEEEEEEEEEEEEXXEEETTXXXXEEEEHHHHHHCT--TTBEEEEEETTT--EEEEEEEEESTTTT-EEEEGGGGGG--TT-EEEEEEEEEEEHHH CS
  Asp_decarbox   1 mlrtllksKihratvteaelnYeGSitideelleaagileyekvqvvnvnngeRletYvikgergsgviclnGaaarlvqvgdkviiiayaqleeee 97 
                   m rtll +Kihratvtea+lnY+GSitid +ll+aagil +ekv++vn+nngeR+etY+i+gergsgv+clnGaaar+vq+gd vii+ y ++++ +
    EGE27017.1   1 MIRTLLGGKIHRATVTEANLNYVGSITIDVDLLDAAGILVNEKVSIVNNNNGERFETYTIAGERGSGVVCLNGAAARKVQPGDVVIIMNYVMMQDID 97 
                   899********************************************************************************************** PP

                   HHH---EEEEE-TTS-E CS
  Asp_decarbox  98 akelkpkvvlvdeknri 114
                   a+++kp+vvlvd++n+i
    EGE27017.1  98 AQNHKPNVVLVDANNHI 114
                   ***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 970.74
//
Query:       EGE27018.1  [L=347]
Description: dodecanoyltransferase LpxL [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-61  207.7   0.3    2.5e-61  207.4   0.3    1.0  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera


Domain annotation for each model (and alignments):
>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4   0.3   1.4e-65   2.5e-61       2     295 .]      36     337 ..      35     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: 207.4 bits;  conditional E-value: 1.4e-65
  Lip_A_acyltrans   2 kkfkkellhlrywlvwlgiavllllallPesvlrkilkglgrlaakflkrrrkiarkNLalvfpekseaerekiidksfesvgraivetirvaf 95 
                      k f++++lh++yw+vwl  a++l l +lP ++   i+k+lg+l+ +++k+r ++ ++NL+l fp++++ + ++ +++ f + g+ i+e   ++f
       EGE27018.1  36 KSFEWAFLHPKYWGVWLAFALILPLIFLPLRWQFWIGKRLGILVHYLAKSRVQDTLTNLQLTFPNQPKSKHKATARQVFINQGIGIFESLCAWF 129
                      5799*****************************************************************************************9 PP

  Lip_A_acyltrans  96 isdeeiakrveviglehikealaeeegvilllpHfanwelaglvlakqypglavvaenkknpllnqliislRerfggkllprknaikelikalr 189
                      ++ +  ++ +++ gl h+ +a+++++ vill++H  +++l+g++ ++      v+++++ npll++ i + R+r   + +   + +k+li +l+
       EGE27018.1 130 RP-NVFKRTFSISGLQHLIDAQKQNKAVILLGGHRTTLDLGGRLCTQFFAADCVYRPQN-NPLLEWFIYNARRRIFDEQISNRD-MKKLITRLK 220
                      97.57999***********************************9999888877777777.**************9999999999.********* PP

  Lip_A_acyltrans 190 kgevvvllpDqdlgrkdsvfvpfFgepaatttspaklalktk....aavipvaiirk.kdg......skytvsvhPaldlssteDveqiaqaln 272
                      +g+++++ pDqd+g +++v + fFg+paat t+  +l +         +i + ++r+ +d+       +y++s+++al+ ++ +D+++ a+++n
       EGE27018.1 221 QGRIIWYSPDQDFGLEHGVMATFFGVPAATITAQRRLIKLGDkanpPVIIMMDMLRQtPDYiakgyrPHYHISLSAALKNYPSDDETADAERIN 314
                      *********************************999988655211334666666665245577778889************************* PP

  Lip_A_acyltrans 273 eilekeitaaPeqylwlhrrfkt 295
                      +++e++i+++ +q++w+hrrfkt
       EGE27018.1 315 RLIEQNIQKDLTQWMWFHRRFKT 337
                      **********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2679.12
//
Query:       EGE27019.1  [L=647]
Description: ABC transporter ATP-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-49  166.8   1.0    2.3e-25   89.7   0.0    3.4  3  ABC_tran       ABC transporter
    8.7e-17   61.9  11.7    0.00028   20.8   0.2    4.2  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    1.9e-16   60.0  10.1    1.9e-16   60.0  10.1    2.1  1  ABC_tran_CTD   ABC transporter C-terminal domain
    2.1e-09   37.2   2.2      0.028   13.9   0.0    4.0  3  SMC_N          RecF/RecN/SMC N terminal domain
    9.7e-08   31.9   7.1    5.3e-06   26.4   1.0    3.0  3  ABC_tran_Xtn   ABC transporter
    6.7e-07   29.4   0.5      0.009   15.9   0.5    2.6  2  RsgA_GTPase    RsgA GTPase
    1.4e-06   28.4   0.4      0.022   14.8   0.1    2.9  2  MMR_HSR1       50S ribosome-binding GTPase
    1.4e-06   27.9   0.6      0.025   14.3   0.0    2.5  2  AAA_29         P-loop containing region of AAA domain
    3.9e-06   27.2   0.9      0.071   13.4   0.1    3.7  2  AAA_22         AAA domain
    8.3e-06   25.6   0.0     0.0076   15.9   0.0    2.2  2  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    2.6e-05   24.2   0.0       0.24   11.3   0.0    2.5  2  NACHT          NACHT domain
    0.00011   22.8   0.3        0.9   10.1   0.0    2.8  2  AAA_18         AAA domain
     0.0002   21.8   0.0        1.2    9.5   0.0    3.0  2  AAA            ATPase family associated with various cellular
    0.00022   21.7   0.6        0.3   11.5   0.0    2.9  2  AAA_16         AAA ATPase domain
     0.0003   21.0   0.5       0.33   11.2   0.1    2.9  2  Roc            Ras of Complex, Roc, domain of DAPkinase
     0.0004   19.9   0.1       0.42   10.1   0.1    2.4  2  AAA_7          P-loop containing dynein motor region
    0.00061   20.1   0.0        0.3   11.5   0.0    2.6  2  RNA_helicase   RNA helicase
    0.00071   19.3   0.8        1.1    8.9   0.0    3.5  3  AAA_30         AAA domain
    0.00076   18.7   0.2       0.25   10.5   0.2    2.4  2  NB-ARC         NB-ARC domain
    0.00098   18.9   0.6       0.16   11.7   0.1    3.0  2  AAA_24         AAA domain
     0.0011   18.7   4.3        0.3   10.8   0.3    2.7  2  AAA_15         AAA ATPase domain
     0.0025   17.8   0.4        1.8    8.6   0.1    2.5  2  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
     0.0041   17.0   2.7        1.1    9.1   0.2    3.0  3  NTPase_1       NTPase
     0.0059   15.6   0.1        1.3    7.9   0.0    2.4  2  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
     0.0068   16.4   0.1        1.4    8.9   0.0    2.7  2  AAA_5          AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.016   15.1   0.4        1.1    9.2   0.2    2.6  2  MobB           Molybdopterin guanine dinucleotide synthesis p
      0.018   14.0   0.7       0.35    9.7   0.0    2.4  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
       0.03   14.1   0.3        3.3    7.5   0.1    2.4  2  PduV-EutP      Ethanolamine utilisation - propanediol utilisa
      0.031   13.2   1.0      0.047   12.6   0.0    1.7  2  AAA_10         AAA-like domain
      0.035   13.2   0.1          2    7.5   0.0    2.4  2  DUF815         Protein of unknown function (DUF815)
       0.04   13.5   0.1        3.7    7.0   0.1    2.5  2  GTP_EFTU       Elongation factor Tu GTP binding domain
      0.043   14.0   0.2       0.16   12.2   0.1    2.0  1  DUF2666        Protein of unknown function (DUF2666)
      0.046   13.3   0.3         15    5.1   0.0    3.4  3  AAA_25         AAA domain
      0.055   13.8   1.2        1.9    8.8   0.1    3.0  2  AAA_19         AAA domain
      0.074   12.3   0.4        2.2    7.5   0.1    2.5  2  Septin         Septin
       0.12   12.4  10.6       0.23   11.5   0.0    3.7  4  DUF87          Helicase HerA, central domain
       0.34   11.0   5.0          9    6.5   0.0    2.9  2  AAA_33         AAA domain
       0.43   10.6   2.6         35    4.4   0.0    3.4  3  Dynamin_N      Dynamin family
        1.7    9.1  22.5       0.79   10.2   2.1    3.9  4  AAA_23         AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   5.1e-28   2.3e-25       1     137 []      19     183 ..      19     183 .. 0.78
   2 !   73.0   0.0   7.3e-23   3.4e-20       2     137 .]     339     474 ..     338     474 .. 0.89
   3 ?    0.6   0.0       1.7   7.7e+02      37      74 ..     566     605 ..     561     640 .. 0.69

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 5.1e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG..B-HHHCCHCE.EEE-SS.--S-TTSBHHHH............... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx..xxxxxxxxxx.xxxxxx.xxxxxxxxxxxx............... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke..qeleslrkei.gvlpqe.pqlfpeltvren............... 79 
                 l+ v+++lk++e+v ++G+nG GKStL+kl++++ + + Geil++ g+++ +  q+ +  ++++  v+ +  +++ + l+++ +               
  EGE27019.1  19 LDGVHFTLKPNERVCLIGRNGEGKSTLFKLIMRQIHADDGEILIKdGTKIAMlaQDVPNESASVlDVVMEGdDKVAQALKNYHQasakcamgdneacdv 117
                 789*****************************************999***9966444444333312333324555555555555889999888888888 PP

                 ..............HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..............esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                               + ++++ ++++++gl+   d  +    s+LSgG k+rv la+al+++p++lllDEpt+
  EGE27019.1 118 msglqqtldalngwDLERRARALIDSMGLDA--DACL----STLSGGRKRRVLLAQALVTNPDVLLLDEPTN 183
                 8777777777777666666777777777666..6666....******************************8 PP

  == domain 2  score: 73.0 bits;  conditional E-value: 7.3e-23
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx........xxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren........esdeeiekal 89 
                 k+ s  l +g kv+i+G+nG GK+tL+k ++gl +   ++G+++l            ++ +i+++ q  + l+pe+++++n        +   + +++l
  EGE27019.1 339 KDFSTLLVRGDKVGIIGKNGVGKTTLIKSILGLDDSaiQSGSVKLG-----------TNLNIAFFDQLkDDLDPEKSIADNvsegsdhvDVGGKTTHIL 426
                 677788899************************9998899999444...........68899999998899**********9877665544455***** PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 s l++  ++ +++++  + LSgG+k rv la++llk +++l+lDEpt+
  EGE27019.1 427 SYLQDFLFTPNRARTPVKALSGGEKARVLLAKLLLKPANVLVLDEPTN 474
                 *************9999******************************8 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 1.7
                 -SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS.--S-TTS CS
                 xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx.xxxxxxx RF
    ABC_tran  37 pteGeilldgkdlke...qeleslrkeigvlpqe.pqlfpel 74 
                 p++G  +  +++l++   +ele l +ei+ l+qe +ql +++
  EGE27019.1 566 PQSGVAQ--KRKLSYkeqRELEDLPNEIAALEQEqAQLAKKI 605
                 5666553..4444444478899999*******9966665554 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00052      0.24       3      35 ..      33      59 ..      32      80 .. 0.76
   2 !   20.8   0.2   6.2e-07   0.00028     226     301 ..     144     213 ..     109     215 .. 0.79
   3 !   20.3   1.7   8.5e-07   0.00039       3      69 ..     352     415 ..     351     419 .. 0.79
   4 !   15.8   0.1   2.1e-05    0.0095     190     303 .]     400     506 ..     387     506 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00052
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegltde 35
                +liG+Ng GKS+L++++      +r ++ +  e
  EGE27019.1 33 CLIGRNGEGKSTLFKLI------MRQIHADDGE 59
                79***************......5555555444 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 6.2e-07
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 +g + + +++ lS G kr   l+ al   +   ++ll+DEp n+L+ + ++ l ++l +++     v++ +H+  +
  EGE27019.1 144 MGLDADACLSTLSGGRKRRVLLAQALVTNP---DVLLLDEPTNHLDIESITWLEKFLLNER---LTVLFISHDRKF 213
                 555666667777999999977777887777...9*************99999999996664...6*******9655 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 8.5e-07
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqg 69 
                 ++iG+Ng+GK++L++ + +l   d+ ++++  +l+ + +i+  + l d  dpe++++  ++  +s++
  EGE27019.1 352 GIIGKNGVGKTTLIKSILGLD--DSAIQSGSVKLGTNLNIAFFDQLKDDLDPEKSIADNVS-EGSDH 415
                 69***************9995..67777777777777888888888888888888887777.66665 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 2.1e-05
      AAA_21 190 rslklveielsdlgegeeliasvderlrer.......gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllel 281
                 ++ k + +++s   + ++           +        + fl  +++  +p+  lS G k    l+ +ll  +    +l++DEp n L+ + l+ l ++
  EGE27019.1 400 DPEKSIADNVSEGSDHVDVGG--------KtthilsyLQDFLFTPNRARTPVKALSGGEKARVLLAKLLLKPA---NVLVLDEPTNDLDMATLKLLEDF 487
                 333333444444444444444........14444445999********************9999999999888...89*****************99** PP

      AAA_21 282 lkelsrngaQviltTHSpllld 303
                 + + +     v+l +H+  ++d
  EGE27019.1 488 VVNFKG---TVLLISHDRAFMD 506
                 *88866...9******977765 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0  10.1   4.2e-19   1.9e-16       1      68 [.     575     643 ..     575     644 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 4.2e-19
  ABC_tran_CTD   1 klsykeqreleeleaeIeaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLeelyerWeeLe 68 
                   klsykeqrele l++eI+aLE+e+a+l ++++d + ++++ ++ +++ ++l e+++ L  ++erW eLe
    EGE27019.1 575 KLSYKEQRELEDLPNEIAALEQEQAQLAKKIEDGSWFNTDlAAATKAGERLVEIDELLMMKLERWDELE 643
                   9************************************6666***************************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0017      0.78      27     203 ..      32     215 ..      21     226 .. 0.56
   2 !   10.3   0.1   0.00075      0.35      26      53 ..     350     374 ..     328     383 .. 0.75
   3 !   13.9   0.0   6.1e-05     0.028     134     212 ..     443     515 ..     386     520 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--......BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihk......skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkev. 118
                  +++G+NG GKs l+  i+        +++ +++ + li+        ++    ++a+v  ++ + d+k       v    + +++ + + ++ ++e+ 
  EGE27019.1  32 VCLIGRNGEGKSTLFKLIM--------RQIHADDGEILIKDgtkiamLAQDVPNESASVLDVVMEGDDK-------VAQALKNYHQASAKCAMGDNEAc 115
                 57899*******9999994........445555555555542222222344444555554444444443.......33333333333333333222210 PP

                 -H.HHHHHHHHCTT-STT........................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE CS
                 xx.xxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 119 tk.kevsellesagiske........................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf 192
                    + +++ l       +                        +LSgG k  v     +A   v    + llDe   +LD + ++ + ++l +++    +
  EGE27019.1 116 DVmSGLQQTLDAL----NgwdlerraralidsmgldadaclsTLSGGRKRRVL----LAQALVTNPDVLLLDEPTNHLDIESITWLEKFLLNER--LTV 204
                 1112222222111....111112335555555555555777799999997443....3433444555678999999999999999999998888..788 PP

                 EEE-SSHHHCC CS
                 xxxxxxxxxxx RF
       SMC_N 193 ivislreemle 203
                 + is++++++ 
  EGE27019.1 205 LFISHDRKFID 215
                 88888887765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00075
                 EEEEEESTTSSHHHHHHHHHHHCTT.TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersa 53 
                    i+G+NG GK+ l+ +i   LG +++
  EGE27019.1 350 KVGIIGKNGVGKTTLIKSI---LGLDDS 374
                 467****************...776554 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 6.1e-05
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvt 212
                  ++LSgGek+ v    l+A    kpa + +lDe    LD +  k + +++ + +    ++ is+++ ++ ++ +   v+
  EGE27019.1 443 VKALSGGEKARV----LLAKLLLKPANVLVLDEPTNDLDMATLKLLEDFVVNFK--GTVLLISHDRAFMDNVVTQTWVF 515
                 449******855....5666689***************************9998..889999**999999887666555 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   1.0   1.2e-08   5.3e-06       2      75 ..     223     299 ..     222     308 .. 0.85
   2 !    7.6   0.0    0.0085       3.9       7      32 ..     524     549 ..     521     560 .. 0.82
   3 ?   -1.0   0.5       3.9   1.8e+03      34      52 ..     578     596 ..     567     637 .. 0.64

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.2e-08
  ABC_tran_Xtn   2 elengklteYk.....GnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiek 75 
                   el++g+l  Y+     G Y +y e k+ +l+ ++k++++  k+++++e +I++  +  ++ ++ + r++aL+ + +  k
    EGE27019.1 223 ELDRGQLSGYDvtqgvGGYARYQELKALELASEEKSFAEFDKKLAQEEVWIRQGIK--ARRTRNEGRVRALKAMREERK 299
                   788888888854444499************************************99..89999***********55333 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0085
  ABC_tran_Xtn   7 klteYkGnYseyleekeerleqqqka 32 
                    + eY G Y++y+++ e+ l++ + +
    EGE27019.1 524 IVLEYVGGYEDYVQQHERWLAHHATD 549
                   5679*************999877655 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.9
  ABC_tran_Xtn  34 ekqqkeikkleefIerfra 52 
                    k+q+e+++l + I+ + +
    EGE27019.1 578 YKEQRELEDLPNEIAALEQ 596
                   4444444444444443333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00092      0.42      93     131 ..      22      61 ..       5      66 .. 0.81
   2 !   15.9   0.5     2e-05     0.009      77     134 ..     325     383 ..     301     389 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00092
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  ++  lk  + ++l+G  G GKStL + ++ + ++  ge+ 
   EGE27019.1  22 VHFTLKPnERVCLIGRNGEGKSTLFKLIMRQIHADDGEIL 61 
                  566677658899****************999988888875 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2e-05
                  SEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S------ CS
  RsgA_GTPase  77 yevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsekl 134
                  ++ l+++ ++k+ +++ ++ll   + + ++G+ GvGK+tLi+++l+ ++ ++++ s kl
   EGE27019.1 325 VNHLTLEYDNKTLVKDFSTLLVRgDKVGIIGKNGVGKTTLIKSILGLDDSAIQSGSVKL 383
                  4556666677778888888776558899******************9888888766665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0     0.001      0.47       1      22 [.      31      52 ..      31      85 .. 0.87
   2 !   14.8   0.1   4.8e-05     0.022       1      24 [.     350     375 ..     350     425 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.001
                EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge 22
                +v+++Gr   GKStL++ ++++
  EGE27019.1 31 RVCLIGRNGEGKSTLFKLIMRQ 52
                699**************99986 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.8e-05
                 EEEEEESTTSSHHHHHHHHHT..STE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg..eka 24 
                 +v+i+G+  vGK+tLi++++g  + a
  EGE27019.1 350 KVGIIGKNGVGKTTLIKSILGldDSA 375
                 69*****************9843233 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.5e-05     0.025      13      39 ..      20      46 ..      18      51 .. 0.88
   2 !   11.1   0.4   0.00056      0.26      23      41 ..     348     367 ..     334     371 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.5e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                dg  +++++++ + l+G++G GKSTl+
  EGE27019.1 20 DGVHFTLKPNERVCLIGRNGEGKSTLF 46
                6777899999999************97 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00056
      AAA_29  23 g.atlltGpsGsGKSTllDA 41 
                 g  + ++G++G+GK+Tl+ +
  EGE27019.1 348 GdKVGIIGKNGVGKTTLIKS 367
                 446779***********965 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0056       2.6       9     110 ..      33     191 ..      28     214 .. 0.54
   2 !   13.4   0.1   0.00015     0.071      10     125 ..     353     495 ..     350     503 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0056
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee....................erpevvfvtlpsstsskdllrellralglelka................. 70 
                 +++G  G GK+tl + +++q +++    +                    e+++v+ v + ++ + ++ l++  +a      +                 
  EGE27019.1  33 CLIGRNGEGKSTLFKLIMRQIHAD----DgeilikdgtkiamlaqdvpnESASVLDVVMEGDDKVAQALKNYHQASA----Kcamgdneacdvmsglqq 123
                 799****************98644....2335577676666666666664444444333333333333333333333....022234444444444444 PP

      AAA_22  71 ........................erlsseell.ealeqalrarav...ielliiDEaqh.lrseeale 110
                                         + + ++ l   + ++ l a+a    + +l++DE  + l   e ++
  EGE27019.1 124 tldalngwdlerraralidsmgldADACLSTLSgGRKRRVLLAQALvtnPDVLLLDEPTNhL-DIESIT 191
                 44444445555555555555555544455555555555555555555555666666655556.444444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00015
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee........................erpevv........fvtlpsstsskdllrellralglelkaerlsse 76 
                 ++G  G+GKTtl++ +l  +d +++                                +        +v++ ++t  + +l+ l  +l  ++ a r   +
  EGE27019.1 353 IIGKNGVGKTTLIKSILGLDDSAIQSGSvklgtnlniaffdqlkddldpeksI----AdnvsegsdHVDVGGKT--THILSYLQDFLFTPNRA-RTPVK 444
                 89*****************9988877779999999998888888888644330....24334443444444444..77777777777777777.55555 PP

      AAA_22  77 ell.ealeqalrarav...ielliiDEaqh.lrseealeeLrsllnlsrkgvql 125
                 +l     ++ l a+       +l++DE  + l  ++ l+ L +++    ++ ++
  EGE27019.1 445 ALSgGEKARVLLAKLLlkpANVLVLDEPTNdL-DMATLKLLEDFVV--NFKGTV 495
                 55555555555555556666699999999999.7888888877766..444444 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0058       2.7       9      50 ..      24      65 ..      18     141 .. 0.79
   2 !   15.9   0.0   1.7e-05    0.0076       9      60 ..     343     632 ..     337     646 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0058
                 S-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  9 fpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiG 50
                 f++   +r++++g +g Gk+++ + +++q ++dd  i++  G
   EGE27019.1 24 FTLKPNERVCLIGRNGEGKSTLFKLIMRQIHADDGEILIKDG 65
                 56666789*********************9998644444433 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.7e-05
                  S-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEE.......................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................................... RF
  ATP-synt_ab   9 fpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvg.......................................................... 48 
                  + +v+G +++i+g++gvGkt++++s++   +s+   i  g                                                          
   EGE27019.1 343 TLLVRGDKVGIIGKNGVGKTTLIKSILGLDDSA---IQSGsvklgtnlniaffdqlkddldpeksiadnvsegsdhvdvggktthilsylqdflftpn 437
                  5589**********************9885444...44444444466666666666666666666666666666666666666666666666666666 PP

                  .................................................................................................. CS
                  .................................................................................................. RF
  ATP-synt_ab  49 .................................................................................................. 48 
                                                                                                                    
   EGE27019.1 438 rartpvkalsggekarvllaklllkpanvlvldeptndldmatlklledfvvnfkgtvllishdrafmdnvvtqtwvfdtdkygdgivleyvggyedy 535
                  66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP

                  .....................................................................................ESEEHHHHHHHH CS
                  .....................................................................................xxxxxxxxxxxx RF
  ATP-synt_ab  49 .....................................................................................iGergnevaevl 60 
                                                                                                        Ger  e+ e+l
   EGE27019.1 536 vqqherwlahhatdnkpkatkpaepiqikppqsgvaqkrklsykeqreledlpneiaaleqeqaqlakkiedgswfntdlaaatkAGERLVEIDELL 632
                  6666666666666666666666666666666666666666666666666666666555555555555555555555555555555555555555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00092      0.42       2      27 ..      31      56 ..      30      60 .. 0.88
   2 !   11.3   0.0   0.00053      0.24       4      21 ..     352     369 ..     349     469 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00092
                CEEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaeg 27
                 v+l G++G GK+tL + +++++ ++
  EGE27019.1 31 RVCLIGRNGEGKSTLFKLIMRQIHAD 56
                699****************9988765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00053
                 EEEC-TTTCHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqkla 21 
                  + G++G+GKTtL++++ 
  EGE27019.1 352 GIIGKNGVGKTTLIKSIL 369
                 689************996 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0     0.002       0.9       1      70 [.      32     108 ..      32     144 .. 0.80
   2 !    9.9   0.0    0.0022         1       1      19 [.     351     372 ..     351     433 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.002
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..gvnlrdvakenglllevdpealdeskrldedkldklldaleenss.....a 70 
                 ++l G  G GK+tl k + +  +   g++l++  ++  +l  + p++  + + ++++ +dk+ +al++  +     a
  EGE27019.1  32 VCLIGRNGEGKSTLFKLIMRQIHAddGEILIKDGTKIAMLAQDVPNESASVLDVVMEGDDKVAQALKNYHQasakcA 108
                 799999************99974477888888888888888888889999999999999999999999776555553 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0022
      AAA_18   1 IlltGtpGvGKttlakeL...s 19 
                 +++ G+ GvGKttl k +    
  EGE27019.1 351 VGIIGKNGVGKTTLIKSIlglD 372
                 689************9984441 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0027       1.2       1      54 [.      32     101 ..      32     109 .. 0.66
   2 !    8.8   0.1    0.0046       2.1       3      19 ..     353     369 ..     351     392 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0027
                 EEEESSTTSSHHHHHHHHHHHHT...HEEEEEETTTCSSS..............STTHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg...vefleisgsellsk..............yvgesekkirelfkeak 54 
                 v+l+G  G GK++l k ++++++    e+l  +g+++  +              +v e+ +k+++ +k+  
  EGE27019.1  32 VCLIGRNGEGKSTLFKLIMRQIHaddGEILIKDGTKIA-MlaqdvpnesasvldVVMEGDDKVAQALKNYH 101
                 79*******************96223445555555555.33444555555566667777777777766654 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0046
                 EESSTTSSHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakava 19 
                 ++G  G+GKT+l+k++ 
  EGE27019.1 353 IIGKNGVGKTTLIKSIL 369
                 68************996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.011         5      25      54 ..      30      59 ..      18     180 .. 0.79
   2 !   11.5   0.0   0.00065       0.3      29     158 ..     353     487 ..     343     498 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.011
      AAA_16 25 elvllsGesGvGKsslvrellralekdggi 54
                e v l+G  G GKs+l + ++r++ +d+g 
  EGE27019.1 30 ERVCLIGRNGEGKSTLFKLIMRQIHADDGE 59
                56889*******************999543 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00065
      AAA_16  29 lsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde.aesaeleawrekleeala.................... 106
                 ++G  GvGK++l++++l  l ++   +++   ++l+++      ++++++++l  +l+ e + ++++++ +++ +   +                    
  EGE27019.1 353 IIGKNGVGKTTLIKSIL-GLDDS---AIQSGSVKLGTN------LNIAFFDQLKDDLDPEkSIADNVSEGSDHVDV--Ggktthilsylqdflftpnra 439
                 89***************.57776...366666666333......33333444444444443112222222221111..123444555556888886666 PP

      AAA_16 107 ..avpelagaeasrllellkrllallsrderplvlvlDd.lqwadeaslqllaaL 158
                   +v++l+g e+ r   ll++ll  l++ +   vlvlD+   ++d a+l+ll+ +
  EGE27019.1 440 rtPVKALSGGEKAR--VLLAKLL--LKP-AN--VLVLDEpTNDLDMATLKLLEDF 487
                 66666666664433..3444555..333.43..8888862447777888887765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.014       6.3       1      24 [.      31      54 ..      31     107 .. 0.87
   2 !   11.2   0.1   0.00072      0.33       1      21 [.     350     370 ..     350     398 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.014
                EEEEESSTTSSHHHHHHCHCT-CC CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkf 24
                +v+l+G +g GK++l+k ++++  
  EGE27019.1 31 RVCLIGRNGEGKSTLFKLIMRQIH 54
                699*************99987654 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00072
                 EEEEESSTTSSHHHHHHCHCT CS
         Roc   1 KvvlvGdsgvGKtsllkrfve 21 
                 Kv ++G++gvGKt+l+k+++ 
  EGE27019.1 350 KVGIIGKNGVGKTTLIKSILG 370
                 899*************99874 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0071       3.3      29      60 ..      25      56 ..      21      74 .. 0.88
   2 !   10.1   0.1   0.00092      0.42      27      62 ..     342     376 ..     330     391 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0071
       AAA_7 29 llknkkpvllvGptGtGKtviikdllkkldke 60
                 lk +  v+l+G  G GK+++ k ++++++ +
  EGE27019.1 25 TLKPNERVCLIGRNGEGKSTLFKLIMRQIHAD 56
                5778899*****************99998865 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00092
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkldkeky 62 
                 ++ll ++ +v ++G+ G+GKt++ik++l  ld++ +
  EGE27019.1 342 STLLVRGDKVGIIGKNGVGKTTLIKSILG-LDDSAI 376
                 57788899999**************9884.444555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00065       0.3       1      24 [.      32      55 ..      32     116 .. 0.86
   2 ?    6.1   0.0     0.031        14       3      18 ..     353     368 ..     351     399 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00065
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallk 24
                  ++l G++geGKStl k +++++  
    EGE27019.1 32 VCLIGRNGEGKSTLFKLIMRQIHA 55
                  6899**************999973 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.031
  RNA_helicase   3 lyGpsgeGKStlakeL 18 
                   + G++g+GK+tl+k++
    EGE27019.1 353 IIGKNGVGKTTLIKSI 368
                   78***********994 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0024       1.1      14      54 ..      25      73 ..      21     184 .. 0.78
   2 ?    6.8   0.0     0.011       4.9      21      46 ..     351     377 ..     339     498 .. 0.61
   3 ?   -1.4   0.1       3.5   1.6e+03      81     108 ..     612     642 ..     581     645 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0024
      AAA_30 14 ltsgdrvavltGpAGtGKttalkal.reaweaag.......grviglAp 54
                + +++  ++l G+ G GK+t+ k + r++++++g        ++++lA 
  EGE27019.1 25 TLKPNERVCLIGRNGEGKSTLFKLImRQIHADDGeilikdgTKIAMLAQ 73
                5566667899***************666666667777777767777775 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.011
      AAA_30  21 avltGpAGtGKttalkalreaweaa.g 46 
                 + + G  G GKtt++k++  + ++a +
  EGE27019.1 351 VGIIGKNGVGKTTLIKSILGLDDSAiQ 377
                 5688************99877766643 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.5
      AAA_30  81 k...grarlepg.tllivDEagmvdtkqlaal 108
                 +   + a+ ++g +l+ +DE  m+  + +++l
  EGE27019.1 612 NtdlA-AATKAGeRLVEIDELLMMKLERWDEL 642
                 04432.22333347888888888887776665 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.016       7.4      23      43 ..      32      52 ..      25      59 .. 0.86
   2 !   10.5   0.2   0.00055      0.25      22      41 ..     350     369 ..     334     378 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.016
                EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 23 valvGmgGvGKttlakqilnk 43
                v l G+ G GK+tl+k i+++
  EGE27019.1 32 VCLIGRNGEGKSTLFKLIMRQ 52
                7899************99987 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00055
                 EEEEEESTTSSHHHHHHHHC CS
      NB-ARC  22 vvalvGmgGvGKttlakqil 41 
                  v++ G+ GvGKttl+k+il
  EGE27019.1 350 KVGIIGKNGVGKTTLIKSIL 369
                 478**************997 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.069        32       4      22 ..      31      49 ..      29      67 .. 0.86
   2 !   11.7   0.1   0.00034      0.16       3      22 ..     349     368 ..     347     393 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.069
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                +++++G +g GK+tl k +
  EGE27019.1 31 RVCLIGRNGEGKSTLFKLI 49
                89************98866 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00034
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  k+ i+G++g+GKTtl+k++
  EGE27019.1 349 DKVGIIGKNGVGKTTLIKSI 368
                 5899*************987 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0026       1.2      25      43 ..      31      49 ..      20      79 .. 0.87
   2 !   10.8   0.3   0.00064       0.3      28      45 ..     353     370 ..     339     413 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0026
      AAA_15 25 ltvliGkNnsGKSsileal 43
                  +liG+N+ GKS++ +++
  EGE27019.1 31 RVCLIGRNGEGKSTLFKLI 49
                679************9998 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00064
      AAA_15  28 liGkNnsGKSsilealdl 45 
                 +iGkN++GK+++++ +  
  EGE27019.1 353 IIGKNGVGKTTLIKSILG 370
                 9*************9954 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.016       7.2      19      45 ..      29      55 ..      11      61 .. 0.82
   2 !    8.6   0.1    0.0038       1.8       9      40 ..     336     369 ..     329     387 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.016
                TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglakalgv 45
                ++ ++L G  G GK+tl + ++++++ 
  EGE27019.1 29 NERVCLIGRNGEGKSTLFKLIMRQIHA 55
                5569******************99865 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0038
                 HHHHHHHHCH..TEEEEEEESTTSSHHHHHHHHH CS
        TsaE   9 algkklakal..gdvilLeGdLGaGKTtlvrgla 40 
                 +l k++ + l  gd + + G+ G+GKTtl+++++
  EGE27019.1 336 TLVKDFSTLLvrGDKVGIIGKNGVGKTTLIKSIL 369
                 455556554566888999*************996 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.012       5.7       2      26 ..      32      56 ..      31      61 .. 0.86
   2 ?   -2.4   0.1       8.6     4e+03      30      78 ..     274     325 ..     264     331 .. 0.58
   3 !    9.1   0.2    0.0024       1.1       2      20 ..     351     369 ..     350     378 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
                EEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkss 26
                v++ G+ G GK+Tl+k ++++++ +
  EGE27019.1 32 VCLIGRNGEGKSTLFKLIMRQIHAD 56
                7899***************998765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8.6
                 EEEEEEEEE-------EEEEEE.T.T--EEEEEETT..---SSEETTEEE-H CS
    NTPase_1  30 vgGfyteevreggrrigFkivd.lasgeegiLarve..akreprvgkyvvdv 78 
                  +G+ +++ r++gr  + k +    + +++ L  v+  ++++ + gk+v +v
  EGE27019.1 274 RQGIKARRTRNEGRVRALKAMReERKARRDVLGTVQisQNNSEKSGKIVCEV 325
                 4788888888777765555443033445555665556556666666666655 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0024
                 EEEE--TTSSHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvl 20 
                 v i G+ GvGKtTl+k +l
  EGE27019.1 351 VGIIGKNGVGKTTLIKSIL 369
                 7899************987 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.021       9.5      30      66 ..      30      74 ..      15      90 .. 0.75
   2 !    7.9   0.0    0.0029       1.3      15      49 ..     334     368 ..     321     375 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.021
                EEEEEEE-TTSSHHHHHHHH........HHHHHCTT--EEEEEE- CS
        MeaB 30 qvvGltGvPGaGkstlveal........glelrrrGkrvavlavD 66
                ++v l G  G Gkstl + +        g+ l++ G+++a+la D
  EGE27019.1 30 ERVCLIGRNGEGKSTLFKLImrqihaddGEILIKDGTKIAMLAQD 74
                7999***********987662222222234588999999999987 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0029
                 HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHH CS
        MeaB  15 akellerllakaGraqvvGltGvPGaGkstlveal 49 
                  k+l++  ++   r  +vG+ G  G+Gk tl++ +
  EGE27019.1 334 NKTLVKDFSTLLVRGDKVGIIGKNGVGKTTLIKSI 368
                 5678888888888999***************9865 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0031       1.4       2      37 ..      32      67 ..      31      86 .. 0.79
   2 ?    4.6   0.1     0.064        29       4      20 ..     353     369 ..     350     375 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0031
                EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT-- CS
       AAA_5  2 vlLvGppGtgKselaerlaaalnreveyvqltrdtt 37
                v+L+G  G gKs+l + + + + +   +++++++t+
  EGE27019.1 32 VCLIGRNGEGKSTLFKLIMRQIHADDGEILIKDGTK 67
                8****************9999866555555555555 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.064
                 EE--SSSSHHHHHHHGG CS
       AAA_5   4 LvGppGtgKselaerla 20 
                 ++G+ G+gK++l+++++
  EGE27019.1 353 IIGKNGVGKTTLIKSIL 369
                 79**********99886 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.15        68       2      28 ..      32      58 ..      31      77 .. 0.85
   2 ?    9.2   0.2    0.0024       1.1       2      23 ..     351     371 ..     350     396 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.15
        MobB  2 lgivgksgsGKTtLleklipelkargl 28
                ++++g++g GK tL + ++++++a + 
  EGE27019.1 32 VCLIGRNGEGKSTLFKLIMRQIHADDG 58
                789************999998887665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0024
        MobB   2 lgivgksgsGKTtLleklipel 23 
                 +gi+gk+g GKTtL++ ++  l
  EGE27019.1 351 VGIIGKNGVGKTTLIKSILG-L 371
                 78*************98774.4 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00076      0.35      16      52 ..      30      66 ..      19     128 .. 0.92
   2 ?    2.1   0.2      0.16        74      18      36 ..     351     369 ..     347     375 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00076
  TrwB_AAD_bind 16 qhilivGttGsGKtqalekllrairargdraivlDlt 52
                   + + ++G  G GK++ ++ ++r+i a    +++ D t
     EGE27019.1 30 ERVCLIGRNGEGKSTLFKLIMRQIHADDGEILIKDGT 66
                   56889****************************9965 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.16
  TrwB_AAD_bind  18 ilivGttGsGKtqalekll 36 
                    + i+G  G GKt+ ++++l
     EGE27019.1 351 VGIIGKNGVGKTTLIKSIL 369
                    789************9987 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.069        32       2      21 ..      30      49 ..      29      56 .. 0.86
   2 ?    7.5   0.1    0.0071       3.3       3      23 ..     350     370 ..     348     378 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.069
   PduV-EutP  2 kkilliGkvgsGKttLtqal 21
                +++ liG+ g GK tL + +
  EGE27019.1 30 ERVCLIGRNGEGKSTLFKLI 49
                6899************9876 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0071
   PduV-EutP   3 killiGkvgsGKttLtqalkg 23 
                 k+ +iGk g+GKttL +++ g
  EGE27019.1 350 KVGIIGKNGVGKTTLIKSILG 370
                 6789************99865 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0    0.0001     0.047      21      59 ..      29      67 ..      19      94 .. 0.87
   2 ?   -3.4   0.4       7.8   3.6e+03      26      41 ..     353     368 ..     349     369 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
      AAA_10 21 asasliiGdlGnGKSvlakllvlyisllggkaliiDpkk 59
                +  + +iG  G+GKS l kl++ +i + +g +li D +k
  EGE27019.1 29 NERVCLIGRNGEGKSTLFKLIMRQIHADDGEILIKDGTK 67
                556789****************************99887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.8
      AAA_10  26 iiGdlGnGKSvlakll 41 
                 iiG+ G GK  l+k +
  EGE27019.1 353 IIGKNGVGKTTLIKSI 368
                 89*********99976 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0043         2      51      80 ..      27      56 ..      22      82 .. 0.85
   2 ?    3.1   0.0     0.097        45      54      74 ..     349     369 ..     309     378 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0043
      DUF815 51 lpannvLLwGarGtGKSslvkallneyaee 80
                +p + v L+G  G GKS+l k ++++++++
  EGE27019.1 27 KPNERVCLIGRNGEGKSTLFKLIMRQIHAD 56
                5677899****************9998876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.097
      DUF815  54 nnvLLwGarGtGKSslvkall 74 
                  +v ++G+ G+GK +l+k++l
  EGE27019.1 349 DKVGIIGKNGVGKTTLIKSIL 369
                 456689************987 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.085        39       5      32 ..      31      58 ..      27      80 .. 0.81
   2 ?    7.0   0.1    0.0081       3.7       6      37 ..     351     382 ..     348     411 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.085
                EEEEEESTTSSHHHHHHHHHHHTTSSCH CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLlyktgaisk 32
                 +++ig    GK+TL   ++ + +a++ 
  EGE27019.1 31 RVCLIGRNGEGKSTLFKLIMRQIHADDG 58
                6899*************99999888765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0081
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgeka 37 
                 +giig    GKtTL+ ++l       ++g+++
  EGE27019.1 351 VGIIGKNGVGKTTLIKSILGLDDSAIQSGSVK 382
                 89****************97776666667666 PP

>> DUF2666  Protein of unknown function (DUF2666)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00035      0.16      21     122 ..     178     280 ..     174     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00035
                 --TTS-HHHHHHHHHHHHHHHHHHHH.HHTT--HHHHHHHTTT--S--S....HHHHHHHHHHHHT-.............---HHHHHHHHHHHHHTTT CS
     DUF2666  21 iDektedleiarlLasieetvskkik.dylpfDlekleeiadeikkkkkgrvkeedisevleklkspattkklnkitdskegkeilkvilarivLerlG 118
                 +De t++l+i  +    +  +++++   ++  D + +   a  i +  +g++   d+++ +  +  ++  k l+   ++k + e+ k +++++v  r G
  EGE27019.1 178 LDEPTNHLDIESITWLEKFLLNERLTvLFISHDRKFIDTLATYIIELDRGQLSGYDVTQGVGGYARYQELKALELASEEKSFAEFDKKLAQEEVWIRQG 276
                 67777777777765544445555554258999******************************************************************* PP

                 --SS CS
     DUF2666 119 iktk 122
                 ik +
  EGE27019.1 277 IKAR 280
                 *975 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.033        15      30      94 ..      26     101 ..      12     164 .. 0.73
   2 ?    3.9   0.1     0.073        34      29      50 ..     344     365 ..     334     369 .. 0.83
   3 ?   -1.3   0.0       3.1   1.4e+03     167     188 ..     479     500 ..     466     502 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.033
      AAA_25  30 lpagelallaGapgtGKttlaldlalava..tGkpwlg..........pvapeqgkVlyvsaEdsedelrrRlravg 94 
                 l  +e + l+G+ g GK+tl   ++  +    G+ + +          +v++e + Vl v+ E++   +++ l+  +
  EGE27019.1  26 LKPNERVCLIGRNGEGKSTLFKLIMRQIHadDGEILIKdgtkiamlaqDVPNESASVLDVVMEGDD-KVAQALKNYH 101
                 56688999************9999999987766655557788888888777899999999999887.4444444333 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.073
      AAA_25  29 llpagelallaGapgtGKttla 50 
                 ll++g+ + ++G  g+GKttl 
  EGE27019.1 344 LLVRGDKVGIIGKNGVGKTTLI 365
                 788999999***********96 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.1
      AAA_25 167 alvealeriarrtgaavllvhH 188
                 a ++ le++  +++ +vll+ H
  EGE27019.1 479 ATLKLLEDFVVNFKGTVLLISH 500
                 56788999999**********9 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.37   1.7e+02      10      38 ..      29      57 ..      23     207 .. 0.85
   2 ?    8.8   0.1    0.0041       1.9      10     126 ..     348     488 ..     342     499 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.37
      AAA_19 10 ekvllvtaGpGtGKTrvlkhivallvelg 38
                ++ +++++  G GK+++ k i++ + +  
  EGE27019.1 29 NERVCLIGRNGEGKSTLFKLIMRQIHADD 57
                5678999*********9999998877655 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0041
      AAA_19  10 ekvllvtaGpGtGKTrvlkhiv...allvelggvkpeeillvaftgrAakelrerlaalgae...........atTiHrlal..............ldf 80 
                  + + +++  G GKT+++k i+     +++ g+vk+ + l +af  +  + l  + + ++ +            +T H l+               +  
  EGE27019.1 348 GDKVGIIGKNGVGKTTLIKSILgldDSAIQSGSVKLGTNLNIAFFDQLKDDLDPEKSIAD-NvsegsdhvdvgGKTTHILSYlqdflftpnrartpV-- 443
                 5667899*************9933345788888888777777776666655554332211.134566666666899998877777655554444442.. PP

      AAA_19  81 ddlltealelle.....eaeeekklqeee.llivDE.fqdvdelqyrLlkall 126
                         ++l      +    k l + + +l+ DE + d+d    +Ll+  +
  EGE27019.1 444 --------KALSggekaRVLLAKLLLKPAnVLVLDEpTNDLDMATLKLLEDFV 488
                 ........333344333111223444555588888855788888888887655 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.21        96       7      32 ..      32      57 ..      24      84 .. 0.80
   2 ?    7.5   0.1    0.0047       2.2       9      29 ..     353     373 ..     350     397 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.21
                EEEEEBTTSSCCCCCCTTSSSS---- CS
      Septin  7 lmvvGesglGkttlintlfetdliee 32
                + ++G++g Gk+tl++ ++++   ++
  EGE27019.1 32 VCLIGRNGEGKSTLFKLIMRQIHADD 57
                5689***********98887765555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0047
                 EEEBTTSSCCCCCCTTSSSS- CS
      Septin   9 vvGesglGkttlintlfetdl 29 
                 ++G++g+Gkttli++++  d+
  EGE27019.1 353 IIGKNGVGKTTLIKSILGLDD 373
                 79*************987655 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00051      0.23      24      59 ..      30      64 ..      24      66 .. 0.91
   2 ?   -0.9   0.4       3.2   1.5e+03     132     207 ..     252     340 ..     238     350 .. 0.65
   3 ?    4.4   1.5     0.076        35      26      44 ..     351     369 ..     346     371 .. 0.92
   4 ?   -1.4   0.0       4.6   2.1e+03      40      59 ..     452     470 ..     451     475 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00051
       DUF87 24 rHlAilgsTGsGKSntvavLleellekkgatililD 59
                ++++ +g+ G GKS++ +++++++   ++++ili D
  EGE27019.1 30 ERVCLIGRNGEGKSTLFKLIMRQIH-ADDGEILIKD 64
                578899*******************.9999999966 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.2
       DUF87 132 eekeklssdepveklleelk................kekeelrklknqaiarlldkledllrkggsfsnsstdliallleklekegkitiid 207
                    e+ s++e+++kl++e                   ++++++++ ++a++ +l +++  +++ ++ ++   ++++l+   le ++k  + d
  EGE27019.1 252 LASEEKSFAEFDKKLAQEEVwirqgikarrtrnegrVRALKAMREERKARRDVLGTVQISQNNSEKSGKIVCEVNHLT---LEYDNKTLVKD 340
                 444555555666655544446777777777777776566677777788888888777777777777777777777777...45555555555 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.076
       DUF87  26 lAilgsTGsGKSntvavLl 44 
                 ++i+g+ G+GK+++++++l
  EGE27019.1 351 VGIIGKNGVGKTTLIKSIL 369
                 89**************997 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 4.6
       DUF87  40 vavLleellekkgatililD 59 
                 ++vLl++ll  k a++l+lD
  EGE27019.1 452 ARVLLAKLL-LKPANVLVLD 470
                 689******.99*******9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0      0.02         9       2      46 ..      32      79 ..      32     130 .. 0.75
   2 ?    6.2   0.1     0.024        11       4      20 ..     353     369 ..     351     380 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.02
      AAA_33  2 vllvGlpGsGKstlaerllkklg...avllssdtlrrrlfgtdqqskt 46
                v l+G +G GKstl + ++++ +   +++l +d  + ++ ++d+++++
  EGE27019.1 32 VCLIGRNGEGKSTLFKLIMRQIHaddGEILIKDGTKIAMLAQDVPNES 79
                5689*************9999888888888888877777776666554 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.024
      AAA_33   4 lvGlpGsGKstlaerll 20 
                 ++G +G+GK+tl++++l
  EGE27019.1 353 IIGKNGVGKTTLIKSIL 369
                 68**********99876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.076        35       1     116 [.      32     151 ..      32     208 .. 0.69
   2 ?    3.0   0.7       0.2        94       1      22 [.     351     372 ..     351     381 .. 0.88
   3 ?    0.2   0.1       1.5   6.8e+02      34      80 ..     559     606 ..     552     640 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.076
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE....CCT---CCS...SSEEEE.T-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEE CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql....geeeeaseravkeelkek.ekkledfsevreeieketekiagankgiskkvillk 94 
                 ++++G   +GKS++   ++++ i   + ++     +++ +      +e+as   v  e  +k ++ l+++ +   ++ +  +++ + ++g ++++  l+
  EGE27019.1  32 VCLIGRNGEGKSTLFKLIMRQ-IHADDGEILIKDGTKIAMlaqdVPNESASVLDVVMEGDDKvAQALKNYHQASAKCAMGDNEACDVMSGLQQTLDALN 129
                 67899999*****99876655.55655555556666666633332222323333333333338888888888888888888888888888888899999 PP

                 EEETTS-SEEEEE---B-SSSG CS
   Dynamin_N  95 ilsllvkgltlvDlPGldsvnk 116
                   +l +    l+D+ Gld  + 
  EGE27019.1 130 GWDLERRARALIDSMGLDADAC 151
                 9999999999999999987665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.2
                 EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlged 22 
                 + ++G+   GK++++ ++lg d
  EGE27019.1 351 VGIIGKNGVGKTTLIKSILGLD 372
                 6799***************965 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.5
                 S-EEEEECCT---CCS...SSEEEE...T-EB--CHHHHHHHHHHHHHHH CS
   Dynamin_N  34 rplelqlgeeeeaseravkeelkek...ekkledfsevreeieketekia 80 
                  p++++  ++  a++  +k ++ke+   e+  +++ ++++e+ +  +ki+
  EGE27019.1 559 EPIQIKPPQSGVAQK--RKLSYKEQrelEDLPNEIAALEQEQAQLAKKIE 606
                 677777777776553..344444443356666666666666655555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1     0.002      0.91      21      39 ..      31      49 ..       4      51 .. 0.72
   2 ?   -2.1   1.0       9.6   4.4e+03     149     175 ..     253     280 ..     205     333 .. 0.55
   3 ?   10.2   2.1    0.0017      0.79      23      39 ..     352     368 ..     330     370 .. 0.86
   4 ?    2.0   2.0      0.56   2.6e+02     167     200 .]     573     606 ..     535     607 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.002
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                 ++++G NG GK+T++  i
  EGE27019.1 31 RVCLIGRNGEGKSTLFKLI 49
                56999**********9876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 9.6
      AAA_23 149 kdkkerleelekeleeled.ekkllekl 175
                 +++++  +e+ k+l ++e  +++ ++++
  EGE27019.1 253 ASEEKSFAEFDKKLAQEEVwIRQGIKAR 280
                 3333333333333333332222222222 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0017
      AAA_23  23 lItGpNGaGKTTildAi 39 
                  I+G+NG GKTT++  i
  EGE27019.1 352 GIIGKNGVGKTTLIKSI 368
                 69************887 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.56
      AAA_23 167 dekkllekleqekekekeleeleeeleeilkele 200
                 ++k   +++ ++++  +e+ +le+e+ ++ k++e
  EGE27019.1 573 KRKLSYKEQRELEDLPNEIAALEQEQAQLAKKIE 606
                 4455566667778888899999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 4329.17
//
Query:       EGE27020.1  [L=76]
Description: putative SlyX protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-16   59.3   0.2    4.7e-16   59.1   0.2    1.1  1  SlyX        SlyX
  ------ inclusion threshold ------
       0.01   15.5   0.1      0.012   15.3   0.1    1.1  1  Lebercilin  Ciliary protein causing Leber congenital amaurosi
      0.013   16.0   0.1      0.014   15.8   0.1    1.0  1  DUF16       Protein of unknown function DUF16
       0.15   12.0   1.0       0.18   11.7   1.0    1.1  1  Prefoldin   Prefoldin subunit


Domain annotation for each model (and alignments):
>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.2   1.1e-19   4.7e-16       5      67 .]      12      76 .]       9      76 .] 0.95

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 1.1e-19
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXX..XXXXXXXX CS
        SlyX  5 leeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgasea..eeepPPHY 67
                l++L+++++f+edt +eL++++a+q++++  lq ql+l+++++++ +++ g ++     ++PPHY
  EGE27020.1 12 LIDLQTRISFLEDTCDELSKIIARQDRDLRDLQDQLKLMYQHIQAKQDDVGIATFdlLADRPPHY 76
                89***********************************************99777789999***** PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.1   2.7e-06     0.012      47      84 ..      18      55 ..      12      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-06
  Lebercilin 47 aLskyedteaeLpqllarhneEvrvlrerlRksqeker 84
                ++s +edt  eL++++ar++ ++r l+++l+ + ++ +
  EGE27020.1 18 RISFLEDTCDELSKIIARQDRDLRDLQDQLKLMYQHIQ 55
                577799************************97766555 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   0.1   3.2e-06     0.014      33      82 ..       9      58 ..       5      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.2e-06
                HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
       DUF16 33 kqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvd 82
                +  L++++++++ l+   ++l +++ +q+  +++l+ + k   +++++ +
  EGE27020.1  9 DFTLIDLQTRISFLEDTCDELSKIIARQDRDLRDLQDQLKLMYQHIQAKQ 58
                557999**********************************9999999443 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0     4e-05      0.18      76     118 ..      16      58 ..      11      60 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  76 eeAiellkkkleelekqlekleeeleklkdqittleanlaqly 118
                 +  i +l++ ++el+k +     +l++l+dq++ + + +++++
  EGE27020.1  16 QTRISFLEDTCDELSKIIARQDRDLRDLQDQLKLMYQHIQAKQ 58 
                 556899**********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1026  (0.0572257); expected 358.6 (0.02)
Passed bias filter:                      780  (0.0435049); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 602.45
//
Query:       EGE27021.1  [L=459]
Description: outer membrane protein E [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-10   40.3   7.8    2.5e-09   36.2   7.8    2.3  1  Toluene_X    Outer membrane protein transport protein (OMPP1/
    7.9e-09   35.9  18.6    0.00098   19.3   0.2    4.3  3  OMP_b-brl    Outer membrane protein beta-barrel domain
      0.001   19.1   5.3        0.4   10.8   0.3    3.9  4  YadA_anchor  YadA-like membrane anchor domain


Domain annotation for each model (and alignments):
>> Toluene_X  Outer membrane protein transport protein (OMPP1/FadL/TodX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   7.8   4.2e-13   2.5e-09      79     404 ..      59     433 ..      34     456 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 4.2e-13
                 .....--BST-SEEEEEEEEEEEEESSSSEEEEEEEEECEEEEEE--T..TSTTCC......CTSEE.EEEEEEEEEEEEEE.SSSSEEEEEEEEEEEE CS
   Toluene_X  79 dtllegnggdaavtalvPnlylvvpindkfafGlsvvapyglateydn..sfaars......lgget.klqtlnlnlslaYr.VndelsvGlgvdavha 167
                 ++++ +++gd+a  +      + + ind f++G+    p+g a +yd   +f a +      +++   + +  +ln slaY+ + + l+   + +   a
  EGE27021.1  59 KDTSGKDTGDIAEAYDFFRYGVKADINDTFSVGVLYDEPFGAAIKYDGnsNFVADKnatatiFAQAInQATKAQLNDSLAYKsIKPVLDSVKSPQRALA 157
                 445556666777766666677777888888888888888888888887555666665555553333313333447778888654555542222222222 PP

                 EEEEEE........EETCHHHHHCSC......................................................CCHCCHHT.TTTTEEEEEE CS
   Toluene_X 168 kgklsr........llgllqqakeig......................................................gvaglnig.assadnlskl 203
                  + + +        +          +                                                      +   l ++  +  ++++  
  EGE27021.1 158 VASIVEtnsaqakpI----------AdrlraaaahaeatdgqktnveirtnnltmlvgaklganknfqiyggpvaqrvkgE-VHLRGPaYQVMTGYDAK 245
                 222222111222223..........23444444445777888888888888888888888888888888888888887743.34444458899999999 PP

                 EEEEEEEEEEEEE.EEECCTTEEEEEEEE--EEEEEEEEEEECC-CCCCCCCCCCHHHSTT-EEEEEEEEEE-EEEEEEEEEEECTTEEEEEEEEEEEG CS
   Toluene_X 204 kgddlsvGfnlGv.lyeltddtrlGlaYrskvkvklkgkyevsavsgaaglvtavggaalglkakgkltltlPasaelsvvhklndqwalhaslkwtgW 301
                  + d+ +G+ +G+  y+++   + +l+Yrs+++++ +  ++                 ++g  +k + ++tlP+s++l++   +n    l a + ++ W
  EGE27021.1 246 IATDTQLGWAAGLaFYKPEIALKAALTYRSEIEHDSEIAETI---------------PVTGYAGKKDFKVTLPDSWNLDFQTGVNPTTLLTAKVRYVPW 329
                 99**********7359*****************987665555...............235667899********************************* PP

                 GG-SEE......EEEECCCCTEEEEEEE---.EEEEEEEEEEEEESSSSEEEEEEEEEEE-SS-CCC-BSSS--SSEEEEEEEEEEESSSSEEEEEEEE CS
   Toluene_X 302 Ssfkel......taviakskgntslskpenY.rDtwsfalGteYrvndkltLRaGvaYdqsaipdekrdirvPdgdrtllslGltYaitkdltiDvgfs 393
                 S+f+        t   +k    + l +   Y +D ws  +G   rv+d+l++ + v +d  a   + ++ + P++  ++l+lG+ Y++t++ ++  g  
  EGE27021.1 330 SDFDIRptqyteT---TKLRYPQGLPIIS-YdKDQWSAEVGLGKRVSDRLAVSGAVGWDSGA--GNPASSLGPIKGYYSLGLGARYNVTPEWSLSLGGK 422
                 ***9774443221...2222122233333.349*****************************..9999999**************************** PP

                 EEEEEEEEEEE CS
   Toluene_X 394 ylvvkkakiae 404
                 y+ + +a+ + 
  EGE27021.1 423 YFKFGDAQAQL 433
                 *9999888765 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   4.5    0.0013       7.7       4      82 ..      13     118 ..      10     143 .. 0.55
   2 !   19.3   0.2   1.6e-07   0.00098      70     154 ..     187     273 ..     172     317 .. 0.82
   3 !   16.0   1.8   1.7e-06      0.01      41     140 ..     358     456 ..     329     458 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0013
   OMP_b-brl   4 lllaalsaaaaa............assfggfyvggglglskvkv...dgvgsds......gfgfgvgagyefndnvgveggls.......ysgdkdysg 74 
                 ++++ l a+aa+            a  + g y++  +++++++v   d +g+d+       + f  g+  ++nd ++v+  ++       +++++++++
  EGE27021.1  13 AVFSTLTATAAQaagldrsgqdvtAFLQDGTYAETVYTYIDANVtgkDTSGKDTgdiaeaYDFFRYGVKADINDTFSVGVLYDepfgaaiKYDGNSNFV 111
                 444444444444457888888888777777777755555544443232234444667776588888888899998888887774422222133333333 PP

   OMP_b-brl  75 s.gktdiki 82 
                      +++ 
  EGE27021.1 112 AdK--NATA 118
                 222..3333 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.6e-07
   OMP_b-brl  70 kdysgsgktdikinllsvpvnagyafnlsdsvlpyggaGlgytkvevdvsgng.......asdsdtdfglglgaGveyaladnwslkaeYry 154
                 +     +kt+++i+++++++ +g +++ ++++++ygg   +++k ev  +g +       + +  td+ lg++aG+ ++  ++++lka  +y
  EGE27021.1 187 DG----QKTNVEIRTNNLTMLVGAKLGANKNFQIYGGPVAQRVKGEVHLRGPAyqvmtgyDAKIATDTQLGWAAGLAFYK-PEIALKAALTY 273
                 22....567999****************99****************************999999***********96654.44444444444 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.7e-06
   OMP_b-brl  41 dsgfgfgvgagyefndnvgvegglsy.sgdkdysgs.gktdikinllsvpvnagyafnlsds.vlpyg.gaGlgytkvevdvsgngasdsdtdfglglg 135
                 ++ +  +vg+g +++d+++v+g +++ sg+++ ++s g+ +    ++s+++ a+y++   ++ +++ g  + +g +++++ ++++ +++ d++ g+ lg
  EGE27021.1 358 KDQWSAEVGLGKRVSDRLAVSGAVGWdSGAGNPASSlGPIK---GYYSLGLGARYNVTP-EWsLSLGGkYFKFGDAQAQLPTKDK-VGNFDSNDGYALG 451
                 34688888888888888888888888544444444233232...344566666666653.2233333311233333333333333.5777888888888 PP

   OMP_b-brl 136 aGvey 140
                 + + y
  EGE27021.1 452 VKLAY 456
                 77766 PP

>> YadA_anchor  YadA-like membrane anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.1   6.8e+03      11      23 ..     254     266 ..     247     275 .. 0.65
   2 !   10.8   0.3   6.7e-05       0.4      26      49 ..     365     388 ..     358     395 .. 0.85
   3 !    7.3   0.0   0.00082       4.9      19      48 ..     398     427 ..     391     433 .. 0.84
   4 ?    0.4   0.1      0.12   7.3e+02      15      29 ..     439     453 ..     439     458 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.1
  YadA_anchor  11 vgaGvGgYkgqsA 23 
                   +aG+++Yk + A
   EGE27021.1 254 WAAGLAFYKPEIA 266
                  4677777775555 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.7e-05
  YadA_anchor  26 vGasarsngnlvvklgvavssggs 49 
                  vG+++r++++l+v+++v+++sg +
   EGE27021.1 365 VGLGKRVSDRLAVSGAVGWDSGAG 388
                  8******************87754 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.00082
  YadA_anchor  19 kgqsAvAvGasarsngnlvvklgvavssgg 48 
                  kg++++++Ga ++++  + ++lg+ ++  g
   EGE27021.1 398 KGYYSLGLGARYNVTPEWSLSLGGKYFKFG 427
                  89*********************9886555 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.12
  YadA_anchor  15 vGgYkgqsAvAvGas 29 
                  vG+++++ + A+G++
   EGE27021.1 439 VGNFDSNDGYALGVK 453
                  79***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 3682.06
//
Query:       EGE27022.1  [L=353]
Description: ErfK/YbiS/YcfS/YnhG family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-19   69.0   0.1    1.1e-18   68.1   0.1    1.4  1  YkuD          L,D-transpeptidase catalytic domain
    4.4e-08   33.2   0.0    1.7e-07   31.4   0.0    1.9  2  PG_binding_1  Putative peptidoglycan binding domain


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.1   1.2e-22   1.1e-18       3     146 .]     225     352 ..     224     352 .. 0.86

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 1.2e-22
                 EEEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTTCECCCCEEE-STTS-E CS
        YkuD   3 yivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskvalgkvkfvfpngsgiy 101
                 ++v d+++ ++l+ y++++lv ++p++vG    + + TP G+++i +kv+ pt  +  +  r + ++k ++ p + +      +   v ++  n+++++
  EGE27022.1 225 RVVADRKD-KILYAYHEDQLVATYPTTVG---GEASTTPGGKYKIINKVKMPT--YKATVNRDDEDNKVYYLPPGPN------SPVGVVWMGLNKPSYG 311
                 689999**.999*****************...6789*****************..5555555666666666555555......7899************ PP

                 EEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD 102 iHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                 iHg++ p+  +r      S GCirl++ d++el   +++g +v+i
  EGE27022.1 312 IHGSPIPEGISR----QSSLGCIRLTNWDVLELVAVIENGATVEI 352
                 **9999988877....78**********************98887 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.9e-11   1.7e-07      18      57 .]      95     134 ..      82     134 .. 0.88
   2 ?   -1.5   0.0      0.35   3.1e+03      10      19 ..     170     179 ..     163     187 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.9e-11
                   -.SSSSSB--HHHHHHHHHHHHHTTST-SSSBSHHHHHHH CS
  PG_binding_1  18 lsgpadgtfgpateeaVkefQqffgLpvtGildpaTlaal 57 
                   ++gp+dg  g   ++a+  fQ+  gL++tG++++aT++al
    EGE27022.1  95 SPGPIDGGWGMNSKKALMNFQKIKGLEPTGKMNQATWDAL 134
                   489***********************************98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.35
                   HHHHHTT--. CS
  PG_binding_1  10 ryLsrlGyls 19 
                    +L++lGy s
    EGE27022.1 170 SKLKALGYES 179
                   6899999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2508.57
//
Query:       EGE27023.1  [L=307]
Description: ornithine carbamoyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-49  166.5   0.0      7e-49  165.9   0.0    1.3  1  OTCace    Aspartate/ornithine carbamoyltransferase, Asp/Orn b
    8.6e-47  158.9   0.0    1.3e-46  158.3   0.0    1.3  1  OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl


Domain annotation for each model (and alignments):
>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.0   7.8e-53     7e-49       1     156 [.     150     297 ..     150     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 165.9 bits;  conditional E-value: 7.8e-53
                 CC.EEEEESSTTSHHHHHHHHHHHHCT-EEEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTCCGGHHHHHHHHCCC CS
      OTCace   1 kglkiafvGdkknnvanslikllarlgmdvvlvaPkglepdkevleeakknakksggsititedleeavkgaDvvytdvwvsmgeekereerlkklkdy 99 
                 kg+++++vGd+ nn++ s i ++ ++g+++++ aP g+ep+++++ee +       + +t+ ed++ea+kga+ + tdvw+smg+e+e+++r++ +++y
  EGE27023.1 150 KGKTVTWVGDG-NNMCASYILAAHQFGFQLRVTAPYGFEPNPKLIEEYS-------HCVTYVEDPQEAAKGAHLITTDVWASMGQESEQMTRARRFAPY 240
                 79*********.*******************************996655.......569**************************************** PP

                 SB-HHHHHHS-TT-EEEE-S---BTTTB-HHHHTSTTBHHHHHHHHHHHHHHHHHHH CS
      OTCace 100 qvteellklakkdaivlHcLPakrgeEvtdeVfdsprsvvfeqaeNrlhtikAllvl 156
                 qv  ++l++a++d++++HcLPa+rgeE++ +  ++prsvv+++aeNrlh++kAl+ +
  EGE27023.1 241 QVSPAMLDKADPDVLFMHCLPAHRGEEISFDLLNDPRSVVWDEAENRLHAQKALMEF 297
                 *******************************************************76 PP

>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3   0.0   1.4e-50   1.3e-46       1     148 []       4     144 ..       4     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 158.3 bits;  conditional E-value: 1.4e-50
                 S-BSSGGGS-HHHHHHHHHHHHHHHHHHHTTT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHHH CS
    OTCace_N   1 rhllsledlskeeieelldlaaelkekvkkekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvlsr 99 
                 rh+ +l d++++e+e+++++a++l++ ++  +  + + g+tl+++Fe++StRTr+Sfe+++ + Gg++++ls ++d+ql+     r+E++eD a+v+s+
  EGE27023.1   4 RHFRNLLDMTPAELEAIISRASKLRQMQQCGEIYRPFVGRTLGMIFEKSSTRTRISFEAGMGQFGGHAIFLS-PKDTQLG-----RGEPIEDSAKVISS 96 
                 8**************************99999****************************************.88*****.....78************ PP

                 HTSEEEEEESSHHHHHHHHHHHSSEEEEEEETSSB-HHHHHHHHHHHHH CS
    OTCace_N 100 yvdaiviRhpgaeeleelakyasvpviNagdgdgeHPtQaLaDlltire 148
                 +vd+i+iR++++++l+ + k++svpviNa+ +d+ HP+Q LaD++t++e
  EGE27023.1  97 MVDIIMIRTFEHDKLDLFCKHSSVPVINAL-TDDFHPCQLLADMQTFHE 144
                 ******************************.****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2292.83
//
Query:       EGE27024.1  [L=381]
Description: 3-oxoacyl-(acyl carrier protein) synthase III [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-23   82.0   0.1    3.2e-22   78.5   0.0    2.4  2  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    6.3e-17   61.2   0.1    1.1e-16   60.4   0.1    1.4  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    8.3e-06   25.3   0.1    1.3e-05   24.7   0.1    1.3  1  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
      0.041   13.2   0.0      0.061   12.6   0.0    1.2  1  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote
      0.061   12.9   1.4       0.17   11.5   0.1    2.3  3  Peptidase_M57    Dual-action HEIGH metallo-peptidase
       0.11   12.4   0.2       0.28   11.1   0.1    1.8  2  DUF1825          Domain of unknown function (DUF1825)
       0.14   12.1   0.0       0.49   10.4   0.0    1.9  1  Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal 


Domain annotation for each model (and alignments):
>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.29   7.5e+02       1      20 [.     108     127 ..     108     141 .. 0.87
   2 !   78.5   0.0   1.2e-25   3.2e-22       1      89 [.     290     379 ..     290     380 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.29
                    HHHTT--GGG-SEEEE-SSS CS
  ACP_syn_III_C   1 Lekagltpedidalvphqan 20 
                    L++a+lt++d+d +++   n
     EGE27024.1 108 LDRAKLTADDLDGIICASSN 127
                    789***********998887 PP

  == domain 2  score: 78.5 bits;  conditional E-value: 1.2e-25
                    HHHTT--GGG-SEEEE-SSSHHHHHHHHHHH.T--GG..GB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTEEEEEEEE CS
  ACP_syn_III_C   1 Lekagltpedidalvphqanlriidavakkl.glpee..kvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGltwgaallr 89 
                    L +++l++++i+++++hqan+++id +++ + g +++   ++v ++eyGnts+as ++a++e  e   +++ dl+++++fGaG+++g++ll+
     EGE27024.1 290 LTENNLSADQIKRMWLHQANINMIDLILRTVvGKDADksIAPVVIAEYGNTSSASPVVAFHETQE--GVESEDLCVMCSFGAGYSIGSVLLK 379
                    6799**********************7776656665522678899*******************9..8**********************97 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   4.4e-20   1.1e-16       1      78 [.     151     229 ..     151     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 4.4e-20
                  EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TTTHHHHTTB-EEEEEEEEEEE.SSSSCEEEEEEEEE CS
  ACP_syn_III   1 fDlnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilDwkdrstavlfGDGAgAvvleas.eeegarildselgs 78 
                  +D+n aCs++++++++A + i++g  k++ v + e++s +l+w++r+++++fGD A+A+++e+  + +g +ilds+l++
   EGE27024.1 151 YDMNVACSAATFGIAQAVGSIKAGLGKKIAVLNVEITSAHLNWRNRDSHFIFGDVAAATIVEELsTPKGYEILDSKLYT 229
                  7**************************************************************9888999******987 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   5.2e-09   1.3e-05      23     113 ..      96     185 ..      80     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.2e-09
                 HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEE CS
  Thiolase_N  23 aeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvE 113
                 + e++ +alk++l++a+++++++d +i++    +    +ia ++++++g+ ++  a  +n +cs +  ++a+a++si+ag  + + +  vE
  EGE27024.1  96 MAEMGLAALKDALDRAKLTADDLDGIICASSNFQRCYPAIAIEIQHAIGM-QHGFAYDMNVACSAATFGIAQAVGSIKAGLGKKIAVLNVE 185
                 568999**************************999999************.9999************************977666666565 PP

>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.4e-05     0.061      63     179 ..      76     191 ..      26     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
  FAE1_CUT1_RppA  63 vPravlelpekktlaeareEaeevlfgavdellaktkvspkdidilvvncslfs.ptPslsamvvnryklredvksynLsgmGCsAglisidlak 156
                      P+ +  + ++++l e  + + e+  +a+++ l ++k++++d+d ++ ++s f+   P+++  + +  ++++   +y++  + CsA++  i  a 
      EGE27024.1  76 DPKIMAPIFPARKLGEELSVMAEMGLAALKDALDRAKLTADDLDGIICASSNFQrCYPAIAIEIQHAIGMQHGF-AYDMN-VACSAATFGIAQAV 168
                     4777788888889999999999999***************************97357*************9996.67775.58********9999 PP

  FAE1_CUT1_RppA 157 nllqvhkntlalvvstEnitlnw 179
                       +++  ++   v+ +E +++++
      EGE27024.1 169 GSIKAGLGKKIAVLNVEITSAHL 191
                     99999999988899999888765 PP

>> Peptidase_M57  Dual-action HEIGH metallo-peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.56   1.4e+03      53      73 ..      18      38 ..      10      61 .. 0.74
   2 ?   11.5   0.1   6.5e-05      0.17     137     174 ..     135     172 ..     122     184 .. 0.90
   3 ?   -3.5   0.0       2.5   6.4e+03      47      86 ..     289     326 ..     279     348 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.56
  Peptidase_M57 53 stsklrtgLdlaianynalgl 73
                   s+ +l ++ ++ ++nyna   
     EGE27024.1 18 SNDELVAAFNTYVDNYNAEHA 38
                   566778889999999998754 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.5e-05
  Peptidase_M57 137 ithelGhtvGlRhsDyynrsisCGsagnegtagvGaih 174
                    i  e+ h++G+ h   y+ +++C +a+   + +vG i+
     EGE27024.1 135 IAIEIQHAIGMQHGFAYDMNVACSAATFGIAQAVGSIK 172
                    7789**********************999999999986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.5
  Peptidase_M57  47 tgsafsstsklrtgLdlaianynalglsltfrltrgtntq 86 
                      +++++++ + + + l  an n ++l l+     g+  +
     EGE27024.1 289 HLTENNLSADQIKRMWLHQANINMIDLILRTV--VGKDAD 326
                    44455566666666666666777777666543..444443 PP

>> DUF1825  Domain of unknown function (DUF1825)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.1   1.1e+04      65      85 ..      95     115 ..      88     118 .. 0.71
   2 ?   11.1   0.1   0.00011      0.28      33      80 ..     267     314 ..     234     320 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.1
     DUF1825  65 flakmtvkqlktqlgqfgitp 85 
                  +a+m +  lk  l ++ +t 
  EGE27024.1  95 VMAEMGLAALKDALDRAKLTA 115
                 577788888877777776665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00011
     DUF1825  33 fdreGkkifiekleelleryrilmkrlelsddflakmtvkqlktqlgq 80 
                 f +eG+k+f e   ++ e + i +   +ls d + +m ++q ++++ +
  EGE27024.1 267 FLQEGRKVFREVCPKVSEIITIHLTENNLSADQIKRMWLHQANINMID 314
                 889****************************************99975 PP

>> Chal_sti_synt_C  Chalcone and stilbene synthases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00019      0.49      88     150 ..     328     381 .]     273     381 .] 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
  Chal_sti_synt_C  88 easrkvlseyGnvssatvlyvldelrdkelkkklattgegkewGlllafGPGltietlllrsv 150
                       ++  v+ eyGn ssa+ +  ++e ++     ++    e++++ ++ +fG G +i ++ll+ v
       EGE27024.1 328 SIAPVVIAEYGNTSSASPVVAFHETQE-----GV----ESEDLCVMCSFGAGYSIGSVLLKKV 381
                      45567899********98766655444.....44....456******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2744.38
//
Query:       EGE27025.1  [L=35]
Description: hypothetical protein EA1_04245 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.055   12.7   0.1      0.055   12.7   0.1    1.0  1  DUF4704   Domain of unknown function (DUF4704)


Domain annotation for each model (and alignments):
>> DUF4704  Domain of unknown function (DUF4704)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.1e-06     0.055      65      91 ..       2      28 ..       1      33 [. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-06
     DUF4704 65 iaelleasstnqqqlvqtkGflvlafl 91
                + +ll  +s+nq+ +vqtkG+ +++fl
  EGE27025.1  2 LKDLLLRQSSNQKTFVQTKGMAIMSFL 28
                678999999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 273.13
//
Query:       EGE27026.1  [L=317]
Description: RDD family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-18   65.9   8.6    5.5e-18   65.5   8.6    1.1  1  RDD       RDD family
    9.5e-12   44.5   0.0    1.9e-11   43.6   0.0    1.5  1  GYF_2     GYF domain 2


Domain annotation for each model (and alignments):
>> RDD  RDD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   8.6   6.2e-22   5.5e-18       2     141 .]     140     300 ..     139     300 .. 0.92

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 6.2e-22
         RDD   2 aslgrRllAfliDlvllliislllallivall..............nakasaneavagslllllllvlllvllvyqllllskkgqTlGklllglkvvd. 85 
                 a++g+R++A++i +vl+ + ++++ + ++al+              +a+a++  ++  +  + l+ +l+++ l++ql+l++ ++q++Gkl+ g+++vd 
  EGE27026.1 140 ATIGSRFMAVMINFVLFMLALMPFLQQFMALNpdpvllntgdfetrMAYAQELATQIPAQTMTLSSILIAAYLIIQLILIIVRAQSFGKLVAGIRTVDt 238
                 89****************************99******************************************************************9 PP

         RDD  86 edgrklgla.qaliRalllllllv.....lglslvlllllligflfvlfsrkrqalhDklag 141
                 ++ +k+ +  + ++R ++l++++       +   + l+ll+i++++++ s+ +q++hDklag
  EGE27026.1 239 KTLEKPNFFkRFVLRVVVLFFIYQlasalPIAINMALILLMINYIMAARSPIKQGWHDKLAG 300
                 999999998788888887766666**887444445678899*******************97 PP

>> GYF_2  GYF domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   2.2e-15   1.9e-11       2      48 ..       4      50 ..       4      51 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 2.2e-15
       GYF_2  2 yyadngqqqGPfsleeLkelaasgeitpdtlVWreGmddWkpasevp 48
                y+a+n+ q GP++leeL  ++asge++ d+l+W++ m+ W++++++ 
  EGE27026.1  4 YLARNQVQAGPYTLEELNTMLASGEVRLDDLIWHSPMTTWQRLGDLT 50
                8999****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       923  (0.0514808); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2320.49
//
Query:       EGE27027.1  [L=235]
Description: uracil-DNA glycosylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-21   75.0   0.0    8.7e-21   74.5   0.0    1.2  1  UDG       Uracil DNA glycosylase superfamily
  ------ inclusion threshold ------
      0.072   13.1   0.0         11    5.9   0.0    2.1  2  PAC2      PAC2 family


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   9.7e-25   8.7e-21       6     151 ..      65     220 ..      60     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 9.7e-25
                 TT-SEEEEESSTCHH.HHHHSSSS.-STT.--HHHHHHH.CCCCCCCHHG............CTEEEEESSS....S.ECGCTTCCCCTCCHH.HHHHH CS
         UDG   6 pdakvvivGeaPgae.edatglpFsgrag.nllrkllne.aglkrdlese............qgvyitnvvkcrppg.nrdtptsaeikacap.lleee 87 
                  ++kvvi+G++P++  ++a gl Fs+++   ++++l n+  +l++dl  +            qgv+++n+ +    + + +   s++ k++++ ++++ 
  EGE27027.1  65 SQVKVVILGQDPYHGiGQAMGLSFSVPKLiPKPPSLQNIlKELSNDLGVPisrhgdlsfwakQGVLLLNATL----TvEAGLAGSHQ-KQGWEeFTDAV 158
                 689***********************776655555555555666666555667778****************....74446889999.99********* PP

                 HHHHH....SSEEEEESHHHHHH..HHHHSCESCCCSCT..SEEEEES-SSTTTTT...TTTSHHHHHHHHH CS
         UDG  88 iellk....prlivllGktaakallgeklgklrgklleak.irvlplphPsplnrn...ffksnpelkaeaw 151
                 ie+++    +++++l+G +a  +          g+++++  + vl+ +hPspl +n   ff+++p+++++++
  EGE27027.1 159 IEAINnytdQTVFILWGSYAKHK----------GRFIDTSkHLVLTASHPSPLAANrggFFGTRPFSRTNEY 220
                 ********9999***********..........******88***************************9998 PP

>> PAC2  PAC2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0012        11     158     199 ..      79     122 ..      70     127 .. 0.87
   2 ?    5.1   0.0    0.0022        20      75     131 ..     145     200 ..     126     217 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0012
                 T-.EEEEEEEEEECCC--HHHHHHHHHHHHHHHT---HCH.HHH CS
        PAC2 158 gi.pavgllaevphylpdPkaaaalleflskllglevdte.dLe 199
                 gi +a+gl  +vp+ +p P++ + +l+ ls+ lg+ ++   dL+
  EGE27027.1  79 GIgQAMGLSFSVPKLIPKPPSLQNILKELSNDLGVPISRHgDLS 122
                 56689*****************************9988544886 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0022
                 E-HSCHHHHHHHHHHHHHHHTTESEEEEEEEEEESS-ES..TTS-.EEEEEESSHHH CS
        PAC2  75 repilqyeefakalldwaeelgvkevvvLggldageradvphtrpekvtgaatdeel 131
                  ++   +eef++a+++ +  +  ++v++L g  a ++ +  +t +  + ++a++++ 
  EGE27027.1 145 SHQKQGWEEFTDAVIEAINNYTDQTVFILWGSYAKHKGRFIDTSK-HLVLTASHPSP 200
                 67777899*********************9999999876666665.55555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1566.37
//
Query:       EGE27028.1  [L=181]
Description: tRNA-specific adenosine deaminase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-29  102.7   0.0    1.5e-29  102.5   0.0    1.0  1  MafB19-deam      MafB19-like deaminase
    1.2e-25   89.3   0.2    1.6e-25   88.9   0.2    1.1  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
     0.0011   19.1   0.1     0.0017   18.4   0.1    1.4  1  Bd3614-deam      Bd3614-like deaminase
  ------ inclusion threshold ------
      0.039   13.8   0.4      0.073   12.9   0.4    1.6  1  Inv-AAD          Invertebrate-AID/APOBEC-deaminase
      0.063   13.4   0.1       0.11   12.6   0.1    1.3  1  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
       0.12   12.4   0.0       0.21   11.7   0.0    1.4  1  APOBEC3          APOBEC3


Domain annotation for each model (and alignments):
>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   5.1e-33   1.5e-29       4     138 .]      26     171 ..      23     171 .. 0.93

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 5.1e-33
  MafB19-deam   4 ekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskr.lddatlyvtlepCdmCagaivqaglkklvyg 100
                   ++++ al+ +++++k +e ++gav+v ++++++ g+n   + +++taHaEi a+++A++ l + r +++++lyvtlepC mC ga++ a++ ++v+g
   EGE27028.1  26 VEMMNRALEIAKQGAKFGEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAVRRACETLNNYRlPKGCILYVTLEPCTMCFGALIHARISHVVFG 123
                  678999********************************9999*******************998872599**************************** PP

  MafB19-deam 101 agnpks...lnkLkvkek...ngrvelv....eddckeilkgffkklr 138
                  a +pk+   +++Lk+ e+   n+r  +      d+ +++l+gff++ r
   EGE27028.1 124 AFEPKAgvvISQLKLPEQafyNHRLSVYggllADKSSALLSGFFRQRR 171
                  *********999998775444999999899999************986 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.2   5.4e-29   1.6e-25       4     100 ..      25     123 ..      23     124 .. 0.94

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 5.4e-29
                      HHHHHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCE.TTEEEEEEE--BHHHHHHHHHHT-S CS
  dCMP_cyt_deam_1   4 dekllelalkaakeaqkcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.ggskl.egatlyvtlePCsmCakaiiqsgik 95 
                      d ++++ al+ ak+  k  +++VGav+v +g+i+++gyn   + +++t+HAE++A++ a+++ ++++l +g++lyvtlePC+mC  a+i+++i+
       EGE27028.1  25 DVEMMNRALEIAKQGAKFGEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAVRRACETlNNYRLpKGCILYVTLEPCTMCFGALIHARIS 118
                      6689***********9*********************************************9776666799*********************** PP

                      EEEEE CS
  dCMP_cyt_deam_1  96 kvvvg 100
                       vv+g
       EGE27028.1 119 HVVFG 123
                      ***97 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   5.6e-07    0.0017      70      97 ..      88     115 ..      67     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.6e-07
  Bd3614-deam  70 errpleegarllvtlqcCkmCAalvvaa 97 
                  ++  l++g  l+vtl++C mC + +++a
   EGE27028.1  88 NNYRLPKGCILYVTLEPCTMCFGALIHA 115
                  45679****************9888776 PP

>> Inv-AAD  Invertebrate-AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   2.5e-05     0.073       9      65 ..      54     107 ..      48     133 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
     Inv-AAD   9 kneilatGytlel...eGnthaeqccliklaekhevaeeklaevlpkntvlYttmepCsk 65 
                 +++il +Gy   +   + + hae  ++ +  e+ +      +  lpk ++lY t+epC+ 
  EGE27028.1  54 EGRILGEGYNCPIttqDPTAHAEIVAVRRACETLN------NYRLPKGCILYVTLEPCTM 107
                 57788888887775545567777766666554433......3459*************85 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.8e-05      0.11      19      61 ..      70     113 ..      59     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.8e-05
       SNAD4  19 nkkehaEllflekikseldpsqe.yrvtwylswsPCaeCaekia 61 
                 + + haE++  ++ +++l++ +     ++y++  PC+ C  +++
  EGE27028.1  70 DPTAHAEIVAVRRACETLNNYRLpKGCILYVTLEPCTMCFGALI 113
                 3445**********99887554437799***********98876 PP

>> APOBEC3  APOBEC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.2e-05      0.21      28      71 ..      70     113 ..      49     121 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.2e-05
     APOBEC3  28 kekkHAEerfidkirslnldslkqykitcylswsPcpkCaeelv 71 
                   + HAE++++++  ++  +   +   ++y++  Pc  C   l+
  EGE27028.1  70 DPTAHAEIVAVRRACETLNNYRLPKGCILYVTLEPCTMCFGALI 113
                 4678********9988444445567799***********88777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1388.55
//
Query:       EGE27029.1  [L=237]
Description: cytidylate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-63  214.2   0.1    1.9e-63  214.0   0.1    1.0  1  Cytidylate_kin   Cytidylate kinase
    4.6e-06   26.9   0.0    1.2e-05   25.5   0.0    1.7  1  Cytidylate_kin2  Cytidylate kinase-like family
    7.9e-06   26.4   0.0    8.4e-05   23.1   0.0    2.2  1  AAA_18           AAA domain
    4.6e-05   23.9   0.1    0.00031   21.2   0.1    2.2  1  AAA_17           AAA domain
     0.0003   21.0   0.2     0.0017   18.5   0.2    2.0  1  AAA_33           AAA domain
     0.0021   18.2   0.0      0.005   17.0   0.0    1.6  2  ADK              Adenylate kinase
  ------ inclusion threshold ------
      0.027   14.3   0.0      0.098   12.5   0.0    1.8  2  dNK              Deoxynucleoside kinase
       0.07   12.9   0.0       0.18   11.5   0.0    1.7  2  PRK              Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.0   0.1   8.5e-67   1.9e-63       1     210 [.      14     232 ..      14     233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 214.0 bits;  conditional E-value: 8.5e-67
                     EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHHHHHHHTT-..-TT-HHHHHHHHHT--EEEEEE......EEEETTEE-TTGGGSHHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaeklglkyldtgalYRalalaalrrkv..dlldeaalvelakevelsfeae......kvllngedveeelrsdevek 87 
                     i+iDGP+g+GK+++a +lae++g+++ld+galYR++ l+a ++    ++ de al +l+++++lsf  +       ++++++ + +++r++ v  
      EGE27029.1  14 ITIDGPSGAGKGTLAYRLAEHFGFELLDSGALYRIVGLMAYQAGLldNTPDELALSDLVQSLHLSFCPNaktraiDIYVDKKLLRDDIRNETVGG 108
                     89***************************************99764356688899999999999998877888889******************* PP

                     HHHHHTTSHHHHHHHHHHHHTT-B.SSBEEEEESSIIIIISTT-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS- CS
  Cytidylate_kin  88 avSavaaipavRailvkklrelvk.karvvveGRDigtvvfpdaelKifldAsveeRakRRlkqlkakgtsvsleellaeikeRDklDkerevgp 181
                      +S vaa+p+vR++l++++r++++ k ++v++GRD+gtv+fp+a+ Ki+l+As+++RakRR++ql+++g++ +++++la+i++RD++D++r+v+p
      EGE27029.1 109 YASIVAAFPKVRSALLDLQRNIADnKLGLVADGRDMGTVIFPHAHAKIYLTASAQARAKRRVTQLTQAGKQANFDDILADIIARDERDENRSVAP 203
                     ***********************97779******************************************************************* PP

                     S---TT-EEEETTTS-HHHHHHHHHHHHH CS
  Cytidylate_kin 182 Lklaedaliidtskltieevvekilelik 210
                      ++a+dal+id+s+++++ v e++++ i+
      EGE27029.1 204 SRPADDALLIDSSDKSADLVFEEAMQFIE 232
                     ************************99886 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.3e-09   1.2e-05       1     132 [.      13     170 ..      13     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.3e-09
  Cytidylate_kin2   1 iITIsreyGsgGetigeaLAekLglpfydreiieevakelglseeeveevdersrlssflskllaarvagdtl..................... 73 
                      iITI++  G+g+ t++ +LAe++g++++d   + +++  +  +   + +  ++ +ls+++++l     ++ ++                     
       EGE27029.1  13 IITIDGPSGAGKGTLAYRLAEHFGFELLDSGALYRIVGLMAYQAGLLDNTPDELALSDLVQSLHLSFCPNAKTraidiyvdkkllrddirnetv 106
                      8*****************************999999999999999996666668888888888888777777788999***99**999999999 PP

  Cytidylate_kin2  74 ..dekldde...lfeaqervirela.aeesvVivGRgadliLkdrpnvlrvfltapledrvkrva 132
                        ++++  +   ++ a  ++ r++a ++ + V  GR    +   +  + +++lta+ + r+kr  
       EGE27029.1 107 ggYASIVAAfpkVRSALLDLQRNIAdNKLGLVADGRDMGTVIFPHA-HAKIYLTASAQARAKRRV 170
                      9955555442334555567777778756699*****8666666666.89***********98843 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.7e-08   8.4e-05       1     123 [.      14     182 ..      14     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.7e-08
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...........................gvnlrdvakenglllevdpealdeskrldedkldklldaleenss... 69 
                 I + G++G+GK tla +L+++ gf                              l+d+++  +l+++ +++    ++ +d+ +++kll+   +n     
  EGE27029.1  14 ITIDGPSGAGKGTLAYRLAEHFGFelldsgalyrivglmayqaglldntpdELALSDLVQSLHLSFCPNAK----TRAIDIYVDKKLLRDDIRNETvgg 108
                 7899*****************999********999999999999999999988888888888888888888....777777777777777666654333 PP

      AAA_18  70 ..aleegknlvidghlaeleseaakdikk.........................vvLtaspeelleRlekRgyeeakiken 123
                   +       ++  ++       + +++                          ++Ltas + +++R  ++ ++  k+++ 
  EGE27029.1 109 yaS-------IVAAFPKVRSALLDLQRNIadnklglvadgrdmgtvifphahakIYLTASAQARAKRRVTQLTQAGKQANF 182
                 330.......44444443333333333323344555555555555666666666*************99999999988744 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.4e-07   0.00031       2      31 ..      18      47 ..      18     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.4e-07
                E-TTSSHHHHHHHHHHHHTEEEEEHHHHHH CS
      AAA_17  2 GgPGsGKgtqceklvekygfthlsaGdllr 31
                G+ G+GKgt++ +l+e++gf+ l  G l r
  EGE27029.1 18 GPSGAGKGTLAYRLAEHFGFELLDSGALYR 47
                899***********************9977 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   7.7e-07    0.0017       4      35 ..      16      47 ..      13     219 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.7e-07
      AAA_33  4 lvGlpGsGKstlaerllkklgavllssdtlrr 35
                + G++G+GK tla rl+++ g++ll+s +l+r
  EGE27029.1 16 IDGPSGAGKGTLAYRLAEHFGFELLDSGALYR 47
                56*************************99655 PP

>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.2e-06     0.005       3      32 ..      18      47 ..      16      63 .. 0.91
   2 ?   -3.2   0.0       3.5   7.9e+03      30      41 ..      96     107 ..      85     131 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.2e-06
                ESTTSSHHHHHHHHHHHHTSEEEEHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  3 GaPgaGKGtqaeklvkkyglahlstGdllR 32
                G+ gaGKGt a +l++++g+  l +G l R
  EGE27029.1 18 GPSGAGKGTLAYRLAEHFGFELLDSGALYR 47
                999************************999 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.5
                 HHHHHHHCT-HH CS
                 xxxxxxxxxxxx RF
         ADK  30 llRaevksgtel 41 
                 llR++++++t  
  EGE27029.1  96 LLRDDIRNETVG 107
                 455555555443 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.4e-05     0.098       1      27 [.      14      40 ..      14      45 .. 0.93
   2 ?   -1.2   0.0      0.68   1.5e+03     117     139 ..     146     168 ..     124     193 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.4e-05
                EEEEESTTSSHHHHHHHHHCCSTCEEE CS
         dNK  1 ivveGnIgaGKstlvklLskklgvkvf 27
                i+++G+ gaGK tl+ +L++++g++ +
  EGE27029.1 14 ITIDGPSGAGKGTLAYRLAEHFGFELL 40
                89*********************9875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.68
                 HHHCCH-SEEEEEE--HHHHHHH CS
         dNK 117 leelakpdlliYLkasletcler 139
                 +  +++ +  iYL as +   +r
  EGE27029.1 146 TVIFPHAHAKIYLTASAQARAKR 168
                 55677889999999998764443 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     8e-05      0.18       1      29 [.      13      41 ..      13      61 .. 0.87
   2 ?   -2.8   0.0         2   4.4e+03      51      67 ..     163     179 ..     145     199 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8e-05
         PRK  1 vIgvagsSGaGkttvarklekifgrekvk 29
                +I + g+SGaGk t+a +l + fg e + 
  EGE27029.1 13 IITIDGPSGAGKGTLAYRLAEHFGFELLD 41
                89*********************977665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2
         PRK  51 eerkrakekevsflspe 67 
                 + r+++   +++  + +
  EGE27029.1 163 QARAKRRVTQLTQAGKQ 179
                 22333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1692.45
//
Query:       EGE27030.1  [L=557]
Description: 30S ribosomal protein S1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-98  322.9  37.8    4.1e-21   75.1   0.2    6.1  6  S1             S1 RNA binding domain
    3.9e-07   30.8  11.2        1.2    9.9   0.8    6.4  7  PCB_OB         Penicillin-binding protein OB-like domain
    0.00018   21.5   9.1        2.1    8.5   0.1    6.9  6  S1_2           S1 domain
     0.0035   17.3   9.0        3.1    7.8   0.2    5.3  5  CsrA           Global regulator protein family
  ------ inclusion threshold ------
      0.022   14.7   5.4        2.7    8.0   0.0    4.7  5  DUF1344        Protein of unknown function (DUF1344)
      0.036   13.9  11.3        1.6    8.7   0.3    5.3  5  BPL_C          Biotin protein ligase C terminal domain
      0.046   13.7  11.7        4.5    7.3   1.5    5.4  5  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   1.5   1.2e-08     3e-05       3      74 ..      20      87 ..      18      88 .. 0.94
   2 !   53.4   2.6   9.7e-18   2.5e-14       2      75 .]     103     172 ..     102     172 .. 0.96
   3 !   75.1   0.2   1.6e-24   4.1e-21       1      75 []     189     261 ..     189     261 .. 0.97
   4 !   67.3   0.5   4.4e-22   1.1e-18       3      75 .]     276     348 ..     274     348 .. 0.97
   5 !   68.8   0.1   1.4e-22   3.7e-19       2      75 .]     362     435 ..     361     435 .. 0.98
   6 !   56.0   3.3   1.5e-18   3.8e-15       5      75 .]     452     521 ..     450     521 .. 0.98

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.2e-08
                TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEE CS
          S1  3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsi 74
                e g v++G+V+ ++ + + V+ g + eg v ++e  ++     ++ ++ vGd ++v+v+ vd+  +  +ls+
  EGE27030.1 20 ERGSVISGTVVAIDSDWITVDTGLKSEGIVAREEFLNE----AGELEVAVGDSIDVVVEAVDNGMGQTVLSR 87
                6799********************************98....7********************999988886 PP

  == domain 2  score: 53.4 bits;  conditional E-value: 9.7e-18
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +e +e+v+G+++s +kgG+ Ve+g  v++f+p s+++ +   ++++++  +G+e+++kv+k+dk+r++i++s++
  EGE27030.1 103 HENDEIVKGVISSKVKGGFTVEIG-SVRAFLPGSLVDVR---PVRETTHLEGKELEFKVIKIDKQRNNIVVSRR 172
                 7889********************.************77...*****************************986 PP

  == domain 3  score: 75.1 bits;  conditional E-value: 1.6e-24
                 HSTTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   1 kpekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 k+e+g +veG+V+++t++GafV+lg g++g++++ +++++ r+++p+e + vG+ +kvkvlk+d++r+r++l +k
  EGE27030.1 189 KLEEGMEVEGIVKNLTDYGAFVDLG-GIDGLLHITDMAWK-RIKHPSEAVEVGQDLKVKVLKFDRERNRVSLGLK 261
                 6799*********************.**************.******************************9875 PP

  == domain 4  score: 67.3 bits;  conditional E-value: 4.4e-22
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                  +g++ ++ Vt++t++G f e+ +g+eg+v++se+++ +++ +p++v++vGdev v vl++d +rrri+l ik
  EGE27030.1 276 PVGTITKARVTNLTDYGCFAEIAEGIEGLVHVSEMDHTNKNIHPSKVVQVGDEVNVMVLEIDGERRRISLGIK 348
                 589*******************************************************************997 PP

  == domain 5  score: 68.8 bits;  conditional E-value: 1.4e-22
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +ekg+ ++G+++s+t++G+f+ l++g++g+v++s++s+  ++e+  + +++Gd+v+++vl vd +++ri+l ik
  EGE27030.1 362 HEKGQKISGTIKSITDFGLFIGLEGGIDGLVHLSDISWTESGEEAIRNYSKGDTVEAVVLSVDAEANRISLGIK 435
                 89*********************************************************************997 PP

  == domain 6  score: 56.0 bits;  conditional E-value: 1.5e-18
                 TCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   5 gevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 g++v+G+V++v+ +Ga + l  +veg++ +++++r+ r+ed ++vl+vGdev++k+ +vd++ r+i+lsik
  EGE27030.1 452 GAIVKGTVKEVDAKGAVITLADEVEGYLRVADIARE-RTEDASKVLSVGDEVEAKIVGVDRKSRNISLSIK 521
                 99**********************************.********************************97 PP

>> PCB_OB  Penicillin-binding protein OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.5   1.4e+04      32      59 ..      22      49 ..      10      54 .. 0.68
   2 !    5.7   0.0    0.0094        24      11      62 ..      86     135 ..      79     155 .. 0.79
   3 ?    4.3   0.0     0.027        68      17      69 ..     179     229 ..     164     246 .. 0.75
   4 !    6.0   0.0    0.0076        19      27      99 ..     273     335 ..     257     356 .. 0.82
   5 ?    1.0   0.0      0.28   7.1e+02      29      69 ..     362     402 ..     350     411 .. 0.83
   6 ?    4.6   0.1     0.021        54      28      51 ..     410     432 ..     398     440 .. 0.76
   7 !    9.9   0.8   0.00046       1.2      30      94 ..     450     503 ..     435     519 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.5
                TTEEEEEEEEEETTEEEEEETTS-EEEE CS
      PCB_OB 32 gelrpAvVlsvseksarvglrdgetgti 59
                g++  + V++++ + ++v +  +++g +
  EGE27030.1 22 GSVISGTVVAIDSDWITVDTGLKSEGIV 49
                5566777888888877777766666665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0094
                 -SHCT..HHHHHHHCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGG CS
      PCB_OB  11 ealaeadeealeealkklpdsgelrpAvVlsvseksarvglrdgetgtiple 62 
                 + +++++ee++ +al++l++++e++++v+ s  + +++v++ +  ++++p +
  EGE27030.1  86 SREKAKREESW-RALEQLHENDEIVKGVISSKVKGGFTVEI-GSVRAFLPGS 135
                 45566788999.5********************99999999.7777777766 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.027
                 .HHHHHHHCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGC CS
      PCB_OB  17 deealeealkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwark 69 
                 + ++ +e l +  ++g+ ++++V + ++ +a v l +g  g + + +++w r 
  EGE27030.1 179 NSAERDELL-AKLEEGMEVEGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRI 229
                 334444444.4456778889***************.**************886 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0076
                 TSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEEEEEE-T CS
      PCB_OB  27 klpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvvlvrkee 99 
                 ++  +g + +A V++ ++ +  +++++g +g + +++++  +k +           +s+v+++Gd v v+  e
  EGE27030.1 273 QTYPVGTITKARVTNLTDYGCFAEIAEGIEGLVHVSEMDHTNKNI----------HPSKVVQVGDEVNVMVLE 335
                 4445789999********************************954..........689999999999887665 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.28
                 STCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGC CS
      PCB_OB  29 pdsgelrpAvVlsvseksarvglrdgetgtipleglkwark 69 
                 ++ g+   + + s+++ ++ +gl++g  g + l++++w + 
  EGE27030.1 362 HEKGQKISGTIKSITDFGLFIGLEGGIDGLVHLSDISWTES 402
                 5566667788899999999*******************876 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.021
                 SSTCTTEEEEEEEEEETTEEEEEE CS
      PCB_OB  28 lpdsgelrpAvVlsvseksarvgl 51 
                 + + g+ ++AvVlsv++++ r+ l
  EGE27030.1 410 Y-SKGDTVEAVVLSVDAEANRISL 432
                 3.468999*********9988876 PP

  == domain 7  score: 9.9 bits;  conditional E-value: 0.00046
                 TCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEEE CS
      PCB_OB  30 dsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvvl 94 
                 d g ++++ V +v++k+a + l+d+ +g + +++++  r+           ++as+vl++Gd v 
  EGE27030.1 450 DRGAIVKGTVKEVDAKGAVITLADEVEGYLRVADIARERT-----------EDASKVLSVGDEVE 503
                 778999**************************99988777...........78999**9999775 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.52   1.3e+03      36      46 ..      61      71 ..      55      73 .. 0.83
   2 ?   -0.2   0.0      0.42   1.1e+03       4      35 ..     108     138 ..     107     150 .. 0.85
   3 ?    3.1   0.0     0.038        98       7      35 ..     198     225 ..     193     246 .. 0.75
   4 !    8.5   0.1   0.00083       2.1       1      37 [.     277     313 ..     277     343 .. 0.80
   5 !    5.8   0.0    0.0054        14       2      32 ..     365     395 ..     364     404 .. 0.82
   6 ?    1.7   0.1      0.11   2.7e+02       2      29 ..     452     479 ..     452     504 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.52
        S1_2 36 eeleiGdeveV 46
                 e+++Gd+++V
  EGE27030.1 61 LEVAVGDSIDV 71
                5899******9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.42
        S1_2   4 intlkvlretdfgyfLqkdesgevlLpkkevp 35 
                 i++  +  + + g+ ++ +  +  +Lp + v+
  EGE27030.1 108 IVKGVISSKVKGGFTVEIGS-VRAFLPGSLVD 138
                 778899999*********99.9****988765 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.038
        S1_2   7 lkvlretdfgyfLqkdesgevlLpkkevp 35 
                   v+  td g+f++ ++  + lL+  ++ 
  EGE27030.1 198 GIVKNLTDYGAFVDLGG-IDGLLHITDMA 225
                 5688999*******999.99999987664 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.00083
        S1_2   1 iGkintlkvlretdfgyfLqkdesgevlLpkkevpee 37 
                 +G+i +++v+  td g f +  e+ e l++ +e++++
  EGE27030.1 277 VGTITKARVTNLTDYGCFAEIAEGIEGLVHVSEMDHT 313
                 69******************9999******9998744 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0054
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpkk 32 
                 G+  + +++ +tdfg+f+  +++ + l++ +
  EGE27030.1 365 GQKISGTIKSITDFGLFIGLEGGIDGLVHLS 395
                 888999************9887777776655 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.11
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlL 29 
                 G i++ +v++ + +g++++  +++e  L
  EGE27030.1 452 GAIVKGTVKEVDAKGAVITLADEVEGYL 479
                 7899999***999999999555466555 PP

>> CsrA  Global regulator protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       1.4   3.5e+03      13      27 ..      64      78 ..      62      80 .. 0.80
   2 !    5.2   0.0    0.0081        21       8      33 ..     232     259 ..     230     261 .. 0.78
   3 !    7.8   0.2    0.0012       3.1      12      34 ..     323     347 ..     318     349 .. 0.82
   4 ?    1.5   0.0      0.11   2.9e+02      15      34 ..     413     434 ..     404     436 .. 0.76
   5 ?    3.3   0.1     0.031        79      13      38 ..     497     524 ..     491     527 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
                EETTTEEEEEEEEET CS
        CsrA 13 vIgddIeitvleveg 27
                 +gd I ++v +v++
  EGE27030.1 64 AVGDSIDVVVEAVDN 78
                689*****9988876 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0081
                 TT-EEEETTTEEEEEEEEETTE..EEEE CS
        CsrA   8 kgEsIvIgddIeitvlevegnq..vrlg 33 
                 + E++ +g+d +++vl+ + ++  v lg
  EGE27030.1 232 PSEAVEVGQDLKVKVLKFDRERnrVSLG 259
                 67999************98554237777 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0012
                 EEETTTEEEEEEEEETTE..EEEEE CS
        CsrA  12 IvIgddIeitvlevegnq..vrlgI 34 
                 + +gd++ + vle++g++  + lgI
  EGE27030.1 323 VQVGDEVNVMVLEIDGERrrISLGI 347
                 578*************994555666 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.11
                 TTTEEEEEEEEE..TTEEEEEE CS
        CsrA  15 gddIeitvleve..gnqvrlgI 34 
                 gd +e +vl+v+  +n++ lgI
  EGE27030.1 413 GDTVEAVVLSVDaeANRISLGI 434
                 7899999999983355688888 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.031
                 EETTTEEEEEEEEETTE..EEEEEE--T CS
        CsrA  13 vIgddIeitvlevegnq..vrlgIeAPk 38 
                  +gd++e ++++v+ ++  + l I+A +
  EGE27030.1 497 SVGDEVEAKIVGVDRKSrnISLSIKAKD 524
                 689**********977666999999965 PP

>> DUF1344  Protein of unknown function (DUF1344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       4.1     1e+04      38      54 ..     324     340 ..     323     343 .. 0.77
   2 ?   -2.1   0.1       1.5   3.7e+03       4      21 ..     368     385 ..     366     388 .. 0.76
   3 ?    0.4   0.0      0.24   6.2e+02       3      20 ..     415     432 ..     413     433 .. 0.90
   4 ?    8.0   0.0    0.0011       2.7       4      22 ..     455     473 ..     452     478 .. 0.93
   5 ?    4.6   0.0     0.012        30       2      21 ..     500     519 ..     499     519 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.1
     DUF1344  38 kvGvkVvVfYtvvdgkr 54 
                 +vG +V V+  + dg+r
  EGE27030.1 324 QVGDEVNVMVLEIDGER 340
                 78888888877777776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.5
     DUF1344   4 vegtIkkidkkalsitLd 21 
                 + gtIk+i   +l i L+
  EGE27030.1 368 ISGTIKSITDFGLFIGLE 385
                 7899**998877777776 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.24
     DUF1344   3 dvegtIkkidkkalsitL 20 
                  ve+++ ++d++a  i+L
  EGE27030.1 415 TVEAVVLSVDAEANRISL 432
                 699**********99998 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0011
     DUF1344   4 vegtIkkidkkalsitLdD 22 
                 v+gt+k++d+k++ itL D
  EGE27030.1 455 VKGTVKEVDAKGAVITLAD 473
                 79***************98 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.012
     DUF1344   2 advegtIkkidkkalsitLd 21 
                 ++ve++I  +d k+  i+L+
  EGE27030.1 500 DEVEAKIVGVDRKSRNISLS 519
                 68****************96 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.061   1.6e+02       7      25 ..      18      35 ..      13      35 .. 0.80
   2 ?    4.0   0.0     0.018        46      11      28 ..     192     209 ..     188     210 .. 0.84
   3 ?    8.7   0.3   0.00064       1.6      11      30 ..     364     383 ..     362     395 .. 0.85
   4 ?   -0.7   0.1      0.53   1.3e+03      11      29 ..     451     469 ..     449     476 .. 0.84
   5 ?    1.5   0.0      0.11   2.9e+02      12      23 ..     499     510 ..     494     512 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.061
                EEEETSCEEEEEEEEE-TT CS
       BPL_C  7 tlededgkveGiavGIddd 25
                ++e+ + ++ G++v Id+d
  EGE27030.1 18 NIER-GSVISGTVVAIDSD 35
                6777.8899*******976 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.018
                 TSCEEEEEEEEE-TTSEE CS
       BPL_C  11 edgkveGiavGIdddGaL 28 
                 e+ +veGi++ ++d+Ga 
  EGE27030.1 192 EGMEVEGIVKNLTDYGAF 209
                 4889************96 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00064
                 TSCEEEEEEEEE-TTSEEEE CS
       BPL_C  11 edgkveGiavGIdddGaLll 30 
                 +++k+ G+++ I+d+G+ + 
  EGE27030.1 364 KGQKISGTIKSITDFGLFIG 383
                 499**************997 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.53
                 TSCEEEEEEEEE-TTSEEE CS
       BPL_C  11 edgkveGiavGIdddGaLl 29 
                 ++ +v G+++ +d+ Ga +
  EGE27030.1 451 RGAIVKGTVKEVDAKGAVI 469
                 577899**********987 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.11
                 SCEEEEEEEEE- CS
       BPL_C  12 dgkveGiavGId 23 
                 +++ve+++vG+d
  EGE27030.1 499 GDEVEAKIVGVD 510
                 899*******99 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.17   4.3e+02      33      50 ..      62      79 ..      56      87 .. 0.80
   2 ?    2.3   0.0     0.065   1.7e+02      32      56 ..     234     258 ..     217     260 .. 0.87
   3 ?    2.9   0.0      0.04     1e+02      35      56 ..     324     345 ..     317     347 .. 0.89
   4 ?    1.6   0.0      0.11   2.8e+02      37      54 ..     413     430 ..     407     434 .. 0.63
   5 ?    7.3   1.5    0.0018       4.5       5      56 ..     467     518 ..     455     520 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.17
  RNase_II_C_S1 33 glplGervrVrLveADva 50
                   ++++G+ + V ++++D  
     EGE27030.1 62 EVAVGDSIDVVVEAVDNG 79
                   6789***********965 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.065
  RNase_II_C_S1  32 aglplGervrVrLveADvatrrvrF 56 
                    +++++G+++ V++ + D ++ rv +
     EGE27030.1 234 EAVEVGQDLKVKVLKFDRERNRVSL 258
                    5789*************99999975 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.04
  RNase_II_C_S1  35 plGervrVrLveADvatrrvrF 56 
                     +G++v V + e D ++rr+ +
     EGE27030.1 324 QVGDEVNVMVLEIDGERRRISL 345
                    68*****************975 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.11
  RNase_II_C_S1  37 GervrVrLveADvatrrv 54 
                    G++v+  + ++D ++ r+
     EGE27030.1 413 GDTVEAVVLSVDAEANRI 430
                    555666666666555555 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0018
  RNase_II_C_S1   5 AvVvdvddrggtVqladPaVeArveggaglplGervrVrLveADvatrrvrF 56 
                    Av++ +d+ +g +++ad a e + ++++ l +G++v+ ++v +D  +r + +
     EGE27030.1 467 AVITLADEVEGYLRVADIARERTEDASKVLSVGDEVEAKIVGVDRKSRNISL 518
                    77777888889999999999988899999***************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3921.68
//
Query:       EGE27031.1  [L=99]
Description: integration host factor subunit beta [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-23   80.4   0.0    9.1e-23   80.3   0.0    1.0  1  Bac_DNA_binding  Bacterial DNA-binding protein
  ------ inclusion threshold ------
      0.038   14.1   0.0      0.043   13.9   0.0    1.1  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.0     1e-26   9.1e-23       2      90 .]       6      95 ..       5      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 1e-26
                     EHHHHHHHHHTT--.--HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH. CS
  Bac_DNA_binding  2 tkkeLieeiaektg.ltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeavn 90
                     +k+ Li+++a   + l++  + ++v  ++  + ++L  ++++e++gFG+f +++r+ar++rnp+Tge v ++a+ +++Fkp+k+l+e vn
       EGE27031.1  6 NKSNLIANLASVCEeLEEDVVDEAVRLMIAMMVNELVYDGRIEVRGFGSFCLHHRSARIARNPRTGESVSVKAKATPYFKPGKALRESVN 95
                     9*********77766************************************************************************997 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.8e-06     0.043      46     119 ..      20      95 ..       3      98 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.8e-06
      HU-HIG  46 tlsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkki.nfrpgkklkkelk 119
                  l +  v+ ++  ++ +++++L    r+e+ ++G+F l  +s + + ++ + ++ s+k k    f+pgk+l++ ++
  EGE27031.1  20 ELEEDVVDEAVRLMIAMMVNELVYDGRIEVRGFGSFCLHHRSaRIARNPRTGESVSVKAKATpYFKPGKALRESVN 95 
                 567778899999******************************777777999999999987653799****999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 787.40
//
Query:       EGE27032.1  [L=133]
Description: hypothetical protein EA1_04280 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-14   52.3   6.9    3.6e-14   52.3   6.9    2.8  3  LapA_dom         Lipopolysaccharide assembly protein A domain
     0.0002   20.4   1.9    0.00023   20.2   1.9    1.0  1  LMBR1            LMBR1-like membrane protein
     0.0043   17.2   2.7     0.0055   16.8   2.7    1.1  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
  ------ inclusion threshold ------
      0.013   15.0   0.6      0.018   14.6   0.6    1.1  1  DUF2381          Protein of unknown function (DUF2381)
      0.019   14.9   3.5      0.023   14.6   3.5    1.1  1  DctQ             Tripartite ATP-independent periplasmic trans
      0.037   13.9   0.1      0.045   13.6   0.1    1.1  1  Pam17            Mitochondrial import protein Pam17
      0.042   14.0   1.7      0.042   14.0   1.7    2.1  2  ATPase_gene1     Putative F0F1-ATPase subunit Ca2+/Mg2+ trans
       0.38   10.3   8.7       0.46   10.1   8.7    1.1  1  SUR7             SUR7/PalI family
          1    9.3   5.1       0.29   11.1   0.1    2.0  2  DUF4446          Protein of unknown function (DUF4446)
        2.1    7.0   4.8        2.5    6.8   4.8    1.2  1  DUF2207          Predicted membrane protein (DUF2207)
        5.1    6.4   6.8         11    5.2   6.8    1.7  1  DUF4191          Domain of unknown function (DUF4191)
        7.7    7.0   6.8         11    6.5   0.1    2.4  2  FeoB_associated  FeoB-associated Cys-rich membrane protein
        9.2    6.4   5.7         12    6.0   5.7    1.1  1  DHHC             DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   3.7       1.1   1.5e+03      19      35 ..       5      21 ..       1      22 [. 0.73
   2 !   52.3   6.9   2.6e-17   3.6e-14       2      63 ..      23      87 ..      22      88 .. 0.95
   3 ?   -0.1   0.4      0.61   8.5e+02      47      61 ..      92     106 ..      89     109 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.1
    LapA_dom 19 LsllllvafgiGallgw 35
                L++ll++af+  + l++
  EGE27032.1  5 LIILLVLAFAYSLALVV 21
                78888888888777766 PP

  == domain 2  score: 52.3 bits;  conditional E-value: 2.6e-17
    LapA_dom  2 NtqpVtvnflfaqv.elpLsllllvafgiGallgwllsl..wsylrlrrelrrlkkkikklekel 63
                N+q++ vn+lf++v +++L+l+l++++++G+l+g+ll+l  ++++++++e++rlkk+ +  +++l
  EGE27032.1 23 NNQAIAVNLLFSSVaNMSLGLVLVATIFLGILIGILLALllFRVFQNKWEISRLKKEKASIQAKL 87
                *************99************************8779**************99999876 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.61
    LapA_dom  47 relrrlkkkikklek 61 
                 ++l ++ ++i++le 
  EGE27032.1  92 LQLAQQAEEIRRLEL 106
                 677888888888875 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   1.9   1.6e-07   0.00023     130     243 ..       5     115 ..       1     129 [. 0.71

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.6e-07
       LMBR1 130 yllllvivlglliyvliilqklsllsiksllpilislantwGlvll.illlGy..GlvelPrslwreiksdldeelkklyfeaaklntekeeaereled 225
                 +++llv+ ++  + ++++ ++  ++   ++l +   +   +Glvl+ +++lG+  G+    + l+r   +++++e+++l+ e a+++ +++ea+ +l +
  EGE27032.1   5 LIILLVLAFAYSLALVVL-NNQAIA---VNLLFSSVANMSLGLVLVaTIFLGIliGILL-ALLLFR--VFQNKWEISRLKKEKASIQAKLSEANLQLAQ 96 
                 223333333333333333.445555...888888888888***9973688887223332.467889..******************************* PP

       LMBR1 226 llkevkklrksisesdp.l 243
                   +e+++l+ + + ++p l
  EGE27032.1  97 QAEEIRRLELEHQPNKPtL 115
                 *******998888887644 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   2.7     4e-06    0.0055       5      99 ..       8     109 ..       2     126 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4e-06
     UPF0242   5 lisiiflYllPllllaiysiqllseqksWsllsiGl.......llaaaGsLlllllllkwekalkeklekskleekeaklteldeglktkeealeelqe 96 
                 l++  f Y+l l++l    i++     s   +s+Gl       l +++G Ll+lll++ ++++ +    k++ ++ +akl+e + +l++++e+++ l+ 
  EGE27032.1   8 LLVLAFAYSLALVVLNNQAIAVNLLFSSVANMSLGLvlvatifLGILIGILLALLLFRVFQNKWEISRLKKEKASIQAKLSEANLQLAQQAEEIRRLEL 106
                 455567899999988777776655556777889999777777677788888888888888665555554455555556666666666666666666555 PP

     UPF0242  97 eee 99 
                 e++
  EGE27032.1 107 EHQ 109
                 544 PP

>> DUF2381  Protein of unknown function (DUF2381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.6   1.3e-05     0.018     121     171 ..      72     123 ..      69     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
     DUF2381 121 eVsRrarsaealqaelaelrarnealeeelerlr.aarsaarglaglvlsgl 171
                 e+sR +++ +++qa+l+e+  + +++ ee  rl  + ++++++la++ l+++
  EGE27032.1  72 EISRLKKEKASIQAKLSEANLQLAQQAEEIRRLElEHQPNKPTLADATLQQV 123
                 78999******************************************99886 PP

>> DctQ  Tripartite ATP-independent periplasmic transporters, DctQ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   3.5   1.7e-05     0.023      27      86 ..       6      71 ..       3      94 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
        DctQ 27 rylfvwlvflgaalalrrgshirvdll...verlpprvrrlleliadllallfaavliwagw...l 86
                 +l+v +++ ++al++ +++ i+v ll   v  ++ ++  ++ ++  +l+ +++a+l+++ +   +
  EGE27032.1  6 IILLVLAFAYSLALVVLNNQAIAVNLLfssVANMSLGLVLVATIFLGILIGILLALLLFRVFqnkW 71
                578999999******************444455566666666666666666666666655553332 PP

>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.3e-05     0.045      46     113 ..      12      80 ..       2      94 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
       Pam17  46 glllgaavlst.leidptqqilglDplvvlglatlasgalGwllGpvlgsavfkllnrkklkqleekek 113
                 ++++++a++    ++ +++ ++     + lgl+ +a+ +lG l+G +l   +f+++++k+  +  +kek
  EGE27032.1  12 AFAYSLALVVLnNQAIAVNLLFSSVANMSLGLVLVATIFLGILIGILLALLLFRVFQNKWEISRLKKEK 80 
                 44444433322134444777788888899****************************999887777776 PP

>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.6      0.58     8e+02      33      49 ..       2      18 ..       1      22 [. 0.77
   2 ?   14.0   1.7   3.1e-05     0.042       5      27 ..      39      61 ..      36      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.58
  ATPase_gene1 33 pwfliiglllGlaaGfy 49
                  ++ lii+l+l +a ++ 
    EGE27032.1  2 HIILIILLVLAFAYSLA 18
                  57899999999987665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.1e-05
  ATPase_gene1  5 sqiGielvapillggllGywLDk 27
                  +++G+ lva+i+lg+l+G++L  
    EGE27032.1 39 MSLGLVLVATIFLGILIGILLAL 61
                  89*****************9965 PP

>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   8.7   0.00033      0.46     115     192 ..       5      88 ..       1      95 [. 0.67

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00033
        SUR7 115 lfilhiialvlsfislvv..gllaicvspdnsr.llsflnlllsvlsflatllaalldtllfvfvrkkin.....lkefgikaslg 192
                 l il++ a++ s+ ++v+  + +a+  +   s+ + + l l+l   +fl +l++ ll++llf ++++k +      +++ i+a+l+
  EGE27032.1   5 LIILLVLAFAYSLALVVLnnQAIAV--NLLFSSvANMSLGLVLVATIFLGILIGILLALLLFRVFQNKWEisrlkKEKASIQAKLS 88 
                 4566777777777777775544444..22223301333556999999*********************998885555666666665 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   1.4      0.57   7.9e+02       9      26 ..       4      21 ..       1      42 [. 0.53
   2 ?   11.1   0.1   0.00021      0.29       4      70 ..      53     117 ..      43     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.57
     DUF4446  9 lvvillillivllvklkk 26
                +++ill+l+++ ++ l  
  EGE27032.1  4 ILIILLVLAFAYSLALVV 21
                333333333333333332 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00021
     DUF4446   4 lvlavlvvillillivllvklkklkkkykklmkgkdgksleellkekleeveelkeeseelekeiee 70 
                 +++++l+ +ll+ ++ + +++++lkk+  +++ + ++++l+  l+++ ee+++l+ e++ ++ ++++
  EGE27032.1  53 ILIGILLALLLFRVFQNKWEISRLKKEKASIQAKLSEANLQ--LAQQAEEIRRLELEHQPNKPTLAD 117
                 556677778888899999999****9999999988888885..889999999999988887766655 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   4.8    0.0018       2.5     385     433 ..       3      72 ..       1      96 [. 0.54

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0018
     DUF2207 385 alglgliilglilillallllvll........................lvfllilllillliaiivlllfsrl 433
                 +++++l++l+++ +l++++l                             +fl+il+ ill ++++ ++  ++ 
  EGE27032.1   3 IILIILLVLAFAYSLALVVL---NnqaiavnllfssvanmslglvlvaTIFLGILIGILLALLLFRVFQNKWE 72 
                 33444444444444443333...25569999999999999766544444444444444444444444444444 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.8    0.0082        11      31      82 ..      29      77 ..       1      94 [. 0.70

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0082
     DUF4191 31 aaflvvvvvfvvlglllgslilllilgillgllvalivltrraekaayaqie 82
                + +l   v+ + lgl+   l+ +++lgil+g+l+al+++    +k   ++++
  EGE27032.1 29 VNLLFSSVANMSLGLV---LVATIFLGILIGILLALLLFRVFQNKWEISRLK 77
                3333334444444444...688899999999999999998777776666665 PP

>> FeoB_associated  FeoB-associated Cys-rich membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   2.3      0.13   1.7e+02       4      15 ..       3      14 ..       1      24 [. 0.55
   2 ?    6.5   0.1     0.008        11       1      24 [.      47      70 ..      47      80 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.13
  FeoB_associated  4 IVgliiaaavaf 15
                     I+++i+++++++
       EGE27032.1  3 IILIILLVLAFA 14
                     444444444333 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.008
  FeoB_associated  1 atiIVgliiaaavafvirrlikkk 24
                     ati  g++i +++a++++r++++k
       EGE27032.1 47 ATIFLGILIGILLALLLFRVFQNK 70
                     588888888889999999999886 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.7    0.0084        12      55     125 ..       4      70 ..       1      79 [. 0.50

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0084
        DHHC  55 llylllllilalvlllialvklveeekkseflavtllkkllsilllvlsllfllllgllllfhlylilrnl 125
                 +l++ll+l++a  l+l+ l ++    +  +  +++        l+lv  +++++l+g+ll   l+ +++n+
  EGE27032.1   4 ILIILLVLAFAYSLALVVLNNQAIAVNLLFSSVANM----SLGLVLVATIFLGILIGILLALLLFRVFQNK 70 
                 344444444444444444444444444443333332....3455666666777777777777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1811  (0.10101); expected 358.6 (0.02)
Passed bias filter:                      851  (0.047465); expected 358.6 (0.02)
Passed Vit filter:                       138  (0.00769703); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 971.73
//
Query:       EGE27033.1  [L=230]
Description: orotidine 5'-phosphate decarboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-44  149.7   0.1      1e-43  149.6   0.1    1.0  1  OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS famil


Domain annotation for each model (and alignments):
>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   0.1   5.6e-48     1e-43       1     223 [.       5     224 ..       5     226 .. 0.91

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 5.6e-48
                 SEEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHHHHHTHH.HHTHHHHHHHHHTSEEEEEEEE-S-HHHHHHHHHSTCHHHHTTESEEEEEGTGHHH CS
   OMPdecase   1 snLclalDvatarelleladkvgpsivvlKthydlvegwgfegtgaklaalarkhgflifeDrKfaDIGntvekqatagsarikewadivtvhavaGka 99 
                 s++++a+D ++ +++l+lad ++p  + lK++ +l++  g      +++++++++gf++f+D+Kf+DI+nt ++++     +++ +++++++ha++G++
  EGE27033.1   5 SPIIVAVDKHNLNDALSLADSLDPALCRLKVGKELFTVCG-----IQIIKAFHERGFEVFLDLKFHDIPNTTAQAVL---SAADMGVWMTNIHAMVGTD 95 
                 5799************************************.....*******************************6...689**************** PP

                 HHHHHHHHHHHTT.S.EEEEEESTSSGGHHHHHH...H..SHHHHHHHHHHHHHHHTTESEEECCCHTH.HHHHH.TTCSCEEEHHHTTEEEEECTTCC CS
   OMPdecase 100 svkalaeaaekwg.nrgllilaqmsskgnlmlqe...k..gytqacveaarehkaedfvmGfvaqetln.ateed.addfihltpgigleqggdgkgqq 190
                 +++ ++  ++  g +  l++++ ++s++++ l e   +     q c  a   h   ++++G+v++++++  ++++ +++f  +tpgi+l +   +++q 
  EGE27033.1  96 TMRLCKSRLQDGGyDTLLIAVTVLTSMTQANLSElgiQrsVGEQVCHLAGLTHD--SGLDGVVCSAQEAqLLKQKfGKQFRLITPGIRL-VEDAKDDQA 191
                 *********99987778899**************96436444555555556666..9************85555579************.999999*** PP

                 GGGHHHHHHHTTCSEEEESHHHHTSSSHHHHHH CS
   OMPdecase 191 yntpekligiagadiiivGRgIlkagdpveeae 223
                 +  +++++ ++g+d++++GR+I++a++p  +++
  EGE27033.1 192 RICTPAQALQNGSDYLVIGRSITNASNPNDKLH 224
                 ****************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1746.62
//
Query:       EGE27034.1  [L=232]
Description: ExsB family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-77  257.7   0.2    7.7e-77  257.5   0.2    1.0  1  QueC             Queuosine biosynthesis protein QueC
    3.1e-08   33.7   0.0    4.2e-08   33.2   0.0    1.2  1  Asn_synthase     Asparagine synthase
      2e-06   27.1   0.2    4.7e-05   22.6   0.0    2.1  2  NAD_synthase     NAD synthase
    9.1e-05   21.9   0.0    0.00014   21.3   0.0    1.3  1  Arginosuc_synth  Arginosuccinate synthase
    0.00015   21.6   0.1    0.00029   20.6   0.1    1.5  1  ATP_bind_3       PP-loop family
     0.0024   16.7   0.1     0.0044   15.9   0.1    1.4  1  tRNA_Me_trans    tRNA methyl transferase
      0.003   17.1   0.0     0.0049   16.4   0.0    1.3  1  Diphthami_syn_2  Diphthamide synthase
     0.0034   17.0   0.2      0.093   12.3   0.2    2.5  1  ThiI             Thiamine biosynthesis protein (ThiI)
  ------ inclusion threshold ------
      0.031   13.0   0.0      0.035   12.8   0.0    1.1  1  Peptidase_M8     Leishmanolysin
        0.1   12.6   0.0       0.17   11.9   0.0    1.5  2  PAPS_reduct      Phosphoadenosine phosphosulfate reductase fa


Domain annotation for each model (and alignments):
>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.5   0.2   4.3e-80   7.7e-77       2     208 ..       7     222 ..       6     224 .. 0.95

  Alignments for each domain:
  == domain 1  score: 257.5 bits;  conditional E-value: 4.3e-80
                 EEEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT--.-EEEEE-GGGGGGSCGGG---------...--.........----- CS
        QueC   2 avvllSGGlDSttvlalakkegkevealtfdYgqrhkkeleaakkiakelgveehkildldllkelggsaLtdeeievpk...eelee......eelpn 91 
                 avvl+SGGlDStt+l++ak+++k v+a++f Ygqrh++el+aa++iak+l v +h+++d+d +++lggsaLtd + +vp+   +          + +p 
  EGE27034.1   7 AVVLFSGGLDSTTCLYWAKSQFKTVTAVSFCYGQRHSSELHAAQNIAKKLSV-RHHVIDID-IAKLGGSALTDMNLSVPNhdeS---VtysdadQVAPI 100
                 9***************************************************.********.9****************95430...2345565899** PP

                 ---TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHHHH.....HTS--EEE-TTTT--HHHHHHHHHHTTHHHHH-B-STT CS
        QueC  92 tfVpaRNliflslaasyaealgaeaiiiGvneedfsgYPDcrdefvkalnkalnlg.....edkkieieaPlidlsKaeivklgkelgvpleetlsCYe 185
                 t+VpaRN+ifls+a++ ae ++a+aiiiGv+++d+sgYPDcr+++++a+++++nl+     ++++++i aPl++lsKa+++ lg +lgv+++ t+sCY+
  EGE27034.1 101 TYVPARNTIFLSYALAVAEVTQASAIIIGVSSVDYSGYPDCRPDYIAAFETMANLAtvsgrQGNHLSIIAPLQNLSKADTLTLGISLGVDYSMTVSCYQ 199
                 ************************************************************999************************************ PP

                 S.-BTTTTSSSHHHHHHHHHHHH CS
        QueC 186 geeegkaCgeCdaCalRkkgfee 208
                 +++ g+aCg+Cd+C+lR++gf +
  EGE27034.1 200 ADALGRACGHCDSCHLRRQGFMD 222
                 *********************87 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   2.4e-11   4.2e-08      20      80 ..       7      66 ..       1      80 [. 0.91

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2.4e-11
  Asn_synthase 20 vGalLSGGlDSSliaalaarqsksplktFsigfeekgsdeakyakevaehlgtehtelvlt 80
                    +l+SGGlDS++  + a+ q k  ++++s ++ +++s+e+++a+ +a++l ++h+ + ++
    EGE27034.1  7 AVVLFSGGLDSTTCLYWAKSQFK-TVTAVSFCYGQRHSSELHAAQNIAKKLSVRHHVIDID 66
                  56899*****************8.9********99*********************99886 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.6e-08   4.7e-05      18      82 ..       4      66 ..       1      81 [. 0.91
   2 ?    2.4   0.0     0.041        73      16      44 ..     176     205 ..     164     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.6e-08
                  TSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSSTTHHHHHHHHHHHHHHTSEEEE---H CS
  NAD_synthase 18 akgvvlGlSGGvDSslvaalavkalgkenvlalllPssvsseedvedalalaenlgievktidik 82
                   +++v+  SGG+DS++  + a++ +  + v+a+ +   + + +++++a+++a++l+++ ++idi+
    EGE27034.1  4 NQNAVVLFSGGLDSTTCLYWAKSQF--KTVTAVSFCYGQRHSSELHAAQNIAKKLSVRHHVIDID 66
                  56778889*****************..999******999************************97 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.041
                   CTTSEEEEEE-SSHH.HHHHHHHHHHHHTC CS
  NAD_synthase  16 agakgvvlGlSGGvD.Sslvaalavkalgk 44 
                   ++a+ + lG+S GvD S +v++   +alg+
    EGE27034.1 176 SKADTLTLGISLGVDySMTVSCYQADALGR 205
                   467788999999999444567777777765 PP

>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     8e-08   0.00014       2      59 ..       9      65 ..       8      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8e-08
  Arginosuc_synth  2 LaysGGlDtsviikllkeklgeeviavavdvGqee.edldevkekalklgavksvvvDa 59
                     + +sGGlD + ++ + k +  + v av+   Gq +  +l+++++ a+kl+  ++ v+D+
       EGE27034.1  9 VLFSGGLDSTTCLYWAKSQF-KTVTAVSFCYGQRHsSELHAAQNIAKKLSV-RHHVIDI 65
                     569*****************.99**********75279***********98.7777775 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   1.6e-07   0.00029       3      71 ..       8      70 ..       6      79 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.6e-07
                EEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--HHHC CS
  ATP_bind_3  3 lvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkelckklnikleiekvdvakk 71
                +v +SgGlDS++ l++++++ k    +++a+ + +g r++s+   ++ ++++kkl++++++ ++d+ak 
  EGE27034.1  8 VVLFSGGLDSTTCLYWAKSQFK----TVTAVSFCYGQRHSSEL--HAAQNIAKKLSVRHHVIDIDIAKL 70
                7889************999977....8999******9998865..567999999999999999998765 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.5e-06    0.0044       2      70 ..       6      65 ..       5      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.5e-06
  tRNA_Me_trans  2 kvvvalSgGVDSsvaaallkeqgyevigvflklweeedeegkeccaeedlkdaervaeklgiplevvdf 70
                   + vv++SgG DS+  ++  k+q++ v++v +   ++         ++++l+ a+++a+kl+++++v+d+
     EGE27034.1  6 NAVVLFSGGLDSTTCLYWAKSQFKTVTAVSFCYGQR---------HSSELHAAQNIAKKLSVRHHVIDI 65
                   5689************************99876554.........3467899*************9986 PP

>> Diphthami_syn_2  Diphthamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.7e-06    0.0049       3      63 ..       7      69 ..       5      79 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.7e-06
  Diphthami_syn_2  3 vavlysGGkDsilaLykalkesevesLvsvisenkesymfhvv.nv.hlvellaesvGiplik 63
                     ++vl+sGG Ds+  Ly+a  +++    vs    +++s   h+  n+ + +++    + i++ k
       EGE27034.1  7 AVVLFSGGLDSTTCLYWAKSQFKTVTAVSFCYGQRHSSELHAAqNIaKKLSVRHHVIDIDIAK 69
                     689******************999999999999999888886524413445555566666655 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   5.2e-05     0.093       4     154 ..       5     182 ..       3     201 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.2e-05
        ThiI   4 gkvlaLlSgGiDSpVaaylllkRGcrvvlvhlknepgtseeaiekveklaellaeyqtslev.............klvvvdfkevlkeilekvkeklti 89 
                  ++++L SgG+DS    y + +    v +v +  +      + +  +++a++l+  +  +++             +l v +++e ++       ++ t 
  EGE27034.1   5 QNAVVLFSGGLDSTTCLYWAKSQFKTVTAVSFC-YGQRHSSELHAAQNIAKKLSVRHHVIDIdiaklggsaltdmNLSVPNHDESVTYSDADQVAPITY 102
                 57899**************99999999999996.44444455566677777776554443331110000000000344444444444433344556666 PP

        ThiI  90 vllkr.kmlriAekvaeeegakalvtGesLgq............VaSqtleNlrvis..avvnllilrPLigldKeeiik 154
                 v  +   +l  A  vae ++a+a++ G s                a  t+ Nl  +s  +  +l i+ PL  l+K +   
  EGE27034.1 103 VPARNtIFLSYALAVAEVTQASAIIIGVSSVDysgypdcrpdyiAAFETMANLATVSgrQGNHLSIIAPLQNLSKADTLT 182
                 66664146677777788888887777755332111122222221244666666666511334666666666666666555 PP

>> Peptidase_M8  Leishmanolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.9e-05     0.035     123     203 ..      50     134 ..      45     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
  Peptidase_M8 123 qlhaerLkvrqvqgkikvtgmdgdvCse..fkvPekhvtvGvsdaDlvlyvasvPseegv.lawavtC.qlfsdgrpvvgvinip 203
                   q  a++L+vr    +i ++++ g +  +    vP++  +v  sdaD v  ++ vP+ +++ l++a+   ++ +    ++gv  ++
    EGE27034.1  50 QNIAKKLSVRHHVIDIDIAKLGGSALTDmnLSVPNHDESVTYSDADQVAPITYVPARNTIfLSYALAVaEVTQASAIIIGVSSVD 134
                   556789******************999855678***********************97653788876415666666667766655 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.6e-05      0.17       2      59 ..       7      64 ..       6     129 .. 0.89
   2 ?   -2.9   0.0       3.5   6.2e+03     117     144 ..     154     180 ..     150     191 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.6e-05
                 EEEE--SSCTCHHHHHHHHHHCTTHEEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE CS
  PAPS_reduct  2 lvvsvsgGkdslVllhLalkafkpvpvvfvdtghefpetiefvdeleeryglrlkvye 59
                  vv++sgG ds+  l  a + fk v+ v    g+ ++  +   +++++++ +r +v +
   EGE27034.1  7 AVVLFSGGLDSTTCLYWAKSQFKTVTAVSFCYGQRHSSELHAAQNIAKKLSVRHHVID 64
                 79************************************************88866654 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.5
                  TSSSEEECTTT-SCEEE-.CCCT--HHHH CS
  PAPS_reduct 117 klpiveidedfekslrvf.PllnWteedv 144
                  +l+ v+ ++ ++  l +  Pl n ++ d 
   EGE27034.1 154 NLATVSGRQGNH--LSIIaPLQNLSKADT 180
                  555555566655..444448888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1771.16
//
Query:       EGE27035.1  [L=215]
Description: multiple antibiotic resistance (MarC)-related protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-46  156.4  15.2    7.3e-46  156.1  15.2    1.0  1  MarC             MarC family integral membrane protein
  ------ inclusion threshold ------
       0.72    9.3   7.7       0.11   12.0   3.4    1.7  2  DUF3087          Protein of unknown function (DUF3087)


Domain annotation for each model (and alignments):
>> MarC  MarC family integral membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1  15.2   8.1e-50   7.3e-46       3     203 .]       4     211 ..       3     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 156.1 bits;  conditional E-value: 8.1e-50
        MarC   3 aiikafvsLlaiinplgnvpvflslleevskeerkrialkasilallillvfllfGelilklfgisidalkiaGgillfliaidmlkakqkk....... 94 
                 +iik ++ ++++inp +++++f+  ++ +s e ++r+a+ as  +++ +++f lfGe++l+ +gis+ ++++aGgillflia+ m++  ++        
  EGE27035.1   4 EIIKIILAFIVLINPSAALAMFVNFTHGYSYEDKRRVARIASATVFIAIAFFSLFGEIMLRGLGISLGSFRVAGGILLFLIALGMMNDGNNPvkpnede 102
                 589999********************************************************************************8766553333321 PP

        MarC  95 ekkkkseeeeseekdeiavvPLAlPliaGPgaittvlvlaseassivekvavvlaillaalitllilllsslilrllgktginaleRlmGllLvalavq 193
                  + ++ ++++  +   iavvPLA+P++ GPg i+tv++ +s++s iv + ++++a l + ++++l+l+ +  i++llg tg+n+++R+mG++L+a+a++
  EGE27035.1 103 LELSQPKAKDPSSLTGIAVVPLAIPMMVGPGGISTVIIYSSQVSGIVGMSLIIVAGLCISILCYLSLMAAGQISKLLGDTGLNIINRIMGIILAAVAIE 201
                 2233333444455678*********************************************************************************** PP

        MarC 194 livdGikeil 203
                 ++v+G+++i+
  EGE27035.1 202 IVVAGLRTIF 211
                 *******986 PP

>> DUF3087  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.22     2e+03      19      38 ..      42      55 ..      32      89 .. 0.53
   2 ?   12.0   3.4   1.2e-05      0.11      17      71 ..     155     208 ..     151     210 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.22
     DUF3087 19 ivalvallavlsllfstlli 38
                 +a +++++++++       
  EGE27035.1 42 RIASATVFIAIAF------F 55
                3333333333332......2 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.2e-05
     DUF3087  17 rvivalvallavlsllfstllialfgeeevsnfhlnllGvvlalvltaailrklk 71 
                 +v   ++++l  lsl+ +  + +l+g+++  n+   ++G++la+v + +++  l+
  EGE27035.1 155 IVAGLCISILCYLSLMAAGQISKLLGDTGL-NIINRIMGIILAAVAIEIVVAGLR 208
                 567789********************9999.999************999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1574.05
//
Query:       EGE27036.1  [L=648]
Description: tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-40  138.2   0.0    5.9e-40  136.0   0.0    2.1  2  Methyltransf_30  S-adenosyl-L-methionine-dependent methyltran
    2.5e-27   96.4   0.0    4.6e-27   95.5   0.0    1.5  1  DAO              FAD dependent oxidoreductase
    4.2e-12   45.9   0.1    2.5e-07   30.2   0.0    2.0  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    5.1e-07   29.8   0.1    1.4e-06   28.4   0.1    1.8  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    1.2e-06   28.6   0.2     0.0042   17.1   0.1    2.6  2  NAD_binding_9    FAD-NAD(P)-binding
    2.1e-05   23.9   0.0      0.042   13.1   0.0    3.2  3  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    7.5e-05   23.2   0.1    0.00015   22.3   0.1    1.5  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
     0.0069   15.1   0.2      0.031   13.0   0.1    1.9  2  HI0933_like      HI0933-like protein
     0.0089   15.2   0.4       0.02   14.0   0.1    1.7  2  GIDA             Glucose inhibited division protein A
     0.0089   15.4   0.0          2    7.6   0.0    2.4  2  Amino_oxidase    Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
      0.014   14.3   0.4      0.028   13.3   0.1    1.6  2  Trp_halogenase   Tryptophan halogenase
      0.043   12.9   0.1      0.073   12.1   0.1    1.3  1  FAD_binding_2    FAD binding domain
       0.07   13.0   0.2       0.14   12.1   0.2    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.12   11.7   0.1       0.21   10.9   0.1    1.3  1  FAD_oxidored     FAD dependent oxidoreductase
       0.14   11.5   0.0       0.28   10.4   0.0    1.4  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
        0.2   11.6   0.1       0.41   10.6   0.1    1.5  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
       0.22   10.7   0.0       0.36   10.0   0.0    1.2  1  FAD_binding_3    FAD binding domain


Domain annotation for each model (and alignments):
>> Methyltransf_30  S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   0.0   5.6e-43   5.9e-40       3     121 ..     122     246 ..     120     248 .. 0.96
   2 ?   -1.7   0.0       2.4   2.6e+03       3      45 ..     361     403 ..     359     405 .. 0.84

  Alignments for each domain:
  == domain 1  score: 136.0 bits;  conditional E-value: 5.6e-43
                      GHHHHHHHHHHTS-S-SEEEEEEETTTTEEEEEEES-HHHHHHHC-.......T-EEEEEE-SS-TTTSGGGCSHHHHHHHHHHEEEEEEEEES CS
  Methyltransf_30   3 leelakallkeyllalaglqrlelaaeevtlklligdarealkeld.......ekadawFlDgFsPaknPelwseellkelarllkkkgtlaty 89 
                      +++++ al++ y+l+lag++rl+l+ e++tl+l++g+a + l+e+         ++dawFlDgF PaknP++ws+ l+k++a+l++ k+t+at+
       EGE27036.1 122 FSDWVDALIQVYPLPLAGCHRLHLS-EKITLDLWFGEALDTLNEIAnnqhehsIRIDAWFLDGFTPAKNPDMWSDALFKAMAQLSHRKTTVATF 214
                      678999******************6.9*****************99899998889*************************************** PP

                      ---HHHHHHHHHTT-EEEEEE-CTCSSEEEEE CS
  Methyltransf_30  90 ssAgavrrgLkeaGfkvekrkgfgrKremlka 121
                      ++Ag+vrrgL++aGf++ k+ gfgrKr+ml+ 
       EGE27036.1 215 TAAGFVRRGLIDAGFDMVKSAGFGRKRQMLCT 246
                      *****************************985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
                      GHHHHHHHHHHTS-S-SEEEEEEETTTTEEEEEEES-HHHHHH CS
  Methyltransf_30   3 leelakallkeyllalaglqrlelaaeevtlklligdarealk 45 
                       ++ ++al++ey+++l +++  + +++++  +l   d+ + ++
       EGE27036.1 361 TAKKRQALIDEYPKSLISTHYPQKDSSALGQDLRQTDIVAHIP 403
                      567789999******9999999999999999999888888776 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   4.3e-30   4.6e-27       1     352 []     266     617 ..     266     617 .. 0.67

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 4.3e-30
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHH..HHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlsl..ealeelreleeelgididyrrtGllslaadeee 95 
                 +++iiGGGi G+stA +L+ rg  V l+e +di + gaSg+  +l+++ l  l +as  ++ +   ++++++++++        +++ G+l     +  
  EGE27036.1 266 KIAIIGGGISGVSTAAALSHRGheVHLFEPDDIMA-GASGNPCALFSPKLTLLDNASNHLPTVSflYSYRHYKAMNLYS---QIFDQIGVLDFLLPS-- 358
                 59*****************9999********9999.**************76776654433333124445555554322...23999****998543.. PP

                 HHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTST........TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..E CS
         DAO  96 lealdkllallleagldaelldaeevrelepalp........gllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve..r 184
                 +   +k++al     ++ +l++ +   ++++  +        ++++  + p +g++ p   ++ l + +  +        +v++l+e++++v+      
  EGE27036.1 359 QKTAKKRQALID--EYPKSLISTH-YPQKDSS-AlgqdlrqtDIVA--HIPMGGILYPINIAKLLKKHFIHHPF------KVVRLQEQENRVVLTAfdG 445
                 222323333322..2344566665.3333322.1234344335555..9*******************976654......5555555443433332442 PP

                 ECTEEEEEEEEEEE--GGGHHHH.HTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEE..TTSEEEEEESSE...EETTCSS CS
         DAO 185 ttpgendaadavVnaaGawsdll.gllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtpr..kdgrvlvGgtad...eesgddd 277
                  ++++n+++d+vV+aaG  s ++ ++l       + +rgqv  l  l+++ + +++  ++  +  dg++++++ +   + ++l+G++     +    ++
  EGE27036.1 446 -KSHQNFSFDQVVIAAGFASHFIdNRL----FNCRKIRGQVTWL-ALTNSDDPKKPTQATNAIKYDGYSTEFFDSksQSKSLLFGASFIrnnT----ET 534
                 .33445578********9988774333....3559******888.55554444444444444999999999999833445799***9844441....33 PP

                 TSCSHHHHHHHHHHHHHHSGG....G...CGEE.EEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 278 pevdeedidellealrklfPq....l...gdvl.rkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGkllael 352
                  + ++++     ++ ++ +P+    l   +d   + ++G+r+ +pd  pl+g+ + +++++ ++G ++ G+++ap ++++la+l
  EGE27036.1 535 -KLSDDEHLSNFQKFSQALPNycqsLnisKDTHfEGRVGIRAqTPDYHPLVGKLSDSDHIFCLYGMGSKGFSFAPFCAEILADL 617
                 .55555555555555555555443223334444349******77*********77899************************97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   6.6e-08     7e-05     137     177 ..     259     299 ..     252     310 .. 0.85
   2 !   30.2   0.0   2.4e-10   2.5e-07       1     112 [.     265     465 ..     265     480 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.6e-08
                  CCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 137 klkllpkrivvvGgGyiGvElAaalaklgkevtlveardrl 177
                  +   +pk+i+++GgG  Gv +Aaal+  g+ev+l e  d++
   EGE27036.1 259 QIGFKPKKIAIIGGGISGVSTAAALSHRGHEVHLFEPDDIM 299
                  6677899**************************99986665 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 2.4e-10
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE........TTHCHHHCSHHHHCHHHHHHHHHHHHH................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve........legtclnggcllskallgvaedaeias................................. 57 
                  k++++iGgG+ G+++a  l++ g++v+l+e        +++ c ++ + l + l +++ +  ++s                                 
   EGE27036.1 265 KKIAIIGGGISGVSTAAALSHRGHEVHLFEpddimagaSGNPCALFSPKL-TLLDNASNHLPTVSflysyrhykamnlysqifdqigvldfllpsqkt 361
                  589**************************988988888999999998888.67888888888888999****************************** PP

                  ..................................................HHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEE CS
                  ..................................................xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ..................................................evvkklnqg.ielllgeevvkidpgkkkvklekkkegdeekiaydklv 104
                                                                    +  k l+++ i+     +vv++ +++ +v+l++ ++++++++ +d++v
   EGE27036.1 362 akkrqalideypkslisthypqkdssalgqdlrqtdivahipmggilypiNIAKLLKKHfIHHPF--KVVRLQEQENRVVLTAFDGKSHQNFSFDQVV 457
                  ********************************************999998666666667444444..4****9999*****99999************ PP

                  E---EEE- CS
                  xxxxxxxx RF
  Pyr_redox_2 105 lAtGsspr 112
                  +A G+ ++
   EGE27036.1 458 IAAGFASH 465
                  ****8654 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   1.4e-09   1.4e-06       1      34 [.     269     302 ..     269     306 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.4e-09
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGr 34 
                    I+G+G+sG ++A++L+ +g++v+l+e  d   G 
     EGE27036.1 269 IIGGGISGVSTAAALSHRGHEVHLFEPDDIMAGA 302
                    9*************************99887775 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     4e-06    0.0042       1      39 [.     268     301 ..     268     313 .. 0.91
   2 !    8.8   0.0    0.0014       1.5     118     154 ..     422     461 ..     413     463 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4e-06
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgag 39 
                    ai+G+G++G++++++L +r      +e++lf+p+ ++ag
     EGE27036.1 268 AIIGGGISGVSTAAALSHR-----GHEVHLFEPDDIMAG 301
                    8***************999.....59*******998766 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0014
  NAD_binding_9 118 evhraevvdleeradgqavlladg...aslaadaVvLAlG 154
                     +h  +vv+l+e+++++ ++  dg   +++ +d+Vv+A G
     EGE27036.1 422 IHHPFKVVRLQEQENRVVLTAFDGkshQNFSFDQVVIAAG 461
                    577789**********98888666222569********99 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.023        24     253     277 ..      56      81 ..      40      98 .. 0.81
   2 !   13.1   0.0   3.9e-05     0.042     162     198 ..     262     298 ..     244     319 .. 0.84
   3 ?    2.5   0.0     0.069        72     230     271 ..     423     466 ..     409     489 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.023
  Pyr_redox_3 253 kkvevkddvvla.tGykpdlsflkks 277
                   ++++++++v+a tG+   l+fl+ +
   EGE27036.1  56 GQLTKNERFVIAeTGFGTGLNFLAVC 81 
                  5788999999999**********863 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.9e-05
  Pyr_redox_3 162 yagqkvvViGgknSavDaAlelvrkgaeVtvvtrgse 198
                  ++ +k+++iGg+ S+v +A  l  +g+eV+++ +++ 
   EGE27036.1 262 FKPKKIAIIGGGISGVSTAAALSHRGHEVHLFEPDDI 298
                  67899**************************998875 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.069
  Pyr_redox_3 230 lfnaevkeikekeeeykvktedgkkvev..kddvvlatGykpdl 271
                  +   +v +++e+e+++ +++ dgk++++   d+vv+a G+ +++
   EGE27036.1 423 HHPFKVVRLQEQENRVVLTAFDGKSHQNfsFDQVVIAAGFASHF 466
                  4455699999999***99999999988766899999****9864 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   1.4e-07   0.00015       1      34 [.     266     299 ..     266     308 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.4e-07
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkl 34 
                 k++++GgG +g+  A+al++ g++V+++e  d +
  EGE27036.1 266 KIAIIGGGISGVSTAAALSHRGHEVHLFEPDDIM 299
                 79***************************98866 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1     3e-05     0.031       2      31 ..     266     295 ..     265     300 .. 0.92
   2 ?   -0.8   0.0      0.44   4.6e+02     131     166 ..     427     464 ..     418     465 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3e-05
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllek 31 
                  ++++iGgG +G+ +A+++++rg++V l+e 
   EGE27036.1 266 KIAIIGGGISGVSTAAALSHRGHEVHLFEP 295
                  799*************************96 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.44
                  -EEEEECETTE.EEEEE...TTEEEEESEEEE----SS CS
  HI0933_like 131 evksvekeedgkfrvkt..kseeeleadklvlAtGGlS 166
                  +v +++++e++++  +   ks+++++ d++v+A G +S
   EGE27036.1 427 KVVRLQEQENRVVLTAFdgKSHQNFSFDQVVIAAGFAS 464
                  56666666666555554456999**********99776 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.9e-05      0.02       1      30 [.     266     295 ..     266     313 .. 0.84
   2 ?   -3.1   0.0       2.9     3e+03     274     298 ..     423     449 ..     415     462 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLith 30 
                 ++ +iGgG +G+  A+a++ +G++v L+ +
  EGE27036.1 266 KIAIIGGGISGVSTAAALSHRGHEVHLFEP 295
                 589************************943 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
                 CC..CCCCSTT-S--EEEEEESSTT-- CS
        GIDA 274 ed..kivrladkeshqvfLepeglete 298
                 ++  k+vrl+++e+ +v    +g++ +
  EGE27036.1 423 HHpfKVVRLQEQENRVVLTAFDGKSHQ 449
                 555588888888887777766766655 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0019         2       1      24 [.     274     297 ..     274     299 .. 0.96
   2 ?    5.1   0.0     0.011        12     216     262 ..     413     462 ..     400     472 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0019
                    HHHHHHHHHHHHTTEEEEEEESSS CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEard 24 
                    ++G ++A  L+++G++V ++E +d
     EGE27036.1 274 ISGVSTAAALSHRGHEVHLFEPDD 297
                    8********************987 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.011
                    HHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEE...EESEEEE-S-H CS
  Amino_oxidase 216 laeelrgldirlntrVkeikregdgvtvtledgevv...eaDaVvvTvpl 262
                    +a+ l++  i+   +V +++ +++ v +t  dg++    ++D+Vv+++ +
     EGE27036.1 413 IAKLLKKHFIHHPFKVVRLQEQENRVVLTAFDGKSHqnfSFDQVVIAAGF 462
                    566666777888889999999**********99999999********976 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.7e-05     0.028       1      37 [.     266     299 ..     266     309 .. 0.90
   2 ?   -2.7   0.0       1.8   1.9e+03     184     216 ..     437     469 ..     426     474 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
                     EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS- CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgklevtlveseeig 37 
                     ki i+GGG++G  +Aaal++ +   +ev l e ++i 
      EGE27036.1 266 KIAIIGGGISGVSTAAALSHRG---HEVHLFEPDDIM 299
                     79******************99...89*999999986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
                     TS-EEEEEETTS-EEE-SEEEE-SGGG-IIIII CS
  Trp_halogenase 184 dgrveslrledgreveadlfiDcsGfrgllieq 216
                     +   ++++ ++ +++++d ++ + Gf++  i++
      EGE27036.1 437 RVVLTAFDGKSHQNFSFDQVVIAAGFASHFIDN 469
                     445577888888999999999999999988876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   6.9e-05     0.073       2      33 ..     267     298 ..     266     314 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.9e-05
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33 
                    + +iG+G++G + A++++++G++v + e  + 
     EGE27036.1 267 IAIIGGGISGVSTAAALSHRGHEVHLFEPDDI 298
                    67***********************9987665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00013      0.14       1      32 [.     266     297 ..     266     305 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdise 32 
                 k+a+iG G+ G + aa++ ++g+eV+l++ ++
  EGE27036.1 266 KIAIIGGGISGVSTAAALSHRGHEVHLFEPDD 297
                 69*************************99875 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0002      0.21       2      36 ..     267     301 ..     266     306 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGG 36 
                   + ++GGg++Gv  A a   +G +v L e+++ + G
    EGE27036.1 267 IAIIGGGISGVSTAAALSHRGHEVHLFEPDDIMAG 301
                   78**************************9987655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027      0.28      25      58 ..     261     294 ..     256     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                  CB---EEEEESTSHHHHHHHHHHHHTT-EEEEEE CS
  AlaDh_PNT_C  25 gvepakvlviGgGvaGlqAiatakglgakVtvlD 58 
                  g +p k+ +iGgG+ G++ +a+ +  g +V +++
   EGE27036.1 261 GFKPKKIAIIGGGISGVSTAAALSHRGHEVHLFE 294
                  56799****************9999999999886 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00039      0.41       1      30 [.     266     295 ..     266     305 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvr 30 
                     kia++G+G  G + A++l+++ghev+l+  
      EGE27036.1 266 KIAIIGGGISGVSTAAALSHRGHEVHLFEP 295
                     7*************************9975 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00034      0.36       4      31 ..     267     294 ..     265     300 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00034
                    EEEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlve 31 
                    ++I+G+G +G+++a  Ls +G +v+l e
     EGE27036.1 267 IAIIGGGISGVSTAAALSHRGHEVHLFE 294
                    78*******************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4519.67
//
Query:       EGE27037.1  [L=97]
Description: YciI-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-18   67.1   0.0    1.6e-18   66.9   0.0    1.0  1  YCII      YCII-related domain
     0.0075   16.6   0.0     0.0093   16.3   0.0    1.2  1  DUF1330   Domain of unknown function (DUF1330)


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   1.8e-22   1.6e-18       2      94 ..       3      91 ..       2      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 1.8e-22
                EEEEEEEE-TTGHHHHHHHHHHHHHHHHHHHHTTGEEEEEEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEEEEEEEEE CS
        YCII  2 lyvilaydkpasleeraallaahlayleelkkeGvllaaGpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlveerevkef 94
                l+vi+ +d  +sl++r + ++ahl++l+ l + ++l++aGp++ + G+ a    + g+++++e++d  +a+++a++dP++ aG++ ++ v++f
  EGE27037.1  3 LFVIIGHDVADSLDQRTKARPAHLERLNTLMAYNRLILAGPTPIAHGESA----MSGSVVVAEFEDIHAAKAWAEADPYIIAGVYHHVDVRPF 91
                699**********************************************9....89***********************************99 PP

>> DUF1330  Domain of unknown function (DUF1330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     1e-06    0.0093      34      73 ..      38      77 ..      18      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1e-06
     DUF1330 34 flvrggkvevlEGdeeptrlvvieFpsveaarawyeSpeY 73
                ++ +g ++ +    + +  +vv eF+++ aa+aw e + Y
  EGE27037.1 38 LILAGPTPIAHGESAMSGSVVVAEFEDIHAAKAWAEADPY 77
                4444444444444488899****************99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 733.91
//
Query:       EGE27038.1  [L=422]
Description: hypothetical protein EA1_04310 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-29  102.7   0.9    4.6e-27   95.4   0.9    2.4  1  DUF2868   Protein of unknown function (DUF2868)
  ------ inclusion threshold ------
       0.14   12.3   0.0       0.28   11.3   0.0    1.5  1  DUF3785   Protein of unknown function (DUF3785)


Domain annotation for each model (and alignments):
>> DUF2868  Protein of unknown function (DUF2868)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.9   5.2e-31   4.6e-27      20     291 ..     166     401 ..     140     417 .. 0.80

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 5.2e-31
     DUF2868  20 r..grllrwlllvlshlfwlafllGalltlllllatrdlaFgWetTLlsastfhtltqalalpwswlGfavPsleqveasrivlkdglalaaaalrsWa 116
                    ++  rw ++ + h++wl  l+G +l++l+l+++++++F We+TLl + +f +l+ ++++++s+lG+ +Ps+     s            ++  + a
  EGE27038.1 166 DtiKPIKRWQIASILHGAWLFGLMGSILGMLGLFLFKSYSFHWESTLLTDHHFDRLITIIGYIPSQLGIVLPSAS----S------------QTPAQFA 248
                 3668899**************************************************************999964....2............3345667 PP

     DUF2868 117 pfLllalltYGllPRllllllsllrqrralarlpldlslpgyqaLlarlqtpsletgvndaaapePeaapepkaeaepepasepadvlelelderlael 215
                  + + ++++Y++lPRl+++l s++++r    ++++d++ p+y+ L++  ++  ++      + ++P++++ +    +++      ++++le +  + + 
  EGE27038.1 249 ILAMTSVIIYAILPRLAAYLYSRIKARQ---QFRIDTKAPYYANLMNFYRQTIINAD----DYQSPKPTTIAPIVLSDR-----LVIAALEKPYYHHPI 335
                 78899*******************9987...99****************66666554....456666666665555555.....567788888777665 PP

     DUF2868 216 elraglgvrvaasaadgGrld.drearsrvlaslaesaparvlllvdasqpPdretlrfLrelraaageqrvvllll 291
                  ++a         ++d+G +d   +    ++++l+ s  a+++l ++   +Pdr+++r +++l+++   +  +l+ +
  EGE27038.1 336 PINA---------IKDFGVIDtHAQIKMLLADALHLS--AQIYLIINTDTVPDRGIVRKVERLASHQFGIIAMLVGE 401
                 5555.........79******5555555555666665..9************************9977766666665 PP

>> DUF3785  Protein of unknown function (DUF3785)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.1e-05      0.28      70     116 ..      14      61 ..       2      75 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.1e-05
     DUF3785  70 sfafleyhfyiytkdnkyvistiekeyeglsfnkll.ragkvdd.syiv 116
                   + le + yi+t+d k + + ++ e +g++f+kl+ ra+k+d  + i+
  EGE27038.1  14 VIRRLEAQNYIFTQDPKIITEAVKLE-NGTAFDKLFiRAQKIDSdARIM 61 
                 456789999*******9887777666.89*****96599***9514454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       992  (0.0553294); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 2958.45
//
Query:       EGE27039.1  [L=275]
Description: RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-15   54.7  17.1      8e-15   54.7  17.1    1.8  2  Fer4_21   4Fe-4S dicluster domain
    8.2e-10   38.2   0.7    8.2e-10   38.2   0.7    2.1  1  FeS       Putative Fe-S cluster
    5.1e-08   32.4  29.6      3e-05   23.6   7.5    3.2  3  Fer4      4Fe-4S binding domain
    2.3e-06   28.1  28.9    4.6e-05   23.9  15.1    2.6  3  Fer4_7    4Fe-4S dicluster domain
    2.8e-06   27.4  13.2    2.8e-06   27.4  13.2    2.3  2  Fer4_9    4Fe-4S dicluster domain
    1.9e-05   25.5  15.4    0.00074   20.4   2.4    3.2  4  Fer4_16   4Fe-4S double cluster binding domain
    7.5e-05   22.8  13.3    7.5e-05   22.8  13.3    2.9  3  Fer4_10   4Fe-4S dicluster domain
     0.0028   18.5   6.3      0.085   13.7   0.0    3.0  2  Fer4_22   4Fe-4S dicluster domain
     0.0032   17.5   5.8     0.0032   17.5   5.8    3.1  3  Fer4_6    4Fe-4S binding domain
  ------ inclusion threshold ------
      0.018   15.1  22.4      0.047   13.8   3.5    3.2  3  Fer4_2    4Fe-4S binding domain
      0.054   12.7   2.6      0.078   12.2   2.6    1.2  1  DUF763    Protein of unknown function (DUF763)
      0.083   13.9   5.2      0.083   13.9   5.2    3.4  3  Fer4_3    4Fe-4S binding domain
       0.17   11.8   0.9       0.28   11.2   0.9    1.3  1  DUF4426   Domain of unknown function (DUF4426)
       0.49   11.0  21.4          6    7.5   7.6    3.4  5  Fer4_17   4Fe-4S dicluster domain
       0.52   10.8  18.9        0.7   10.4   2.8    3.1  4  Fer4_8    4Fe-4S dicluster domain
       0.55   10.4  13.3       0.21   11.8   2.1    2.7  2  Fer4_18   4Fe-4S dicluster domain
        6.6    7.5  22.3       0.14   12.8   2.7    3.0  3  Fer4_4    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       5.8   6.2e+03      10      14 ..      43      47 ..      33      53 .. 0.70
   2 !   54.7  17.1   7.6e-18     8e-15       1      58 [.     111     164 ..     111     165 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.8
     Fer4_21 10 gCgkC 14
                +Cg+C
  EGE27039.1 43 QCGLC 47
                45554 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 7.6e-18
     Fer4_21   1 AridedkCigCgkCliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPvedcie 58 
                 A+i+e++CigC+kC+ aC+   ++ai ++ak+++ +++d C+GC+lC+++CPv dci+
  EGE27039.1 111 AIIQEADCIGCTKCIPACP---VDAIVGTAKHMHSIITDLCTGCELCLAPCPV-DCID 164
                 89*****************...8*****************************9.**97 PP

>> FeS  Putative Fe-S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.7   7.8e-13   8.2e-10       1      33 []      39      72 ..      39      72 .. 0.98

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 7.8e-13
         FeS  1 LPgtNCgaCGyp.gCmafAealvegeaqledCpp 33
                LP+t+Cg CG++ gC+++A  +v +++ +++C+p
  EGE27039.1 39 LPQTQCGLCGHHdGCLPYAYGIVMHGEAINLCVP 72
                9**********99*******************97 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.2       1.2   1.3e+03      10      14 ..      43      47 ..      42      48 .. 0.81
   2 !   23.6   7.5   2.9e-08     3e-05       2      23 ..     112     133 ..     111     134 .. 0.92
   3 !   20.5   5.8   2.8e-07   0.00029       3      23 ..     143     163 ..     141     164 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
                S-THH CS
        Fer4 10 gCGaC 14
                 CG+C
  EGE27039.1 43 QCGLC 47
                79999 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 2.9e-08
                 EEETTTSSS-THHHHHSTTTEE CS
        Fer4   2 videekCigCGaCvevCPvgAI 23 
                 +i e +CigC +C+ +CPv+AI
  EGE27039.1 112 IIQEADCIGCTKCIPACPVDAI 133
                 688999***************9 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 2.8e-07
                 EETTTSSS-THHHHHSTTTEE CS
        Fer4   3 ideekCigCGaCvevCPvgAI 23 
                 i++++C+gC +C   CPv++I
  EGE27039.1 143 IITDLCTGCELCLAPCPVDCI 163
                 899*****************9 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   5.9   4.9e-06    0.0052      18      52 .]      98     132 ..      41     132 .. 0.61
   2 !   23.9  15.1   4.3e-08   4.6e-05       2      51 ..     118     161 ..     117     162 .. 0.90
   3 !   13.0   3.1   0.00011      0.12       2      22 ..     148     168 ..     147     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.9e-06
      Fer4_7  18 eldeeenekgtekveidpekClgCgaCvavCPtga 52 
                 ++d+ +n ++  ++ i++ +C+gC++C+ +CP++a
  EGE27039.1  98 QIDPLTNRPKEVRAIIQEADCIGCTKCIPACPVDA 132
                 4556666666677889999*************997 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 4.3e-08
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenekgtekveidpekClgCgaCvavCPtg 51 
                 CigC +C +aCpv+ai  + +      +   i  + C+gC+ C a CP++
  EGE27039.1 118 CIGCTKCIPACPVDAIVGTAK------HMHSIITDLCTGCELCLAPCPVD 161
                 ******************886......3357889**************97 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00011
      Fer4_7   2 CigCgaCvaaCpvkaieldee 22 
                 C+gC+ C a Cpv++i++ ++
  EGE27039.1 148 CTGCELCLAPCPVDCIDVIPH 168
                 9************99997654 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.96     1e+03      34      41 ..      42      49 ..      22      71 .. 0.70
   2 !   27.4  13.2   2.7e-09   2.8e-06       1      51 []     117     163 ..     117     163 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.96
      Fer4_9 34 eaCigCga 41
                ++C  Cg 
  EGE27039.1 42 TQCGLCGH 49
                34544543 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 2.7e-09
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCgaCveaCpkgai 51 
                 +C+gC++C++aCp +++v+ a++    ++      C+gC+ C++ Cp ++i
  EGE27039.1 117 DCIGCTKCIPACPVDAIVGTAKHMHSIITD----LCTGCELCLAPCPVDCI 163
                 5********************999999876....6************9987 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       9.4   9.9e+03      56      60 ..      43      47 ..      27      49 .. 0.68
   2 !   20.4   2.4   7.1e-07   0.00074       2      21 ..     118     137 ..     117     144 .. 0.87
   3 !   13.8   0.4   8.3e-05     0.087       2      20 ..     148     166 ..     147     202 .. 0.72
   4 ?   -1.9   0.1       6.4   6.7e+03      19      45 ..     220     244 ..     210     258 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 9.4
     Fer4_16 56 gCdiC 60
                 C+ C
  EGE27039.1 43 QCGLC 47
                34433 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 7.1e-07
     Fer4_16   2 CgtCgkCaevCPtnaikekk 21 
                 C++C+kC+ +CP++ai +++
  EGE27039.1 118 CIGCTKCIPACPVDAIVGTA 137
                 ****************9884 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 8.3e-05
     Fer4_16   2 CgtCgkCaevCPtnaikek 20 
                 C++C+ C+  CP+++i+  
  EGE27039.1 148 CTGCELCLAPCPVDCIDVI 166
                 ***************9855 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.4
     Fer4_16  19 ekkekeiearecisyntaekkdlaede 45 
                 ++  ++ e++e  ++n +   +l++++
  EGE27039.1 220 QR--QNTEIDEIHAKNAIAAAKLRTQI 244
                 33..33444444444444444444443 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3       2.5   2.7e+03       7      13 ..      42      48 ..      34      54 .. 0.68
   2 !   22.8  13.3   7.1e-08   7.5e-05       2      56 .]     111     159 ..     110     159 .. 0.86
   3 !   14.2   2.8   3.3e-05     0.034       4      24 ..     143     174 ..     140     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
     Fer4_10  7 dtCirCg 13
                 +C  Cg
  EGE27039.1 42 TQCGLCG 48
                4566665 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 7.1e-08
     Fer4_10   2 vvidddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 ++i++  Ci+C+kC  aCP+           + + + ++  + Ctgc+ C + CP
  EGE27039.1 111 AIIQEADCIGCTKCIPACPV------DAIVGTAKHMHSIITDLCTGCELCLAPCP 159
                 689999**************......55555666777888999***********9 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 3.3e-05
     Fer4_10   4 idddtCirCgkCvkaCPadl...........t 24 
                 i +d C++C+ C + CP+d            +
  EGE27039.1 143 IITDLCTGCELCLAPCPVDCidviphlrqlsD 174
                 66899*************77666665554440 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   8.1e-05     0.085      69      95 ..     105     131 ..      80     132 .. 0.81
   2 ?    5.9   1.6     0.022        23      75      95 ..     141     161 ..     134     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.1e-05
     Fer4_22  69 klsefkekfgesgCvGCgRCieacpvk 95 
                 + +e+++ ++e  C+GC +Ci acpv+
  EGE27039.1 105 RPKEVRAIIQEADCIGCTKCIPACPVD 131
                 4556666679999***********985 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.022
     Fer4_22  75 ekfgesgCvGCgRCieacpvk 95 
                 +++ +  C+GC  C + cpv+
  EGE27039.1 141 HSIITDLCTGCELCLAPCPVD 161
                 5556789***********985 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   2.1       8.5     9e+03      11      15 ..      43      47 ..      42      53 .. 0.80
   2 !   17.5   5.8     3e-06    0.0032       4      24 .]     113     133 ..     110     133 .. 0.91
   3 !    8.7   6.2    0.0018       1.9       4      23 ..     143     162 ..     142     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.5
      Fer4_6 11 gCgdC 15
                +Cg C
  EGE27039.1 43 QCGLC 47
                78888 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3e-06
      Fer4_6   4 idpdkCigCgdCvrvCPegai 24 
                 i++  CigC +C+ +CP +ai
  EGE27039.1 113 IQEADCIGCTKCIPACPVDAI 133
                 78889*************998 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0018
      Fer4_6   4 idpdkCigCgdCvrvCPega 23 
                 i  d+C+gC+ C + CP + 
  EGE27039.1 143 IITDLCTGCELCLAPCPVDC 162
                 6789*************876 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.9       4.4   4.7e+03      11      16 ..      42      47 ..      42      53 .. 0.83
   2 ?   13.8   3.5   4.5e-05     0.047       6      21 ..     115     129 ..     110     130 .. 0.80
   3 ?   13.7   2.0   4.8e-05      0.05       5      21 ..     143     159 ..     140     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.4
      Fer4_2 11 igCgaC 16
                ++Cg C
  EGE27039.1 42 TQCGLC 47
                589999 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.5e-05
      Fer4_2   6 dtdrCigCgaCvsaCP 21 
                 ++d CigC +C+ aCP
  EGE27039.1 115 EAD-CIGCTKCIPACP 129
                 455.************ PP

  == domain 3  score: 13.7 bits;  conditional E-value: 4.8e-05
      Fer4_2   5 vdtdrCigCgaCvsaCP 21 
                 + td C+gC+ C+  CP
  EGE27039.1 143 IITDLCTGCELCLAPCP 159
                 5699********888** PP

>> DUF763  Protein of unknown function (DUF763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.6   7.4e-05     0.078     159     251 ..     180     271 ..     177     275 .] 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.4e-05
      DUF763 159 eeerlARRYhwlseelesfveephsgiagekkeeevlnlvskeseearkaildlvkekpekllkelkelkallkgekklklpakhevlekvle 251
                 e+++l RRYh + +++  ++e++ + ++++ ++  ++n+ ++++++  + i    +  + kl++++k+l++ l+ +++++l++k + l+++l+
  EGE27039.1 180 EQNHLRRRYHQHLDRVAMTIEQGTKPVVSTIESA-MVNVLNQRQNTEIDEIHAKNAIAAAKLRTQIKKLNKQLTLKADADLQNKLDKLNAKLS 271
                 788999***********************66665.9999999988888888877777888999999999988888887777776666665555 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.2       3.3   3.5e+03       2       7 ..      42      47 ..      42      50 .. 0.85
   2 ?   13.9   5.2   7.9e-05     0.083       1      15 []     118     132 ..     118     132 .. 0.98
   3 ?    5.5   9.3     0.037        39       1      14 [.     148     161 ..     148     162 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 3.3
      Fer4_3  2 tgCgaC 7 
                t+Cg+C
  EGE27039.1 42 TQCGLC 47
                57**99 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.9e-05
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 C+gC  C  +CPv+A
  EGE27039.1 118 CIGCTKCIPACPVDA 132
                 *************98 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.037
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 CtgC++C+  CPv+
  EGE27039.1 148 CTGCELCLAPCPVD 161
                 ************97 PP

>> DUF4426  Domain of unknown function (DUF4426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9   0.00026      0.28      23      83 ..     178     236 ..     174     267 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
                 HHHHTT----TTEEEEEEEEEE.TTE...E--EEEEEEEE-TT--EEEE--EEEEETTEEE CS
     DUF4426  23 vAkaygieRskykglvnisvlkksekgkeavsakvsgkaknllgqskeLefrevkegdaiy 83 
                 + ++++++R+ ++ l  ++++   e+g+++v  +++  + n l+q+++ e+ e++ ++ai 
  EGE27039.1 178 ITEQNHLRRRYHQHLDRVAMTI--EQGTKPVVSTIESAMVNVLNQRQNTEIDEIHAKNAIA 236
                 7788999999999999999886..67888*****************************995 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.6         2   2.2e+03       4      53 ..      43      48 ..      30      77 .. 0.80
   2 ?    7.5   7.6    0.0057         6      17      58 ..      83     130 ..      42     133 .. 0.59
   3 ?    6.2  12.0     0.015        16       2      58 ..     118     160 ..     117     163 .. 0.78
   4 ?    7.5   3.9    0.0059       6.2       2      14 ..     148     160 ..     147     201 .. 0.64
   5 ?   -2.8   0.0       9.3   9.8e+03      25      41 ..     217     233 ..     208     250 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2
     Fer4_17  4 qCgyClpeCpsyeaydnepkkllraaklglleeaekeekaslCieCgeCe 53
                qCg C                                             
  EGE27039.1 43 QCGLC--------------------------------------------G 48
                44444............................................3 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0057
     Fer4_17  17 aydnepkkllraakl......glleeaekeekaslCieCgeCerkCPq 58 
                 ++ n+p k++   ++      ++ +e+ +  +  +Ci+C +C  +CP 
  EGE27039.1  83 NILNKPTKPATPSQWqidpltNRPKEVRAIIQEADCIGCTKCIPACPV 130
                 456666666655555444443333333333456899999999999996 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.015
     Fer4_17   2 CiqCgyClpeCpsyeaydnepkkllraaklglleeaekeekaslCieCgeCerkCPq 58 
                 Ci+C  C+p+Cp  ++ ++ ++  +             +   +lC++C++C + CP 
  EGE27039.1 118 CIGCTKCIPACPVDAIVGTAKH--MH------------SIITDLCTGCELCLAPCPV 160
                 9***********9999887222..22............235689***********96 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0059
     Fer4_17   2 CiqCgyClpeCps 14 
                 C++C+ Cl+ Cp 
  EGE27039.1 148 CTGCELCLAPCPV 160
                 7777777777775 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 9.3
     Fer4_17  25 llraaklglleeaekee 41 
                 +l++ ++++++e+++++
  EGE27039.1 217 VLNQRQNTEIDEIHAKN 233
                 45555665666655543 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2       1.6   1.7e+03       7      12 ..      43      48 ..      41      89 .. 0.79
   2 ?   10.4   2.8   0.00067       0.7       4      17 ..     117     130 ..     114     145 .. 0.72
   3 ?    7.4   3.9    0.0059       6.2      48      63 ..     145     160 ..     133     162 .. 0.71
   4 ?    8.8   3.4    0.0021       2.2       5      17 ..     148     165 ..     144     214 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.6
      Fer4_8  7 eCgaCq 12
                +Cg+C 
  EGE27039.1 43 QCGLCG 48
                677775 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00067
      Fer4_8   4 kCieCgaCqsaCpv 17 
                 +Ci+C  C  aCpv
  EGE27039.1 117 DCIGCTKCIPACPV 130
                 7***********95 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0059
      Fer4_8  48 lwsCttcgaCtevCpv 63 
                  + Ct+c+ C   Cpv
  EGE27039.1 145 TDLCTGCELCLAPCPV 160
                 5667777777777776 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0021
      Fer4_8   5 CieCgaCqsaCp.....v 17 
                 C++C++C + Cp     v
  EGE27039.1 148 CTGCELCLAPCPvdcidV 165
                 888888888887444441 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.1    0.0002      0.21      50      74 ..     107     131 ..      95     144 .. 0.77
   2 ?    3.0   3.9       0.1   1.1e+02      58      76 ..     145     164 ..     133     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
     Fer4_18  50 keerkekgagdcidcescvkvcPtg 74 
                 ke r+  +++dci c +c+  cP++
  EGE27039.1 107 KEVRAIIQEADCIGCTKCIPACPVD 131
                 6667777889999999999999986 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.1
     Fer4_18  58 agdcidcescvkvcPtg.id 76 
                 +  c+ ce c++ cP++ id
  EGE27039.1 145 TDLCTGCELCLAPCPVDcID 164
                 456************96356 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.7       5.2   5.5e+03       5      10 ..      42      47 ..      42      47 .. 0.86
   2 ?   12.8   2.7   0.00013      0.14       4      16 ..     118     130 ..     111     131 .. 0.91
   3 ?    5.7   4.5     0.023        25       2      16 ..     146     160 ..     145     165 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5.2
      Fer4_4  5 igCgsC 10
                ++Cg C
  EGE27039.1 42 TQCGLC 47
                68**99 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00013
      Fer4_4   4 CigCgsCvaaCPq 16 
                 CigC +C+ aCP+
  EGE27039.1 118 CIGCTKCIPACPV 130
                 ************7 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.023
      Fer4_4   2 erCigCgsCvaaCPq 16 
                 + C+gC  C a CP+
  EGE27039.1 146 DLCTGCELCLAPCPV 160
                 78***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1273  (0.0710023); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1998.05
//
Query:       EGE27040.1  [L=283]
Description: putative NADH pyrophosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-14   54.4   0.0    2.2e-14   53.6   0.0    1.3  1  NUDIX          NUDIX domain
    5.1e-09   35.6   8.5      1e-08   34.6   8.5    1.6  1  zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
     0.0013   18.8   3.6     0.0023   17.9   3.6    1.3  1  DZR            Double zinc ribbon
     0.0037   16.9   3.3        1.1    9.0   0.3    2.4  2  zinc_ribbon_2  zinc-ribbon domain
  ------ inclusion threshold ------
      0.051   13.8   0.0       0.11   12.7   0.0    1.5  1  TrkA_N         TrkA-N domain
      0.089   12.8   0.2       0.16   12.0   0.2    1.4  1  HypA           Hydrogenase/urease nickel incorporation, metal
       0.33   10.8   2.8         10    6.0   0.3    2.4  2  HscB_4_cys     Co-chaperone HscB tetracysteine metal binding 
       0.56   10.2   5.3        1.2    9.1   5.3    1.6  1  Nudix_N_2      Nudix N-terminal
        2.5    7.8   6.4        1.3    8.7   1.5    2.3  2  zf_UBZ         Ubiquitin-Binding Zinc Finger
        2.6    7.6   5.3         63    3.2   5.3    2.4  1  zf-ribbon_3    zinc-ribbon domain
        2.7    8.0   5.2        4.5    7.3   5.2    1.3  1  DUF1451        Zinc-ribbon containing domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.4e-17   2.2e-14      14     117 ..     170     265 ..     157     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.4e-17
                 TSEEEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEECSGCSSTSTTTEEEEEEE CS
       NUDIX  14 kgevLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl.eevegelepndenevsevrwv 110
                 k+++Ll+r++ ++++g + l++G+ve gEt+  A++RE+ EE+Gl  +++++++         +p++ +  +++ f    +eg+++ + +ne+ +++++
  EGE27040.1 170 KQQILLARHH-HHKSGiYGLIAGFVEVGETLSMAVHREVYEEVGLLIDDIRYFD--------SQPWPHPSNLMVGFIaNYKEGQINIQ-RNELVDAQFF 258
                 345******9.99999888*************************9778888888........56888888999999978999999998.********** PP

                 EHHHHHH CS
       NUDIX 111 pleellk 117
                 ++++l +
  EGE27040.1 259 DIDQLPP 265
                 ****933 PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   8.5   6.4e-12     1e-08       2      32 .]     119     150 ..     118     150 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 6.4e-12
  zf-NADH-PPase   2 thrFCgrCGaptepaeg.gwarvCpaCglehY 32 
                    +h+FC+rCGa+t   +  ++a+ Cp C+++ Y
     EGE27040.1 119 DHQFCSRCGAKTTHHPQgEHAKICPKCRHHAY 150
                    7**************999***********987 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   3.6   1.4e-06    0.0023       9      45 ..     117     156 ..     115     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.4e-06
         DZR   9 ppdarfCseCgtklkavaa...edrCpsCgekvdpearfC 45 
                 ++d +fCs+Cg+k    ++   ++ Cp+C + + p+ + C
  EGE27040.1 117 HNDHQFCSRCGAKTTHHPQgehAKICPKCRHHAYPRVQPC 156
                 6899*********987777999********9988876666 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.3    0.0007       1.1      14      22 ..     121     129 ..     118     130 .. 0.75
   2 !    8.2   0.2    0.0013       2.1      11      22 ..     137     148 ..     134     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0007
  zinc_ribbon_2  14 kFCpyCGtp 22 
                    +FC++CG++
     EGE27040.1 121 QFCSRCGAK 129
                    788888886 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0013
  zinc_ribbon_2  11 dnakFCpyCGtp 22 
                    + ak Cp+C+++
     EGE27040.1 137 EHAKICPKCRHH 148
                    5799*****996 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     7e-05      0.11      35      81 ..      64     110 ..      58     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7e-05
                 HHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHH CS
      TrkA_N  35 eelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavl 81 
                 + + + gl + +gd+ d++++++++i +++ ++++++++  n++a +
  EGE27040.1  64 NDAIKLGLIFAYGDGYDTKTVRNLKIVSFREFLTVMDNKMLNLMARA 110
                 56677788899********************************9865 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   9.8e-05      0.16      48      96 ..      96     149 ..      82     158 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.8e-05
                 HHHHHCC.T..TTT-EEEEEEE--EEEETTTS-EEECHH..H.HHS-TTTSSS- CS
        HypA  48 fellaegtv..legaeLeieevpvkvrCreCgkefelee..k.alrCpkCgsad 96 
                 ++++ ++ +  +++a + i   + +  C++Cg++++++   + a  CpkC ++ 
  EGE27040.1  96 LTVMDNKMLnlMARAIMLIGWHNDHQFCSRCGAKTTHHPqgEhAKICPKCRHHA 149
                 555554444436677777888888999*****99996653436679****9875 PP

>> HscB_4_cys  Co-chaperone HscB tetracysteine metal binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3    0.0063        10      15      25 ..     118     128 ..     115     129 .. 0.83
   2 ?    4.6   0.2     0.018        30      12      24 ..     134     146 ..     130     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0063
                 S---B-TTT-- CS
  HscB_4_cys  15 gdefFCpqCRA 25 
                  d  FC++C A
  EGE27040.1 118 NDHQFCSRCGA 128
                 6889*****66 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.018
                 SS-S---B-TTT- CS
  HscB_4_cys  12 pgrgdefFCpqCR 24 
                 p +++   Cp+CR
  EGE27040.1 134 PQGEHAKICPKCR 146
                 66778888****9 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.3   0.00077       1.2       2      30 ..     122     147 ..     121     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00077
                 B-TTT--B-EEE--TT-SS-EEEETTTTE CS
   Nudix_N_2   2 FCsqCGtpvelripdgDnreRlvCpaCgt 30 
                 FCs CG+++++  p+g++    +Cp+C +
  EGE27040.1 122 FCSRCGAKTTH-HPQGEHA--KICPKCRH 147
                 ********766.5889988..59****87 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.5   0.00081       1.3       1      20 [.     119     138 ..     119     139 .. 0.90
   2 ?    1.2   0.2      0.17   2.8e+02       4      11 ..     141     148 ..     140     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00081
      zf_UBZ   1 dtylCerCgkeipeselqEH 20 
                 d+++C+rCg++  ++ + EH
  EGE27040.1 119 DHQFCSRCGAKTTHHPQGEH 138
                 689********999999999 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.17
      zf_UBZ   4 lCerCgke 11 
                 +C++C ++
  EGE27040.1 141 ICPKCRHH 148
                 7****976 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   5.3     0.039        63       2      22 ..     120     145 ..     119     147 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.039
  zf-ribbon_3   2 tvrCPnCGapls.....sddnvCpyC 22 
                  +++C++CGa+ +     + +++Cp+C
   EGE27040.1 120 HQFCSRCGAKTThhpqgEHAKICPKC 145
                  57999999864322222567777777 PP

>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.2    0.0028       4.5     116     146 ..     122     153 ..     118     154 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0028
     DUF1451 116 vCekCgkelalk.kteeippCpkCgateFrRe 146
                  C +Cg++++ + + e+ + CpkC+++ + R 
  EGE27040.1 122 FCSRCGAKTTHHpQGEHAKICPKCRHHAYPRV 153
                 6*****98765526788999*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2119.21
//
Query:       EGE27041.1  [L=432]
Description: DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-41  142.1   0.0    2.3e-41  141.3   0.0    1.4  1  RNase_H         RNase H
    8.7e-35  120.7   0.1    1.3e-34  120.1   0.1    1.3  1  RNase_T         Exonuclease
    2.9e-06   27.4   0.0    5.4e-06   26.5   0.0    1.5  1  DUF5051         3' exoribonuclease, RNase T-like
  ------ inclusion threshold ------
      0.091   12.5   0.1        0.2   11.3   0.1    1.5  2  DNA_pol_A_exo1  3'-5' exonuclease


Domain annotation for each model (and alignments):
>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.0   5.2e-45   2.3e-41       5     142 ..       6     146 ..       2     147 .. 0.88

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 5.2e-45
                 EEEEEEEEECTTTCE....EEEEEE.CTT...EEEEEEECCCCHHHHHHHHHHHHHHHTT.SCSEEEEEES-HHHHHHHHCCCHHHHHTTSSSETTSSB CS
     RNase_H   5 vvYtDGsclgnpgeg....gagavl.ykeg.arnisapleeaqtnnraELsAvieaLkalksdekvniytDSkYvvkgitqwvhrwkknawkttseqkp 97 
                 + YtDG+c+gn ++g    g+g+ l y++g +r++    +  +tnnr+EL+A+i+aL+a  ++  +++ tDS Yv +gitqw+ +wk ++wk+++ + p
  EGE27041.1   6 IAYTDGACKGNGKQGvsagGWGVYLhYFNGdERHLWGGEP-DTTNNRMELMAAITALEATPAQIPLQLWTDSGYVKDGITQWIGGWKLRGWKKADGK-P 102
                 67*********766666669***55599984445556555.9****************988889999************************766665.* PP

                 HTTHHHHHHHHHCHCSSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H  98 vknkdlaellkelakkkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142
                 v n+dl+++l++l++++ + ++w+kgHaG+  gNemaD+lA++++
  EGE27041.1 103 VLNQDLWQRLDQLTQNRIIDWQWIKGHAGH-AGNEMADQLANKGV 146
                 ******************************.5*********9986 PP

>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.1     3e-38   1.3e-34       1     165 []     214     374 ..     214     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 3e-38
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESS CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgfl 99 
                 +++D+Ettg++    d+i+e++ ++++g++  +g+  h+y++p+++  ++d +++++gi+++++ ++p+f ev+++++e++  +++++ahnaafd++fl
  EGE27041.1 214 LIMDTETTGFNEAGGDRIVEVGIVELVGRKF-TGNILHVYINPEKH--MDDAVIQVHGISNAFVADKPKFAEVAQQIYEFMA-GSEVIAHNAAFDMKFL 308
                 589*********88****************7.9999**********..**********************************.99************** PP

                 HHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSS.TSSHHHHHHHHHHHH CS
     RNase_T 100 raadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgr.aHrAldDaeataklf 165
                 ++++ r +  ++++  +++dtl l+k+ +++ ++ sld+l ++lg+ +  r  H Al D e +a+++
  EGE27041.1 309 NMEFNRAGLSNFANSVKVTDTLALAKQMYPGQKN-SLDALVKRLGVGQKDRtFHGALLDSEILAEVY 374
                 *********************************8.*****************************997 PP

>> DUF5051  3' exoribonuclease, RNase T-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.2e-09   5.4e-06       2     160 ..     213     372 ..     212     378 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.2e-09
     DUF5051   2 klmiDiEtlgne..etaelvsIGaVffpetG.eFyaeidlesdeeag.idaetieWWlkqskearaellkdtqeakslkdalqaleeFlekslkvwang 96 
                 +l++D+Et+g +   +  +v++G+V +   G +F  +i     ++ + +d++ i     q + + ++++ d   ++++ +++q++ eF+    +v+a++
  EGE27041.1 213 QLIMDTETTGFNeaGGDRIVEVGIVEL--VGrKFTGNILHVYINPEKhMDDAVI-----QVHGISNAFVAD---KPKFAEVAQQIYEFM-AGSEVIAHN 300
                 5789*****987667789*******55..5777777776655554444555554.....555555666644...69*************.4889***** PP

     DUF5051  97 asfDlviLraafel...lipwkywndrdvrtlvalapelekgeekkreipfe........gvkHnALaDAkhqak 160
                 a+fD++ L+  f++   +   ++ n  +v    ala+++  g++++ ++  +         + H AL D +  a+
  EGE27041.1 301 AAFDMKFLNMEFNRaglS---NFANSVKVTDTLALAKQMYPGQKNSLDALVKrlgvgqkdRTFHGALLDSEILAE 372
                 **************6651...566665554444444333333333333322233343334556777777666665 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.3     1e+04      25      34 ..     216     225 ..     212     232 .. 0.79
   2 ?   11.3   0.1   4.5e-05       0.2      44     128 ..     264     351 ..     254     359 .. 0.73

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.3
                     EEEEEE-SSS CS
  DNA_pol_A_exo1  25 vDtEttsldl 34 
                     +DtEtt+ + 
      EGE27041.1 216 MDTETTGFNE 225
                     79***99875 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.5e-05
                     EEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHH.......HTS--SSEEEH.HHHHHHTTHSTTSSHHHHHHHH CS
  DNA_pol_A_exo1  44 iqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlard.......fgielenlfdt.mlaayvldyershsLdsLaeky 128
                     iq+   ++a++ d+ +  ++  ++++ ++++ +  +++ hna fD+++l  +          +   + dt  la+++   ++  sLd L++++
      EGE27041.1 264 IQVHGISNAFVADKPKFAEV--AQQIYEFMAGS--EVIAHNAAFDMKFLNMEfnraglsNFANSVKVTDTlALAKQMYPGQK-NSLDALVKRL 351
                     56666677888888888885..55555555533..69*************99877777744555567777677776665555.9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3111.03
//
Query:       EGE27042.1  [L=233]
Description: putative methyltransferase protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-25   88.9   0.0    3.5e-25   88.4   0.0    1.2  1  Methyltransf_4   Putative methyltransferase
    6.3e-05   22.8   0.0    0.00018   21.3   0.0    1.9  2  Methyltransf_31  Methyltransferase domain
    6.5e-05   23.6   0.0    0.00019   22.1   0.0    1.8  2  Methyltransf_25  Methyltransferase domain
      0.001   18.9   0.1     0.0014   18.4   0.1    1.2  1  DUF938           Protein of unknown function (DUF938)
     0.0058   15.7   0.0     0.0071   15.4   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase
  ------ inclusion threshold ------
      0.059   12.7   0.0      0.088   12.1   0.0    1.2  1  GidB             rRNA small subunit methyltransferase G
      0.082   13.6   0.0       0.21   12.3   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
        0.2   11.4   0.0        0.3   10.8   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   1.6e-28   3.5e-25       2     144 ..      52     189 ..      51     212 .. 0.89

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 1.6e-28
                     -EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTS CS
  Methyltransf_4   2 apvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllq 96 
                     +p++leiG GkG++ ++ A  n+dk +++iE  ++  ++  k+++  el+Nl  ++ da+++  ++++++sl+++fil+P P + ++   +R l+
      EGE27042.1  52 TPLFLEIGAGKGKHAMQFAGLNADKHLIAIERTREKFNAFQKQAALGELNNLTFVHADAITFCVHFIAPNSLDGVFILYPNPEPHNKN--QRWLN 144
                     799********************************************************************************99998..899** PP

                     HHHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCSTTEEESSCCCS CS
  Methyltransf_4  97 pellkelarvLkkgGvlelaTDveeyaeemlkvleeeplferlskeee 144
                       + + l ++Lk gG++++a+ +e y  e+++ l+e  ++     +++
      EGE27042.1 145 MPFFEFLLSRLKAGGFVRIASNIESYIDEACQLLDEVWRL---PYTKY 189
                     **********************************998444...34444 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.1e-08   0.00018       7      78 ..      55     126 ..      49     178 .. 0.91
   2 ?   -1.9   0.0       1.2   2.6e+03      43      76 ..     195     227 ..     194     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.1e-08
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl.ledekfDli 78 
                      +l++G+G+G+ + ++a  l+ +++++ i+++ e  +  ++ a+  +l+n++F ++d+ ++  + +++++ D +
       EGE27042.1  55 FLEIGAGKGKHAMQFA-GLNADKHLIAIERTREKFNAFQKQAALGELNNLTFVHADAITFCVHfIAPNSLDGV 126
                      599*************.999************************************99876677777777765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
  Methyltransf_31  43 lArenaqklgldnveFeqgdieelekl.ledekfD 76 
                      +Ar++ + + l + e++q+ i +++ + ++  +fD
       EGE27042.1 195 SARTHFEIKYLARGELCQEIILTKP-AcYQ-TRFD 227
                      6899999999999999999999998.5577.7887 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.5   5.5e+03      62      88 ..      18      47 ..      11      50 .. 0.55
   2 !   22.1   0.0   8.6e-08   0.00019       2      72 ..      56     130 ..      55     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.5
                     TTTEEEEEEESTGG...GSSHHHHHHHHHH CS
  Methyltransf_25 62 dgsfDlvvssgalh...hlsdedlekalke 88
                     +++fD  + +  lh    ++d+d++++++ 
       EGE27042.1 18 SHRFDRLFDAKFLHapkTVQDQDRQNIFQS 47
                     556666666432442224666666666665 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 8.6e-08
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS..S.STTTEEEEEEES CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlp..f.edgsfDlvvssg 72 
                      L++G+G+G++++++a    ++++++++ + e  +a +++a+  +l n++fv++da ++   f + +s D v++ +
       EGE27042.1  56 LEIGAGKGKHAMQFAGLNADKHLIAIERTREKFNAFQKQAALGELnNLTFVHADAITFCvhFiAPNSLDGVFILY 130
                      9**************99659********************887779*********77542256889999999864 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   6.3e-07    0.0014      18      79 ..      45     105 ..      32     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.3e-07
      DUF938  18 LksylakttervLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlkp 79 
                  +s  a+t    LEi++G G+HA+ fA +    + ++ +  +e +++ +++a+   l+nl++
  EGE27042.1  45 FQSLTANTP-LFLEIGAGKGKHAMQFAGLNADKHLIAIERTREKFNAFQKQAALGELNNLTF 105
                 444455555.59***************************99999988888888777888765 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.2e-06    0.0071       8      90 ..      25     115 ..      18     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.2e-06
                 CG--EE--HHHHHHHHHHH-GG.....TTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S.-HHHHHHHHCHTT.TCCCEEEE-S-CCGHHH CS
      RrnaAD   8 ygqnflknkkvineIldklnle.....ekltvleigpGkGilTeeLakra..kqvvvlEl.derLakllqkkls.kdeklkvvhqDflkfet 90 
                 +  +fl+ +k++++  +  n+      ++   leig+GkG    ++a     k++ ++E  +e++ ++ +++   + ++l+ vh+D+ +f +
  EGE27042.1  25 FDAKFLHAPKTVQDQDR-QNIFqsltaNTPLFLEIGAGKGKHAMQFAGLNadKHLIAIERtREKFNAFQKQAALgELNNLTFVHADAITFCV 115
                 55667777777765433.33332455566667**************766667*******7366666665554447889*********99865 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.9e-05     0.088      43     107 ..      46     110 ..      36     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.9e-05
                 GCS-CCC-.EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-C CS
        GidB  43 ellkekrdkviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklenveiveara 107
                 + l+ +   ++ +G+G G  ++  a ++++++l+ +e++  k +  ++  +  +l+n+++v+a+a
  EGE27042.1  46 QSLTANTPLFLEIGAGKGKHAMQFAGLNADKHLIAIERTREKFNAFQKQAALGELNNLTFVHADA 110
                 55555665599*********************************999999999*********997 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.3e-05      0.21       1      67 [.      56     128 ..      56     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.3e-05
                      EEET-TTSHHHHHHH.HTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCC..TS.S-TT-EEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaeala.krg..arvvgvDlskemlklakekaseegl.kvefvvadaek..lp.fednsfDlvvs 67 
                      L++G+G+G++a ++a      +++++++ + e  ++ +++a   +l +++fv+ada +  +  ++ ns D v++
       EGE27042.1  56 LEIGAGKGKHAMQFAgL-NadKHLIAIERTREKFNAFQKQAALGELnNLTFVHADAITfcVHfIAPNSLDGVFI 128
                      89*************53.357*******99999977777666666679********985444356688888875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013       0.3      77     133 ..      55     110 ..      43     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                 EEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-G CS
        PCMT  77 vLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDG 133
                  Le+G+G G ++  +a l  +k  +++ier++e  ++ +++    +l+n+++v++D 
  EGE27042.1  55 FLEIGAGKGKHAMQFAGLNADKH-LIAIERTREKFNAFQKQAALGELNNLTFVHADA 110
                 59**************9877776.9************99999999999*****9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1834.61
//
Query:       EGE27043.1  [L=402]
Description: putative pyridine nucleotide-disulfide oxidoreductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-80  270.7   0.0    2.1e-80  270.4   0.0    1.0  1  HI0933_like    HI0933-like protein
    4.7e-06   26.1   0.0    1.1e-05   24.8   0.0    1.6  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    8.5e-06   25.6   0.1      0.053   13.1   0.0    2.5  3  DAO            FAD dependent oxidoreductase
    9.4e-05   22.6   0.0    0.00031   20.9   0.0    2.0  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0031   16.8   0.0      0.005   16.1   0.0    1.3  1  FAD_binding_3  FAD binding domain
     0.0045   17.5   0.0      0.094   13.3   0.1    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0073   15.6   0.0      0.014   14.8   0.0    1.6  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
       0.01   15.0   0.0       0.24   10.4   0.0    2.4  3  FAD_binding_2  FAD binding domain
      0.067   13.2   0.0       0.29   11.1   0.0    2.1  1  NAD_binding_9  FAD-NAD(P)-binding
       0.14   12.0   0.0       0.25   11.2   0.0    1.3  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
       0.52    9.3   1.5        1.9    7.5   0.1    2.0  2  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.4   0.0   1.3e-83   2.1e-80       2     407 ..       4     391 ..       3     393 .. 0.89

  Alignments for each domain:
  == domain 1  score: 270.4 bits;  conditional E-value: 1.3e-83
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETT-SGGGEEES...STTTTHHHHHHS-HHHHHHHHHHTT--EEE-STT CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGrcNvTnlseepeellsrypenpkflksalsrftnedlialveelgvelkeedsg 99 
                  +++viG+GaAGlmaA+ ++    +V ++e++++++rKil++G+ ++N+++ se++e++++ry+ n + l   l+ f+++ ++a++++lg+e  +++sg
   EGE27043.1   4 KIAVIGAGAAGLMAAEVLSLYPVSVDVYEHKPTAARKILMAGKTGLNISH-SEPFETFVDRYTPN-DWLTGYLQSFHADHIVAWMASLGIESYIGSSG 99 
                  799***********************************************.**********8876.6899**************************** PP

                  EEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.....TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT--EEEEEEE CS
  HI0933_like 100 rlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktk....seeeleadklvlAtGGlSiPklGstgkgyklaeqfghtivplrpa 193
                  r+Fpv++ka+++v+a+l++l+ +gv+++++++ ++++ +  ++ ++++k    ++   + d+++lA+GG S+  lGs+g++ ++ ++    ++pl+++
   EGE27043.1 100 RIFPVEMKASKLVRAWLSRLNGRGVRFYYRHRCTQISGRVLSFDKLDAKaeliDSFCANYDAVILACGGGSYRALGSDGAWQQWFDKDL--LTPLYAS 195
                  ************************************7666665555553222245566789***********************99865..68***** PP

                  S--EE--HHHHHCGGGTT-EEEEEEE...ECTTEEEEEEEEE-SSEEESHHHHHHTTT-......-TT--EEEECSTTS-...HHHHHHHHHHHTTTS CS
  HI0933_like 194 lvpltlkesklklkelsGvslkavvlslkkkkkatekgellfThrGlsGpailqlSsyvakalekkeeetleidllPdldaeelkaalekekekeskk 291
                  +v+  +++s + +  l G++lk +++s+   +k++ +g++++ h+Gl+ ++i++l + + ++ +k+++ +l++dl+Pd++++++++ l+++k+k    
   EGE27043.1 196 NVGVLVDWSSF-MVPLFGQPLKRIQISV---GKKSYQGDAIISHYGLESGLIYRLNRAM-RCCQKENGFHLSVDLMPDKSVDTIHHILSQTKRK---- 284
                  *******9987.89***********988...899999*********************9.88889***********************999843.... PP

                  BHHHHHTTTS-HHHHHHHHHC..TTT-TTBGGG--HHHHHHHHHHHHSEEE--SEE--TTT-SEEEEEE-GGGB-TTT-BBTTSTTEEE-GGGBSEEE CS
  HI0933_like 292 slknalaellpkrlvevlleealieeedkklaqlskkelkklaealkaltvkvngteglrkaevTaGGVdlkevssktmeskkvpgLffaGEvlDveg 389
                  sl    ++ll+ +     ++ + +    + + +  + + +k+a  +k+lt++ +g +++++a++T GG++  ++ ++ ++  k +g+f+aGE+lD+++
   EGE27043.1 285 SL----NTLLK-KAGLDAVKISIL---RECTPKADWSDTAKMAVHIKNLTIQATGFRPIDEAISTGGGIKRIALGND-LQLIKESGVFCAGEMLDWDA 373
                  33....44443.344444444333...445778899999********************************999865.6688999************* PP

                  -TTTHHHHHHHHHHHHHH CS
  HI0933_like 390 vtGGynlqaAwasgyaAG 407
                  +tGGy+l+a+ a+g aA+
   EGE27043.1 374 PTGGYLLTACMATGRAAA 391
                  ****************98 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   6.7e-09   1.1e-05       2     121 ..       4     181 ..       3     201 .. 0.78
   2 ?   -3.3   0.0       2.5     4e+03     232     244 ..     327     339 ..     293     370 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 6.7e-09
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHH.HCHHHHHHHHHHHHH......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx......................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcll.skallgvaedaeias......................................... 57 
                  +++viG+G+AGl aa+ l+ + + v ++ + + +  +++l+  k+ l++++ +  ++                                         
   EGE27043.1   4 KIAVIGAGAAGLMAAEVLSLYPVSVDVY-EHKPTAARKILMaGKTGLNISHSEPFETfvdrytpndwltgylqsfhadhivawmaslgiesyigssgr 100
                  89**************************.55555566666635556666665555558899999999999999999999******************* PP

                  .............HHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEEC....TCEEEEEESEEEE---E.EE-BCTCTTC.T CS
                  .............xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Pyr_redox_2  58 .............evvkklnqg.ielllgeevvkidpgkkkvklekkke....gdeekiaydklvlAtGs.sprdlgipGvae 121
                                 +++ln   +++++++ +++i  g+  +   k++      d +   yd+++lA G+ s r lg +G+ +
   EGE27043.1 101 ifpvemkasklvrAWLSRLNGRgVRFYYRHRCTQI-SGR-VLSFDKLDAkaelIDSFCANYDAVILACGGgSYRALGSDGAWQ 181
                  ******99999995556677666999999889999.555.555544443556656677889********62666668888844 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.5
                  EE-S-EEES-HHC CS
                  xxxxxxxxxxxxx RF
  Pyr_redox_2 232 vvavGvrpstell 244
                  + a+G+rp +e +
   EGE27043.1 327 IQATGFRPIDEAI 339
                  4445555554444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0003       0.5       1      33 [.       4      38 ..       4      58 .. 0.89
   2 !   13.1   0.0   3.3e-05     0.053     145     205 ..     108     171 ..      97     197 .. 0.76
   3 ?   -2.7   0.0       2.1   3.4e+03     323     350 ..     349     391 ..     315     392 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0003
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                ++++iG+G +Gl +A  L+  +  V ++e ++ a+
  EGE27043.1  4 KIAVIGAGAAGLMAAEVLSLYPvsVDVYEHKPTAA 38
                59****************99999999999886665 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EECTEEEE....EEEEEEE--GGGHH CS
         DAO 145 pakltaalaraaealGveilegtevtgleeedgkvwgve..rttpgend....aadavVnaaGawsd 205
                 + kl++a ++++  +Gv+++++++ t ++    +v      +++++ +d     +dav++a+G +s 
  EGE27043.1 108 ASKLVRAWLSRLNGRGVRFYYRHRCTQISG---RVLSFDklDAKAELIDsfcaNYDAVILACGGGSY 171
                 679************************933...333333543333555347766688******9986 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.1
                 E........TEEEEEEEEEC.......TTTHHHHHHHHHHHHH CS
         DAO 323 p........gvkglylatGh.......sghGltlapatGklla 350
                          + +g++ a          +g  lt ++atG+++a
  EGE27043.1 349 AlgndlqliKESGVFCAGEMldwdaptGGYLLTACMATGRAAA 391
                 1333444443456666666566666667777788888888776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.9e-07   0.00031       1      29 [.       7      35 ..       7      62 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.9e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   ++GaG++Gl aA  L+ + ++v+++e+ +
     EGE27043.1  7 VIGAGAAGLMAAEVLSLYPVSVDVYEHKP 35
                   8*************************976 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     3e-06     0.005       3      35 ..       4      36 ..       2      44 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3e-06
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrst 35
                   +++++GaG aGlm+a +Ls + v+v + e   t
     EGE27043.1  4 KIAVIGAGAAGLMAAEVLSLYPVSVDVYEHKPT 36
                   578******************999988776655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   5.7e-05     0.094       1      33 [.       4      36 ..       4      43 .. 0.90
   2 ?    1.2   0.0      0.33   5.5e+02      44      68 ..     113     137 ..     101     144 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.7e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdk 33
                k++v+G+G  gl++A++l+ +  +V v e +++
  EGE27043.1  4 KIAVIGAGAAGLMAAEVLSLYPVSVDVYEHKPT 36
                79*******************999999998876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.33
                 HHHHHHHHHTTEEEECSEEEEEEEE CS
   Pyr_redox  44 kilqeklekngievllntkveeieg 68 
                 +++  +l  +g+++++ ++ ++i g
  EGE27043.1 113 RAWLSRLNGRGVRFYYRHRCTQISG 137
                 5567788888*********999987 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.3e-06     0.014      30      78 ..       4      52 ..       1     166 [. 0.82
   2 ?   -3.3   0.0       2.7   4.5e+03     125     153 ..     335     362 ..     335     367 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.3e-06
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevl 78
                 k+ viG+G aGl A+++ +    +V v++ +p++++++   g++ +++ 
   EGE27043.1  4 KIAVIGAGAAGLMAAEVLSLYPVSVDVYEHKPTAARKILMAGKTGLNIS 52
                 899*******************************999988777766663 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.7
                  EETTGGGT-SBTT--TBBTTSEEEEETTE CS
  AlaDh_PNT_C 125 vDvAidqGGnvetsrltthgepvveekgv 153
                  +D Ai++GG ++ ++l +  + + e  gv
   EGE27043.1 335 IDEAISTGGGIKRIALGNDLQLIKE-SGV 362
                  6889999999996666555444433.555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00015      0.24       2      28 ..       5      31 ..       4      88 .. 0.76
   2 ?    2.0   0.0     0.053        87     142     204 ..     110     171 ..     102     199 .. 0.68
   3 ?   -4.0   0.0       3.4   5.6e+03     394     403 ..     361     370 ..     359     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
                   EEEE--SHHHHHHHHHHHHTTT-EEEE CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavv 28
                   + ViG+G+AGL+AA  ++    +v v 
     EGE27043.1  5 IAVIGAGAAGLMAAEVLSLYPVSVDVY 31
                   67************7666655555555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.053
                    HHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEET.TTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 142 allarlvesarkagvdfqerteadeLivedgrvtGavvenp.esgrevrirak.avvlatgGfgr 204
                    +l+ + + +++ +gv+f+ r++ +++   +grv      +  ++  +  +++  av+la+gG + 
     EGE27043.1 110 KLVRAWLSRLNGRGVRFYYRHRCTQI---SGRVLSFDKLDAkAELIDSFCANYdAVILACGGGSY 171
                    67788888999999999999999999...5555554333222333333555558*******9875 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 3.4
                    TEEE-STCEE CS
  FAD_binding_2 394 GLYAaGevaa 403
                    G ++aGe++ 
     EGE27043.1 361 GVFCAGEMLD 370
                    99*****985 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00018      0.29       1      77 [.       6      90 ..       6     169 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp.............ptfaeWlrerg 77
                   a++GaG++Gl+++e L        p+++++++ +++ a+++  + +    + ++   e+ +    p             ++ + W+++ g
     EGE27043.1  6 AVIGAGAAGLMAAEVLSLY-----PVSVDVYEHKPTAARKILMAGKTGLNISHSEPFETFVDRYTPndwltgylqsfhaDHIVAWMASLG 90
                   89***********999776.....89******9999878877776554444444444443333333656666666666666666666555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015      0.25       1      41 [.       4      44 ..       4      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalek 41
                k+aviGaG  G   a+v+    ++V +++ ++ a++k l +
  EGE27043.1  4 KIAVIGAGAAGLMAAEVLSLYPVSVDVYEHKPTAARKILMA 44
                69******************************999987655 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0012       1.9       1      31 [.       4      34 ..       4      43 .. 0.83
   2 ?    0.7   0.1      0.13   2.1e+02     344     365 ..     348     369 ..     343     399 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0012
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithk 31
                ++ ViG+G AG+ AA  ++   ++v  + hk
  EGE27043.1  4 KIAVIGAGAAGLMAAEVLSLYPVSVDVYEHK 34
                589************9888877777777665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
                 GGB-TTSBBSSSBTEEE-CGGG CS
        GIDA 344 rqllntLetkkvkgLflAGqin 365
                   l n+L++ k +g+f+AG++ 
  EGE27043.1 348 IALGNDLQLIKESGVFCAGEML 369
                 567889*************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3124.99
//
Query:       EGE27044.1  [L=455]
Description: ABC1 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-28   98.7   0.0    4.1e-28   97.9   0.0    1.4  1  ABC1      ABC1 family


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   2.3e-32   4.1e-28      13     119 .]     125     230 ..     112     230 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 2.3e-32
        ABC1  13 efdeePiAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAknaekfrenfakl 110
                 ++d++Pi++AS+aqVh+A+ k sg++V++Kvq+pgv+++i+sDl+++k l+k+++ +++     l++  +e+ + l +E+d++ EA+ +++f++ +a++
  EGE27044.1 125 DIDRTPIGTASLAQVHKAVHKySGQDVVLKVQYPGVADSIDSDLSIFKHLLKITNAVPQTKA--LDAWFEEIGELLHREVDYRLEAETTKRFAHYLADD 221
                 4789*****************9******************************9999999999..*********************************** PP

        ABC1 111 kevkvPkvy 119
                 +++ vP++y
  EGE27044.1 222 ERYIVPTIY 230
                 *******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3425.97
//
Query:       EGE27045.1  [L=423]
Description: phosphoribosylamine--glycine ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-82  274.5   0.3    6.6e-82  274.0   0.3    1.2  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
    1.2e-32  112.5   0.0    2.7e-32  111.4   0.0    1.6  1  GARS_N           Phosphoribosylglycinamide synthetase, N doma
      1e-28   99.4   0.1    2.8e-28   98.0   0.1    1.8  1  GARS_C           Phosphoribosylglycinamide synthetase, C doma
    1.5e-07   31.6   0.0    2.4e-07   30.9   0.0    1.3  1  ATP-grasp_3      ATP-grasp domain
    1.1e-05   25.0   0.2    3.1e-05   23.6   0.2    1.8  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    0.00021   20.9   0.0    0.00041   20.0   0.0    1.4  1  ATP-grasp        ATP-grasp domain
     0.0024   17.5   0.0     0.0052   16.4   0.0    1.5  1  ATP-grasp_2      ATP-grasp domain
  ------ inclusion threshold ------
      0.021   14.3   0.1      0.042   13.3   0.1    1.4  1  ATP-grasp_5      ATP-grasp domain
      0.033   13.4   0.1        1.8    7.7   0.0    2.2  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
      0.037   13.6   0.0       0.29   10.6   0.0    2.0  2  DUF166           Domain of unknown function
      0.053   13.1   0.0      0.084   12.4   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus


Domain annotation for each model (and alignments):
>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.0   0.3     4e-85   6.6e-82       1     194 []     103     296 ..     103     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 274.0 bits;  conditional E-value: 4e-85
                 HBHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEEEE CS
      GARS_A   1 asKsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGeEvsllal 99 
                 +sK+fak++++k+gipta y++ft+ e+ak y++e+++++ V+KadglaagKgviva++e+ a++a++++l+ +kfG+ag++vviE++l+GeE s++++
  EGE27045.1 103 GSKAFAKEFMQKYGIPTAYYQVFTEIEAAKRYVREKGTPI-VIKADGLAAGKGVIVAMDEATAFDAIDDMLDGNKFGDAGSRVVIEQFLSGEEASFICM 200
                 69**************************************.********************************************************** PP

                 ECTTEEEE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---EEEEEEEEEEE.TTEEEEEEEESS--TTCH CS
      GARS_A 100 vdgktvkplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfkGvLyaglmlv.edgpkvlefnvRfgDpet 194
                 +dg+++ p++++qdhkr++egD+g nTGGmGayspapvvt+ +++k+ e++++p+ve +k++g+p++G+Lyaglm+  ++ p+v+efn+RfgDpet
  EGE27045.1 201 IDGENILPMATSQDHKRIFEGDTGANTGGMGAYSPAPVVTQMVHDKVIERVIRPVVEVMKANGTPYTGFLYAGLMIDeHNDPYVIEFNCRFGDPET 296
                 *****************************************************************************5566**************8 PP

>> GARS_N  Phosphoribosylglycinamide synthetase, N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.0   1.6e-35   2.7e-32       1      90 []       1     102 [.       1     102 [. 0.97

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 1.6e-35
                 EEEEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG.............TTHHHHHHHHHHCTESEEEE-SHHHHHTTHHHHHHHHHT-EEES--CCC CS
      GARS_N   1 mkvLvvGsGGRehalawklaqspkvekvyvapgNagt.............edlealvefakeekidlvvvGpeapLvaGvadaleeekgikvfGpskea 86 
                 mk+Lv+G GGRehalaw+ a+++ v+ vyva gNagt             +d++al++f+++++i++vvvGpeapLvaGv+d l+++ gi+v+Gp+k +
  EGE27045.1   1 MKILVLGTGGREHALAWACAKDDAVKIVYVARGNAGTaiepklqnvdldiTDHNALIAFCQTHDIQFVVVGPEAPLVAGVVDDLRQA-GIAVWGPTKYC 98 
                 9******************************************999999988899*****************************777.*********** PP

                 CHHH CS
      GARS_N  87 AqlE 90 
                 AqlE
  EGE27045.1  99 AQLE 102
                 ***9 PP

>> GARS_C  Phosphoribosylglycinamide synthetase, C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.1   1.7e-31   2.8e-28       1      80 []     330     419 ..     330     419 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 1.7e-31
                 EEEEEEEETTTTSS--ST-EEBS.....TTEEEEESSEE.....EEE-SSEEEEEEEEESSHHHHHHHHHHHHTTCB-TTEE--STTTHH CS
      GARS_C   1 avgvvlaskGYPgsyekgkeitg.....egvkvfhagtk.....lvtsGGRvlavvavgetleeArakayeavkkikfeglfyRkDIGar 80 
                 a+gvvlas+GYP+s  kg+ itg     ++ k+fhagtk     +vt+GGRvl+v+a++++++ A++ a +a+++i f+g++yR+DIG+r
  EGE27045.1 330 ALGVVLASRGYPESSIKGDIITGldtqtDRLKIFHAGTKqsgdaIVTDGGRVLCVTALADDIQTAQKDALAAIERIYFDGMQYRRDIGWR 419
                 689***********************998889*******9***9********************************************86 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.5e-10   2.4e-07      15     159 ..     116     292 ..     103     294 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.5e-10
                  .S---...........-EESS--SSSEEEEESS-------B--SS--TTE...................EEEE---SEEEEEEEEE.SSSEEEEEEEE CS
  ATP-grasp_3  15 gvkvP.......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieGkplSvsllsdgekvlvlavnr 93 
                  g+++         ++ +  ++e+  ++v+K    a+g++v v++++ +a+ ai+ +             ++ +f++G+++S  ++ dge++l++a+++
   EGE27045.1 116 GIPTAyyqvfteIEAAKRYVREKGTPIVIKADGLAAGKGVIVAMDEATAFDAIDDMLdgnkfgdagsrvVIEQFLSGEEASFICMIDGENILPMATSQ 213
                  444435555522222233456668999***99999***********999999998778999***********************************98 PP

                  EEEET........TEEEEEEES----H....HHHHHHHHHHHHTTST....T--EEEEEEEEESS..SEEEEEEESS-- CS
  ATP-grasp_3  94 qliekaeke....fvyaGnvtpietel....keevvelaeevvekle....glaGyvGvDlvlkd.eepyviEvNPRlt 159
                   +    e +        G  +p+++      ++ ++++++ vve ++    +  G++   l++ + ++pyviE N R+ 
   EGE27045.1 214 DHKRIFEGDtganTGGMGAYSPAPVVTqmvhDKVIERVIRPVVEVMKangtPYTGFLYAGLMIDEhNDPYVIEFNCRFG 292
                  8765433335566444444455544442231555556666677777565445556666677888899**********95 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.2   1.9e-08   3.1e-05       3     147 ..     106     253 ..     104     294 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.9e-08
                  HHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEE CS
  CPSase_L_D2   3 esakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevl 100
                    ake ++k ++p++  +    +++e a + ++e g P++ika     GkG  va +e++  +++   l+  k   + ++v +e++l+g  e  +  +
   EGE27045.1 106 AFAKEFMQKYGIPTAYYQVF--TEIEAAKRYVREKGTPIVIKADGLAAGKGVIVAMDEATAFDAIDDMLDGNKFGDAGSRVVIEQFLSGE-EASFICM 200
                  5689999****999987777..9***********************************************9975555689*******985.4445555 PP

                  EETTS-EEEEEEEEECCEC.......TCCCCEEEES-SS--HHHHHHHHHHHHH CS
  CPSase_L_D2 101 rDakgnvitvcerenslql.......rtqkvievAPsqtLtdeerqalreaavk 147
                   D ++   + ++ +    +        t+ +    P++++t+  ++++ e+ ++
   EGE27045.1 201 IDGENILPMATSQDH-KRIfegdtgaNTGGMGAYSPAPVVTQMVHDKVIERVIR 253
                  555433333333332.22223344445555555666666666666555555555 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.5e-07   0.00041       2      73 ..     113     191 ..     112     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.5e-07
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE--- CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvp 73 
                 +k g+p++ +++ ++ e++++ ++e g p+v+K + +   GkG  v  +e+++ +a++ +        ++ +v++E+f +
  EGE27045.1 113 QKYGIPTAYYQVFTEIEAAKRYVREKGTPIVIK-ADGLAAGKGVIVAMDEATAFDAIDDMldgnkfgdAGSRVVIEQFLS 191
                 789******************************.566668*************999999889999998888999999976 PP

>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.2e-06    0.0052       7      78 ..     108     174 ..     106     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.2e-06
                  HHHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTS CS
  ATP-grasp_2   7 akeilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKagGvklvkskeeakeaakellgk 78 
                  ake ++kyg++++  +v ++ e a++ +++  ++ +v+Ka  la G+    Gv ++ ++  a +a++++l  
   EGE27045.1 108 AKEFMQKYGIPTAYYQVFTEIEAAKRYVREK-GTPIVIKADGLAAGK----GVIVAMDEATAFDAIDDMLDG 174
                  89****************************5.5566*****999876....588888888888888888865 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.6e-05     0.042      15      53 ..     108     146 ..     102     151 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
  ATP-grasp_5  15 akelleaygipvvetrlassaeeaveaaeeigypvvlKi 53 
                  ake ++ ygip++  ++ ++ e+a ++++e g p+v+K 
   EGE27045.1 108 AKEFMQKYGIPTAYYQVFTEIEAAKRYVREKGTPIVIKA 146
                  899***********************************7 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0011       1.8      22      82 ..     105     161 ..      95     185 .. 0.81
   2 ?    3.5   0.0     0.022        36     234     267 ..     260     292 ..     237     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
  ATPgrasp_ST  22 KlkfkelalraglkvpkllgvikeqaeiseleafvkeleegvviKpakgsgGkGilviter 82 
                  K   ke++++ g+++   ++v+    ei++++ +v+e  + +viK+    +GkG++v++++
   EGE27045.1 105 KAFAKEFMQKYGIPTAY-YQVF---TEIEAAKRYVREKGTPIVIKADGLAAGKGVIVAMDE 161
                  66677777777777766.4444...79999*******9888****************9874 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.022
  ATPgrasp_ST 234 kaaeklpglgylGwDivldeekgplllElNarpg 267
                  ka   +p+ g l   + +de+++p+++E N r g
   EGE27045.1 260 KANG-TPYTGFLYAGLMIDEHNDPYVIEFNCRFG 292
                  4444.78888888899**************8854 PP

>> DUF166  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018      0.29      69     136 ..      55     119 ..      39     135 .. 0.88
   2 ?    0.2   0.0      0.28   4.6e+02     117     136 ..     276     295 ..     274     301 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
      DUF166  69 elaekakekkvkalivpaeapkaglrkelkekleelgievavpkpfCsleeegkpkideFleefGkPe 136
                 +l+  ++ +++++++v+ eap      ++ + l ++gi+v  p+  C+  e +k+  +eF+++ G P 
  EGE27045.1  55 ALIAFCQTHDIQFVVVGPEAPL---VAGVVDDLRQAGIAVWGPTKYCAQLEGSKAFAKEFMQKYGIPT 119
                 5777788899*********888...999999999**************9999*************996 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.28
      DUF166 117 leeegkpkideFleefGkPe 136
                 ++e+++p++ eF  +fG Pe
  EGE27045.1 276 IDEHNDPYVIEFNCRFGDPE 295
                 57899**************9 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.2e-05     0.084       1     117 [.     111     225 ..     111     296 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.2e-05
                      HHHHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEE....SSSSTTTTEEEESSGGGHHHHHHHHH..TT-SCEEEEE--ESEEEEE CS
  Dala_Dala_lig_C   1 llkaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKp....areGSSvGvskveseeelkeaieeaf..kydekvlvEeaiegreiev 88 
                      ++++ G+p++ y+v+++ ea +         + e g p+++K+    a +G  v + ++++ + + ++++        ++v++E++++g+e   
       EGE27045.1 111 FMQKYGIPTAYYQVFTEIEAAKRY-------VREKGTPIVIKAdglaAGKGVIVAMDEATAFDAIDDMLDGNKfgDAGSRVVIEQFLSGEEASF 197
                      58999**********998887777.......8899*******64433777888888888888888888875541155579**********9875 PP

                      EEEETSSCEEEEEEEEE-SSSSS-HHHHH CS
  Dala_Dala_lig_C  89 avlgneklevsevgeivvkkgfydyeaky 117
                        +  +  +++++   + +k +++ ++  
       EGE27045.1 198 ICMI-DGENILPMATSQDHKRIFEGDTGA 225
                      5554.335566666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3256.89
//
Query:       EGE27046.1  [L=210]
Description: fumarylacetoacetate hydrolase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-35  120.6   0.0    9.7e-35  120.2   0.0    1.0  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0   5.4e-39   9.7e-35       1     207 [.      16     200 ..      16     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 5.4e-39
                    .EEEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE- CS
  FAA_hydrolase   1 kivcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrevlsveeAedaiaGytllnDvsa 96 
                    +i+c+g++yaeh+ e+g   ++p       ep +flk++++l++++ ++r+P  se +++EvEL+v+i +++ +  ++ +   +iaGy +++D++a
     EGE27046.1  16 NIYCIGRSYAEHISELG---NTPTG-----EPLVFLKPTTALTTDN-TLRLPGYSEDIHHEVELVVYIDQDVADD-QIPD-LSCIAGYGIGLDLTA 100
                    69**************8...34533.....555**********965.8**********************88888.4444.78************* PP

                    SBGGG---..HHHHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES....... CS
  FAA_hydrolase  97 Rdlqaeek.aplgwflgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvgaee 191
                    Rd+q + k + ++w+++k+f++++ ++      + +  p   +l+l vng+ +qd +t++++f++ +++  l + ++L+ Gd+i tGTp+gvg  +
     EGE27046.1 101 RDIQNALKtKGMPWTTAKGFRHAAWLSVLT---KGI--PTTHQLSLMVNGDIRQDDSTDKLLFDITYQLNFLHEKFGLRQGDIIYTGTPKGVG--R 189
                    ********7777********9999999876...445..457899***********************************************98..3 PP

                    S--EE--TT-EEEEEE CS
  FAA_hydrolase 192 eslkflkdgDevevei 207
                         l  gD++++++
     EGE27046.1 190 -----LVSGDTLVAKL 200
                    .....77888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1773.52
//
Query:       EGE27047.1  [L=329]
Description: putative hydrolase EstB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-24   87.3   0.0    1.4e-16   61.0   0.0    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    2.4e-13   49.9   0.0    3.2e-12   46.2   0.0    2.1  1  Hydrolase_4    Serine aminopeptidase, S33
    1.2e-11   45.6   0.0    1.6e-11   45.3   0.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    2.3e-05   24.6   0.0    3.7e-05   24.0   0.0    1.2  1  Thioesterase   Thioesterase domain
    0.00063   19.5   0.1     0.0028   17.3   0.1    1.9  1  FSH1           Serine hydrolase (FSH1)
      0.001   19.0   0.0     0.0093   15.8   0.0    2.4  1  Palm_thioest   Palmitoyl protein thioesterase
     0.0028   17.5   0.0        1.2    8.9   0.0    2.2  2  Abhydrolase_5  Alpha/beta hydrolase family
     0.0041   16.9   0.0     0.0078   16.0   0.0    1.4  1  PGAP1          PGAP1-like protein
  ------ inclusion threshold ------
      0.019   14.4   0.0        2.5    7.5   0.0    2.2  2  Peptidase_S9   Prolyl oligopeptidase family
      0.023   14.7   0.0      0.037   14.0   0.0    1.2  1  Med25          Mediator complex subunit 25 PTOV activation an
      0.029   14.2   0.0         15    5.3   0.0    3.0  3  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.034   13.8   0.0      0.048   13.3   0.0    1.2  1  Esterase       Putative esterase
      0.035   13.7   0.0       0.23   11.0   0.0    2.0  2  LIDHydrolase   Lipid-droplet associated hydrolase
       0.05   12.3   0.0       0.08   11.6   0.0    1.2  1  Ndr            Ndr family
      0.082   12.8   0.0       0.29   11.0   0.0    1.8  2  UPF0227        Uncharacterised protein family (UPF0227)
      0.098   11.7   0.0       0.21   10.7   0.0    1.5  2  DUF2048        Abhydrolase domain containing 18
       0.11   11.6   0.1       0.35   10.0   0.0    1.7  2  DUF2920        Protein of unknown function (DUF2920)
       0.17   12.0   0.0        0.3   11.2   0.0    1.3  1  Abhydrolase_4  TAP-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.4e-19   1.4e-16       1     124 [.      54     198 ..      54     204 .. 0.89
   2 !   24.4   0.0     2e-08     2e-05     200     251 ..     261     310 ..     230     312 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.4e-19
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.........................CHHSHHHHHHHHHHHHHHCTT CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin........................ddygtasvaddldrildalgd 72 
                    p+++++ Gl+     w  ++l + ++  gf+vi +D r  g Ss+    i+                        + y++ ++a+d  r+     +
     EGE27047.1  54 PPMIFITGLGSQMMFWSDQFLKRFIDA-GFFVIRFDNRDTGLSSKIQ--IDglprlntfkmmlkmqaglsnrsepVAYTLTDMAEDAARLIKTMQL 146
                    799********9999*******99998.***************9887..44558998999999999999999999999****************** PP

                    SSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHH CS
  Abhydrolase_1  73 dkltlvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksf 124
                    ++++l+G SmGGmia  +aa+yp+++k+lvll + ++ a l+  ++ q ++f
     EGE27047.1 147 HNVNLIGASMGGMIAQIVAARYPKYIKNLVLLFSTSNRAFLRPPNPKQFMTF 198
                    *******************************988666666666666665555 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 2e-08
                    HHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSS CS
  Abhydrolase_1 200 lllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHl 251
                    ++lr+   k++ a+tlvi+g++D+lv p+++ +la+ +p++r v +++ gH+
     EGE27047.1 261 SILRF--TKQIRANTLVIHGNKDGLVAPSHGKFLAKVIPNARFVLVDGMGHD 310
                    33344..458889**************************************8 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   3.2e-15   3.2e-12       9     235 ..      58     312 ..      51     313 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 3.2e-15
  Hydrolase_4   9 lvHGlaehsgryae.laeaLaaqGfavyalDhrGhGrse.....................gkrghvpsfddyvdDlaafvekvkeehpelplfllGhS 84 
                  ++ Gl++ +   ++ + +++ ++Gf v+ +D+r  G s                      g   + +++   ++D+a+   ++ ++ +  ++ l+G S
   EGE27047.1  58 FITGLGSQMMFWSDqFLKRFIDAGFFVIRFDNRDTGLSSkiqidglprlntfkmmlkmqaGLSNRSEPVAYTLTDMAEDAARLIKTMQLHNVNLIGAS 155
                  5566666665544449********************************************8888889999999999888888888888899******* PP

  Hydrolase_4  85 mGGliallyllrypdkvaglil.saPalkikaklk.appllklllkllgkllpklqv.......snnlkadslsrdpevvaayeadplvhgkitvrll 173
                  mGG+ia+ +++ryp+ ++ l+l +++  +   + + +++++ ++++  ++  +++           ++  +   + ++ +a+ +     h        
   EGE27047.1 156 MGGMIAQIVAARYPKYIKNLVLlFSTSNRAFLRPPnPKQFMTFVRRPESHSERDMVRhsvwfmtAVGSPGHLDIKGTRAIAEKRYQRNFHPLGVS-QQ 252
                  ******************76652565555444434466666665554444433333366677774444444444555555555555555544444.44 PP

  Hydrolase_4 174 lelldamkrleeraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHell 235
                  l+++ a  ++++ +++i++ +l++hG +D +v p+  + l++ ++  + ++ l +g+ H+l 
   EGE27047.1 253 LTAILASGSILRFTKQIRANTLVIHGNKDGLVAPSHGKFLAKVIP--NARFVLVDGMGHDLP 312
                  4455667789999999*********************99999999..7***********985 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.6e-14   1.6e-11       2     210 ..      57     313 ..      56     319 .. 0.73

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 1.6e-14
                    EEE--GC.....G..CHHHHHHHHCCTCEEEEE--TTST............................S-GGCS--HHH.CHHHHHHHCCTT..TTS CS
  Abhydrolase_6   2 lllHGagssassW..lvapLaallaagvhvlapDlpGhG............................rsdpppldled.ladlaalldelaagggp 66 
                    +++ G+gs    W  +  +L ++  ag+ v+ +D + +G                            rs+p +++l+d ++d a+l+       ++
     EGE27047.1  57 IFITGLGSQMMFWsdQ--FLKRFIDAGFFVIRFDNRDTGlsskiqidglprlntfkmmlkmqaglsnRSEPVAYTLTDmAEDAARLIKTMQ--LHN 148
                    7899999998999433..777777888999*********999****99999999999999999999999*******995566688888885..*** PP

                    EEEEEETCHHHHHHH.HHHCC..EE..EEES-....----TTTS----TTHHHHHH.....TT-CCCCHCCH..S-HSCCCCHHH..CCCCHCHCC CS
  Abhydrolase_6  67 vvlvGHSlGGalala.aaplalvvg..vlldppp..talpagllaaalelllalla.....llrllawlsre..plprlfladed..adaawrarl 148
                    v l+G S+GG++a+  aa+++  ++  vll +++   +l+++++  ++++++++ +       r+  w++++  ++++l ++++   a+ ++++++
     EGE27047.1 149 VNLIGASMGGMIAQIvAARYPKYIKnlVLLFSTSnrAFLRPPNPKQFMTFVRRPEShserdMVRHSVWFMTAvgSPGHLDIKGTRaiAEKRYQRNF 244
                    ***************666666444456777774444455555566666666666666554444448999776665554555555533368888888 PP

                    CGHH...HHCCHHCHTT.CCHHTT-TTGCEEE.CTT-CHHHHCHHCCCH..STTEEETCE...SSS.-HH CS
  Abhydrolase_6 149 arla...allaglgllp.aaawadlpvpllvl.ggeDplvprllerlla..qagarlpvvlpgaGH.lph 210
                     +l    +l+a l   + ++  +++++ +lv+ g +D lv++   ++la  ++ ar+ v++ g GH lp+
     EGE27047.1 245 HPLGvsqQLTAILASGSiLRFTKQIRANTLVIhGNKDGLVAPSHGKFLAkvIPNARF-VLVDGMGHdLPN 313
                    88884433333333222244555555555777679999***9999****999*****.********7554 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   3.7e-08   3.7e-05      30      87 ..     112     168 ..     104     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 3.7e-08
                   EEEECSTTSTSHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHH CS
  Thioesterase  30 vlavqlpgrerdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqL 87 
                   +l +q+   +r+ep + +++++a+  a  +++ q +  ++l+G S+Gg++A+ vA+++
    EGE27047.1 112 MLKMQAGLSNRSEPVAYTLTDMAEDAARLIKTMQLH-NVNLIGASMGGMIAQIVAARY 168
                   566677777799************************.9*****************986 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.8e-06    0.0028     153     204 ..     255     313 ..     121     316 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.8e-06
        FSH1 153 e........yyeedkiqtptLhvlGelDtvvdeerseaLaeafknsskvlkHpggHfvPn 204
                 +         + +++i+  tL ++G++D +v+++  + La+++ n + vl    gH +Pn
  EGE27047.1 255 AilasgsilRF-TKQIRANTLVIHGNKDGLVAPSHGKFLAKVIPNARFVLVDGMGHDLPN 313
                 03333333345.7889*****************************777777778*****8 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.3e-06    0.0093      38     104 ..     120     183 ..     104     300 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.3e-06
  Palm_thioest  38 seaedrkasffgnlndqveavckklelangfhaiGfSQGglflRaliercddkknvrnlislggpqa 104
                   s++++  a  ++++ + ++  +k   + +++++iG S Gg+++  ++ r+ +k  ++nl+ l +  +
    EGE27047.1 120 SNRSEPVAYTLTDMAEDAARLIKTM-QLHNVNLIGASMGGMIAQIVAARY-PKY-IKNLVLLFSTSN 183
                   4445556667778888888887873.4588********************.454.*****9988766 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0012       1.2      45      89 ..     136     180 ..     124     191 .. 0.80
   2 !    6.4   0.0     0.007         7      97     140 ..     267     309 ..     254     315 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
  Abhydrolase_5  45 kaeeiikeapklekfvvgGhslGGvvasrfaaee.ekiegvvflas 89 
                     a+ +ik + +l++  + G s+GG++a  +aa+  + i+ +v+l s
     EGE27047.1 136 DAARLIK-TMQLHNVNLIGASMGGMIAQIVAARYpKYIKNLVLLFS 180
                    4556666.4458899999***********999885799*9999976 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.007
  Abhydrolase_5  97 selskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgnh 140
                    ++   ++l i g++Dg++  ++ +  +k +p ++++v ++G  h
     EGE27047.1 267 KQIRANTLVIHGNKDGLVAPSHGKFLAKVIP-NARFVLVDGMGH 309
                    5667789*************99999998888.79*******998 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.8e-06    0.0078      89     119 ..     145     176 ..     127     194 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.8e-06
       PGAP1  89 eptsviliGHSmGGivaraa.ltlknyikqsv 119
                 + ++v liG SmGG++a+ + + +++yik+ v
  EGE27047.1 145 QLHNVNLIGASMGGMIAQIVaARYPKYIKNLV 176
                 5789*************976156888888766 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.019        19      60      87 ..     143     170 ..     122     179 .. 0.76
   2 ?    7.5   0.0    0.0025       2.5      89     166 ..     217     293 ..     210     309 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.019
                   S--GGGEEEEEETHHHHHHHHHHHH-GG CS
  Peptidase_S9  60 yvdserlaitGgSyGGyltgaalnqrpd 87 
                    ++  ++ + G+S GG+ +  ++++ p+
    EGE27047.1 143 TMQLHNVNLIGASMGGMIAQIVAARYPK 170
                   677789999*********9999987776 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0025
                   -SEEEEESE---CCCHHCSTTS.THHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHH CS
  Peptidase_S9  89 Fkaavaevpvvdvlrydsdtdl.lteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklv 166
                   F  av + + +d   +    +  +++++   g +++  +   +  ++   ++ ++ +++L+ihG +D  v p+++  l+
    EGE27047.1 217 FMTAVGSPGHLDIKGTRAIAEKrYQRNFHPLGVSQQLTAIL-ASGSILRFTK-QIRANTLVIHGNKDGLVAPSHGKFLA 293
                   66666666667777777765555555555555553333333.3333333222.3999****************986554 PP

>> Med25  Mediator complex subunit 25 PTOV activation and synapsin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.7e-05     0.037      60     143 ..     110     200 ..     103     204 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-05
       Med25  60 qllnalkeallknsrvvvfnftakdlealksLakvmsng........fagcvhf..ssspqceikvllllysekkraflGliPndqeafvkklr 143
                 +++ +++  l + s+ v++ +t   +e +  L k+m+          + g++     +  +  ik l+ll+s+ +rafl   P ++++f++ +r
  EGE27047.1 110 KMMLKMQAGLSNRSEPVAYTLTDM-AEDAARLIKTMQLHnvnligasMGGMIAQivAARYPKYIKNLVLLFSTSNRAFL--RPPNPKQFMTFVR 200
                 67778888999**********988.78888999999655456666655666654567888899***************7..4888888887665 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.015        15       5      34 ..      44      73 ..      42      80 .. 0.90
   2 ?    3.6   0.0     0.051        51     102     132 ..     144     174 ..     110     212 .. 0.79
   3 ?    1.5   0.0      0.22   2.2e+02     159     201 ..     273     311 ..     247     316 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.015
                   EEE--SS---EEEEEE--TT--SHHHHHHH CS
  Abhydrolase_2  5 evvspkdkaqavviflHGlGdsghawaeaa 34
                    v+++++++++ +if+ GlG++   w++++
     EGE27047.1 44 CVEAGGNPEHPPMIFITGLGSQMMFWSDQF 73
                   58999*****************99999876 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.051
                    --GGGEEEEEETHHHHHHHHHHHT-SS--SE CS
  Abhydrolase_2 102 ipssriiigGFSqGaalalylaltlpkklgg 132
                    ++  ++ ++G S+G+++a   a  +pk ++ 
     EGE27047.1 144 MQLHNVNLIGASMGGMIAQIVAARYPKYIKN 174
                    6667899***********9999888885554 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.22
                    EEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS- CS
  Abhydrolase_2 159 ilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHsi 201
                     l iHg++D +v  ++gk    +l k++ +  ++ + g++H  
     EGE27047.1 273 TLVIHGNKDGLVAPSHGK----FLAKVIPNARFVLVDGMGHDL 311
                    467999999999999986....555666667778888888866 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.8e-05     0.048     117     147 ..     149     180 ..     124     225 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.8e-05
                 EEEEEETHHHHHHHHHHHCSTTTCCE.EEEES CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgs.vssfS 147
                   ++G+SmGG++A i+a+++p+  ++ v+ fS
  EGE27047.1 149 VNLIGASMGGMIAQIVAARYPKYIKNlVLLFS 180
                 579******************97664255555 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00023      0.23      72     123 ..     141     184 ..     111     221 .. 0.78
   2 ?    0.4   0.0       0.4     4e+02     221     263 ..     269     309 ..     211     311 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
  LIDHydrolase  72 lkellekaksekdvklilvGHSvGaYialevlkrlsersikkvvlLfPtied 123
                   +k+        +  ++ l+G S G  ia+ v+ r+++  ik++vlLf t  +
    EGE27047.1 141 IKT-------MQLHNVNLIGASMGGMIAQIVAARYPKY-IKNLVLLFSTSNR 184
                   433.......3567899********************8.********99765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.4
  LIDHydrolase 221 nkekalvfyfgkkDhWvpeetrdelkellgeeklevdekgipH 263
                     ++  +++ g+kD+ v+ ++ + l + ++++++++ ++g+ H
    EGE27047.1 269 IRAN-TLVIHGNKDGLVAPSHGKFLAKVIPNARFVL-VDGMGH 309
                   3344.678899************9999999999988.666666 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     8e-05      0.08      80     136 ..     128     184 ..     118     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8e-05
                 --HHHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S- CS
         Ndr  80 pslddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitska 136
                  +l d+a++   +++ ++l++v  +G+  G  i    a+++p+ ++ lvL+  ts+ 
  EGE27047.1 128 YTLTDMAEDAARLIKTMQLHNVNLIGASMGGMIAQIVAARYPKYIKNLVLLFSTSNR 184
                 5899**********************************************9888875 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0003      0.29      45      80 ..     133     168 ..     113     178 .. 0.84
   2 ?   -1.5   0.0         2     2e+03     128     165 ..     264     303 ..     248     317 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0003
     UPF0227  45 alkeleklvaelgddnillvGssLGGyyatrlgerf 80 
                 +++   +l++ ++ +n+ l+G s+GG  a+ +++r+
  EGE27047.1 133 MAEDAARLIKTMQLHNVNLIGASMGGMIAQIVAARY 168
                 45566778888888899***************9998 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2
     UPF0227 128 lsrlkrperilvllskqDevldy..rravaefraaaeive 165
                  ++ + + ++lv+++ +D  +     + +a+  + a  v 
  EGE27047.1 264 RFTKQIRANTLVIHGNKDGLVAPshGKFLAKVIPNARFVL 303
                 5566778899999999998654323344455555555554 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00021      0.21     178     210 ..     149     182 ..     132     187 .. 0.80
   2 ?   -3.2   0.0       3.5   3.5e+03     297     331 ..     274     309 ..     267     309 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
     DUF2048 178 lgltGlSmGGhmaslaasnwpkplvlvpcl.sws 210
                 + l G SmGG+ a+++a+ +pk +  + +l s s
  EGE27047.1 149 VNLIGASMGGMIAQIVAARYPKYIKNLVLLfSTS 182
                 5688******************998554441444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.5
     DUF2048 297 ivvaAkdDayvpresvaslqeiwpgsevryldg.GH 331
                  v+  ++D+ v  +  + l ++ p++    +dg GH
  EGE27047.1 274 LVIHGNKDGLVAPSHGKFLAKVIPNARFVLVDGmGH 309
                 567788899998888899999999999999999888 PP

>> DUF2920  Protein of unknown function (DUF2920)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00035      0.35     174     208 ..     141     175 ..     127     189 .. 0.79
   2 ?   -1.4   0.0         1     1e+03     187     207 ..     286     306 ..     235     322 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00035
     DUF2920 174 fpkeadlpviliGgsyGGYlalLiaKiaPwyvdgv 208
                   + + ++v liG+s GG +a+++a   P+y++ +
  EGE27047.1 141 IKTMQLHNVNLIGASMGGMIAQIVAARYPKYIKNL 175
                 4444557899*********************9875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
     DUF2920 187 gsyGGYlalLiaKiaPwyvdg 207
                  s+G +la++i   +  +vdg
  EGE27047.1 286 PSHGKFLAKVIPNARFVLVDG 306
                 455555555554444444444 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0003       0.3      34      74 ..     270     310 ..     258     315 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0003
  Abhydrolase_4  34 aapvLllqnerDpaTPyegakklakalggavlvtvegeGHg 74 
                     a++L++ ++ D  + ++ +k lak +++a+ v v+g GH+
     EGE27047.1 270 RANTLVIHGNKDGLVAPSHGKFLAKVIPNARFVLVDGMGHD 310
                    5799************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 2686.56
//
Query:       EGE27048.1  [L=54]
Description: rubredoxin reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-23   82.6   5.9    1.6e-23   82.5   5.9    1.0  1  Rubredoxin      Rubredoxin
  ------ inclusion threshold ------
      0.049   13.7   5.1      0.092   12.9   5.1    1.5  1  PHD_4           PHD-finger
      0.055   12.8   2.9       0.21   11.0   0.4    2.2  2  zf-RanBP        Zn-finger in Ran binding protein and others
      0.056   13.2   2.7       0.36   10.6   0.0    2.1  2  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
       0.29   10.6   3.9          2    7.9   0.4    2.3  2  zf-ribbon_3     zinc-ribbon domain
       0.62    9.8   6.7        6.3    6.6   0.6    2.3  2  Rubredoxin_2    Rubredoxin metal binding domain


Domain annotation for each model (and alignments):
>> Rubredoxin  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   5.9   5.3e-27   1.6e-23       1      47 []       3      49 ..       3      49 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 5.3e-27
                EEEETTT-BEEETTTBBGGGTB-TT--GGGS-TT-BBTTTB-BGGGE CS
  Rubredoxin  1 kyeCkvCgyvYdpakGdpdegiapgTkFedlPddWvCPdCgvekeqF 47
                ky+C vCg++Yd+a G p+eg+apgT++ed+PddW CP+Cgv+ke+F
  EGE27048.1  3 KYQCIVCGWIYDEALGCPEEGLAPGTRWEDVPDDWLCPECGVGKEDF 49
                7********************************************99 PP

>> PHD_4  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.1   3.1e-05     0.092      32      67 ..       5      42 ..       1      43 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.1e-05
       PHD_4 32 eCsvCyeivHp..eClkekegegvvnedlpnsWeCpkC 67
                +C vC  i      C +e  ++g+  ed+p +W Cp+C
  EGE27048.1  5 QCIVCGWIYDEalGCPEEGLAPGTRWEDVPDDWLCPEC 42
                799998887762369999999***************** PP

>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.043   1.3e+02       6      11 ..       5      10 ..       5      12 .. 0.78
   2 ?   11.0   0.4   6.9e-05      0.21       3      12 ..      35      44 ..      33      44 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.043
                E-SSS- CS
    zf-RanBP  6 dCskCl 11
                +C++C+
  EGE27048.1  5 QCIVCG 10
                788886 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 6.9e-05
                SSEE-SSS-- CS
    zf-RanBP  3 gdWdCskClv 12
                +dW C+ C+v
  EGE27048.1 35 DDWLCPECGV 44
                79******97 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.7     0.034     1e+02      44      51 ..       3      10 ..       1      13 [. 0.86
   2 ?   10.6   0.0   0.00012      0.36      33      52 ..      23      44 ..      19      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.034
  zinc_ribbon_10 44 kyrCpkCg 51
                    ky+C  Cg
      EGE27048.1  3 KYQCIVCG 10
                    7******9 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
  zinc_ribbon_10 33 Glapkeeleev..kyrCpkCga 52
                    Glap  ++e+v   + Cp+Cg+
      EGE27048.1 23 GLAPGTRWEDVpdDWLCPECGV 44
                    99999999999889******95 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.011        34       2      20 ..       3      20 ..       2      21 .. 0.75
   2 ?    7.9   0.4   0.00068         2      14      23 ..      34      43 ..      34      45 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.011
  zf-ribbon_3  2 tvrCPnCGaplssddnvCp 20
                 +++C  CG++  +++  Cp
   EGE27048.1  3 KYQCIVCGWI-YDEALGCP 20
                 578999***8.67776666 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00068
  zf-ribbon_3 14 sddnvCpyCG 23
                 +dd  Cp CG
   EGE27048.1 34 PDDWLCPECG 43
                 5777899998 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.8    0.0022       6.5       1      15 [.       4      18 ..       4      21 .. 0.85
   2 ?    6.6   0.6    0.0021       6.3      15      21 ..      37      43 ..      37      44 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0022
  Rubredoxin_2  1 YvCsqCGfesakwfG 15
                  Y+C  CG+ +   +G
    EGE27048.1  4 YQCIVCGWIYDEALG 18
                  9*******9887777 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0021
  Rubredoxin_2 15 GrCpsCg 21
                  + Cp+Cg
    EGE27048.1 37 WLCPECG 43
                  99****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 472.61
//
Query:       EGE27049.1  [L=370]
Description: bifuctional prephenate dehydratase/chorismate mutase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-62  208.8   0.1    8.3e-62  208.3   0.1    1.2  1  PDT       Prephenate dehydratase
    2.2e-23   82.4   1.0    5.3e-23   81.2   1.0    1.6  2  CM_2      Chorismate mutase type II
    3.3e-09   36.4   0.0    6.9e-09   35.3   0.0    1.6  1  ACT       ACT domain
  ------ inclusion threshold ------
       0.12   12.6   0.4       0.69   10.1   0.0    2.0  2  GTSE1_N   G-2 and S-phase expressed 1
       0.31   10.7   1.9        1.8    8.2   0.0    2.7  3  MtrA      Tetrahydromethanopterin S-methyltransferase, subuni


Domain annotation for each model (and alignments):
>> PDT  Prephenate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.3   0.1   2.3e-65   8.3e-62       1     182 [.     102     279 ..     102     280 .. 0.98

  Alignments for each domain:
  == domain 1  score: 208.3 bits;  conditional E-value: 2.3e-65
                 EEEES-TTSHHHHHHCCCS.....EEEEES-HHHHHHHHCTTS-SEEEEEEEESSS-B-HHHHHHHHH.SSEEEEEEEEEE---EEEE-TT--TTT--E CS
         PDT   1 vaylGpegtyshqAalkvfkaedvelipvasieevfeavekgeadyavvPiENsteGsVnetlDlLlkesdlkivgEvvlpiehcLlakpktkleeikk 99 
                 va+lGp gt++h Aalk+f ++ +++++ ++i++vf++ve g+a y+vvP+ENs eG Vn+tlD +l+ s+lki+gEv lpi+h++l+ ++t++e+ ++
  EGE27049.1 102 VAFLGPVGTFTHAAALKHF-GKAATTVSLTTITDVFREVEAGSAMYGVVPVENSSEGVVNHTLDAFLS-SSLKIIGEVELPIHHNFLVAEHTRVESLSR 198
                 89*****************.************************************************.99**************************** PP

                 EEE-HHHHHHTHHHHHH-.TTSEEEE-S-HHHHHHHHHHCT-TTEEEEE-HHHHHHTT-EEEECS-SS-S--EEEEEEEEETT CS
         PDT 100 vyShpqalgQcrkfLeehlpqvervavestaeAakkveassdkdaaaiasevaaelyglkvleeniedkknntTRFlvlakee 182
                 +ySh+qal+Qcr++L+ ++p+vervav+s++eAa++   +++   aaia  va+  ygl+ l enied++ ntTRFl++++e+
  EGE27049.1 199 IYSHQQALAQCRHWLDVNFPNVERVAVSSNGEAARR--LQNEWHSAAIAGDVAVAEYGLHKLYENIEDNPGNTTRFLIIGRED 279
                 ************************************..7778889***********************************985 PP

>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   1.0   1.5e-26   5.3e-23       1      75 []      19      98 ..      19      98 .. 0.95
   2 ?   -4.0   0.0         5   1.8e+04      56      66 ..     129     139 ..     117     143 .. 0.69

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1.5e-26
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS.G.SS-HHHHHHHHHHHHH...HHS-HHHHHHHHHHHHHHHHHHHH CS
        CM_2  1 RkeIdeiDdeileLLaeRaelakevgeyKkeegl.p.vydpeReaevlerlee...galdeeaierifreiisasralqk 75
                R++Id+iD++i  L++eRa++a++v+ +Kk++++ p +y+peRea+vl+ +++   g+l+ e ++r+frei+s +++l++
  EGE27049.1 19 RTQIDAIDEKIQTLINERAKVAQQVAVAKKNHENhPiFYRPEREAQVLKSVMArneGPLSGEKMARLFREIMSVCLELEE 98
                99***************************988886689***************98888*******************995 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5
                 HHHHHHHHHHH CS
        CM_2  56 eeaierifrei 66 
                   +i+++fre+
  EGE27049.1 129 LTTITDVFREV 139
                 55677888876 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.9e-12   6.9e-09       1      65 [.     288     352 ..     288     354 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.9e-12
                 EEEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTT CS
         ACT   1 tvlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkl 65 
                 t++ v+ pD+ G+L +++  l ++g++ +sie+r+ +++ + +vf+++  ++ ++++v +a++++
  EGE27049.1 288 TSIMVSSPDKAGALIEILEPLRRHGVSMTSIETRPERPNKWAYVFFIDMNGHIEDKHVAAAIEDI 352
                 57899*********************************************************987 PP

>> GTSE1_N  G-2 and S-phase expressed 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.2      0.25   9.1e+02      70      96 ..      27      53 ..      22      69 .. 0.82
   2 ?   10.1   0.0   0.00019      0.69      61      90 ..      71     100 ..      55     104 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.25
     GTSE1_N 70 ekfvevfkEAhllalqlessskseeak 96
                ek + +++E  ++a q+   +k++e++
  EGE27049.1 27 EKIQTLINERAKVAQQVAVAKKNHENH 53
                888999999999999999888877765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00019
     GTSE1_N  61 klswsPltgekfvevfkEAhllalqlesss 90 
                 + +  Pl+gek++ +f+E +++ l+le+ +
  EGE27049.1  71 ARNEGPLSGEKMARLFREIMSVCLELEEPQ 100
                 55668*********************9544 PP

>> MtrA  Tetrahydromethanopterin S-methyltransferase, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.61   2.2e+03     116     131 ..      11      26 ..       9      51 .. 0.70
   2 ?    0.6   0.1      0.11   3.8e+02      18      60 ..     121     159 ..     116     166 .. 0.69
   3 ?    8.2   0.0    0.0005       1.8      24      76 ..     223     277 ..     214     294 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.61
                 -HHHHHHHHHH-EEEE CS
        MtrA 116 teeaverfqeqvelvd 131
                 +++ ++ +++q++ +d
  EGE27049.1  11 NTDEIKGYRTQIDAID 26 
                 6778888999988775 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.11
                 --TT-SEEEE-TT-SS-HHHHHHCT-SEEE----TTHHHHHHH CS
        MtrA  18 GdaespvavvtlgshleeeavleaGaaiaGplktenlGiekvv 60 
                 G+a ++v+ +t++  ++    +eaG+a+ G +  en   e vv
  EGE27049.1 121 GKAATTVSLTTITDVFR---EVEAGSAMYGVVPVENSS-EGVV 159
                 55555666666655554...4689********999953.5555 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0005
                 EEEE-TT-SS-HHHHHHCT-SEEE----TTHHHHHHHHHHHT-T..T--EEEEEE CS
        MtrA  24 vavvtlgshleeeavleaGaaiaGplktenlGiekvvanvisnp..nirflivtG 76 
                 vav + g   +  +     aaiaG +   + G+ k+  n+  np    rfli+  
  EGE27049.1 223 VAVSSNGEAARRLQNEWHSAAIAGDVAVAEYGLHKLYENIEDNPgnTTRFLIIGR 277
                 4444444444444444567************************953479998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2622.78
//
Query:       EGE27050.1  [L=767]
Description: bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-114  383.5   2.1   1.4e-114  383.0   2.1    1.2  1  EPSP_synthase   EPSP synthase (3-phosphoshikimate 1-carboxyvi
    1.7e-69  233.7   0.1    2.7e-69  233.0   0.1    1.3  1  PDH             Prephenate dehydrogenase
    0.00045   20.4   0.6     0.0012   19.0   0.6    1.8  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
  ------ inclusion threshold ------
      0.058   13.4   0.1       0.11   12.5   0.1    1.4  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.0   2.1  3.2e-118  1.4e-114       2     415 ..     333     755 ..     332     756 .. 0.93

  Alignments for each domain:
  == domain 1  score: 383.0 bits;  conditional E-value: 3.2e-118
                    ECSS--EEEEE--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHHH CS
  EPSP_synthase   2 ekgkrlegevkvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalrl 97 
                    +++++++g + vpG+ksis+r ++++aLa+g++ +t++L++eD +++l+a+  +g++i++  ++k ++   g +  ++ap +++l++gnsgt++rl
     EGE27050.1 333 RPQNAISGVISVPGDKSISHRSIMFGALADGVTHVTGFLQGEDALATLQAFADMGVKIERN-SDKVTIHGVG-IDGLKAP-KTPLYMGNSGTSMRL 425
                    68899**************************************************766555.5566666666.7778888.8************** PP

                    HHHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEET.SS-BEEEEETSSTTHHHHHHHHHHHTTSBSEEEEES-TTHH CS
  EPSP_synthase  98 LtallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkg.lklkgveikaevsSqqvtsllllaallaegtteleelasep 192
                    L+++l+ + + +v+tGd s+ +RP++r+  +Lr++Ga+i++  ++++apl + g ++l+ +e++++v+S+q++s+l+la+l a+gtt+++e  +e+
     EGE27050.1 426 LAGILSAQAFDSVMTGDVSLSQRPMERVAVPLRNMGAKIQSTGKKGTAPLSITGsQTLNAIEYQLPVASAQIKSCLILASLWAKGTTTIIE--PEV 519
                    ******************************************************9************************************..*** PP

                    HHHHHHHHHHHTT-EEEETTSSEEEEEE--SSB--EEEE--B-HHHHHHHHHHHHHTT-.EEEEES--GGGGH.HH..HHHHHHHHTTEEEE.... CS
  EPSP_synthase 193 siddtlkmlkkfgikietsgteesitvkGkeklpgteyvvegDassAayflvaAaitgg.evtvenvginslq.Gdiealdeilekmgaeit.... 282
                    s+d+t++ml++fg +++   ++ +i v+G+ +l++t+++v++D+ssAa+f+v +ai gg   t+e vg+n+++ G+   +d il  mga+it    
     EGE27050.1 520 SRDHTERMLNAFGYPVQV--DGCKISVTGGGRLTATDIIVPADISSAAFFMVLGAIGGGeGLTIEKVGMNPTRtGV---ID-ILTLMGADITvmne 609
                    ******************..6777***********************************99************555...55.88888888887777 PP

                    ....EESTSEEEEEETTS--BEE...EEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE... CS
  EPSP_synthase 283 ....qeedasivvgpsglklkdv...dietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaek... 368
                         e+ a+i+v+ps l+++d+    ++ ++de+p+l ++a +a g t ++g++elrvke+dr+++ma+ L+ lG + +++edg+ii++  +   
     EGE27050.1 610 avvgGEPIADITVRPSDLHGIDIpehLVPLAIDEFPILFIAASCAYGVTKLTGAKELRVKESDRIQVMADGLATLGIDSKVLEDGIIIQGKGIqge 705
                    777799999999999977777776669**********************************************************99555444555 PP

                    ....EB-EEEE-TTSTTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHHH CS
  EPSP_synthase 369 ...qlkgaevesydDhRiamalalaglvaegeveiddiectdksfpefee 415
                        + g+ +es++DhRiam++a+a+ +a+++++i+  e++++sfp+f e
     EGE27050.1 706 knaIFGGGVIESHHDHRIAMSFAVASSRATDDIIIQGTETVNTSFPNFAE 755
                    577799******************************************87 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.0   0.1   6.1e-73   2.7e-69      13     257 ..      42     291 ..      36     292 .. 0.95

  Alignments for each domain:
  == domain 1  score: 233.0 bits;  conditional E-value: 6.1e-73
                 EEEEE-SSHHHHHHHHHTTSSSEEES-.GGGGCCGSEEEE-S-GGGHHHHHHHHHHH.....S-TT-EEEE--S--CHHHHHHHHHCC..GCEEEEEES CS
         PDH  13 tvigydideekaeaalelglvdeatdd.ieavkeadivvlavPvevilevlkelaph.....lkedalitDvgsvKekvvreleellkegksfvgghPm 105
                 +++  d ++++++ al+ g++    +d ++av   d+v++a+Pv+ i +++k l+++     l  +a+itDvgs+K++v+++++e+    ++f+gghP+
  EGE27050.1  42 QITAADTNQKSIDDALAAGVISSGSTDiFSAVCGSDLVMIATPVKSIYPIMKMLKHAidlgdLASHAIITDVGSTKVSVAKAADEIFGAYHHFIGGHPI 140
                 68999**********************99*********************9999886222225689********************************* PP

                 ---S-SSGGG--TTTTTT-EEEEEE-TTS-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHCHHCCCCHHHHCGTCCHHHH CS
         PDH 106 aGteksGvdaareelfenavviLtPtektdkealekvkelleevgarvilmspeeHDrvvavvshlphvvaialaatlkekkndekeirklasggfrdv 204
                 aG e sG da + elf +++viL+P+ ++ +  ++k++++++ +ga+vi ms++ HD+++a++shlph++a++l ++l+ + ++   i+++a+ggfrd+
  EGE27050.1 141 AGAERSGFDARNGELFVQHKVILCPSTHSHAADFAKIAKIWQAIGAKVIQMSASRHDEILAYTSHLPHLLAFSLTHQLASHDDNLD-IFRYAAGGFRDF 238
                 ****************************************************************************8886665555.************ PP

                 HCGGGS-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH CS
         PDH 205 tRiaksnPelwadilleNkeavlealdkfikelkklkelienedaeeLvellk 257
                 +Ria+s P +w+di+++Nk a+l+ald+f ++l+  +++i +ed e+++ +l+
  EGE27050.1 239 SRIAASHPVMWHDIFIANKPALLNALDEFVNHLQVFRQIIDQEDSEKMFDWLA 291
                 *************************************************9996 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.6   2.8e-07    0.0012       2     155 ..      12     190 ..      11     192 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.8e-07
                    EEEE--SHHHHHHHHHHHHTT-........EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHC..SEEE..E-SSSHHHHHHHHHS..HCCC--TT CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagy........kvavynrtkekveelvaegakaaesieelvasl..dvvi..tmvkagkavdevieg..llealkkg 83 
                    + +iGlG +G+++++ + +a++        ++++ + +++++++++a+g+    s   + a +  d+v+  t vk+  ++ ++++    l  l++ 
     EGE27050.1  12 LCVIGLGLIGASFVQAVHNANHrlntplvgQITAADTNQKSIDDALAAGVISSGSTDIFSAVCgsDLVMiaTPVKSIYPIMKMLKHaiDLGDLASH 107
                    689**************999983333333346899999**********976666655444444556666115577777888888884334567999 PP

                    -EEEE-S---HHHHHHHHHHHHHTT-EEEEEEEESHHHH...HHHT-E......EEEEE..E-HHHHHHHHHHHHHHEEEEEE CS
  NAD_binding_2  84 dilidgstsspedtrelakelkekglkfldaPVSGGeeg...AekGtL......simvG..Gseeafervkpvleaigakvth 155
                    +i+ d+++++++ ++   +   +    + + P+ G e     A++G+L       + ++   ++++f++++++ +aigakv++
     EGE27050.1 108 AIITDVGSTKVSVAKAADEIFGAYHHFIGGHPIAGAERSgfdARNGELfvqhkvILCPSthSHAADFAKIAKIWQAIGAKVIQ 190
                    ************9999888888877777789*****9844449***9844333123445455677899999999999998875 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.4e-05      0.11       3      95 ..      13     101 ..      11     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
                     EEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEE.EES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--T CS
  NAD_Gly3P_dh_N   3 avlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlv.attdlaealkgadiivlvvPsqalrevlkklkgllkk 95 
                     +v+G G  G ++ +++++++h+      +  l+ +i ++ +n+k +++      +   +td+ +a+ g+d+++++ P + +  ++k lk+ ++ 
      EGE27050.1  13 CVIGLGLIGASFVQAVHNANHRL-----NTPLVGQITAADTNQKSIDDALAAGVISsGSTDIFSAVCGSDLVMIATPVKSIYPIMKMLKHAIDL 101
                     78888888888888888777654.....56889999999*****9999555555542479****************************999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 5815.27
//
Query:       EGE27051.1  [L=295]
Description: RarD protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-20   73.5  35.6    2.8e-13   50.2  11.8    2.0  2  EamA      EamA-like transporter family
  ------ inclusion threshold ------
        8.2    4.6  25.4      0.041   12.2   9.1    2.1  2  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2  11.8   3.1e-17   2.8e-13       2     132 ..      10     142 ..       9     147 .. 0.93
   2 !   29.5  15.8   7.6e-11   6.8e-07       8     136 ..     157     285 ..     151     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 3.1e-17
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl..aklslkd.wllllllgllgtvlafllffyalkktsasnasli 97 
                 +g+l++l a l+w+  +++ k l  +++ +++ ++r +  +++ll i+ ++++ +  +++++++ wl+l +l+ + ++  +l++++a+++ ++ +asl 
  EGE27051.1  10 KGLLTVLSAFLIWGCFPLYFKEL-IEYDAIEIIVHRVVWTFVILLGITIITRRFRwiDQIKKQPkWLFLTFLASVLIATNWLVYVWAVTHDQVLEASLG 107
                 6999******************5.789***********************999998866665556********************************** PP

        EamA  98 tslePvftlilsvlllgekltlkqllgivlillGv 132
                  ++ P++ +++s+l+++ekl l+q l+++l+ ++v
  EGE27051.1 108 YFIHPLVGVLFSMLIFKEKLRLMQKLAVLLAAAAV 142
                 *******************************9987 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 7.6e-11
        EamA   8 llaalfwaiyfvlskil.lrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvft 105
                 +l  l+w++y+v+++++ +  ++ l+l +  ++  +++ l ++ +  +++  + +++ ++ll l+   t++  ll++++ k ++  + s++++l+P ++
  EGE27051.1 157 MLLPLSWGLYGVIQRQTpFDALDGLFLETALLVPISLIWLQFSHVASSSM-AFWVSSEIWLLMLAGPVTLVPLLLYNISTKLVQFNTLSFLNYLTPSLI 254
                 67889*********997555555555555555555555555666666666.777788899999999********************************* PP

        EamA 106 lilsvlllgekltlkqllgivlillGvllil 136
                  +l++++++e++  k ll +vli +G+l+ +
  EGE27051.1 255 FLLAIFYYHEPFDAKRLLVFVLIWVGLLMFS 285
                 ***************************9975 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   9.1   4.6e-06     0.041      78     175 ..      43     150 ..       7     159 .. 0.68
   2 ?   -1.5   8.3     0.062   5.6e+02      76     164 ..     185     278 ..     164     291 .. 0.43

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.6e-06
     DUF2070  78 telivviisllaillsall..........qalvllalvlslalvfalrllvlvavsdesllkavlpaliqpllailllvly.fspesfllllllslifa 165
                   +++ +++ll+i++ +            +++++l + l+ +l++ + l+ ++av+++++l a+l ++i+pl+++l+++l+  ++ + ++ l+++l+ a
  EGE27051.1  43 HRVVWTFVILLGITIITRRfrwidqikkqPKWLFLTF-LASVLIATNWLVYVWAVTHDQVLEASLGYFIHPLVGVLFSMLIfKEKLRLMQKLAVLLAAA 140
                 3344444444444433222456778888555555555.5559**************************************9434456777777778888 PP

     DUF2070 166 lavylfivvv 175
                 ++ + ++++ 
  EGE27051.1 141 AVGIQIVWMG 150
                 8877777765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.062
     DUF2070  76 lltelivviisllaillsallqalvllalvls.......lalvfalrllvlvavsd..esllkav.lpaliqpllailllvlyfspesfllllllslif 164
                  + ++++++i l  ++++     ++++a+ +s       la  + l+ l+l+ +s    ++ + + l +l+ +l+++l++++y +p ++ +ll+++li 
  EGE27051.1 185 TALLVPISLIWLQFSHVA-----SSSMAFWVSseiwllmLAGPVTLVPLLLYNISTklVQFNTLSfLNYLTPSLIFLLAIFYYHEPFDAKRLLVFVLIW 278
                 333333333322222222.....3333333333555433222222222222222220022222223566666666666666663333443444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2364.91
//
Query:       EGE27052.1  [L=119]
Description: dihydroneopterin aldolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-31  107.0   1.1    7.9e-31  106.9   1.1    1.0  1  FolB      Dihydroneopterin aldolase
  ------ inclusion threshold ------
      0.091   13.0   0.1       0.12   12.6   0.1    1.3  1  HMD       H2-forming N5,N10-methylene-tetrahydromethanopterin
       0.16   13.0   0.1       0.24   12.4   0.1    1.3  1  RAC_head  Ribosome-associated complex head domain


Domain annotation for each model (and alignments):
>> FolB  Dihydroneopterin aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   1.1   1.3e-34   7.9e-31       1     110 [.       5     113 ..       5     114 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 1.3e-34
                 EEEEEEEEEEEESSSHHHHHC-EEEEEEEEEEE-CHHHHHHTTGGGSS-HHHHHHHHHHHHHSSEES-HHHHHHHHHHHHHCHSTESEEEEEEEETTSS CS
        FolB   1 ieikglrvpaiiGvnpeErelkQrvvvdleleldlskaaesddledtvdYaelakavkelvesssfkllEalaeriaealleefpvekvevrveKpnap 99 
                 ++i+gl ++++iGv+++Er +kQr+++d+++ +d+++a ++dd+++++dY+++++++++l+ + + +llE+la++ia+++l+++p+ +++++++Kpna 
  EGE27052.1   5 VFIQGLNIDTVIGVYAWERVIKQRLIIDAQMVCDMTRAIADDDVAYVIDYKAVCEDIEKLCHEVQAELLETLADKIAHHVLTNYPCCEITLTIHKPNA- 102
                 69************************************************************99**********************************. PP

                 STCESEEEEEE CS
        FolB 100 igaadavgvei 110
                 i++ad+vg++i
  EGE27052.1 103 IKQADSVGIKI 113
                 566*****997 PP

>> HMD  H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     2e-05      0.12       6      48 ..      35      76 ..      32     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2e-05
                HHHSTTHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH CS
         HMD  6 aVaDmgslvTAvtlagildyydvvtkilkapkemvekqilesL 48
                 V+Dm+ ++    +a ++dy  v+ +i k  +e+ +   le+L
  EGE27052.1 35 MVCDMTRAIADDDVAYVIDYKAVCEDIEKLCHEV-QAELLETL 76
                69************************98876664.34444444 PP

>> RAC_head  Ribosome-associated complex head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     4e-05      0.24      38      67 ..      53      82 ..      38      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4e-05
                HHHHHHHHHHHHHHH--HHHHHHHHHHHTT CS
    RAC_head 38 vidkvLedvdllieklddeeLaelaeklea 67
                +  +v ed+++l++++++e L++la k+++
  EGE27052.1 53 DYKAVCEDIEKLCHEVQAELLETLADKIAH 82
                345789*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 936.94
//
Query:       EGE27053.1  [L=143]
Description: hypothetical protein EA1_04385 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-09   35.7   0.0    1.2e-08   35.5   0.0    1.1  1  HPPK      7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase


Domain annotation for each model (and alignments):
>> HPPK  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   6.5e-13   1.2e-08       1      90 [.      11     120 ..      11     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 6.5e-13
                 EEEEEE-SSSHHHHHHHHHHHHHH.EEEEE---EEE--S...SS-GEEEEEEEE..EESS-HHHHHHHHHHHHHHTT--..C...S.TS-BS-EEEEEE CS
        HPPK   1 ylalGsNlgdreanleealealee.kvvkvSslyetepv...dqpdFlNavvev..etelspeellealkeiEkelgre..r...r.wgpRtlDlDill 87 
                 ++alGsN  d +  ++ a+++l+e   v +S+ +  + +   +q  + Na++ +  + +++ +++ ++lk+iE+++gr+  +   +   + ++DlDil+
  EGE27053.1  11 VIALGSNH-DAKVAFTCAIKSLQElGRVVLSQRICGQDFtgrSQRIYHNACAYIilTKTMQYTDIEQTLKQIERRCGRNpaKkctKyDYEVVIDLDILA 108
                 69*****9.6778999******876345677777777776766889****9985224579999***************9653343234599*******9 PP

                 ET.........E CS
        HPPK  88 yg.........l 90 
                  +          
  EGE27053.1 109 ARfdeqwqmnlA 120
                 776666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1150.07
//
Query:       EGE27054.1  [L=915]
Description: pyruvate dehydrogenase subunit E1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.1e-105  351.3   0.2   3.5e-105  350.7   0.2    1.3  1  PDH_E1_M         Pyruvate dehydrogenase E1 component middle d
    2.5e-15   56.3   0.0    1.7e-08   33.8   0.0    2.2  2  Transketolase_N  Transketolase, thiamine diphosphate binding 
    0.00094   19.1   0.0     0.0033   17.3   0.0    1.9  1  Transketolase_C  Transketolase, C-terminal domain
  ------ inclusion threshold ------
      0.051   12.4   0.1       0.24   10.2   0.1    2.0  1  XFP_N            XFP N-terminal domain
       0.12   12.4   0.7        0.3   11.1   0.1    2.0  2  BLACT_WH         Beta-lactamase associated winged helix domai


Domain annotation for each model (and alignments):
>> PDH_E1_M  Pyruvate dehydrogenase E1 component middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.7   0.2  9.7e-109  3.5e-105       1     229 []     470     696 ..     470     696 .. 0.99

  Alignments for each domain:
  == domain 1  score: 350.7 bits;  conditional E-value: 9.7e-109
    PDH_E1_M   1 lelpdeddktyeiqrkgsktrevattmafvrvlkdlvkdkkigkrvvpiipdeartfgmealfrtlkiytsegqkyesvdknlilsykedkegqileeg 99 
                 le+p++    ++   +gsk++e +ttm fvr+l  l+kdk + k vvpi+pdeartfg+e++fr+l+iy+s gq+y + d++ ++ y+e k+g +leeg
  EGE27054.1 470 LEIPELSV--FNQVLQGSKGKEQSTTMVFVRLLSALLKDKGLNKHVVPIVPDEARTFGLEGMFRQLGIYSSVGQNYVAEDADALMGYREAKDGHMLEEG 566
                 68888887..9999************************************************************************************* PP

    PDH_E1_M 100 iteagavaafiaaassydthdltllpvyvyysmfgfqrvgdliwaaadqlargflvgatagkttlageglqhqdghshllaasipavvsydpayayeva 198
                 i+eaga++a+ia ++sy+   l+++p+y+yysmfgfqr+gdl+waa+d +a+gfl gatag+ttl+geglqhqdghsh+l  ++p++v+ydp+y ye+a
  EGE27054.1 567 INEAGAMSAWIALSTSYSVNALPMIPMYIYYSMFGFQRIGDLAWAAGDCQAQGFLFGATAGRTTLNGEGLQHQDGHSHILFGTVPNCVTYDPCYGYELA 665
                 *************************************************************************************************** PP

    PDH_E1_M 199 vlvaeglkrmyaekenviyyltvlnenlvqp 229
                 v++++gl+rmya+ e v+yy+t++nen+++p
  EGE27054.1 666 VVMHDGLRRMYAQGERVYYYITLMNENYEHP 696
                 ******************************9 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   4.7e-12   1.7e-08      26     217 ..     102     294 ..      76     310 .. 0.72
   2 !   20.1   0.0   7.2e-08   0.00026     209     260 ..     353     406 ..     339     429 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 4.7e-12
                      HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTT.STT-S...S-SS--TTTSTT--S---STT CS
  Transketolase_N  26 GaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfr.qlgsk...tpGhPelghtagvevttGPLG 115
                      G  l+  + + +l+++  +h  ++p+       +  +Gh++  +Y+  +L G  ls e+l +fr +++ k   +  hP l  +   +  t  +G
       EGE27054.1 102 GGHLATFASSATLYETGFNHFWRAPSENHGGDMIYYQGHGAPGMYARSFLEG-RLSEEQLINFRrEVDGKglsSYPHPYLMPD-YWQFPTVSMG 193
                      4444444445555555555555555555555678889999999999999999.688899999986555541113457654433.3366666666 PP

                      HHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEGG..GT--S-HHHHHHHTT CS
  Transketolase_N 116 qGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGete..isftedvakrfeayg 207
                       G   ++  a+ +k l+   n+   +  d +++++lgDg   e  s  a+s+ag  kL++Li + + n   +dG +     + ++ ++ f+  g
       EGE27054.1 194 LGPLMSIYQARNQKYLT---NRGLIKDEDRKVWAFLGDGETDEPESLGAISMAGREKLDNLIWVINCNLQRLDGPVRgnGKIIQELESVFRGAG 284
                      66667777777777776...5555777899********************************************9962256889********** PP

                      -EEEEETTTT CS
  Transketolase_N 208 Whvievedge 217
                      W+vi+v  g+
       EGE27054.1 285 WRVIKVIWGD 294
                      *****95444 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 7.2e-08
                      EEEEE.TTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTT.TTSGGGTS CS
  Transketolase_N 209 hviev.edgedveaikaaieeakaekdkPsliklrtviGygspak.agtedvhG 260
                      ++i+  ++g+d +++ aa +ea ++k +P++i ++tv Gyg  ++ +  +++h 
       EGE27054.1 353 EIIRLnRGGHDPKKVYAAYAEAMKTKGQPTVILVKTVKGYGLSTQiQSVNKAHQ 406
                      45555489*********************************6554156677774 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   9.2e-07    0.0033       7      54 ..     716     764 ..     711     778 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.2e-07
                      ETTSSEEEEEETTHHHHHHHHHHHHHTT.TTCEEEEE-SEEESHHHHHH CS
  Transketolase_C   7 regkdvtlvayGsmveealeAaeeLeke.gisaeVvdlrtvkplDketi 54 
                      +  ++v l++ G  ++e+ +Aa+ L++e gi+a V+++ +++ l ++ +
       EGE27054.1 716 NGSTQVQLLGSGVILREVEKAAQILQDEfGITANVWSVTSFNELTRDGM 764
                      55789************************************99998876 PP

>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   6.7e-05      0.24      44     101 ..      99     159 ..      83     329 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.7e-05
       XFP_N  44 arllGhwGtvpGlsfly....ahlnrii.kkydqnmlyvvGPGhGgpalvaasylegsysely 101
                   l Gh  t +  + ly     h  r   +++  +m+y    GhG+p++ a+s+leg +se  
  EGE27054.1  99 DDLGGHLATFASSATLYetgfNHFWRAPsENHGGDMIYYQ--GHGAPGMYARSFLEGRLSEEQ 159
                 5566777777777666632224666664146778999986..7***************99842 PP

>> BLACT_WH  Beta-lactamase associated winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       3.2   1.1e+04      32      47 .]     209     223 ..     209     223 .. 0.81
   2 ?   11.1   0.1   8.4e-05       0.3      21      38 ..     843     860 ..     841     864 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.2
    BLACT_WH  32 LeeeGkVkregdkgkW 47 
                 L ++G++k e+  + W
  EGE27054.1 209 LTNRGLIKDEDR-KVW 223
                 7899****9996.655 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.4e-05
    BLACT_WH  21 AergvlahLeKLeeeGkV 38 
                 Ae+ v+a+L+KL +eG +
  EGE27054.1 843 AEHIVVATLKKLADEGDI 860
                 9**************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.39
# Mc/sec: 7035.04
//
Query:       EGE27055.1  [L=556]
Description: pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-71  238.6   0.0      9e-71  238.0   0.0    1.2  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    5.3e-39  131.9  10.7    3.8e-19   68.3   2.8    2.6  2  Biotin_lipoyl    Biotin-requiring enzyme
    3.1e-15   55.7   7.0    3.9e-06   26.6   0.1    4.3  4  Biotin_lipoyl_2  Biotin-lipoyl like
    1.6e-14   54.0   0.2    4.8e-14   52.4   0.2    1.9  1  E3_binding       e3 binding domain
    3.6e-07   29.6   4.3     0.0081   15.4   0.4    3.3  3  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    3.9e-06   27.5   1.3       0.04   14.6   0.1    3.5  3  HlyD_3           HlyD family secretion protein
    1.2e-05   25.1   7.5     0.0014   18.5   0.5    2.9  3  GCV_H            Glycine cleavage H-protein
    6.3e-05   22.5   1.2       0.74    9.5   0.0    4.4  4  PYNP_C           Pyrimidine nucleoside phosphorylase C-termin
    7.7e-05   22.6   5.8      0.059   13.3   0.6    3.3  2  RnfC_N           RnfC Barrel sandwich hybrid domain
     0.0019   18.0   2.7         12    5.7   0.1    4.4  3  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
     0.0045   16.9   6.6       0.98    9.4   0.1    3.8  4  TFX_C            DNA_binding protein, TFX, C-term
  ------ inclusion threshold ------
      0.069   13.5   0.7        1.9    8.9   0.0    3.2  4  PP-binding       Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.0   0.0     6e-74     9e-71       5     233 .]     330     556 .]     327     556 .] 0.97

  Alignments for each domain:
  == domain 1  score: 238.0 bits;  conditional E-value: 6e-74
                   XXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS--EEE CS
  2-oxoacid_dh   5 ervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeeekeivvkkhvniGv 101
                   e + l++++k+ + +l+      p++t +d +d+t++ +lr+elk +++ e  + lt+l+f++kava Al + P++n+++++++ +i+++k+vn+G+
    EGE27055.1 330 EIQDLTRLQKVSIPQLNYNT-YLPQVTQFDLADITDTESLRNELKGEFKAEG-IGLTILAFIVKAVAYALTQTPKFNSHLSDDNTQIIIRKSVNMGI 424
                   567899***********999.***************************8555.7******************************************* PP

                   E--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-HT---EE CS
  2-oxoacid_dh 102 AvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkegelvvrkvm 198
                   Avat++GL+vPvikna++k++ +ia e+ ela+kar++kl+++dl+g++ftis+ G+lG+t ftP++n pqv Ilgv+++  +p ++ +e+++r ++
    EGE27055.1 425 AVATDDGLIVPVIKNAQDKGIKQIAIEIGELAKKARDKKLTAKDLQGASFTISSQGNLGGTAFTPLVNWPQVGILGVSEASYQPRWNGKEFEPRLML 521
                   ************************************************************************************************* PP

                   EEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXXX CS
  2-oxoacid_dh 199 tlslsaDHRvidGaeaarFlntlkkllenpeelll 233
                   +lsls+DHRvi+Ga+aa F+++++kll +p ++ll
    EGE27055.1 522 PLSLSYDHRVINGADAAVFTRHIAKLLADPRRILL 556
                   *******************************9985 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   2.8   2.5e-22   3.8e-19       2      73 .]       2      72 ..       1      72 [. 0.97
   2 !   67.7   1.1   3.8e-22   5.6e-19       5      73 .]     128     195 ..     125     195 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 2.5e-22
                   EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73
                   eik+P++G+  +e v+e++vkvGd+V++++ ++ ve++K+++e+++  aGv+kei++++Gd +++gdll+++
     EGE27055.1  2 EIKAPDLGVESAE-VAEIMVKVGDSVSENDNMILVESDKASVEVPSTGAGVIKEIHISVGDHISEGDLLFTL 72
                   79******99998.*******************************************************986 PP

  == domain 2  score: 67.7 bits;  conditional E-value: 3.8e-22
                    ESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   5 sPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    +P++G++ +e v+ ++v+vGd+++++q+l+ ve++K+++e++ap++Gv++eil+k Gd+v+ g+  ++i
     EGE27055.1 128 LPDLGVDSAE-VADIMVAVGDEITKDQPLILVESDKASVEVPAPVDGVIEEILIKAGDSVSNGQAFITI 195
                    6999*99998.****************************************************988776 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.065        97       8      25 ..       7      27 ..       5      34 .. 0.83
   2 !   26.6   0.1   2.6e-09   3.9e-06       7      42 ..      46      81 ..      36      86 .. 0.85
   3 ?    2.5   0.1     0.085   1.3e+02      10      35 ..     135     160 ..     129     164 .. 0.84
   4 !   24.6   0.2   1.1e-08   1.6e-05       2      44 ..     164     206 ..     159     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.065
  Biotin_lipoyl_2  8 pv...sGrVaqlnVkdGqrVk 25
                     ++   s+ Va++ Vk G+ V 
       EGE27055.1  7 DLgveSAEVAEIMVKVGDSVS 27
                     55556899**********997 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 2.6e-09
  Biotin_lipoyl_2  7 apvsGrVaqlnVkdGqrVkaGdvLaelDsralqlal 42
                     +  +G+++++++  G+++ +Gd+L++lDs++ ++a+
       EGE27055.1 46 STGAGVIKEIHISVGDHISEGDLLFTLDSDQSDDAQ 81
                     33399**************************99876 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.085
  Biotin_lipoyl_2  10 sGrVaqlnVkdGqrVkaGdvLaelDs 35 
                      s+ Va + V  G+++ + + L+  +s
       EGE27055.1 135 SAEVADIMVAVGDEITKDQPLILVES 160
                      679*****************987666 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 1.1e-08
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaq 44 
                      +v++ apv+G+++++++k G+ V  G+  +++ s+   ++++ 
       EGE27055.1 164 SVEVPAPVDGVIEEILIKAGDSVSNGQAFITIKSKGISAKKSS 206
                      69999****************************9987777665 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.2   3.2e-17   4.8e-14       1      34 [.     254     287 ..     254     288 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 3.2e-17
                 SBE-HHHHHHHHHCT--TTTS---CTTTBE-HHH CS
  E3_binding   1 vlAsPaaRklAkelGidLsdvkGtGpgGRItkeD 34 
                 v+A Pa+RklA+elG+d+s+v+Gt  +GRI+keD
  EGE27055.1 254 VYAGPAVRKLARELGVDISAVTGTAAHGRILKED 287
                 6899****************************** PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   2.4e-05     0.036      20      97 ..      42     139 ..      32     143 .. 0.70
   2 ?    1.4   0.0       0.1   1.6e+02      30      54 ..     138     161 ..     132     164 .. 0.83
   3 !   15.4   0.4   5.4e-06    0.0081      19      75 ..     164     219 ..     157     258 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......................XXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  20 arvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkke.....................lleaarerLrllgvseeqia 97 
                 ++v ++ +G +++++++ +gd++++G+ L++l+s +  +aq+   +  ++ +++++++                      + ++++ L  lgv+++++a
  EGE27055.1  42 VEVPSTGAGVIKEIHIS-VGDHISEGDLLFTLDSDQSDDAQKTDSKSDDEPQTKQSAKdeddisigddeqtddqpdlneSAGSQTHHLPDLGVDSAEVA 139
                 5677778899******9.******************999999877777744444433344566666666666666655555555666666666666665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.1
                 XXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  30 veklyvnatgdkVkkGqpLaelysp 54 
                 v ++ v  +gd+++k+qpL+ ++s 
  EGE27055.1 138 VADIMVA-VGDEITKDQPLILVESD 161
                 5566666.9***********99986 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 5.4e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkk 75 
                  ++v a v+G +e++ ++  gd+V++Gq+ ++++s+ + a ++   +  ++k k+++
  EGE27055.1 164 SVEVPAPVDGVIEEILIK-AGDSVSNGQAFITIKSKGISAKKSSNKEQPAEKTKEED 219
                 567889999999999999.99999999999999999998877765554444444333 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.47     7e+02       7      32 ..      12      37 ..       9      47 .. 0.77
   2 !    8.5   0.0    0.0021       3.2       7      30 ..      49      72 ..      43      79 .. 0.89
   3 !   14.6   0.1   2.7e-05      0.04       2      31 ..     167     196 ..     166     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.47
      HlyD_3  7 dGvvvelnveegevvqagdelleiip 32
                + +v+e+ v++g+ v+++d++  +  
  EGE27055.1 12 SAEVAEIMVKVGDSVSENDNMILVES 37
                67899************999776654 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0021
      HlyD_3  7 dGvvvelnveegevvqagdellei 30
                +Gv++e+++++g+ +++gd l+++
  EGE27055.1 49 AGVIKEIHISVGDHISEGDLLFTL 72
                79********************97 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 2.7e-05
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleii 31 
                 + ApvdGv+ e+ +++g+ v++g++  +i 
  EGE27055.1 167 VPAPVDGVIEEILIKAGDSVSNGQAFITIK 196
                 569**********************99996 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   1.1   0.00077       1.1      40      76 ..      21      57 ..      11      64 .. 0.87
   2 !   18.5   0.5   9.1e-07    0.0014      40      74 ..     144     178 ..     135     205 .. 0.92
   3 ?   -2.4   0.0       2.7   4.1e+03      33      89 ..     271     325 ..     260     335 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00077
                -TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-G CS
       GCV_H 40 evgtkvkkgeslaavEsvKaasevyapvsGevvevNe 76
                +vg++v++++++  vEs Ka  ev++   G + e+  
  EGE27055.1 21 KVGDSVSENDNMILVESDKASVEVPSTGAGVIKEIHI 57
                79****************************9999865 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 9.1e-07
                 -TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE CS
       GCV_H  40 evgtkvkkgeslaavEsvKaasevyapvsGevvev 74 
                  vg+++ k+++l  vEs Ka  ev+apv+G + e+
  EGE27055.1 144 AVGDEITKDQPLILVESDKASVEVPAPVDGVIEEI 178
                 58*****************************9987 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.7
                 EEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-GGGTT-TTHHHH-T CS
       GCV_H  33 vvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvevNekleeepeliNkdp 89 
                 + +v+   +  ++ k++ ++ v sv + s+  a  sG+ +ev + l   p++ Nk+ 
  EGE27055.1 271 ISAVTGTAAHGRILKEDLFGYVKSVISGSTSQA-KSGT-TEVRSGLPSLPDMSNKEI 325
                 555555555567788888999999877665443.3444.677777777777777765 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       0.1   1.6e+02      36      53 ..      18      35 ..      16      46 .. 0.81
   2 !    9.5   0.0    0.0005      0.74      35      63 ..      54      82 ..      45      92 .. 0.83
   3 ?    3.0   0.0     0.055        82      36      56 ..     141     161 ..     139     171 .. 0.81
   4 ?    3.1   0.0     0.051        76      36      53 ..     178     195 ..     173     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.1
                ES--TT-EEBTTSEEEEE CS
      PYNP_C 36 lhkklGdkVkkGeplati 53
                +++k+Gd+V++++ ++ +
  EGE27055.1 18 IMVKVGDSVSENDNMILV 35
                789********9988766 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0005
                EES--TT-EEBTTSEEEEEEESSSCHHHH CS
      PYNP_C 35 elhkklGdkVkkGeplatiYankeeklee 63
                e+h+ +Gd++++G+ l+t+ +++++++++
  EGE27055.1 54 EIHISVGDHISEGDLLFTLDSDQSDDAQK 82
                68999**************9999987776 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.055
                 ES--TT-EEBTTSEEEEEEES CS
      PYNP_C  36 lhkklGdkVkkGeplatiYan 56 
                 +++ +Gd++ k++pl+ + ++
  EGE27055.1 141 IMVAVGDEITKDQPLILVESD 161
                 5789***********988555 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.051
                 ES--TT-EEBTTSEEEEE CS
      PYNP_C  36 lhkklGdkVkkGeplati 53 
                 + +k Gd+V+ G++ +ti
  EGE27055.1 178 ILIKAGDSVSNGQAFITI 195
                 5689***********999 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.5   0.00056      0.83      41      90 ..      15      65 ..       9      77 .. 0.78
   2 !   13.3   0.6   3.9e-05     0.059      41      89 ..     138     187 ..     131     199 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00056
      RnfC_N 41 pakplvkvgdkVlkGqk..iaeaegfvsapvhasvsGtVkaiekrlvahgsg 90
                 a+++vkvgd V +++   + e+++  s++v +  +G +k+i+  +  h s+
  EGE27055.1 15 VAEIMVKVGDSVSENDNmiLVESDKA-SVEVPSTGAGVIKEIHISVGDHISE 65
                6899********99875114556666.***************9888777665 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.9e-05
      RnfC_N  41 pakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahgs 89 
                  a+++v+vgd+++k q +   e+   s++v a+v G + +i   +  + s
  EGE27055.1 138 VADIMVAVGDEITKDQPLILVESdKASVEVPAPVDGVIEEILIKAGDSVS 187
                 5899************8755444345************999766655554 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0078        12      84     112 ..      53      81 ..       8      86 .. 0.74
   2 ?    2.2   0.0     0.094   1.4e+02      83     107 ..     138     162 ..     121     175 .. 0.81
   3 !    5.6   0.1    0.0086        13      85     114 ..     177     206 ..     169     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0078
                 EEES----SEE-SEEEEEEE-HHHHGGGS CS
  PTS_EIIA_1  84 FellvkegdkVkagdklvevdleaikkag 112
                  e++++ gd++++gd+l+++d ++ ++a+
  EGE27055.1  53 KEIHISVGDHISEGDLLFTLDSDQSDDAQ 81 
                 47899999999999999999998766665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.094
                 TEEES----SEE-SEEEEEEE-HHH CS
  PTS_EIIA_1  83 gFellvkegdkVkagdklvevdlea 107
                 + +++v+ gd++++ ++l+ v+ ++
  EGE27055.1 138 VADIMVAVGDEITKDQPLILVESDK 162
                 4568999**********99888776 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0086
                 EES----SEE-SEEEEEEE-HHHHGGGSS- CS
  PTS_EIIA_1  85 ellvkegdkVkagdklvevdleaikkagys 114
                 e+l+k+gd+V++g+  ++++ + i++++ s
  EGE27055.1 177 EILIKAGDSVSNGQAFITIKSKGISAKKSS 206
                 6899********************999866 PP

>> TFX_C  DNA_binding protein, TFX, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00066      0.98      17      63 ..      18      64 ..      12      69 .. 0.90
   2 ?    4.8   0.2     0.019        28      17      64 ..     141     188 ..     135     199 .. 0.87
   3 ?   -2.2   0.0       2.9   4.3e+03      49      75 ..     266     292 ..     255     294 .. 0.73
   4 ?    3.6   0.3     0.044        66      29      64 ..     412     447 ..     407     452 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00066
                EEE--GGGHHHHHHHHHHHHHHHS-S----HHHHHHHHHHH-SSS-- CS
       TFX_C 17 vtieeGtdlfdipkiiyaeadkagikvkydtieLikllreeapeaik 63
                + ++ G  + +  ++i+ e+dka ++v+ + + +ik ++ + ++ i+
  EGE27055.1 18 IMVKVGDSVSENDNMILVESDKASVEVPSTGAGVIKEIHISVGDHIS 64
                77899999999***************************999998886 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.019
                 EEE--GGGHHHHHHHHHHHHHHHS-S----HHHHHHHHHHH-SSS--- CS
       TFX_C  17 vtieeGtdlfdipkiiyaeadkagikvkydtieLikllreeapeaikg 64 
                 + ++ G ++++   +i+ e+dka ++v++    +i+ +  +a++ +++
  EGE27055.1 141 IMVAVGDEITKDQPLILVESDKASVEVPAPVDGVIEEILIKAGDSVSN 188
                 66888999999999***************9999999999999888876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.9
                 HHHHHHHHH-SSS-----SSS-EEEEE CS
       TFX_C  49 eLikllreeapeaikgrvvkedlevyi 75 
                 eL   ++  ++ a +gr +kedl  y+
  EGE27055.1 266 ELGVDISAVTGTAAHGRILKEDLFGYV 292
                 566667778888999999999986555 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.044
                 HHHHHHHHHHHS-S----HHHHHHHHHHH-SSS--- CS
       TFX_C  29 pkiiyaeadkagikvkydtieLikllreeapeaikg 64 
                 ++ii++++ ++gi v  d   ++ ++++++++ ik+
  EGE27055.1 412 TQIIIRKSVNMGIAVATDDGLIVPVIKNAQDKGIKQ 447
                 6899************************99998876 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.66   9.9e+02      26      41 ..       7      22 ..       6      26 .. 0.90
   2 ?    8.9   0.0    0.0013       1.9      18      44 ..     122     148 ..     113     154 .. 0.82
   3 ?   -1.9   0.0         3   4.5e+03      39      51 ..     261     273 ..     260     275 .. 0.69
   4 ?   -1.8   0.0       2.7     4e+03       9      26 ..     353     371 ..     349     374 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.66
  PP-binding 26 dlGlDSllavellaal 41
                dlG+ S  ++e+++++
  EGE27055.1  7 DLGVESAEVAEIMVKV 22
                8***********9986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0013
  PP-binding  18 idpdtdlfdlGlDSllavellaaleee 44 
                  + +++l dlG+DS  ++++++a+ +e
  EGE27055.1 122 GSQTHHLPDLGVDSAEVADIMVAVGDE 148
                 45677899**************99876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3
  PP-binding  39 aaleeefgveipl 51 
                 ++l +e+gv+i+ 
  EGE27055.1 261 RKLARELGVDISA 273
                 5677888888775 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.7
  PP-binding   9 evlgvpleeidpdtdlf.d 26 
                 +v++ +l +i+++++l+ +
  EGE27055.1 353 QVTQFDLADITDTESLRnE 371
                 7889999999999999855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 3660.92
//
Query:       EGE27056.1  [L=268]
Description: putative glutathione S-transferase YghU [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-08   33.7   0.0    8.1e-08   32.5   0.0    1.7  1  GST_N     Glutathione S-transferase, N-terminal domain
    7.7e-07   29.4   0.0    1.9e-06   28.2   0.0    1.6  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    2.6e-05   24.3   0.1    0.00011   22.4   0.1    1.9  1  GST_C     Glutathione S-transferase, C-terminal domain
    5.4e-05   23.1   0.0    0.00013   21.9   0.0    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    6.2e-05   23.2   0.0    0.00013   22.2   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
     0.0059   16.8   0.1      0.016   15.4   0.1    1.6  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.7e-11   8.1e-08       3      76 .]      46     127 ..      44     127 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.7e-11
                 EEEESSSTSHTHHHHHHHHHHTT.....-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET....TEEEESHHHHHHHHHH CS
       GST_N   3 ltlysirgsprahrirlllaakg.....veyevvpldfeageekspellklnplgkvPaLedn....gkkltESraIleYiar 76 
                 + lys  + p+  ++ +ll++++     + y   +++  ag +  ++++k+np+ k+PaL d+       ++ES+aIl Y+a+
  EGE27056.1  46 YQLYSLNT-PNGIKVNILLQELKqlgaiTGYDAYKINIMAGDQFGSDFVKINPNSKIPALLDQsttpATRIFESGAILLYLAQ 127
                 66777766.788888888885442223345666788888888888******************9999999***********96 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   6.3e-10   1.9e-06       1      72 [.      48     130 ..      48     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 6.3e-10
                 EES-TTSHHHHHHHHHHHHHT-........-EEEE---TTTTHHHHHHH-TT--SSEE....ETTS-EEESHHHHHHHHHHHH- CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekgl........pvevvevtpgehdeellaknplgkvPvL....eddgealtdSlaIidyLeelyp 72 
                 Ly+ ++ p+  +v ++L+e+++        ++++  + +++    + ++np+ k+P+L    +++++ +++S aI+ yL ++++
  EGE27056.1  48 LYSLNT-PNGIKVNILLQELKQlgaitgydAYKINIMAGDQFGSDFVKINPNSKIPALldqsTTPATRIFESGAILLYLAQKHN 130
                 677777.99**********99977666555577755545555889*************887666799**************997 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   3.5e-08   0.00011      30      93 .]     182     255 ..     179     255 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3.5e-08
                 HHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHH........HHHHHTTTTT........TTTSHHHHHHHHHHHTSH CS
       GST_C  30 kvaevlsaleeelkkqdylvGdkltlADialvpiln........wlqrlglafg........qekfpnlkawlerimarp 93 
                 +++++l++l+ +l+++++ + d +t+AD a++p+          + +      +           + n+ +w ++i+ar+
  EGE27056.1 182 ETKRQLDVLDQHLANHTFMIKDDYTIADMAIYPWYGrlclgelyVSD------SydaakfleVHTYQNVIRWAKTIAARE 255
                 6899******************************9866333332222......244445577788888888988888885 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.5e-08   0.00013      10      48 ..     182     228 ..     175     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.5e-08
                 HCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHH........H CS
     GST_C_2  10 qldaaldaleahLadspflfGdqptlaDialapflvrl........r 48 
                 + ++ ld+l++hLa ++f+  d  t+aD a +p+++rl        +
  EGE27056.1 182 ETKRQLDVLDQHLANHTFMIKDDYTIADMAIYPWYGRLclgelyvsD 228
                 56788********************************9666555443 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   4.2e-08   0.00013      23      68 ..      82     126 ..      54     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.2e-08
                 EEH...-TTSHHHHHHHHCTTTSSSEEE-CTTE...EEESHHHHHHHHH CS
     GST_N_2  23 vvvlepkgfekseefprlnprgtVPvLwdkdgq...vineSseIlryle 68 
                  +     g++ +++f ++np+ ++P+L d  ++    i eS +Il yl+
  EGE27056.1  82 IM----AGDQFGSDFVKINPNSKIPALLDQSTTpatRIFESGAILLYLA 126
                 23....5778889****************8777788999********97 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   5.3e-06     0.016      29      93 ..     183     258 ..     174     262 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.3e-06
                 HHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH............TCC..CC-HHHHHHHHHHHTSHHHH CS
     GST_C_3  29 lpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea............eal..kkfpklkalyervearpkik 93 
                  ++ l++++++l+  + ++++ d  T+AD+a++ +   l                 l   ++ ++ ++ + ++ar++++
  EGE27056.1 183 TKRQLDVLDQHLA--NHTFMIKDDYTIADMAIYPWYGRLCLGelyvsdsydaakF-LevHTYQNVIRWAKTIAAREAVQ 258
                 57889********..999***************9888877666655555444321.13355566668888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2117.85
//
Query:       EGE27057.1  [L=1377]
Description: exodeoxyribonuclease V gamma subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.5e-121  406.3  12.9   4.3e-121  405.5  12.9    1.3  1  Exonuc_V_gamma  Exodeoxyribonuclease V, gamma subunit
      3e-17   63.1   0.8    8.1e-17   61.7   0.8    1.8  1  RecC_C          RecC C-terminal domain
  ------ inclusion threshold ------
        0.1   12.7   0.4         13    5.8   0.0    3.3  3  DUF2096         Uncharacterized protein conserved in archaea 


Domain annotation for each model (and alignments):
>> Exonuc_V_gamma  Exodeoxyribonuclease V, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.5  12.9  7.2e-125  4.3e-121       1     759 [.       1     938 [.       1     945 [. 0.83

  Alignments for each domain:
  == domain 1  score: 405.5 bits;  conditional E-value: 7.2e-125
                     -EEEEEESSHHHHHHHHHHHHHH.S--SS.......SS--EEEE-SSHHHHHHHHHHHHHTTS-BESEB---HHHHHHHHHHHHSSS--SS-T.. CS
  Exonuc_V_gamma   1 mltlyqSnrlevLaellakllre.eplan.......pfepeiilvqskgmarwLklelAekkGiaanlefplpasflwqllkavlpevpeesp.. 85 
                     m+t++qSn++ +L+++l+++ ++ + +++       +f+p i++v+s+ + +wL+  +Ae+ Gi++ + ++++++++wql+++vl    + +p  
      EGE27057.1   1 MFTITQSNDTQILLDHLIHYYQQtQAQRQgealgisVFSPFIVIVPSMVLGDWLNRSIAERLGISTLFMTQFWGQYQWQLIQQVLRIDANHHPad 95 
                     9******************999865554466777779***********************************************99733333345 PP

                     .........T-HHHHHHHHHHHHHHHT.......SSSSTHHHHHHT.......TSS-SS...HHHHHHHHHHHHHHHHHTTSSHHHHHHHCTT.. CS
  Exonuc_V_gamma  86 .........fskealtWrlmrlLpell.......eeeefaplrkyl.......skdsdq...lklyqLaekiAdlFdqYlvyRpdwlaaWeag.. 152
                              +s +++ Wr++ +++ l+        ++++ pl ++l       ++   +    +l+ ++e+++++F +Yl+ Rp+wl+aW  +  
      EGE27057.1  96 alqvpevavLSGSVMRWRIFGFIKTLSseqiikiMQDDHHPLYDFLmtiydtqHQ---SipeHRLWRICEEVSSVFVRYLTHRPEWLHAWTHDlp 187
                     566667777**************77553333333334566666777877554433...25669******************************** PP

                     ...........................---TT--TTHHHHHHHHHHHHHHHHHTT-----SHCCHHHHHHHHHS...STT--TS--SEEEEES-- CS
  Exonuc_V_gamma 153 .........................eekklakleederWQaiLWralvaelkeekqeiqaranlheeflealak...kekklkklPkrifvFgis 219
                                               +  +++  + e+  + LWr+l+ e+ + ++   +r       l+ l+    ++++ k+lP+ +++F+i+
      EGE27057.1 188 lpesidemidtkdrfandysdsdptPKWLIQQYHDLEKLLRYLWRQLFSEVYAYRETLEVRFWAV---LDGLRGesvAAEAYKSLPNHLYLFTIQ 279
                     *********99999877777776665556666666666699***********9998888753333...56665556799999************* PP

                     ---HHHHHHHHHHTTTSEEEEEEE-S-SS--S--S-TTTSTTHSSTT-SSSSBSS-SSHHHHHHTHHHHHHHHHHTT-........SSEEEEEE- CS
  Exonuc_V_gamma 220 slppsylevLkalskhidVhlfllnPcreyWgdivdrkqllreqleeeeedelleegnpLLaslGkqgrdfldlleel.......eeeskeidlf 307
                     ++p  +l++Lk+ls h++Vhl+++nP++ +W+divd++ l+++++ + +   l++ g+ LL++lGk +r+++ +l+++       e+e  + +++
      EGE27057.1 280 QIPLLELQFLKRLSVHLNVHLLHFNPSKMFWADIVDKNWLATQRIINPNLVYLKDYGHVLLSRLGKESRETFAMLADMsggdyyyEKEGVNRRFY 374
                     ************************************99999999999999999*******************************94444444444 PP

                     -...................---S-SHHHHHHHHHHH..............................HHH--TTSEE--TT--SS.....EEEEE CS
  Exonuc_V_gamma 308 e...................eeeeeslLqqlqadile..............................kaedeekklaleekDrSi.....qihsC 348
                     e                    +e+eslL+ql++dil                               ++++    l l+++D+S+     +ih+C
      EGE27057.1 375 EtyrtpkdwqvdwqddfvspVQESESLLNQLKSDILMledgeatkqwwqqelvsafkdsafweqkvkTKSQLMLPLGLDKNDQSLrlpslSIHAC 469
                     46666666666666666665566666************************************9977555555556669****9752222279*** PP

                     SSHHHHHHHHHHHHHHHHHHS....TT--GGGEEEEESTHHHHHHHHHHHTSCST..TTT---EEE-SEETGGGHHH...HHHHHHHGGGGG--- CS
  Exonuc_V_gamma 349 hsplREvevLhdqLlallead....ptlqprDilVmvpdieayaPyIeaVFgaae..derklpysiaDrsakeespl...laaflelLeLpesrf 434
                     hs  R++ev +  + + l++     +  +++Di+V +p+ +a +++I+ VF++    d+ klp +i++   +e + l   +++f++lL  ++ rf
      EGE27057.1 470 HSLKRQLEVARMIIARYLNEPnsdgSHRKLSDIVVYLPEAQAAEDLIRLVFNDDVgmDGLKLPAKITGTASREVDSLmaaISGFYRLLGAKNARF 564
                     ******************887555567************************532245***********77777766611156799********** PP

                     -HHHHHHHTTSHHHHHHTT--HHHHHHHHHHHHHHT--S-SSHHHHHH..TT----SSSSHHHHHHHHHHHHSS-S...............TT-- CS
  Exonuc_V_gamma 435 tasevldlLevpavarrfgldeedleqlrewlaeagirwGldaehree..lglpadeqnswrfgLdRlllGyalge...............engl 512
                       ++v ++L +pa+ +  gld e +++ +++l++ag+++G+da+h +   ++++ d ++s++++LdR++ G+ ++                ++++
      EGE27057.1 565 YRDDVYEWLMTPALYESLGLDFESVNRACQLLDAAGFHRGFDAAHLAMtlNEADLDYRYSFSYALDRIVAGFLTPCdssspsslmhpfkwrDESF 659
                     **********************************************99544778899******************98888888888888877777 PP

                     SSS----TTS-SCTHHHHHHHHHHHHHHHHHHHHSSS-B-HHHHTTHHHH.HHHHH----SHHHHH......HHHHHHHHHHHHHHHHHTT--S. CS
  Exonuc_V_gamma 513 legilpydevegseaellgklaellerLekwrqrlskprtleeWlerlse.lledffaedeeeeee......lqelrealaelaeeaaaakfeq. 599
                      e  lp+++v+  +  +++ l+ ++  L+++r++ ++ +++ +Wl++++  +++++f++  e+++       ++ +++ +++ ++  +++   + 
      EGE27057.1 660 QEASLPLEGVTLADQPIVEALCLIHAGLREFRDEYQRLAPVIDWLHHIEHrVINRYFTKYHETSQMrvifkvMNSISASIRANHHYHHHT---Kn 751
                     99*********************************************9861667777444444444454333333333333333333333...13 PP

                     ........-B-HHHHHHHHHHHHHH-EE-TTTTSSSEEEEE--TT----EEEEEEE--BTTTSS------SS-HHHHS--.TT---HHHHHHHHH CS
  Exonuc_V_gamma 600 ........elslevvrelleerlsqesasqrfltGkvtfctllpmrsiPfrvvclLGlndgdfPrqdepagfDlmakepr.kgDrsrrdddrylf 685
                             el+le+v e +++ ls++ +s + ++G++tf++   +r++Pf +  +L +n ++fPrqd++a++Dlm++  + +gDr  +ddd  +f
      EGE27057.1 752 stqgtqniELTLEFVLESMASLLSSQAVS-AEPAGTITFARFGALRNVPFGLTLMLDMNLSAFPRQDRQARLDLMKAGLKrRGDRFLEDDDNGAF 845
                     3356666679*******************.9*********************************************96555************** PP

                     HHHHHHEEEEEEEEEESBETTTTEB--B-HHHHHHHHHHHTTEE-S.....................HHHHHHHHHHEEE--SSTTSGGGG.SSS CS
  Exonuc_V_gamma 686 LeallsAreaLyiSYvgrsirdnserpPSvlvselldylaqnfalk.....................geealkalklvvehplqpfspknFeeks 759
                     L+a+l++r+a  i+Y++    d++++ P+++vsel+++ + n+ ++                     + +  ++l l+ eh  ++f+++ F e++
      EGE27057.1 846 LDAILCSRDACAIFYTNV-ADDGTQLLPASPVSELIEFFKSNVDWAvdlqadhtnqadqihaklatiAPKLVQQL-LIYEHAANAFDASVFYETK 938
                     ***************976.68***********************99******99887776666655444444444.6688***********5554 PP

>> RecC_C  RecC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.8   1.4e-20   8.1e-17       5     195 ..    1031    1305 ..    1027    1309 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 1.4e-20
      RecC_C    5 elddLirFlrnParaFlrqrLgvrleeeeeeleddepfeldgLeryqlkdrllealla............................e.ellarlrar 72  
                   l+++   l+nPa a+l+++L +  + e+     +ep++ldgL +yqlk++l++a+ +                            e + + r+  +
  EGE27057.1 1031 LLNQIYHTLKNPATAYLKHKLPLLYDTED--GFLEEPLSLDGLGQYQLKETLIDAMAQgvfdgmpmdefdyhklidtiymnddkasEfAHIVRIYYD 1125
                  5899999************9866666555..55679************************************999999998876552668899999* PP

      RecC_C   73 geLPpgafGelaleelleqvealaealrallgeep................leslevdldlggtgLtgtldglrergllrwrpsklkakdllraWle 153 
                   +LP+ga    +l++l+ q+++l++ +++ l++ +                ++ ++v+l++ +  ++  l+    +++lr+ p++++a + lr +l+
  EGE27057.1 1126 NLLPAGANRLTSLDNLVGQLAKLTDDFAQNLTDLQvkkqqlqyssmisptkEQYIAVELNHIPLDIVAKLPISC-DQWLRVLPNTVRAGHFLRFYLH 1221
                  ********************************999997788888888777766777777777777888888666.6699999*************** PP

      RecC_C  154 hLalca..........................................lpaeeArelLaellalyrqGlrqpLpffpktalayl 195 
                  hLa+++                                          + +e+A+++L+ ++ +  ++ + pL +++ t+l+ +
  EGE27057.1 1222 HLAWQVsrqtdqkdieqnlgsslwqfgqasndlkdfhlndvsllklkpIHKETAKRQLQNFMVMGLLAKQMPLVLPLMTSLNIV 1305
                  ***777***********************************************************************9998765 PP

>> DUF2096  Uncharacterized protein conserved in archaea (DUF2096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.28   1.7e+03      20      69 ..     186     236 ..     182     259 .. 0.83
   2 ?    2.2   0.2     0.028   1.7e+02      47     104 ..     389     445 ..     381     461 .. 0.77
   3 ?    5.8   0.0    0.0022        13      26      66 ..     472     512 ..     461     527 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.28
     DUF2096  20 kevpkevlenlrlaktiinfYk.ldphapdlikelkkaekelneiqeaLld 69 
                  ++p+++ e + +     n Y  +dp+ + li++ ++ ek l ++ ++L++
  EGE27057.1 186 LPLPESIDEMIDTKDRFANDYSdSDPTPKWLIQQYHDLEKLLRYLWRQLFS 236
                 67899999999998888887762688888899************9999986 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.028
     DUF2096  47 pdlikelkkaekelneiqeaLldlaekvdeeyakkwldklkkasrgekvleep.kkksk 104
                 +d +  +++ e+ ln++++ +l l    +e +++ w ++l  a +  +  e++ k+ks+
  EGE27057.1 389 DDFVSPVQESESLLNQLKSDILMLE--DGEATKQWWQQELVSAFKDSAFWEQKvKTKSQ 445
                 458889999*************999..66667777788999999888777654144554 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0022
     DUF2096  26 vlenlrlaktiinfYkldphapdlikelkkaekelneiqea 66 
                 +  +l +a++ii  Y  +p+ +   ++l ++  +l e+q a
  EGE27057.1 472 LKRQLEVARMIIARYLNEPNSDGSHRKLSDIVVYLPEAQAA 512
                 66799******************************999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.42
# Mc/sec: 9806.83
//
Query:       EGE27058.1  [L=359]
Description: sulfate ABC transporter substrate binding protein CysP [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-37  130.0   0.0    1.5e-37  129.5   0.0    1.1  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    9.9e-11   42.1   3.2    1.8e-10   41.3   3.2    1.4  1  SBP_bac_1   Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.024   13.8   0.0    1.5  1  PBP_like    PBP superfamily domain
      0.015   15.2   0.0      0.033   14.1   0.0    1.5  1  SCO1-SenC   SCO1/SenC


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0   3.4e-41   1.5e-37       6     228 ..      59     304 ..      55     306 .. 0.89

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 3.4e-41
                 -SSTHHHHHH.HHHHH.HHHH-..--EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGG......GG-EEEEEEEEEEEESTT-TT--- CS
  SBP_bac_11   6 agslaaalre.laaaF.eahtg..vkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqa......esavplassplviavpkgnpkkik 94 
                 + ++++a++e  ++ + +++++  +k++ s+ggs+k+a ++++g ++D++ + +   +ella+a lv+       ++++   +s++v++v++gnpk+ik
  EGE27058.1  59 SRDFYKAYNEvFINHYlTNYPNtkIKIKQSHGGSSKQALSVKNGLQADIVTMNQGSDIELLADAKLVDGnwrhafPNHAIPFTSTIVFLVREGNPKGIK 157
                 567777777635889988865555***************************************************9999999***************** PP

                 SHHHHHHSS--EEEE--T-TTTTHH.HHHHGGG--..........HHHHHHHHHTEEEEESSHHHHHHH.HHTTT-SEEEEEHHHHH...HSTTSSEEE CS
  SBP_bac_11  95 gwadLlkpglklavadPttspsGlaalalleaaga..........qellkalekkvvklgessrqllta.veageadagivyeseakaa.engdkleav 181
                 +w+dL+  g+ +++a+P+ts+ G++a+  +  +g           ++++kal ++v +++++ r ++t+ +++g  d++i+ e+ea+   ++ ++++++
  EGE27058.1 158 DWNDLATSGIDIIIANPKTSGNGRYAFLGAYGYGLnayhndeaqtHAFVKALLSHVKVFENGGRAATTTfAQRGIGDVLITFENEANVIkSKFGNVDII 256
                 ************************977555544446666677788**************9999887777366799***********6652599****** PP

                 E--TTT--....EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT CS
  SBP_bac_11 182 ylpeglnl.dpldypaavlkkaakreaAraFlafLrspeaqailrkyG 228
                 y++ ++n+ +p++++  v+++ +  +aA ++l+ L+s+eaq++++k+ 
  EGE27058.1 257 YPSYTVNAeNPIAVVKSVTDNKGTTKAATEYLNHLYSDEAQELATKFF 304
                 *******************************************99976 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   3.2   4.1e-14   1.8e-10       5     315 .]      60     298 ..      56     298 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 4.1e-14
                 HH.HHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHH CS
   SBP_bac_1   5 te.gaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkil 102
                 ++ ++a+++++++ +   +p+ k++i+++ +gs +q  +l + +G ++ D++++           ++  ++  +++a+l++g+++              
  EGE27058.1  60 RDfYKAYNEVFINHYLTNYPNTKIKIKQSHGGSSKQ--ALSVKNGLQA-DIVTM-----------NQGSDIELLADAKLVDGNWRH------------- 131
                 677889999**9*986669*****************..********55.*****...........888999999999998888743............. PP

                 CEEE.ES.EEEEEEEEEEE...ETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCT.....HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSH CS
   SBP_bac_1 103 dskv.ly.vPlyaargliY...NkdlfekagldppwtWdelveaakklkekgkkp.....iggarggsasgtayyfalalakslggkvfdkdgggldnp 191
                   ++ +  +P+ ++ ++ +   N++  +         W++l+  +  ++ +++k+     ++ ++ + ++ +ay+                        
  EGE27058.1 132 --AFpNHaIPFTSTIVFLVregNPKGIK--------DWNDLATSGIDIIIANPKTsgngrYAFLGAYGYGLNAYH------------------------ 196
                 ..34566699999999999666666666........*******************44433333333333333333........................ PP

                 HHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHH.TTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEE CS
   SBP_bac_1 192 egvtaatylvklyavanltkelkgkgaenkdgaaalalfe.aGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgaygl 289
                     ++++++ ++    +++ l+ +++ + +g+aa++ f+ +G  +++i + ++a++ +++ ++v+ + ++  ++                      ++
  EGE27058.1 197 ----NDEAQTHAF----VKALLSHVKVFENGGRAATTTFAqRGIGDVLITFENEANVIKSKFGNVDIIYPSYTVN-------------------AENPI 268
                 ....445555555....7788999***************98999***********99999999999999999995...................66679 PP

                 EEBTTCSTHHH....HHHHHHHHTSHHHHH CS
   SBP_bac_1 290 aipkgsknpea....AkkFldfllspeaqa 315
                 a++k+  + ++    A ++l+ l+s+eaq+
  EGE27058.1 269 AVVKSVTDNKGttkaATEYLNHLYSDEAQE 298
                 ****99996666777*************96 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.3e-06     0.024      73     107 ..     146     182 ..     136     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.3e-06
                 CCCHCCHHHS--BGGGC-S-B-..EEEEE-TTSHHHH CS
    PBP_like  73 lvvakgnpkkitnwkdladapl..rlvnRetGSGtrd 107
                 ++v++gnpk+i++w+dla +++   ++n++t+   r+
  EGE27058.1 146 FLVREGNPKGIKDWNDLATSGIdiIIANPKTSGNGRY 182
                 89***************88665105556665555555 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.4e-06     0.033      22      74 ..      13      65 ..       4      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.4e-06
   SCO1-SenC 22 kpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiTvDPerDtpev 74
                +   +ffg t C +   t+++n + + +  +++++++++l ++ D  rD  ++
  EGE27058.1 13 TAFGIFFGLTACSNNTKTSIQNTDTTASSTEANQDPIELLNVSYDVSRDFYKA 65
                56679********************************************7665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2707.55
//
Query:       EGE27059.1  [L=411]
Description: O-succinylhomoserine sulfhydrylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.7e-130  432.7   0.0   9.9e-130  432.5   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    6.4e-11   42.0   0.0    7.1e-11   41.9   0.0    1.3  1  Aminotran_1_2    Aminotransferase class I and II
    3.3e-08   33.2   0.0    1.4e-07   31.2   0.0    1.9  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    7.1e-08   31.8   0.0    1.1e-07   31.2   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
    7.5e-06   24.7   0.0    1.3e-05   23.9   0.0    1.4  1  Met_gamma_lyase  Methionine gamma-lyase
    0.00043   19.2   0.0    0.00063   18.7   0.0    1.1  1  GDC-P            Glycine cleavage system P-protein


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.5   0.0  3.3e-133  9.9e-130       1     381 [.      22     408 ..      22     409 .. 0.96

  Alignments for each domain:
  == domain 1  score: 432.5 bits;  conditional E-value: 3.3e-133
                      HHHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH...CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TT CS
  Cys_Met_Meta_PP   1 eTllvhagqekdeqtgavavpiyltstykfkdvdea...fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaG 91 
                      +Tl+v+ g ++  ++g+++++i++ts+y++ ++++a   f+g++kg++YsR +npt++++e+r+a Le+ge+a+a++sGm+Ai ++ la lkaG
       EGE27059.1  22 QTLAVRGGYHRT-DEGEHNEAIFTTSSYVYASAADAadhFNGNKKGNVYSRHTNPTVRAFERRLALLENGERAVATASGMGAILTMCLAYLKAG 114
                      5999****9976.79****************99988899******************************************************* PP

                      EEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GG CS
  Cys_Met_Meta_PP  92 deivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrpl 185
                      d++++ ++l+g++ +l++ +++ +g+ev++vd+ d e++++ai++nt+++y E+p+npl +++D++ ++kla+++++l++vDn+fa+p++q+pl
       EGE27059.1 115 DHLLCAKQLFGSSIALFDGYFQGFGVEVSYVDCFDNEAWAAAIRPNTRVLYCESPSNPLAQIADLRYLSKLAHAHDALLIVDNCFATPAIQKPL 208
                      ********************************************************************************************** PP

                      GGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-T CS
  Cys_Met_Meta_PP 186 klgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYp 279
                      +lgaD+v+hSaTKy++G++++++G++v  g++el++++  + ++ G  lspf+aw+ll+Gl+TLslR++ h  nA +vA+fL++hp+v+kv + 
       EGE27059.1 209 ELGADVVIHSATKYIDGQGRILGGALV--GRDELMEKAFGVVRTGGISLSPFNAWVLLKGLETLSLRMKVHCDNANQVAQFLASHPNVKKVHFS 300
                      ***************************..5669999999999**************************************************** PP

                      TSTTSTTHHHHHHHSSS....G-S....EEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE- CS
  Cys_Met_Meta_PP 280 glpshpqhelakkqlkg....agg....vlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsv 365
                      gl++hp+helak+q++     + g    +++Fe+ ++ ++a +++d+++++s++++lG++++ i++pa++th ++++e+r++agv d+liRlsv
       EGE27059.1 301 GLSDHPSHELAKSQHTAlevtG-GafgaIIGFEVADQ-ASAWQVIDSTRMISITNNLGDAKTTITHPATTTHFRMTPEQRIEAGVHDGLIRLSV 392
                      **************98522221.13455*******99.679***************************************************** PP

                      -SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 366 GiEdvdDliaDlkqal 381
                      GiEd+ D+i+Dl+++l
       EGE27059.1 393 GIEDARDIIKDLAHGL 408
                      ************9998 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   2.4e-14   7.1e-11      25     198 ..      55     207 ..      39     375 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 2.4e-14
                    HHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-TH....HHHHHHHTT CS
  Aminotran_1_2  25 kaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyas....yknilrlsg 114
                     a+ +  g  +g+ + + ++++   ++e +la + +         e+av + sG ga++ ++ + lk  +gd  l  ++ ++s    ++ +++  g
     EGE27059.1  55 DAADHfnGNKKGNVYSRHTNPT-VRAFERRLALLEN--------GERAVATASGMGAILTMCLAYLK--AGDHLLCAKQLFGSsialFDGYFQGFG 139
                    5554455555555555555555.6788888888888........999*******************9..************98444466788999* PP

                    SEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS CS
  Aminotran_1_2 115 gevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl 198
                    +ev ++ +        d ea+ +a++        t+v++ esp+NP  ++a+l  l kl   a+++ +ll+vD  +a+ + +++
     EGE27059.1 140 VEVSYVDCF-------DNEAWAAAIRP------NTRVLYCESPSNPLAQIADLRYLSKL---AHAHDALLIVDNCFATPAIQKP 207
                    *******66.......**********9......89************************...*************998887754 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   4.7e-11   1.4e-07      15     204 ..      65     255 ..      52     324 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 4.7e-11
                      TSS-SSS..SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHH....HHTT-EEEEE-B-TTTSSB-GG CS
  DegT_DnrJ_EryC1  15 ksgwlts..gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanav....lelgakpvfvDvdpdtynidpa 102
                      k++ +++  +p+v++FE+++a   + + a+a++sG  A++ +  a  +++gd ++ ++  F ++++      +  g ++ +vD      + d +
       EGE27059.1  65 KGNVYSRhtNPTVRAFERRLALLENGERAVATASGMGAILTMCLA-YLKAGDHLLCAKQLFGSSIALFdgyfQGFGVEVSYVD------CFDNE 151
                      5566665679***************************98765555.45556********999998754111145555555555......78*** PP

                      GCGGG--TTEEEEE...EB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS.-SSS..-EEEEESTHHH CS
  DegT_DnrJ_EryC1 103 aieaaitertkaIl...pVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnl.ttGe..GGavvtndeel 190
                      a +aai ++t+      p + + q+ad+  l ++a++h+  +i D + A  a  k  ++Ga  d+ + S  +tK +   G   GGa+v +de +
       EGE27059.1 152 AWAAAIRPNTRVLYcesPSNPLAQIADLRYLSKLAHAHDALLIVDNCFATPAIQKPLELGA--DVVIHS--ATKYIdGQGRilGGALVGRDELM 241
                      **********99864448999*****************************99988777774..555555..78888777755589999999888 PP

                      HHHHHHHHBTTCEC CS
  DegT_DnrJ_EryC1 191 aekarvlrnhGlkr 204
                      ++   v r  G++ 
       EGE27059.1 242 EKAFGVVRTGGISL 255
                      88888888888775 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   3.6e-11   1.1e-07      47     222 ..      79     245 ..      45     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 3.6e-11
                  HHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEE CS
  Aminotran_5  47 earekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklva 144
                  + + ++a l n e    +   sG + ai ++ l++   lk+gd+ +  +    + +       +  g++v ++        d ++ +++++++t++++
   EGE27059.1  79 AFERRLALLENGER--AVATASGMG-AILTMCLAY---LKAGDHLLCAKQLFGSSIALFDGYFQGFGVEVSYVDC-----FDNEAWAAAIRPNTRVLY 165
                  55555555555553..333333333.555555555...8888888888888888886666666666666666666.....78889999********** PP

                  EESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSSTT.-..EEEEEEHHHHHTS. CS
  Aminotran_5 145 ithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllgPtG.i..Gvlyvrkellekle 222
                      sn +  i ++  + kla++++al++vD + a + i+  + +lg+D++  s+ K++  +G i  G+l++r+el ek+ 
   EGE27059.1 166 CESPSNPLAQIADLRYLSKLAHAHDALLIVDNCFATPAIQKPL-ELGADVVIHSATKYIDGQGrIlgGALVGRDELMEKAF 245
                  ***************************************9877.7************99999952669********99984 PP

>> Met_gamma_lyase  Methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.5e-09   1.3e-05     167     255 ..     165     253 ..      89     265 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4.5e-09
  Met_gamma_lyase 167 yserkslsieeieeiiklvk.einedvivfvdncyGefveekePtevGadliaGsliknpGGgiaktGGyiaGkeelveaasyrltaPGi 255
                      y e +s  +++i+++  l k +  +d ++ vdnc+      + P e+Gad++  s  k + G     GG ++G++el+e+a   + + Gi
       EGE27059.1 165 YCESPSNPLAQIADLRYLSKlAHAHDALLIVDNCFATP-AIQKPLELGADVVIHSATKYIDGQGRILGGALVGRDELMEKAFGVVRTGGI 253
                      555666666666666555552345678999*****975.5789*************************************9877777777 PP

>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.1e-07   0.00063     137     259 ..      96     221 ..      91     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHHHHH-SSS.--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-.....S-EEEEEEEES.-TTSB----HHHHHHHHHTT-EEE CS
       GDC-P 137 tAaaEAvllaaraskkk.akkvvvdkkvhpqtlevlktrakglgieivevdlteekvtd..kekevagvlvqyp.nteGriedlkelvekakkkkslvv 231
                 tA++  ++l++  +  k  ++++ +k+++  +++    + +g+g+e+  vd+ ++++     + ++  +    p n   +i dl+ l++ a+ +++l++
  EGE27059.1  96 TASGMGAILTMCLAYLKaGDHLLCAKQLFGSSIALFDGYFQGFGVEVSYVDCFDNEAWAaaIRPNTRVLYCESPsNPLAQIADLRYLSKLAHAHDALLI 194
                 5555544444443333326999******************************9988776445677777777777355799***************9998 PP

                 EEE-TTGGGTB--HHHHT-SEEEEE-TT CS
       GDC-P 232 vaadllaLtllkpPgelgaDivvGsaqr 259
                 v  + +a   ++ P elgaD+v+ sa +
  EGE27059.1 195 V-DNCFATPAIQKPLELGADVVIHSATK 221
                 7.5899*****************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3196.86
//
Query:       EGE27060.1  [L=376]
Description: ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-52  177.5   1.8      5e-52  177.1   1.8    1.1  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain
  ------ inclusion threshold ------
       0.13   12.4   1.0       0.28   11.4   1.0    1.6  1  Gla             Vitamin K-dependent carboxylation/gamma-carbo


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.1   1.8   5.6e-56     5e-52       7     279 .]      32     332 ..      28     332 .. 0.93

  Alignments for each domain:
  == domain 1  score: 177.1 bits;  conditional E-value: 5.6e-56
                     -SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   7 ikypeiwelykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniHaesYsl 101
                      k+p + +l +k+ + fW pee+d+skD  d+  +Ls +e++++ ++l+  +lld+i++      ll+ v ipe +  + +  + E+iH++sY +
      EGE27060.1  32 QKHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFA-ELSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTH 125
                     58999***************************9.5**************************9999****************************** PP

                     HHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSC............................HHHHHHHHHHHHHHHCCCHHHHHHH CS
  Ribonuc_red_sm 102 lletlvkdekekdelfnaieenpalqkkaewikkwyeskkde............................ekfaerlvafallegilfysgFaai 168
                     ++  +v+d+    ++f+ i +n+++ ++a  i k+y++ +                              ++++  +va  +le i fy +Fa  
      EGE27060.1 126 IIRNVVNDPS---KIFEDIVDNEYILERASDIAKYYDDLH-LcaklydlhgegvyqidgqsvevtlpklkKQLYLCIVAVNVLEAIRFYVSFACS 216
                     ******7776...5***********************877.1469***********************9888888999999************** PP

                     HHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS.HHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHTTT..BTTCHHHHHHHH CS
  Ribonuc_red_sm 169 lwlkkrgllpglaeiielilrDeglHtdfagllfkelkeen.elenk.......eleeeveelikeavelEkefitdalpv.ellglnkedvkqY 254
                     + +++r+ ++g a+ii++i+rDe+lH++    +++ +++ + +             +ee  e++k a e Ek++++++++  +++gln++ ++qY
      EGE27060.1 217 FAFAERKVMEGNAKIIKMIARDEALHLNGTQHMINLMRQGRdD---PdmvaiaeACQEEAIEIFKSAAEQEKAWANYLFKDgSMIGLNRDILCQY 308
                     *****************************99999999776432...133444449************************8879************ PP

                     HHHHHHHHHHCTT---SS-TT---C CS
  Ribonuc_red_sm 255 ieyvadrllmnlgyeklYnveeenP 279
                     ie++++ ++ ++g+++++++ ++nP
      EGE27060.1 309 IEFITNTRMSAIGLPAIFET-KTNP 332
                     *******************9.6898 PP

>> Gla  Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.0   3.2e-05      0.28      17      40 ..     268     290 ..     265     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.2e-05
                 T-SSSHHHHSC-SSCTTTTTSSSS CS
         Gla  17 iCsyEEArEiFeddektkeFWkkY 40 
                  C  EEA EiF++  ++++ W++Y
  EGE27060.1 268 AC-QEEAIEIFKSAAEQEKAWANY 290
                 55.59******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3158.06
//
Query:       EGE27061.1  [L=103]
Description: 2Fe-2S ferredoxin [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-09   35.4   1.5    1.1e-08   34.9   1.5    1.2  1  Fer2      2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
       0.11   12.6   1.8       0.14   12.1   1.8    1.5  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   1.5   1.2e-12   1.1e-08      12      76 ..      13      75 ..       5      77 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.2e-12
                EETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE...CTT..SSSSTHHHHHTTEEEEGGGSE CS
        Fer2 12 vadgettlldaaeenggidipysCggggCgtClvevlegev...qsd..etelegeeldegklrlaCqti 76
                  ++et lld + + +   ++y+C++g CgtC+ +vl+ +      +   + l ++e      +laC++ 
  EGE27061.1 13 LHENET-LLDGMIRTEHKKVHYECRQGYCGTCRMKVLATTGsitLVKkpLATLADDE------ILACCCT 75
                457888.999999988*********************98886552223444444444......6999986 PP

>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.8   1.6e-05      0.14      49      65 ..      32      48 ..      10      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.6e-05
      Fer2_3 49 rasCregiCGscavain 65
                +++Cr+g CG+c +++ 
  EGE27061.1 32 HYECRQGYCGTCRMKVL 48
                579***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 914.52
//
Query:       EGE27062.1  [L=281]
Description: hypothetical protein EA1_04430 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2156.39
//
Query:       EGE27063.1  [L=400]
Description: carboxynorspermidine decarboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-10   41.6   0.0    1.2e-10   41.4   0.0    1.4  1  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina
    0.00025   20.5   0.0    0.00051   19.5   0.0    1.5  1  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
  ------ inclusion threshold ------
      0.078   13.1   0.0        1.4    9.0   0.0    2.3  2  Invas_SpaK       Invasion protein B family


Domain annotation for each model (and alignments):
>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   2.1e-14   1.2e-10       6      97 ..     257     356 ..      24     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.1e-14
                      GGEEEEEEEEEEEEETCEEEEEES--TTT.S-HHHHCTT-S-E.ESBT..........T-SCEEC.EEEEEEEE-SSSSTT-EEEEEEEEEE.- CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
  Orn_DAP_Arg_deC   6 eagvLvtrViavkesekkkfvivdaGmnd.llrpalygsfhei.pvke..........eeaekeeeeeeevdvvGptCesgDvlakdrelpe.l 86 
                      +  vLvt+V++v  ++k   ++vda++++ +l   +y++  +   v+e          +    ++++e++v+++G++C +gD+++ d++l+e l
       EGE27063.1 257 QGAVLVTSVLDVMYNNK-PLAVVDASIEAhMLDLLIYRQSSPLaYVNEttyditgadfD---GTSADETSVRIYGKSCLAGDIFG-DYTLNEpL 345
                      5689*********9865.9********87345555688886664444466777664432...44556789***************.9999999* PP

                      -TT-EEEESS- CS
                      xxxxxxxxxxx RF
  Orn_DAP_Arg_deC  87 evGdllafeda 97 
                      ++Gd +af +a
       EGE27063.1 346 KIGDKVAFGNA 356
                      ********997 PP

>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   8.5e-08   0.00051      20     245 ..      49     254 ..      30     256 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.5e-08
                    EEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHH.CTTTGGGEEEEESS--HHHHHHHHHCTHTEEEESSHHHHHHHHHHHCC..EEEEEEEE CS
  Orn_Arg_deC_N  20 vfYavKansdlavlellaelGlgldcaSkaElelvla.agvsperiifanpckqreelryalekgvkvvtvdnveeleklaklape..akvllRik 112
                       a K++ ++ v e+++    g  ++S +E+ l  + +g++++     + +    e++++l    +++ +++ ++l++  +la +   +v lR +
     EGE27063.1  49 ALLALKCFATWGVFESMQPYLHGTTSSSLKEVRLGKEcFGGETH---AYSVAYADHEIKEVLGY-CDKIIFNSINQLKRFGQLAHDknIPVGLRLN 140
                    56688999999999999999999999999999877664444433...33344445677777754.4568999*********999886788999999 PP

                    -SCCSSSSTCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHHHHT---SEEE--S-BS-HCSTT CS
  Orn_Arg_deC_N 113 tdvsaatcelistggessKFGaaleeavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdelaelGvklkiLdvGGGfgveyeee 208
                    ++ s+++  +   +     F    e++ve ++++a     q++Gv +H     +d+eaf + + ++ + f    el + l+ ++ GGG   +y ++
     EGE27063.1 141 PQTSNSSFII---ADPARPFSRLGEHDVESIMAIAD----QITGVMIHNNCENTDFEAFSQSLTDIENRFG---ELFHRLEWISFGGGI--HYIDQ 224
                    9888777777...44455555555577899998887....69***********************999776...56789********98..66654 PP

                    SSSSTHHHHHHHHHHHHHHHHHTSSS-EEEE--SHHH CS
  Orn_Arg_deC_N 209 eeplkleeiaekirealeeafpgdkevtiiaEpGRal 245
                    + pl+      k +++l+++ ++  +v+i +EpG a 
     EGE27063.1 225 NYPLD------KFINRLKNF-SETYGVQIYLEPGEAS 254
                    45555......566666554.45778********876 PP

>> Invas_SpaK  Invasion protein B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.056   3.4e+02      39      72 ..     158     192 ..     146     198 .. 0.88
   2 ?    9.0   0.0   0.00024       1.4      22      42 ..     371     391 ..     367     399 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.056
                 EE--TTHHHHHHHCHHHHHHHHCT-.-TTBGGGS- CS
  Invas_SpaK  39 sslaededaaLqqrsanlLklllea.aeyaitgkl 72 
                 s+l+e++ + + + + ++  +++++ +e+  ++ +
  EGE27063.1 158 SRLGEHDVESIMAIADQITGVMIHNnCENTDFEAF 192
                 7899*******************999*99988766 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00024
                 TS--EEEEEETTEEEEEEE-- CS
  Invas_SpaK  22 dkPsIiistqddevwlWssla 42 
                 d+PsI+i++qd e+++  +++
  EGE27063.1 371 DMPSIVIIRQDGEIMIQRQFD 391
                 8**************977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3003.40
//
Query:       EGE27064.1  [L=416]
Description: saccharopine dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-36  123.2   0.4    1.3e-35  122.5   0.4    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    1.2e-26   94.4   0.0    1.8e-26   93.8   0.0    1.3  1  Sacchrp_dh_C     Saccharopine dehydrogenase C-terminal domain
    8.4e-05   22.7   0.5    0.00014   21.9   0.5    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.007   16.4   0.2      0.019   15.0   0.2    1.7  1  NDUF_B12         NADH-ubiquinone oxidoreductase B12 subunit f
  ------ inclusion threshold ------
      0.012   16.2   0.6      0.023   15.3   0.6    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.037   13.8   0.2        1.6    8.5   0.0    3.0  3  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
      0.044   12.4   0.4      0.061   12.0   0.4    1.1  1  Staph_opine_DH   Staphylopine dehydrogenase
       0.19   12.4   3.5        1.8    9.3   3.5    2.6  1  PglD_N           PglD N-terminal domain


Domain annotation for each model (and alignments):
>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5   0.4   5.7e-39   1.3e-35       1     130 []       7     148 ..       7     148 .. 0.99

  Alignments for each domain:
  == domain 1  score: 122.5 bits;  conditional E-value: 5.7e-39
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.......TTTCEEEEE--TTTHHHHHHHHHTTS..SEEEE-SSGGGHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka.......lgvrfeaialdaenyeavLaallkeg..dlvvnlsppissldv 85 
                      vliiGaG+v+q+va+++a  +d+++ei++a+r+ +k++a+a+++       +   ++++a+da+++ a +a+l++++  d+v+n+  p+ +++v
       EGE27064.1   7 VLIIGAGGVAQVVAHKCAMANDIFGEIHIASRKIDKCQAIAKNVakkgsfkRDAVLHTHAVDAMDHHA-VAELIRKTntDIVINVGSPFINMSV 99 
                      89***************************************999******99999*************.************************* PP

                      HHHHHHHT-EEEESS-....BCGCCSCHCCSHHHHHTHHHHHHCTSEEE CS
  Sacchrp_dh_NADP  86 lkaCietgvhyvdtsi....skeertnyalreavlklkekakeagvtav 130
                      ++aCietg+hy+dt+i     k ++t+++++++ +k +e++k+ag+ta+
       EGE27064.1 100 MDACIETGTHYLDTAIyedpHKICETPPWYENYEWKKREAFKKAGATAI 148
                      ***********************************************98 PP

>> Sacchrp_dh_C  Saccharopine dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   8.2e-30   1.8e-26       1     265 []     152     400 ..     152     400 .. 0.82

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 8.2e-30
                   BTTTBHHHHHH...........HHHHHCCCHTTBECCCCCCCCCCCCECCCCESTTCEEESS-HHHHHHHCCSEEEEEETTEEEECTCCCSGCC.TC CS
  Sacchrp_dh_C   1 GldPGidhlla...........mkaidevkakggkiesflsycgglpapeasdnplgYkfsWspegvlreltnpakvlengqvkevpgsellkgakk 86 
                   G+dPG+++ +a           ++ id        i  + +  +g   ++++         ++pe+++re+t  +  ++n+q ++     +++    
    EGE27064.1 152 GFDPGVVNAYArlgveyfdkdsVTDID--------IIDINAGSHGKY-FATN---------FDPEINFREFTGVVYSWQNSQWQTNQ---MFE---- 223
                   9**********7774444444422222........223444447777.7777.........***********99999*****88877...443.... PP

                   EEECCCCCEECTTECEEECTHCHHHHHHC.SCSEEEEEEEE.EH.HHHHHHHHHH...TTT--SCECCCCCCHHSTT.C.EHHHHHHHHCCHHCCCC CS
  Sacchrp_dh_C  87 piyilpglslegypnrdslpyeelyglpeaktlfrgtlryp.gf.sellkslkel...Gllseepkeealkawlseg.e.spldvlaalLekklale 176
                    ++  + l  +g+ n     + el +l   k+l  + +r++ gf +++++ +  l   Gllse+p    +++   eg e +pl+v++a+L+++++l+
    EGE27064.1 224 -VKRTDDLPIVGIQNSYLSGHDELHSLH--KNLNVPNIRFWmGFgDHYINVFGVLknlGLLSEQP----ITT--AEGlEvVPLKVVKAVLPNPASLA 311
                   .22223345667777777**********..********************99999999******9....444..367899***************** PP

                   TTEEEEEEEEEEEEEETTSEEEEEEEEEEEEE.EHH....SSSHHHHHHHHHHHHHHHHHHTTSCTSSEEEEGGGS.CHHHHHHHHHHHHHCT- CS
  Sacchrp_dh_C 177 pgerDlvvlqhefgiesdgkkkekktstlvgy.dee....gssamaktvGvpaaiaaklildgkikkrGvvtpeelvdpeiyeplleeLekeGi 265
                   ++++  +   +++++e+dg+++e   +++++  d +    gs+ +++t Gvp + aa li++g+ + + +v++eel d +   p+++ L+ +G+
    EGE27064.1 312 EHYTGKTCIGNKVKGEKDGETQEIFIYNIIDHeD-AyaevGSQGISYTAGVPPVAAALLIASGEWNVGTMVNVEEL-DAR---PFINLLNTMGL 400
                   *************9999999866666****7433.14568***********************9999*********.553...*******9885 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.5   6.3e-08   0.00014      11      59 ..       3      53 ..       1      79 [. 0.86

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6.3e-08
                  TT-EEEEES-SHHHHHHHH..HHHCCT-CEEEEEESSHHHHHHHHHHHT.E CS
  Shikimate_DH 11 kekkvlliGaGemaelvak..hLlakgvkkvvvaNRtlerakelaeelkge 59
                  + k+vl+iGaG +a+ va+  ++++  + ++ +a R +++ +++a+++ ++
    EGE27064.1  3 QAKNVLIIGAGGVAQVVAHkcAMANDIFGEIHIASRKIDKCQAIAKNVAKK 53
                  5789**************8334778899******************99654 PP

>> NDUF_B12  NADH-ubiquinone oxidoreductase B12 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   8.6e-06     0.019       3      46 ..     127     169 ..     126     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.6e-06
    NDUF_B12   3 PWlRnEaWRykgqfskakrfkraffpGfglavaafaaavgyEhf 46 
                 PW  n+ W++ ++f+ka     +   Gf  +v+ + a +g+E+f
  EGE27064.1 127 PWYENYEWKKREAFKKAGATAILG-VGFDPGVVNAYARLGVEYF 169
                 9***************99888766.9*****************9 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.6     1e-05     0.023       2      62 ..       7      64 ..       6      93 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1e-05
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH- CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeea 62
                   + iiGaG +++ +a++++ a+    ei +a sr+ +k +++a+++  k   + + +a+ ++
     EGE27064.1  7 VLIIGAGGVAQVVAHKCAMANDIFGEIHIA-SRKIDKCQAIAKNVAKKG--SFKRDAVLHT 64
                   569*****************99999***88.************987332..2345555432 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.38   8.5e+02       9      28 ..       2      21 ..       1      27 [. 0.77
   2 ?    8.5   0.0    0.0007       1.6      43      92 ..      47      98 ..      41     117 .. 0.87
   3 ?    0.7   0.0      0.18     4e+02      18      49 ..     233     264 ..     230     281 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.38
                  HH-SSEEEEE-CHHCHTTGH CS
  TPP_enzyme_M  9 kaakrpvilvGggvarsgas 28
                  ++ak+++i+  ggva+  a+
    EGE27064.1  2 SQAKNVLIIGAGGVAQVVAH 21
                  78999999999999865554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0007
                  EEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH..-SEEEEES-SSSTCC CS
  TPP_enzyme_M 43 vttlmgkgvipedhplylgmlglhgskaanealee..aDlvlalGarfddir 92
                  +  ++ kg++++d  l+ + ++ + + a+ e++++  +D+v+++G+ f +++
    EGE27064.1 47 AKNVAKKGSFKRDAVLHTHAVDAMDHHAVAELIRKtnTDIVINVGSPFINMS 98
                  667889***************************65559********997765 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.18
                   E-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGT CS
  TPP_enzyme_M  18 vGggvarsgaseelrelaeklgiPvvttlmgk 49 
                   vG + ++   ++el++l ++l++P +  +mg 
    EGE27064.1 233 VGIQNSYLSGHDELHSLHKNLNVPNIRFWMGF 264
                   67777777899*************99999985 PP

>> Staph_opine_DH  Staphylopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   2.7e-05     0.061       1      76 [.       5      82 ..       5      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
                    -SEEEES-SHHHHHHHHHHHHH--..SSEEEE--SSHHHHHHHHHHHTT--EEEEE..-GGGGGG-EEE--SEEES-G CS
  Staph_opine_DH  1 krvLllGtGpaaiqlavllkkkle..arlgiagresvrserlfealarsaqlvrvsvqnekhralegevtidevfkdl 76
                    k+vL++G+G +a  +a ++    +  +++ ia+r+  + +++++ +a+++++ r  v + ++  +  +++++e+++++
      EGE27064.1  5 KNVLIIGAGGVAQVVAHKCAMANDifGEIHIASRKIDKCQAIAKNVAKKGSFKRDAVLHTHAVDAMDHHAVAELIRKT 82
                    58**********9999988765542289***********************999999888888888888888887765 PP

>> PglD_N  PglD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.5   0.00078       1.8       1      19 [.       6      24 ..       6     102 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00078
      PglD_N  1 kivIiGaGGhgkvvadiie 19
                +++IiGaGG ++vva  + 
  EGE27064.1  6 NVLIIGAGGVAQVVAHKCA 24
                799***********75443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3022.32
//
Query:       EGE27065.1  [L=198]
Description: putative 6-pyruvoyl tetrahydrobiopterin synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-27   95.5   0.3    2.7e-27   95.2   0.3    1.1  1  PTPS      6-pyruvoyl tetrahydropterin synthase


Domain annotation for each model (and alignments):
>> PTPS  6-pyruvoyl tetrahydropterin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.3   1.5e-31   2.7e-27       2     121 ..       3     145 ..       2     147 .. 0.92

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 1.5e-31
                 EEEEEEEEEEE--T.TTTGGGGS.TEEEEEEEEEEEEEC-STCTTBSS-HHHHHHHHHHHHHCTTTEEC..CCC-CCHHCCS.............--HH CS
        PTPS   2 iskefeFdaaHrlr.khegkcrn.lHGHnykvevtvegeeldetgmvvdfgelkealkeileelDhkfl..naddpeleell............spTaE 84 
                 i+k f+F+ aH++r +++ +c++ +HGH+y+ve+ +e+ +ld+ +mv+dfg lk+++k+i++++Dh++   + dd  + +++            sp+aE
  EGE27065.1   3 IRKLFKFENAHIVRnCSSDRCKRsIHGHSYEVELILEAHRLDHGQMVYDFGLLKHHIKDIIDSFDHAITfwDQDDTRYIQACkdfsarwislpvSPSAE 101
                 8999**********88889**9967*******************************************97445555555555***************** PP

                 HHHHHHHHHHHHHH.......GCCCGCEEEEEEEEETTEEEEEE CS
        PTPS  85 nlaklifeelkerl.......qekevklskvrvwEtpnswaeyr 121
                 +++++if + ++ l        e+++++++v v+Et++ +a++ 
  EGE27065.1 102 QFSRVIFFWADAILnqtvmqnGEQDISVYSVIVHETATGYAQCF 145
                 ************999999*99999****************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1544.72
//
Query:       EGE27066.1  [L=148]
Description: putative ATPase or kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-38  131.5   0.0    1.9e-38  131.3   0.0    1.0  1  TsaE        Threonylcarbamoyl adenosine biosynthesis protein 
    0.00044   20.7   0.0    0.00058   20.3   0.0    1.2  1  AAA_16      AAA ATPase domain
     0.0091   15.6   0.0      0.015   14.9   0.0    1.3  1  cobW        CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
       0.02   14.6   0.0      0.041   13.6   0.0    1.5  1  AAA_29      P-loop containing region of AAA domain
      0.057   12.7   0.1      0.079   12.2   0.1    1.2  1  Zeta_toxin  Zeta toxin
       0.11   12.4   0.0       0.19   11.6   0.0    1.4  1  NACHT       NACHT domain
       0.18   10.9   0.0       0.27   10.4   0.0    1.3  1  NB-ARC      NB-ARC domain


Domain annotation for each model (and alignments):
>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.0   7.5e-42   1.9e-38       2     120 ..       9     134 ..       8     140 .. 0.92

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 7.5e-42
                 SSHHHHHHHHHHHHHCH.TEEEEEEESTTSSHHHHHHHHHHHTT--.----TTTTSEEEEEE..SS....EEEEE-TT-SSTHHHHHCTTCCCCS.TSC CS
        TsaE   2 kseeetealgkklakal.gdvilLeGdLGaGKTtlvrglakalgve.evkSPTFtlveeYelekeg....lyHfDlYRledeeeleelgleeyle.eea 93 
                 +se++t+al++kla++  +  + L+GdLGaGKTtlvr +++a+g++ +vkSPT+tlve+Y+ + +g    +yH+DlYRl+d+eel+ +g+ ey++  ++
  EGE27066.1   9 HSEADTQALAEKLAQMNlSGSVWLSGDLGAGKTTLVRYWLQAMGHQgAVKSPTYTLVEPYQINLQGrlkpVYHADLYRLNDPEELDFIGFYEYFDePNS 107
                 799***********9556778****************************************988889***************************96669 PP

                 EEEEETGGGGCCCS-S-CEEEEEEEET CS
        TsaE  94 vvlvEWpekleellpeedleieleeee 120
                 +v++EW+++++++lp+ d++i++ ++ 
  EGE27066.1 108 LVIIEWASRASQVLPKPDYHIDIIRHL 134
                 ****************99999997754 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.3e-07   0.00058       7      54 ..      12      57 ..       9      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.3e-07
      AAA_16  7 eeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggi 54
                +++++L++ l + + +  ++v lsG+ G GK++lvr +l+a+  +g++
  EGE27066.1 12 ADTQALAEKLAQMNLS--GSVWLSGDLGAGKTTLVRYWLQAMGHQGAV 57
                6677787777766555..79*******************999888533 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     6e-06     0.015       4      24 ..      31      51 ..      29      58 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6e-06
                EEEESTTCCHHHHHHHHHCT- CS
        cobW  4 vltGflGsGKTtLlnhllenr 24
                 l+G lG+GKTtL++  l+  
  EGE27066.1 31 WLSGDLGAGKTTLVRYWLQAM 51
                689************999763 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.6e-05     0.041      15      39 ..      20      44 ..      14      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                + ++++l+g++ l+G+ G+GK+Tl+
  EGE27066.1 20 KLAQMNLSGSVWLSGDLGAGKTTLV 44
                56788899***************97 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.1e-05     0.079      19      44 ..      30      55 ..      14      59 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
  Zeta_toxin 19 illgGqpGAGKselaellkdelerqg 44
                + l+G  GAGK++l ++  +++++qg
  EGE27066.1 30 VWLSGDLGAGKTTLVRYWLQAMGHQG 55
                789*******************8555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.4e-05      0.19       3      25 ..      30      52 ..      29      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.4e-05
                EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawa 25
                v+l G+ G GKTtL++   +a+ 
  EGE27066.1 30 VWLSGDLGAGKTTLVRYWLQAMG 52
                89*************97666655 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00011      0.27       2      38 ..      11      45 ..      10      59 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                HHHHHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHH CS
      NB-ARC  2 eksvekviekLlekdelqslvvalvGmgGvGKttlak 38
                e++ ++++ekL +++ ++   v l+G  G GKttl++
  EGE27066.1 11 EADTQALAEKLAQMNLSG--SVWLSGDLGAGKTTLVR 45
                5678899*****999999..88899**********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1089.45
//
Query:       EGE27067.1  [L=369]
Description: tRNA delta(2)-isopentenylpyrophosphate transferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-71  239.9   1.4      4e-71  239.4   1.4    1.1  1  IPPT           IPP transferase
    0.00029   20.3   0.1      0.031   13.7   0.0    2.3  2  IPT            Isopentenyl transferase
  ------ inclusion threshold ------
      0.083   13.2   0.0       0.17   12.1   0.0    1.5  1  baeRF_family3  Bacterial archaeo-eukaryotic release factor fa


Domain annotation for each model (and alignments):
>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.4   1.4   6.7e-75     4e-71       2     224 ..      48     341 ..      47     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: 239.4 bits;  conditional E-value: 6.7e-75
                 TBTT-HTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTG-S--B--HHHHHHHHHHHHHSHHHH CS
        IPPT   2 vYrgmdIgTakptaeeragvphhlidildpdeeysvadFqkdalkaieeilargkipilvGGTglYikallegldelpeadeelraeleeeaeeeglea 100
                 +Y+gmdIgTakpt++e++++ph+l+dil+p ++ysva+F++d++++i ei+ar+kipilvGGT++Y+ all+g++ +p++++ +r++++   +e g++a
  EGE27067.1  48 IYEGMDIGTAKPTKDELNAYPHYLVDILSPAQSYSVANFVQDVERLIGEIHARNKIPILVGGTMMYYMALLDGISAVPQTNPMIRNQVKIWHDEMGNKA 146
                 9*************************************************************************889**********9776777899** PP

                 HHHHHHHC-HHHHTTS-TT-HHHHHHHHHHHHHHSS-HH................ECEEEEEECSHHHHHHHHHHHHHHHHHTTHHHHHHHHHH..... CS
        IPPT 101 lheelkevdpeaaakihpndrqRiiRalevyeetgkpls................ellviglesdreelyeridkRvdemleaGlleEveklla..... 178
                 l+++lk+ dp+  +k++ +d+qRi+Ra+ev+ +tgkpls                +++ i+++ dr++l+eri++R++ m+++G+l+Ev  l++     
  EGE27067.1 147 LYDYLKQHDPVICQKLKVTDTQRITRAVEVHLQTGKPLShwqstpkmaishhpkwHWYAIIVMPDRAWLHERIEQRLQVMWADGFLQEVIGLIKqhpnl 245
                 ***************************************8888888888877776556666658*****************************877777 PP

                 ....CCCCSTTSHHHHHHH..............................................TTSS-HHHHHHHHHHHHHHHHHHHHHHHHTT CS
        IPPT 179 ....kalqaigykelleyl..............................................egelsleeaieklkaatrqyaKrQltWfrkk 224
                     +al+a+gy+++l+yl                                              + +l  +++ +k   atrq+aKrQ+tW+++ 
  EGE27067.1 246 tadmPALRAVGYRQVLDYLiaidhacvaahlglkpyyhaqkskqnqeinsihqdfnkkskktmtnTRDLACQDMKNKALYATRQLAKRQYTWLKQL 341
                 766447*********************************9999999888888887766655443323567889********************965 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.2e-06     0.031       3      56 ..      14      67 ..      12     111 .. 0.88
   2 !    4.5   0.1    0.0034        20     122     211 ..     206     300 ..     192     320 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-06
         IPT  3 vylifGatttGKtaeaiklaketgapvivlDRvqcyselavgsGrpleeelegt 56
                v  ++ +t++GKt+ a kl  +  + +i++D    y+ + +g+ +p+++el+  
  EGE27067.1 14 VVCLMSPTASGKTDLAFKLYDTGRFELISVDSALIYEGMDIGTAKPTKDELNAY 67
                556789********************************************9865 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0034
         IPT 122 rlrlpdedvflakakkRvrqmlrpeeegaslldElaelwkep....karailedidGyryildy.......arkkkvtidklanldadqeeeliegiae 209
                 ++ +pd++   ++  +R + m +      ++l+E+  l k++    +  ++l    Gyr++ldy       + + ++ ++   + +++++++ i++i +
  EGE27067.1 206 IIVMPDRAWLHERIEQRLQVMWA-----DGFLQEVIGLIKQHpnltADMPALRA-VGYRQVLDYliaidhaCVAAHLGLKPYYHAQKSKQNQEINSIHQ 298
                 45566666555555555555554.....48888888887765211133445555.5*******954444444444555555555555555566666666 PP

         IPT 210 ey 211
                 ++
  EGE27067.1 299 DF 300
                 55 PP

>> baeRF_family3  Bacterial archaeo-eukaryotic release factor family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.8e-05      0.17      60     121 ..      82     147 ..      58     176 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.8e-05
  baeRF_family3  60 dtrrFlreVdkalqevlsesplplvlaGve.enlslfrevsknp...sliegglegnpaelsaeeL 121
                     + +F ++V + ++e++++++ p+++ G+  ++++l++ +s +p    +i   +++ ++e+ +++L
     EGE27067.1  82 SVANFVQDVERLIGEIHARNKIPILVGGTMmYYMALLDGISAVPqtnPMIRNQVKIWHDEMGNKAL 147
                    5789***********************986377899999999997776788888888877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1255  (0.0699983); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2892.04
//
Query:       EGE27068.1  [L=210]
Description: RNA chaperone Hfq [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-30  104.1   0.1    3.1e-30  103.6   0.1    1.2  1  Hfq       Hfq protein
  ------ inclusion threshold ------
      0.023   14.4   0.0      0.035   13.8   0.0    1.3  1  LSM       LSM domain


Domain annotation for each model (and alignments):
>> Hfq  Hfq protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.1   3.5e-34   3.1e-30       1      63 [.       7      68 ..       7      69 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 3.5e-34
                HHHHHHHHHHHCT-EEEEEETTS-EEEEEEEEE-SSEEEEEETTEEEEEEGGGEEEEEESS-- CS
         Hfq  1 lQdafLnqlrkekipvtifLvnGiklkGviksfDnftvlLesdgkqqlvYKhaistivparpv 63
                lQd fLn+lrk++ipv+ifLvnGikl+G+i+sfD+++vlL+++   q+vYKhaist+vp+r++
  EGE27068.1  7 LQDPFLNALRKDRIPVSIFLVNGIKLQGQIESFDQYVVLLKNT-VSQMVYKHAISTVVPTRNP 68
                7***************************************666.688************9976 PP

>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.9e-06     0.035      10      32 ..      21      43 ..      10      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-06
                EEEEEETTSEEEEEEEEEEETTS CS
         LSM 10 kvtvelkngrelrGtLkgfDqfm 32
                 v + l ng +l G++++fDq++
  EGE27068.1 21 PVSIFLVNGIKLQGQIESFDQYV 43
                6899*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1668.35
//
Query:       EGE27069.1  [L=339]
Description: arabinose 5-phosphate isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-28   97.8   0.0    8.6e-28   96.8   0.0    1.5  1  SIS       SIS domain
    3.8e-20   72.1   3.8    5.5e-09   36.3   0.4    3.4  3  CBS       CBS domain
  ------ inclusion threshold ------
       0.09   12.7   0.2       0.25   11.3   0.2    1.7  1  DUF3659   Protein of unknown function (DUF3659)
       0.11   12.5   0.8        0.8    9.7   0.1    2.3  2  SIS_2     SIS domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   1.9e-31   8.6e-28       2     131 .]      59     190 ..      58     190 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 1.9e-31
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSE CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadl 100
                 L ++ r++v+G+G+s++i++++a++++++g++++++++ ++ + + l+++ ++d++i+is sge+ +  ++++++k+ + ++i+I   k  +l r+ad+
  EGE27069.1  59 LNCSGRVVVTGMGKSGHIGRKIAATFASTGTPAFFMHPGEAGHGD-LGMLVQGDVLIAISNSGESDEIRMLLPVVKQLNIPLISISRDKRGILPRSADI 156
                 88999************************************6666.***************************************************** PP

                 EEEEEEECHC...SSSHCHHHHHHHHHHHHHHHH CS
         SIS 101 alyinaepet...lvastksltaqlaaldalava 131
                 al++  ++e+   ++a+t+s+ta+la++dalava
  EGE27069.1 157 ALTLGLSEEAcplGLAPTSSTTATLALGDALAVA 190
                 *******************************985 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.066   2.9e+02      13      38 ..      21      46 ..      18      52 .. 0.80
   2 !   36.3   0.4   1.2e-12   5.5e-09       1      56 [.     219     275 ..     219     276 .. 0.87
   3 !   32.9   0.0   1.4e-11   6.4e-08       4      54 ..     287     336 ..     282     338 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.066
                ETTSBHHHHHHHHHHHTSSEE.EEEET CS
         CBS 13 ppdttleealelmrekgvsrl.PVVde 38
                 p++ + +a++ + +++ ++l + +de
  EGE27069.1 21 APSDYIQDAIDAI-RTEQRALeLLIDE 46
                799**********.7778888666654 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 1.2e-12
                 HHHHSBS.SCEEEETTSBHHHHHHHHHHHTSSEEEE.EETTTBEEEEEEHHHHHHHHH CS
         CBS   1 Vgdimtr.dvvtvppdttleealelmrekgvsrlPV.VdedgklvGivtlrDllrall 56 
                 V+dim++  +++v+ +++l e l  m++ ++ +l V Vd+dgk+vGi+t+ Dl r+l+
  EGE27069.1 219 VSDIMHTdHLPVVHHQSSLNETLLVMTSGRL-GLAVvVDDDGKVVGIFTDGDLRRKLA 275
                 89998885777***************87777.775527*****************997 PP

  == domain 3  score: 32.9 bits;  conditional E-value: 1.4e-11
                 HSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHH CS
         CBS   4 imtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllra 54 
                 +mt+ + +v+ ++  ++al lm e+++s+l+V+ +d +l+G+++ +D+l+a
  EGE27069.1 287 LMTKTPKSVDQQMRASDALSLMNENAISQLLVL-KDRQLIGVISIHDILKA 336
                 7*********************6666****999.7888***********97 PP

>> DUF3659  Protein of unknown function (DUF3659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   5.7e-05      0.25      14      31 ..     254     271 ..     252     278 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.7e-05
     DUF3659  14 vvdeeGnvvGrvveGdlk 31 
                 vvd++G+vvG  ++Gdl 
  EGE27069.1 254 VVDDDGKVVGIFTDGDLR 271
                 99*************986 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.11   4.8e+02      24      58 ..      51      85 ..      24     103 .. 0.72
   2 ?    9.7   0.1   0.00018       0.8     102     136 ..     108     142 ..     103     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.11
                HHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT CS
       SIS_2 24 aaeliadslenggkvlvfGsGhSaalaeelaarag 58
                 ++++   l+  g+v+v G G S  +  ++aa + 
  EGE27069.1 51 FVNACQTILNCSGRVVVTGMGKSGHIGRKIAATFA 85
                34445555556899999****99988888777665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00018
                 -TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEE CS
       SIS_2 102 kpgDvLlviSnsGnnavvveaaeaakergmkviAl 136
                  +gDvL+ iSnsG++  +  ++  +k++ +++i +
  EGE27069.1 108 VQGDVLIAISNSGESDEIRMLLPVVKQLNIPLISI 142
                 589***********998877777788877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2728.69
//
Query:       EGE27070.1  [L=173]
Description: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-13   48.6   0.0    1.1e-08   35.1   0.0    2.2  2  Hydrolase_3  haloacid dehalogenase-like hydrolase
    4.8e-10   40.1   0.3    1.4e-08   35.3   0.1    2.1  2  Hydrolase    haloacid dehalogenase-like hydrolase
    2.2e-06   27.9   0.1    7.3e-06   26.2   0.0    1.8  1  HAD_2        Haloacid dehalogenase-like hydrolase
    0.00032   21.2   0.2      0.005   17.3   0.1    2.5  2  HAD          haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.034   13.7   0.0        2.9    7.4   0.0    2.1  2  S6PP         Sucrose-6F-phosphate phosphohydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   1.8e-05     0.066      24      59 ..      47      81 ..      14      84 .. 0.85
   2 !   35.1   0.0   3.2e-12   1.1e-08     181     248 ..      80     147 ..      78     154 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
                 HHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEE CS
  Hydrolase_3 24 ikklkekgikvviATGRslravlpvleelgldlpvi 59
                 ++ lk+ gi ++i TGRs  +v + ++elg++ ++i
   EGE27070.1 47 LQALKQSGIILAIITGRSSAMVDRRAKELGIS-HII 81
                 899***************************98.554 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 3.2e-12
                  EEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGG CS
  Hydrolase_3 181 impkgvsKgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnne 248
                  i++ + +K tal  lak+l+i+l++++ +GD+  D++    +g+g+ + n+ e+  +++dy+t+++  
   EGE27070.1  80 IIQGQDDKLTALVGLAKKLGIELSHCAYIGDDLPDLKAVREVGFGISVPNGCEQTRAVSDYITTKTGG 147
                  7788899********************************************************99866 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.027        98       1      16 [.      11      26 ..      11      42 .. 0.85
   2 !   35.3   0.1     4e-12   1.4e-08     127     210 .]      47     122 ..      44     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.027
                SSEEEEESBTTTBCHH CS
                xxxxxxxxxxxxxxxx RF
   Hydrolase  1 iktvvfDkdGTLttge 16
                ik++++D+dG L +g+
  EGE27070.1 11 IKLFAMDVDGILSDGQ 26
                89**********9987 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 4e-12
                 HHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 127 vasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +++Lk+ gi ++++tg ++++++r a++lG       i+++i +    +  ++v ++++L+++ +++a +GD + D++a +++g
  EGE27070.1  47 LQALKQSGIILAIITGRSSAMVDRRAKELG-------ISHIIQG-QDDKLTALVGLAKKLGIELSHCAYIGDDLPDLKAVREVG 122
                 789***************************.......6666666.33456899**************************99886 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0     2e-09   7.3e-06      88     173 ..      47     123 ..      26     127 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2e-09
       HAD_2  88 LeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagi 173
                 L+ Lk+ g+ l+i+T +s+++v++  ++lgi ++   i +++d +      + +  + +kl+++ +++ y+GD   D++a +++g 
  EGE27070.1  47 LQALKQSGIILAIITGRSSAMVDRRAKELGISHI---IQGQDD-K-----LTALVGLAKKLGIELSHCAYIGDDLPDLKAVREVGF 123
                 99****************************8543...445555.3.....34699999**********************999885 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.4e-06     0.005      94     186 ..      47     117 ..      33     119 .. 0.83
   2 ?    0.3   0.0      0.23   8.2e+02     108     130 ..     148     171 ..     148     173 .] 0.86

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
         HAD  94 laahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpl 186
                 l+a ++ G+ +++++g  + +v + ++elg    +++       + g+          ++k++al     a++ gi+l+++ ++GD   Dl++
  EGE27070.1  47 LQALKQSGIILAIITGRSSAMVDRRAKELG----ISH------IIQGQ----------DDKLTALVG--LAKKLGIELSHCAYIGDDLPDLKA 117
                 45566*************************....999......88888..........445555555..566899999999999999999887 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.23
         HAD 108 Sgglrplvepll.aelgadevlat 130
                 Sg+ r++ e +l a+ ++d+++at
  EGE27070.1 148 SGAVREVCELILkAQNNFDAFIAT 171
                 8999********55666******9 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.005        18      29      58 ..      48      77 ..      12      80 .. 0.75
   2 ?    7.4   0.0    0.0008       2.9     163     212 ..      84     133 ..      79     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.005
                H.GGGGGEEEEEE-SS-HHHHHHHHHHHT- CS
        S6PP 29 eaeerkdvllvfaTGRsldsakellkeknl 58
                +a +++ + l ++TGRs +++ +  ke  +
  EGE27070.1 48 QALKQSGIILAIITGRSSAMVDRRAKELGI 77
                3556788999***********999998765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0008
                 T-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HH CS
        S6PP 163 raskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqee 212
                 + +k  Al  Lakkl++el++    Gd   D + +++   g+ V n  e+
  EGE27070.1  84 QDDKLTALVGLAKKLGIELSHCAYIGDDLPDLKAVREVGFGISVPNGCEQ 133
                 568999********************************9***99995444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1376.42
//
Query:       EGE27071.1  [L=191]
Description: hypothetical protein EA1_04475 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-20   72.6   0.1      4e-20   72.1   0.1    1.0  1  LptC      Lipopolysaccharide-assembly, LptC-related


Domain annotation for each model (and alignments):
>> LptC  Lipopolysaccharide-assembly, LptC-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.1   2.2e-24     4e-20       2     167 ..      11     173 ..      10     176 .. 0.94

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 2.2e-24
                 XXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXX.XXX-EEEEEEEEEEETTTTEEEEESEEEEEE-TTSEEEEEE-SEEEE-T.T CS
        LptC   2 lialvlaawfyslnqedspksekqlkkkksepdyvaenfettqyded.GklqyrltadklehypdddqteftnPvliiydegtqswkvtAkkAkltkkg 99 
                 +ial++a+wf+++ + + ++      ++  ++d  + +++++q+d+  G ++y+ltad+l +++ ++q e+   ++ +++++++++++tA++A+l++++
  EGE27071.1  11 VIALAVAVWFFYQEDIEVKP----ALPEVPTVDSEVTQIKAIQTDPKtGATEYTLTADSLIQNA-NGQDEMLGATIHWQPPQGETYTLTADRATLEQNS 104
                 79999999999888888888....999999***************977**************99.6669****************************** PP

                 SEEEEEEEEEEEE-SSS-S.EEEEEEEEEEEETTT-EEEEEEEEEEEESS-EEEEEEEEEETTTTEEEE CS
        LptC 100 qeleLegnVviqsltkksr.lqtitTeeltvnlktkdittdqpVkitgpnfsttGvgmkanlktkkieL 167
                  +l L+   ++ +++ +++ ++ i+  +++ n+k+++i++ +p +++++  +++++g++anl+t+++e+
  EGE27071.1 105 GDLRLSQGFRLVRAATADKpEMIIEGLNIIGNTKNRTISSRDPLTVQQGIDRFKAQGFRANLQTGEYEF 173
                 **********9999888888**********************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1417.19
//
Query:       EGE27072.1  [L=175]
Description: lipopolysaccharide transport periplasmic protein LptA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-25   89.1   2.8    2.7e-25   88.8   2.8    1.1  1  OstA            OstA-like protein
     0.0079   16.3   1.0     0.0079   16.3   1.0    2.7  2  PATR            Passenger-associated-transport-repeat
      0.008   15.8   3.0      0.053   13.1   0.5    2.0  2  LptC            Lipopolysaccharide-assembly, LptC-related
  ------ inclusion threshold ------
      0.063   13.2   0.0       0.16   11.9   0.0    1.8  1  META            META domain
        1.3    9.4   4.5        8.5    6.8   0.1    2.9  2  Cytomega_UL20A  Cytomegalovirus UL20A protein


Domain annotation for each model (and alignments):
>> OstA  OstA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   2.8   7.6e-29   2.7e-25       4     109 ..      38     144 ..      35     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 7.6e-29
        OstA   4 AdkaelddkkkvavftGnVvvtqGnltlkAdkvtvtqdkkskkierleakg.tatfrqkvdlvgeqirGkAerieydskkeiivLtgnatltqnsnsve 101
                 Ad+a+++++++v++++G+V++ qG+l++ Ad++tv+ d ++++i+ ++a+g +at++q v+ +++  +G+A+ri+y++   i++Ltgna+ltq ++s++
  EGE27072.1  38 ADRATYSERTGVTTYSGKVTIEQGTLKIAADNLTVNLDTNNRSIKSAVATGqPATIQQVVTQEKGLAKGQANRIDYNAVSGIVTLTGNAKLTQAGSSFS 136
                 9************************************************************************************************** PP

        OstA 102 Gseitydi 109
                 G++i+y  
  EGE27072.1 137 GNTIRYSL 144
                 *****976 PP

>> PATR  Passenger-associated-transport-repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.0   2.2e-06    0.0079      12      29 ..      47      64 ..      47      65 .. 0.90
   2 ?    1.3   3.0      0.11   3.9e+02       7      21 ..     118     139 ..     117     140 .. 0.52

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.2e-06
        PATR 12 tGaNtYtGgTtvsaGTLa 29
                tG +tY+G  t+++GTL 
  EGE27072.1 47 TGVTTYSGKVTIEQGTLK 64
                6789*************7 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
        PATR   7 GTLtLtGaNt.......YtGgT 21 
                 G  tLtG+         ++G T
  EGE27072.1 118 GIVTLTGNAKltqagssFSGNT 139
                 6677775322333333388877 PP

>> LptC  Lipopolysaccharide-assembly, LptC-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.5   1.5e-05     0.053     115     173 ..      29      87 ..      21      90 .. 0.67
   2 ?    3.1   0.1     0.017        60      88     150 ..     106     134 ..      88     153 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
                 SS-SEEEEEEEEEEEETTT-EEEEEEEEEEEESS-EEEEEEEEEETTTTEEEEEEEEEE CS
        LptC 115 kksrlqtitTeeltvnlktkdittdqpVkitgpnfsttGvgmkanlktkkieLlskVrg 173
                 ++++++++ ++++t++ +t + t   +V+i+++  ++ +  +++nl+t++  ++s V +
  EGE27072.1  29 DTNQPIRLLADRATYSERTGVTTYSGKVTIEQGTLKIAADNLTVNLDTNNRSIKSAVAT 87 
                 33446777777777777777777777777777777777777777777777777776665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.017
                 EE-SEEEE-T.TSEEEEEEEEEEEE-SSS-SEEEEEEEEEEEETTT-EEEEEEEEEEEESS-E CS
        LptC  88 vtAkkAkltkkgqeleLegnVviqsltkksrlqtitTeeltvnlktkdittdqpVkitgpnfs 150
                  +A++  +++ + +++L+gn +++++                                  ++s
  EGE27072.1 106 GQANRIDYNAVSGIVTLTGNAKLTQA----------------------------------GSS 134
                 44444444555555555555555555..................................333 PP

>> META  META domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.4e-05      0.16      18      59 ..      25      67 ..      18     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.4e-05
                CS-BTT---EEEECCC.EEEEE-SSSEEEEEEEECTTEEEESS CS
        META 18 avaasapatltfaedg.rvsgsagCNrfsGsytleggrltlga 59
                a+++++++++++ +d  ++s ++g  ++sG++t+e+g+l++ a
  EGE27072.1 25 ALPSDTNQPIRLLADRaTYSERTGVTTYSGKVTIEQGTLKIAA 67
                5667777789995555499*******************99865 PP

>> Cytomega_UL20A  Cytomegalovirus UL20A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0024       8.5       8      59 ..      13      64 ..       7      69 .. 0.80
   2 ?    2.2   2.0     0.061   2.2e+02      10      39 ..      65      94 ..      62     158 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0024
  Cytomega_UL20A  8 lsllavtltvalaapsqkskrsvtveqpststnsdgnttpsknvtlsqggst 59
                    ls +     +a a ps+  +    + + +t ++  g tt s +vt+ qg   
      EGE27072.1 13 LSCIVSIPMIASALPSDTNQPIRLLADRATYSERTGVTTYSGKVTIEQGTLK 64
                    55555556788999999999988999999999****************9765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.061
  Cytomega_UL20A 10 llavtltvalaapsqkskrsvtveqpstst 39
                    + a  ltv l +  +  k +v+  qp+t  
      EGE27072.1 65 IAADNLTVNLDTNNRSIKSAVATGQPATIQ 94
                    556678888888888888888888888753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1414.39
//
Query:       EGE27073.1  [L=242]
Description: ABC transporter ATPase subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-34  117.9   0.0    7.5e-34  117.2   0.0    1.4  1  ABC_tran  ABC transporter
    1.5e-05   25.0   1.0      0.012   15.5   0.0    2.2  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
     0.0018   17.8   0.1       0.83    9.0   0.0    2.1  2  SMC_N     RecF/RecN/SMC N terminal domain
     0.0023   18.4   0.1      0.022   15.3   0.0    2.0  2  AAA_23    AAA domain
  ------ inclusion threshold ------
      0.019   14.4   0.0      0.092   12.2   0.0    1.8  2  KdpD      Osmosensitive K+ channel His kinase sensor domain
       0.02   15.1   0.0      0.052   13.8   0.0    1.7  1  SbcCD_C   Putative exonuclease SbcCD, C subunit
      0.074   12.8   0.1      0.086   12.5   0.1    1.3  1  AAA_30    AAA domain
       0.19   11.5   0.0       0.34   10.7   0.0    1.4  1  AAA_29    P-loop containing region of AAA domain
       0.21   11.1   0.5        1.3    8.6   0.1    2.3  2  AAA_25    AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.0   3.8e-37   7.5e-34       2     137 .]      21     167 ..      20     167 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 3.8e-37
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren..............esdeei 85 
                 ++vs+++++g++v+i+G+nGaGK+t + +++gl+  ++G++ l ++d+++   +e++ k ig+lpqe+++f++ltv++n              e+++++
  EGE27073.1  21 EDVSFEIEQGQVVGILGPNGAGKTTSFYMVIGLVPMDKGQVILGDQDISKnAMHERAAKGIGYLPQEASIFRKLTVEQNimailqtrkdltqtEQRQQL 119
                 79*********************************************99978999***********************************999999999 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ek+++ + l++++++       s+SgG+++r ++ar+l+++pk++llDEp+a
  EGE27073.1 120 EKLMADFHLEHVRHSLG----MSVSGGERRRCEIARCLASNPKFILLDEPFA 167
                 *******9999887776....9****************************85 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.6   0.00091       1.8       2      14 ..      33      45 ..      32     100 .. 0.89
   2 !   15.5   0.0   5.9e-06     0.012     238     297 ..     140     196 ..     106     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00091
      AAA_21  2 nvliGpNgsGKSn 14
                 ++ GpNg+GK++
  EGE27073.1 33 VGILGPNGAGKTT 45
                689*********8 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 5.9e-06
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 S G +r  + ++ +l+ ++  +++l+DEp +g +P  ++ ++++++ l+++g+ v++t H
  EGE27073.1 140 SGGERRR-CEIARCLASNP--KFILLDEPFAGVDPISVSDIMQVIETLRERGIGVLITDH 196
                 6666666.66777787777..7***********************************966 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0017       3.5      25      39 ..      31      45 ..      17      55 .. 0.79
   2 !    9.0   0.0   0.00042      0.83      98     198 ..      89     197 ..      59     217 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0017
                SEEEEEESTTSSHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsn 39
                ++  i+GpNG+GK+ 
  EGE27073.1 31 QVVGILGPNGAGKTT 45
                5678*********86 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00042
                 EEEEEEETTSE.EEEEETTEEE-HHHHHHHHHCTT-STT..........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  98 sisrrvkrkge.seykingkevtkkevsellesagiske..........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                 si r++  +++   +   +k+ t++e +++le+ + + +          + SgGe+  + +a  +A +      + llDe  a  D   v+ + +++++
  EGE27073.1  89 SIFRKLTVEQNiMAILQTRKDLTQTEQRQQLEKLMADFHlehvrhslgmSVSGGERRRCEIARCLASNP----KFILLDEPFAGVDPISVSDIMQVIET 183
                 555555555442222233444444444444444433333556688888899***********9998653....599**********************9 PP

                 HCTT.SEEEEE-SS CS
                 xxxx.xxxxxxxxx RF
       SMC_N 186 kskn.aQfivislr 198
                  +++   ++++ ++
  EGE27073.1 184 LRERgIGVLITDHN 197
                 98875677777665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.022      12      34 ..      22      45 ..      12      50 .. 0.78
   2 ?    0.8   0.1       0.3     6e+02     161     186 ..     100     120 ..      61     135 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
      AAA_23 12 dqeidFsk.gltlItGpNGaGKTT 34
                d++++ ++  ++ I GpNGaGKTT
  EGE27073.1 22 DVSFEIEQgQVVGILGPNGAGKTT 45
                4455554427999**********9 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.3
      AAA_23 161 eleeledekkllekleqekekekele 186
                  +  l+++k+l ++ eq+++    le
  EGE27073.1 100 IMAILQTRKDLTQT-EQRQQ----LE 120
                 22222222222222.22222....22 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.57   1.1e+03     161     196 ..      67     101 ..      56     109 .. 0.68
   2 ?   12.2   0.0   4.6e-05     0.092      41     126 ..     112     200 ..     109     217 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.57
        KdpD 161 DltpeeLlerLkegkvykkekaeralknffrkgnLt 196
                 D++ +++ er ++g  y +++a+ +++++  ++n++
  EGE27073.1  67 DISKNAMHERAAKGIGYLPQEAS-IFRKLTVEQNIM 101
                 77778888888888777777763.444444444444 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.6e-05
        KdpD  41 ethgrketealleglevi...prkeveykgkeleeldldailarkpevvlvDelahtnapgsrhekryqdveelLeagidVitt.vnvqh 126
                 +t++r++ e+l++++++     +  ++++g e ++ ++   la +p+ +l+De     ++  + +   q +e+l e+gi V+ t  nv++
  EGE27073.1 112 QTEQRQQLEKLMADFHLEhvrHSLGMSVSGGERRRCEIARCLASNPKFILLDEPFA-GVDPISVSDIMQVIETLRERGIGVLITdHNVRE 200
                 6788999999998655431123456899999**********************644.45667788899***********99644266665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.6e-05     0.052      62      89 ..     155     182 ..     134     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                 +++++++LDE F+++D+ s++ +++++e
  EGE27073.1 155 SNPKFILLDEPFAGVDPISVSDIMQVIE 182
                 5699*******************99886 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.3e-05     0.086      17      63 ..      29      82 ..      14     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaa.g......grviglAptgkaAkvLa 63
                + +v+ + Gp G+GKtt+   +  ++  + g      +++   A  ++aAk ++
  EGE27073.1 29 QGQVVGILGPNGAGKTTSFYMVIGLVPMDkGqvilgdQDISKNAMHERAAKGIG 82
                456999***************999999993455555555556677777776665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.34      15      37 ..      23      45 ..      18      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
      AAA_29 15 htieidlkgatlltGpsGsGKST 37
                 ++ei++ +++ + Gp+G+GK+T
  EGE27073.1 23 VSFEIEQGQVVGILGPNGAGKTT 45
                567787555999**********9 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00063       1.3      22     139 ..      16     125 ..       9     132 .. 0.68
   2 ?   -1.6   0.0      0.83   1.7e+03     128     149 ..     175     195 ..     161     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00063
      AAA_25  22 rrwlvkgl...lpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagv.eslpL 116
                 +rw+v+++   +  g ++ + G+ g+GKtt  + +      G      v++ +g V++ + + s + +++R+++    l++ a  +  +  +v ++++ 
  EGE27073.1  16 QRWVVEDVsfeIEQGQVVGILGPNGAGKTTSFYMV-----IGL-----VPMDKGQVILGDQDISKNAMHERAAKGIGYLPQEASIFR-K-LTVeQNIMA 102
                 57888885333688999999*********976533.....333.....233678888888888888888888877777744443333.3.356556666 PP

      AAA_25 117 fakdrggtlltadvdaleaaiee 139
                 + ++r++ + t++ ++le+ + +
  EGE27073.1 103 ILQTRKDLTQTEQRQQLEKLMAD 125
                 66666666678888888887776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.83
      AAA_25 128 advdaleaaieevegvrlvviD 149
                 +d+ +++++++e  g+++++ D
  EGE27073.1 175 SDIMQVIETLRE-RGIGVLITD 195
                 678888999999.678888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 1905.62
//
Query:       EGE27074.1  [L=1194]
Description: bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.7e-105  353.2   0.8   2.7e-105  352.6   0.8    1.2  1  Aldedh          Aldehyde dehydrogenase family
    3.8e-99  332.0   0.0    6.7e-99  331.1   0.0    1.4  1  Pro_dh          Proline dehydrogenase
    2.9e-45  153.4   0.0    7.5e-45  152.0   0.0    1.8  1  Pro_dh-DNA_bdg  DNA-binding domain of Proline dehydrogenase
    1.1e-14   54.4   0.1    1.1e-14   54.4   0.1    3.4  4  PRODH           Proline utilization A proline dehydrogenase N


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.6   0.8    6e-109  2.7e-105      10     459 ..     565    1002 ..     557    1005 .. 0.94

  Alignments for each domain:
  == domain 1  score: 352.6 bits;  conditional E-value: 6e-109
                  EEEETT.TCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH..HTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   10 evinPa.tgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlle..erkeelaeletletGkplaearaeveeaidvlryyael 103 
                    +nP+ +++v+++v+  +++ v +++ +A +a+ +w++++a+eRa+iLr++adl+e  ++   l+ + ++e+Gk+l +a aev+ea+d++ryya++
  EGE27074.1  565 TALNPSdHRDVVGQVSFIDPNSVPDVITTALNAQTNWQTVSAAERAAILRRFADLMEdsAHMALLMMVAVREAGKTLLNAIAEVREAVDFCRYYADE 661 
                  6789998899***********************************************66678899******************************** PP

                  HHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHH CS
      Aldedh  104 aeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgeal 200 
                  ae l+ ++              P+G+v+aI+PWNfPl++++++++ al++GNtvv KPae+t+l+a l +  ++e g+Pk++l++v g g +vg+al
  EGE27074.1  662 AESLNLSS--------------PVGTVVAISPWNFPLAIFVGEVVSALVTGNTVVAKPAEQTSLIAHLAVSWLHESGVPKDALQLVLGAG-DVGAAL 743 
                  ***99755..............******************************************************************66.7***** PP

                  HH-TTESEEEEES-HHHHHHHHHH.HH.CTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT CS
      Aldedh  201 vehpevdkvsftGstevgrkiaka.aa.knlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakk 295 
                  +++++++ v ftGstev+++i k  aa ++   +++E+GG n++iv + a  +++ ++++++af +aGQ+C+a + l vqe+i+d++v+ ++ a+ +
  EGE27074.1  744 TSDERINGVIFTGSTEVAKHINKLlAArDDNPVLIAETGGMNAMIVDSTALPEQVCADVLASAFDSAGQRCSALRILCVQEDIADHVVAMIKGAMDE 840 
                  ************************766455677899************************************************************* PP

                  --BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEES..SHHHHHHHH CS
      Aldedh  296 lkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfk..deeeaieia 390 
                  l v +p + +tdvGP+i+e++++++ ++++  k+  +   ++   + a+++   fv+P +++   +d + +++E+FGPVl v++f   +++++i+  
  EGE27074.1  841 LIVDNPAALSTDVGPVIDEEAQKNLLEHINALKQ--IAPYHEV--AIASDAPSTFVAPILFE--LKDLSQLKKEVFGPVLHVVRFAahELNDLIDSI 931 
                  *****************************99988..4555544..5678999**********..5888999**************866899****** PP

                  HSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTT.SEB--CGGGEES.-BSHHHHHHHTEEE CS
      Aldedh  391 NdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaea.lpfgGvkqSglG.reggkegleeytev 459 
                  N+  y+L+ g++++   ++ ++++r++aGnvyiN+ ++ga+   +pfgG+++Sg+G + gg+ +l++ +++
  EGE27074.1  932 NKKGYALTHGIHSRIDGTIDQITDRIQAGNVYINRNIVGAVVGvQPFGGHGMSGTGpKAGGPFYLQRLSQL 1002
                  ********************************************************888889999998876 PP

>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.1   0.0  1.5e-102   6.7e-99       5     296 .]     189     479 ..     185     479 .. 0.98

  Alignments for each domain:
  == domain 1  score: 331.1 bits;  conditional E-value: 1.5e-102
                 HHHHHHT.TEEEEEEES-SS--SHHHHHHHHHHHHHHHHHHHHHHCCS-TTCC-SEEE-GGG..TT-SGGGHHHHHHHHHHHHHHHHHHHHHTT-EEEE CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh   5 ieklkkr.gvrlsldllgeavlteedadryleayleaiksiekaskalkvleapgvsvklsa..prletaeeeevmeelverlrtlakeakelgvrlli 100
                  ++++ + g+r+s+d+lgea++t+edadry+++y +ai++i+k s  + v++ +g+svklsa  pr+ +a++ +vm+el++rl++l+ +ake++++l+i
  EGE27074.1 189 GKERE-KlGYRFSFDMLGEAAMTAEDADRYYQDYVTAIHAIGKDSVGRGVYDGNGISVKLSAihPRYFRAQHARVMNELLPRLKALFVLAKEYNIGLNI 286
                 56667.55*************************************99999************************************************* PP

                 ----GGGHHHHHHHHHHHHHSCCTTT---EEEEEETTBTTHHHHHHHHHHHHHHTTS-EEEEEE--S-HHHHHHHHHHTT-S.-SB-SSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
      Pro_dh 101 DaEeaklqeltlelfrklnkepelkdwevvgntyQaYlkdalevlqkllelAeregfrlgvkLVrGAYldsErkraqelgye.spifdtkeeTDanYda 198
                 DaEea+++el+l+l++kl+++p+l++ +++g+++QaY+k++++v+++l++lA+r+  +l+++LV+GAY+dsE+k aq +g++ +p++++k +TD++Y a
  EGE27074.1 287 DAEEANRLELSLDLMEKLVSDPDLAEFNGIGFVVQAYQKRCPYVIDYLIDLARRNHQKLMIRLVKGAYWDSEIKWAQVDGLDgYPVYTRKVHTDVSYLA 385
                 *************************************************************************************************** PP

                 HHHHHHHTTTTEEEEEE-S-HHHHHHHHHHHHHT..T--GGGEEEEEETTSSHHHHHHH...HHTTS-EEEEEEECEHHHHHHHHHHHHHHHH-TT-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 199 vaelllenrdeiypavAsHNaesvakalalaeelgqekeksevefqqLlGMadnlsfal...akagynvrkYlPvGpveevlpYLvRRleENtanssft 294
                 +a++ll+++d iyp++A+HNa+s+a+++++ +++       e+efq+L+GM+++l++++   ++ g++vr+Y+PvG+++++l+YLvRRl+EN+anssf+
  EGE27074.1 386 CAKKLLAAQDVIYPQFATHNAQSLATIYEMGKDK-------EFEFQCLHGMGETLYDQVvgdNNLGRRVRIYAPVGTHKTLLAYLVRRLLENGANSSFV 477
                 ********************************99.......*******************999999********************************9 PP

                 HH CS
                 xx RF
      Pro_dh 295 rr 296
                 +r
  EGE27074.1 478 NR 479
                 86 PP

>> Pro_dh-DNA_bdg  DNA-binding domain of Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.0   1.7e-48   7.5e-45       2     112 .]      65     176 ..      64     176 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.0 bits;  conditional E-value: 1.7e-48
                     HHHHHHHTT--HHHHHHHHHHHHHHHTSSSHHHHHHHHHHTTTTS-HHHHHHHHHHCTT-GGG----------..-SS----HHHHHHHHHH-HH CS
  Pro_dh-DNA_bdg   2 leallqeyslsseEGvaLmcLAEaLLRvPdaatadaLirdklakgdwkehlgksesllvnaatwgLlltgkll.eekeeeleealkklvkrlgep 95 
                     ++al++e+slsseEGvaLmcLAEaLLR+Pd++t+d+Li+dkl++g+wk+h+g+s s++vnaa+wgL+ltgkl+  ++e+ l++al++++++ g+p
      EGE27074.1  65 VDALMHEFSLSSEEGVALMCLAEALLRIPDTTTRDRLIQDKLSDGNWKSHIGHSPSMFVNAAAWGLVLTGKLTqPTSEKGLSSALTRVLQKGGAP 159
                     89***********************************************************************7788999*************** PP

                     HHHHHHHHHHHHHHHH- CS
  Pro_dh-DNA_bdg  96 virkaveqamkllgeqF 112
                     +ir++v++amk+lg+qF
      EGE27074.1 160 FIRAGVNHAMKILGKQF 176
                     ****************9 PP

>> PRODH  Proline utilization A proline dehydrogenase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.1   2.4e-18   1.1e-14       1      48 []       9      56 ..       9      56 .. 0.99
   2 ?   -3.6   0.0       3.2   1.4e+04      22      35 ..     203     216 ..     202     217 .. 0.81
   3 ?   -3.1   0.1       2.1   9.4e+03      11      19 ..     657     665 ..     656     666 .. 0.85
   4 ?   -0.8   0.1      0.43   1.9e+03      26      45 ..    1014    1033 ..    1013    1034 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 2.4e-18
       PRODH  1 SpLRqaItaayRrpEaecVapLleaArlpeaeraairalArkLvealR 48
                S+LR+aIt+ayR +E ++V  Lle+  ++ +e++ i++lAr+L++++R
  EGE27074.1  9 STLRDAITSAYRLDEVTAVSNLLETLNFNNDEKSHISDLARRLITQVR 56
                89*********************************************9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.2
       PRODH  22 LleaArlpeaeraa 35 
                 +l +A+++++++++
  EGE27074.1 203 MLGEAAMTAEDADR 216
                 78999999998875 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.1
       PRODH  11 yRrpEaecV 19 
                 y+++Eae +
  EGE27074.1 657 YYADEAESL 665
                 9*****976 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.43
       PRODH   26 ArlpeaeraairalArkLve 45  
                  A+++  + ++++ lA+kL +
  EGE27074.1 1014 ASIDHTALSKVQRLAHKLLT 1033
                  6778888899*******965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 8187.75
//
Query:       EGE27075.1  [L=252]
Description: hypothetical protein EA1_04495 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-30  105.0  23.3    5.8e-30  104.6  23.3    1.1  1  DUF1275   Protein of unknown function (DUF1275)
  ------ inclusion threshold ------
       0.18   11.5   0.8       0.51   10.0   0.0    2.1  2  COX7B     Cytochrome C oxidase chain VIIB


Domain annotation for each model (and alignments):
>> DUF1275  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6  23.3   6.5e-34   5.8e-30       2     191 ..      16     213 ..      15     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 6.5e-34
     DUF1275   2 llllafvaGllDavaflaaggvfvsaqTGNtvllglalaegnakaalaalvsllaFvlGaalagllarrg....grrrrlvllleallllaaallvpag 96 
                 +++laf+aG+l+++a+++  ++ +s++TGN+ l+++++ ++++ +++  l+s+++F++G++l+g +        +r + +++lle+l+l +  ++   +
  EGE27075.1  16 AVVLAFCAGILNTTALMGITHISASHVTGNISLFVVSMLSNDWLNFKLLLISIGSFWVGSVLSGAIIGSSelniRRNYGYAMLLEVLMLCLSLWMYL-L 113
                 689***********************************99************************88755468888899*******888877777744.3 PP

     DUF1275  97 svsp.lalallafamGlqnalfsrlsgaeitttvlTgnltdlgidlarll.kkr.k.....larnrrlaiilafllGavvGallvks..aaalwlaaal 185
                 ++ + l  +l+a+a+Glqn+++++++g+ i+tt+lTg++ dlg+ ++++l  +r +     l    +  ++ +f++G++ + ll+++  + +++l+ ++
  EGE27075.1 114 TH-HfLGQMLIAMACGLQNSMVATYHGTVIRTTHLTGITSDLGATVGNWLvGRRvSlhkiiL----HSSLWWGFFIGSISAVLLYNYigYLSMILPIMI 207
                 43.34*********************************************754432434432....567*******************97777777777 PP

     DUF1275 186 lllval 191
                  l++al
  EGE27075.1 208 ILIAAL 213
                 777665 PP

>> COX7B  Cytochrome C oxidase chain VIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   5.7e-05      0.51      32      59 ..      88     115 ..      80     120 .. 0.88
   2 ?   -1.7   0.2      0.27   2.4e+03      12      35 ..     229     248 ..     218     251 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 5.7e-05
       COX7B  32 dfHdkyGnavlisGavfcvavwvyvltq 59 
                 ++   yG a+l+   ++c++ w+y+lt+
  EGE27075.1  88 NIRRNYGYAMLLEVLMLCLSLWMYLLTH 115
                 66778*********************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.27
       COX7B  12 lkarsiqqiaaRqshkkaspdfHd 35 
                 ++ + iq+ +    +k++s+  H+
  EGE27075.1 229 VRLKLIQNQR----KKRRSKSHHS 248
                 4444444422....2333333343 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1818.01
//
Query:       EGE27076.1  [L=484]
Description: M16-like peptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-18   66.8   0.0    6.7e-18   65.3   0.0    1.8  1  Peptidase_M16_C  Peptidase M16 inactive domain
    1.5e-16   60.8   1.1    6.3e-16   58.7   0.5    2.2  2  Peptidase_M16    Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   7.5e-22   6.7e-18       1     178 [.     229     406 ..     229     409 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 7.5e-22
                      CH-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECT.... CS
  Peptidase_M16_C   1 sltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpsk.... 90 
                      +++r++l +f ++f +++n++l+i Gd + e++++l++ +  +l+       k  + +l+  ++ k + +    + +q+++ ++ ++       
       EGE27076.1 229 KIDRDELLNFWHTFINANNATLVITGDMTAEQAKSLANHLTAKLPTG-----KSYKNTLDLTKPVKARHIHIPHNSSQTQIIIGHPTSKVrtdk 317
                      699******************************************55.....444455554455555555555555***********9998888 PP

                      CTHTTHHHHHHHHHHHHSS.TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHH CS
  Peptidase_M16_C  91 endeddlalavlntlLggg.mesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeeler 178
                         ++   +++ n++L gg  + rL +++re++g +y+++ +    r  g +++ +++d +++++++  +l  +++  +eg+t+eele 
       EGE27076.1 318 AGRQEFSDFSLGNEILAGGdFNARLMKTIREQKGYTYGIYGGMERLRAGGNYVVEFSTDGDKAADAILETLHIINESLNEGVTQEELEL 406
                      88888889999999999999***********************9999****************************************96 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.5   7.1e-20   6.3e-16      11     147 ..      83     222 ..      74     224 .. 0.94
   2 ?   -0.5   0.0      0.12   1.1e+03      58      98 ..     411     456 ..     394     464 .. 0.69

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 7.1e-20
                    SEEEEEEEES-SGGGSCTT.TTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGG..HHHHHHHHHHHHHSBTTSHH CS
  Peptidase_M16  11 ktsavglvvdaGSryepkd.lnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskd..lekaldvladvfkapllees 103
                    + + ++l+++aGS+y+ +   +G+A+++  m+ +gT   +++++++  e+lG  + +t  ++n +  + +ls++  l++a d++ d +++p+++++
     EGE27076.1  83 PIVDISLYFNAGSAYDHQVgKSGTANMVATMLTQGTDSLSEDEFVAAKERLGIDFTSTANKDNLTLSLRSLSDQslLNQAADLMVDAVTQPAFDDK 178
                    56889***********875268************************************************************************** PP

                    HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS- CS
  Peptidase_M16 104 evererkvvekeveavdaepekvveenlhaaayrekalgrsllg 147
                    +++r+++++   +++ +++p +v+  + h+a y+++++++++ g
     EGE27076.1 179 TLQRNKNQLITSLKQKKQNPYHVASVAYHQAVYENHPYAHATTG 222
                    **************************************999876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.12
                    HHTTCEE....EEEEESSE.EEEEEEEEGGGHHHHHHHHHHHHHSB CS
  Peptidase_M16  58 eklGgsl....nAttsren.tvYyvevlskdlekaldvladvfkap 98 
                    +k+G +     nA++ r     + ++ ++++l+  l++l + ++++
     EGE27076.1 411 NKNGFANifssNASIHRVIgALFVADYPKDHLNHTLNRLDNATINS 456
                    5555544444466666654145778999999**9999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3548.19
//
Query:       EGE27077.1  [L=470]
Description: M16-like peptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-28   99.5   0.0    4.7e-28   98.5   0.0    1.6  1  Peptidase_M16_C  Peptidase M16 inactive domain
    1.5e-25   89.9   0.0    2.6e-25   89.2   0.0    1.3  1  Peptidase_M16    Insulinase (Peptidase family M16)
      0.009   16.2   0.2       0.57   10.4   0.1    2.5  2  DUF2577          Protein of unknown function (DUF2577)
  ------ inclusion threshold ------
      0.035   13.7   0.0        0.1   12.2   0.0    1.7  2  Toxin_R_bind_C   Clostridium neurotoxin, C-terminal receptor 


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0     1e-31   4.7e-28       2     182 ..     209     393 ..     208     394 .. 0.94

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 1e-31
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECT..... CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpsk..... 90 
                      +t+ dl+++y+++Y p+n++l++vGd+d+++++ +iekyfg+lk s+   +k t+ +++   +++ +  +  ++++ ++l ++f +p +     
       EGE27077.1 209 ITVTDLQNWYDQWYAPNNATLVLVGDIDPKTALPWIEKYFGTLKPSS--LPKRTPLSQP--SHRGYTQANSYQNVKVPSLIMGFNVPTLgsrti 298
                      89******************************************998..7788877777..777788888888888****************** PP

                      .CTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEE.EEEESSCEEEEEEEEEECT.THHHHHHHHHHHHHHHHHHTS-HHHHHHHHH CS
  Peptidase_M16_C  91 .endeddlalavlntlLgggmesrLytnlrekeglaysvsaf.ndsyrdsglfgisatadpe.nveevvevilkelrklkkeglteeelerakn 181
                       +++++  al++l+++  gg + r+ ++l  k ++  svs   n+  +   lf+i at   +  +++++++il+el++++++++t++el r+++
       EGE27077.1 299 kNHTKEAHALSLLSDIADGGLSARFERHLIRKLQILNSVSIRyNMLSKSDDLFTIIATPREGvSLADAEAAILAELNAITNDQITDDELARSRA 392
                      ******************************************999999************99*****************************997 PP

                      H CS
  Peptidase_M16_C 182 q 182
                       
       EGE27077.1 393 G 393
                      6 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   5.8e-29   2.6e-25       1     146 [.      54     200 ..      54     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 5.8e-29
                    EEEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHH CS
  Peptidase_M16   1 rvalesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfk 96 
                    +v++++d++a+ +   ++ d+GS +ep    G++H+lehm+fk  k  +++ + + ++  Gg+lnA+ts e t+Yy ++++++++ al++ a+ ++
     EGE27077.1  54 KVIIKQDSRAPIVMTQVWYDVGSSDEPIGKGGISHFLEHMMFKDAKGVSHDDYQRLISHFGGELNAFTSDEFTAYYESLPANQFPLALQIEANRMN 149
                    58899999**************************************************************************************** PP

                    SBTTSHHHHHHHHHHHHHHHH.HHCCHHHHHHHHHHHHHHTTTSGGGSHSS CS
  Peptidase_M16  97 aplleesevererkvvekeve.avdaepekvveenlhaaayrekalgrsll 146
                    +  l+ +ev +e++v+++e+    d++p + ++e+  a a  + + g +++
     EGE27077.1 150 NLILTAEEVATEKQVIKEERRlTTDDKPTAKAHEEFLAIALPNSPKGLPII 200
                    **************9998877255666788888888888888777777765 PP

>> DUF2577  Protein of unknown function (DUF2577)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00013      0.57      45      86 ..      18      59 ..      12      67 .. 0.89
   2 ?    3.5   0.0     0.019        85      34      70 ..     149     199 ..     137     353 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF2577 45 ilesltaytetvkiesstataasfiiitsdgLkigdkValir 86
                 ++sl  ++  ++++++  t+a++ +i++++Lk g kV++ +
  EGE27077.1 18 ACQSLDHTQNAISTTKTPSTQAEHHDIYTQTLKNGLKVIIKQ 59
                6899999999999999999999999*************9866 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.019
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............x RF
     DUF2577  34 qkliLteeqLvilesltaytetvkiesstataasfi..............i 70 
                 ++liLt+e++   +++ + ++ ++++++ +++a +               i
  EGE27077.1 149 NNLILTAEEVATEKQVIKEERRLTTDDKPTAKAHEEflaialpnspkglpI 199
                 249*******************99999877777665555555555555550 PP

>> Toxin_R_bind_C  Clostridium neurotoxin, C-terminal receptor binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.3e-05       0.1      41      76 ..      25      60 ..      16      66 .. 0.87
   2 ?   -2.4   0.0       0.7   3.1e+03      83     165 ..     149     233 ..     128     236 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.3e-05
                    TTSSCEEEES-EEEECCTTCEEE.-S-S-EEEEEES CS
  Toxin_R_bind_C 41 itvyiyllkaprysvgklniysrrlyrGlkfiikky 76
                     ++ i  +k+p+    + +iy + l +Glk iik+ 
      EGE27077.1 25 TQNAISTTKTPSTQAEHHDIYTQTLKNGLKVIIKQD 60
                    5677899***************************85 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.7
                     SSB-BTTEEEEEEEEETTEEEEE.EEETTSS.ECTCCEEEEECCG.-TTSBEEEEE...ECE-TTSTCSSBBEEEEETTTS-EEEEEE CS
  Toxin_R_bind_C  83 dsivksndrvklyvvvknkeyil.aypkdqa.avekldrilevgdnvgnlslvkkm...kakklrdlktkskqlkldddknadlGlvG 165
                     ++++ + + v     v  +e +l +  k  a a e+++ ++ ++++  +l+ +  m   +a    dl++   q    ++  a l lvG
      EGE27077.1 149 NNLILTAEEVATEKQVIKEERRLtTDDKPTAkAHEEFL-AIALPNSPKGLPIIGSMpeiEAITVTDLQNWYDQWYAPNN--ATLVLVG 233
                     55555555555555555555555311222220222222.2333444444444443311156666666665555444444..5565555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3678.28
//
Query:       EGE27078.1  [L=37]
Description: hypothetical protein EA1_04510 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 291.38
//
Query:       EGE27079.1  [L=707]
Description: hypothetical protein EA1_04515 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-135  453.6   5.8   1.5e-135  453.3   5.8    1.0  1  DUF839      Bacterial protein of unknown function (DUF839)
    1.6e-05   24.5   2.0    1.6e-05   24.5   2.0    2.0  2  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> DUF839  Bacterial protein of unknown function (DUF839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.3   5.8  1.7e-139  1.5e-135       2     524 .]      72     666 ..      71     666 .. 0.88

  Alignments for each domain:
  == domain 1  score: 453.3 bits;  conditional E-value: 1.7e-139
      DUF839   2 gfgplaaklddlvavpegyeakvlvrwGdklfagapefd....qsaeaqekqvgynhDgmaffpls......rsadeglLvvNhEytseeilf...... 84 
                 +f+++ + + ++++v+egy+a+ +++ G++l +g ++f     +s e    ++g nhDgm+f  ++      +++++ lL++NhEyt+e++        
  EGE27079.1  72 QFKAVPHYTGNDMKVAEGYTARAFLHLGEPLIDGIEAFRdnreHSGESFLYRMGDNHDGMHFYGMVngkfdpNQSNRALLAINHEYTNENLHPmgfftq 170
                 78888888999***************************955544444445679*********99888999998999**************97799***9 PP

      DUF839  85 .....ekekpspvtaelvekelaalGvtvveisrkagkwqvvrdsklnrritantemrlsGPaagsellktsadaegvkilGTanNCagGtTpWGtyLt 178
                           +++ a +v+  ++a+Gvtvve++++ +++++v++s +n+r+ ++t++  +G aags++l t+ d++g ++ G  n C  G++pWGtyLt
  EGE27079.1 171 ednnaAPIYRKKRLAMDVRRDANAHGVTVVELRKTGDRYEMVKNSPFNKRFSSATTVDFAGAAAGSKMLITKFDKSGKSTWGINNQCGSGMSPWGTYLT 269
                 8855433444666677899******************************************************************************** PP

      DUF839 179 cEEnfngyfgge.ea......vkadqkryGit.gttgy..................erFdva...........nepkkfGyvvEvdpvdprstpvkrta 240
                  EEnf + f+   ++       +    ryG++ ++tg                   +r++++           n  + fGy+vE+dp dp+ ++vkrt 
  EGE27079.1 270 TEENFLNVFARGeDKakigtqADVALARYGLKeNSTGGgylwhtaddkegivtdefSRWEATakandasadyrNGFNGFGYIVEIDPFDPKARAVKRTS 368
                 *******66654255799976666789****976554356*************99944444455556667777999*********************** PP

      DUF839 241 lGrfkHEaaavvveddkr.vvvYlgdDerkeylYkFvsndrvgtgns....kansaLldeGtLyvakfnedgtveWvplvegqggltaeng.fadqaev 333
                 lGrf+HE++a+v    ++ vv+Y+gdD r+ey+YkFvs+ +  + +     ka  + +++GtLyva fn dgt+eW +l++g  + +++   f+dqa+v
  EGE27079.1 369 LGRFAHENCAFVPPVAGKpVVFYMGDDARGEYIYKFVSKAKWSPSDVgkglKAGDKYMNNGTLYVAVFNTDGTGEWRELSYG--KVNHKDYpFKDQADV 465
                 **********9976555449**********************999877788899999**********************998..66665556******* PP

      DUF839 334 lvktrlaadkvGatkmdrpEdievnPttgevyvvltnnkkrdeskidsanpr....aknkyGqivrlieesrdvaatkftwdlfllaGdpedakaasae 428
                 ++++rlaad vGatkmdrpE+i v+P tgevyv+ltnn+kr  +  d+anpr    + n++G+ivr++e+ + ++at f wd++l a ++  ++++  +
  EGE27079.1 466 VINARLAADSVGATKMDRPEWISVSPITGEVYVTLTNNSKRTVEATDAANPRsynnKGNQHGHIVRWRERGE-HTATAFDWDVYLFAAPNDLTEQNLSN 563
                 *****************************************99999****98332246789*******9966.****************999999**** PP

      DUF839 429 ssegndlespDnlafdpaGrlwiatDgsgskde........llgvtaeGkvynlarndGnn.vltsdaargevkrfltepegsEvtGvtfsPdgktlfv 518
                  s++ndl+spD+l fdp+G lwi+tD s+ +++        l  +  +Gk+++   ++G n    + a+ +++krf+ +p+g+EvtG+t++Pd ktlf+
  EGE27079.1 564 LSAENDLSSPDGLYFDPRGVLWIQTDDSAYTKTtncmllaaLPSHVGDGKIMT--TTTGRNtPVGAMATNDTLKRFFVGPKGCEVTGITMTPDFKTLFI 660
                 ****************************9988889997655555555666555..56898944455677789*************************** PP

      DUF839 519 nvqhPg 524
                 n+qhPg
  EGE27079.1 661 NIQHPG 666
                 *****9 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   2.0   1.8e-09   1.6e-05       2      23 ..      27      48 ..      26      50 .. 0.92
   2 ?   -5.1   3.0         2   1.8e+04      15      18 ..     231     234 ..     230     236 .. 0.33

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.8e-09
  TAT_signal  2 lSRRdFLKgsAAaaAAaalggc 23
                +SRR+ LKg+A+++AAa++g++
  EGE27079.1 27 VSRRTILKGGAGLTAAAMFGSL 48
                8******************986 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 2
  TAT_signal  15 aAAa 18 
                 +AAa
  EGE27079.1 231 GAAA 234
                 3332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4882.42
//
Query:       EGE27080.1  [L=313]
Description: signal recognition particle-docking protein FtsY [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-78  260.7   3.1    1.2e-77  260.0   3.1    1.3  1  SRP54            SRP54-type protein, GTPase domain
    3.5e-11   43.2   0.7    8.7e-11   41.9   0.7    1.7  1  SRP54_N          SRP54-type protein, helical bundle domain
    1.2e-06   27.9   0.2      2e-06   27.2   0.2    1.3  1  Zeta_toxin       Zeta toxin
    3.5e-05   22.9   2.3     0.0019   17.2   1.7    2.4  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
    0.00012   22.5   1.2    0.00021   21.7   0.5    1.7  2  AAA_17           AAA domain
    0.00014   22.1   0.1    0.00029   21.0   0.1    1.6  1  AAA_33           AAA domain
    0.00014   22.2   0.0    0.00033   20.9   0.0    1.7  1  AAA_22           AAA domain
    0.00014   21.7   4.4    0.00026   20.8   4.4    1.5  1  AAA_30           AAA domain
    0.00025   21.0   0.2    0.00063   19.7   0.1    1.8  2  APS_kinase       Adenylylsulphate kinase
    0.00063   19.7   2.0     0.0022   17.9   0.3    2.2  2  AAA_31           AAA domain
     0.0011   19.4   0.7     0.0018   18.7   0.2    1.7  1  AAA              ATPase family associated with various cellul
     0.0019   18.6   0.2      0.013   15.9   0.1    2.2  2  AAA_16           AAA ATPase domain
      0.002   17.9   0.4     0.0057   16.4   0.1    1.8  2  Thymidylate_kin  Thymidylate kinase
     0.0028   18.2   0.2     0.0048   17.4   0.2    1.5  1  ABC_tran         ABC transporter
     0.0033   17.5   3.5      0.017   15.2   1.8    2.5  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
     0.0063   15.8   0.3     0.0085   15.4   0.3    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0077   16.8   0.1      0.017   15.7   0.1    1.8  1  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.052   13.6   0.0    2.0  2  AAA_14           AAA domain
      0.013   15.5   1.1      0.024   14.7   0.4    1.9  2  AAA_5            AAA domain (dynein-related subfamily)
      0.014   15.1   0.4      0.066   12.9   0.3    2.4  3  AAA_24           AAA domain
       0.02   14.8   2.1      0.069   13.1   0.7    2.3  2  NTPase_1         NTPase
      0.022   14.3   0.1      0.048   13.2   0.1    1.6  1  AAA_7            P-loop containing dynein motor region
       0.03   14.3   0.4      0.086   12.8   0.3    1.9  1  ResIII           Type III restriction enzyme, res subunit
      0.033   13.7   2.2       0.39   10.1   0.3    2.4  2  KdpD             Osmosensitive K+ channel His kinase sensor d
      0.044   14.1   1.9      0.068   13.5   1.0    1.8  1  AAA_19           AAA domain
      0.059   12.1   0.4        5.7    5.6   0.0    2.5  3  AAA_32           AAA domain
      0.065   12.7   0.0       0.13   11.6   0.0    1.5  1  KTI12            Chromatin associated protein KTI12
      0.065   12.4   2.0       0.13   11.4   0.6    2.0  2  ArsA_ATPase      Anion-transporting ATPase
      0.072   12.0   0.6       0.51    9.2   0.1    2.0  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.074   13.5   0.1       0.39   11.1   0.1    2.2  2  RNA_helicase     RNA helicase
      0.079   12.3   0.0       0.14   11.4   0.0    1.4  1  VirC1            VirC1 protein
       0.11   12.4   1.0       0.22   11.4   0.3    1.8  2  MobB             Molybdopterin guanine dinucleotide synthesis
       0.12   12.3   0.0       0.26   11.2   0.0    1.5  1  Rad17            Rad17 P-loop domain
       0.14   12.2   2.0       0.64   10.1   2.0    2.1  1  MMR_HSR1         50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.0   3.1   2.2e-80   1.2e-77       2     195 ..     110     309 ..     109     310 .. 0.99

  Alignments for each domain:
  == domain 1  score: 260.0 bits;  conditional E-value: 2.2e-80
                 EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndke 100
                  vil+vG++G+GKTtt++KLa++l++egk+v+l+a DtfRaaA+eQL++++e+ g+ vi++ +++d+a+v+++a+++ak+++idv++ DTaGrlqn+++
  EGE27080.1 110 YVILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQIWGERNGIAVIAQGHGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQNKTH 208
                 79************************************************************************************************* PP

                 HHHHHHHHHHHH......SSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHH CS
       SRP54 101 lmeelkkikkvv......kpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsr 193
                 lm+el+k+ +v+      +p+e+++vlda tgq+a++q++ F+eav++tg+ +tklDg+akgG +++ia+++++Pi+figvGe i+dl++f+p+++v++
  EGE27080.1 209 LMNELEKVVRVMkkgdetAPHETMIVLDAGTGQNAINQVQVFSEAVNLTGISVTKLDGTAKGGVVFNIAQNTDIPIRFIGVGEGIDDLQPFKPKDFVDA 307
                 *************************************************************************************************** PP

                 HH CS
       SRP54 194 ll 195
                 ll
  EGE27080.1 308 LL 309
                 98 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.7   1.7e-13   8.7e-11       2      75 .]      25      90 ..      24      90 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.7e-13
                HHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTSS-HHHHHHHHHHHHH CS
     SRP54_N  2 gkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekklkpkqqvkkivkdeL 75
                +++l ++l +   +++id+e+lee    +e++Ll aD+gv+++ ++i+n+ +++++  +l  + +++k++k eL
  EGE27080.1 25 SEGLVNVLVG---GKQIDDELLEE----VEDQLLVADIGVNATNRIIKNLTEQTAR-GDLIYSHALYKALKTEL 90
                5566666655...99*********....**********************996666.88999*********998 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.2   3.8e-09     2e-06      13     119 ..     106     215 ..      98     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.8e-09
  Zeta_toxin  13 qerPklillgGqpGAGKselaellkdelerqgnvvrl.dpDdlRelhPeyeeilka..dpkkaseltqkdaselvekllqeaiengyniivegtlrspd 108
                  ++P +il++G  G GK++++ +l+++l+++g+ v l  +D++R+   e  +i  +    +  ++   +d+  +   ++q a  +g+++++  t    +
  EGE27080.1 106 TKKPYVILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLaAGDTFRAAATEQLQIWGErnGIAVIAQGHGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQ 204
                 589**************************77777766268******99999998862133445556678999999999999999999999988888888 PP

  Zeta_toxin 109 vvkklaealkk 119
                 +  +l+++l+k
  EGE27080.1 205 NKTHLMNELEK 215
                 88778777765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.7   3.7e-06    0.0019      24     150 ..     104     220 ..      96     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.7e-06
                 GG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------------------HCCCTSTTEEEEEE-----HHHHHHHHHHHHHHHHHTT- CS
        MeaB  24 akaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsilGDklRleelavdegvfiRslpsrGalGGlaaktrevvllleaaGf 122
                 +++ +  v+ + Gv G+Gk t++ +l+ +l+++Gk v + a D     +      ++l+       +g+    + ++G+    a    ++++   a G 
  EGE27080.1 104 DTTKKPYVILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAA-----TEQLQ--IWGERNGIA---VIAQGHGSDSASVIFDAMQSAKAKGI 192
                 56667788999**************************998877533222.....22332..233334443...34567666677777888888888888 PP

                 SEEEEEEESSTTHHHHHHTT-SEEEEEE CS
        MeaB 123 DvvlietvGvGqsevdvaevvdtfvvll 150
                 Dv++ +t G  q  +++++  + +v ++
  EGE27080.1 193 DVLIADTAGRLQNKTHLMNELEKVVRVM 220
                 8888888888888888888777776665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       8.2   4.3e+03      66      66 ..      51      51 ..      16      93 .. 0.58
   2 !   21.7   0.5     4e-07   0.00021       1      96 [.     115     217 ..     115     241 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 8.2
                H CS
      AAA_17 66 a 66
                 
  EGE27080.1 51 L 51
                2 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 4e-07
                 EE-TTSSHHHHHHHHHHHH....TEEEEEHHHHHHHHHHTT....TSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEES CS
      AAA_17   1 lGgPGsGKgtqceklveky....gfthlsaGdllreeakrg....glakardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldg 91 
                 +G+ G+GK+t + kl++++    +  +l aGd +r+ a+++    g  +    ++++  ++   +   a+++ + + + + ++ d+  r++++  ++ +
  EGE27080.1 115 VGVNGVGKTTTIGKLAKRLqnegKSVMLAAGDTFRAAATEQlqiwGERNGIAVIAQGHGSDSASVIFDAMQSAKAK-GIDVLIADTAGRLQNKTHLMNE 212
                 79***************9988878999*********9998864433333344455777777788888888777664.5677899999999999888888 PP

                 SHHHH CS
      AAA_17  92 lpkev 96 
                 l+k v
  EGE27080.1 213 LEKVV 217
                 88644 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   5.5e-07   0.00029       1      78 [.     111     199 ..     111     234 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.5e-07
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfg.....tdqqskt.......dytrvldrlyqilnelarkalsagrnvildat 78 
                 ++l+vG++G+GK+t + +l+k+l+     + l + dt+r + ++           +        + + +d++   +++  ++a ++g++v++  t
  EGE27080.1 111 VILMVGVNGVGKTTTIGKLAKRLQnegksVMLAAGDTFRAAATEqlqiwG-----ErngiaviAQGHGSDSAS-VIFDAMQSAKAKGIDVLIADT 199
                 89*****************9999999995555566777766665333332.....133344444444544444.556888888888888777555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   6.3e-07   0.00033       4     115 ..     108     216 ..     103     235 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.3e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka......erlsseellealeqalraravielli 96 
                 + ++++ +G  G+GKTt++ +l+++l         + e  +v l+++ + +  ++e l+++g+++         + +s  ++    q ++a++   +li
  EGE27080.1 108 KPYVILMVGVNGVGKTTTIGKLAKRL---------QNEGKSVMLAAGDTFRAAATEQLQIWGERNGIaviaqgHGSDSASVIFDAMQSAKAKGI-DVLI 196
                 6789999*******************.........77778888999998999999999999976655999887566666666555566666666.8*** PP

      AAA_22  97 iDEaqhlr.seealeeLrsl 115
                  D a +l  +  +++eL + 
  EGE27080.1 197 ADTAGRLQnKTHLMNELEKV 216
                 *******6535555555333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   4.4   4.9e-07   0.00026      17     112 ..     108     217 ..      99     266 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.9e-07
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaaggrviglAptg.kaAkv..La...eelgieastiakllkrlk...........grarlepg.tllivDEa 97 
                 +  v +++G+ G GKtt++++l++ ++++g++v+++A    +aA++  L+   e      + ia + + ++           + a+ + g ++li D a
  EGE27080.1 108 KPYVILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTfRAAATeqLQiwgE-----RNGIAVIAQGHGsdsasvifdamQSAKAK-GiDVLIADTA 200
                 3358999**************************999965413333311444442.....33344444333344445555543434444.4599999999 PP

      AAA_30  98 gmv..dtkqlaallkaa 112
                 g +   t+ +++l k +
  EGE27080.1 201 GRLqnKTHLMNELEKVV 217
                 98844344444443333 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.2e-06   0.00063       2      49 ..     109     156 ..     108     166 .. 0.92
   2 ?   -2.7   0.0         9   4.8e+03      21      38 ..     249     266 ..     237     268 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.2e-06
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT- CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdL 49 
                 + v+++ G+ g GK+t   +l+k+L+++g+sv+l  Gd+ R   +++L
  EGE27080.1 109 PYVILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQL 156
                 789**************************************9888777 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9
                 HHHHHHHHTT--EEEEEH CS
  APS_kinase  21 alekkLvekgisvylLdG 38 
                  ++++++ +gisv+ LdG
  EGE27080.1 249 VFSEAVNLTGISVTKLDG 266
                 456778888899999998 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.75     4e+02      55     103 ..      24      70 ..      13     110 .. 0.55
   2 !   17.9   0.3   4.2e-06    0.0022      12      86 ..     119     197 ..     110     226 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.75
      AAA_31  55 iektlyevlieeknikeaiiktkvenldlipssidLaeaeielvelekk 103
                 +++ l++vl+  k+i++ +   +  + +l++++i + + +  + +l+++
  EGE27080.1  24 LSEGLVNVLVGGKQIDDELL--EEVEDQLLVADIGVNATNRIIKNLTEQ 70 
                 55566666666666666666..333445666666555554444444433 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 4.2e-06
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQ.anattglgi.ekneiektlyevl.i.eeknikeaiiktkvenldlips 86 
                 GvGKTTt  +la+ l ++gk v+l   D+  a+at +l+i  +++    + +     + + i +a++++k + +d++ +
  EGE27080.1 119 GVGKTTTIGKLAKRLQNEGKSVMLAAGDTFrAAATEQLQIwGERNGIAVIAQGHgSdSASVIFDAMQSAKAKGIDVLIA 197
                 9***************************961556666776222222222222222223344444444444555555554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   3.5e-06    0.0018       1      88 [.     112     212 ..     112     249 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.5e-06
                 EEEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS..................STTHHHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHHTTC CS
         AAA   1 vllyGppGtGKTllakavakelg..vefleisgsellsk..................yvgesekkirelfkeakeka..kpsilfiDEidalaksrsgs 77 
                 +l++G  G+GKT+++  +ak l+   + + + + + +                     +g+++++ + +f+++++ +  +  +l+ D + +l ++    
  EGE27080.1 112 ILMVGVNGVGKTTTIGKLAKRLQneGKSVMLAAGDTFRAaateqlqiwgerngiaviAQGHGSDSASVIFDAMQSAKakGIDVLIADTAGRLQNKT--- 207
                 699******************963433444444444433477777788889999999666666666666655544444347999999888886666... PP

                 CCHHHHHHHHH CS
         AAA  78 eseeeervvnq 88 
                        ++n+
  EGE27080.1 208 ------HLMNE 212
                 ......22222 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.8   1.5e+03      53     137 ..       8     101 ..       3     105 .. 0.51
   2 !   15.9   0.1   2.5e-05     0.013      25      63 ..     110     148 ..     103     237 .. 0.54

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.8
      AAA_16  53 giflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleealaavpelagaea.......srllellkrll.allsrderpl 137
                 g+f r k+  ++s+  +s  l+++l   + + ++l e+ +++l  ++    ++ +++++l+ + a       ++l+ +lk  l + l+++  pl
  EGE27080.1   8 GWFSRMKAGLSKSSKNLSEgLVNVLVGGKQIDDELLEEVEDQLLVADIGVNATNRIIKNLTEQTArgdliysHALYKALKTELtDILTPKVAPL 101
                 5555555555555555555555555555555555555444333333333333333555555555556666666666666666666666555555 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.5e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                  ++l +G  GvGK++ + +l+++l+ +g  ++ +  d +
  EGE27080.1 110 YVILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTF 148
                 578999********************9755544444444 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.1e-05    0.0057       3      29 ..     116     142 ..     115     156 .. 0.92
   2 ?   -2.3   0.0       5.9   3.1e+03     143     176 ..     208     239 ..     195     246 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-05
                      ESTTSSHHHHHHHHHHHHHHTTE.EEE CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvl 29 
                      G++G+GKtt + +l++rl++eg++v+l
       EGE27080.1 116 GVNGVGKTTTIGKLAKRLQNEGKSVML 142
                      9*********************99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.9
                      TSHHHHHHHHHHHHHHHHHHHHTTSTEEEEETTS CS
  Thymidylate_kin 143 eeeeeqldflrkvrerylelakederiliidask 176
                      + + e +++ r +++  +e a   e+++++da  
       EGE27080.1 208 HLMNELEKVVRVMKK-GDETA-PHETMIVLDAGT 239
                      355555555555554.66666.388888888865 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   9.1e-06    0.0048      13      80 ..     111     191 ..     105     264 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.1e-06
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG.....B-HHHCCHCEEEE-SS--S-TTSBHHHH.......H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......x RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGeilld.gkdlke.....qeleslrkeigvlpqepqlfpeltvren.......e 80 
                 ++ +vG nG GK+t +  la+ l+++  ++ l  g+ ++       ++   r+ i+v+ q +  ++ + + +         
  EGE27080.1 111 VILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAaGDTFRAaateqLQIWGERNGIAVIAQGHGSDSASVIFDAmqsakakG 191
                 6789********************988888666444444466644666777899999999987777777777755443330 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.8   3.2e-05     0.017       9      87 ..     119     267 ..     111     289 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.2e-05
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH...HTTEB-HHHH.................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx.................................................. RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlai...leglendiep.................................................. 54 
                 GvGKTt+  +La+ l+++g+ V l   D+ + +++    + g +n i+                                                   
  EGE27080.1 119 GVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEqlqIWGERNGIAViaqghgsdsasvifdamqsakakgidvliadtagrlqnkthlmnelekvv 217
                 9***********************999998777664555556666666688999888888888888888888888888888888888888777777777 PP

                 .....................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS. CS
                 .....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .....................dlkrllellealgkkkalllkiagvvlnrvdge 87 
                                      +   + + +++++ +++ ++++ g+ +++ dg 
  EGE27080.1 218 rvmkkgdetaphetmivldagT---GQNAINQVQ-VFSEAVNLTGISVTKLDGT 267
                 7777777777777777774432...333333322.2222356666666666665 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   1.6e-05    0.0085       2     119 ..     110     219 ..     109     247 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.6e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrl 100
                  v+l  Gv G GKt    +l+ +l   ++e ++v+l     ++++  e+l+   e++ +   +++  s   ++    +a ++++ + +dv+i D A rl
  EGE27080.1 110 YVILMVGVNGVGKTTTIGKLAKRL---QNEGKSVMLAAGDTFRAAATEQLQIWGERNGIAVIAQGHGSDSASVI--FDAMQSAKAKGIDVLIADTAGRL 203
                 589999******************...8888899999999******9999877755666666655555555555..77999****************** PP

     DUF2075 101 ltksdqaekqseenqlkel 119
                  +k +  ++    + + ++
  EGE27080.1 204 QNKTHLMNE---LEKVVRV 219
                 **7776443...3444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   3.2e-05     0.017       1      33 [.     112     153 ..     112     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.2e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.........gvnlrdvak 33 
                 Il  G+ GvGKtt    L+krl++         g+  r  a+
  EGE27080.1 112 ILMVGVNGVGKTTTIGKLAKRLQNegksvmlaaGDTFRAAAT 153
                 7889*****************977677775555555554444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       4.6   2.4e+03      80     114 ..      61      95 ..      56     103 .. 0.78
   2 ?   13.6   0.0   9.8e-05     0.052       4      76 ..     111     187 ..     108     223 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.6
      AAA_14  80 ekalkslvdegknldvivtGSnskllskeiatsla 114
                  +++k+l +++ ++d+i +  + k l+ e+++ l+
  EGE27080.1  61 NRIIKNLTEQTARGDLIYSHALYKALKTELTDILT 95 
                 67889999999899999988888888888877776 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 9.8e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.....kllelileklke..ekktylflDEiqev 76 
                 +++++G+  vGKTt + +l+k+l  + +s++  + d+ r ++ ++ +     + + +i +   +  ++   +++D +q +
  EGE27080.1 111 VILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQLQiwgerNGIAVIAQ---GhgSDSASVIFDAMQSA 187
                 7899****************9999677777777777766655444433332222222222...13346666788877766 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       8.8   4.6e+03      28      48 ..      63      83 ..      57      93 .. 0.71
   2 ?   14.7   0.4   4.5e-05     0.024       2      34 ..     112     144 ..     111     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 8.8
                EEEE--TT--HHHHH--B--. CS
       AAA_5 28 eyvqltrdtteedlkgrreik 48
                 +++lt++t + dl+++  + 
  EGE27080.1 63 IIKNLTEQTARGDLIYSHALY 83
                567889999999999987764 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.5e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltr 34 
                 +l+vG  G+gK++ + +la++l++e   v+l +
  EGE27080.1 112 ILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAA 144
                 699*******************66655555543 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       8.5   4.5e+03     144     168 ..       9      33 ..       3      72 .. 0.64
   2 ?   -2.4   0.0       6.3   3.3e+03      85     115 ..      63      94 ..      49      95 .. 0.73
   3 ?   12.9   0.3   0.00013     0.066       2      78 ..     109     204 ..     108     280 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 8.5
      AAA_24 144 kytrlepklgkktanelkeevDlvl 168
                  + r++  l+k ++n+ ++ v +++
  EGE27080.1   9 WFSRMKAGLSKSSKNLSEGLVNVLV 33 
                 5566667777777766666666554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.3
      AAA_24  85 virqnekaeskedkgdgkG.ygelaeefrrll 115
                 +i++   ++ + d  +  + y++l++e++++l
  EGE27080.1  63 IIKNLTEQTARGDLIYSHAlYKALKTELTDIL 94 
                 45555555666777788899999999998887 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.00013
      AAA_24   2 klkiliyGpsgiGKTtlakel......gpkplfi...dtekGlksldadkfpdieswedfldevvel.......................aaeladykt 68 
                 ++ il++G +g+GKTt++ +l      + k +++   dt++   +    +   ++ w +                               +a+ +++++
  EGE27080.1 109 PYVILMVGVNGVGKTTTIGKLakrlqnEGKSVMLaagDTFR---AAATEQ---LQIWGE-------RngiaviaqghgsdsasvifdamqSAKAKGIDV 194
                 689***************99966666544444442222222...111111...111222.......022222234455555566666666677777788 PP

      AAA_24  69 lviDtidele 78 
                 l+ Dt++ l 
  EGE27080.1 195 LIADTAGRLQ 204
                 8888777765 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   0.00013     0.069       2      30 ..     112     140 ..     111     155 .. 0.91
   2 ?    0.1   0.0       1.3   6.6e+02      84     116 ..     179     212 ..     171     227 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00013
                 EEEE--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkv 30 
                 +++ G  GvGKtT + k+++ l+++g +v
  EGE27080.1 112 ILMVGVNGVGKTTTIGKLAKRLQNEGKSV 140
                 567899*******************9887 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHH.HHH-EEEE---STTGGG-HHHHH CS
    NTPase_1  84 lalealrkal.seadviviDEiGkmElkskkfke 116
                 ++ +a++ a  ++ dv++ D  G++  k++ ++e
  EGE27080.1 179 VIFDAMQSAKaKGIDVLIADTAGRLQNKTHLMNE 212
                 566777777768899********99999876654 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   9.1e-05     0.048      31      62 ..     107     138 ..      94     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.1e-05
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldkeky 62 
                 k+ + +l+vG  G+GKt++i +l k+l++e  
  EGE27080.1 107 KKPYVILMVGVNGVGKTTTIGKLAKRLQNEGK 138
                 566779********************996654 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   0.00016     0.086      21      73 ..      69     155 ..      51     236 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00016
                 .......................................TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHH CS
      ResIII  21 s.....................................krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtlee 73 
                 +                                     k+   +l++   G+GKT ++ kl++rl+++gk    ++l+ + +    + e+
  EGE27080.1  69 EqtargdliyshalykalkteltdiltpkvapliidttKKPYVILMVGVNGVGKTTTIGKLAKRLQNEGK---SVMLAAGDTFRAAATEQ 155
                 44444555555555555555666677777777777744444455667789****************9755...67777666655555555 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00075      0.39      10      51 ..     115     156 ..     108     168 .. 0.88
   2 ?    2.8   0.1      0.13        69      21      60 ..     180     218 ..     166     236 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00075
        KdpD  10 GaapGvGktyamLeeaqelkeegvdvviglvethgrketeal 51 
                   ++GvGkt ++ + a++l++eg+ v++++ +t + + te+l
  EGE27080.1 115 VGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAATEQL 156
                 5578*************************9999988888876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.13
        KdpD  21 mLeeaqelkeegvdvviglvethgrketealleglevipr 60 
                 + ++ q++k++g+dv+i+      +++ ++l+++le + r
  EGE27080.1 180 IFDAMQSAKAKGIDVLIADTAGRLQNK-THLMNELEKVVR 218
                 5566788999*******9766555444.457788887765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   0.00013     0.068       9      62 ..     108     156 ..     101     251 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00013
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerl 62 
                 k  v+l+++  G GKT+++ +  + l+++g+     +l++  t rAa   +e+l
  EGE27080.1 108 KPYVILMVGVNGVGKTTTIGKLAKRLQNEGK---SVMLAAGDTFRAAA--TEQL 156
                 45577888999**************999994...35677777888875..3444 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.4   1.3e+03     179     236 ..      16      75 ..      11      93 .. 0.73
   2 ?    5.6   0.0     0.011       5.7      25      58 ..     104     137 ..     100     141 .. 0.87
   3 ?    4.0   0.0     0.033        17     139     220 ..     151     243 ..     143     250 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.4
      AAA_32 179 eleekseeleeeleeilrelrelekeakeklke..lerevakeaveplleelkekykdle 236
                  l ++s++l+e l ++l   +++++e+ e++++  l  ++  +a ++++++l e+ ++ +
  EGE27080.1  16 GLSKSSKNLSEGLVNVLVGGKQIDDELLEEVEDqlLVADIGVNATNRIIKNLTEQTARGD 75 
                 567778888888888888888888888888865446778888888888888888776654 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.011
      AAA_32  25 kikkkgYNifvlGesgtGrttlvkrlleeiakke 58 
                 + +kk Y i ++G +g+G+tt++ +l ++ +++ 
  EGE27080.1 104 DTTKKPYVILMVGVNGVGKTTTIGKLAKRLQNEG 137
                 567899********************99988765 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.033
      AAA_32 139 aeekgfalkrtpegivlvPlkdgkplseeefealpeeerkele..........ekseeleeeleeilrelrelekea.keklkelerevakea 220
                 a+++++++  + +gi+++++ +g+  ++  f+a+++++ k ++          +++++l +ele+++r +++ +++a +e +  l+  + ++a
  EGE27080.1 151 AATEQLQIWGERNGIAVIAQGHGSDSASVIFDAMQSAKAKGIDvliadtagrlQNKTHLMNELEKVVRVMKKGDETApHETMIVLDAGTGQNA 243
                 444555555555555555555555555555555555555555544444444445667888899999998888777652344555555555555 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00026      0.13       4      78 ..     112     183 ..     109     192 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00026
                 EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.TTSSS--GGGHHHHHHHHHHHHHHHHTT.SEEEE-S CS
       KTI12   4 vvltGlPssGKstrakeLakaleeekrsvvviddeslgiekdsykdsakekalRsslrsavkrdLskekvVIvDs 78 
                 +++ G+  +GK+t   +Lak l++e++sv++   ++++ +  +   + +    R+ +   ++ + s +  VI D+
  EGE27080.1 112 ILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAATE---QLQIWGERNGIAVIAQGHGSDSASVIFDA 183
                 7899***************************999999855544...33333444445555555555555555555 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   0.00025      0.13       3      38 ..     111     146 ..     110     153 .. 0.93
   2 ?   -0.5   0.0         1   5.5e+02     116     134 ..     183     201 ..     150     255 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
                  EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   3 vilvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  vil+ G  GVGKtt    +a +l ++gk+v+l + D
   EGE27080.1 111 VILMVGVNGVGKTTTIGKLAKRLQNEGKSVMLAAGD 146
                  7999**************************997766 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1
                  HHHHHHCSSSSEEEEESBS CS
  ArsA_ATPase 116 llkyvkeeeydvvvlDtaP 134
                   ++  k++  dv++ Dta 
   EGE27080.1 183 AMQSAKAKGIDVLIADTAG 201
                  4455566667777777763 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00097      0.51      16      47 ..     110     141 ..      95     149 .. 0.83
   2 ?    0.8   0.0      0.34   1.8e+02      23      56 ..     171     204 ..     158     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00097
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekllrairargdrai 47 
                      il+vG  G GKt+++ kl + +++ g+ ++
     EGE27080.1 110 YVILMVGVNGVGKTTTIGKLAKRLQNEGKSVM 141
                    5689*******************999998765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.34
  TrwB_AAD_bind  23 ttGsGKtqalekllrairargdraivlDltGafv 56 
                    + Gs    ++ + +++++a+g  ++++D+ G + 
     EGE27080.1 171 GHGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQ 204
                    5667777889999*****************9875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00075      0.39       1      26 [.     112     137 ..     112     197 .. 0.76
   2 ?   -1.2   0.0         5   2.6e+03      50      93 ..     229     270 ..     203     275 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00075
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   i+++G +g+GK+t++ +Lak+l+++ 
    EGE27080.1 112 ILMVGVNGVGKTTTIGKLAKRLQNEG 137
                   6789******************9665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 5
  RNA_helicase  50 qevvvidDfgqvkdeenpsdlaelirlvsstpyplnmasleekg 93 
                   +e +++ D g  ++    ++++ + ++v+ t + + + +   kg
    EGE27080.1 229 HETMIVLDAGTGQNA--INQVQVFSEAVNLTGISVTKLDGTAKG 270
                   445566666655555..456666666666666666666555555 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00027      0.14      12      94 ..     119     202 ..     111     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00027
       VirC1  12 GaGkttalmglcsalasdgkrvalfeadenrPltkwkenalr...kgawddacevfvadelplleaayeeaegeGfdyaladtrgG 94 
                 G Gktt++  l   l ++gk v l  +d  r  +   e+ +    ++      + + +d  +++ +a + a+++G d+ +adt g 
  EGE27080.1 119 GVGKTTTIGKLAKRLQNEGKSVMLAAGDTFRAAAT--EQLQIwgeRNGIAVIAQGHGSDSASVIFDAMQSAKAKGIDVLIADTAGR 202
                 89**********************99999886543..3222200022333333344578899999*****************9875 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00042      0.22       1      30 [.     111     140 ..     111     147 .. 0.92
   2 ?   -1.9   0.0       5.3   2.8e+03      69      76 ..     208     215 ..     170     257 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00042
        MobB   1 vlgivgksgsGKTtLleklipelkarglrv 30 
                 v+ +vg +g GKTt + kl + l+++g +v
  EGE27080.1 111 VILMVGVNGVGKTTTIGKLAKRLQNEGKSV 140
                 6789**********************9887 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.3
        MobB  69 alikelee 76 
                  l++ele+
  EGE27080.1 208 HLMNELEK 215
                 33333322 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00049      0.26      43      71 ..     106     135 ..      83     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00049
       Rad17  43 rkkr.iLLisGPsGCgkstvvkvLskelgi 71 
                  kk  ++L+ G  G gk+t++  L+k l  
  EGE27080.1 106 TKKPyVILMVGVNGVGKTTTIGKLAKRLQN 135
                 3333699*******************9865 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.0    0.0012      0.64       2      87 ..     112     241 ..     111     263 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0012
                 EEEEESTTSSHHHHHHHHHTS....TEEESSSTTSSSSE.EEEEEE.ETTEE..............................EEEEECGGCSS.HHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge....kaivsdkpgtTrdi.negrvk.lkgke..............................ielvDtpGlie.gasee 63 
                 ++ vG   vGK+t i +l ++       v   +g T     +++++ +++++                              + ++Dt+G ++ + +  
  EGE27080.1 112 ILMVGVNGVGKTTTIGKLAKRlqneGKSVMLAAGDTFRAaATEQLQiWGERNgiaviaqghgsdsasvifdamqsakakgidVLIADTAGRLQnKTHLM 210
                 6789**************9854322234455555554442444455322223566666666677777777777777777777********765222222 PP

                 H...HHHHHHHHHHC.T.SEEEEEEETT..T CS
    MMR_HSR1  64 k...glgkaflalee.a.dlillvvdas..e 87 
                 +   ++ + +++ +e a +  ++v+da   +
  EGE27080.1 211 NeleKVVRVMKKGDEtApHETMIVLDAGtgQ 241
                 2112344444443334456677777766443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       887  (0.0494729); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 2087.54
//
Query:       EGE27081.1  [L=197]
Description: methylated-DNA--protein-cysteine methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-29   99.7   0.0    1.3e-28   98.9   0.0    1.4  1  DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA b


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.0   7.3e-33   1.3e-28       1      79 [.      99     177 ..      99     179 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 7.3e-33
                    HHHHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTTCHHHHHHHHHHT CS
  DNA_binding_1   1 afqqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklggyagglerkralLeaE 79 
                    +fqq+Vw++l +I yG++++Y+++A l+ kpka ra ++a+++npl+++vPcHRVv++dg lggy+gg+++k+alL+ E
     EGE27081.1  99 QFQQQVWAALLTIDYGQTISYAKLATLIDKPKAFRACANANGKNPLSLIVPCHRVVASDGGLGGYTGGVAIKKALLDFE 177
                    59**************************************************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1550.99
//
Query:       EGE27082.1  [L=341]
Description: dihydroorotate dehydrogenase 2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-80  271.1   0.1    1.3e-80  270.8   0.1    1.0  1  DHO_dh    Dihydroorotate dehydrogenase
  ------ inclusion threshold ------
      0.022   14.1   0.3      0.036   13.5   0.3    1.2  1  NMO       Nitronate monooxygenase
       0.12   11.3   0.2       0.21   10.6   0.2    1.4  1  FMN_dh    FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.8   0.1   2.1e-84   1.3e-80       2     291 ..      44     335 ..      43     337 .. 0.95

  Alignments for each domain:
  == domain 1  score: 270.8 bits;  conditional E-value: 2.1e-84
                 G-EEETTEEESSSEEE-TTSSTTSSSHHHHHCTTSSEEEEEEE-SS-B--S-S--EEEETTCTEEEE---S-BS-HHHHHHHHHHHHHHHHCC.CEEEE CS
      DHO_dh   2 latkvlglkfknpiglAaGfdkegeeilkllklgfgaieigsvtpkpqeGnpkPrvfrlkedrsvlNslGlnneGldavlekllkrrkeqeekkelgin 100
                 l t+++g+ + np+glAaG+dk+g  i++l +lgfg++eig+vtpkpq Gn+kPr+fr+ke + ++N++G+nn+G+d++++++++ +  ++    lgin
  EGE27082.1  44 LPTECMGISLLNPVGLAAGLDKNGAYIDALSELGFGFLEIGTVTPKPQMGNDKPRLFRIKEANGIINRMGFNNHGVDVMIDNIEQAK--YQG--VLGIN 138
                 6799******************************************************************************99876..444..79*** PP

                 EEE-TTS..S.HHHHHHHHHHHHGGGESEEEEES-SCTCCTSCCCGCHHHHHHHHHHHHHHHH........SSEEEEEE-SSSSHHHHHHHHHHHHHHT CS
      DHO_dh 101 lskakkt..enavddyvevvrkigpfadilelNvSsPntpglrdlqekeelkaillkvvkevs........kvpvlvKlaPdltdeekkdiadvllelk 189
                 ++k+ +t  ena ddy+++++++ p+a+++ +N+SsPnt+ lr+lq+ ++l++ l   ++            vp+  K+aPdl  ++++di   +  ++
  EGE27082.1 139 IGKNATTpvENALDDYIYCLERVYPYASYITINISSPNTKNLRNLQSGDALSQLLDGIKNCQLrlandygfYVPLALKIAPDLDLSQIDDISRTVIDFE 237
                 *******999*****************************************98876665544488999******************************* PP

                 ECEEEE...BSEE--CTTCCGCCCCTTSSEEEEEGGGHHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHH CS
      DHO_dh 190 ldgiivtNttvqrlaidlkseknvkanktGGlsGkalkdialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkik 288
                 +dg+i+tNtt++r+   ++ +++ ++  +GGlsG+++   ++ ++ ++++r+ +++ +IgvGGie+ge a+ k++aGA +vq+y++l+++gp ++ +  
  EGE27082.1 238 IDGLIATNTTLSRT--GVEGFRHGEE--AGGLSGRPVNHQSTLILSQFADRIADKVDLIGVGGIETGELAVKKLHAGAKAVQLYSGLIYKGPGLVTDCV 332
                 **************..9999999997..****************************************************************9998877 PP

                 HHH CS
      DHO_dh 289 kel 291
                 + l
  EGE27082.1 333 QAL 335
                 765 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3     6e-06     0.036     163     224 ..     258     319 ..     256     326 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6e-06
         NMO 163 qGpeaGGhqGtpevgdkglfaLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqigtr 224
                  G eaGG  G ++v+++  + ++ q +d ++  + +i  GGi +++     L +GA++vq+ + 
  EGE27082.1 258 HGEEAGGLSG-RPVNHQ-STLILSQFADRIAdkVDLIGVGGIETGELAVKKLHAGAKAVQLYSG 319
                 599*******.778645.55556666665555899***********99999*********9665 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   3.5e-05      0.21     258     299 ..     275     316 ..     266     338 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.5e-05
                 HHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEE CS
      FMN_dh 258 idvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavll 299
                   +L + +++++++++++  gGi +G+ ++k l  GA+av l
  EGE27082.1 275 TLILSQFADRIADKVDLIGVGGIETGELAVKKLHAGAKAVQL 316
                 45799999********************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2562.53
//
Query:       EGE27083.1  [L=170]
Description: colicin V production protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-24   84.8  17.4    6.6e-24   84.5  17.4    1.1  1  Colicin_V  Colicin V production protein


Domain annotation for each model (and alignments):
>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5  17.4   3.7e-28   6.6e-24       1     140 [.       4     141 ..       4     145 .. 0.96

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 3.7e-28
   Colicin_V   1 lDliillilllsallGlrrGfvrevlsllgwvvafvvasllypslaellaelilspalaaiiaflllfllvllivsllgallsklvsktglglldrllG 99 
                 +D+ii +++ll++++G+  G +++++ ll+w++a+vvas+ ++s+++++a++i +p+l  ++af++++l+++l+v+ +++lls+ +++  lg ldr+ G
  EGE27083.1   4 IDIIISIVVLLGIWRGFTVGMIKSMAMLLSWFIALVVASKTANSFSHIFAPWIDNPVLQVAMAFIVIMLITVLLVGTVASLLSRSFKALKLGFLDRIGG 102
                 8************************************************************************************************** PP

   Colicin_V 100 aifGllkglllvvllllllalvplpkvqewlqnSvlaplle 140
                  +fG++ g+l v ++l++++ + +  +  + q+Svl+p l 
  EGE27083.1 103 SVFGAATGMLKVLIVLSIISPILMLTP--AAQSSVLVPSLL 141
                 *******************99998876..799999999664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1020  (0.0568911); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1306.72
//
Query:       EGE27084.1  [L=509]
Description: amidophosphoribosyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-18   65.3   0.0    1.3e-17   64.3   0.0    1.6  1  GATase_6      Glutamine amidotransferase domain
    1.4e-16   60.5   0.0    3.3e-16   59.3   0.0    1.7  1  GATase_7      Glutamine amidotransferase domain
    6.8e-09   35.4   0.0    2.8e-08   33.4   0.0    2.0  2  Pribosyltran  Phosphoribosyl transferase domain
    0.00026   20.0   0.0    0.00037   19.5   0.0    1.3  1  GATase_4      Glutamine amidotransferases class-II
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.034   13.6   0.0    1.4  1  UPRTase       Uracil phosphoribosyltransferase
      0.055   13.4   0.0        1.2    9.1   0.0    3.0  3  YAcAr         YspA, cpYpsA-related SLOG family
       0.13   11.8   0.0       0.25   10.8   0.0    1.4  1  PRTase_2      Phosphoribosyl transferase


Domain annotation for each model (and alignments):
>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   5.1e-21   1.3e-17       7     133 ..      61     207 ..      36     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 5.1e-21
    GATase_6   7 aslvedevalaHvRlaivglaeeegaqPf.psedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall......eelG............. 85 
                 ++lv++ ++++HvR  + g++ +++aqP+ +++  +++l+hNG   n+++l++el ++++++++++sD+evll+++                       
  EGE27084.1  61 TRLVGN-CGIGHVRYPTAGTSSTAEAQPLyVNSPYGIALAHNGNLTNAEKLARELYEEDRRHLNTQSDSEVLLNIFahelqkF--Tkpalesddifeal 156
                 344444.**************99999***9999999**************************************888666440..25566666777777 PP

    GATase_6  86 eevlerlrGmfafaiwdk.rentlilardrlgvkplyyavd....esglafas 133
                 +++++r++G+f +  +   + ++l+  rd  g++pl+y+      +   ++as
  EGE27084.1 157 TKLYKRCQGAFGV--VALiTGHGLVAFRDPNGIRPLVYGRRltekGIEYMVAS 207
                 7777899**6666..455256666666***********987764444555666 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   1.3e-19   3.3e-16       8     122 ..      80     213 ..      71     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.3e-19
    GATase_7   8 dseagaQPmvssedgrlvivfnGeiyNykelreeLeakg.hrfrtksDtevllallea................ewgeealerlnGmfAfaiwdeeekr 89 
                  s a+aQP++ ++   +++++nG ++N ++l +eL +++  + +t+sD+evll+++++                e ++++++r++G f ++ + + +  
  EGE27084.1  80 SSTAEAQPLYVNSPYGIALAHNGNLTNAEKLARELYEEDrRHLNTQSDSEVLLNIFAHelqkftkpalesddifEALTKLYKRCQGAFGVVALITGH-G 177
                 57889*****977777******************988751578**********************************************98887777.7 PP

    GATase_7  90 lllaRDrlGikPLyygedk...gdallfaSelkall 122
                 l++ RD+ Gi+PL yg++    g ++++aSe  al+
  EGE27084.1 178 LVAFRDPNGIRPLVYGRRLtekGIEYMVASESVALQ 213
                 ****************9876567799*****99997 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.1e-11   2.8e-08       4     121 ..     269     395 ..     267     406 .. 0.87
   2 ?   -1.8   0.0      0.78     2e+03      96     111 ..     417     432 ..     416     435 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.1e-11
                   HTTT---EEEEEEETTEEEEEE..--GGGEEEEEEETTTHHHHHHHHHHSTT-EE.-EEEEEE-TTT--EE..............EE----TTSEEE CS
  Pribosyltran   4 ellenpaildavarlaaeilee..yngkpdvvvgiargGvpfakiladeLevpla.yvrkvkyrpdgseeaargssdes......rlledpagkkVl 91 
                   ++  ++a ++  ++la +il+e   ++ +dvv++i+  +   a +la +L+v++    +k +y + +     +++ + s        + ++++k Vl
    EGE27084.1 269 NISVHKARMRMGEKLADQILREwgEDHGIDVVIPIPDTSRNSALELAVRLNVKYReGFNKNRYIGRTFIMPGQQQRKKSvrqklnAVPLEFKNKNVL 365
                   5566778888899*********9999999**********************996659******99987655555555556668999999******** PP

                   EE-SEESSSHHHHHHHHHHHCC-BSEEEEE CS
  Pribosyltran  92 iVDDildtGgTllaalelLkekgpeevria 121
                   +VDD +  G+T  ++++  +++g+++v +a
    EGE27084.1 366 LVDDSIVRGTTCYEIIQMARDAGAKKVFFA 395
                   *************************99777 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.78
                   EESSSHHHHHHHHHHH CS
  Pribosyltran  96 ildtGgTllaalelLk 111
                   ++++G+++++++e++ 
    EGE27084.1 417 LISSGRSVEEVCEIIG 432
                   689*********9876 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.5e-07   0.00037      72     187 ..      66     183 ..       1     198 [. 0.79

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.5e-07
    GATase_4  72 knvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpkl.....egrfePvGsTDsElafCelleelasrfekaepsaeeleralaelake 165
                 +  + H+R  t G+ + ++++p   +     + +AHnG+l++ ++       e+r +   + DsE+ + ++ +el++ + k + + +++++al++l k+
  EGE27084.1  66 NCGIGHVRYPTAGTSSTAEAQPLYVN-SPYGIALAHNGNLTNAEKLArelyeEDRRHLNTQSDSEVLLNIFAHELQKFT-KPALESDDIFEALTKLYKR 162
                 55689****************97644.345689*******8855544444766666777899******99999999888.45688999********998 PP

    GATase_4 166 iaelGvfnll.lsdgralfahas 187
                  +  G f ++ l  g+ l+a+++
  EGE27084.1 163 CQ--GAFGVVaLITGHGLVAFRD 183
                 74..4444432567777888877 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-05     0.034     105     158 ..     345     396 ..     334     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
     UPRTase 105 tlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvls 158
                 +++ ++ +n +P ++++++vll+D  i  G ++ ++iq+ +++  g +k++++s
  EGE27084.1 345 KKSVRQKLNAVPLEFKNKNVLLVDDSIVRGTTCYEIIQMARDA--GAKKVFFAS 396
                 344557889999999***************************5..567898876 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.63   1.6e+03      28      48 ..      92     113 ..      87     118 .. 0.85
   2 ?   -1.3   0.0      0.87   2.2e+03      17      37 ..     152     175 ..     148     177 .. 0.75
   3 ?    9.1   0.0   0.00048       1.2      37      66 ..     279     308 ..     260     309 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.63
       YAcAr  28 apidmvlvhGga.kGaDrlAar 48 
                  p  ++l+h g+ + a++lA++
  EGE27084.1  92 SPYGIALAHNGNlTNAEKLARE 113
                 566789*************985 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.87
       YAcAr  17 iwatLdklhaeapi...dmvlvhG 37 
                 i+++L kl++++      ++l++G
  EGE27084.1 152 IFEALTKLYKRCQGafgVVALITG 175
                 8999*****999865555666666 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00048
       YAcAr  37 GgakGaDrlAarWAaergvelvrfpaDwkr 66 
                  g+k aD++ ++W +++g+++v   +D +r
  EGE27084.1 279 MGEKLADQILREWGEDHGIDVVIPIPDTSR 308
                 57889****************998888776 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.8e-05      0.25     120     150 ..     360     390 ..     347     397 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.8e-05
    PRTase_2 120 aakelvLvDDEistGktalnliralqeklpr 150
                 ++k+++LvDD i  G+t+ ++i+  +++  +
  EGE27084.1 360 KNKNVLLVDDSIVRGTTCYEIIQMARDAGAK 390
                 56889*****************988776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3638.84
//
Query:       EGE27085.1  [L=468]
Description: putative lytic murein transglycosylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-89  298.9   0.2    4.7e-89  298.5   0.2    1.2  1  SLT_2         Transglycosylase SLT domain
      1e-06   28.8   0.3    2.7e-06   27.5   0.3    1.8  1  PG_binding_1  Putative peptidoglycan binding domain
     0.0026   18.0   0.0      0.008   16.5   0.0    1.8  2  PG_binding_2  Putative peptidoglycan binding domain
  ------ inclusion threshold ------
        0.1   12.8   0.3       0.24   11.7   0.3    1.7  1  PG_binding_3  Predicted Peptidoglycan domain


Domain annotation for each model (and alignments):
>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.5   0.2     1e-92   4.7e-89       2     291 .]     103     390 ..     102     390 .. 0.98

  Alignments for each domain:
  == domain 1  score: 298.5 bits;  conditional E-value: 1e-92
       SLT_2   2 feawlaelkeeaaaegiseetleaalagvepkprvieldkkqaefkktleeYlkrfvtekriakGraflkehaallariekeyGVpaeiivAiwgvEtr 100
                 f++w++++ ++a a+gi+++ l+a++ ++++++rvield++qaef+k  +eY++++ +++ri++Gr++l+e+ ++l+++e+ yG p+ei +Aiwg+E++
  EGE27085.1 103 FAEWKHDFIHRALAKGINANSLNALMGNATLNQRVIELDRSQAEFTKMPWEYVESAASSNRISQGRSKLNENLSILTSAESIYGTPKEITAAIWGMESS 201
                 899************************************************************************************************ PP

       SLT_2 101 yGkntgkfrvldalatlafdgrRseffrkeliaalklldegdvdpeelkGSwaGamGltQFmPssylkyAvDfdgdgrrDlwnspaDalaSvAnyLkkh 199
                 yG+ +g++++++al++la+dgrR+ef++++l+a+l ++++gdv++++lkGSwaG mG+tQF+P+++ +  +D+d +gr++ wn  +Dal S+A+yL+++
  EGE27085.1 202 YGAGMGSMDLVSALSSLAYDGRRREFAENQLLAMLLMIERGDVAASQLKGSWAGGMGHTQFIPTTWIQESIDGDANGRKNPWN-RQDALTSTASYLANA 299
                 **********************************************************************************9.9************** PP

       SLT_2 200 gWqagepwgvevklpaefdellagkkkplaewaalgvkraegka..paaekaeaslllpagekgpaflvlknfkvitrYNrStlYalaVaelad 291
                 gW +g +  +ev+lp++fd l+ ++k++l++w+alg+ +a+g+         ea+l+lpag+ gpa+l +knf+vi+ YN+S++Yal V  la+
  EGE27085.1 300 GWIRGLQPFYEVRLPTGFDFLQLNSKRSLDAWKALGLVSASGEYfgG---VHEAQLWLPAGQYGPALLLTKNFEVIRVYNNSSSYALGVSLLAK 390
                 ********************999889999************987532...46889***********************************9995 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.3   5.9e-10   2.7e-06       3      54 ..     412     463 ..     410     466 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 5.9e-10
                   HHHHHHHHHHHHTT--.SSSSSB--HHHHHHHHHHHHHTTST-SSSBSHHHH CS
  PG_binding_1   3 edvkelqryLsrlGylsgpadgtfgpateeaVkefQqffgLpvtGildpaTl 54 
                    ++ +lq+ L++ Gy+++ +dg+ g+ t++a  ++Q ++g  ++G + + T 
    EGE27085.1 412 TQIINLQKNLTAQGYDTQGIDGVAGSNTRQAFARWQAANGQIPDGFISQRTA 463
                   67899****************************************9888885 PP

>> PG_binding_2  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.2   9.9e+03      23      35 ..     213     224 ..     210     235 .. 0.67
   2 !   16.5   0.0   1.8e-06     0.008       4      54 ..     400     450 ..     398     451 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.2
  PG_binding_2  23 aaLsrLGyydgea 35 
                   +aLs+L y dg  
    EGE27085.1 213 SALSSLAY-DGRR 224
                   79999999.5443 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.8e-06
  PG_binding_2   4 erkpeeervlaedvaeevqaaLsrLGyydgeaggafrealrdALrafiave 54 
                   ++ p +e +l  + + ++q+ L + Gy     +g+++ ++r+A++ ++a +
    EGE27085.1 400 QSWPRHEQPLSRTQIINLQKNLTAQGYDTQGIDGVAGSNTRQAFARWQAAN 450
                   566889999******************9999*****************987 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   5.4e-05      0.24       4      36 ..     415     449 ..     412     463 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.4e-05
                   HHHHHHHT.....S-.--S---HHHHHHH....HH CS
  PG_binding_3   4 vilQriLgklgydvk.vDGiiGpkTlaAve.aras 36 
                     lQ+ L  +gyd++ +DG+ G +T++A   ++a+
    EGE27085.1 415 INLQKNLTAQGYDTQgIDGVAGSNTRQAFArWQAA 449
                   569****8888888769***********9444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3378.81
//
Query:       EGE27086.1  [L=704]
Description: excinuclease ABC subunit B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-32  112.1   0.1    3.2e-32  110.6   0.1    1.9  1  UvrB_inter       UvrB interaction domain
    3.7e-22   77.9   2.4    4.4e-22   77.6   0.9    2.0  2  UvrB             Ultra-violet resistance protein B
    1.6e-19   70.3   0.3    1.6e-18   67.1   0.0    2.5  3  Helicase_C       Helicase conserved C-terminal domain
    3.2e-10   40.3   0.0      3e-09   37.1   0.0    2.3  2  ResIII           Type III restriction enzyme, res subunit
    9.6e-08   31.5   5.6    9.6e-08   31.5   5.6    2.5  2  UVR              UvrB/uvrC motif
     0.0004   20.2   0.1      0.031   14.0   0.0    2.8  3  DEAD             DEAD/DEAH box helicase
     0.0079   15.9   0.0      0.058   13.1   0.0    2.3  2  AAA_30           AAA domain
     0.0084   15.1   0.0      0.015   14.2   0.0    1.3  1  Kinesin          Kinesin motor domain
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.097   12.8   0.0    2.3  2  DUF87            Helicase HerA, central domain
      0.025   15.0   0.0       0.38   11.2   0.0    3.0  3  AAA              ATPase family associated with various cellul
      0.038   14.3   0.6        9.3    6.6   0.1    2.7  2  AAA_19           AAA domain
      0.046   13.7   0.0       0.12   12.3   0.0    1.8  1  Microtub_bd      Microtubule binding
       0.08   12.9   0.0       0.19   11.8   0.0    1.5  1  Collagen_bind_2  Putative collagen-binding domain of a collag
       0.19   10.7   0.1       0.35    9.8   0.1    1.3  1  Corona_RPol_N    Coronavirus RPol N-terminus


Domain annotation for each model (and alignments):
>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.1   2.5e-35   3.2e-32       1      91 []     195     285 ..     195     285 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 2.5e-35
  UvrB_inter   1 lelkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpasaeevairieffgdeiesireidpltgkslekleeitifPakhf 91 
                 l++ vg+++ r+ ++++LvelqYern++++ rGt+r+rG+t++i+pa++e+ a+ri++f+deie+i+++dpltgk ++++ +iti+P++h+
  EGE27086.1 195 LHIVVGDRVHRDAVIKRLVELQYERNELDFGRGTYRIRGETLDIYPAESESLAVRIQMFDDEIEKITWFDPLTGKNIKSVPRITIYPKSHY 285
                 899*********************************************9999**************************************9 PP

>> UvrB  Ultra-violet resistance protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         9   1.2e+04       7      19 ..      82      94 ..      82     103 .. 0.72
   2 !   77.6   0.9   3.4e-25   4.4e-22       1      42 [.     587     628 ..     587     629 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9
                -HHHHHHHHHHHH CS
        UvrB  7 TdSMkkAideTer 19
                T  M k i+e  r
  EGE27086.1 82 TYTMAKVIAECGR 94
                5679999998754 PP

  == domain 2  score: 77.6 bits;  conditional E-value: 3.4e-25
                 EE-SS--HHHHHHHHHHHHHHHHHHHHHHHHT------XXXX CS
        UvrB   1 lYADkiTdSMkkAideTerRReiQeaYNeehgItPktikKki 42 
                 lYAD+iT SM+kAideTerRR++Q+a+N+ehgItPk+ +++i
  EGE27086.1 587 LYADTITPSMQKAIDETERRRAKQIAFNQEHGITPKSASRAI 628
                 8*************************************9998 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   1.2e-21   1.6e-18      10     109 ..     476     579 ..     466     581 .. 0.89
   2 ?    0.8   0.0      0.46   5.9e+02      14      65 ..     580     635 ..     579     656 .. 0.72
   3 ?   -2.4   0.0       4.6   5.9e+03      40      72 ..     666     697 ..     624     700 .. 0.71

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 1.2e-21
                 HHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.....SSHHHHHH CS
  Helicase_C  10 lkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.....rnvtsyiq 102
                 l +++ ++++li + t++++e+ +++l ++ gikva+lh+++ + er +i+++ + g +dvL+  + + +G+d+p+v+lV +fd++     r+ +s+iq
  EGE27086.1 476 L-KKSLDERVLITTLTKRMAEDlTSYL-KEYGIKVAYLHSDIDTVERMKIIHELRTGIFDVLVGINLLREGLDMPEVSLVAIFDADkegflRSERSLIQ 572
                 3.5677899*********999977777.5569******************************************************88888889***** PP

                 HHTTSSS CS
  Helicase_C 103 riGRtgR 109
                  iGR++R
  EGE27086.1 573 TIGRAAR 579
                 ******9 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.46
                 TTTSEEEEEESSHH.HHHHHHHHHHHT.....TSTEEEESTTSTHHHHHHHHHHHHTT CS
  Helicase_C  14 eeggkilifvntid.rlekvklllekk.....gikvavlhgelpqnereeileqfnkg 65 
                 +++gk+++++ ti+ +++  k + e++     +i +   hg +p++  ++i ++   g
  EGE27086.1 580 HVNGKAILYADTITpSMQ--KAIDETErrrakQIAFNQEHGITPKSASRAITDKIDTG 635
                 67899*********9665..34422222235589999999999999999999888754 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.6
                 TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEE CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkgesdvLia 72 
                 + ++a+l  ++++ +re  +e+  ++ +d +ia
  EGE27086.1 666 AKEIARLEKQMQALSRELKFEEA-AKVRDTVIA 697
                 56788888899998888888887.555566665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   2.3e-12     3e-09       4      96 ..      49     152 ..      46     218 .. 0.69
   2 ?    0.3   0.0      0.47     6e+02     134     148 ..     363     388 ..     282     434 .. 0.64

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.3e-12
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.....................G CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke.................i 85 
                 +   Q +ai +l++ ++  + +  l+   TG+GKT+++ak+i+++ +      +++++++k+l  q++ efk f+++++ e                  
  EGE27086.1  49 PSGDQPKAIAELVKGVE-ADMRGQLLLGVTGSGKTYTMAKVIAECGR-----PAIIMAHNKTLAAQLYGEFKAFFPNNAVEyfvsyydyyqpeayvpaS 141
                 566799*********98.888888899*******************9.....79***********************9866666655555444444443 PP

                 EEEESSS-B-- CS
      ResIII  86 gkkvsgdkkka 96 
                  +++++d+ ++
  EGE27086.1 142 DTFIEKDSAIN 152
                 33333333333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.47
                 S......EEEEETGGGTTS......T CS
      ResIII 134 d......viiiDEaHrlgak.....k 148
                 d      +++iDE+H +  +     k
  EGE27086.1 363 DyipsdaLLFIDESHVTVPQigamyK 388
                 25556668999999987766554440 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3         6   7.6e+03      11      23 ..     300     312 ..     300     313 .. 0.81
   2 !   31.5   5.6   7.5e-11   9.6e-08       2      35 ..     667     700 ..     666     701 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6
         UVR  11 meeAaenedFEkA 23 
                 +ee+a+++++ +A
  EGE27086.1 300 KEELAQRLEYFRA 312
                 7899999999666 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 7.5e-11
         UVR   2 klikeLeeemeeAaenedFEkAAklRDqinalkk 35 
                 k+i +Le++m+ +++++ FE+AAk+RD + alk+
  EGE27086.1 667 KEIARLEKQMQALSRELKFEEAAKVRDTVIALKE 700
                 79******************************98 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.4e-05     0.031       4      75 ..      53     121 ..      51     167 .. 0.75
   2 ?   -2.5   0.0       2.8   3.6e+03     160     171 ..     423     435 ..     372     440 .. 0.75
   3 ?    2.6   0.0     0.077        99      43     103 ..     477     537 ..     460     559 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHTT.....CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST CS
                 xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   4 Qaeaiplilgg.....gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid 75 
                 Q +ai ++++g     +  l+ + TGsGKT  ++  +         + g  a+i++  + La q + ++k f+ +  
  EGE27086.1  53 QPKAIAELVKGveadmRGQLLLGVTGSGKTYTMAKVIA--------ECGRPAIIMAHNKTLAAQLYGEFKAFFPNNA 121
                 556666666554444455567889******99666655........67889*********************98644 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.8
                 SEEEEEESSBS.H CS
                 xxxxxxxxxxx.x RF
        DEAD 160 rqvivlSATlp.k 171
                   +i++SAT+   
  EGE27086.1 423 PATIFVSATPAqY 435
                 3489999999744 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.077
                 TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
        DEAD  43 kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvg 103
                 k++   ++li + t+ +ae+  + lk+++ ++   +++ i  v++ + + +l+ g  d++vg
  EGE27086.1 477 KKSLDERVLITTLTKRMAEDLTSYLKEYGIKVA-YLHSDIDTVERMKIIHELRTGiFDVLVG 537
                 455556778888788888888888887777644.3446689999999999998888999998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   4.6e-05     0.058       6      67 ..      53     114 ..      49     175 .. 0.74
   2 ?   -0.8   0.0      0.84   1.1e+03      46      75 ..     481     513 ..     470     537 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.6e-05
      AAA_30   6 Qaaaveallts...gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelg 67 
                 Q +a+++l+++   + r ++l G+ G+GKt++++++   +++ g++ i++A++++ A++L  e+ 
  EGE27086.1  53 QPKAIAELVKGveaDMRGQLLLGVTGSGKTYTMAKV---IAECGRPAIIMAHNKTLAAQLYGEFK 114
                 55555555543111446799*************875...55668999999*99999999976655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.84
      AAA_30  46 ggrviglAptgkaAkvLa...eelgieastiak 75 
                  +rv++ + t+++A++L+   +e gi+ + +++
  EGE27086.1 481 DERVLITTLTKRMAEDLTsylKEYGIKVAYLHS 513
                 689999999999999999555577776666655 PP

>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.2e-05     0.015      36      96 ..      34      91 ..       2     137 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                CTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC..T CS
     Kinesin 36 keeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk..e 96
                ++ ++++f+    f+++ +q +   e    lv+ v   + +  +  G+tgsGKTyTm     e
  EGE27086.1 34 TQISSQAFEMVTDFEPSGDQPKAIAE----LVKGVEADMRGQ-LLLGVTGSGKTYTMAKViaE 91
                44444444444445555555544444....344443333333.346***********976443 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.6e-05     0.097      28      48 ..      73      93 ..      69     159 .. 0.82
   2 ?   -2.2   0.0       2.9   3.7e+03     152     183 ..     287     320 ..     240     341 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.6e-05
       DUF87 28 ilgsTGsGKSntvavLleell 48
                 lg TGsGK++t+a  ++e  
  EGE27086.1 73 LLGVTGSGKTYTMAKVIAECG 93
                69************9998865 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.9
       DUF87 152 kekeelrklknqaiarlldkledllrkggsf..s 183
                 + k++l+ ++  ++++l ++le++  + +++  +
  EGE27086.1 287 TPKDKLEAASATIKEELAQRLEYFRANDKFIeaQ 320
                 4456677777777777888888887777777331 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0003      0.38       2      41 ..      72     112 ..      71     159 .. 0.87
   2 ?   -1.4   0.0       2.3     3e+03      60      75 ..     369     387 ..     360     402 .. 0.69
   3 ?   -1.4   0.1       2.3     3e+03      74     119 ..     610     658 ..     560     671 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0003
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsell.skyvge 41 
                 ll G  G GKT+++  v+ e+g++ + +   + l  ++ ge
  EGE27086.1  72 LLLGVTGSGKTYTMAKVIAECGRPAIIMAHNKTLaAQLYGE 112
                 899*******************9988887777664555554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.3
                 EEEEEETGGGHHHHH...T CS
         AAA  60 silfiDEidalaksr...s 75 
                   lfiDE +  +++     
  EGE27086.1 369 ALLFIDESHVTVPQIgamY 387
                 589****999988874442 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.3
                 H...TTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHH CS
         AAA  74 r...sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpal 119
                 +   ++++    +++  ++  ++d  ++++s+v+ i+ ++    +d+ +
  EGE27086.1 610 QiafNQEHGITPKSASRAITDKIDTGDDETSEVVQIVLSQALAGVDENI 658
                 2332222333333345555555555555566666666666666555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0073       9.3      13      35 ..      71      93 ..      59     108 .. 0.82
   2 ?    5.3   0.0     0.018        23      38      78 ..     478     558 ..     464     691 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0073
      AAA_19 13 llvtaGpGtGKTrvlkhivallv 35
                 l+++  G+GKT+++ +++a++ 
  EGE27086.1 71 QLLLGVTGSGKTYTMAKVIAECG 93
                68999************999876 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.018
      AAA_19  38 ggvkpeeillvaftgrAakelrerlaalgae.......atTiHrlal..................................l 78 
                 ++++ e++l+ ++t+r a+ l+  l+++g +       ++T+ r+ +                                   
  EGE27086.1 478 KSLD-ERVLITTLTKRMAEDLTSYLKEYGIKvaylhsdIDTVERMKIihelrtgifdvlvginllregldmpevslvaifdA 558
                 3333.89****************99999998667777744444432233444455555555555555555555555554440 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.7e-05      0.12      88     102 ..      73      87 ..       9     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.7e-05
                  EEES........... CS
  Microtub_bd  88 aygqTGsGKtyTmeg 102
                   +g TGsGKtyTm +
   EGE27086.1  73 LLGVTGSGKTYTMAK 87 
                  5799*********98 PP

>> Collagen_bind_2  Putative collagen-binding domain of a collagenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00015      0.19      29      63 ..     238     272 ..     229     293 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
  Collagen_bind_2  29 vYlptgrpitvdlsklsgkkvkasWfdPrtGeltk 63 
                      +Y  +++++ v+++ ++++  k++WfdP tG+  k
       EGE27086.1 238 IYPAESESLAVRIQMFDDEIEKITWFDPLTGKNIK 272
                      8999***************************9765 PP

>> Corona_RPol_N  Coronavirus RPol N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00028      0.35     172     228 ..      81     135 ..      76     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00028
  Corona_RPol_N 172 kavkfadalvekGlvGvltldnqdlnGkfydfGdfvktapGaGvavvdsyysylmpi 228
                    k+ ++a+ ++e G   ++   n+ l  ++y  G+f    p + v ++ syy y  p 
     EGE27086.1  81 KTYTMAKVIAECGRPAIIMAHNKTLAAQLY--GEFKAFFPNNAVEYFVSYYDYYQPE 135
                    5778999**********************8..9********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 5107.53
//
Query:       EGE27087.1  [L=200]
Description: G:T/U mismatch-specific DNA glycosylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1523.49
//
Query:       EGE27088.1  [L=1315]
Description: exodeoxyribonuclease V beta subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-48  164.5   0.0    3.5e-47  161.5   0.0    2.3  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    1.1e-28  100.6   0.0      8e-28   97.8   0.0    2.4  1  UvrD_C           UvrD-like helicase C-terminal domain
    2.2e-19   70.2   0.5    2.6e-17   63.5   0.2    3.5  2  AAA_19           AAA domain
    2.5e-11   43.2   0.0    7.4e-05   22.5   0.0    2.6  2  UvrD_C_2         UvrD-like helicase C-terminal domain
    9.2e-06   25.8   0.2    3.4e-05   23.9   0.2    2.0  1  PDDEXK_1         PD-(D/E)XK nuclease superfamily
    1.1e-05   25.3   0.1    8.2e-05   22.4   0.0    2.4  2  AAA_30           AAA domain
    0.00077   19.1   0.0     0.0018   17.9   0.0    1.6  1  AAA_12           AAA domain
     0.0058   16.6   0.0      0.025   14.6   0.0    2.1  1  ResIII           Type III restriction enzyme, res subunit
     0.0088   15.8   0.0        4.2    7.0   0.0    3.5  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
  ------ inclusion threshold ------
      0.027   14.3   0.1       0.11   12.3   0.0    2.0  2  AAA_11           AAA domain
      0.082   13.0   0.1       0.23   11.5   0.1    1.7  1  DUF1266          Protein of unknown function (DUF1266)
        0.1   12.9   0.3         23    5.3   0.0    2.9  2  AAA_22           AAA domain
       0.11   12.9   0.3          1    9.8   0.0    2.8  3  Toprim_2         Toprim-like
       0.18   11.5   0.6       0.39   10.4   0.6    1.5  1  DUF3799          PDDEXK-like domain of unknown function (DUF3


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.0   2.7e-50   3.5e-47       4     310 ..      17     513 ..      15     516 .. 0.86
   2 ?   -3.4   0.0       4.1   5.3e+03     116     139 ..     717     744 ..     656     821 .. 0.64

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 2.7e-50
                    HHHHHHHS.-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH............................... CS
  UvrD-helicase   4 eqreaias.lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee............................... 67 
                    eq +a+++ l++  l+eAsAG+GKT +l+  ilrl+ e+++ p+ri++ TFT++Aa+E++eRi e                               
     EGE27088.1  17 EQIAALQCtLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATTFTRAAAAEMQERISErlhsfyglmrwlqgmlstqpewfnqtapieq 112
                    6777888889************************************************************************************** PP

                    .....................HHHHCCHHCTT-H...HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHH CS
  UvrD-helicase  68 .....................alkkaeqessdde...rlrlalqnlseanisTlHsfcqkilkkeanrigldpnfrildeedeedlkqqellkell 139
                                         ++  ++q +  +e   r  l l++l+++ ++Tl+s++qk l++ a +ig +++++il++ ++   k    +++++
     EGE27088.1 113 iityadqagydaadpinehllRFILSQQATFLNEvvyRTGLLLTSLDKLFVGTLDSLAQKWLNEFAAQIGHQSGMEILNNAEQ---K----VAAIV 201
                    **********9999888887744444445555558889999**************************************9993...3....33334 PP

                    SCHSHTTTTHHHHHHHHHHHHHHCCCCCH................................................................... CS
  UvrD-helicase 140 eksaddslnldkkkleklikelsksrnik................................................................... 168
                    +++ +  +++  k+++++ ++++k  + +                                                                   
     EGE27088.1 202 HDEMR-AEEVRLKHAQPEFYQIFKAFYPNffsqvdavvkivnkainfysapidelmpintdislvkamidqiittdftgftpyfdanfrkqvamnq 296
                    32223.3688888999999999999888889999999999999999999999999999999*********************************** PP

                    .....................................................HHHCCCHHHHHCHHHHHHHHHHHTTCCTTHHCHSSTSCSHHHH CS
  UvrD-helicase 169 .....................................................keelslskskaeelrelvskakekqlspkelkkafekasdlqk 211
                                                                         + + s  ++ +    +++s++ +  l+  e+++  +++   ++
     EGE27088.1 297 slgfgkliqylpnllsliqkhgvlfvrfvdndalklidaiikamdkdwqifnkSANPSDINQFLALPLQALSDIANVYLTLSEQTN-LYHTHICRH 391
                    **************************988877777777777777777774442222222222223334556777777777777666.457777777 PP

                    HHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTT...................... CS
  UvrD-helicase 212 kiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasghee...................... 285
                     i  +  ++ ++++ +    f   +++l e+l++ + la+++r +y+++liDE QD n  Q ++++l++ ++                        
     EGE27088.1 392 IILSAKSQIAQRLETHGQTTFTLQMVRLNEALRNSPALARQIRHHYPVALIDESQDINGLQVELIELVYLNEIAnyhknliryeqiggekpklprg 487
                    777777788888888888999999999999*************************************998876678888***************** PP

                    .EEEEE-GGG--GGGGTB-THHHHHH CS
  UvrD-helicase 286 .lfmvGDpkQsIYgFRgAdielflkk 310
                     l++vGDpkQ+IY+FRg+d+++++  
     EGE27088.1 488 fLLLVGDPKQAIYRFRGGDVTNYNLI 513
                    ***********************865 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.1
                    TTTEEECHHHHH....HCCHHHHHHHHH CS
  UvrD-helicase 116 pnfrildeedee....dlkqqellkell 139
                    + ++i++ +d++    dl  ++ lk+ l
     EGE27088.1 717 QAINIIEPNDQQaldnDLSETQNLKTHL 744
                    3333333333221111111222222222 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   6.3e-31     8e-28       2     344 ..     533     928 ..     532     931 .. 0.76

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 6.3e-31
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxx....................xxxxxxx..........xxxxxxxxxxx......xxxxxxxxxx RF
      UvrD_C   2 vLekNyRStksLlkaankflenilnr.rale.kek....................ktvekge..........kivvleaetee......eEaekiaati 62 
                 +L+ N RS+k L++a+n++++n+ ++  a++                        +                +i vl +++ e      + ae+ia+ i
  EGE27088.1 533 SLTVNRRSSKALIEALNAWFDNNHQDaVANHaN-LgqgifyqqiqahkdgggihwQ-----SdayadyygkyPIAVLHFDHIEagqkaaQRAEQIARHI 625
                 699*****************9999995555552.1468999999777777755552.....03555577779777777655442211126677888888 PP

                 xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  63 kall.......ekneklediavLvRsnkdadkiskaLkkegipfnvvdeekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatverisee 154
                 +++l       ++++  +diavL R+    d i+ +L +++ip ++ +e+++F ++   d+la++  ++ ++ +  l + l +  +g++ +++ +i   
  EGE27088.1 626 NTILqgdhtlhGQKILPKDIAVLGRTADTLDRIKSELDQLNIPAIIPKEMNIFITQAADDLLALIGAILQPNHSENLGKFLVSSLVGMTLKQAINI--- 721
                 8887999999999999***************************************************************99999999888777777... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 155 lkklglsltDfikedtleygeeFieliraleeknlelllkkiektaeerqalvskyadlfkelaeklae...lkekseskrkkeeklenlreLysllke 250
                            i+ ++++  ++ ++ +++l+ + l +l k  ek ++   +   +ya   +++  +  +   lk++++ +r     l  l++L++l+ e
  EGE27088.1 722 -----------IEPNDQQALDNDLSETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDYDDDKspwLKAATQGER----YLVDLERLVALVSE 805
                 ...........6666666666666666666666665443436666555566666666666666543222111334444444....89999999999999 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxx RF
      UvrD_C 251 lekkeeeeeveeklneileiatLseseleeskkkekipiiTiHqAKGlEFdvVflagleegtfP................................syr 317
                  ++ +e   +    ++++ +   +++ +  + +++ ++++TiH++KGlEF++V+++g++e+  P                                 y 
  EGE27088.1 806 QSQLHEMRIIAWYHKQMNADVDSHNKRP-ILPSESGVNLMTIHKSKGLEFPIVYVIGMDEK--PknengltiypytnhnfqrrlslsqgnlidenyYYH 901
                 9997777777777888888884444444.3344499*********************7765..766888888889999999999998888888876555 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 318 skkekrleEEkRlfYVaiTRAkkrLfi 344
                  ++++ ++E +Rl YVa+TRA ++L+i
  EGE27088.1 902 INQQELIDEIRRLGYVALTRASEQLYI 928
                 5557789*******************9 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.2     2e-20   2.6e-17       4     146 .]      21     503 ..      18     503 .. 0.92
   2 ?   -0.4   0.0         1   1.3e+03      83      83 ..     608     608 ..     513     814 .. 0.59

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 2e-20
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal......................... 77 
                 a++ + e+  l+ a +GtGKT +l++i+  l+ +++ +pe+i++ +ft+ Aa e++er+    ++ + + +l +                         
  EGE27088.1  21 ALQCTLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATTFTRAAAAEMQERI---SERLHSFYGL-Mrwlqgmlstqpewfnqtapieqiit 115
                 55555678899************************************************...6666666666.45777777777777777777777777 PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  EGE27088.1 116 yadqagydaadpinehllrfilsqqatflnevvyrtgllltsldklfvgtldslaqkwlnefaaqighqsgmeilnnaeqkvaaivhdemraeevrlkh 214
                 88888899999999999999999999999999999999999999999999999999******************************************* PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  EGE27088.1 215 aqpefyqifkafypnffsqvdavvkivnkainfysapidelmpintdislvkamidqiittdftgftpyfdanfrkqvamnqslgfgkliqylpnllsl 313
                 *************************************************************************************************** PP

      AAA_19  78 ..........................................................................................ldfddllte 86 
                                                                                                           l++++++t 
  EGE27088.1 314 iqkhgvlfvrfvdndalklidaiikamdkdwqifnksanpsdinqflalplqalsdianvyltlseqtnlyhthicrhiilsaksqiaqrLETHGQTTF 412
                 ******************************************************************************************666666666 PP

      AAA_19  87 alelle.......eaeeekklqeee.llivDEfqdvdelqyrLlkallgek.kk......................lllvGDpdQliyvfr 146
                 +l++++       + +  +++++++ + ++DE+qd++ lq++L++ ++ ++ ++                      lllvGDp+Q+iy fr
  EGE27088.1 413 TLQMVRlnealrnSPALARQIRHHYpVALIDESQDINGLQVELIELVYLNEiANyhknliryeqiggekpklprgfLLLVGDPKQAIYRFR 503
                 66666666766675566789999999********************99888655899********************************97 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1
      AAA_19  83 l 83 
                 +
  EGE27088.1 608 I 608
                 1 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   5.8e-08   7.4e-05       4      26 ..     843     865 ..     841     879 .. 0.87
   2 !   17.7   0.0   1.8e-06    0.0023      33      52 .]     910     929 ..     900     929 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.8e-08
    UvrD_C_2   4 altihkaQGsefpaVivfdpdla 26 
                  +tihk++G+efp+V+v+ +d+ 
  EGE27088.1 843 LMTIHKSKGLEFPIVYVIGMDEK 865
                 59***************999865 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.8e-06
    UvrD_C_2  33 lrrrlLYtavTRAreklilv 52 
                 + rrl Y+a+TRA+e+l++v
  EGE27088.1 910 EIRRLGYVALTRASEQLYIV 929
                 469***************98 PP

>> PDDEXK_1  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.2   2.7e-08   3.4e-05     121     184 ..    1161    1267 ..    1054    1296 .. 0.56

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.7e-08
    PDDEXK_1  121 lefg................................g.ekvrLkGriDrvddkegelriiDyKtgsappkskelaelkegl............Qlll 172 
                  l+f+                                  +   L+G iD+v + ++++ i+DyK++     +++  e  ++             Q ++
  EGE27088.1 1161 LSFTlglgdtfsitrlnevfkahsdkdlvlldddyhTmRYRYLRGEIDLVYECDRRFFIVDYKSNY-LGSTPD--EYHDHAmaavmdkvgywlQAAI 1254
                  444455556666666666666777777777777655324446*********************866.333443..333333444455556666**** PP

    PDDEXK_1  173 Yllalaeg.eelk 184 
                  Y++al++  + ++
  EGE27088.1 1255 YQVALHRLlKIRL 1267
                  ******9944433 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   6.4e-08   8.2e-05       5      81 ..      17      94 ..      15     117 .. 0.76
   2 ?   -1.3   0.0       1.2   1.5e+03      39      97 ..     381     445 ..     375     455 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.4e-08
      AAA_30  5 eQaaavealltsgdrvavltGpAGtGKttalkal..reaweaa.g.grviglAptgkaAkvLaeelgieastiakllkrlk 81
                eQ aa++ +l++     ++++ AGtGKt +l+++  r ++e++   +r+i+ + t +aA++++e +  + ++   l+++l+
  EGE27088.1 17 EQIAALQCTLEQA---YLIEASAGTGKTWTLTGIilRLLIEKKyPpERIIATTFTRAAAAEMQERISERLHSFYGLMRWLQ 94
                7888887666555...7***************998677777775269****************998765555555555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
      AAA_30  39 reaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk........grarlepg.tllivDEa 97 
                 +++++++  r i+l+ +++ A++L+++ g ++ t++ +  + +        +  +++++  + ++DE+
  EGE27088.1 381 TNLYHTHICRHIILSAKSQIAQRLETH-GQTTFTLQMVRLN-EalrnspalA-RQIRHHyPVALIDES 445
                 556666655667788888899999955.6666666544422.2355677753.567777788888886 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.4e-06    0.0018     101     196 ..     798     930 ..     726     932 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.4e-06
      AAA_12 101 kllkkgsee.erkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsnekk............................ 170
                 +l++ +se+ + ++  +i+ Y++q++   +  +++    se+ ++  t+ +  G e  ++ +     ++k+                            
  EGE27088.1 798 RLVALVSEQsQLHEMRIIAWYHKQMNADVDSHNKRPILPSESGVNLMTIHKSKGLEFPIVYVIGMDEKPKNengltiypytnhnfqrrlslsqgnlide 896
                 344444444455999**********997777776666666666***************99988888876667789999999999*************** PP

      AAA_12 171 .......eigflkderrlN.ValTRAkskliivG 196
                        +  ++++ rrl  ValTRA ++l+ivG
  EGE27088.1 897 nyyyhinQQELIDEIRRLGyVALTRASEQLYIVG 930
                 ****998788********66*************9 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     2e-05     0.025      22      53 ..      25      56 ..      15      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
                .TTSEEEEEESTTSTHHHHHHHHHHHH-S... CS
      ResIII 22 krdkrglikmaTGtGKTlvaaklierllkkgk 53
                + ++ +li++  GtGKT++++ +i rll ++k
  EGE27088.1 25 TLEQAYLIEASAGTGKTWTLTGIILRLLIEKK 56
                457899*******************9986654 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.11   1.4e+02      90     118 ..     488     516 ..     483     554 .. 0.85
   2 ?    1.9   0.0      0.12   1.6e+02     169     204 ..     818     862 ..     794     873 .. 0.80
   3 !    7.0   0.0    0.0033       4.2     208     233 ..     904     929 ..     886     930 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.11
  Viral_helicase1  90 lvilfGDplQipfhsrnasfllahlpssl 118
                      +++l+GDp+Q  +  r +++ + +l++++
       EGE27088.1 488 FLLLVGDPKQAIYRFRGGDVTNYNLIKHY 516
                      789***********999999999998887 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
  Viral_helicase1 169 yltftqalkealgvr.........evttvhevqGltfdkVtlvll 204
                      y ++ +a++ +++ r         + +t h   Gl+f+ V ++  
       EGE27088.1 818 YHKQMNADVDSHNKRpilpsesgvNLMTIHKSKGLEFPIVYVIGM 862
                      6677778888888888888899999***************98755 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0033
  Viral_helicase1 208 dlelisesrenllvAlTRhrkslvil 233
                      ++eli e r   +vAlTR+ ++l+i+
       EGE27088.1 904 QQELIDEIRRLGYVALTRASEQLYIV 929
                      34466667999************997 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.5e-05      0.11       5      77 ..      17      82 ..      15      90 .. 0.86
   2 ?   -2.1   0.1       2.1   2.7e+03     246     253 ..     490     497 ..     489     497 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.5e-05
      AAA_11  5 sqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrg 77
                +q  a++ +l++    li+   GtgKT t+++++ +l       e+k +++ri +++ + aA  e+ er++++
  EGE27088.1 17 EQIAALQCTLEQA--YLIEASAGTGKTWTLTGIILRL-----LIEKKYPPERIIATTFTRAAAAEMQERISER 82
                5777777777777..59********************.....567899******************9999984 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.1
      AAA_11 246 vLvGDpkQ 253
                 +LvGDpkQ
  EGE27088.1 490 LLVGDPKQ 497
                 7******9 PP

>> DUF1266  Protein of unknown function (DUF1266)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00018      0.23     108     164 ..     736     794 ..     732     800 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
     DUF1266 108 eaeelldkagraaqssyssWeefaasyllGrlywfdeeeeksae..sykeyieavreLl 164
                 e + l  ++ + +++sy+ W+ f+ s +l ++++++  + ++++  + k  +++ r+L+
  EGE27088.1 736 ETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDYDDDKspWLKAATQGERYLV 794
                 667777889999**************************999888999999999999886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.018        23       7      37 ..      29      59 ..      25     105 .. 0.74
   2 ?    4.3   0.2     0.036        46      70     111 ..     402     458 ..     357     478 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.018
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaee 37
                  ++ + +GtGKT++l  +  +l +e+k   
  EGE27088.1 29 AYLIEASAGTGKTWTLTGIILRLLIEKKYPP 59
                6788899*********999999976655443 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.036
      AAA_22  70 a...............erlsseellealeqalraravielliiDEaqhlr..seealee 111
                                 + ++  +   al++++r+++   + +iDE q ++  + e++e 
  EGE27088.1 402 QrlethgqttftlqmvRLNEALRNSPALARQIRHHYP--VALIDESQDINglQVELIEL 458
                 1555544444444442222333333677788888877..**********7654444333 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.5   7.1e+03      53      68 ..     117     132 ..      99     140 .. 0.84
   2 ?    9.8   0.0   0.00079         1      36      72 ..     592     626 ..     579     641 .. 0.79
   3 ?   -2.9   0.0       7.5   9.6e+03      19      54 ..     698     733 ..     682     747 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.5
    Toprim_2  53 nDkaGrkaakrlaell 68 
                 +D+aG +aa+ ++e+l
  EGE27088.1 117 ADQAGYDAADPINEHL 132
                 699******9999987 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00079
    Toprim_2  36 lkllerypekkvvlalDnDkaGrkaakrlaellreag 72 
                 ++++ +y     vl++D+ +aG+kaa+r+ +++r+ +
  EGE27088.1 592 ADYYGKY--PIAVLHFDHIEAGQKAAQRAEQIARHIN 626
                 4555566..3459******************998665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 7.5
    Toprim_2  19 e.....ktnvvalgGtalteaalkllerypekkvvlalDnD 54 
                 +     k  v +l G    ++a++++e ++++    alDnD
  EGE27088.1 698 HsenlgKFLVSSLVGM-TLKQAINIIEPNDQQ----ALDND 733
                 1445656667777788.667778888877444....77777 PP

>> DUF3799  PDDEXK-like domain of unknown function (DUF3799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6    0.0003      0.39     111     167 ..    1204    1261 ..    1200    1271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0003
                  EEEEEEEET...TTEEEEEEEES.-SS--EEETTTE.EE-HHHHTTHHHHHHHHHHHHHH CS
     DUF3799  111 kikiDllnp..ekkyivDlKttk.diskkkfnedaakrvsFieaygYdlQaavYqellrq 167 
                  ++ iDl+ +   + +ivD+K+     ++++++++a +    +++ gY lQaa+Yq  l +
  EGE27088.1 1204 RGEIDLVYEcdRRFFIVDYKSNYlGSTPDEYHDHAMA--AVMDKVGYWLQAAIYQVALHR 1261
                  78899988764556789****9877888999988876..89**************87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.48
# Mc/sec: 8173.15
//
Query:       EGE27089.1  [L=685]
Description: exodeoxyribonuclease V, alpha subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-36  124.4   0.2    7.6e-36  123.6   0.2    1.3  1  AAA_30           AAA domain
    5.6e-26   91.6   0.1    1.6e-25   90.1   0.1    1.8  1  AAA_19           AAA domain
    1.8e-14   54.2   1.5    1.3e-08   34.9   0.1    2.3  2  AAA_11           AAA domain
      1e-13   50.9   0.1    1.9e-13   50.0   0.1    1.5  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    1.1e-10   41.6   2.3      2e-06   27.7   0.1    3.5  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    6.7e-09   35.8   0.0    1.6e-08   34.6   0.0    1.6  1  Helicase_RecD    Helicase
    2.2e-08   34.0   2.2    1.2e-07   31.5   2.4    2.0  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
      6e-08   32.3   0.0    1.4e-07   31.1   0.0    1.5  1  DUF2075          Uncharacterized conserved protein (DUF2075)
    7.1e-07   29.6   0.0    2.3e-06   27.9   0.0    1.9  1  AAA_22           AAA domain
    2.3e-06   27.3   0.0    6.8e-06   25.8   0.0    1.8  1  SH3_13           ATP-dependent RecD-like DNA helicase SH3 dom
      5e-06   26.1   0.2     0.0057   16.1   0.1    2.5  2  PhoH             PhoH-like protein
    7.4e-06   24.2   0.3    3.3e-05   22.1   0.1    2.0  2  Herpes_Helicase  Helicase
    0.00049   20.5   1.1     0.0012   19.2   0.3    2.0  2  AAA_16           AAA ATPase domain
     0.0047   16.1   0.1      0.031   13.5   0.0    2.3  2  PIF1             PIF1-like helicase
     0.0058   16.2   0.0      0.012   15.1   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.022   13.8   0.0    1.4  1  T2SSE            Type II/IV secretion system protein
       0.02   14.6   0.2       0.15   11.8   0.2    2.3  1  DEAD             DEAD/DEAH box helicase
      0.021   14.4   0.0      0.096   12.2   0.0    2.0  2  AAA_25           AAA domain
      0.022   14.7   0.0      0.042   13.8   0.0    1.6  1  NACHT            NACHT domain
      0.036   13.8   0.1       0.19   11.4   0.0    2.1  2  Sigma54_activat  Sigma-54 interaction domain
      0.048   13.0   0.1       0.12   11.7   0.1    1.6  1  ATPase           KaiC
      0.063   12.7   1.8       0.19   11.1   1.4    2.2  1  UvrD_C           UvrD-like helicase C-terminal domain
       0.07   13.5   0.6       0.46   10.9   0.6    2.6  1  AAA              ATPase family associated with various cellul
       0.47   10.4   4.2       0.25   11.3   0.1    2.6  3  ResIII           Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   0.2     1e-38   7.6e-36       2     181 ..     247     445 ..     246     456 .. 0.82

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 1e-38
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag....grviglAptgkaAkvLaeelgi...........eastiakllkrlk.... 81 
                 ln+eQ++a++ + ++ + ++++tG++GtGKt+++++++ a++++     +r+ ++AptgkaA++++e+l             + +ti++ll   +    
  EGE27089.1 247 LNTEQRDAIKLV-SK-QAFCLITGGPGTGKTFTVAQIVIALNQRDehkkMRLGLAAPTGKAAQRMSESLLKsldkandiqlpKPKTIHRLLGIGAngsp 343
                 89*******744.44.45*******************9999988558779999*************844422222333455899*******776699*9 PP

      AAA_30  82 ..grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlveaa..gigtaeLtevvRqke.seeraaalalregdae 175
                   ++++  p ++li+DEa+m++t+ + +l++a+++ g +vil+GD++Qla+V+aG+vl+dl++ +  ++  ++Lt   R+++ s   ++a+ +++++++
  EGE27089.1 344 ryDAKNQLPLDMLIIDEASMLGTELASQLFAAIAT-GCRVILLGDTHQLAAVDAGAVLADLCRIErlRHLRVNLTASKRFTDtSGVGQLAKLINDDRQN 441
                 9854555566***********************99.**************************98744667899*******998999******9999887 PP

      AAA_30 176 ealeal 181
                   +++ 
  EGE27089.1 442 --IHFD 445
                 ..3333 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.1   2.2e-28   1.6e-25       1     143 [.     251     393 ..     251     396 .. 0.89

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 2.2e-28
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae........atTiHrlalldfddlltealel 90 
                 qr+a++  +k+  +l+t+GpGtGKT ++ +iv  l+++ + k  ++ l+a+tg+Aa++++e+l + + +         +TiHrl  l++    +     
  EGE27089.1 251 QRDAIKlVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAPTGKAAQRMSESLLKSLDKandiqlpkPKTIHRL--LGIGANGSP---- 343
                 899**99999***************************************************99554444799************..877777622.... PP

      AAA_19  91 leeaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQliy 143
                   + + +++l   ++li+DE++++  el+ +L+ a++ ++ +++l+GD +Ql  
  EGE27089.1 344 --RYDAKNQL-PLDMLIIDEASMLGtELASQLFAAIA-TGCRVILLGDTHQLAA 393
                 ..23566777.678***********************.9999*********975 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.1   1.8e-11   1.3e-08       2      89 ..     247     329 ..     246     350 .. 0.83
   2 !   18.4   0.2   1.9e-06    0.0014     217     257 ..     352     394 ..     339     395 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.8e-11
      AAA_11   2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldse.gekykpk 89 
                 ln +qr+aik + ++  ++li G PGtgKT+t+++++ +l     +++++++k r+ ++ap+ +A   + e ll++l +++  +  kpk
  EGE27089.1 247 LNTEQRDAIKLVSKQA-FCLITGGPGTGKTFTVAQIVIAL-----NQRDEHKKMRLGLAAPTGKAAQRMSESLLKSLDKANdIQLPKPK 329
                 8********9766665.7**********************.....567899*********************99933332225555555 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.9e-06
      AAA_11 217 kfdvviIDEAaq.avEp..stliPlrlgakkvvLvGDpkQLpat 257
                   d++iIDEA++  +E+  + + ++  g  +v+L+GD  QL a+
  EGE27089.1 352 PLDMLIIDEASMlGTELasQLFAAIATG-CRVILLGDTHQLAAV 394
                 78********995466511567788888.8***********996 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.1   2.6e-16   1.9e-13       2      51 ..     609     655 ..     608     656 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2.6e-16
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAreklil 51 
                 aya+t+hk+QGse++ V ++ +  +++    l+++l+YtavTRA+  +++
  EGE27089.1 609 AYAITVHKSQGSEWQKVAIIFDGNSER---LLSKELIYTAVTRAKSAVHI 655
                 8******************55555554...479************99987 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.082        61       2      21 ..     265     284 ..     264     323 .. 0.70
   2 !    8.3   0.1    0.0023       1.7      64     103 ..     354     394 ..     345     424 .. 0.77
   3 !   27.7   0.1   2.7e-09     2e-06     185     233 ..     611     656 ..     591     657 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.082
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                      ++ G pG GK+  + +++  
       EGE27089.1 265 LITGGPGTGKTFTVAQIVIA 284
                      799********999988866 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0023
  Viral_helicase1  64 kililDEylllhaGyill.laalskaklvilfGDplQipfh 103
                      + li+DE+ +l + +     aa+++   vil+GD+ Q    
       EGE27089.1 354 DMLIIDEASMLGTELASQlFAAIATGCRVILLGDTHQLAAV 394
                      689*******986554445555555558*********8665 PP

  == domain 3  score: 27.7 bits;  conditional E-value: 2.7e-09
  Viral_helicase1 185 vttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrkslvil 233
                      + tvh  qG++++kV ++ + +++++ +  s+e  ++A TR++++++i+
       EGE27089.1 611 AITVHKSQGSEWQKVAIIFDGNSERL-L--SKELIYTAVTRAKSAVHIY 656
                      69******************887644.5..68****************8 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.2e-11   1.6e-08       2     113 ..     266     375 ..     265     389 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.2e-11
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegk...snilvtapskenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyiapdellklkeqadll 94 
                    +t+++G+GK+ +++ ++ al ++++   +++ ++ap+ ++++++ e+l k+l++ +  + +k k+ ++      + + +y a ++l       d+l
     EGE27089.1 266 ITGGPGTGKTFTVAQIVIALNQRDEhkkMRLGLAAPTGKAAQRMSESLLKSLDKANDIQLPKPKTIHRLLGIGANGSPRYDAKNQLPL-----DML 356
                    99************9999999887777799********************99998766656555555444444477777777777666.....99* PP

  Helicase_RecD  95 vvDEAAaiplpllkkllek 113
                    ++DEA+++ ++l ++l+ +
     EGE27089.1 357 IIDEASMLGTELASQLFAA 375
                    ************9999744 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   2.4   1.7e-10   1.2e-07       1      78 [.     247     326 ..     247     545 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.7e-10
                    SSHHHHHHHHS..-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT CS
  UvrD-helicase   1 lnpeqreaias..lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessd 78 
                    ln+eqr+ai+    +  +l+  ++G+GKTf++a+ ++ l +  e +  r+ +   T kAa+ + e + + l ka+  ++ 
     EGE27089.1 247 LNTEQRDAIKLvsKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAPTGKAAQRMSESLLKSLDKANDIQLP 326
                    799*******963444589************************9*************************99998755543 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   1.9e-10   1.4e-07       2     102 ..     262     366 ..     261     460 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.9e-10
     DUF2075   2 avvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke...ekkkkkeafeklssfinnlsef....kkaeekkeepkedvvi 93 
                 a +l+tG++GtGKt    +++ +l  +++++++++ ++  +   +  ++++++     +k  + ++ k++++   l       + +++ k++ ++d++i
  EGE27089.1 262 AFCLITGGPGTGKTFTVAQIVIAL--NQRDEHKKMRLGLAAPTGKAAQRMSESLlksLDKANDIQLPKPKTIHRLLG-IgangSPRYDAKNQLPLDMLI 357
                 679*********************..999999999999999999999999999974445555556666666555555.45988889999999******* PP

     DUF2075  94 vDEAhrllt 102
                 +DEA  l t
  EGE27089.1 358 IDEASMLGT 366
                 ****98877 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   3.1e-09   2.3e-06       4     131 ..     260     388 ..     255     394 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 3.1e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelkaerlsseellealeqalrarav.....ielli 96 
                 ++ ++++tG +GtGKT+++++++  l+++ +++++r +++  t ++    s++ll+ l +a + +l + +++ ++ll   ++ + ++++       +li
  EGE27089.1 260 KQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKMRLGLAAPTGKAAQrMSESLLKSLDKANDIQLPK-PKTIHRLLGIGANGSPRYDAknqlpLDMLI 357
                 7899**********************999998888877774444444445777777777777777777.99*****************9********** PP

      AAA_22  97 iDEaqhlrseealeeLrsllnlsrkgvqliLvGtp 131
                 iDEa  l   e+ ++L   +    +g+++iL G +
  EGE27089.1 358 IDEASML-GTELASQL---FAAIATGCRVILLGDT 388
                 *******.88888888...2225789999999977 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   9.1e-09   6.8e-06      26      51 ..     552     577 ..     530     581 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 9.1e-09
      SH3_13  26 frvgDkVmqlkNnydkgvfNGDiGii 51 
                 +  g+ Vm +kN yd+g+fNGDiGi+
  EGE27089.1 552 WFHGRVVMITKNLYDLGLFNGDIGIC 577
                 778999******************97 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   7.6e-06    0.0057       5      52 ..     247     294 ..     245     312 .. 0.83
   2 !    7.2   0.0    0.0041       3.1     122     159 ..     355     392 ..     351     412 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.6e-06
                 -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEE CS
        PhoH   5 ktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkri 52 
                  ++eQ+++++ ++k+ ++ ++G  GtGKt+   ++ +++ ++++ k++
  EGE27089.1 247 LNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKKM 294
                 6899**************************988777777776666654 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0041
                 EEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE------ CS
        PhoH 122 fvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqid 159
                 ++i+DEA  + +e    +   +  +++v+++Gd++q  
  EGE27089.1 355 MLIIDEASMLGTELASQLFAAIATGCRVILLGDTHQLA 392
                 689*******************************9975 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.43   3.2e+02      62      84 ..     264     286 ..     227     320 .. 0.80
   2 !   22.1   0.1   4.4e-08   3.3e-05     720     778 ..     598     658 ..     585     672 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.43
  Herpes_Helicase  62 ylitGtAGaGkstsiqalaenld 84 
                       litG  G+Gk+ +++ +  +l+
       EGE27089.1 264 CLITGGPGTGKTFTVAQIVIALN 286
                      589*********99988776665 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 4.4e-08
  Herpes_Helicase 720 lcttvDYgissklamtiaksqGlslekvAicF.gnh.knlklssvYvalsRatdseflvmd 778
                      + +  D  +s   a+t+ ksqG   +kvAi F gn+ + l ++ +Y a+ Ra ++ ++   
       EGE27089.1 598 VDMLSDTVVSTAYAITVHKSQGSEWQKVAIIFdGNSeRLLSKELIYTAVTRAKSAVHIYST 658
                      44567899999*********************544469999*************9998755 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.5   3.3e+03      89     144 ..      95     148 ..      47     173 .. 0.69
   2 !   19.2   0.3   1.6e-06    0.0012      25     167 ..     262     412 ..     249     415 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.5
      AAA_16  89 aesaeleawrekleealaavpelagaeasrllellkrllallsrderplvlvlDdl 144
                 a ++e  +w++++++  + +++++ ++++ ++++l+++ ++ s  ++ +v+ +++l
  EGE27089.1  95 ALANEGMDWAAFFDAYHR-CADDTIKIKQFVNHALNHFRQQVSLLDH-TVMEIEQL 148
                 344455556666655555.6667777778888888888877777777.77777766 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.6e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala...............av 108
                   +l++G +G+GK+  v ++  al+++     + k  +l+ a+p    aq    e+ll+ l+ +  ++ + + ++++++ l+               + 
  EGE27089.1 262 AFCLITGGPGTGKTFTVAQIVIALNQR----DEHKKMRLGLAAPTGKAAQRM-SESLLKSLDKA--NDIQLPKPKTIHRLLGigangsprydaknqlPL 353
                 579******************999999....788888888889998899999.66*****9988..445777788899999998998888885555555 PP

      AAA_16 109 pelagaeasrllellkrll.allsrderplvlvlDdlqwadeaslqllaaLlrlleskpl 167
                 + l  +eas l  +l++ l a ++++ r ++l+ D  q a  +  ++la L+r    ++l
  EGE27089.1 354 DMLIIDEASMLGTELASQLfAAIATGCR-VILLGDTHQLAAVDAGAVLADLCRIERLRHL 412
                 5555555577777777766688899666.7777777777777777779999999777666 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.1e-05     0.031       2     118 ..     247     368 ..     246     398 .. 0.66
   2 ?   -1.1   0.0       1.1   8.2e+02     337     357 ..     554     573 ..     541     577 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.1e-05
                 --HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC....TCCCEEEEESSHHHHHCC.TSEEC....HHHHT-TTSSS-HHHHHHHT CS
        PIF1   2 LneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs....egkivlavAssGvAalllegGrta....hsrfkiplekdeestckikr 92 
                 Ln+eQ+ +++ +      +k  +  +tG  GtgKtf   +++ +l++    +++     A +G Aa  + +        +   ++p  k+ +  + i  
  EGE27089.1 247 LNTEQRDAIKLV------SKQAFCLITGGPGTGKTFTVAQIVIALNQrdehKKMRLGLAAPTGKAAQRMSESLLKsldkANDIQLPKPKTIHRLLGIGA 339
                 899*******99......8889999*****************999984432222334567899999988654332110023334444444445554433 PP

                 S...CCCHHHHHC-SEEEEECGGGSBHHH CS
        PIF1  93 g...sklaellkktsliiwDEapmverec 118
                 +   +  a+     +++i+DEa+m+  e+
  EGE27089.1 340 NgspRYDAKNQLPLDMLIIDEASMLGTEL 368
                 31112334455557888999999987655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
                 TT-EEEE-S--CTT-SC-TCE CS
        PIF1 337 vGvpvmllrNldqsaGLcNGt 357
                  G +vm+ +Nl    GL NG 
  EGE27089.1 554 HGRVVMITKNLYD-LGLFNGD 573
                 5899*******75.5****96 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.6e-05     0.012      28      89 ..     256     320 ..     251     331 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkld.kekylsltinfsaqt..sanqlqdiiesklekr 89 
                 +l++++  +l++G  GtGKt ++ +++ +l+ +++++ + + + a t   a+++ + + ++l+k 
  EGE27089.1 256 KLVSKQAFCLITGGPGTGKTFTVAQIVIALNqRDEHKKMRLGLAAPTgkAAQRMSESLLKSLDKA 320
                 57899999*****************5555543788888888888776324666777777777775 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.9e-05     0.022     115     158 ..     248     290 ..     221     294 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.9e-05
       T2SSE 115 kekiaevlrkavrerglilvsGgTgsGKttllyallkeinksde 158
                 + +++++++  v+++   l++Gg g+GKt ++  ++  +n++de
  EGE27089.1 248 NTEQRDAIKL-VSKQAFCLITGGPGTGKTFTVAQIVIALNQRDE 290
                 4555666655.5999*****************999999999876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00021      0.15       4      75 ..     251     321 ..     248     383 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00021
                 HHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   4 QaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid 75 
                 Q+ ai+l+ ++  +l+ +  G+GKT   +  v+ ++ ++++ ++ +  + +Pt + a+ + + l k++++++
  EGE27089.1 251 QRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVI-ALNQRDEHKKMRLGLAAPTGKAAQRMSESLLKSLDKAN 321
                 999**********************99888888.44444788888999999*******99999988887633 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013     0.096      21      57 ..     250     285 ..     237     295 .. 0.83
   2 ?   -1.8   0.0       2.6     2e+03      47      63 ..     366     382 ..     366     441 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
      AAA_25  21 prrwlvkgllpagelallaGapgtGKttlaldlalav 57 
                 ++r+ +k +  +++++l++G pgtGKt+ + ++++a+
  EGE27089.1 250 EQRDAIKLV-SKQAFCLITGGPGTGKTFTVAQIVIAL 285
                 566677766.79******************9998875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.6
      AAA_25  47 ttlaldlalavatGkpw 63 
                 t la++l +a+atG+ +
  EGE27089.1 366 TELASQLFAAIATGCRV 382
                 56888999999988865 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.6e-05     0.042       3      54 ..     264     313 ..     262     432 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.6e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-H CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsl 54 
                 ++++G +G GKT  +++++ a+ +++  ++ ++l +  + ++  ++  + sl
  EGE27089.1 264 CLITGGPGTGKTFTVAQIVIALNQRDEHKK-MRLGLAAPTGKAAQRMSE-SL 313
                 789***********************7776.698888888877776554.44 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00025      0.19       9      60 ..     248     300 ..     243     316 .. 0.77
   2 ?   -1.0   0.0       1.7   1.2e+03      96     130 ..     355     390 ..     353     409 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
                      HHHHHHHHHHCTSSS-EEEECSTTSSHHH.HHHHHHHHSTTTTS-EEEEETTT CS
  Sigma54_activat   9 kelleqikkvaktdlsvlitGesGtGKel.laraiheaskrkekpfvavncaa 60 
                      ++  + + k++++++ +litG  GtGK++ +a+ + + ++r+e++ +++  aa
       EGE27089.1 248 NTEQRDAIKLVSKQAFCLITGGPGTGKTFtVAQIVIALNQRDEHKKMRLGLAA 300
                      555666778889999************97367888888888887777666655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.7
                      EEEEETGGGS-HHHHHHHHHHHHHS.EEESBTSSSE CS
  Sigma54_activat  96 tlfLDeigelplelQekLlrvlqeg.evervGsske 130
                      +l +De + l +el ++L+ ++ +g +v  +G++++
       EGE27089.1 355 MLIIDEASMLGTELASQLFAAIATGcRVILLGDTHQ 390
                      689999999999999999999998734667777655 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00017      0.12      19      42 ..     261     284 ..     254     294 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
      ATPase  19 grvvlitGepGtGKtifalqFlik 42 
                 ++  litG+pGtGKt+ ++q +i 
  EGE27089.1 261 QAFCLITGGPGTGKTFTVAQIVIA 284
                 6678*************9997765 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.4   0.00026      0.19     285     345 ..     607     656 ..     133     660 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00026
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 285 ekipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfis 345
                 +  + iT+H++ G+E+  V ++   +g+   +           k l Y a+TRAk+++ i 
  EGE27089.1 607 STAYAITVHKSQGSEWQKVAIIF--DGNSERLL---------SKELIYTAVTRAKSAVHIY 656
                 556679*************7765..55543233.........3669*********998875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   0.00061      0.46       2      24 ..     265     287 ..     264     409 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00061
                 EEESSTTSSHHHHHHHHHHHHTH CS
         AAA   2 llyGppGtGKTllakavakelgv 24 
                 l++G pGtGKT ++ +++  l++
  EGE27089.1 265 LITGGPGTGKTFTVAQIVIALNQ 287
                 899***********999988763 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       6.6   4.9e+03     136     160 ..     105     134 ..      84     138 .. 0.70
   2 ?   11.3   0.1   0.00033      0.25      22      56 ..     259     295 ..     237     361 .. 0.75
   3 ?   -1.4   0.1       2.8   2.1e+03      98     136 ..     434     483 ..     411     507 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.6
                 EEEETGGGTTS.....T.TTHHHHHT---S CS
      ResIII 136 iiiDEaHrlgak....k.swreilekfkea 160
                  ++D  Hr +++    k +++++l++f+++
  EGE27089.1 105 AFFDAYHRCADDtikiKqFVNHALNHFRQQ 134
                 689999999998544423555567777665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00033
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.......- CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkee..k 56 
                  ++   li    GtGKT++ a+++ +l +  + +  +
  EGE27089.1 259 SKQAFCLITGGPGTGKTFTVAQIVIALNQRDEHKkmR 295
                 456667799999************9999976665344 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.8
                 ......-SEEEEEHHHHHHTH....................HHHTTT-SEE CS
      ResIII  98 ekdstnkkilvttiqsldadseee............eeeseellrdrfdvi 136
                  ++++  +i++ +iq+l +  + +            + + ++l++d++d++
  EGE27089.1 434 LINDDRQNIHFDEIQQLINCHT-KidfhpithalmhNDTYQKLSQDYQDYF 483
                 4456677788888888877773.3366666667766555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 4267.38
//
Query:       EGE27090.1  [L=341]
Description: dihydrouridine synthase TIM-barrel protein nifR3 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-98  329.7   0.0    1.8e-98  329.5   0.0    1.0  1  Dus           Dihydrouridine synthase (Dus)
    2.7e-07   30.3   2.8    0.00011   21.7   0.7    1.5  2  His_biosynth  Histidine biosynthesis protein
    6.7e-06   25.6   0.1     0.0029   16.9   0.1    2.2  2  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
    1.4e-05   24.5   0.3      0.074   12.2   0.1    2.1  2  DHO_dh        Dihydroorotate dehydrogenase
      7e-05   22.1   0.0    0.00014   21.1   0.0    1.4  1  NanE          Putative N-acetylmannosamine-6-phosphate epimer
     0.0035   16.5   1.1       0.16   11.1   0.5    2.3  2  DUF561        Protein of unknown function (DUF561)
     0.0074   16.0   0.5      0.041   13.5   0.1    2.1  2  Pterin_bind   Pterin binding enzyme
      0.008   15.7   0.4      0.015   14.8   0.4    1.5  1  PEP_mutase    Phosphoenolpyruvate phosphomutase
  ------ inclusion threshold ------
      0.012   14.9   0.5      0.043   13.1   0.4    1.8  2  ThiG          Thiazole biosynthesis protein ThiG
      0.047   13.3   0.3        2.1    7.9   0.0    2.3  2  MR_MLE_C      Enolase C-terminal domain-like
      0.071   12.2   0.0       0.16   11.1   0.0    1.6  1  PdxJ          Pyridoxal phosphate biosynthesis protein PdxJ
      0.085   12.9   0.6       0.16   12.0   0.1    1.7  1  U62_UL91      Functional domain of U62 and UL91 proteins
       0.12   11.4   1.9       0.16   11.0   0.5    1.7  1  FMN_dh        FMN-dependent dehydrogenase
       0.12   11.8   0.0       0.25   10.8   0.0    1.5  1  PcrB          PcrB family


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.5   0.0  1.4e-101   1.8e-98       2     308 ..      34     339 ..      33     341 .] 0.98

  Alignments for each domain:
  == domain 1  score: 329.5 bits;  conditional E-value: 1.4e-101
                 E---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGTSCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEETTEEEG CS
         Dus   2 laPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeeetplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkvtrggaG 100
                 +aPmagvtd pfR+l++ fga+  +v+em+ a   ++++k+++ + +++ e  p++ Q++g++p+ la+aA++ ++ ga+++d+N+GCP+kkv r+ aG
  EGE27090.1  34 VAPMAGVTDNPFRRLCKSFGAG-HAVSEMIIADTALYARKKSLYRANFDGEIAPISAQIAGAEPDKLAQAAQFQVANGAQIVDINMGCPAKKVCRKLAG 131
                 79********************.**************************************************************************** PP

                 GGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHH CS
         Dus 101 aaLlrkpdlvaqivkavvkaveiPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaq 199
                 +aLl+++dlv +++  +v av++Pvt+k+r+g  + +en+l++a+i+e+aG++a+t+HgRtr+++y+g+a++e I +vk+a +ip+i+NGdI ++++a 
  EGE27090.1 132 SALLQDEDLVRRLLDSAVLAVDVPVTLKTRLGFANGQENILKIAQIAEQAGVAAITIHGRTREDFYTGQARYELITQVKKAAKIPIIVNGDIDSPQKAL 230
                 *************************************************************************************************** PP

                 HHHHHH--SEEEESCHHCCSTTHHHH.HHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHCC CS
         Dus 200 aileetGadgvmigrgalgnPwlfae.stavktgeaepapplaeeaeiveehlkkleeelgedkglrkirkhlawylkglkkaaelrreleevsdkeea 297
                 +i ++tGad+vmigr+a+g+Pwlf++  + ++tge   +p++ e +e+v +hl++l +++ge +g r +rkh+awy  gl++++ +r+++ ++++ +e+
  EGE27090.1 231 DIQAKTGADAVMIGRAAQGKPWLFQQiAHFANTGELLASPTVGEIHEVVLRHLDELYRFYGEYSGCRIARKHIAWYTGGLPNSNAFRDAMYACETTKEQ 329
                 *************************************************************************************************** PP

                 HHCHH.HHCCC CS
         Dus 298 lenleeaalka 308
                  e ++ +++k 
  EGE27090.1 330 FEVVD-KFFKT 339
                 99998.66665 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.7   8.8e-08   0.00011      94     222 ..     123     246 ..      96     251 .. 0.82
   2 !   16.2   0.1   4.2e-06    0.0053      60     121 ..     201     263 ..     197     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.8e-08
                   CT-SEEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEECEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---H.HHHHHHHHH CS
  His_biosynth  94 agadkviigtaavknpelikelaekfgsqkivvaiDarrgykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdl.eltkelaea 189
                     + +   g+a +++ +l+++l++     + v+a+D+     + ++ +  + + +++++a+ +e++g+++i ++   r+   +G    el+ ++++a
    EGE27090.1 123 KKVCRKLAGSALLQDEDLVRRLLD-----SAVLAVDVPVT--LKTRLGFANGQENILKIAQIAEQAGVAAITIHGRTREDFYTGQARyELITQVKKA 212
                   445677789**************9.....58999998875..5566666666666*****************************9866********* PP

                   HSSEEEEESS--SHHHHHHHH.HTTCSEEEESHH CS
  His_biosynth 190 vkipviasGGvgsledlkelk.segvdavivgsa 222
                    kip+i+ G + s++   +++ ++g+dav++g+a
    EGE27090.1 213 AKIPIIVNGDIDSPQKALDIQaKTGADAVMIGRA 246
                   ****************9999978899******98 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 4.2e-06
                   HHHHHHHHHHHH-SSEEEEESSSSSHHHHHHH.HHCT-SEEEESHHHHH-THHHHHHHHHHCG CS
  His_biosynth  60 anldlveeiaeevfipvqvGGGIrsledveel.leagadkviigtaavknpelikelaekfgs 121
                   a ++l++++ ++ +ip+ v G I s +++ ++  + gad v+ig aa  +p l++++a++ + 
    EGE27090.1 201 ARYELITQVKKAAKIPIIVNGDIDSPQKALDIqAKTGADAVMIGRAAQGKPWLFQQIAHFANT 263
                   56799*********************99888735789********************997765 PP

>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0     0.003       3.9       4      27 ..      19      42 ..      16      68 .. 0.88
   2 !   16.9   0.1   2.3e-06    0.0029     260     337 ..     183     259 ..     157     263 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.003
                  S-EEETTEEESSSEEE----S-TT CS
  Oxidored_FMN  4 kPikignmtLknRivmapmtrlra 27
                  +P+ ig  +++nRi +apm  +  
    EGE27090.1 19 QPLSIGGLKIENRIWVAPMAGVTD 42
                  8******************98765 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2.3e-06
                   T-SSSSSTTS-TTTTHHHCCTTHHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHC CS
  Oxidored_FMN 260 lalvhaaeprkrgagsvrteqekntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkk 337
                   +a +++   r r+ + +     +   +vk+ +k p+i  g i++++ka +i a+  ad v +gR+    p l +++++
    EGE27090.1 183 VAAITIHG-RTREDFYTGQARYELITQVKKAAKIPIIVNGDIDSPQKALDIQAKTGADAVMIGRAAQGKPWLFQQIAH 259
                   34444444.444444444433356689**************************************9999999998876 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0002      0.26      89     194 ..      77     187 ..      56     200 .. 0.64
   2 !   12.2   0.1   5.8e-05     0.074     232     288 ..     204     258 ..     197     262 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0002
                 HHHHCC.CEEEEEEE-TTSS.HHHHHHHHHHHHG..GGESEEEEES-SCTCCTSCCCG.....CHHHHHHHHHHHHHHHHSSEEEEEE-SSSS..HHHH CS
      DHO_dh  89 keqeekkelginlskakktenavddyvevvrkig..pfadilelNvSsPntpglrdlq.....ekeelkaillkvvkevskvpvlvKlaPdlt..deek 178
                 + +++ ++++i++ +a+++     d  + +++++  + a+i+ +N+ +P  +  r+l+     ++e+l + ll+    + +vpv  K     +  +e++
  EGE27090.1  77 RANFDGEIAPISAQIAGAE----PDKLAQAAQFQvaNGAQIVDINMGCPAKKVCRKLAgsallQDEDLVRRLLDSAVLAVDVPVTLKTRLGFAngQENI 171
                 3334447899999999997....555555666665699***********99877766522222455666666655555556888877544333114445 PP

                 HHHHHHHHHHTECEEE CS
      DHO_dh 179 kdiadvllelkldgii 194
                  +ia+ + + ++++i 
  EGE27090.1 172 LKIAQIAEQAGVAAIT 187
                 5566666666666665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.8e-05
                 HHHHHHHHHTTT.S-EEEESS--SHHHHHH.HHHHTECEEEESHHHHHHGTCHHHHHH CS
      DHO_dh 232 kvirelykrlkkeipiIgvGGiesgeDale.kieaGAslvqvytalvfegpkiakkik 288
                 ++i +++k  k  ipiI  G i s + al+ +++ GA +v ++ a     p+++++i 
  EGE27090.1 204 ELITQVKKAAK--IPIIVNGDIDSPQKALDiQAKTGADAVMIGRAA-QGKPWLFQQIA 258
                 56777777777..*****************55899********999.77888888885 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.1e-07   0.00014     107     175 ..     177     246 ..     165     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.1e-07
                 HHHHTT-SEEE-TTTTSSTTS-..SS--HHHHHHHHH.TT--EEEES---SHHHHHHH.HTT--SEEEE-HH CS
        NanE 107 vakklGvdivGttlsGytkeeek.aepDfalvkalse.aglkviaeGrintPekakka.ieiGvdavvvGsa 175
                 +a+++Gv  +  t+ G t e     +  ++l+ ++++ a++ +i++G i++P+ka ++  ++G+dav++G a
  EGE27090.1 177 IAEQAGVAAI--TIHGRTREDFYtGQARYELITQVKKaAKIPIIVNGDIDSPQKALDIqAKTGADAVMIGRA 246
                 6777887765..9999999887757889*****998726899*************9983579********88 PP

>> DUF561  Protein of unknown function (DUF561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.012        15      78     132 ..     107     161 ..      83     194 .. 0.69
   2 !   11.1   0.5   0.00013      0.16      27      88 ..     169     244 ..     162     248 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.012
      DUF561  78 vkaGadlveiGnfdslYeq.grklsseeilalvkevrkLlPktdlsvtiPyiLkle 132
                 v+ Ga++v+i n  +  ++  rkl  + +l   + vr+Ll ++ l+v +P  Lk  
  EGE27090.1 107 VANGAQIVDI-NMGCPAKKvCRKLAGSALLQDEDLVRRLLDSAVLAVDVPVTLKTR 161
                 6789999999.777765542689999999999999***************999853 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00013
      DUF561  27 eqvlkiaraaekakatyvDi...........aadpklvkkvksvsniPiCvsa.vea..kllleavkaGadlveiG 88 
                 e++lkia+ ae+a ++ + i            a  +l+ +vk++++iPi v + +++  k+l    k+Gad v iG
  EGE27090.1 169 ENILKIAQIAEQAGVAAITIhgrtredfytgQARYELITQVKKAAKIPIIVNGdIDSpqKALDIQAKTGADAVMIG 244
                 677888888888877777773222222222235568***************8657743366777789******999 PP

>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   3.2e-05     0.041      16      42 ..      92     118 ..      85     125 .. 0.86
   2 ?    0.2   0.0      0.38   4.9e+02     103     134 ..     168     199 ..     165     242 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.2e-05
                  HCTHHHHHHHHHHHHHHTT-SEEEEES CS
  Pterin_bind  16 kfedldkalaqarkmveeGAdilDigg 42 
                     ++dk  ++a+ +v++GA+i+Di++
   EGE27090.1  92 AGAEPDKLAQAAQFQVANGAQIVDINM 118
                  457899*******************98 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.38
                  TSSSTTHHHHHHHHT-EEEEESECSSTTTHCC CS
  Pterin_bind 103 eerdpkmlelvaeagaavvvmhmrgtpktmqe 134
                  +e+  k+++++ +ag+a +  h r++ +  + 
   EGE27090.1 168 QENILKIAQIAEQAGVAAITIHGRTREDFYTG 199
                  55667899999999999999999944433333 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   1.2e-05     0.015      63     146 ..     147     225 ..     135     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
  PEP_mutase  63 aiaevvslPlivDledGygespeevaetvrrliaaGvvgvniEDkkkndaerqlldieefaekiaaaraaaeeagfvinARtda 146
                 + + +v++P+++  + G+++ +e++ +  + +++aGv++++i  +    +++++++ +   e i+++++aa+  ++++n  +d+
  EGE27090.1 147 SAVLAVDVPVTLKTRLGFANGQENILKIAQIAEQAGVAAITIHGR----TREDFYTGQARYELITQVKKAAKI-PIIVNGDIDS 225
                 456689************************************999....466788888888888888777754.6777777766 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.68   8.7e+02     133     179 ..     137     186 ..     134     197 .. 0.72
   2 ?   13.1   0.4   3.4e-05     0.043     160     206 ..     199     246 ..     172     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.68
                 -HHHHHHHHHTT-SEB.EE..BSSSTTS----S-HHHHHHHHHH-SS-BE CS
        ThiG 133 DlvlarrleevGcaav.mP..laapiGsglGllnkealkiiieeakvPvi 179
                 D  l rrl +  + av +P  l + +G ++G +n  ++  i e+a v  i
  EGE27090.1 137 DEDLVRRLLDSAVLAVdVPvtLKTRLGFANGQENILKIAQIAEQAGVAAI 186
                 55566777777777775452255778888888888888888888877655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.4e-05
                 --S-HHHHHHHHHH-SS-BEEES---SHHHHHHH.HHTT-SEEEESHH CS
        ThiG 160 GllnkealkiiieeakvPvivDAGigspsdaaqa.melGadavllnta 206
                 G +  e ++ + + ak+P+iv+  i sp++a     + Gadav++  a
  EGE27090.1 199 GQARYELITQVKKAAKIPIIVNGDIDSPQKALDIqAKTGADAVMIGRA 246
                 666778888999999***************98652689******9876 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.061        78     129     152 ..     162     185 ..     151     193 .. 0.82
   2 ?    7.9   0.0    0.0016       2.1      87     156 ..     203     272 ..     192     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.061
                 HHHHTSHHHHHHHHHHHHHTT-EE CS
    MR_MLE_C 129 vsrvgGitearkvaalaeafgvpv 152
                 ++ + G  + +k+a++ae++gv  
  EGE27090.1 162 LGFANGQENILKIAQIAEQAGVAA 185
                 5667899999***********984 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHH.SSEEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS CS
    MR_MLE_C  87 leglaelrara.sipiaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHs 156
                 +e + +++ +a +ipi+++ +++s++ + ++ ++ ++d+v++  +  g +  ++++a+ a + ++  +p +
  EGE27090.1 203 YELITQVK-KAaKIPIIVNGDIDSPQKALDIQAKTGADAVMIGRAAQGKPWLFQQIAHFANTGELLASPTV 272
                 55667777.5569***********************************************99888888766 PP

>> PdxJ  Pyridoxal phosphate biosynthesis protein PdxJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.16      20      50 ..     168     198 ..     150     249 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                 -S-HHHHHHHHHCCT.SEEEEE--TT-SSS- CS
        PdxJ  20 ePdvveaaelaeeaGAdgitvhlreDrRhiq 50 
                 + +++++a++ae+aG+  it+h r  +   +
  EGE27090.1 168 QENILKIAQIAEQAGVAAITIHGRTREDFYT 198
                 56899*****************876544433 PP

>> U62_UL91  Functional domain of U62 and UL91 proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00013      0.16       7      32 ..     315     340 ..     312     341 .] 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
    U62_UL91   7 elkddfeacetkeDlFkiiDklsknf 32 
                   +d   acet+++ F ++Dk +k +
  EGE27090.1 315 AFRDAMYACETTKEQFEVVDKFFKTI 340
                 5678899****************986 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   0.00013      0.16     230     303 ..     175     247 ..     170     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                 HHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHH.TT-SEEEESHHH CS
      FMN_dh 230 akraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAla.lGAdavllGRpf 303
                 a+ a +aGv +i +       + + +a  + + ++ +a++  i+++v g i + + +l   a  GAdav++GR++
  EGE27090.1 175 AQIAEQAGVAAITIHGRTREDFYTGQARYELITQVKKAAK--IPIIVNGDIDSPQKALDIQAkTGADAVMIGRAA 247
                 6678888888888855544555667777788888888886..*************999988757*********85 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0002      0.25     170     214 ..     204     250 ..     195     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
                 HHHHHHHHHSSSEEEEESS--SHHHHHHHHCC..SSEEEE-CHHHHH CS
        PcrB 170 evialkkklekarlivGGGirsaEkAkevvea..ADvivvGnvveek 214
                 e+i  +kk  k+ +iv G i+s+ kA ++  +  AD++++G + + k
  EGE27090.1 204 ELITQVKKAAKIPIIVNGDIDSPQKALDIQAKtgADAVMIGRAAQGK 250
                 4566678889999*************98755458******9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2349.23
//
Query:       EGE27091.1  [L=536]
Description: exodeoxyribonuclease VII large subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-59  199.9   5.5      2e-58  198.4   3.4    2.0  2  Exonuc_VII_L  Exonuclease VII, large subunit
    8.3e-17   61.2   0.1    2.5e-16   59.7   0.0    1.9  2  tRNA_anti_2   OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.051   13.3   1.3       0.11   12.2   0.0    2.0  2  Rep_trans     Replication initiation factor


Domain annotation for each model (and alignments):
>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.027   1.6e+02     169     220 ..      27      76 ..      10     148 .. 0.76
   2 !  198.4   3.4   3.3e-62     2e-58       1     303 [.     205     525 ..     205     526 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.027
  Exonuc_VII_L 169 qrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelker 220
                   +++e+l s+l +pe+ll+++rq  +++e++l +  +  ++++ ++l  ++ +
    EGE27091.1  27 KHVEALGSTLDDPETLLNKHRQIAESFEAKLAK--EAVFDENFNNLADAHLS 76 
                   56778889999***************9999999..44555555555555533 PP

  == domain 2  score: 198.4 bits;  conditional E-value: 3.3e-62
  Exonuc_VII_L   1 lfdeerkkplpklpkrigvvtsptgaairDilr..tlkrrgplveillfpalvQGeeaaaeiikalek.analkea.....DvliiaRGGGSleDLw 89 
                   l++ ++k ++p+ ++++ v+ ++++a+++D+    +      ++++++  a++QG++a++ei  a+++ +n+ k+      D+l+i+RGGG++ DL+
    EGE27091.1 205 LLHLNKKHAIPFDIRHVIVIAPEKAAGLGDFRAeaDRLALAGACQFHYHYATFQGNHAPNEIRLAISEgMNNFKNTydtlpDLLVIIRGGGAVGDLA 301
                   57789****************************5544555678***********************88555555558899***************** PP

  Exonuc_VII_L  90 aFndeelaraiaaskiPvisavGHEtDttiaDfvAdlrapTPtaaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrlk.speell 185
                   ++nd ela  +a+++iPv+ ++GHE+D  i+D vA+ +++TP++a   + ++  ++++q  ++++rl+k ++++l+ ++++ ++  ++++ s+ + +
    EGE27091.1 302 YLNDFELAALVAECPIPVWVGIGHERDSVILDEVAHSSFDTPSKAILGIESHLVKMTRQAVATMDRLTKMTNTHLTMAQANSQRQIEKIQrSSLHAV 398
                   *************************************************************************998887777777677753444444 PP

  Exonuc_VII_L 186 erk.rqrldeleerleralkkqlkkkrerleelkerl.k......ekleekkerlkklkerle.......lleekkerleeleeklealsplkvLkr 267
                   + + +++l +  ++++++ k + ++++++l+ l +++ k      +    ++++++k+  +l+        l++ k+++++l++ +   +p+++Lk+
    EGE27091.1 399 NMAkKDNLYQ-LSHIKSTAKFRHHQEKSALTALLAQTqKsslaiiS----QAKHTTKI--HLDqhnilfdYLSKLKKDCRHLQSLILIQHPSRMLKK 488
                   4441333333.34444445555556666666666555334432221....22222222..22233445558************************** PP

  Exonuc_VII_L 268 Gyaivrk.edgkvvtsakdlkkgdeleirladgevka 303
                   Gy+++++ ++++ ++s+k+l+++++++i+++dg+v+a
    EGE27091.1 489 GYTLIHNaQTNESIHSTKTLQQNQSVKITFKDGTVSA 525
                   *********************************9976 PP

>> tRNA_anti_2  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   4.1e-20   2.5e-16       1      95 []      75     181 ..      75     181 .. 0.87
   2 ?   -3.3   0.0       1.8   1.1e+04      62      87 ..     514     523 ..     493     533 .. 0.53

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 4.1e-20
  tRNA_anti_2   1 lsVseltraikelleaelkkavwvrGeisnlkrkasghvYftLkDek......akisavifrsraaklk..ft......ledGmkVlvkgrlsvYepr 84 
                  ls+s++ +a+k ++++++ ++vwvr+ei  + + + gh+Yf+L +++      a+++a+++r ra+++   ft      l+ G  Vlvk+++s+++++
   EGE27091.1  75 LSLSDYLTAVKMVIDDSFDHEVWVRAEIRAM-NTKGGHYYFELAETDdvdqitASCRATLWRFRAKTVMskFTkmtgqsLQAGILVLVKCSASFHANY 171
                  5899999************************.55699*******85557888899*******888777656224556669****************** PP

  tRNA_anti_2  85 Gsyqlivedie 95 
                  G ++l+++di+
   EGE27091.1 172 G-FSLNISDID 181
                  *.******995 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.8
  tRNA_anti_2  62 lkftledGmkVlvkgrlsvYeprGsy 87 
                  +k+t++                +G++
   EGE27091.1 514 VKITFK----------------DGTV 523
                  223333................3333 PP

>> Rep_trans  Replication initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.8e-05      0.11      83     129 ..      91     137 ..      84     157 .. 0.82
   2 ?   -1.5   0.4      0.28   1.7e+03     135     142 ..     396     403 ..     345     457 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
   Rep_trans  83 sle.skwvRyElelknekavivvdellnklaeleeiaasiineklrfv 129
                 s++ ++wvR+E++  n+k  ++  el  +  ++ +i+as+ ++  rf 
  EGE27091.1  91 SFDhEVWVRAEIRAMNTKGGHYYFELA-ETDDVDQITASCRATLWRFR 137
                 45679**********************.************99999992 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.28
   Rep_trans 135 nksrvktt 142
                 +  ++ ++
  EGE27091.1 396 HAVNMAKK 403
                 22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1517  (0.0846115); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3722.84
//
Query:       EGE27092.1  [L=378]
Description: polyphosphate kinase 2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.6e-105  350.5   3.0   4.6e-105  350.2   3.0    1.1  1  PPK2       Polyphosphate kinase 2 (PPK2)
  ------ inclusion threshold ------
      0.035   14.1   0.9       0.54   10.2   0.1    2.3  2  DUF327     Protein of unknown function (DUF327)
      0.082   11.9   0.0       0.15   11.1   0.0    1.4  1  MeaB       Methylmalonyl Co-A mutase-associated GTPase MeaB
       0.12   12.5   0.1       0.33   11.0   0.1    1.8  1  Hormone_3  Pancreatic hormone peptide
       0.12   12.5   0.1       0.33   11.1   0.1    1.8  1  LigA       Aromatic-ring-opening dioxygenase LigAB, LigA subu


Domain annotation for each model (and alignments):
>> PPK2  Polyphosphate kinase 2 (PPK2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.2   3.0  1.3e-108  4.6e-105       2     227 ..     112     337 ..     111     339 .. 0.99

  Alignments for each domain:
  == domain 1  score: 350.2 bits;  conditional E-value: 1.3e-108
                 --HHHHHHHHHHHHHHHHHHHHSGGGGG-EEEEEEEESTTS-HHHHHHHHHTTS-GGG-EEEE--S--HHHHTS-TTHHHHTT---TT-EEEEES-GGG CS
        PPK2   2 lskdeyeeelaklqielvklqekvkaegkklvvifegrDaAGKgGaikrvtealnprvarvvalkaPteeEksqwylqRyvehlPakgeivlFdRswYn 100
                 ls+++ye+++ klqiel+klq+++k++g+klv+ifegrDaAGKgG+ikr++e+lnpr+arvval++Pte+E++qwy+qRyv+hlP++geivlFdRswYn
  EGE27092.1 112 LSRKNYEAQKYKLQIELLKLQHHIKTTGQKLVIIFEGRDAAGKGGTIKRFMEHLNPRGARVVALEKPTEQERGQWYFQRYVQHLPTAGEIVLFDRSWYN 210
                 7899*********************************************************************************************** PP

                 GGTHHHHHTSS-HHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSS-CCC---CCCCCHHHCHHHHHHHHHHHHHHH--SSS-EE CS
        PPK2 101 ragvervmgfctdkeaerflreipefErmlvesgillvKfwlsiskeeqleRfkeRredPlkqwKlsplDlksrekWddytkakeemlartdteeaPWi 199
                 ra+vervmgfctd+e++ f++++pefE+ lvesgi+lvKfw+s+s+eeq  Rf +R++dPlkqwKlsp+D +s +kWddyt ake+m+ +tdt+e PWi
  EGE27092.1 211 RAVVERVMGFCTDEEYRIFMHQVPEFEKHLVESGIHLVKFWFSVSREEQRVRFASRENDPLKQWKLSPVDKASLNKWDDYTLAKEAMFFNTDTAEVPWI 309
                 *************************************************************************************************** PP

                 EEE-SSHHHHHHHHHHHHHHHHHHHHHH CS
        PPK2 200 vveaddKkrarlnvirtllkalkyeeke 227
                 v+++d Kkrarln +r +l++l ye+k+
  EGE27092.1 310 VIKSDCKKRARLNAMRYVLNKLTYENKD 337
                 ************************9986 PP

>> DUF327  Protein of unknown function (DUF327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00015      0.54      16      79 ..      16      81 ..       3     103 .. 0.70
   2 ?    2.6   0.2     0.033   1.2e+02      34      81 ..     116     167 ..      82     189 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
                XXXX.XXXXX-HHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH CS
      DUF327 16 tkkk.ekkkksFsetl.ekeeeeeseeelkelleeidkqgerLaesrtiedlkkYkklvkeflkev 79
                t ++  kk++s  +++ +++e++ +  + + ++++   q e+L e+ t+e+l+++ ++ ke+l  +
  EGE27092.1 16 TATTvPKKTTSTRTKVsTATETKPKPSKAEAIMTQTVGQLEELLEHATPEELAEFGEALKEYLPTT 81
                22224344444444443777788888999*********************************9754 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.033
                 HHH....HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH CS
      DUF327  34 eee....eseeelkelleeidkqgerLaesrtiedlkkYkklvkeflkevvk 81 
                 + e    + + el +l++ i+++g++L    + +d +     +k+f++++  
  EGE27092.1 116 NYEaqkyKLQIELLKLQHHIKTTGQKLVIIFEGRDAAGKGGTIKRFMEHLNP 167
                 433333466777999************9877777777777777777776655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.1e-05      0.15      19      62 ..     131     174 ..     118     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.1e-05
                 HHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEE CS
        MeaB  19 lerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvav 62 
                 l++ ++++G+  v+ + G   aGk  ++++++++l  rG rv  
  EGE27092.1 131 LQHHIKTTGQKLVIIFEGRDAAGKGGTIKRFMEHLNPRGARVVA 174
                 4566789**********************************964 PP

>> Hormone_3  Pancreatic hormone peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   9.3e-05      0.33       9      27 ..      60      78 ..      59      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.3e-05
                TTS-HHHHHHHHHHHHHHH CS
   Hormone_3  9 edaspEeLakYyaaLrhYl 27
                e a+pEeLa +  aL++Yl
  EGE27092.1 60 EHATPEELAEFGEALKEYL 78
                579***************8 PP

>> LigA  Aromatic-ring-opening dioxygenase LigAB, LigA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.2e-05      0.33       2      42 ..     248     288 ..     247     306 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.2e-05
                 HHHHHGGGSHHHHHHHHHSHHHHHHHS---HHHHHHHHTT- CS
        LigA   2 nkflmsLneaenRerFladeeayldeygLteeqkeavlard 42 
                  kf +s  ++e R rF++ e+  l++++L++ +k  + + d
  EGE27092.1 248 VKFWFSVSREEQRVRFASRENDPLKQWKLSPVDKASLNKWD 288
                 5899****************************999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 2832.43
//
Query:       EGE27093.1  [L=128]
Description: hypothetical protein EA1_04585 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1056.24
//
Query:       EGE27094.1  [L=68]
Description: hypothetical protein EA1_04590 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 563.32
//
Query:       EGE27095.1  [L=39]
Description: hypothetical protein EA1_04595, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 301.48
//
Query:       EGE27143.1  [L=77]
Description: hypothetical protein EA1_03805, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   21.0   2.2     0.0021   18.1   0.2    2.2  2  PT-VENN     Pre-toxin domain with VENN motif
  ------ inclusion threshold ------
      0.024   14.3   0.0      0.035   13.9   0.0    1.2  1  Sensor_TM1  Sensor N-terminal transmembrane domain


Domain annotation for each model (and alignments):
>> PT-VENN  Pre-toxin domain with VENN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2     0.012     1e+02      20      42 ..      15      24 ..       1      31 [. 0.63
   2 !   18.1   0.2   2.3e-07    0.0021       2      28 ..      36      62 ..      35      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.012
     PT-VENN 20 aGlaGgvvggtladavaGaeage 42
                aG +G+vvg             e
  EGE27143.1 15 AGSIGAVVG-------------E 24
                555555555.............3 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2.3e-07
     PT-VENN  2 seLteeEKqtvsalstlaaGlaGgvvg 28
                ++Lt+++K ++++ ++l+aG++++ + 
  EGE27143.1 36 NTLTQAQKDKLINQAKLIAGITAAFAD 62
                68********************99876 PP

>> Sensor_TM1  Sensor N-terminal transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.9e-06     0.035      39      62 ..      36      59 ..      29      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.9e-06
  Sensor_TM1 39 dgLidarvesLltqaeliAdviea 62
                + L +a+ + L +qa+liA++ +a
  EGE27143.1 36 NTLTQAQKDKLINQAKLIAGITAA 59
                5799******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 636.55
//
Query:       EGE27144.1  [L=79]
Description: hypothetical protein EA1_03810 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 611.86
//
Query:       EGE27145.1  [L=122]
Description: hypothetical protein EA1_03815 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 977.20
//
Query:       EGE27146.1  [L=123]
Description: hypothetical protein EA1_03820 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 899.97
//
Query:       EGE27147.1  [L=380]
Description: hypothetical protein EA1_03825 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0016   17.9   0.0     0.0028   17.1   0.0    1.3  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-07    0.0028      93     178 ..     182     281 ..     174     301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-07
                 HHHHHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTT.....SHHHHHH.HHTHHHHHH..HHTT.......TTEEEEEEE-SSSHHHHHHHH CS
        PALP  93 kvallrllGaevvevggdydeavaaaaelaaegegaylvsqfd.....nptvieg.ygtiglEil..eqlg.......gkpdavvvpvGgGgliaGiaa 176
                 k + l +lGa+vv + ++  ea +a+a++a + + + l++  d     n +++   y+ +  Ei   ++ g       +++ ++  ++  Ggl aGi a
  EGE27147.1 182 KERVLTELGAQVVITAESGREAPKAVAKFADR-QAFKLIQNLDelnnkNIDITSDeYQNTIKEIDkwSEGGiyrvalhTAVATLATGTAQGGLSAGITA 279
                 5667889********999**************.**********9987777777777********43344447665555777778888888888888877 PP

                 HH CS
        PALP 177 gl 178
                 + 
  EGE27147.1 280 YT 281
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2750.08
//
Query:       EGE27148.1  [L=81]
Description: hypothetical protein EA1_03830 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 648.46
//
Query:       EGE27149.1  [L=44]
Description: hypothetical protein EA1_03835, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 362.65
//
Query:       EGE27150.1  [L=120]
Description: hemolysin, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-08   34.4   6.8    2.6e-08   33.8   6.8    1.3  1  PT-VENN     Pre-toxin domain with VENN motif
  ------ inclusion threshold ------
      0.047   13.4   0.1      0.087   12.6   0.1    1.4  1  Sensor_TM1  Sensor N-terminal transmembrane domain


Domain annotation for each model (and alignments):
>> PT-VENN  Pre-toxin domain with VENN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   6.8   2.9e-12   2.6e-08       2      50 ..      11      56 ..      10      58 .. 0.97

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.9e-12
     PT-VENN  2 seLteeEKqtvsalstlaaGlaGgvvggtladavaGaeagenAVeNNfL 50
                ++Lt+++K ++++ ++l+aG++++ +g    d++++a ++  AV NN+L
  EGE27150.1 11 NTLTQAQKDKLINQAKLIAGITAAFAG---EDVNVAAGVAAEAVQNNAL 56
                68*************************...******************9 PP

>> Sensor_TM1  Sensor N-terminal transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.7e-06     0.087      40      64 ..      12      36 ..       7      40 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.7e-06
  Sensor_TM1 40 gLidarvesLltqaeliAdvieaql 64
                 L +a+ + L +qa+liA++ +a +
  EGE27150.1 12 TLTQAQKDKLINQAKLIAGITAAFA 36
                6999******************955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1003.06
//
Query:       EGE27151.1  [L=133]
Description: hypothetical protein EA1_03800 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1016.11
//
Query:       EGE27205.1  [L=166]
Description: putative 3-oxoacid CoA-transferase alpha subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-42  143.3   0.0    7.5e-42  143.2   0.0    1.0  1  CoA_trans  Coenzyme A transferase


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.0   4.2e-46   7.5e-42       2     121 ..       7     124 ..       6     154 .. 0.96

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 4.2e-46
                 CHHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTE..ECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHH CS
   CoA_trans   2 etaaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagv..lglgplllngsvkkviasyggetvnprfgkqflsgelefellpqg 98 
                 e+a+ a+a  +kd++t+avGGFgl+giPe+liaal ++gvk+lt+i+++agv  +glg+ll+++++kk+iasy+ge  n++f++qflsgele+el+pqg
  EGE27205.1   7 ENAKSALADIVKDNQTIAVGGFGLCGIPEQLIAALCDTGVKGLTCISNNAGVddFGLGLLLKTHQIKKMIASYVGE--NKEFERQFLSGELEVELTPQG 103
                 899*************************************************************************..********************* PP

                 HHHHHHHHHHHTEETTEEEESTT CS
   CoA_trans  99 tlaerlraGgaglpelgfltntg 121
                 tlae lraGgag+p  +fl +++
  EGE27205.1 104 TLAEKLRAGGAGIP--AFLPKQV 124
                 **************..9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1257.29
//
Query:       EGE27206.1  [L=155]
Description: 3-oxoacid CoA-transferase, B subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-25   87.8   2.2    1.6e-17   63.6   0.7    2.0  2  CoA_trans        Coenzyme A transferase
     0.0014   18.6   0.1     0.0019   18.2   0.1    1.3  1  AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal 


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   4.6e-10   4.2e-06     149     183 ..       3      36 ..       1      38 [. 0.92
   2 !   63.6   0.7   1.8e-21   1.6e-17      94     215 ..      35     145 ..      32     147 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.6e-10
                 EEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHE CS
   CoA_trans 149 advalikaskadeegnlvfeksagnfnkpaiaeaa 183
                 adval+ka+kad++gnl f+++a+nfn p++a+a 
  EGE27206.1   3 ADVALVKAYKADKAGNLIFRHTARNFN-PDVATAM 36 
                 7**************************.***9764 PP

  == domain 2  score: 63.6 bits;  conditional E-value: 1.8e-21
                 EHHHHHHHHHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEE CS
   CoA_trans  94 llpqgtlaerlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtilevee 192
                  +++g+ +  + +G+++++e+g+l+n++i     +k  +v+g+gGa+++++++ + +++l++++ +d+  +++ + +++ +++++++  +++t+l+v++
  EGE27206.1  35 AMIRGGKVNLAILGAMEVSEHGDLANWMIL----GK--MVKGMGGAMDLVTGVQW-VIVLMEHVAKDGSFKIKSNRTLPLTGQKVVH--RIITDLAVLD 124
                 699**************************9....66..****************7.*******************************..********** PP

                 EECTTSSECCCESBTGGGHSEEE CS
   CoA_trans 193 ivekgkldpekvliPgvlvdavv 215
                 i   ++ +++ +l +gv +++++
  EGE27206.1 125 I--TNNGLTLIELADGVHFEELQ 145
                 *..9********99999988775 PP

>> AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   2.1e-07    0.0019      27     143 ..      35     137 ..      11     148 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.1e-07
                      HHHTTSTTEEEEEE-SEEETTS-EESSECTTCCTCGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSECE-TTT-SEEEET CS
  AcetylCoA_hyd_C  27 eviaqnkkvvsinsalevdltGqvnseslggrvvsGvGgqldFvrgaalskggksiialpStakkgeiSrIvpslkegahvtttrhdvdyvvTE 120
                      ++i+  k   +i  a+ev   G  +  ++ g++v G+Gg +d v g ++      i+ ++ +ak+g+  +I  + +      t ++ v+ ++T+
       EGE27206.1  35 AMIRGGKVNLAILGAMEVSEHGDLANWMILGKMVKGMGGAMDLVTGVQW-----VIVLMEHVAKDGS-FKIKSNRT---LPLTGQKVVHRIITD 119
                      5666667778999************************************.....9999999999996.45555555...445556666666664 PP

                      TEEEE-TT--HHHHHHHHHTTS- CS
  AcetylCoA_hyd_C 121 yGiadLrgkslreraealikiAh 143
                              + +++    li++A+
       EGE27206.1 120 L-----AVLDITNNGLTLIELAD 137
                      3.....33333444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1233.93
//
Query:       EGE27207.1  [L=52]
Description: hypothetical protein EA1_03638 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 401.45
//
Query:       EGE27208.1  [L=954]
Description: hemoglobin utilization protein MhuA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-24   86.0  19.9    5.1e-24   86.0  19.9    2.2  2  TonB_dep_Rec  TonB dependent receptor


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   7.3      0.56     1e+04      36     106 ..     169     287 ..     128     361 .. 0.50
   2 !   86.0  19.9   2.9e-28   5.1e-24      25     469 ..     372     952 ..     346     953 .. 0.57

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.56
                   E.........................EEEEEEEEEECCCEECCC....EEECECCEEEEE.....EEEEEE..EEEEEEEEEEEEEEEEEEEEEEEE CS
  TonB_dep_Rec  36 r.........................gylgtnplyygdnysetd....nkrlrlgydydl.....ddnlsw..klslraglnYsstdgdsdynnsgl 96 
                   +                         + + ++           +     k+l+    +d      + + +w  ++s++a ++Ys+ d +++y+ +g 
    EGE27208.1 169 NkgsfngkggintltgsanfrtlnadDVIKDDK----------NfgfiAKGLTGKNATDKnfmlaAGGRGWldNGSISALYAYSHKDISQNYKVGGG 255
                   033333333333222111111111111111111..........111221111111111111233344445667778888888888888888888877 PP

                   EE......................EEEEEEEE CS
  TonB_dep_Rec  97 gg......................grsynrdn 106
                   g+                        +yn  +
    EGE27208.1 256 GThignvgddlllskqkqvfakehALTYNEAS 287
                   77544443333333333333333333333333 PP

  == domain 2  score: 86.0 bits;  conditional E-value: 2.9e-28
                   ETTTTEEEEEEE.EEEEEEEEEECCC..EECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE....EEEEEEEE..CEEE.. CS
  TonB_dep_Rec  25 tdggdlgsalsr.gylgtnplyygdn..ysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgg....grsynrdn..dyyg.. 110
                   +d++d g++l+  ++          +   ++ +n++++l++ y+ ++      +l++ ++++   g ++y+ +++ +      ++ ++n  + ++  
    EGE27208.1 372 NDTSDVGLQLRKmDT----------TigSRRISNDNYQLDAAYNPNEI--I--DLKVLAAHN--VGVQKYPKGSTFTgwklDKDFETKNtaNLFDln 452
                   333333333322211..........12233455778888888887777..4..444422222..223334444333333332222222222444422 PP

                   EEEEEEEEEEEEEEEEEE....EEEEEEEEEEE......EEE....EECCBEESCCTC...........CSEEEEEEEEEEEEEEEEEEEEETTEEE CS
  TonB_dep_Rec 111 lgnvlaaeldlngdlwfG....snladgldyrk......lsd....dgydaydplnps...........gdasdsvdrdsyglyaqdnikltdrltl 182
                   ++++++++ +++ + ++G    +n+++   + +      ++d     gyda+++ + +           +++s++++++s   y++ +++  d+++l
    EGE27208.1 453 NTHTFNLPKQMDLTTTVGlnilHNEYSKNRFPDelglfyTNDllcgGGYDACGGRFQGtsstlpkksviVQPSGKQRFHSI--YLDTSLQK-DKYQL 546
                   233333333334444477655544444444442222221233666656666666666677778888877777777777777..********.***** PP

                   EEEEEEEEETTC..................SSSS......................EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTT CS
  TonB_dep_Rec 183 tlGlRydhysvf..................gkdlrag...................afsrsgsafsPsvglryrptddlslrasysrgfraPslgel 242
                   + ++   +y+++                        +                   + s + +a + sv l+ +   +++ ++s++r+ r+P+++e+
    EGE27208.1 547 DYSVNASQYRFSgehasyyssqkefqdkfgE-----DsqiykqhcspscdvyeplvTTSGKKHAINHSVTLSAKYDTGFMPFVSFARTHRMPNIQEM 638
                   *****99999996655555554444433330.....1433344444444444455545555588899998774457999****************** PP

                   CEEEECCCCCEEEEC.STT---EEEEEEEEEEE......EEE.TTEEEEEEEEEEEEEEEEEEESSSSCSTTTCS.....EEEEEEEE......... CS
  TonB_dep_Rec 243 yaggsngaggalsng.npdLkPEtsknyelGlk......ldd.drlnltlayFridiknfittdpdgpslgglgd.....fqyqNvgk......... 317
                   +++      +++  g n+ LkPE +++y lG++      l+d d l l++ +++++i+n+i +++    ++ +                        
    EGE27208.1 639 FFS------QIGDVGvNTALKPEQANTYQLGFNvfkrnlLTDnDTLGLKVVGYQSRINNYIHNVYGKWYDTKNPPswvtsG------Alkgdtiqhr 723
                   **3......3333334788**************98888744448888******************9987776664544440......3444466666 PP

                   .....EEEEEEEEEEEEEEETTEE.EEEEEEEEEE...........EEECEC......EEECTTTTSSTT...EESEEEE..EEEEEECSEEEEEEE CS
  TonB_dep_Rec 318 .....arikGvElelsyrltpgWg.lglsgggytY...........ydagdd......sdaddggnplpn...vPkhtan..lgltYkfpaggWgag 386
                        +  +G+Ele++y+     g +   +++++Y           +da  +      +d+ ++g+ l+    +Pk++++  lg++      g++++
    EGE27208.1 724 nwqmpVHKQGLELEINYD----AGrY---FTNLSYarqktdqptnySDASESprnsskEDQLTQGYGLSKvsmLPKDYGRfeLGVR------GFDDK 807
                   666668*******99988....4422...223555334333332223332223334444444444444446667999999555766......35555 PP

                   E.SEEEEEEECCSS.....EEEEECE...CCEE.............EE--EEE......EEEEEEEEESSSEEEEEEEESTTE.........TCSCE CS
  TonB_dep_Rec 387 l.llagarYvavgg.....rrygdaa...ntfr.............rvpgYtl......ldlslgYklpknltlslgvnNLfd.........kryya 446
                   l  ++++rY+++++      ry d++   nt +                   l      +d++++Y + k+l ++l v+N fd         ++ +a
    EGE27208.1 808 LtIGSAVRYYGQSPratiePRYIDGThggNTSHsddkgahvikqieM-----LkrqplvHDFYVAYEPIKDLVMRLDVQNAFDklyidpldaNNDAA 899
                   54456889955555333333333555544444475444444555552.....05555535******888*************977777777633555 PP

                   EESTT..............................TTTCCEB--SEEEEEEEE CS
  TonB_dep_Rec 447 ssgyy..............................glggypgpgRtfrlglry 469
                   +++yy                              +  +  + gR++ ++++y
    EGE27208.1 900 TQRYYhsyyndadegapcaagqlckpdakyggttrSVLTNFAKGRSLLFSMTY 952
                   55555222244555555555555555554444433222222446666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 5823.72
//
Query:       EGE27209.1  [L=496]
Description: thiamine biosynthesis protein ThiI [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-69  231.1   0.3    1.4e-68  230.4   0.3    1.3  1  ThiI           Thiamine biosynthesis protein (ThiI)
    1.6e-23   83.4   0.2    3.1e-23   82.4   0.2    1.5  1  THUMP          THUMP domain
    1.4e-05   24.7   0.4      0.024   14.2   0.0    2.8  2  QueC           Queuosine biosynthesis protein QueC
    0.00015   22.3   0.1    0.00082   19.9   0.0    2.3  2  Rhodanese      Rhodanese-like domain
     0.0051   15.7   0.3      0.025   13.4   0.0    2.2  2  tRNA_Me_trans  tRNA methyl transferase


Domain annotation for each model (and alignments):
>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.4   0.3   3.8e-72   1.4e-68       2     197 .]     186     379 ..     185     379 .. 0.99

  Alignments for each domain:
  == domain 1  score: 230.4 bits;  conditional E-value: 3.8e-72
        ThiI   2 tqgkvlaLlSgGiDSpVaaylllkRGcrvvlvhlknepgtseeaiekveklaellaeyqtslevklvvvdfkevlkeilekvkekltivllkrkmlriA 100
                 tq++vl+L+SgG+DS Va+++ ++RG rv+++++  ++g ++++ ++ +++ +l+++y+ s++v +++vdf++v+ eil+ ++++ + v+lkr+m+++A
  EGE27209.1 186 TQEDVLSLISGGFDSSVASHMFMRRGSRVHYCFF--NLGGQAHELGVKQMAYHLWSRYSLSHKVWFITVDFEPVVAEILKTIDDGHMGVVLKRMMVKAA 282
                 89********************************..7************************************************************** PP

        ThiI 101 ekvaeeegakalvtGesLgqVaSqtleNlrvisavvnllilrPLigldKeeiiklAkeigtyeisiekedkCsvlakhPttkakleevekaeeklkl 197
                 +++a++ +++alvtGe++gqVaSqtl+Nl++i+a++ +lilrPLi+ dKe+iik+A +igt +i+  ++++C+v++k+Pt+ka ++++ ++e ++++
  EGE27209.1 283 SQIAQQIKIQALVTGEAMGQVASQTLTNLNAIDAASSTLILRPLITSDKEDIIKMAEKIGTANIAKSMPEYCGVISKSPTVKALKSKILEQEANFNF 379
                 ******************************************************************************************9998876 PP

>> THUMP  THUMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.2   8.8e-27   3.1e-23      23     140 ..      60     171 ..      39     173 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 8.8e-27
                 EEEEECTEEEEEETHHHHHHHHHTSTTECEEEEEEEEEESSHHHHHHHHHHHHHHHHHHCT-EEEEEEEESSSTSSSHHHHHHHHHHHHHHCCTT.-EE CS
       THUMP  23 rivvelkgekpeedeellkealekargiqrvipvcevceadledileaakeivkkkfeeeketFaVrvkrrgkhfeftsreinrevGkaivektg.lkV 120
                  i v+++ e    ++ l+ ++l+++ gi++++ v e ++++l di+e ++   k+k++++  +F+Vrvkrrgk+ ef+s++  r++G+ +++++  ++V
  EGE27209.1  60 FIEVRSSDE----KKLLIRDTLQRISGIHHFLEVDEKPYHNLHDIFEHTYLEYKDKLINK--SFCVRVKRRGKT-EFNSMDAMRYIGGGLNQSIDsASV 151
                 455555555....789999****************************************9..************.************************ PP

                 -SSS-SEEEEEEEETTEEEE CS
       THUMP 121 dlenPdivvrveiikdkayi 140
                 +l+nPdi++++ei+ d+++i
  EGE27209.1 152 KLKNPDITIHIEIDHDHMMI 171
                 *****************998 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.6e-06     0.024       3      42 ..     191     231 ..     189     259 .. 0.80
   2 !    7.6   0.2   0.00065       2.3     148     182 ..     316     351 ..     276     361 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.6e-06
                 EEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-T.TSHHHH CS
        QueC   3 vvllSGGlDSttvlalakkegkevealtfdYgqr.hkkele 42 
                 + l+SGG DS+++  + +++g +v+   f+ g + h+  ++
  EGE27209.1 191 LSLISGGFDSSVASHMFMRRGSRVHYCFFNLGGQaHELGVK 231
                 789***************************98775776654 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00065
                 HTS--EEE-TTTT--HHHHHHHHHHTT.HHHHH-B- CS
        QueC 148 edkkieieaPlidlsKaeivklgkelg.vpleetls 182
                  +++  i  Pli+ +K++i+k+++++g +++ +++ 
  EGE27209.1 316 AASSTLILRPLITSDKEDIIKMAEKIGtANIAKSMP 351
                 344577999*****************9766666665 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.63   2.2e+03      24      36 ..     107     119 ..      55     200 .. 0.66
   2 !   19.9   0.0   2.3e-07   0.00082       3      97 ..     406     487 ..     404     490 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.63
   Rhodanese  24 eYekghIpgAvnv 36 
                 eY++  I+ + +v
  EGE27209.1 107 EYKDKLINKSFCV 119
                 3444555555555 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 2.3e-07
   Rhodanese   3 kelkellekgkvallDvRppeeYekg..hIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvl 97 
                 +e+++++ +++v +lD+R p+e ++    +  Av               p+ +l+ e+ +l  d+ kt  +yc+ g  ++  aa+l + G++nv++ 
  EGE27209.1 406 AEVVQHITSQQV-VLDIRMPDEVDDKplKVDAAVIT------------LPFYKLLSEFDQL--DPTKTYLLYCQQGVMSRLQAAQLLAKGHHNVKIF 487
                 689999988875.*****999987661145555555............9***********9..***************55555555559*999*986 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   6.8e-06     0.025       2      41 ..     189     228 ..     188     242 .. 0.85
   2 ?   -0.7   0.1      0.14   4.9e+02     155     215 ..     313     373 ..     278     380 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.8e-06
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeqgyevigvflklweeedee 41 
                     v+ ++SgG DSsva +++ ++g  v  +f++l  +++e 
     EGE27209.1 189 DVLSLISGGFDSSVASHMFMRRGSRVHYCFFNLGGQAHEL 228
                    58899***********************999887776655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.14
  tRNA_Me_trans 155 qlskealekllfPlgeltKeevrkiAkeaglavaekkdSqgiCfigkrkfkdflkkyleek 215
                    +++ +  + +l Pl +  Ke++ k+A+++g a+  k   +    i+k+ + + lk+++ e+
     EGE27209.1 313 AIDAASSTLILRPLITSDKEDIIKMAEKIGTANIAKSMPEYCGVISKSPTVKALKSKILEQ 373
                    4555555556779999999999999999999877665555444566666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3417.03
//
Query:       EGE27210.1  [L=421]
Description: NnrS family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-92  311.4  55.4    1.1e-92  311.2  55.4    1.0  1  NnrS           NnrS protein


Domain annotation for each model (and alignments):
>> NnrS  NnrS protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.2  55.4   6.4e-97   1.1e-92       1     366 []      17     415 ..      17     415 .. 0.94

  Alignments for each domain:
  == domain 1  score: 311.2 bits;  conditional E-value: 6.4e-97
        NnrS   1 allslgFRpfFllaalfaalavllWllvlaga.a....vppllwHaheMlfGfalavvaGFLlTavpnWtgtppvkgrplallvllwlaarlallllg. 93 
                 ++l+lgFR+fF++ a+fa++++llWl++l+g  +    v+p++wH+heM+fG+alav+aGFLlTav++Wt++p++ g++l +++++w + r++++ l  
  EGE27210.1  17 PILNLGFRIFFVGSAVFAVISMLLWLVILQGFaPfqgvVTPFYWHGHEMVFGYALAVIAGFLLTAVKTWTNQPMPYGWHLGAIFGAWAVSRFIWFGLHv 115
                 5899**********************99999974779999*****************************************************444435 PP

        NnrS  94 l......alaavldlafllllalllarellaakqwrnlavlalllllalanllfhlallglatalasaglrlalllvlllillvggRvipfftanal.. 184
                         +a+v+d++f++++a+++++ ++a++q+r+++++  llll l +++f++++l +++++++++l++al+lv+ +++++++Rv+pff+++++  
  EGE27210.1 116 TpsialfMAAFVFDMIFWGMTAFAVIKAVWAVRQKRQIGIITKLLLLGLTQVAFYVGVLINHHNTQQIALYFALYLVIGVVFTIARRVLPFFITKGIsv 214
                 1555554599*************************************************88889999******************************** PP

        NnrS 185 .........elkarpsprldrlalallllalllell....lllaaalalaaallqlvrlarwrlwrtlrepllwvLhlgylwlplgllllgla...... 264
                          +l++++s  ldrl l+ ++ +++++l+    +++++ +al++ +++l+rl +w++++++++pllw+L ++++ + ++l+++ l       
  EGE27210.1 215 nhdgtpngmQLEQKNSDLLDRLNLFGFFGFIIFDLFikqpMIAGV-CALVCLMANLARLKNWYHHAIWQKPLLWSLIIAFFGMTISLAMFVLYpiatql 312
                 ************************************888666666.*****************************************999888777855 PP

        NnrS 265 alga..glvlesaalHaltvGalglmilavmtrvslgHtgrpl.vapklvvlaflllllaallRvlaplllpaalllllllaallWilafalfllryap 360
                 +  +  ++  ++++lH l+v ++glm++a+m+rvslgHtgr++ ++p +v l+f+l++l  ++Rv++pl++++++++l+ll+++lWi+ f++f+l y+ 
  EGE27210.1 313 N--WfsSVNIHTLGLHGLAVFGIGLMTIAMMARVSLGHTGRNIhQPPATVSLMFMLMILCGIFRVVLPLFFNDSYMPLMLLSQVLWIASFVIFCLCYVG 409
                 4..34488999********************************999***************************************************** PP

        NnrS 361 illrpR 366
                 il++pR
  EGE27210.1 410 ILVKPR 415
                 *****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1146  (0.0639188); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2837.85
//
Query:       EGE27211.1  [L=258]
Description: Crp/Fnr family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-12   45.9   0.2    6.9e-12   45.2   0.2    1.4  1  HTH_Crp_2     Crp-like helix-turn-helix domain
    7.8e-06   25.9   0.0    5.3e-05   23.2   0.0    2.1  2  cNMP_binding  Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
      0.035   14.0   0.7      0.099   12.6   0.4    1.9  2  MarR          MarR family
       0.04   13.8   0.0      0.075   12.9   0.0    1.4  1  MarR_2        MarR family
       0.11   12.6   4.5        4.4    7.4   0.1    2.3  2  DUF2661       Protein of unknown function (DUF2661)
       0.15   12.6   1.2       0.28   11.8   0.6    1.8  1  Phage_rep_O   Bacteriophage replication protein O


Domain annotation for each model (and alignments):
>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.2   2.3e-15   6.9e-12       2      67 ..     189     254 ..     188     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 2.3e-15
                 HHHHHHHHHHCTTTC.EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET.EEEEES-HHHHHH CS
   HTH_Crp_2   2 RlArfLlrlaeragg.eielpltqeelAsmlGltretvsrilseLkreglis.rg.rririldleaLra 67 
                 ++A +Ll +a+   + +ie++++q+ lAs+l ++ et+sr+l+ L ++++is +g +  +il  e L++
  EGE27211.1 189 KVAYYLLCHADN--NsKIEISMSQKNLASLLSIRAETLSRTLRSLINQQIISvNGvQ-YTILKSEHLEQ 254
                 89****977665..347***********************************55655.*******9997 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.8e-08   5.3e-05       3      46 ..      38      81 ..      36      97 .. 0.88
   2 ?   -0.3   0.0      0.39   1.2e+03      58      86 ..     123     151 ..     110     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.8e-08
                  EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE- CS
  cNMP_binding  3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlg 46
                  ++++g+ i+ q  ++++ly++l+G +  yr++++g+e++++++ 
    EGE27211.1 38 YYPKGSLIYLQYAKVRYLYFLLEGAIHCYRQQPNGQESLINRFD 81
                  79***********************************9999874 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.39
                   HTS--SSEEEESSTEEEEEEEHHHHHHHH CS
  cNMP_binding  58 tgeprtatvvAltdsellalprddflell 86 
                    +++++ t+ A  +s ++ lp  ++++ +
    EGE27211.1 123 KNSCHQLTAKASQNSYVAILPIHEIKKTF 151
                   567799999**999999999988777665 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.5   7.5e+03      12      32 ..      65      85 ..      64      87 .. 0.73
   2 ?   12.6   0.4   3.3e-05     0.099      17      48 ..     207     238 ..     204     240 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.5
                HHHSTTEEHHHHHHHHTS-HH CS
        MarR 12 lyeqgplsvseLakklgvsks 32
                +y+q+p  +  L +++ ++k+
  EGE27211.1 65 CYRQQPNGQESLINRFDTNKT 85
                677888888888888877776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.3e-05
                 TEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  17 plsvseLakklgvskstvtrvldrLekkGlie 48 
                 ++s++ La+ l++   t++r+l+ L+ +  i+
  EGE27211.1 207 SMSQKNLASLLSIRAETLSRTLRSLINQQIIS 238
                 799**********************9998886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-05     0.075       3      49 ..     183     235 ..     181     241 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
                 --HHHHHHHHHHHCTTTS......EEEHHHHHHHHTSSHHHHHHHHHHHHHTT CS
      MarR_2   3 ltpaqarvLaaLgrrpgr......dltvgelarrlglsksavsrilkrLvaaG 49 
                 l+ aqa v ++L ++ ++       ++++ la  l +   ++sr+l+ L  + 
  EGE27211.1 183 LKTAQAKVAYYLLCHADNnskieiSMSQKNLASLLSIRAETLSRTLRSLINQQ 235
                 6789******************9999**********************99876 PP

>> DUF2661  Protein of unknown function (DUF2661)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.0    0.0021       6.2      27     106 ..      79     156 ..      75     159 .. 0.80
   2 ?    7.4   0.1    0.0015       4.4       2      95 ..     157     251 ..     156     257 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0021
     DUF2661  27 eynakrrkcivlyyvend.dslrlpvnkynidlidykkvypedyknsldvlmkkaqkidyiklsillkghlldvaksdlll 106
                 ++++++ + + + +++++  +l++ +++  +d +   + y    kns + l+ ka +  y+    +l  h ++++ ++l l
  EGE27211.1  79 RFDTNKTHIHQVQMINESlPNLKVDKCDEKQDEMLAYNQYNSFGKNSCHQLTAKASQNSYVA---ILPIHEIKKTFNNLSL 156
                 677778888888888765379******99988666667899*****************9984...5777888888887765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0015
     DUF2661   2 kllyvwyhdsvfvpdsleypflsnieynakrrkcivlyyvenddslrlpvnkynidlidykkvypedyknsldvlmkk.aqkidyiklsillkgh 95 
                 + ++ wy ++++   s ++ +++ +  ++ + k   +   + d++ ++  +  +++l     +  e +  +l +l+++    ++ ++ +il   h
  EGE27211.1 157 ATIFTWYAEQMYEQISTQFLLYDLLSLKTAQAKVAYYLLCHADNNSKIEISMSQKNLASLLSIRAETLSRTLRSLINQqIISVNGVQYTILKSEH 251
                 679*********9999999999999998888887766667788888888888889999999999****99**99987613456666666666665 PP

>> Phage_rep_O  Bacteriophage replication protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6   9.5e-05      0.28      26      88 ..     184     246 ..     158     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
  Phage_rep_O  26 tkrqlkillavirktYgfkkksdwisnsqlveltgisrtkvskalkeLirekviikegrkvgv 88 
                  ++ q+k++  ++      +k + ++s+++l+ l  i  + +s++l +Li++++i+ +g ++ +
   EGE27211.1 184 KTAQAKVAYYLLCHADNNSKIEISMSQKNLASLLSIRAETLSRTLRSLINQQIISVNGVQYTI 246
                  5555555555555555556777789999******************************88776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1059  (0.0590663); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2002.41
//
Query:       EGE27212.1  [L=211]
Description: carbonic anhydrase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-51  172.2   0.1    1.1e-50  171.9   0.1    1.1  1  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.9   0.1   6.4e-55   1.1e-50       1     155 [.      38     188 ..      38     189 .. 0.93

  Alignments for each domain:
  == domain 1  score: 171.9 bits;  conditional E-value: 6.4e-55
                 EEEEEETTTTS-HHHHTTS-TTSEEEEEETTG---TT-HHHHHHHHHHHHTS--SEEEEEEETT-HHHHHHHSHHCCSTTSSHHHHHHHHHHHHHHHCH CS
      Pro_CA   1 alvigCsDSRvppelitdagpGdlFvvrnvgnlvppadssvlaaleyAvevlkvkhivVlGHskCGavkaalkaekseeeagaidkwlekirealekve 99 
                 +l+igCsDSRvp++ ++++ pG+lFv+rnv+n+v+++d ++l++l++Av+vl+v+hi+V+GH++CG+vkaal++    +e g id+wl++++ ++ + +
  EGE27212.1  38 YLWIGCSDSRVPANEVVGVMPGELFVHRNVANMVVSTDMNLLSVLQFAVDVLRVEHIIVCGHYGCGGVKAALSQ----QEYGLIDNWLRPLKGMRYQYR 132
                 69*******************************************************************99974....3479***************99 PP

                 HHHHTTSSHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTTS.-EEEEEEEETTTTE CS
      Pro_CA 100 eelesekekearerlleeenVaeqlenLlekpvvreavekgk.lkvhGlvydletGe 155
                 e+ e  ++ke+  +ll++ nV++q++n++++++v++a+ +g+ l+vhG++yd+++G 
  EGE27212.1 133 EAFEGLTDKEE-LDLLCQINVKRQVTNVCHTTIVQNAWYQGRqLSVHGWIYDMNSGL 188
                 98777765555.5666************************999***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1664.83
//
Query:       EGE27213.1  [L=1251]
Description: nitrate reductase alpha subunit NarG [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.7e-162  540.2   0.1     5e-162  539.8   0.1    1.2  1  Molybdopterin    Molybdopterin oxidoreductase
    1.8e-22   79.5   0.0    4.7e-22   78.1   0.0    1.8  1  Molydop_binding  Molydopterin dinucleotide binding domain
    6.6e-16   58.5   7.0    1.7e-15   57.2   7.0    1.8  1  Nitr_red_alph_N  Respiratory nitrate reductase alpha N-termin
     0.0021   18.0   0.1     0.0047   16.9   0.1    1.7  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
  ------ inclusion threshold ------
      0.028   14.2   0.0      0.082   12.7   0.0    1.8  1  PUA_3            PUA-like domain
          9    7.2   7.8       0.26   12.2   0.6    2.2  2  SGP              Sulphur globule protein


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  539.8   0.1  1.7e-165    5e-162       1     432 []     108     832 ..     108     832 .. 0.96

  Alignments for each domain:
  == domain 1  score: 539.8 bits;  conditional E-value: 1.7e-165
                    B--S-EEEC..................................TTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHH CS
  Molybdopterin   1 RlkyPmvRk..................................qargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslasl 62 
                    RlkyP vRk                                  ++rg G+Fvr+sW+e  e+iaa+++yt k+ gpdr+ gfs++p+msm s+as+
     EGE27213.1 108 RLKYPKVRKpllklwreakakhtdpvlawasivenptksaeykSKRGLGGFVRSSWQECAEIIAAANVYTAKTFGPDRIIGFSPIPAMSMLSYASG 203
                    9*********************************************************************************************** PP

                    HHHHHHTT-EEE-BEECCGGGTTHHHHCHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-HCGGGC CS
  Molybdopterin  63 kkllsllggknlsfydwyadlppasaqqtigsdsrsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryaellkfa 158
                    +++lsl+gg +lsfydwy+dlppas+   ++++++++ es     d++nsd+ii+wGsNv+++r+++ a++  ++++k++k+++i+p+yae++k +
     EGE27213.1 204 SRYLSLIGGACLSFYDWYCDLPPASP--MVWGEQTDVAESA----DWYNSDYIIAWGSNVPQTRTPD-AHFFTEVRYKGTKTVAITPDYAEIAKLC 292
                    **************************..9**********99....**********************.**************************** PP

                    SEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHHHHHEECHHHCCCCCCCEECCS.......................................... CS
  Molybdopterin 159 dewlaikpgtdaalalamghvilqelkvdkeflrkytygkeetdmpllvtleee.......................................... 212
                    d+wl +k+gtdaala a++hvi++e++   ++ ++++y+k++td p+lv+lee+                                          
     EGE27213.1 293 DLWLNPKQGTDAALAQAFCHVIIKEFYLKSQSDYFQDYAKRYTDLPMLVVLEEKddkfkagrflrasdlidnlgqennpewktiamnqngelvspy 388
                    ************************************************************************************************ PP

                    ................................................................................................ CS
  Molybdopterin 213 ................................................................................................ 212
                                                                                                                    
     EGE27213.1 389 gsigyrwgetgrwnlenkegqhngdvdltlslkgsgetasvgldyfggdehpyftaaagdaiqyknipchtislangqtakvatvfdlmvanlgvd 484
                    ************************************************************************************************ PP

                    ...........................HHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESS CS
  Molybdopterin 213 ...........................tgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnG 281
                                               tg+++e v++iare+a+na+kt+gksm+i+Gag+nh++++d++yr+vin+++l+g++g++gGgwah++G
     EGE27213.1 485 nghggqnvtddyndaniagtpawqekiTGVSREKVIQIAREFAENAHKTQGKSMVIIGAGMNHWYHLDMNYRGVINMLMLCGCIGKSGGGWAHYVG 580
                    ************************************************************************************************ PP

                    ...........................................................CTTHHHCHHHHTCCTTCCCCCCCTT............ CS
  Molybdopterin 282 ...........................................................qlilagaaekvgalpvllsvkslke............ 306
                                                                               + ++ +++ k+ + ++l+s+++l++            
     EGE27213.1 581 qeklrpqsgwapvafgldwhrpprhmngtsffynhssqwrhetvsahellsshanksqfPEHMLDYNIKAERAGWLPSAPQLNQnpltiapqakak 676
                    ***********************************************************5566666666666666666666666666666666666 PP

                    ..............HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH....................HHHHSTTSCCCHCHHHCSSEE CS
  Molybdopterin 307 ..............ekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgn...................npevdhadenevekalekldlv 369
                                  ++++faaeqp+n +nfprn f++rsnll+ssgk+++y+l++                   ++e+d  ++  +    +k dlv
     EGE27213.1 677 gmsvqdyvveslhnGSLRFAAEQPDNPQNFPRNMFIWRSNLLGSSGKGHEYMLKYllgtkngllgdetvqtgfkPNEIDFVENAPT----GKIDLV 768
                    66666666666666****************************************************99977777777777777777....7***** PP

                    EEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEE.EEESSS-STT-BEHHHHHHHHHHH CS
  Molybdopterin 370 vvldgrltstalyaDiiLPaatwyEkedlytndegrfqh.lkqavsppgeaksdwkIlkaLakk 432
                     +ld+r++st+ly+Di+LP+atwyEked++t+d+++f+h + +a++p++eak+dw+I+k +ak+
     EGE27213.1 769 TTLDFRMSSTCLYSDIVLPTATWYEKEDINTSDMHPFIHpFTAATDPAWEAKTDWEIYKYIAKA 832
                    **************************************************************95 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   1.6e-25   4.7e-22       1     107 [.    1087    1202 ..    1087    1206 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1.6e-25
                       EEEEEE-BTTBSTTTT.TCGCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC......... CS
  Molydop_binding    1 lrLitgrsldqlhsqt.rtrpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwwe......... 82  
                       l + t+++++ +hs++ ++  +l l++ +p  v+i++ dA++ Gi+d+d++ev++++G++++ra+v++rv++G+  m++++++         
       EGE27213.1 1087 LNFLTPHQKWGIHSTYsENLLMLTLSRGGP-IVWISEIDAQKAGIEDNDWIEVFNANGAITARAVVSQRVKEGMTMMYHAQEKlvsipgsen 1177
                       5689************99999999999999.************************************************************* PP

                       .....S-GHCTS--SCSTTT--CST CS
  Molydop_binding   83 agekggnaNaltddatdplsgtpef 107 
                       +g +gg  N++t+  ++p++ +  +
       EGE27213.1 1178 SGTRGGIHNSVTRTILKPTHMIGGY 1202
                       *****************99988776 PP

>> Nitr_red_alph_N  Respiratory nitrate reductase alpha N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   7.0   5.5e-19   1.7e-15       1      38 []       3      40 ..       3      40 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 5.5e-19
  Nitr_red_alph_N  1 hlldrlrffrkkkekfadgHgetteedReWEdaYRrRW 38
                     hlld+lrff++k+ +fa+ Hget++e+ReWE++YR RW
       EGE27213.1  3 HLLDQLRFFKRKQGEFANSHGETRHENREWENSYRARW 40
                     9************************************* PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.6e-06    0.0047       4      54 ..      46     104 ..      43     105 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
                     EEEE-S.SBTT--EEEEEEETTEEE.......EEEE-TTSTTTTT---HHHHTCHHCCC CS
  Molybdop_Fe4S4   4 vktaCp.yCgvgCglevhvkdgkiv.......kvegdpdhpvnegrlCvKGrtllervy 54 
                     v+++   +C+ +C+ +++vk+g ++       + ++ pd p  e r C++G++   ++y
      EGE27213.1  46 VRSTHGvNCTGSCSWKIYVKNGLVTwetqqtdYPRTRPDLPNHEPRGCPRGASYSWYMY 104
                     55555559*****************5555555555556666666********9988887 PP

>> PUA_3  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-05     0.082      11      53 ..    1111    1153 ..    1110    1156 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
       PUA_3   11 lrqGhPwvfsneiasvegeledGdvVdvfsekgkflGtGyynp 53  
                  l +G P v   ei+  +  +ed d+++vf+++g   +++++++
  EGE27213.1 1111 LSRGGPIVWISEIDAQKAGIEDNDWIEVFNANGAITARAVVSQ 1153
                  56899**********************************9976 PP

>> SGP  Sulphur globule protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   8.7e-05      0.26       5      57 ..     387     441 ..     384     468 .. 0.81
   2 ?   -4.6   1.5         6   1.8e+04      47      72 ..    1201    1212 ..    1195    1216 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
         SGP   5 pwge.gkgygngagdglgdlfGdgsgdfnmnmsgrgrgrgygrGygry.gygapy 57 
                 p+g+ g ++g++  ++l +  G+ +gd+++++s +g+g++   G +++ g ++py
  EGE27213.1 387 PYGSiGYRWGETGRWNLENKEGQHNGDVDLTLSLKGSGETASVGLDYFgGDEHPY 441
                 777657899**9999**************************99999763333443 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 6
         SGP   47 GygrygygapygYgypygygaPygpY 72  
                  Gy +++yg              y  Y
  EGE27213.1 1201 GYAQFSYG------------FNY--Y 1212
                  33333333............233..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.42
# Mc/sec: 8909.48
//
Query:       EGE27214.1  [L=512]
Description: nitrate reductase beta subunit NarH [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-38  130.0   5.5    6.3e-38  128.9   5.5    1.6  1  Fer4_11         4Fe-4S dicluster domain
    1.9e-29  101.1   0.1    4.2e-29  100.1   0.1    1.6  1  Nitr_red_bet_C  Respiratory nitrate reductase beta C-terminal
    1.1e-08   35.0  15.9    3.9e-06   26.9   3.8    3.3  3  Fer4_10         4Fe-4S dicluster domain
    1.4e-07   31.9  16.3    0.00013   22.4   5.2    3.6  3  Fer4_7          4Fe-4S dicluster domain
    1.4e-05   24.9  18.8     0.0056   16.7   0.2    3.8  4  Fer4_6          4Fe-4S binding domain
    0.00015   21.8  17.2       0.19   11.9   0.2    3.3  2  Fer4_9          4Fe-4S dicluster domain
      0.007   16.1  24.0      0.016   15.0   2.0    4.8  4  Fer4            4Fe-4S binding domain
     0.0071   16.8  19.4       0.22   12.1   0.9    3.9  3  Fer4_4          4Fe-4S binding domain
  ------ inclusion threshold ------
      0.013   15.5  23.1      0.014   15.5   1.9    4.1  3  Fer4_2          4Fe-4S binding domain
      0.017   15.7   6.9       0.05   14.1   0.1    3.4  3  Fer4_13         4Fe-4S single cluster domain of Ferredoxin I
      0.039   14.7   6.8        1.6    9.5   0.1    3.3  3  Fer4_15         4Fe-4S single cluster domain
      0.046   13.9  21.6       0.07   13.3   4.1    3.1  3  Fer4_21         4Fe-4S dicluster domain
      0.056   14.0  14.7        1.2    9.7   0.1    3.7  3  Fer4_17         4Fe-4S dicluster domain
       0.23   11.9   0.2       0.23   11.9   0.2    3.7  3  Fer4_8          4Fe-4S dicluster domain
        0.3    9.3   0.1       0.46    8.7   0.1    1.1  1  Fusion_gly      Fusion glycoprotein F0
        6.9    7.7  16.8          5    8.1   1.3    3.7  3  Fer4_16         4Fe-4S double cluster binding domain


Domain annotation for each model (and alignments):
>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   5.5   5.6e-41   6.3e-38       2      99 ..     175     271 ..     174     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 5.6e-41
     Fer4_11   2 ewlflpeqCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykivrkneetgkvekCdmcldrveaGllpacvescptgalnfgd 99 
                 ++++lp+ C+hCl+p Cvas+ps+ai+k+ee+G+Vl+d+++++ ++r+++++cPyk++++n+++gk+ekC +c++r+eaG++++c+e+c+++++++g+
  EGE27214.1 175 FMMYLPRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCR-GWRMCISGCPYKKIYYNWKSGKSEKCIFCYPRIEAGMPTICSETCVGRIRYLGV 271
                 699***************************************9.***************************************************996 PP

>> Nitr_red_bet_C  Respiratory nitrate reductase beta C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.1   3.7e-32   4.2e-29       1      80 [.     358     435 ..     358     436 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 3.7e-32
  Nitr_red_bet_C   1 LsPvvsaveagkldeeadgllpaveslRiPveYLAnLltAGdeepvekaLkrllamRaymRaknvegeadeavleevglt 80 
                     LsP+++a+eagk+ ++ dgl+p+v+slRiP++YLAn+ltAGdeepv+ aLkrllamR+y+R + ve++ +++vl++vgl+
      EGE27214.1 358 LSPIQNAAEAGKV-GM-DGLIPDVDSLRIPLKYLANMLTAGDEEPVRLALKRLLAMRSYKRLQLVEKQDAQEVLDAVGLS 435
                     9**********99.66.9************************************************************97 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2   5.2e-05     0.058       2      23 ..       9      28 ..       8      59 .. 0.75
   2 !   26.9   3.8   3.5e-09   3.9e-06       6      56 .]     180     227 ..     175     227 .. 0.94
   3 ?    2.0   0.7       0.2   2.2e+02      39      55 ..     237     262 ..     229     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.2e-05
     Fer4_10  2 vvidddtCirCgkCvkaCPadl 23
                +v++ d+Ci+C +C   C  ++
  EGE27214.1  9 MVLNLDKCIGCHTCSVTC--KN 28
                68999*************..33 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 3.5e-09
     Fer4_10   6 ddtCirCg..kCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +  C +C   +Cv++CP+     ga+++++e++ v ++ +kC g+ +C++ CP
  EGE27214.1 180 PRLCEHCLnpTCVASCPS-----GAIYKREEDGIVLIDQDKCRGWRMCISGCP 227
                 678****9899*******.....*****************************9 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.2
     Fer4_10  39 rkkvekCtgc.........gaCveaC 55 
                 ++k+ekC++c         + C e C
  EGE27214.1 237 SGKSEKCIFCyprieagmpTICSETC 262
                 67899*****7766666555777777 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.3     5e-05     0.056       1      19 [.      15      33 ..      15      64 .. 0.77
   2 !   22.4   5.2   1.2e-07   0.00013       2      50 ..     183     228 ..     182     230 .. 0.89
   3 ?    1.3   0.3      0.46   5.2e+02      34      48 ..     239     262 ..     232     269 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5e-05
      Fer4_7  1 rCigCgaCvaaCpvkaiel 19
                +CigC+ C ++C++ + + 
  EGE27214.1 15 KCIGCHTCSVTCKNVWTSR 33
                7***********9766654 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.2e-07
      Fer4_7   2 CigCg..aCvaaCpvkaieldeeenekgtekveidpekClgCgaCvavCPt 50 
                 C +C    Cva Cp++ai+ +ee   +    v id++kC g ++C++ CP+
  EGE27214.1 183 CEHCLnpTCVASCPSGAIYKREE---D--GIVLIDQDKCRGWRMCISGCPY 228
                 99995559************987...3..5899*****************8 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.46
      Fer4_7  34 dpekClgC.........gaCvavC 48 
                 ++ekC++C         + C ++C
  EGE27214.1 239 KSEKCIFCyprieagmpTICSETC 262
                 679999995555554444588887 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   1.1    0.0013       1.4       7      19 ..      14      26 ..      11      35 .. 0.91
   2 !    9.5   2.4   0.00096       1.1       8      24 .]     182     200 ..     179     200 .. 0.87
   3 !   16.7   0.2     5e-06    0.0056       1      22 [.     208     229 ..     208     232 .. 0.91
   4 ?   -2.7   0.1       6.5   7.3e+03       6      13 ..     240     247 ..     239     248 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0013
      Fer4_6  7 dkCigCgdCvrvC 19
                dkCigC  C + C
  EGE27214.1 14 DKCIGCHTCSVTC 26
                9***********9 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00096
      Fer4_6   8 kCigC.gd.CvrvCPegai 24 
                 +C +C ++ Cv+ CP gai
  EGE27214.1 182 LCEHClNPtCVASCPSGAI 200
                 899**666*********98 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 5e-06
      Fer4_6   1 vveidpdkCigCgdCvrvCPeg 22 
                 +v id+dkC g + C++ CP++
  EGE27214.1 208 IVLIDQDKCRGWRMCISGCPYK 229
                 588*****************85 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 6.5
      Fer4_6   6 pdkCigCg 13 
                  +kCi C+
  EGE27214.1 240 SEKCIFCY 247
                 58999786 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   0.00017      0.19       1      17 [.      15      31 ..       9      57 .. 0.78
   2 !    9.7  11.8   0.00082      0.91       2      49 ..     183     229 ..     182     266 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
      Fer4_9  1 kCtgCgaCveaCpagvv 17
                kC+gC++C   C++  +
  EGE27214.1 15 KCIGCHTCSVTCKNVWT 31
                69999999999976544 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00082
      Fer4_9   2 CtgCga..CveaCpagvvvedaaerkarlraaseeaCigCgaCveaCpkg 49 
                 C  C +  Cv++Cp+g++ +++  +++ ++++   +C g + C+  Cp +
  EGE27214.1 183 CEHCLNptCVASCPSGAIYKREEDGIVLIDQD---KCRGWRMCISGCPYK 229
                 99997566*******************99875...8999999*****986 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.0   1.4e-05     0.016       2      18 ..      10      26 ..       9      28 .. 0.89
   2 !    8.8   0.4    0.0013       1.5      13      24 .]     190     201 ..     190     201 .. 0.92
   3 ?    4.5   0.3      0.03        34       2      20 ..     210     228 ..     209     229 .. 0.88
   4 ?    2.6   0.3      0.12   1.4e+02       6      11 ..     241     246 ..     239     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-05
                EEETTTSSS-THHHHHS CS
        Fer4  2 videekCigCGaCvevC 18
                v + +kCigC +C   C
  EGE27214.1 10 VLNLDKCIGCHTCSVTC 26
                6799**********999 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0013
                 HHHHHSTTTEEE CS
        Fer4  13 aCvevCPvgAIt 24 
                 +Cv  CP gAI+
  EGE27214.1 190 TCVASCPSGAIY 201
                 5**********6 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.03
                 EEETTTSSS-THHHHHSTT CS
        Fer4   2 videekCigCGaCvevCPv 20 
                  id++kC g   C++ CP+
  EGE27214.1 210 LIDQDKCRGWRMCISGCPY 228
                 59*****999999999997 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.12
                 TTSSS- CS
        Fer4   6 ekCigC 11 
                 ekCi+C
  EGE27214.1 241 EKCIFC 246
                 9***** PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   1.5    0.0023       2.6       2      15 ..      14      27 ..      13      37 .. 0.90
   2 ?    4.9   2.8     0.042        47       8      17 .]     189     198 ..     181     198 .. 0.73
   3 !   12.1   0.9   0.00019      0.22       1      16 [.     213     228 ..     213     229 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0023
      Fer4_4  2 erCigCgsCvaaCP 15
                ++CigC  C  +C+
  EGE27214.1 14 DKCIGCHTCSVTCK 27
                99*******99996 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.042
      Fer4_4   8 gsCvaaCPqg 17 
                 + Cva+CP+g
  EGE27214.1 189 PTCVASCPSG 198
                 38******86 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00019
      Fer4_4   1 qerCigCgsCvaaCPq 16 
                 q++C g + C++ CP+
  EGE27214.1 213 QDKCRGWRMCISGCPY 228
                 79*************8 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   1.9   1.2e-05     0.014       3      20 ..       9      26 ..       7      28 .. 0.87
   2 ?    8.1   1.8    0.0027       3.1       5      21 ..     178     196 ..     175     197 .. 0.86
   3 ?    6.3   0.1    0.0099        11       3      22 .]     209     228 ..     207     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-05
      Fer4_2  3 vvvdtdrCigCgaCvsaC 20
                +v + d+CigC +C   C
  EGE27214.1  9 MVLNLDKCIGCHTCSVTC 26
                57899*********8889 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0027
      Fer4_2   5 vdtdrCigCg..aCvsaCP 21 
                 + ++ C +C   +Cv +CP
  EGE27214.1 178 YLPRLCEHCLnpTCVASCP 196
                 66889****889******* PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0099
      Fer4_2   3 vvvdtdrCigCgaCvsaCPa 22 
                 v +d d+C g + C+s CP+
  EGE27214.1 209 VLIDQDKCRGWRMCISGCPY 228
                 789******999******95 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.5e-05      0.05       2      28 ..      12      38 ..      11      54 .. 0.82
   2 ?   -0.3   0.4       1.5   1.6e+03      12      56 ..     191     200 ..     183     210 .. 0.62
   3 ?    3.2   0.1      0.12   1.4e+02       1      17 [.     211     227 ..     211     234 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.5e-05
     Fer4_13  2 DrdtCiacgaCvelaPdvFeeddegga 28
                + d+Ci+c++C  ++ +v    +  ++
  EGE27214.1 12 NLDKCIGCHTCSVTCKNVWTSREGMEY 38
                569***************988876544 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.5
     Fer4_13  12 CvelaPdvFeeddeggasvvaeqptseeekadaeeAadaCPvesI 56 
                 Cv+ +P                                     +I
  EGE27214.1 191 CVASCP-----------------------------------SGAI 200
                 666666...................................4443 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.12
     Fer4_13   1 VDrdtCiacgaCvelaP 17 
                 +D+d+C +   C + +P
  EGE27214.1 211 IDQDKCRGWRMCISGCP 227
                 8***************9 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0015       1.6       3      25 ..      11      33 ..       9      50 .. 0.82
   2 ?   -1.2   0.2       3.1   3.5e+03      56      64 ..     192     200 ..     190     201 .. 0.84
   3 ?    7.6   0.2    0.0056       6.3       1      19 [.     209     227 ..     209     244 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0015
     Fer4_15  3 vDrdaCigcglCvaeapevfeld 25
                ++ d+Cigc  C   +++v +  
  EGE27214.1 11 LNLDKCIGCHTCSVTCKNVWTSR 33
                6789************9987665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.1
     Fer4_15  56 araCPvdAI 64 
                 +++CP +AI
  EGE27214.1 192 VASCPSGAI 200
                 579*****9 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0056
     Fer4_15   1 VvvDrdaCigcglCvaeap 19 
                 V +D+d+C g  +C+  +p
  EGE27214.1 209 VLIDQDKCRGWRMCISGCP 227
                 78************99886 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.1   8.1e-05     0.091       4      20 ..      12      28 ..       9      37 .. 0.81
   2 ?   13.3   4.1   6.2e-05      0.07       9      53 ..     184     228 ..     180     232 .. 0.72
   3 ?   -3.0   1.8       7.5   8.4e+03       7      11 ..     242     246 ..     239     270 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.1e-05
     Fer4_21  4 dedkCigCgkCliaCed 20
                + dkCigC  C ++C++
  EGE27214.1 12 NLDKCIGCHTCSVTCKN 28
                56889999999999985 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 6.2e-05
     Fer4_21   9 igC..gkCliaCedtshqaieidaktvl.kvvedeCvGCnlCssvCPv 53 
                  +C    C+ +C+     ai + ++  +  + +d+C G  +C+s CP 
  EGE27214.1 184 EHClnPTCVASCP---SGAIYKREEDGIvLIDQDKCRGWRMCISGCPY 228
                 4452236******...47886666655505569**************6 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 7.5
     Fer4_21   7 kCigC 11 
                 kCi C
  EGE27214.1 242 KCIFC 246
                 44444 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0011       1.2      44      57 ..      14      27 ..       3      62 .. 0.78
   2 ?    8.5   0.5    0.0027         3       2      24 ..     183     207 ..     182     211 .. 0.84
   3 ?    1.5   3.9      0.39   4.3e+02       1      20 [.     215     234 ..     215     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
     Fer4_17 44 slCieCgeCerkCP 57
                ++Ci+C+ C+  C 
  EGE27214.1 14 DKCIGCHTCSVTCK 27
                66777777776664 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0027
     Fer4_17   2 CiqCgy..ClpeCpsyeaydnepkk 24 
                 C +C    C+++Cps+++y+ e++ 
  EGE27214.1 183 CEHCLNptCVASCPSGAIYKREEDG 207
                 99999555***********998875 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.39
     Fer4_17   1 rCiqCgyClpeCpsyeaydn 20 
                 +C++ ++C+  Cp+ ++y n
  EGE27214.1 215 KCRGWRMCISGCPYKKIYYN 234
                 699999*******9887543 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00021      0.23       2      18 ..      13      29 ..      12      64 .. 0.77
   2 ?    0.3   2.3      0.89     1e+03      50      64 ..     182     198 ..     149     199 .. 0.70
   3 ?   -1.8   3.6       3.9   4.4e+03      50      63 ..     215     228 ..     212     294 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
      Fer4_8  2 lekCieCgaCqsaCpvl 18
                l+kCi+C  C  +C  +
  EGE27214.1 13 LDKCIGCHTCSVTCKNV 29
                67999999999999633 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.89
      Fer4_8  50 sCttcga..CtevCpvg 64 
                  C +c +  C+  Cp g
  EGE27214.1 182 LCEHCLNptCVASCPSG 198
                 57777666688888865 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.9
      Fer4_8  50 sCttcgaCtevCpv 63 
                 +C + ++C + Cp 
  EGE27214.1 215 KCRGWRMCISGCPY 228
                 56666666666664 PP

>> Fusion_gly  Fusion glycoprotein F0
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00041      0.46     348     396 ..     169     217 ..     164     225 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00041
                 STTS-SEEEETTEEEE-TTTS-EEETTT-SEE---TT-S-EEE-TTT-S CS
  Fusion_gly 348 ssissrfilskGaivAncksvtCtcgtkkrpIiqkaekgltyisnddcd 396
                 +++ + f++    +   c + tC ++ ++ +I++ +e g+++i++d+c 
  EGE27214.1 169 GQYENTFMMYLPRLCEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCR 217
                 67888999999999999*******************************6 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2     0.062        70      53      64 ..      15      26 ..       8      55 .. 0.81
   2 ?    8.1   1.3    0.0045         5       2      22 ..     183     205 ..     182     215 .. 0.83
   3 ?    4.7   0.9     0.053        60       2      20 ..     216     234 ..     215     253 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.062
     Fer4_16 53 aitgCdiCqdvC 64
                +++gC +C  +C
  EGE27214.1 15 KCIGCHTCSVTC 26
                455666665555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0045
     Fer4_16   2 CgtCgk..CaevCPtnaikekke 22 
                 C  C +  C+ +CP++ai +++e
  EGE27214.1 183 CEHCLNptCVASCPSGAIYKREE 205
                 88887777**********98855 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.053
     Fer4_16   2 CgtCgkCaevCPtnaikek 20 
                 C + + C++ CP + i  +
  EGE27214.1 216 CRGWRMCISGCPYKKIYYN 234
                 899999******9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4190.06
//
Query:       EGE27215.1  [L=266]
Description: nitrate reductase delta subunit NarJ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-14   52.5   0.5    9.5e-14   51.6   0.5    1.5  1  Nitrate_red_del  Nitrate reductase delta subunit


Domain annotation for each model (and alignments):
>> Nitrate_red_del  Nitrate reductase delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.5   5.3e-18   9.5e-14       4     135 ..      43     171 ..      40     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 5.3e-18
  Nitrate_red_del   4 lsaeveealaelaealaaededllelaaeYtrLFlgpgrrsasPyesvYlsekkgllfgestlevrefyrqagle.vaeefneppDHlaveLef 96 
                      +s+ev++ +a+l + +  ++  +le +a Y +LF   ++rs+s++   +++++  + +g++ +++ + y  ag+e  a+e+   pD+l+++Lef
       EGE27215.1  43 ISPEVRQDIATLIDQM--AALGELEAQAKYDSLFE--RGRSLSLWLFEHVHGES-RDRGQAMVDLMAQYDMAGFEiNAKEL---PDYLPMYLEF 128
                      6789999999999999..*****************..9*************444.44555558899999999999555666...********** PP

  Nitrate_red_del  97 lahLaereaeaeea....eeaealleaqkafleehllpWlpef 135
                      l+h a+ + ++++     ++  ++++ ++a l +  + +++ f
       EGE27215.1 129 LSHQATINHDEMQIreeiANISHIVTLLAARLMDKNSHYVGLF 171
                      *****99999888788888888888888888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1822.52
//
Query:       EGE27216.1  [L=234]
Description: nitrate reductase gamma subunit NarI [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-77  258.9  14.8    3.9e-77  258.7  14.8    1.0  1  Nitrate_red_gam  Nitrate reductase gamma subunit
  ------ inclusion threshold ------
      0.023   14.6   1.4      0.023   14.6   1.4    2.0  2  Syndecan         Syndecan domain
      0.025   14.0   3.5        1.2    8.6   0.3    2.6  2  ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
      0.035   14.2   0.2      0.091   12.9   0.2    1.7  1  DUF2684          Protein of unknown function (DUF2684)
       0.14   11.3   7.6      0.052   12.8   4.4    1.8  2  MIG-14_Wnt-bd    Wnt-binding factor required for Wnt secretio
        1.4    8.5   9.8        4.2    7.0   0.6    2.3  2  Tetraspanin      Tetraspanin family


Domain annotation for each model (and alignments):
>> Nitrate_red_gam  Nitrate reductase gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.7  14.8   1.3e-80   3.9e-77       2     219 .]      12     231 ..      11     231 .. 0.98

  Alignments for each domain:
  == domain 1  score: 258.7 bits;  conditional E-value: 1.3e-80
  Nitrate_red_gam   2 tllfvvlPYvalavlvvgsllryrydqftwtskSsqllekklLrlgsplFHvGilvvllgHlvGlliPksvtealgvseelyqllalvaGliag 95 
                      ++lf+++PY+al+v+++g ++r++ +q+tw++ Ssq+l++k +rl+s+lFH+Gi+vvllgH++G+++P+ ++e + +++ ++ql+a+++G+iag
       EGE27216.1  12 VFLFGIYPYIALTVCIFGCWARFDLSQYTWRAGSSQMLSDKGMRLASNLFHIGIIVVLLGHFFGMFTPHFIYERI-ITAPQKQLMAVIVGGIAG 104
                      79*************************************************************************.****************** PP

  Nitrate_red_gam  96 vlalvGlllLllRRltnkrvraatsasDkvvlllLllqillGllttlvsaldy.gseretispwlrslltlqpd..aellaevplifklHvllg 186
                      +++l+Gl++L++RR+tn+r+++++++sDk++ll++llq+++Gl+t++ + ++  g+ + +++ w+++l +l+p   a+l++++ l++k+H++lg
       EGE27216.1 105 IMCLIGLIMLIWRRFTNPRISHTSTFSDKMLLLIILLQLVMGLATIWSYPTHRdGALMLSLAGWAQNLAILRPVyaASLVEDAGLVYKMHMFLG 198
                      ***************************************************99999*****************988999*************** PP

  Nitrate_red_gam 187 lllfalfPFtrLvHvlsapleYllrpyqvvrsr 219
                      ++l++l+PFtrL+H++sap++Yl r+yq+vr++
       EGE27216.1 199 TTLILLVPFTRLIHIISAPIWYLGRRYQIVRQK 231
                      *******************************86 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.4   7.5e-06     0.023       6      31 ..      91     116 ..      86     120 .. 0.84
   2 ?   -4.5   1.5         6   1.8e+04      21      28 ..     135     142 ..     133     145 .. 0.43

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.5e-06
    Syndecan   6 pevlaaviggvvvgllfaillvlflv 31 
                 ++ l avi+g+++g++++i l++++ 
  EGE27216.1  91 QKQLMAVIVGGIAGIMCLIGLIMLIW 116
                 456889*****************985 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 6
    Syndecan  21 lfaillvl 28 
                 l++i+l+ 
  EGE27216.1 135 LLLIILLQ 142
                 34444433 PP

>> ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2    0.0037        11      16      35 ..      52      71 ..      47      75 .. 0.85
   2 ?    8.6   0.3    0.0004       1.2      20      36 ..     102     118 ..      98     127 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0037
                     HHHHHHHHHHHHHHHHHHCC CS
  ATP1G1_PLM_MAT8 16 gGLifAglLfivGiliilSk 35
                      G+ +A  Lf +Gi+++l +
       EGE27216.1 52 KGMRLASNLFHIGIIVVLLG 71
                     69999***********9855 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0004
                      HHHHHHHHHHHHHHCCH CS
  ATP1G1_PLM_MAT8  20 fAglLfivGiliilSkk 36 
                      +Ag+++++G+++++ ++
       EGE27216.1 102 IAGIMCLIGLIMLIWRR 118
                      69**********98666 PP

>> DUF2684  Protein of unknown function (DUF2684)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     3e-05     0.091      24      69 ..      62     111 ..      45     119 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
     DUF2684  24 winiwtailGqffalfplffesrlill....ktqlvivsdnadilriyll 69 
                  i i + +lG+ff +f   f   +i+     +  +viv   a+i+ +  l
  EGE27216.1  62 HIGIIVVLLGHFFGMFTPHFIYERIITapqkQLMAVIVGGIAGIMCLIGL 111
                 689999**********6555555554312213446788899999976554 PP

>> MIG-14_Wnt-bd  Wnt-binding factor required for Wnt secretion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       0.5   1.5e+03      63      84 ..      19      41 ..       9      50 .. 0.60
   2 ?   12.8   4.4   1.7e-05     0.052     156     250 ..      61     150 ..      45     175 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.5
  MIG-14_Wnt-bd 63 iisliililflfslr.klsfrdw 84
                   + + +++++f  + r  ls+ +w
     EGE27216.1 19 PYIALTVCIFGCWARfDLSQYTW 41
                   44455555555555556666665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.7e-05
  MIG-14_Wnt-bd 156 ylpklllvll..lwlvllvlalyerleqlkdpfysiwssalilkilaiilavlyflyLlylifrsfseirskrvkegdiRfkflilltllvlavlv 249
                    +   +++vll  ++ +++ +++yer+ +  +         l+  i+ +i+++++++ L++li+r f++ r +  + ++ ++ +li+l  lv+ +++
     EGE27216.1  61 FHIGIIVVLLghFFGMFTPHFIYERIITAPQKQ-------LMAVIVGGIAGIMCLIGLIMLIWRRFTNPRISHTSTFSDKMLLLIILLQLVMGLAT 149
                    444455554422666777777888866655542.......267899999999999***************98877666677776666666555555 PP

  MIG-14_Wnt-bd 250 i 250
                    i
     EGE27216.1 150 I 150
                    4 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.6    0.0014       4.2      15      68 ..      21      76 ..       9      79 .. 0.84
   2 ?    6.1   2.2    0.0027       8.1      51     100 ..      94     149 ..      80     166 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0014
                 XXXXXXXXXXXXXX.XXX.....................XXXXXXXXXXXX.XXXX CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  Tetraspanin 15 igivllavGvwlrl.khaeaalacllsesaedpailaillivvGvllfllg.flGc 68
                 i++ ++++G w+r+  ++++++a  +++ + +   la  l+ +G++++llg f+G+
   EGE27216.1 21 IALTVCIFGCWARFdLSQYTWRAGSSQMLSDKGMRLASNLFHIGIIVVLLGhFFGM 76
                 78999*********9888889999999999999999999******88888846665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0027
                  ..XXXXXXXXXXXXXXXXXX.XXXXXX....XXXXXXX.XXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxx.xxxxxx....xxxxxxx.xxxxxxxxxxxxxxxxx RF
  Tetraspanin  51 illivvGvllfllgflGcig.alkenk....cllltfs.llllvlfllelaagilg 100
                   + ++vG +  +++++G+i+ ++++ +        tfs  +ll+++ll+l++g+ +
   EGE27216.1  94 LMAVIVGGIAGIMCLIGLIMlIWRRFTnpriSHTSTFSdKMLLLIILLQLVMGLAT 149
                  35788888888888888777344443355667888999988889999999988744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1783.96
//
Query:       EGE27217.1  [L=367]
Description: PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-20   72.6   0.0    7.4e-20   71.6   0.0    1.5  1  Rotamase_3  PPIC-type PPIASE domain
    2.7e-18   66.7   0.0    5.6e-18   65.7   0.0    1.6  1  Rotamase    PPIC-type PPIASE domain
    9.2e-08   33.0   0.0    2.6e-07   31.5   0.0    1.8  1  Rotamase_2  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   1.2e-23   7.4e-20      17     115 ..     210     311 ..     193     312 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.2e-23
  Rotamase_3  17 kvshIlistkg....kesrseeeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHiik 111
                  ++hIl++       +  + +++a++++d l +  ++ +dF ++A +yS+ p+ k+ GGelg+++kg +v+eFe+avf+l++g  +++++t +G+H+i+
  EGE27217.1 210 TLRHILLACPPqegeERIELKKQARQLIDRLNQSHNRDSDFIEFACRYSACPS-KDDGGELGVLQKGSTVPEFESAVFALPVGISINPIETRYGIHVIE 307
                 578999998663333333445555666666666667889***********886.********************************************* PP

  Rotamase_3 112 vtdk 115
                 v++k
  EGE27217.1 308 VLQK 311
                 *998 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   9.3e-22   5.6e-18       1      95 [.     213     308 ..     213     310 .. 0.82

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 9.3e-22
                 EEEESSCCSE----....HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEE CS
    Rotamase   1 HILlkvkekaseke....raeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikl 95 
                 HILl++++ ++ +e    +++a++ ++++ ++++ + d F e A +yS  ++s+ +gG+lg ++kg ++pefe+a+f+l  G  ++p+et++G h+i++
  EGE27217.1 213 HILLACPP-QEGEErielKKQARQLIDRLNQSHNRDSD-FIEFACRYS-ACPSKDDGGELGVLQKGSTVPEFESAVFALPVGISINPIETRYGIHVIEV 308
                 ********.55555011144555555555555555556.*********.************************************************97 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   4.4e-11   2.6e-07       2     120 ..     188     323 ..     187     324 .. 0.69

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 4.4e-11
  Rotamase_2   2 teaevkayYeankdef.skpegktlelavvk...dqvaaeaalalakag.........aekdfaalakgnskkaadlg.....ifesasnlpeelakaa 82 
                 + a  ++yY an+ ef s p + +++++ +    + ++    +++a++           + df ++a ++s ++++++     + ++ s++p e+++a+
  EGE27217.1 188 DKASCQNYYHANQVEFvSMPIMTLRHILLACppqEGEERIELKKQARQLidrlnqshnRDSDFIEFACRYSACPSKDDggelgVLQKGSTVP-EFESAV 285
                 67788999999999995556666666444432222222222244444446666666665566666666666665554455555666667777.****** PP

  Rotamase_2  83 falkpgevsgpvetdngyyivkvtevkpakvppfeevk 120
                 fal++g   +p+et  g++++ v +++++++++fee+ 
  EGE27217.1 286 FALPVGISINPIETRYGIHVIEVLQKQEGRQLSFEEAY 323
                 ******8888**************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2858.57
//
Query:       EGE27218.1  [L=425]
Description: molybdopterin molybdochelatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-37  127.6   0.0    4.6e-37  127.2   0.0    1.2  1  MoeA_N         MoeA N-terminal region (domain I and II)
    1.1e-21   77.0   0.0    1.7e-21   76.4   0.0    1.3  1  MoCF_biosynth  Probable molybdopterin binding domain
      6e-14   52.0   0.0    1.2e-13   51.1   0.0    1.5  1  MoeA_C         MoeA C-terminal region (domain IV)


Domain annotation for each model (and alignments):
>> MoeA_N  MoeA N-terminal region (domain I and II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.0   7.7e-41   4.6e-37       3     157 .]       4     181 ..       2     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 7.7e-41
                 HHHHHHHHHHH-.HH.........-EEE.EEGGCG-TT-BBSS-EE-SS-BSSS-EESSSEEEEEEBTTB--................-S---TT-EEE CS
      MoeA_N   3 veealaiilaal.el.........eeee.vplaaealgrvlaedvvApedvPpfdnSamDGYAvraeagsgaseeep.....saageeperllpggavr 85 
                 v+e ++ i +++ e          ++ + ++l ++al+++la d+ A+ d+P+ + SamDG+A+ a++  ++    +      a++  +++ lp++avr
  EGE27218.1   4 VDELQKSIISRVdEYlnidnplvsRQRVvLAL-NDALNHILAVDINANLDIPRQNVSAMDGFALVAQSQLQQGDGFTvigesCAGTPFNGEILPNQAVR 101
                 55656655555544455566666644444888.99****************************966655555444447888555566677777777*** PP

                 E-TTSB--TT--EEEEGGGE..E.......EETTE.........S--STTTTEE-TTSSB-TTSEEE-TTBB--CCCHHHHHHCT CS
      MoeA_N  86 imTGaplPegadaVvpvEdte.eee...aketvev.........kavkpgenvrraGedikaGevllragtrltpaeigllasvG 157
                 i+TGa++Peg+d+Vv++E+t+ ++          +         k++k  +n+r +Ge+i++G++ll+ag+rl+p++i+ll s+G
  EGE27218.1 102 IFTGAVVPEGCDTVVMQEHTTfDQInitD-----KsqpyyialtKPAKVSANIRYQGEEIAQGDTLLSAGKRLNPSDISLLSSMG 181
                 ********************753334330.....1335677889999999*********************************98 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   2.9e-25   1.7e-21       2     142 ..     195     334 ..     194     336 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 2.9e-25
                    EEEE-HHHH........TTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-HHH CS
  MoCF_biosynth   2 vitvGdell........sgkieDtngpllaellkelgvevskytvvpDdeeeikeallaaleeadviittGGtGptpdDvtpealaklfekelegf 89 
                     i++Gdel+          +i+++n+p+l++ll++l + +++y++v+D  +e+ e +++a+ee d+ii++ G++++++D+  e+++ l++      
     EGE27218.1 195 LIATGDELVsigqplsdLAQIYNSNTPTLKALLRKLPIIIKDYGIVKDVFDETYEMVKRAIEECDIIISSAGVSVGDYDFLTEVVRSLGK------ 284
                    699**************9***********************************************************************9...... PP

                    HHHHHHHHHHHCCTTSHGGGGGGE.EETTE.EEEE-SSHHHHHHHHHHHHHGGH CS
  MoCF_biosynth  90 eeafrrvslkpgkpvgvapgailsravgkt.iigLPGspkavkealeeillpal 142
                     +   +v++kpgkp++++ +a   r+      +gLPG+p +  ++  ++++pal
     EGE27218.1 285 -INHYKVAMKPGKPFVFGEFAADARK---VlYFGLPGNPLSTVVGCINFVRPAL 334
                    .8999***************887775...6588*******99999999988887 PP

>> MoeA_C  MoeA C-terminal region (domain IV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   1.9e-17   1.2e-13       2      71 ..     351     420 ..     350     421 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 1.9e-17
                 EEESS-EE--SSS-EEEEEEEES-S-EEEEEE-S---TT-GGGCTT--EEEEE-TT--EE-TT-EEEEEE CS
      MoeA_C   2 arlaedlksdpgrreflRvilteedgeyvaeptgkqgSglLsslaeAnglivipegtegleaGeeVevil 71 
                 a +++++k+  grre++R+  +  + ++ ++p + q+S+++  l++An+liv++e+  g+++Ge+V ++l
  EGE27218.1 351 AITTANIKKSVGRREYQRGYFEMGEKKLQVTPSSAQDSHRIKQLSQANCLIVLDENSMGVNKGEQVIIQL 420
                 678999****************8889****************************************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3372.47
//
Query:       EGE27219.1  [L=223]
Description: molybdate ABC transporter ATPase subunit ModC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-29  100.6   0.0    1.3e-28  100.2   0.0    1.2  1  ABC_tran  ABC transporter
    0.00071   19.1   0.2     0.0084   15.6   0.2    2.0  1  SMC_N     RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.051   13.4   7.6       0.91    9.3   1.2    2.2  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
      0.063   13.5   0.1        1.6    9.0   0.1    2.2  1  SbcCD_C   Putative exonuclease SbcCD, C subunit
      0.089   13.3   0.0       0.11   13.0   0.0    1.4  1  AAA_23    AAA domain
       0.09   12.5   0.2       0.18   11.6   0.2    1.5  1  AAA_29    P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.0   4.4e-32   1.3e-28       4     136 ..      33     177 ..      31     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 4.4e-32
                 EEEEEETTS.EEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTC...H CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxx...x RF
    ABC_tran   4 vslklkege.kvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.........esdee...i 85 
                 +s++l+ ++ +++++G +G+GK+++l ++agl  p++G+i+++g+ + +    +++++ ++++g ++q++q+fp+++v +n         + d++   +
  EGE27219.1  33 LSVDLQSSQpVMGLFGISGSGKTSILHTIAGLNAPKNGSIRINGQTWFDgekkINIPIQQRRVGLVFQDAQIFPHKSVMNNllfgyhnidD-DQRrfhP 130
                 5666666653789**********************************9999999*********************************9742.333577* PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++++ l+l +l+++      ++LSgG+kqrval rall  p+llllDEp 
  EGE27219.1 131 DEIIELLKLGHLTQRMP----TKLSGGEKQRVALGRALLYSPNLLLLDEPL 177
                 ***********888887....*****************************7 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   2.8e-06    0.0084      20     204 ..      37     215 ..      31     222 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.8e-06
                 EETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  20 lpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkev 118
                 l+ s+ +  + G  GSGK+++l  i   L   ++ ++r +  +    ++k +  +++ +v ++f++ +       ++ s++ ++  + + ++  ++++ 
  EGE27219.1  37 LQSSQPVMGLFGISGSGKTSILHTIA-GLNAPKNGSIRINGQTWFDGEKKINIPIQQRRVGLVFQDAQIF-----PHKSVMNNLLFGYH-NIDDDQRRF 128
                 55666677889999999999999994.4555555578877766666667777788888888888777665.....33344444433333.445566777 PP

                 -HHHHHHHHHCTT-STT...CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH..HCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
       SMC_N 119 tkkevsellesagiske...lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke..ksknaQfivislreemlek 204
                 +  e+ ell+  ++++     LSgGek+ val     +  ++p+ l llDe  +aLD  + +++  ++++  ++++  ++ +s+++  +++
  EGE27219.1 129 HPDEIIELLKLGHLTQRmptKLSGGEKQRVALGRA--L-LYSPN-LLLLDEPLSALDSIHKQEILPFFEQiiHTTHIPMLYVSHDKSEIQQ 215
                 779******999998653338******98887433..2.35664.889**************99988886224555667777777766555 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.2    0.0003      0.91       2      24 ..      44      66 ..      43      99 .. 0.71
   2 ?    8.1   0.9   0.00068         2     219     272 ..     120     182 ..      80     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0003
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                ++l G  gsGK+++L ++ +l  
  EGE27219.1 44 MGLFGISGSGKTSILHTIAGLNA 66
                7899**************99943 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00068
      AAA_21 219 r............gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP 272
                 +             + +l+ g+  ++ +++lS G k+  al  all+ +    lll+DEp + L+ 
  EGE27219.1 120 NidddqrrfhpdeIIELLKLGHLTQRMPTKLSGGEKQRVALGRALLYSP---NLLLLDEPLSALDS 182
                 0333333446666888899999999999*******************99...89*******99986 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00053       1.6      26      89 ..     143     193 ..     137     194 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00053
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 ++r+ ++lSGGekq    +al+ al  lys        + l++LDE  s lD+   +++l ++e
  EGE27219.1 143 TQRMPTKLSGGEKQR---VALGRAL--LYS--------PNLLLLDEPLSALDSIHKQEILPFFE 193
                 677778899999954...4555444..333........46899999999999877777776665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.8e-05      0.11      13      40 ..      33      62 ..      23     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.8e-05
      AAA_23 13 qeidF..skgltlItGpNGaGKTTildAik 40
                 ++d+  s+++  ++G  G+GKT+il  i 
  EGE27219.1 33 LSVDLqsSQPVMGLFGISGSGKTSILHTIA 62
                456777799*****************8775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2     6e-05      0.18      19      55 ..      37      75 ..      30      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6e-05
      AAA_29 19 idlkg.atlltGpsGsGKSTllDAiqalLvpak.kvrfN 55
                ++ ++ ++ l G sGsGK+++l  i+ l  p++ ++r N
  EGE27219.1 37 LQSSQpVMGLFGISGSGKTSILHTIAGLNAPKNgSIRIN 75
                55555677899***********99999988888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1794.48
//
Query:       EGE27220.1  [L=230]
Description: molybdate ABC transporter, permease protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-17   62.4   9.8    6.2e-17   61.9   9.8    1.2  1  BPD_transp_1  Binding-protein-dependent transport system inne
     0.0053   16.4   0.7       0.33   10.6   0.7    2.5  1  Oxidored_q2   NADH-ubiquinone/plastoquinone oxidoreductase ch


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   9.8     7e-21   6.2e-17       2     148 ..      32     189 ..      31     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 7e-21
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.............vilsilghlilpviillllsaapyvrlirraalrslpkdlve 85 
                   i +G+l+a ++ ++++ l+ +l++++l lP++v + +l+++f                 +l + + +++++++++ +p+++  +r a++ ++k l+ 
    EGE27220.1  32 IAMGWLLA-RKDFFGKSLFETLVFLPLVLPPVVPGYILLVLFgnqgiigqylsqlG--FDLAFNWKGAVLASAVMGFPLMVQSVRLAIELVDKHLEL 125
                   889*****.************************9999999999******9987432..2466777789***************************** PP

  BPD_transp_1  86 aaralGasrwqifrkvvlPnalppiitglilafggllgga.vlleflgswpGlgtllleailgy 148
                   +a  lGasr q f++++lP+a   i+ g+il+f ++lg++ + + f+g+ +G +++l  ai + 
    EGE27220.1 126 TAMSLGASRLQAFFQITLPLAGAGIVIGAILSFCRSLGEFgATITFVGNISGETRTLPLAIYSL 189
                   ***************************************9455778999999777777776543 PP

>> Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.7   3.7e-05      0.33      27      95 ..     102     226 ..      96     229 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.7e-05
                  HHHHHHHHHHHHHHHHHHHHHC.....................................................................TTSCGGH CS
  Oxidored_q2  27 liglelisnavnlllvlagvftegtlvi........................................................tnpatefadplpqa 68 
                  ++g+ l+  +v l++ l+ +  e t++                                                           +  +  d  +q+
   EGE27220.1 102 VMGFPLMVQSVRLAIELVDKHLELTAMSlgasrlqaffqitlplagagivigailsfcrslgefgatitfvgnisgetrtlplaIYSLLQQPDSDAQI 199
                  556666666666666666555554444455555555555555555555555555555555555555555566666666655656555566678899** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHS CS
  Oxidored_q2  69 lvLtaivigaaetavgLallvrlyrey 95 
                  + L+++ +g+a  a+ L+  ++ y+++
   EGE27220.1 200 MRLLMLSVGVAFSALWLSQWYARYQKR 226
                  *****************9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1715.79
//
Query:       EGE27221.1  [L=254]
Description: molybdate ABC transporter, periplasmic molybdate-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-44  152.9   0.1    1.3e-44  152.7   0.1    1.0  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    9.8e-15   55.3   1.0    5.4e-07   29.9   0.0    2.2  2  SBP_bac_1   Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.1   1.4e-48   1.3e-44       1     229 [.      28     251 ..      28     252 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 1.4e-48
                 .EEEE-SSTHHHHHHHHHHHHHHH---EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-TT....---S CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaFeahtgvkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqaesavplassplviavpkgnpk....kikg 95 
                 ltv+aa+s++ a++++++ +e++++ kv+ s++ s++la+qi++ga++D++i+a++ w++ la++++++++s+++l +++lv+++pk+np     ki+ 
  EGE27221.1  28 LTVYAAASMTNAVEDINKLYEKKYNSKVKTSFAASSTLAKQIEQGAPADIYISANTSWMDYLAKKDKIVSSSYKNLLGNRLVMITPKNNPIktsiKIDK 126
                 89***************************************************************************************9633336778 PP

                 HHHHHHSS-.-EEEE--T-TTTTHH.HHHHGGG--HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH..HSTTSSEEE.E--TTT--... CS
  SBP_bac_11  96 wadLlkpgl.klavadPttspsGlaalalleaagaqellkalekkvvklgessrqlltaveageadagivyeseakaaengdkleav.ylpeglnldpl 192
                   d++++ + kl + + ++ p+G++a+++l+++g   +++++  + v ++e++r +l++v++ge ++givy ++ak     ++++++ + p ++++ p+
  EGE27221.1 127 SFDIGNAFTgKLCTGNTASVPVGKYAKEALTNLG---WWDTIGPRLV-ETEDVRAALNFVNRGECQLGIVYATDAK---VVKNVQVInTFPITTHT-PI 217
                 8889988667************************...**********.99**************************...7*******999*****6.** PP

                 EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT- CS
  SBP_bac_11 193 dypaavlkkaakreaAraFlafLrspeaqailrkyGf 229
                 +yp+ ++k++   ++A+ +++fL++ ea+a+  kyGf
  EGE27221.1 218 VYPISMVKQS---REAQQYYDFLQTNEAKAVYYKYGF 251
                 ********98...8**********************9 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   2.9e-09   2.6e-05      10      69 ..      36      93 ..      16     101 .. 0.85
   2 !   29.9   0.0     6e-11   5.4e-07     190     315 .]     149     244 ..     124     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.9e-09
                HHHHHHHH....HHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTT CS
   SBP_bac_1 10 lqalvaka....fekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakag 69
                +  +v ++    +ek +++ kV+  +  s++la     +i++G+ paD+ ++ +++w++ lak++
  EGE27221.1 36 MTNAV-EDinklYEK-KYNSKVKTSFAASSTLAK----QIEQGA-PADIYISaNTSWMDYLAKKD 93
                33334.445556999.78****************....******.88***************994 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 6e-11
                 SHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEE CS
   SBP_bac_1 190 npegvtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayg 288
                   ++++a+t l ++          ++  +e++d++aal+ +++Ge+ ++iv+ ++a+++++v     f+++++ p                    ++y+
  EGE27221.1 149 GKYAKEALTNLGWWD-------TIGPRLVETEDVRAALNFVNRGECQLGIVYATDAKVVKNVQVINTFPITTHTP--------------------IVYP 220
                 333334444444444.......999******************************99999999999999999999....................**** PP

                 EEEBTTCSTHHHHHHHHHHHTSHHHHH CS
   SBP_bac_1 289 laipkgsknpeaAkkFldfllspeaqa 315
                 + ++k+s +   A+++ dfl+++ea+a
  EGE27221.1 221 ISMVKQSRE---AQQYYDFLQTNEAKA 244
                 *********...************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1799.29
//
Query:       EGE27222.1  [L=141]
Description: putative molybdenum-pterin-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-30  103.0   3.4    8.9e-15   54.7   0.2    2.0  2  TOBE        TOBE domain
     0.0022   17.9   0.0        2.3    8.2   0.0    2.5  2  TOBE_3      TOBE-like domain
  ------ inclusion threshold ------
      0.046   13.9   0.1        2.6    8.3   0.0    2.2  2  TOBE_2      TOBE domain
       0.31   11.3   6.1        6.5    7.1   0.6    3.5  3  FLgD_tudor  FlgD Tudor-like domain


Domain annotation for each model (and alignments):
>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.3   8.1e-17   3.6e-13       2      64 .]       4      66 ..       3      66 .. 0.98
   2 !   54.7   0.2     2e-18   8.9e-15       2      62 ..      75     135 ..      74     137 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 8.1e-17
        TOBE  2 sarNqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaakvhl 64
                sarNql +t++++  ++++ ++ + l +g +LtA++t +s  +L La+G  V+a +ka +v++
  EGE27222.1  4 SARNQLNATIKHIQSGAVNDVIKLSLTDGDELTAVITSESTKRLNLAVGGSVVAIFKAPSVIV 66
                9************************************************************86 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 2e-18
        TOBE   2 sarNqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaakv 62 
                 s rNql+gtV+ ++++++++e+++ ++ g+ + A +t +s+++L La+G++V+alika+ +
  EGE27222.1  75 SSRNQLQGTVESITDGAVNAEITIKTASGTVISAIITSQSCQNLNLAVGSPVTALIKASHI 135
                 67********************************************************975 PP

>> TOBE_3  TOBE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0005       2.3       4      56 ..       6      57 ..       4      58 .. 0.82
   2 !    7.1   0.0    0.0011         5      21      56 ..      92     127 ..      75     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0005
      TOBE_3  4 egglpatvrrirpvGpivRlELerlgdtgeliEvelprdrfeelglae.Getvy 56
                 + l at+++i+  + +  + L +   +g+ +++ ++ +  ++l+la+ G+ v+
  EGE27222.1  6 RNQLNATIKHIQSGAVNDVIKLSLT--DGDELTAVITSESTKRLNLAVgGSVVA 57
                5778889999998888888889555..88899999999999*******888775 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0011
      TOBE_3  21 vRlELerlgdtgeliEvelprdrfeelglaeGetvy 56 
                 v +E+  + ++g++i + ++ +  + l+la+G+ v 
  EGE27222.1  92 VNAEITIKTASGTVISAIITSQSCQNLNLAVGSPVT 127
                 44555556669*********************9885 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.015        68      14      70 ..       4      61 ..       1      67 [. 0.74
   2 ?    8.3   0.0   0.00057       2.6      16      75 ..      77     137 ..      68     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.015
      TOBE_2 14 gganglsGtVedveylGsstryv.velaggqlvvvrqpnadr.dsalapGdtVelswdp 70
                +++n+l++t+++++  G+  ++  ++l +g +++++  +++  + +la+G  V   +++
  EGE27222.1  4 SARNQLNATIKHIQ-SGAVNDVIkLSLTDGDELTAVITSESTkRLNLAVGGSVVAIFKA 61
                55689999999987.58888777799999999888877777767889988888766665 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00057
      TOBE_2  16 anglsGtVedveylGsstryvvelaggqlvvvrqpnadr.dsalapGdtVelswdpddavv 75 
                 +n+l+GtVe+++      ++++++a+g+ + +   +++    +la+G+ V+  +++ ++v+
  EGE27222.1  77 RNQLQGTVESITDGAVNAEITIKTASGTVISAIITSQSCqNLNLAVGSPVTALIKASHIVL 137
                 589*********999999**********9999777777655999******99998888875 PP

>> FLgD_tudor  FlgD Tudor-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.23   1.1e+03      25      50 ..       7      33 ..       2      37 .. 0.74
   2 ?    4.5   0.1     0.009        40      32      52 ..      36      55 ..      32      59 .. 0.79
   3 ?    7.1   0.6    0.0015       6.5      27      53 ..     101     127 ..      63     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.23
                EEEEEEEEEEEE..ETTEEEEEETTEE CS
                xxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  FLgD_tudor 25 tlvygtVdsVsl.stggglmLnLglgg 50
                 + ++t+  ++  + +  ++L+L +g 
  EGE27222.1  7 NQLNATIKHIQSgAVNDVIKLSLTDGD 33
                567788888888888888889888765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.009
                EEEEE.ETTEEEEEETTEE.E CS
                xxxxxxxxxxxxxxxxxxxxx RF
  FLgD_tudor 32 dsVslstggglmLnLglggtv 52
                ++V + + +++ LnL+ gg+v
  EGE27222.1 36 TAVIT-SESTKRLNLAVGGSV 55
                67888.778888****77766 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0015
                 EEEEEEEEEE.ETTEEEEEETTEE.EE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  FLgD_tudor  27 vygtVdsVslstggglmLnLglggtvp 53 
                 ++gtV s  +++++ + LnL+ g+ v+
  EGE27222.1 101 ASGTVISAIITSQSCQNLNLAVGSPVT 127
                 57888888888999999****999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1111.94
//
Query:       EGE27223.1  [L=164]
Description: molybdopterin synthase subunit MoaE [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-31  107.2   0.0    6.5e-31  106.9   0.0    1.1  1  MoaE      MoaE protein


Domain annotation for each model (and alignments):
>> MoaE  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   3.6e-35   6.5e-31       6     112 ..      35     141 ..      30     142 .. 0.95

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 3.6e-35
                 --HHHHHHHH--TT--EEEEEEEE------TS-EEEEEECC-HHHHHHHHHHHHHHHHCCCTTSEEEEEEE-EEEETTSEEEEEEEEESSHHHHHHHHH CS
        MoaE   6 ldvaeiealvaspkaGAvvlFvGtvRdsfdgkkvteLeyeayepmaektleeiaeearerwelervavvHrlGelevgeasvvvavssahRkeafeace 104
                 +d +++++ + ++++GA+v+F G+vR++++++ v++L+y  ye +a+++ + +++ea +r+++e++ ++Hr+G+l++g+ +v+++vs++hR  afeac+
  EGE27223.1  35 IDEKKLKKGLLDDRCGALVTFEGWVRNHNNSRPVEKLTYYGYEALALNQGKLLISEACQRFKIENAIAMHRIGDLNIGDMAVWIGVSAHHRYPAFEACQ 133
                 66677777777999************************************************************************************* PP

                 HHHHHHHH CS
        MoaE 105 ylidelKk 112
                 +l+d +K+
  EGE27223.1 134 WLLDAIKA 141
                 *******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1382.38
//
Query:       EGE27224.1  [L=83]
Description: putative molybdopterin synthase subunit MoaD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-14   54.7   0.0    1.3e-14   54.5   0.0    1.0  1  ThiS      ThiS family


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   7.4e-19   1.3e-14       1      77 []       9      83 .]       9      83 .] 0.96

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 7.4e-19
                EEETTCCHHHHT.CEEEEESSTSBHHHHHHHHHHHTCHHGTTTTEEEEETTEEEGCCTTTSB--TTCEEEEEESTTC- CS
        ThiS  1 vllfaelrelag.eeelelaegstvaelleaLgerypelalerrvavavNgeivprlwldtelkdgDevailppVaGG 77
                vl+fa+l e ag +ee++ ++   + ++   L  +y+     + +avavN +i+++   +t++++gD +a++ppVaGG
  EGE27224.1  9 VLYFASLAEQAGiDEEILTTSHYYLNDIYSYLLDKYDFNLTQDELAVAVNHQIANW---QTKVSNGDIIAFIPPVAGG 83
                89******************************9999666688**************...******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 736.73
//
Query:       EGE27225.1  [L=163]
Description: molybdenum cofactor biosynthesis protein C [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-50  169.0   5.8    6.2e-50  168.8   5.8    1.0  1  MoaC      MoaC family


Domain annotation for each model (and alignments):
>> MoaC  MoaC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   5.8   3.5e-54   6.2e-50       1     136 []      20     157 ..      20     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 3.5e-54
                 E---TTS--EEEEEEEEEEEEE-HHHHHHHHTTS..STTB-HHHHHHHHHHHHHHHHHHHSTT-----EEEEEEEEEEETTTTEEEEEEEEEEEESS-- CS
        MoaC   1 mvdvsekeetkrtAvAegrvklseetlelikekk..lkkGdvlavariagimaaKktseliplcHplpltkveveleleeeeesveieatvktegktGv 97 
                 mvdvs+k +t+r+A+A+++v ++++++ +ik+++  +kkG + ++a++agim+aKkts+liplcH+lpl++v++++e ++++ ++ ++a+vk+++ktGv
  EGE27225.1  20 MVDVSTKIVTQRSATASAQVIFPSNIYLAIKNTDgmTKKGSITQTAHLAGIMGAKKTSDLIPLCHQLPLDSVKLSFEYNDAKCAIVVTAAVKVAHKTGV 118
                 9*****************************9744449************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTTHTT-EEEEEEEEEEESS CS
        MoaC  98 emEALtavsvaaltvyDmvKavdkemvieevrlveKsgG 136
                 emEALtavsva+lt+yDm Ka+++++ i++v l++K+gG
  EGE27225.1 119 EMEALTAVSVACLTIYDMTKAMSHDIIITDVCLLNKTGG 157
                 **************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1181.73
//
Query:       EGE27226.1  [L=179]
Description: molybdenum cofactor guanylyltransferase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-11   45.0   0.0    1.8e-11   44.6   0.0    1.1  1  NTP_transf_3  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0     1e-15   1.8e-11      12     157 ..       1     144 [.       1     149 [. 0.80

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1e-15
                   TTTTHHHHCC.CCCCHHHHHHHHHCTT.-CEEEEECSH..CHHHHHHTTC.TS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEEEETT-TT--HHHH CS
  NTP_transf_3  12 mggdKallpl.ggkpllervldalraagvdevvvvggd..eevlaalarl.gvrvvededpgkgplaslaaalraaadadavlvlacDmPlltpelv 104
                   mg++Ka l l ++ ++l+ +++ ++++++ +++++ +   ++  + + +l ++   +d+ +g+gpl+++ a+l+a++++ ++l ++cD+ l   + +
    EGE27226.1   1 MGQPKAQLALpNKSTVLDFHIACAKKLNL-PIFLADNGknSAHDPLITPLkDYLPCNDSGKGAGPLSGITAGLQAVESEGYILTVSCDHLL-AIDKI 95 
                   9*********9999*************86.9999977622334444444425888999999****************************66.55666 PP

                   HHHHHCHHHHTSSEEEEESSSEEEECC..EEEGGGHHHHHHHCTHTTHHHCHHHH CS
  NTP_transf_3 105 erllaaaaasgadvvvptyegerghpl..lfrarllsalaallgdqgarrllrrl 157
                   + +l+    ++a+v ++ ++++   pl  ++++++l+ l+ +l+ qg+r++++ l
    EGE27226.1  96 ADILK---FTSAQVGYLYAKKDC--PLlgVYHTSILPILLDFLA-QGGRSVMQFL 144
                   66665...457777777666555..555799***********95.9*****9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1435.19
//
Query:       EGE27227.1  [L=189]
Description: molybdenum cofactor biosynthesis protein B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-31  106.8   0.1    8.7e-31  106.5   0.1    1.0  1  MoCF_biosynth  Probable molybdopterin binding domain


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.1   4.8e-35   8.7e-31       1     143 [.      27     169 ..      27     170 .. 0.94

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 4.8e-35
                    EEEEE-HHHHTTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTS..SEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHHHH CS
  MoCF_biosynth   1 avitvGdellsgkieDtngpllaellkelgvevskytvvpDdeeeikeallaaleea..dviittGGtGptpdDvtpealaklfekelegfeeafr 94 
                    av+tv+d+++    eDt+g++l++ l e+g+ + ++++ +Dd+ +i++ + a+++++   +iittGGtG+ ++D +pea+  lf+ke++gf+e fr
     EGE27227.1  27 AVLTVSDTRILD--EDTSGKFLVDSLVEAGHVLVDRKLTKDDIYQIRAVISAWIADEriHAIITTGGTGFYHRDNMPEAVGVLFDKEVQGFGEMFR 120
                    79**********..9***********************************777777778************************************* PP

                    HHHHHHCCTTSHGGGGGGE.EE....TTE.EEEE-SSHHHHHHHHHHHHHGGHH CS
  MoCF_biosynth  95 rvslkpgkpvgvapgailsrav....gkt.iigLPGspkavkealeeillpale 143
                     +s+ +     +++ +  srav    ++t i++LPGs +a+++++e i++++l+
     EGE27227.1 121 YLSHGE-----IGMSTLQSRAVagmaNNTvIFCLPGSTGACRTGWEGIIKQQLD 169
                    *****8.....8888889**99***9777688*****************88875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1536.31
//
Query:       EGE27228.1  [L=225]
Description: MOSC domain protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-14   52.7   0.0    5.8e-14   52.2   0.0    1.2  1  MOSC      MOSC domain


Domain annotation for each model (and alignments):
>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   3.2e-18   5.8e-14       2     130 ..      53     171 ..      52     172 .. 0.87

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 3.2e-18
                 XX---GGGGSEEEEETHHHHHHHHHS..GGGGG-STTTT--SEEE.S-.......-TTT-BTT-E.EEETT.....................EE----T CS
        MOSC   2 rkihggdekavllisresldalneelkegrsveldpgrfreNivv.ggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdqetga.....rprepck 94 
                 +k+hgg+ kav+ ++   +d +n+ +  g   ++++g+++eN++v +        ++++++igd  +++g+a           +  +     +pr pc+
  EGE27228.1  53 HKFHGGPLKAVHQMPITTYDVINQAF--GL--NIPVGSLGENLTViTD---KIPMDERSVCIGDI-YQFGDA-----------DDCVqlrlvQPRRPCY 132
                 799***********************..76..7************544...466899999*****.****73...........333345566******* PP

                 HHHH.H..TTHHHHHHHHT---EEEEEEE-EEEETTS-E CS
        MOSC  95 tlak.f..rrvdkrvkgkgrfGvylrvleegtvrvGdev 130
                 ++++    +++++ v ++g+ G+y+ v+++g+++++ +v
  EGE27228.1 133 KINDrLntPNISSFVSHQGIAGWYYQVIKTGIIKPDLSV 171
                 ****669999**9999*****************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1676.23
//
Query:       EGE27229.1  [L=361]
Description: molybdenum cofactor biosynthesis protein A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-32  110.1   0.0    1.1e-31  109.5   0.0    1.3  1  Mob_synth_C  Molybdenum Cofactor Synthesis C
    5.7e-18   65.9   0.0    8.3e-18   65.3   0.0    1.3  1  Radical_SAM  Radical SAM superfamily
    2.7e-10   40.7   0.0    6.2e-10   39.5   0.0    1.5  1  Fer4_12      4Fe-4S single cluster domain
    8.5e-05   22.7   0.0    0.00023   21.2   0.0    1.8  2  Fer4_14      4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.028   13.8   0.1      0.046   13.0   0.1    1.2  1  GAPES1       Gammaproteobacterial periplasmic sensor domain


Domain annotation for each model (and alignments):
>> Mob_synth_C  Molybdenum Cofactor Synthesis C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0   2.9e-35   1.1e-31       3     127 ..     221     344 ..     219     345 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 2.9e-35
                  EEEEE---B-TTSSB--SSB--HHHHHHHHHHHS-EEEE--SST-SSEEEEETTT--EEEEE-TTTS--GGG--EEEE-TTSEEESSSS-SS-EEHHH CS
  Mob_synth_C   3 lrfIElmpvgegeewrekkvvsadeilerieerlalleakketkgpakrykikdgkgeiglIapvsepFCasCnRlRltadGklktCLfaeeeidlrd 100
                   rfIE+m++ + ++ +  ++ s+++i + + ++ + ++ ++  +gpa +y+++d+ g+iglI+p+s +FC++CnRlR++++G++++CLf +++ d+r+
   EGE27229.1 221 YRFIEFMQTSDNSQLFFAEHTSSQHIKTYLIKHGWRAQMRATDGGPATEYSHPDYVGKIGLIEPYSPKFCDHCNRLRVSSQGQVHLCLFDSQNYDIRP 318
                  69************************************************************************************************ PP

                  HHHTT--HHHHHHHHHHHHHT----HH CS
  Mob_synth_C 101 llregaseeeLkelikealarkkekhk 127
                  +l +g++ + L +++++ +  k+e+h+
   EGE27229.1 319 YLTQGDT-QGLIQALQALMPIKPEHHH 344
                  *****75.67**************997 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   2.3e-21   8.3e-18       2     130 ..      54     178 ..      53     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 2.3e-21
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerlle 99 
                  ++t +Cn+rC++C  +   +  ++  +l+++ei+ ++  + a  g+  v l+ggep+ + d+ +l++ ++  +    + ++++ng+++  ++l +  +
   EGE27229.1  54 SITDFCNFRCNYCLPNGY-QGKRPNNELTQQEIATLLAGF-AALGTTKVRLTGGEPSIRHDLPDLIRLIKNTE-GIKTACISSNGYKL-GKHLSAWHD 147
                  6899*********99986.99999****************.899******************99999999995.8888899*******.********* PP

                  TT-SEEEEEEBSSSHHHHHHHHTCTSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 100 lgvdrvslgleaaddekvlklmnrghtfeev 130
                  +g+d ++l+++++++ +++k+++  + +  +
   EGE27229.1 148 AGLDKLNLSIDSFNPTTFHKITGYDGLPALL 178
                  **********************764444444 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.7e-13   6.2e-10      15     116 ..      59     158 ..      50     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.7e-13
     Fer4_12  15 CnlsCkgCfnketwsfksgkeftkelleeiiedlkkesiegltllGGEPllpenaeallelvkevkeekpekdiwlytgytleelskkekeellkeidv 113
                 Cn++C++C  +  +  + ++e t++ ++ +++ ++    +++ l+GGEP+ ++  ++l++l+k+ +  k    +++++gy+l +++++  +  l++++ 
  EGE27229.1  59 CNFRCNYCLPNGYQGKRPNNELTQQEIATLLAGFAALGTTKVRLTGGEPSIRHDLPDLIRLIKNTEGIKT--ACISSNGYKLGKHLSAWHDAGLDKLNL 155
                 ***************************************************9999999999998877666..8***********998866666777776 PP

     Fer4_12 114 lvd 116
                  +d
  EGE27229.1 156 SID 158
                 666 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.6e-08   0.00023       7      75 ..      58     124 ..      50     158 .. 0.79
   2 ?   -3.3   0.0       2.7   9.6e+03      71      96 ..     178     202 ..     174     216 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.6e-08
     Fer4_14   7 gCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlk 75 
                  Cn+ C  C+ +  + ++ +++ t++++ + l+ + +      ++ ltGGeP + ++ ++l++l+k+  
  EGE27229.1  58 FCNFRCNYCLPNGYQGKRPNNELTQQEIATLLAGFAALGT--TKVRLTGGEPSIRHDLPDLIRLIKNTE 124
                 5*********998888888888888889899965555555..779********9999999999998754 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.7
     Fer4_14  71 vkrlkeeypekkiwletngtleiele 96 
                 ++ + +   + +i+l+ ng l+ +  
  EGE27229.1 178 LRDIDKLLYSTSITLKLNGILMAH-T 202
                 555555556677888888888733.3 PP

>> GAPES1  Gammaproteobacterial periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.3e-05     0.046     198     253 ..     190     246 ..     179     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.3e-05
      GAPES1 198 laGdlkGivlvdinkdnlknif.ytqdrPllwrflnvtlkdldsgkeiiinqsennl 253
                 ++ +l Gi++     dnl +++ + +drP+ +rf++ + +  +s+     + s++++
  EGE27229.1 190 ITLKLNGILMAHTAYDNLMAALdFVKDRPITYRFIEFMQTSDNSQLFFAEHTSSQHI 246
                 566899************9876599***********999988888777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2823.42
//
Query:       EGE27230.1  [L=218]
Description: two-component system nitrate/nitrite response regulator NarL [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-27   95.2   2.3    3.7e-27   94.7   2.3    1.2  1  Response_reg  Response regulator receiver domain
    3.8e-19   68.0   0.7    6.3e-19   67.3   0.7    1.4  1  GerE          Bacterial regulatory proteins, luxR family
     0.0028   17.4   0.0     0.0063   16.3   0.0    1.6  1  HTH_38        Helix-turn-helix domain
      0.003   17.2   0.0     0.0058   16.3   0.0    1.5  1  Sigma70_r4_2  Sigma-70, region 4
     0.0069   16.2   0.0      0.017   14.9   0.0    1.6  1  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.033   13.7   0.0      0.089   12.3   0.0    1.8  1  Sigma70_r4    Sigma-70, region 4
      0.042   14.0   0.0      0.085   13.0   0.0    1.5  1  DMAP1_like    Putative DMAP1-like
      0.047   13.8   0.0      0.098   12.8   0.0    1.6  1  HTH_28        Helix-turn-helix domain
       0.11   12.3   0.3       0.64    9.9   0.0    2.3  2  HTH_10        HTH DNA binding domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   2.3   1.9e-30   3.7e-27       2     111 ..      15     125 ..      14     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 1.9e-30
                   EEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   2 livdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   l+vdD+p++r++l++ll  e++++++aea++g eal++l++e vdl++lD  mp ++G+e+lk+ire   +++v+++t  ++++d+++al +g+d++
    EGE27230.1  15 LLVDDHPMLRRGLADLLSlEKDVQVIAEANHGMEALDILNQEIVDLVILDHTMPILNGIETLKKIRELGIQTKVLLFTVSDNSKDVQDALHLGVDGY 111
                   89****************999**************************************************************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l K+++pe++++ +
    EGE27230.1 112 LLKDMEPEQIITDI 125
                   **********9876 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.7   3.2e-22   6.3e-19       2      57 .]     158     213 ..     157     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 3.2e-22
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                  L++RE +v +++a+G+snk+I+ +l+i+e TVkvh+++i+ K++++ rve++++a
  EGE27230.1 158 ELTEREIQVAKMIAQGMSNKMIGNKLGIAESTVKVHVKHILGKIGLRTRVEIAVWA 213
                 59***************************************************987 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.2e-06    0.0063      12      41 ..     165     194 ..     155     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.2e-06
      HTH_38  12 eIerllaeGlslreIArrLgrspsTIsREl 41 
                 + ++++a+G+s++ I+ +Lg + sT+  ++
  EGE27230.1 165 QVAKMIAQGMSNKMIGNKLGIAESTVKVHV 194
                 67899********************97555 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.9e-06    0.0058      20      51 ..     168     198 ..     157     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-06
                   HHHHTS---HHHHHHHHT--HHHHHHHHHHHH CS
  Sigma70_r4_2  20 llryleglsykEIAellgisegtVksrlsRAr 51 
                    ++  +g+s k I  +lgi e+tVk +++  +
    EGE27230.1 168 KMI-AQGMSNKMIGNKLGIAESTVKVHVKHIL 198
                   565.59*********************98776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.5e-06     0.017       6      35 ..     162     191 ..     159     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.5e-06
      HTH_23   6 eRlrillllaeGlsvreIAreLgvsrrTvy 35 
                 + ++++++ a+G+s + I  +Lg+ ++Tv 
  EGE27230.1 162 REIQVAKMIAQGMSNKMIGNKLGIAESTVK 191
                 5689************************96 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.4e-05     0.089       5      47 ..     159     200 ..     157     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.4e-05
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrk 47 
                 L+ere +v ++   +g++ + Ig++lgi +++V+ + k  l k
  EGE27230.1 159 LTEREIQVAKMI-AQGMSNKMIGNKLGIAESTVKVHVKHILGK 200
                 666666665554.5788999***************99999887 PP

>> DMAP1_like  Putative DMAP1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.3e-05     0.085      31      86 ..     154     207 ..     125     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.3e-05
  DMAP1_like  31 yaideledkelkikeiinkkqsypnvfLaSslgfskstwnkkvekiLkkfgldkkl 86 
                    +el ++e+++ ++i + +s  n  ++ +lg+  st++ +v++iL k+gl+ + 
  EGE27230.1 154 DSSHELTEREIQVAKMIAQGMS--NKMIGNKLGIAESTVKVHVKHILGKIGLRTRV 207
                 56788999*********87765..7789************************9986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.9e-05     0.098       4      35 ..     165     196 ..     164     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.9e-05
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWikr 35 
                 ++ k +a+G+s + + ++lgi ++tv++ +k 
  EGE27230.1 165 QVAKMIAQGMSNKMIGNKLGIAESTVKVHVKH 196
                 78999*********************999885 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.63   1.2e+03       1      10 [.     159     168 ..     159     169 .. 0.88
   2 ?    9.9   0.0   0.00032      0.64      27      51 ..     177     201 ..     170     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.63
      HTH_10   1 LTdkqlevlk 10 
                 LT+++++v+k
  EGE27230.1 159 LTEREIQVAK 168
                 9*****9986 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00032
      HTH_10  27 keLAkelGIskstlsehLrkaeskl 51 
                 k + ++lGI++st++ h++ +  k+
  EGE27230.1 177 KMIGNKLGIAESTVKVHVKHILGKI 201
                 67999**************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1512.14
//
Query:       EGE27231.1  [L=656]
Description: two-component system nitrate/nitrite sensor histidine kinase NarX [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-15   56.3   0.1    2.9e-15   56.3   0.1    3.1  3  PilJ         Type IV pili methyl-accepting chemotaxis transdu
      8e-14   51.9   3.1    8.2e-13   48.7   3.1    2.8  1  HisKA_3      Histidine kinase
    3.2e-08   34.1   0.1    1.2e-07   32.2   0.1    2.0  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0036   17.6   0.0     0.0095   16.3   0.0    1.8  1  HAMP         HAMP domain
  ------ inclusion threshold ------
      0.025   14.5   0.0       0.07   13.1   0.0    1.7  2  HATPase_c_2  Histidine kinase-like ATPase domain
       0.74   10.0   6.0        0.3   11.3   0.6    2.8  3  DUF3347      Protein of unknown function (DUF3347)
        3.3    7.9   4.8         55    4.0   0.1    3.6  4  MazG         MazG nucleotide pyrophosphohydrolase domain


Domain annotation for each model (and alignments):
>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.1   1.1e-18   2.9e-15       2     108 ..      39     144 ..      38     150 .. 0.91
   2 ?   -1.8   0.1       1.2     3e+03      41      62 ..     232     253 ..     218     279 .. 0.55
   3 ?   -1.2   1.0      0.76   1.9e+03      50      95 ..     444     492 ..     403     506 .. 0.49

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.1e-18
        PilJ   2 llaqsegdaaaINvAGslRMqsqRlakeallaaaga....ydaaearaqlretiaqfdrtlaalrlgdpapgllvpaeavraqleaveqlWqelkkpae 96 
                 l + s++da+a N  Gs RM ++R+ ++++  ++ +    ++ +   +  ++ i++++++l+ l  ++++pg +++  ++ +q + ++++W +++kpa 
  EGE27231.1  39 LAWVSKSDAQALNSVGSIRMATYRINYLLTTNTTLPiddhVKLDPTLSINQQLIDDMQARLNVLYAYQNMPGNKDT--EIDSQTKTIQHHWLKMLKPA- 134
                 5799**********************8888888887*************************************999..9*******************. PP

        PilJ  97 aalaqqddaayl 108
                   l++ d++a l
  EGE27231.1 135 --LVNNDSTAVL 144
                 ..6666666554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
        PilJ  41 aearaqlretiaqfdrtlaalr 62 
                 + ++++ ++ti++ ++ l++  
  EGE27231.1 232 SNSFNDMADTISEHQAKLNQEV 253
                 3444444555555444444443 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.76
        PilJ  50 tiaqfdrtlaalrlgdpapgllvpae...avraqleaveqlWqelkkpa 95 
                   + ++++l  l+ + ++ g  + +    a ++q + ++++ +++++ +
  EGE27231.1 444 LHDSLAQSLSYLKIQLSMLGTHARQLsdaAQQNQNDTLMDHNEAMLQVL 492
                 2223333333332222222222222233356666666666666666666 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   3.1   3.2e-16   8.2e-13       1      64 [.     436     514 ..     436     518 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 3.2e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HH...............HHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpe...............kaaeqlreieelarealqevRrllhnLr 64 
                 ER+ iARELHDs++qsLs++k+ql+++ +++++  +               ++ + l ++++ ++ a+ ++R+ll ++r
  EGE27231.1 436 ERNTIARELHDSLAQSLSYLKIQLSMLGTHARQLSDaaqqnqndtlmdhneAMLQVLGQARSGLDAAYIQLRELLVTFR 514
                 9******************************777667778889999999999999999*****************9999 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   4.6e-11   1.2e-07       2     108 ..     556     649 ..     555     653 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 4.6e-11
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE.....EETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveika.....seddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwve 95 
                  ++ L qii+++++N  ++ ++a+e++v++ +     +e+++ +++ D+G G+pk + +                 + + Gl+i+++ +  +gGe+ ++
  EGE27231.1 556 EQIDLLQIIREALSNIQRH-AYAKEVTVSLYQkthldTEQRIYLEIGDDGVGLPKHIDE-----------------QQHHGLKIMQERTHSLGGEFDIS 636
                 57889**************.9*********9755544338***************5444.................33448******88889******9 PP

                 EETTTEEEEEEEE CS
   HATPase_c  96 sepgrGttftftl 108
                 ++  +Gt +++++
  EGE27231.1 637 QNTPKGTLVRIWF 649
                 99999**999865 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.7e-06    0.0095       2      52 ..     194     243 ..     194     244 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.7e-06
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 l r++lrP++ L +++++ ++G+ +++  v+g  E+ +L  +fN+M+d + 
  EGE27231.1 194 LRRNVLRPIHFLIDSTQHFRRGH-HVPALVTGYQEFQTLSNSFNDMADTIS 243
                 679******************97.777889999***************986 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.2   8.3e+03      20      62 ..     467     517 ..     453     534 .. 0.58
   2 ?   13.1   0.0   2.7e-05      0.07      23      80 ..     551     609 ..     543     631 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.2
  HATPase_c_2  20 rr.aglseelldeirlaveEactNavehayleapegpvevr.......les 62 
                  r+ ++ +++  ++  +  +Ea+  +   a+ +   + +++r       l++
   EGE27231.1 467 RQlSDAAQQNQNDTLMDHNEAMLQVLGQARSGLDAAYIQLRellvtfrLKI 517
                  444555555555555555666666666666666666665554444444444 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.7e-05
  HATPase_c_2  23 glseelldeirlaveEactNavehayleapegpvevr.....lesdeealtvevaDsGpgfdp 80 
                  +ls+++  ++   + Ea++N+ +hay ++     +v+       ++e+++ +e+ D+G g + 
   EGE27231.1 551 NLSANEQIDLLQIIREALSNIQRHAYAKEV----TVSlyqktHLDTEQRIYLEIGDDGVGLPK 609
                  5778888899999*************9544....333335655577778*********98444 PP

>> DUF3347  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   0.00012       0.3      42     103 ..     112     175 ..      86     180 .. 0.76
   2 ?   -0.9   0.0      0.64   1.7e+03     125     147 ..     227     249 ..     211     281 .. 0.73
   3 ?   -0.7   0.1      0.55   1.4e+03      61      80 ..     458     477 ..     385     537 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
     DUF3347  42 eeeekdeklkevlesYlk.lkdALvaddakeakkaakkleeklkavdtskl..kekekkelkeis 103
                 + +e d+++k++ +++lk lk ALv++d++++  a+ k  +++++++++ +  +++++++++++ 
  EGE27231.1 112 KDTEIDSQTKTIQHHWLKmLKPALVNNDSTAVLVASGKYIKEVHELTKK-IqvRSETRQHWQQVL 175
                 34447888999999*99747*************9999999999998444.324888888998875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.64
     DUF3347 125 aFkklsedliklvkafglkekal 147
                 +F++ls+++ +++ + ++++ +l
  EGE27231.1 227 EFQTLSNSFNDMADTISEHQAKL 249
                 56666666666666555555433 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.55
     DUF3347  61 kdALvaddakeakkaakkle 80 
                 + ++  + a + ++aa++ +
  EGE27231.1 458 QLSMLGTHARQLSDAAQQNQ 477
                 44444444444444433332 PP

>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.2     3e+03      12      69 ..     152     164 ..     149     170 .. 0.61
   2 ?    3.7   0.1     0.028        72      23      50 ..     397     424 ..     388     431 .. 0.81
   3 ?    4.0   0.1     0.021        55      24      46 ..     435     457 ..     421     477 .. 0.81
   4 ?   -2.1   0.0       1.8   4.5e+03      37      66 ..     488     517 ..     487     519 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
        MazG  12 eEvgEvaeaIkkedrdeleeELGDvLlqvlflaniaeeeggidledvaetileKlerR 69 
                 +Ev E+  +I+                                              R
  EGE27231.1 152 KEVHELTKKIQ---------------------------------------------VR 164
                 56666666665.............................................33 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.028
                 TT-HHHHHHHHHHHHHHHHHHHHHHHHH CS
        MazG  23 kedrdeleeELGDvLlqvlflaniaeee 50 
                 +ed+ ++++EL  vL+ +++l+ + +++
  EGE27231.1 397 EEDDTTITKELVQVLVSLVSLVFTIQKQ 424
                 58899*************9998877765 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.021
                 T-HHHHHHHHHHHHHHHHHHHHH CS
        MazG  24 edrdeleeELGDvLlqvlflani 46 
                 e+r+++++EL D L q l++ +i
  EGE27231.1 435 EERNTIARELHDSLAQSLSYLKI 457
                 7899**************99987 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHH---HHHHHHHHHHHH CS
        MazG  37 LlqvlflaniaeeeggidledvaetileKl 66 
                 +lqvl +a+++ + ++i+l + + t+  K+
  EGE27231.1 488 MLQVLGQARSGLDAAYIQLRELLVTFRLKI 517
                 589999****99*******99988877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1638  (0.0913604); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4445.49
//
Query:       EGE27232.1  [L=423]
Description: putative nitrate/nitrite transporter NarK2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-38  133.0  71.3    5.1e-38  130.9  47.8    1.9  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.014   14.9   4.2      0.052   13.0   1.8    2.5  2  SieB      Super-infection exclusion protein B


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9  47.8   5.7e-42   5.1e-38       4     353 .]      14     372 ..      12     372 .. 0.85
   2 !   16.0  15.5   4.9e-07    0.0044      84     181 ..     306     413 ..     280     420 .. 0.70

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 5.7e-42
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagal 102
                 +af ++++ ++ +++l + ++++l ++++++gll+++  l+ ++  lplG ++d++G r v+++ +l+++l ++l+ +a ++w +l+l ++ Gl  g++
  EGE27232.1  14 VAFTICFMTWMMFAVLGIPIQQALDLNETQFGLLAATPVLTGSLVRLPLGIMTDKYGGRIVFFVLMLATVLPIFLMGYADQYWQFLLLGLFVGLS-GGS 111
                 4566667777777777779*****************************************************5555588***************9.8** PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslg..........Wravfyilaivsllafvlfllllpeepperkrkspkeeekgt 191
                 f++g+a++a+wf  +++g+a+g+++ag+ +G++++ ++g++++ ++g          Wr +  + a+++l+ ++ +++++  +++++++ s +++    
  EGE27232.1 112 FSVGIAYVAKWFEADKQGFAMGVFGAGN-AGSAITKMIGPAII-AVGastaasaaegWRFLPKVYAGIMLITAI-GFWFFSYDNKTHRTASNATL---- 203
                 *************************944.44444444444444.2233455568888**************988.55999999999999988888.... PP

       MFS_1 192 gpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalg 290
                      ++   a+lkd+ +w +     ++f g+ +l  +++ y +  +g+s l +a++l a ++l g +l+ l+g+lsd++++++ +++ l + +l++++
  EGE27232.1 204 -----AS-QLAVLKDKNVWRYSQYYSIVFGGYVALALWMTKYYVGEYGFS-LQTAAFLAACFSLPGGVLRALGGWLSDKYSAHTVTWWVLWSSFLLLFA 295
                 .....34.577889999**56666666666********************.999999999*******************99988888888888888888 PP

       MFS_1 291 lallavt...............ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 l +  ++                +a+++ ++++l+G+++++  +s++ ++sd + ++++g++sg++++ag+lgg++ p
  EGE27232.1 296 LSYPQTFltiqtvegeksfyigLNAIVFTVLIFLLGIAFAIGKASVFKYLSDEY-KDNMGAVSGVVGLAGGLGGFILP 372
                 888888878889**98888887777777779999********************.6*******************976 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.9e-07
       MFS_1  84 s............lw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav.fyilaivsllafvlf 168
                 +               ++ vl +l G++ +++ +++  +++d +++ + g + g+++++ +lG  + p+  g+ ++  g r++ f+i+ +v  ++++  
  EGE27232.1 306 QtvegeksfyiglNAiVFTVLIFLLGIAFAIGKASVFKYLSDEYKD-NMGAVSGVVGLAGGLGGFILPIMFGAAVDITGIRSSaFMIMFGVVWVSLI-- 401
                 133344444444333359***************************9.********************************998868888888888855.. PP

       MFS_1 169 llllpeepperkr 181
                  + ++ e +++  
  EGE27232.1 402 -WIYLSEVKPKIE 413
                 .555444444443 PP

>> SieB  Super-infection exclusion protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.8   5.8e-06     0.052       2      58 ..     282     341 ..     281     355 .. 0.73
   2 ?    1.1   0.0     0.028   2.5e+02      38      71 ..     388     421 ..     386     422 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.8e-06
        SieB   2 laLiiasglllllPdsllekln.lgkfleeyglwiglvflis..iayllaqvvskllaei 58 
                  +++++s++lll+  s+++++  ++ ++ e+ ++igl ++++  + +ll +++  + a +
  EGE27232.1 282 TWWVLWSSFLLLFALSYPQTFLtIQTVEGEKSFYIGLNAIVFtvLIFLLGIAFAIGKASV 341
                 599****************9877**************99999332333444444333333 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.028
        SieB  38 vflisiayllaqvvskllaeikekikkkreqkkv 71 
                 +f i+++ + +++++  l e+k ki+++++ k+ 
  EGE27232.1 388 AFMIMFGVVWVSLIWIYLSEVKPKIEQDHQSKTL 421
                 688999999*****************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3106.30
//
Query:       EGE27233.1  [L=448]
Description: nitrate transporter NarK1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-17   63.9  63.8    2.8e-17   62.7  54.0    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7  54.0   1.6e-21   2.8e-17       6     353 .]      41     408 ..      36     408 .. 0.78
   2 !    2.8   9.1    0.0026        47     124     176 ..     391     443 ..     380     447 .. 0.73

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1.6e-21
       MFS_1   6 flsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa.....sslw.lllvlrvlqG 96 
                 +l a++ +++++++   +    ++++++++++ll+l al  a + l++++l+  fG rr+  l+ +++++  ++l+l a     + ++ ++++  +l+G
  EGE27233.1  41 LLLAFSVWVIWSVIVVrMPEVGFQFDKAQLSWLLALPALSGATMRLFYAFLVPVFGGRRWTTLSTASLLIPtIWLGL-AiqnpeT-SFtTFAIIALLCG 137
                 55666666666666665556678899*****************************9777666666666666245555.4467744.555********** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailg.pllgglla.sslg................Wravfyilaivsllafvlfllllpeepp 177
                 +g ga f+++++ i+  +pk+++g+a+gl ++  +lG+ +   ++  ++  s++g                 + + ++  i  +++ vl  +++  ++ 
  EGE27233.1 138 FG-GANFSSSMSNISFFYPKSKQGMALGLNAGLGNLGVSVLqFVVPVIIGfSLFGalagdgqvtesgkvlyLQNAAFVWVIPIAIMTVL--AWFGMNDL 233
                 **.8**********************************77736666666678888****************888888888888888888..9**99999 PP

       MFS_1 178 erkrkspkeeekgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgr 273
                 ++++ s ke+             ++++++++ w ++++ l++f+  f g+++ +p+  +    ++    l ++    l+ lvga +++++g+lsd++g 
  EGE27233.1 234 SNAKASFKEQ-------------SIIFRRQHNWiMCILYLATFG-SFIGFSAAFPM--VIKQSFPeiDPLKVA---FLGPLVGALFRPVGGWLSDKVGG 313
                 9999999999.............89********65555555555.77779999999..888889955335566...5666666666************* PP

       MFS_1 274 rrrlllallllllaalglallavt...ssavllll...vlvl.iGfglgfvfpsllalasdlapp...........eeagtasglfntagslggalgp 353
                  + ++++++++++a+++++++      +    + +   +l++  G+g g +f ++ ++   ++ +           +e+++++g+   + + gg++ p
  EGE27233.1 314 ACVTFWNYIIMTIAVIAVMFFLKNgnfT---GYFAgfmLLFItTGIGNGSTFRMIPVIFRTMHERlhspdaitqarKESAAVVGFSAGFAAYGGFFIP 408
                 *******************999884443...3333433333359999999977777777666644444456666667777888888888888888766 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0026
       MFS_1 124 gllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 ++++ +++++a  g  +  ++ s lg  ++f++l +++++++ l ++++ +++
  EGE27233.1 391 AVVGFSAGFAAYGGFFIPKMFGSGLGVNGTFLVLIAFYIICIALTWWYYSRRN 443
                 44444555555555666677778889*****************9999997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3242.91
//
Query:       EGE27234.1  [L=41]
Description: IS1016 transposase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.074   13.4   0.0      0.074   13.4   0.0    1.1  1  CENP-X    CENP-S associating Centromere protein X


Domain annotation for each model (and alignments):
>> CENP-X  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.1e-06     0.074      25      44 ..      11      30 ..       1      39 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.1e-06
                HHHHHHHHHHHHHHHHHHHH CS
      CENP-X 25 elvaeylklFvrEavaRaae 44
                ++ +++l+ Fv Ea aR+a+
  EGE27234.1 11 KVQKRLLEFFVLEATARSAA 30
                566789************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 342.40
//
Query:       EGE27235.1  [L=263]
Description: putative molybdopterin biosynthesis protein MoeB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-49  166.1   0.1    1.1e-48  165.8   0.1    1.0  1  ThiF          ThiF family
  ------ inclusion threshold ------
       0.15   11.8   0.4       0.82    9.4   0.1    2.1  2  YdjO          Cold-inducible protein YdjO
       0.16   12.0   0.1       0.38   10.8   0.1    1.7  1  Shikimate_DH  Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   0.1   1.8e-52   1.1e-48       1     240 [.      21     254 ..      21     260 .. 0.91

  Alignments for each domain:
  == domain 1  score: 165.8 bits;  conditional E-value: 1.8e-52
                 THHHHHH.HHH.HHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-C CS
                 xxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlal.lge.dgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteri 97 
                 ysrq+ l  ++ ++q k+++s+v l+G+GglG+ ++  L+++Gvg+++l+D+D+++ sNl+Rq l++++diG pKa+ a++al e n+++ v  ++  +
  EGE27235.1  21 YSRQILLdGWDiESQLKIKQSSVSLIGMGGLGCMVAPILVRAGVGEVHLFDFDTVDDSNLQRQLLYTQADIGLPKAQIAKQALIEQNSWAAVHSHNIAL 119
                 899998885556*************************************************************************************** PP

                 CGCCS-HHHHTT-.SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHHHHHCTE-B-HHHHHH CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  98 tdetvleellesv.DlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplctsiagnipaiatttav 195
                 +d+t+ e+l++   Dl +d++Dn+++r  +nr  +  ++ l++ ++ g  gqv  ++p+ktgcy Cl+  s +      +++c ++ g   ++a+t+av
  EGE27235.1 120 NDDTIKENLISIKsDLWIDCSDNFDIRQTLNRHSIITSTALLSLSAIGETGQVALFEPKKTGCYACLFGTSMRA-----AQNC-ATSG---VLASTVAV 209
                 **998888887445*********************9999****************************9744444.....4455.5566...7******* PP

                 HHHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEEECCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 196 vaglaalellkllsgkeklenslltqvdllesrfenvelerakks 240
                 ++ l a  +l++l + +++ + +l   ++ + +f+++++ +++ +
  EGE27235.1 210 IGALGADIALHFLGKDQNTLKDTLMVWQGSRANFQKMKFTKNPSC 254
                 *************888888888888**************888854 PP

>> YdjO  Cold-inducible protein YdjO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.19   1.2e+03      37      55 ..       6      24 ..       2      26 .. 0.76
   2 ?    9.4   0.1   0.00014      0.82      34      48 ..     246     260 ..     236     262 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.19
        YdjO 37 eeePtCplCkseMvkevrm 55
                + +P+  lC++e+ + +r 
  EGE27235.1  6 KPHPKTELCDAELMRYSRQ 24
                6689999**9998877665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00014
        YdjO  34 FsfeeePtCplCkse 48 
                  +f ++P+Cp+C+++
  EGE27235.1 246 MKFTKNPSCPICQKS 260
                 2699********986 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.3e-05      0.38       9      56 ..      37      84 ..      31     160 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.3e-05
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel 56
                  ++k++ v liG G ++  va  L+++gv +v  +  +    ++l ++l
    EGE27235.1 37 KIKQSSVSLIGMGGLGCMVAPILVRAGVGEVHLFDFDTVDDSNLQRQL 84
                  58999*************************998876666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2082.12
//
Query:       EGE27257.1  [L=81]
Description: putative Fis family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-16   58.8   0.0    4.3e-16   58.4   0.0    1.2  1  HTH_8       Bacterial regulatory protein, Fis family
  ------ inclusion threshold ------
      0.013   15.3   1.2      0.022   14.6   0.6    1.6  2  HTH_30      PucR C-terminal helix-turn-helix domain
      0.028   14.5   0.1      0.063   13.4   0.0    1.5  2  HTH_28      Helix-turn-helix domain
      0.053   13.4   0.3      0.085   12.7   0.0    1.5  2  Phage_NinH  Phage NinH protein
      0.085   12.5   0.0       0.13   11.9   0.0    1.3  1  HTH_50      Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   1.2e-19   4.3e-16       2      40 ..      38      76 ..      37      78 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.2e-19
                HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHH CS
       HTH_8  2 leevEkelIeaALertgGnkskAArlLGisRrtLyrKLk 40
                l+e+Ek l++aAL++t+Gn+sk+A++LGi+R tL+ K+k
  EGE27257.1 38 LAEFEKPLLIAALNHTHGNQSKTAQILGINRGTLRTKMK 76
                89************************************9 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.96   3.4e+03      14      22 ..      13      21 ..      12      25 .. 0.71
   2 ?   14.6   0.6     6e-06     0.022       9      34 ..      51      76 ..      45      79 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.96
                -HHHHHHHH CS
      HTH_30 14 nisatAkaL 22
                ++++tAk+ 
  EGE27257.1 13 QVEQTAKRY 21
                567888874 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6e-06
                HHTTT-HHHHHHHHTS-HHHHHHHHH CS
      HTH_30  9 lenggnisatAkaLhvHrnTlryRLr 34
                 +++gn s+tA+ L++ r Tlr  ++
  EGE27257.1 51 NHTHGNQSKTAQILGINRGTLRTKMK 76
                4788******************8876 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   4.2e+03      33      42 ..      19      28 ..      11      32 .. 0.53
   2 ?   13.4   0.0   1.8e-05     0.063       7      30 ..      48      72 ..      45      74 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
      HTH_28 33 ikryeegGia 42
                 + +e+ G+a
  EGE27257.1 19 KRYFETLGDA 28
                3345667766 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.8e-05
      HTH_28  7 kllaaGh.svreaArelgisrrtvy 30
                 +l + h +++ +A++lgi+r t++
  EGE27257.1 48 AALNHTHgNQSKTAQILGINRGTLR 72
                33445568***************98 PP

>> Phage_NinH  Phage NinH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         2   7.3e+03      32      39 ..      17      24 ..      15      34 .. 0.54
   2 ?   12.7   0.0   2.4e-05     0.085      12      35 ..      50      73 ..      45      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
  Phage_NinH 32 tvRkYvrD 39
                t ++Y + 
  EGE27257.1 17 TAKRYFET 24
                55666543 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.4e-05
  Phage_NinH 12 LvetyGnqtEvARrlkcsRatvRk 35
                L  t+Gnq   A  l  +R+t+R 
  EGE27257.1 50 LNHTHGNQSKTAQILGINRGTLRT 73
                6689******************96 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.6e-05      0.13       7      46 ..      37      77 ..      31      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
      HTH_50  7 yveefErelikkaye.kYpStRklAkrLGvShtaianklrk 46
                 ++efE+ l+++a++ +++   k A+ LG+   +   k++ 
  EGE27257.1 37 FLAEFEKPLLIAALNhTHGNQSKTAQILGINRGTLRTKMKT 77
                6899****999988538*****************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 644.71
//
Query:       EGE27258.1  [L=310]
Description: ribosomal protein L11 methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-77  261.1   0.0    1.6e-77  260.9   0.0    1.0  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    2.3e-08   33.8   0.0    4.2e-08   32.9   0.0    1.4  1  MTS              Methyltransferase small domain
    5.8e-07   29.4   0.0    9.4e-07   28.7   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    7.6e-06   26.5   0.0    1.5e-05   25.6   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.4e-05   24.8   0.0    2.5e-05   24.0   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
    0.00074   19.3   0.0      0.001   18.9   0.0    1.2  1  Met_10           Met-10+ like-protein
    0.00098   18.4   0.0     0.0014   17.9   0.0    1.1  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
     0.0052   16.6   0.0      0.012   15.5   0.0    1.7  1  Methyltransf_23  Methyltransferase domain
     0.0078   16.8   0.1      0.016   15.8   0.1    1.6  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.035   14.1   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.024   14.4   0.0      0.035   13.8   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.071   13.0   0.0       0.13   12.2   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
      0.078   13.7   0.0       0.14   13.0   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
      0.086   12.5   0.0       0.51   10.0   0.0    1.9  2  N6_N4_Mtase      DNA methylase
       0.12   11.3   0.0       0.16   10.9   0.0    1.2  1  Methyltransf_9   Protein of unknown function (DUF1698)
       0.13   12.2   0.0       0.18   11.7   0.0    1.2  1  AAA_31           AAA domain
       0.13   11.8   0.0       0.17   11.4   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
       0.21   10.5   0.0       0.58    9.1   0.0    1.6  2  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
       0.23   10.6   0.0       0.25   10.4   0.0    1.2  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera


Domain annotation for each model (and alignments):
>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.9   0.0   1.7e-80   1.6e-77       1     279 [.       2     285 ..       2     304 .. 0.90

  Alignments for each domain:
  == domain 1  score: 260.9 bits;  conditional E-value: 1.7e-80
        PrmA   1 kwlelsvttkkeaeeavsniLeelgakgvaiedsklleeedifepaleeeelkeevkvkalfkeeteakeliaqlke...se.lglekgkvkveeveee 95 
                 +w++l++++ k+a+e +++++ e+ga ++ +ed+    +e++fep +++e+l+++v v+a+f+++++     ++ ++   ++  +++ +++ +++++++
  EGE27258.1   2 SWQQLHLQCPKSAVELAEALFDEAGAVSILLEDAG---DEPLFEPMPGDEPLWSDVVVTAIFDTNSDDSWAGTHFENlaaKIaSEVNATRFWLTSLDDK 97 
                 5********************************99...*************************888766544444441104323344556666****** PP

        PrmA  96 dWaeewkkyykPvrigerltivpsweeypeeeeelvieldpGlAFGTGtHpTTklclealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDe 194
                 dW +ew++yy+P++ + +l+ivp+w   p+ + ++++ ldpGlAFGTG H+TT+lcl +l ++  +++ v+D+G+GSGiL +aa++Lga++v+avDiD+
  EGE27258.1  98 DWTREWMSYYQPIQCAGNLWIVPEWLPAPD-PAAINLILDPGLAFGTGYHATTRLCLDWLAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDP 195
                 ****************************99.99****************************************************************** PP

        PrmA 195 vAvkvakeNaelNkveaklevalseellk.....eekadvivaNILaevlielaedikklvkeggllilSGilkekaeevaealeqgfel 279
                 +Av ++++Na+lN+v+++l  +l++e  +      + advi aNILa++li +a+ +  l+k+ggl++l G+ ++++++v++a++   +l
  EGE27258.1 196 QAVLATRQNAALNGVDDRLLAFLPAEFDDyrtqnPQLADVITANILAKPLIGFAPLFHDLLKTGGLIVLAGLTQNQTQAVIDAYSPYVTL 285
                 *****************998888877764434445779**********************************************976555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   4.5e-11   4.2e-08      18      83 ..     147     216 ..     131     239 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4.5e-11
                 HHHHHHHHHCHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EE CS
         MTS  18 kGsklLletlpke..lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...ve 83 
                 + ++l l+ l ++   ++ v+D GcG G+lg+a++    + +v +vd+d +A+ ++++n++ n+++   + 
  EGE27258.1 147 ATTRLCLDWLAAQelSDKLVIDYGCGSGILGVAALLLGAR-QVLAVDIDPQAVLATRQNAALNGVDdrlLA 216
                 6799999999999866667*************99998777.8**********************9966533 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0     1e-09   9.4e-07       4     109 ..     163     264 ..     160     298 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1e-09
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld..nveFeqgdieeleklledekfDlilsnevlnaladpdkile 95 
                      ++ v+D+GCG+G l+ ++  +lg   +v  +Di+++a+   r+na+ +g+d   + F  +++ +  ++ +++  D+i++n    + + +  +  
       EGE27258.1 163 DKLVIDYGCGSGILGVAAL-LLG-ARQVLAVDIDPQAVLATRQNAALNGVDdrLLAFLPAEFDDYRTQ-NPQLADVITAN---ILAKPLIGFAP 250
                      6679********9999999.655.699************************88899999*****7764.56889**9998...22333333444 PP

  Methyltransf_31  96 eiervlkpggilli 109
                        +++lk+gg +++
       EGE27258.1 251 LFHDLLKTGGLIVL 264
                      55555555555554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.5e-08   1.5e-05       1      71 [.     166     239 ..     166     260 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.5e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBSS.STTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedlpf.edgsfDlvvss 71 
                      v+d GcG+G l  a++   g+ +v++vDi+++++ a+r++a+ +g+    + f+ ++++d+   + +  D+++++
       EGE27258.1 166 VIDYGCGSGILGVAALLL-GARQVLAVDIDPQAVLATRQNAALNGVddrLLAFLPAEFDDYRTqNPQLADVITAN 239
                      89*******999998866.79********************9999988778899999999875155567777773 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.6e-08   2.5e-05      34     107 ..     154     228 ..     149     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.6e-08
                    HHHCCC.HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS CS
  Cons_hypoth95  34 nilaae.iegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallkl 107
                    ++laa+ + ++ v+D  +GsG lg+ Al  ga+++++v+ d++av + ++n +  +++++  ++   ++++++++
     EGE27258.1 154 DWLAAQeLSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVDDRLLAFLPAEFDDYRTQ 228
                    677766699*******************************************99998887777766666666555 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.1e-06     0.001     100     157 ..     162     218 ..     154     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.1e-06
                 TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEE CS
      Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpil 157
                  +++V+d   G G + +++     a++vla+d++P++v   ++n +lN v++++ ++l
  EGE27258.1 162 SDKLVIDYGCGSGILGVAALL-LGARQVLAVDIDPQAVLATRQNAALNGVDDRLLAFL 218
                 5678999999******99986.56788************************9987765 PP

>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.5e-06    0.0014      96     181 ..     134     220 ..     110     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.5e-06
  Methyltrans_SAM  96 qldigrnqnfglfldmrlgrdwvqena.kdknvlnlfaytcg...fsvaaiaggaskvvnvdmargslnkgrdnhrlnghdlrrvsflgy 181
                       ld g    +g     rl  dw+  +   dk v+    y cg   + vaa+  ga++v+ vd+   ++   r+n  lng d r ++fl  
       EGE27258.1 134 ILDPGLAFGTGYHATTRLCLDWLAAQElSDKLVI---DYGCGsgiLGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVDDRLLAFLPA 220
                      5777777888999999999999976651555555...466663336899999*****************************999999865 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-05     0.012      18      62 ..     158     216 ..     145     282 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-05
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae.............k 62 
                      + + +++ v+d+GcG+Gil   +   g+ +v +vD++p+av   +              
       EGE27258.1 158 AQELSDKLVIDYGCGSGILGVAALLLGArQVLAVDIDPQAVLATRqnaalngvddrllA 216
                      44667788**********988888889989********998876666666665444332 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.7e-05     0.016       2      67 ..     168     238 ..     167     264 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-05
                      EET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCT.SS-TT-EEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl...kvefvvadaekl.pfednsfDlvvs 67 
                      d GcG+G+l  a    g ++v++vD++++++ + +++a  +g+    + f+ a++ +    + +  D++++
       EGE27258.1 168 DYGCGSGILGVAALLLGaRQVLAVDIDPQAVLATRQNAALNGVddrLLAFLPAEFDDYrTQNPQLADVITA 238
                      99******9999998999*************7777777777766555667777666652233355566655 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.7e-05     0.035      22      74 ..     159     208 ..     146     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.7e-05
  Methyltransf_32  22 kesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraekl 74 
                      +e +++ v+D G+G g L+ +  l       +v+++d+  + v ++++ a+  
       EGE27258.1 159 QELSDKLVIDYGCGSGILGVAALL---LGARQVLAVDIDPQAVLATRQNAALN 208
                      5667889*************9999...67889*********999998877654 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.7e-05     0.035      40      93 ..     156     209 ..     143     276 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.7e-05
  Methyltransf_16  40 lganelsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnk 93 
                      l a+els++ v++ G G+G+ G+a+ +l +  +v+  D++  ++   ++n +ln+
       EGE27258.1 156 LAAQELSDKLVIDYGCGSGILGVAALLL-GARQVLAVDIDPqAVLATRQNAALNG 209
                      5678999***************998777.99999999998746666778888865 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00014      0.13      15      72 ..     163     219 ..     153     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrls 72 
                      ++ v+D G+  g+l ++++  g a++v+a+Di ++++ + ++n++ +g++d++ + l 
       EGE27258.1 163 DKLVIDYGCGSGILGVAALLLG-ARQVLAVDIDPQAVLATRQNAALNGVDDRLLAFLP 219
                      6789*************99876.679***********************998876665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00014      0.14       2      72 ..     168     238 ..     167     262 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00014
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvva 72 
                      + GcG+G l  a l      ++++vDi+p+a+  a ++ a+ ++ +   + +   + +d   +  +  D+++a
       EGE27258.1 168 DYGCGSGILGVAALLL-GARQVLAVDIDPQAV-LATRQNAALNGVDDRLLAFLPAEFDDYRTQnpQLADVITA 238
                      78*****998888887.666777*********.7777777777666666666666555444445566666666 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00054      0.51     192     227 ..     163     199 ..     148     203 .. 0.85
   2 ?   -0.0   0.0      0.63   5.9e+02      38      65 ..     248     274 ..     228     296 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00054
                  T-EEEETT-TTTHHHHHHHHTT-EEEE.EESSHHHHH CS
  N6_N4_Mtase 192 gdivlDpFaGSGtTavaakelgrkfiG.ieieeeyve 227
                  +++v+D+ +GSG  +vaa+ lg + +  ++i++++v 
   EGE27258.1 163 DKLVIDYGCGSGILGVAALLLGARQVLaVDIDPQAVL 199
                  899******************9886666***999875 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.63
                  HHHHHHHHEEEEEEEEEEE-CCCHHTHH CS
  N6_N4_Mtase  38 vlkevrrvLkddgsifiniddseikkel 65 
                  ++ + +++Lk++g i++    +++++ +
   EGE27258.1 248 FAPLFHDLLKTGGLIVLAGLTQNQTQ-A 274
                  55677999********9998888876.3 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00017      0.16     113     157 ..     160     206 ..     153     282 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
                     --TT-EEEEET-TTSHHHHH..HHHCT-SEEEEE---HHHHHHHHHH CS
  Methyltransf_9 113 dlkgrtildvGcgnGyhlwr..mvgegaklvvGidPselfliqfeav 157
                     +l ++ ++d Gcg+G       ++g+   l+v idP+ +  +  +a 
      EGE27258.1 160 ELSDKLVIDYGCGSGILGVAalLLGARQVLAVDIDPQAVLATRQNAA 206
                     799************98766115566666677888887665555443 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.18      30      88 ..     185     240 ..     174     288 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
      AAA_31  30 gkkvLlvDlDpQanattglgiekneiektlyevlieeknikeaiiktkvenl.dlipssi 88 
                   +vL vD+DpQa ++t+ +   n ++ +l+  l   ++ +++ +  ++ +l d+i ++i
  EGE27258.1 185 ARQVLAVDIDPQAVLATRQNAALNGVDDRLLAFLP--AEFDDYRT--QNPQLaDVITANI 240
                 468**************999999999999999973..44444444..2223335555555 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018      0.17       3      55 ..     165     218 ..     163     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
  Methyltransf_15   3 vilDlfsGaGGnvi.qfalvfekviaieinleklacaqhNaevYgvsdkitlvl 55 
                      +++D  +G+G   + ++ l  ++v a++i+++ +  + +Na + gv+d++   l
       EGE27258.1 165 LVIDYGCGSGILGVaALLLGARQVLAVDIDPQAVLATRQNAALNGVDDRLLAFL 218
                      68999999996444044455789*************************987655 PP

>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4   1.3e+03     107     135 ..      52      81 ..      49      86 .. 0.77
   2 ?    9.1   0.0   0.00062      0.58     198     259 ..     159     221 ..     142     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
  tRNA_U5-meth_tr 107 gellvsllyhkklddewk.eaaealkdkle 135
                       +++v+ ++  + dd+w  ++ e+l++k+ 
       EGE27258.1  52 SDVVVTAIFDTNSDDSWAgTHFENLAAKIA 81 
                      6899*************8245677877665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00062
  tRNA_U5-meth_tr 198 tqeskgdllelycGnGnfsla.larnfekvlateiakssveaaqyniaankidnvqiirlsae 259
                       + s++ +++  cG G + +a l    ++vla +i   +v a++ n a n +d+  ++ l ae
       EGE27258.1 159 QELSDKLVIDYGCGSGILGVAaLLLGARQVLAVDIDPQAVLATRQNAALNGVDDRLLAFLPAE 221
                      333344456677****99885378889**************************9877777665 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027      0.25      53     102 ..     166     213 ..      62     224 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                 EEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--GG CS
         TRM  53 vldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneveei 102
                 v+d   +sG+ ++  +l   g+++vla Di ++Av   ++N+ ln v+++
  EGE27258.1 166 VIDYGCGSGILGVAALLL--GARQVLAVDIDPQAVLATRQNAALNGVDDR 213
                 566677899988877765..99*************************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2309.45
//
Query:       EGE27259.1  [L=940]
Description: acid phosphatase autotransporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-12   47.2   0.0    3.5e-12   46.2   0.0    1.4  1  PAP2             PAP2 superfamily
     0.0023   18.0   0.5     0.0023   18.0   0.5    3.0  3  PATR             Passenger-associated-transport-repeat
  ------ inclusion threshold ------
      0.069   13.0   0.0       0.92    9.4   0.0    2.6  2  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   5.9e-16   3.5e-12      17     117 ..     146     242 ..     124     250 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 5.9e-16
        PAP2  17 svlKdlvgrpRPfflaeetkldtqvstletses.....keakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlylgvHfl 110
                  +lKd + r RP+++++ ++++   +++ + +       + ++s+PSgH++++f  a+++a+ ++++ +          ++  a+  + sR+++g+Hf+
  EGE27259.1 146 FILKDKYLRGRPYQVMDREGNYIEGYENLKTYIdsqgrERKNSSYPSGHTSNGFGQAVVMAMAFPERGQE---------VFSRALQYGESRVIVGAHFP 235
                 479********************9887766555999988888888*************************.........9******************* PP

        PAP2 111 sDvlaGl 117
                 +D++++ 
  EGE27259.1 236 TDTMTSR 242
                 ***9986 PP

>> PATR  Passenger-associated-transport-repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.58   3.5e+03       4      11 ..     415     422 ..     415     424 .. 0.85
   2 !   18.0   0.5   3.9e-07    0.0023       7      26 ..     426     444 ..     425     447 .. 0.81
   3 ?    0.8   0.1     0.094   5.6e+02       8      29 ..     445     466 ..     443     467 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.58
        PATR   4 tGaGTLtL 11 
                 +G+G L+L
  EGE27259.1 415 SGTGRLIL 422
                 59*****9 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 3.9e-07
        PATR   7 GTLtLtGaNtYtGgTtvsaG 26 
                 G LtL+G+Nt++G+T v++G
  EGE27259.1 426 GELTLSGNNTFAGAT-VKQG 444
                 89***********55.5555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.094
        PATR   8 TLtLtGaNtYtGgTtvsaGTLa 29 
                  L +tG+N  +    +++GT +
  EGE27259.1 445 HLKFTGNNALADDSYINQGTMS 466
                 577899999999999****965 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00015      0.92       1      61 [.      14      74 ..      14      79 .. 0.92
   2 ?   -0.0   0.0      0.14   8.2e+02      28      54 ..     409     435 ..     407     437 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00015
  HU-CCDC81_bac_2  1 GLLansiaeaegisyeeAlqkiekeveelkqeLeeegrveleniGeLslneegkleFepse 61
                     +LL+++ a a++  +++ ++ki+ + +++ q+L+ +    +++ G+L    ++k++ +  +
       EGE27259.1 14 SLLMSHQAYAHDEAFDKLSTKIAGQSQSWYQHLDAQVVTPFPKKGTLEAEVDRKISWDMQN 74
                     69****************************************************9987754 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.14
  HU-CCDC81_bac_2  28 elkqeLeeegrveleniGeLslneegk 54 
                      ++k+ +  +gr+ l+  GeL+l+ +++
       EGE27259.1 409 TWKNDISGTGRLILNHPGELTLSGNNT 435
                      799999**************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 6469.83
//
Query:       EGE27260.1  [L=814]
Description: penicillin-binding protein 1B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-60  203.7   0.0    2.4e-60  203.1   0.0    1.3  1  Transgly        Transglycosylase
    4.1e-25   88.6   0.2    1.1e-24   87.2   0.2    1.7  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    9.2e-17   60.9   0.0    2.2e-16   59.6   0.0    1.7  1  UB2H            Bifunctional transglycosylase second domain
     0.0093   16.1   0.0      0.026   14.7   0.0    1.8  1  UvrB_inter      UvrB interaction domain


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.1   0.0   5.3e-64   2.4e-60      12     177 ..     181     350 ..     171     351 .. 0.97

  Alignments for each domain:
  == domain 1  score: 203.1 bits;  conditional E-value: 5.3e-64
    Transgly  12 enrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklekklsKdeILea 110
                 e+r l++ e+ip+ l++a++a+EDr+Fy+h+G++++g+arA+++nl++g+++qGgSTitqQl+kn++l++ertl+rK++ea++A+ le+++sKdeIL a
  EGE27260.1 181 EDRLLITQEQIPKPLVDALIATEDRNFYQHHGISMRGVARALFTNLTGGQVQQGGSTITQQLIKNFYLDSERTLKRKINEALMAVLLETHYSKDEILLA 279
                 67888999******************************************************************************************* PP

    Transgly 111 YlNsvylgr....evyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlerm 177
                 Y+N+++lg+     v+G++ Aa++yF+k+  +L+l++ alL+gl k Ps+ynp +npe+a +rr++vl++m
  EGE27260.1 280 YMNEINLGQngkqSVNGFGIAAQFYFDKPLGELSLEQYALLVGLAKGPSHYNPRKNPERALQRRNTVLNSM 350
                 ********879999*******************************************************99 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.2   2.4e-28   1.1e-24       1     283 [.     444     689 ..     444     714 .. 0.84

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 2.4e-28
                     EEEEEEETTT-BEEEEEEESE-TTTHHCCTCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-...SSS CS
  Transpeptidase   1 gaavvldaktgevlamaskpsydpnakvgkneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdn...kgs 92 
                     ga v  ++ tge +a++++ s+    ++g      nra++ + + GS  K+v+ ++a+++g ++  + ++d +  +  +   ++w+ +n   + +
      EGE27260.1 444 GALVSAHPATGELVALVGSGSD----FTG-----FNRAIDAKRQVGSLLKPVIYLTAFQSGQYNLTTPVNDTQTSYTVN--GRSWTPKNyggQSH 527
                     6778899************863....444.....799****************************99999888776654..46666666665788 PP

                     SEEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE--BS CS
  Transpeptidase  93 egitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiGltvtplqlaqayaaiangGklvkPhl 187
                     + + l +al+kS n + v++  +lg d ++  l+++ + +    d p   +       + ga       + ++p+q++ +y+ +angG +++ h 
      EGE27260.1 528 GSVPLLTALAKSYNQAAVNVGMQLGLDAFKAQLGNLSITT----DVPPYPSA------MLGA-------IDLSPMQMLGMYQIFANGGAYTPIHT 605
                     889*******************************999999....66666666......7788.......9************************* PP

                     EEEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCG.TCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SEEE CS
  Transpeptidase 188 vkaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtata.avegykvagKTGTAevagkkgngkkegakiswfvgyapadnpkyav 281
                     +  + d++g   + +++ ++    ++++  +++gl++v ++g+++a+        +agKTGT++ + +           +wf+gy    n + +v
      EGE27260.1 606 IRTVIDDNGRVLQRSQPRHQFRAPPQAVYLLNRGLQEVIKSGTAKAADsINNHLGLAGKTGTTNDNRD-----------AWFAGYSG--NYVSVV 687
                     *********88888888899999*******************999888767777********988752...........49999984..344444 PP

                     EE CS
  Transpeptidase 282 av 283
                      v
      EGE27260.1 688 WV 689
                     44 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0     5e-20   2.2e-16       1      85 []      84     167 ..      84     167 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 5e-20
        UB2H   1 LypGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriellrRgFdfpdg.aeparrvrlrfagnrvasiqdldngrdlalvRL 85 
                 L++Gaalsa++le +L+ll+Y ++ + +++G y+ +g+ +++++RgF+++d  ++p++ ++++f+ n+++s+++ +++ + +++RL
  EGE27260.1  84 LHQGAALSAKDLESWLKLLRYSHD-DTSQTGRYQKNGQVYTIYTRGFHYGDAdKDPKQLIEVHFDRNTIKSLKSSAPN-NSGILRL 167
                 789********************8.8999**********************9899*******************9976.7899987 PP

>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.7e-06     0.026       1      87 [.      82     177 ..      82     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.7e-06
  UvrB_inter   1 lelkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpas........aeevairieffgdeiesireidpltgksl..ekleeitifP 87 
                 l l++g++++ ++l + L  l Y++ d+  + G ++ +G++  i+             ++ i ++f+ ++i+s+++  p +  +l  e ++   i+P
  EGE27260.1  82 LVLHQGAALSAKDLESWLKLLRYSHDDT-SQTGRYQKNGQVYTIYTRGfhygdadkDPKQLIEVHFDRNTIKSLKSSAPNNSGILrlEPIKIGSIYP 177
                 5699*********************997.799************8877777777654578*****************99987664224566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 5775.91
//
Query:       EGE27261.1  [L=55]
Description: hypothetical protein EA1_03095 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 414.95
//
Query:       EGE27262.1  [L=59]
Description: hypothetical protein EA1_03100 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1669  (0.0930894); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 451.36
//
Query:       EGE27263.1  [L=873]
Description: heavy metal translocating P-type ATPase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-42  144.5   0.6    6.9e-42  143.0   0.6    1.8  1  E1-E2_ATPase   E1-E2 ATPase
    8.3e-34  117.7   0.1    2.6e-33  116.1   0.0    1.8  2  Hydrolase      haloacid dehalogenase-like hydrolase
    3.8e-17   62.8   0.4    8.1e-17   61.7   0.4    1.6  1  ATPase-cat_bd  Putative metal-binding domain of cation transp
    6.1e-08   33.0   0.0    1.3e-07   31.9   0.0    1.6  1  HMA            Heavy-metal-associated domain
     0.0039   17.0   0.0       0.18   11.5   0.1    2.3  2  Hydrolase_3    haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
        1.7    8.0   4.6       0.36   10.1   1.0    1.7  2  DUF4191        Domain of unknown function (DUF4191)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.0   0.6   2.3e-45   6.9e-42      16     179 ..     382     543 ..     368     545 .. 0.96

  Alignments for each domain:
  == domain 1  score: 143.0 bits;  conditional E-value: 2.3e-45
                   EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HHH CS
  E1-E2_ATPase  16 eeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarlveeakskktplq 112
                    +i a+ +++GD++ +++g++++aDg++++ +a+v +s+LTGEs  + k++g+++ +G+++ s+++ + Vt  + +++++ i rl+++a s+k+++ 
    EGE27263.1 382 AKILAQSVKVGDVIWIESGCQIVADGVLLSKTATVSQSLLTGESDLIVKTRGERLAGGSQNDSQPLLMLVTDDVDNSQIALIDRLMNRAMSEKPQIA 478
                   57999******************************************************************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 113 kkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrla 179
                   + +dk+++++v+ vll++llvf++++++ k+  +al  ++a+lva++PcaL la+p+al+++++rla
    EGE27263.1 479 QDADKMARWFVARVLLLSLLVFVVWYFIDKT--QALWATVAVLVATCPCALSLATPIALTVATNRLA 543
                   *************************999998..8*******************************98 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.8   2.4e+03     121     144 ..     341     368 ..     286     395 .. 0.71
   2 !  116.1   0.0   8.8e-37   2.6e-33       3     210 .]     563     781 ..     561     781 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.8
                 TTHHHHHHHHH....HTTEEEEEEESSE CS
                 xxxxxxxxxxx....xxxxxxxxxxxxx RF
   Hydrolase 121 peaaeavasLk....aagievvlltgdn 144
                 +ea ++v++L     +a ie++l+t ++
  EGE27263.1 341 DEASDLVQALAtdqaQAAIETWLATKGD 368
                 5555555555555445566777777554 PP

  == domain 2  score: 116.1 bits;  conditional E-value: 8.8e-37
                 EEEEESBTTTBCHHHHHHHHHHHH....CHHHHHHHHHHHHCHHHHHHHHHHHHH.HHHHHHHHHETTTE........HHHHTHHHHHHHH.HCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx........xxxxxxxxxxxxx.xxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsa....alalaaaletgsehpigkalvaaakar.sgaltgfatfigrg........ayaigkpewltal.dippdlg 87 
                  v+fDk+GTLt g+  +  v+        lalaaale+gs+hp ++a+  aa+++  +a++++ + i  g        +y ig   ++t++    pd++
  EGE27263.1 563 HVAFDKTGTLTLGQANLLAVVSDYpdddILALAAALEIGSRHPVAQAILTAAHGLhLPAVQEMSHHIAGGveavsqgvRYRIGHASFVTDQaSSQPDFD 661
                 69************77777777777999********************999999978888999998888889999****************94555554 PP

                 HHHHHHHHHCHHHHHH.........TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES.STTTSH CS
                 xxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
   Hydrolase  88 aaigsaqsqgrtvall.........qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdiet.vakpsp 176
                    ++++ ++  + +          + r+ a f + dp  ++ +a ++++++k+ g    +ltgd   +a ++a+ lG           i+    +  p
  EGE27263.1 662 YGRYQENLEDYQANMSvllsawqdgSWRLIARFYFNDP--IRTDAHQMIEQIKSSGMIPLMLTGDPNPNALKVAKTLG-----------IDQaYYGLTP 747
                 4444444444444444556667544448**********..**************************************...........6666****** PP

                 HHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 177 egkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 e+kv  i++Lq + + v+mVGDg+nDa+ laaA+
  EGE27263.1 748 EDKVSYIKQLQQDNHIVLMVGDGINDAPVLAAAN 781
                 ***********99999****************96 PP

>> ATPase-cat_bd  Putative metal-binding domain of cation transport ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.4   2.7e-20   8.1e-17       2      86 ..      33     111 ..      32     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 2.7e-20
  ATPase-cat_bd   2 CyHCglpveesaklkaeiegeerefCCkGCqavaqliveaglesyYklrtekakkaeelllpeeleeelalyDseevqkkfvkke 86 
                    C+HCg+ ++++ ++ + i ++ r++CC GCq  aq iveagl++yY +r+e + +a   +lpe+   ++++y++++++++fv  e
     EGE27263.1  33 CFHCGEVLPKE-PFFTMIFDKPRPMCCLGCQLAAQSIVEAGLSQYYLDRREISPTA---SLPEAI--NFDAYNHADIKEQFVYAE 111
                    ******99985.89999*****************************9888777733...578887..9**************875 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   4.5e-11   1.3e-07       2      62 .]     119     179 ..     118     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 4.5e-11
         HMA   2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 ++v ++ C +C   +e  L +l+gV+++ v+l  +++ V++d+  +++ +i++++++ gy+
  EGE27263.1 119 LSVTNLKCSACTWLIETRLRSLDGVRACQVNLTQQRMRVNWDDGILSIGEILKTVHSVGYD 179
                 57899******************************************************96 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.024        72      17      58 ..     701     742 ..     697     745 .. 0.89
   2 !   11.5   0.1   6.1e-05      0.18     195     242 ..     753     800 ..     751     813 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.024
                  -HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEE CS
  Hydrolase_3  17 sektkeaikklkekgikvviATGRslravlpvleelgldlpv 58 
                     + + i+++k+ g+     TG +  ++l+v++ lg+d+++
   EGE27263.1 701 RTDAHQMIEQIKSSGMIPLMLTGDPNPNALKVAKTLGIDQAY 742
                  5667899*******************************9765 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.1e-05
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEE CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyv 242
                  ++k+l+ ++  v+ +GDg ND + L aa+++ A++ a + ++  +d v
   EGE27263.1 753 YIKQLQQDNHIVLMVGDGINDAPVLAAANVSTAIAGAADLAQVSSDSV 800
                  57889999999************************9999887776665 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.5   4.4e+03      19      48 ..     193     223 ..     190     230 .. 0.52
   2 ?   10.1   1.0   0.00012      0.36      16      63 ..     476     523 ..     466     546 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.5
     DUF4191  19 rkedkk.llwlllaaflvvvvvfvvlglllg 48 
                 ++++++ l+ l +aa+ ++ ++++ +g+ +g
  EGE27263.1 193 KRQNQQmLIRLGIAALGAMQAMMFSIGMYFG 223
                 4444441444444444445566677777764 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00012
     DUF4191  16 kltrkedkkllwlllaaflvvvvvfvvlglllgslilllilgillgll 63 
                 ++ + +dk+  w+++ ++l+ ++vfvv  ++ +++ l+  +++l+++ 
  EGE27263.1 476 QIAQDADKMARWFVARVLLLSLLVFVVWYFIDKTQALWATVAVLVATC 523
                 78999**************************87899999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:01.71
# Mc/sec: 1544.58
//
Query:       EGE27264.1  [L=239]
Description: membrane protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-58  197.7  22.0    2.3e-58  197.5  22.0    1.0  1  BaxI_1    Bax inhibitor 1 like
      1e-05   25.5  29.9    1.3e-05   25.1  29.9    1.1  1  Bax1-I    Inhibitor of apoptosis-promoting Bax1


Domain annotation for each model (and alignments):
>> BaxI_1  Bax inhibitor 1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.5  22.0   2.5e-62   2.3e-58       1     231 [.       3     238 ..       3     239 .] 0.93

  Alignments for each domain:
  == domain 1  score: 197.5 bits;  conditional E-value: 2.5e-62
      BaxI_1   1 npvfsrseekkqkeeaaaeamtvddvvvktaillgvlvvtavvtwflvlaaaaa......lllvgalvglvlalvasfkkkvspalvllYAvleGlflG 93 
                 np++sr++ +     ++a am+v++vv kta+ll +++v+++  +f++l+ +++      ++lv++++g+ ++l++++k+++++ l++ YA++eG++lG
  EGE27264.1   3 NPIISRTTLA-----TSAVAMSVRGVVSKTAFLLSLAAVSGFGVFFYALSINVSssllyaMALVSVFAGMGVGLASAMKPHLAKSLAIPYALIEGVLLG 96 
                 5666555533.....33345**************************9998888899**99999************************************ PP

      BaxI_1  94 gislvfea..pgivvqAvlgTlgvfavmlvlYktgairvtpkftkivvaaligilllylvnlvlslfgvge.glrdgg.lgilfslvvivlAalsLllD 188
                  +sl++    p + + A+ +T++++avml+lY+tg+i+vt+kf+ iv+ a+i+i +lylv+l ++ fg +   l dgg ++i+fs++vi++A++sLllD
  EGE27264.1  97 TFSLIMYRyyPSVPLSALSATFITAAVMLTLYATGIIKVTEKFRAIVTSAVIAIGILYLVQLGFHPFGSSLpLLFDGGmVAIGFSVFVILIASFSLLLD 195
                 ******99***********************************************************987655777766******************** PP

      BaxI_1 189 FdqieqgvragaPkkyeWyaAfGLlvTLVWLYleiLrLLsylr 231
                 Fd++e+gv+ g+ ++yeW+ ++G+l TLVW+Y+e+LrL+ yl+
  EGE27264.1 196 FDNVEKGVAFGVAQDYEWVYGIGILSTLVWMYIEFLRLIGYLQ 238
                 *****************************************98 PP

>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1  29.9   1.5e-09   1.3e-05       6     206 ..      26     233 ..      13     234 .. 0.67

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.5e-09
      Bax1-I   6 kvYgllalgllltalvaavvlsspa..qlflslhivlflvvilaplalvflslsaarlkkkssalalallllftlleGlslsp...illvytgaiilqa 99 
                 k    +a+ l l+a+ +++v++++   +  +sl +++ lv+++a++++ +   + a++ +    la  l + ++l+eG++l++   i++ y +++ l+a
  EGE27264.1  26 K----TAFLLSLAAVSGFGVFFYALsiNVSSSLLYAMALVSVFAGMGVGL---ASAMKPH----LAKSLAIPYALIEGVLLGTfslIMYRYYPSVPLSA 113
                 3....344444444444444444432234444444555556666666555...2222333....33667788888888877773225555558888888 PP

      Bax1-I 100 flltaaifgglslyalttkrdls.glggflfagligliiaslvn.lF..........lpssalelaisylgvllfsglilyDtqki.ierageygeeda 185
                 + +t+++ +++ ++ +t   +++ ++  ++++++i++ i+ lv+  F          + ++++ + +s++++l+ s  +l D++++ +  a+ ++++  
  EGE27264.1 114 LSATFITAAVMLTLYATGIIKVTeKFRAIVTSAVIAIGILYLVQlGFhpfgsslpllFDGGMVAIGFSVFVILIASFSLLLDFDNVeKGVAFGVAQDYE 212
                 777777777777777777777776888888888888888888884475556665554449999999999999999999******997445666666668 PP

      Bax1-I 186 ilaalsLyldfinlFlslLri 206
                 +   + +  +++++++ +Lr+
  EGE27264.1 213 WVYGIGILSTLVWMYIEFLRL 233
                 9999***********999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1735.56
//
Query:       EGE27265.1  [L=322]
Description: inorganic polyphosphate/ATP-NAD kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-61  207.4   1.0    3.6e-61  206.9   1.0    1.1  1  NAD_kinase  ATP-NAD kinase
     0.0013   18.4   0.2     0.0028   17.3   0.2    1.6  1  DAGK_cat    Diacylglycerol kinase catalytic domain
  ------ inclusion threshold ------
        0.1   12.4   0.0       0.18   11.6   0.0    1.3  1  Rb_C        Rb C-terminal domain
       0.11   12.2   0.1       0.29   10.8   0.1    1.7  2  ApbA        Ketopantoate reductase PanE/ApbA
       0.13   12.9   0.0       0.28   11.8   0.0    1.4  1  SlpA        Surface later protein A domain


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.9   1.0     1e-64   3.6e-61       2     287 ..      17     292 ..      16     296 .. 0.90

  Alignments for each domain:
  == domain 1  score: 206.9 bits;  conditional E-value: 1e-64
                 EEEEESSCGGTCSHHHHHHHHHHHCT-..EEEEECCGGCCSSSTT--HHHHTTTT--.......EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHH CS
  NAD_kinase   2 vgivvnpikkeaieraeevarwLldalsrvlevtveeklgeslaeaaefrsevisvlkkvkttddtrkaleafadagvdliivvGGDGTaldvarllqk 100
                 +g+  +  k +++e+ +e+ r+L+ +    l ++ + +++ ++   ++ +++++s           +   +    +++dl+ivvGGDG +l++a++++ 
  EGE27265.1  17 IGVMGRAGKASIVETLNELIRLLKMR---QLSIVIDAQTAAIEGILIDGEHTDDS----------IIITPRHTMGEQCDLVIVVGGDGSMLQAASVMAG 102
                 78888888888999999999999988...78888888887777776555555555..........444445556899********************** PP

                 CT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEEEEEEETTE.......EEEEEEESSEEEEEESSSSS-EEEEEEETTEEEEEEEES CS
  NAD_kinase 101 aeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevldavimrskgee.diadiviensvlnevviirgpgstlielelyvdtelleadqld 198
                   +Pvlg+n+G++gfl++++p++++e   ++l+g++ + +r++l+ +i ++  +  ++ +++ e+ +ln++v++ g+  + i+++l+++++++  + +d
  EGE27265.1 103 TGVPVLGINRGRLGFLADINPDELTEKVGQVLDGQYWLVERFLLKLQIIQNTTNDnALTQVLHEDIALNDIVLHAGKSVHTIDFKLKINNKDVYRQHAD 201
                 *********************************************7776666554599***************************************** PP

                 EEEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-..SS--EEEEETTTEEEEE-TT-EEEEEEESSEE CS
  NAD_kinase 199 glivstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva..srseallaldGseelelspgdevrvtasdkkf 287
                 gliv+tPtGstay+lsaGgp+i+P+++ai +vp+ Ph+ls+rp+Vv+ ss++ i ++  +r++ ++  dG+  + l+ ++++ + ++dk  
  EGE27265.1 202 GLIVATPTGSTAYALSAGGPIIHPTLDAICLVPMHPHTLSDRPLVVAGSSQIMINIHkdNRTQPMVGADGKTSVPLENDQTLIIAKHDKTL 292
                 ********************************************************999****************************9875 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   7.8e-07    0.0028       9      85 ..      22     107 ..      19     118 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.8e-07
                 TCTTTTHHHHHHHCHHHHHHCTCEEEEEE--STTHHHHHHHHHHHC............C-SEEEEEESHHHHHHHHHHHCTHHCTTSEE CS
    DAGK_cat   9 ksGkgkgekllrkvrelleeagvelelieteepgdakelakeakee............gvdlivvaGGDGtvsevlnglleelatkppl 85 
                 ++Gk ++ ++l+++ +ll+ +++++ +   + + ++  +  e+ ++            + dl++v+GGDG + ++++++++   t +p+
  EGE27265.1  22 RAGKASIVETLNELIRLLKMRQLSIVIDAQTAAIEGILIDGEHTDDsiiitprhtmgeQCDLVIVVGGDGSMLQAASVMAG---TGVPV 107
                 578888888888888888888887777777777775555555555444444444555588*******************99...55444 PP

>> Rb_C  Rb C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.9e-05      0.18       9      51 ..     224     266 ..     219     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.9e-05
        Rb_C   9 pptlspiphiprspykfsnsplrvpgsnnvyvsplksprlsps 51 
                 +ptl  i  +p  p+  s+ pl v+gs+ + +   k +r  p 
  EGE27265.1 224 HPTLDAICLVPMHPHTLSDRPLVVAGSSQIMINIHKDNRTQPM 266
                 799**********************************999886 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   3.9e+03      63      74 ..      75      86 ..      51      93 .. 0.67
   2 ?   10.8   0.1     8e-05      0.29      37      99 ..     169     231 ..     151     233 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                CCCCS-ESEEEE CS
        ApbA 63 kselepidlviv 74
                   +e++dlviv
  EGE27265.1 75 HTMGEQCDLVIV 86
                334567999998 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 8e-05
                 HHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTC.EEEE CS
        ApbA  37 kknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpn.tvvl 99 
                   n++ l+  +  +++ ++ +++++ +   +++d +iv++++ +t++al++  p+++p+  +++
  EGE27265.1 169 ALNDIVLHAGKSVHTIDFKLKINNK-DVYRQHADGLIVATPTGSTAYALSAGGPIIHPTlDAIC 231
                 3333344444433333344444444.447799************************99844554 PP

>> SlpA  Surface later protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.7e-05      0.28      21      45 ..     174     197 ..     167     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.7e-05
        SlpA  21 klkkgssvktygkkvtIkNgkkYYk 45 
                 +l +g+sv+t+  k +I N+k+ Y+
  EGE27265.1 174 VLHAGKSVHTIDFKLKI-NNKDVYR 197
                 799**************.9*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2409.41
//
Query:       EGE27266.1  [L=96]
Description: hypothetical protein EA1_03120 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-33  114.0   0.1    2.8e-33  113.8   0.1    1.0  1  DUF1315   Protein of unknown function (DUF1315)
     0.0012   18.5   0.0     0.0012   18.4   0.0    1.1  1  Rot1      Chaperone for protein-folding within the ER, fungal
  ------ inclusion threshold ------
      0.092   12.6   0.1       0.19   11.6   0.1    1.5  1  DUF1289   Protein of unknown function (DUF1289)
       0.16   12.0   0.0       0.18   11.7   0.0    1.3  1  Ten1      Telomere capping, CST complex subunit


Domain annotation for each model (and alignments):
>> DUF1315  Protein of unknown function (DUF1315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.1   6.3e-37   2.8e-33       1      81 [.       4      89 ..       4      90 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 6.3e-37
     DUF1315  1 eellasltpevyqrlkqAvElGkWpdGrklteeQretcmqavmvyeakhlkeeervGyikkkske.....Geelkkeeeekkpnle 81
                +e+l+sltpe+ +++++A+E+G+W +G++lt+ Qr+tcmqavmv+e++hl+ +er+Gyi++++ke     Ge ++ e+++++pn e
  EGE27266.1  4 QEILNSLTPEIIDKFRTAIEIGRWENGERLTDTQRQTCMQAVMVWEHEHLPITERTGYIHRPIKEdgtviGEACDVEHDHHYPNAE 89
                689********************************************************************************975 PP

>> Rot1  Chaperone for protein-folding within the ER, fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.7e-07    0.0012      53     104 ..      34      85 ..      25      96 .] 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.7e-07
        Rot1  53 anpknpsCpkavlqfqHGtyeleangslvltPievDGRqllsdpCk.kkksty 104
                 +++++++C +av+ + H +  +++    + +Pi++DG  ++ + C+ ++   y
  EGE27266.1  34 TDTQRQTCMQAVMVWEHEHLPITERTGYIHRPIKEDGT-VIGEACDvEHDHHY 85 
                 678999*******************************6.56788983333344 PP

>> DUF1289  Protein of unknown function (DUF1289)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.2e-05      0.19      20      44 ..      18      45 ..      18      47 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.2e-05
     DUF1289 20 gRtldEiaaWs...smsdeerravlarl 44
                +Rt  Ei +W+   +++d++r+ +++++
  EGE27266.1 18 FRTAIEIGRWEngeRLTDTQRQTCMQAV 45
                79********98889*********9975 PP

>> Ten1  Telomere capping, CST complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.1e-05      0.18      68     116 ..       7      58 ..       2      79 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.1e-05
                 TTTS.GG.......GGSTT-EEEEEEEEECTTE......EEEEEEEE-TCGGHHHH CS
        Ten1  68 Lesvkae.......elqvGawvnvvGyvreeksskrsvyveavmifsagaveLgey 116
                 L+s++ e        +++G w n+    +    ++r+ + +avm+++ + + ++e+
  EGE27266.1   7 LNSLTPEiidkfrtAIEIGRWENGERLTD----TQRQTCMQAVMVWEHEHLPITER 58 
                 5555555555555599********93333....45689*********999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 792.08
//
Query:       EGE27267.1  [L=168]
Description: adenine phosphoribosyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-15   55.9   0.1    4.6e-15   55.5   0.1    1.1  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.047   13.1   0.0      0.067   12.6   0.0    1.2  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   5.1e-19   4.6e-15      13     125 ..      35     150 ..      26     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 5.1e-19
                   EEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE...........EE----TTSEEEEE-SEESSSHHHHHH CS
  Pribosyltran  13 davarlaaeileeyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes...rlledpagkkVliVDDildtGgTllaa 106
                   + ++ l+  + +++    d++v+++++G+++a+ la +L+  l  +rk+ + p++    + g++  s   + + d++   Vl+VDD+l+tGgTl aa
    EGE27267.1  35 QLIDALIDALPSDILAATDALVAVESRGFVLASLLAARLDKGLILIRKTGKLPPPVHRESYGLEYGSdtlEISCDLDPANVLLVDDVLATGGTLVAA 131
                   4444555555555555699****************************************9888666699999************************* PP

                   HHHHHCC-BSEEEEEEEEE CS
  Pribosyltran 107 lelLkekgpeevriavlvd 125
                    +l k++g + +++ vl+d
    EGE27267.1 132 DKLCKAAGLTALGSLVLLD 150
                   ***************9986 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.4e-06     0.067     120     146 ..     111     137 ..      81     148 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.4e-06
     UPRTase 120 aertvlllDpviaTGgsaaaaiqlLke 146
                 +  +vll+D v+aTGg+++aa +l k 
  EGE27267.1 111 DPANVLLVDDVLATGGTLVAADKLCKA 137
                 5567***************99666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1454.86
//
Query:       EGE27268.1  [L=546]
Description: 2-octaprenylphenol hydroxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-34  116.3   0.0    1.6e-33  115.3   0.0    1.4  1  ABC1      ABC1 family


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   9.2e-38   1.6e-33       3     119 .]     113     230 ..     112     230 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 9.2e-38
        ABC1   3 lgkkleeiFaefdeePiAaASiaqVhrAklksgeeVavKvqrpgvkkriksDlellkllakllkkflkelr.ldleelvdefskslleEldferEAkna 100
                 lg+++ +iFa fde P+AaAS+aqVh+A l++g+eV+vKv rp++k+ i +D+ell+++a +++  l+  r  +l  +v+++++ +l+Eld++ EA+n+
  EGE27268.1 113 LGQPIGDIFARFDEIPLAAASVAQVHTAALHDGREVVVKVVRPNIKQGIIADFELLRQMAAWASARLEAARaIHLIDVVEDYRQIMLNELDLTLEAANS 211
                 799*************************************************************999999989************************** PP

        ABC1 101 ekfrenfaklkevkvPkvy 119
                  k+r+nf     ++vP+vy
  EGE27268.1 212 TKMRHNFTGSRLIYVPEVY 230
                 ******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4038.96
//
Query:       EGE27269.1  [L=214]
Description: hypothetical protein EA1_03135 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       975  (0.0543812); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1588.64
//
Query:       EGE27270.1  [L=285]
Description: demethylmenaquinone methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-99  332.4   0.0    1.5e-99  332.1   0.0    1.0  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.1e-22   80.5   0.1    2.5e-22   79.4   0.1    1.6  1  Methyltransf_25  Methyltransferase domain
    1.3e-21   76.9   0.0    2.1e-21   76.3   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    3.5e-21   75.7   0.0    7.1e-21   74.7   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    6.9e-16   58.5   0.0    1.1e-15   57.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.5e-14   54.5   0.0    2.9e-14   53.6   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    9.2e-08   32.1   0.0    2.4e-07   30.8   0.0    1.6  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    1.7e-05   24.5   0.0      3e-05   23.7   0.0    1.4  1  MetW             Methionine biosynthesis protein MetW
    0.00015   21.4   0.0    0.00027   20.6   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0066   16.6   0.0      0.041   14.0   0.0    2.2  2  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
       0.02   14.7   0.0       0.12   12.2   0.0    2.1  2  Methyltransf_8   Hypothetical methyltransferase
       0.02   14.1   0.0      0.038   13.3   0.0    1.4  1  Rsm22            Mitochondrial small ribosomal subunit Rsm22


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.1   0.0  9.7e-103   1.5e-99       4     233 .]      52     282 ..      47     282 .. 0.98

  Alignments for each domain:
  == domain 1  score: 332.1 bits;  conditional E-value: 9.7e-103
                      XXXXXXXXXXX-HHHHHHHHHHHHHTTTHHHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTS CS
  Ubie_methyltran   4 lkeekvkevfesvaskyDlmndvlslgihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegk 97 
                       k++kv+evf sva+kyD+mnd++s+gihrlWk++ + l++v++g++vlD+agGtgDla  +s++vg++g+vv+ Dine mL+vg+ +l + g 
       EGE27270.1  52 EKQAKVAEVFTSVARKYDVMNDLMSFGIHRLWKRYAISLTGVRSGQRVLDIAGGTGDLAKVFSREVGRSGRVVLSDINEAMLEVGRTRLINAGC 145
                      57788***************************************************************************************** PP

                      STEEEEE--TTT-.TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHHHHS-HHHHHH CS
  Ubie_methyltran  98 inieflqanaeeL.pfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGkllakdldsyry 190
                       n++f+ anae L pfed+sfD+vt+sfGlrnvtDk+kaL  ++rvlkpGGrl+vlefsk+  + ls+ay+lys++ lP +Gk++a d++sy+y
       EGE27270.1 146 HNVDFVLANAETLePFEDNSFDLVTISFGLRNVTDKDKALSAMHRVLKPGGRLLVLEFSKPVFEPLSKAYDLYSFTALPIMGKIVAGDAESYQY 239
                      *************67******************************************************************************* PP

                      HHHHHHHS--HHHHHHHHHHTTEEEEEEEEEGGGTEEEEEEEE CS
  Ubie_methyltran 191 LvesirafPdqetlkeliedaGfksveyesltgGvvaihigvk 233
                      L+esir++Pdq+tlk+++++aGf + +y++ltgG+va+h+g+k
       EGE27270.1 240 LAESIRMHPDQQTLKQMMQNAGFVNCDYHNLTGGIVAVHRGFK 282
                      *****************************************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.1   1.7e-25   2.5e-22       1      97 []      99     196 ..      99     196 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 1.7e-25
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGB.SSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl.nvefvqgdaedl.pfedgsfDlvvssgalhhlsdedlekalkeiar 91 
                      vLd++ GtG+l++ +++++g +++v+  Di+e+mle  r+r+ ++g+ nv+fv ++ae+l pfed+sfDlv++s++l  ++d+d  kal+ ++r
       EGE27270.1  99 VLDIAGGTGDLAKVFSREVGrSGRVVLSDINEAMLEVGRTRLINAGChNVDFVLANAETLePFEDNSFDLVTISFGLRNVTDKD--KALSAMHR 190
                      9******************779*************************************956************9999998655..9******* PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      vLkpgG
       EGE27270.1 191 VLKPGG 196
                      *****9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   1.4e-24   2.1e-21       3     130 ..      95     228 ..      93     261 .. 0.76

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 1.4e-24
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkile 95 
                      +g rvlD++ GtG+l++++ +e+g  ++vv+ Di+e ++e+ r+++ + g  nv F  +++e+  +  +ed++fDl++    l  ++d+dk+l 
       EGE27270.1  95 SGQRVLDIAGGTGDLAKVFSREVGRSGRVVLSDINEAMLEVGRTRLINAGCHNVDFVLANAETlEP--FEDNSFDLVTISFGLRNVTDKDKALS 186
                      7889***********************************************************555..***********9999*********** PP

  Methyltransf_31  96 eiervlkpggilliedprllaelpakveeeskay.........e 130
                       ++rvlkpgg+ll+ +++  + + + +++  ++y         +
       EGE27270.1 187 AMHRVLKPGGRLLVLEFS--KPVFEPLSKAYDLYsftalpimgK 228
                      ******************..444444444444444442222221 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   4.7e-24   7.1e-21       1      96 []     100     200 ..     100     200 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 4.7e-24
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl.kvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLk 89 
                      Ld++ GtG la+ + + +   +rvv  D++++ml++ +++  ++g  +v+fv a+ae+l pfednsfDlv++s+ l +v d +kal+ ++RvLk
       EGE27270.1 100 LDIAGGTGDLAKVFSREVgrsGRVVLSDINEAMLEVGRTRLINAGChNVDFVLANAETLePFEDNSFDLVTISFGLRNVTDKDKALSAMHRVLK 193
                      89*************6666999**********************99************************************************ PP

                      EEEEEEE CS
  Methyltransf_11  90 pgGllvi 96 
                      pgG+l++
       EGE27270.1 194 PGGRLLV 200
                      ****975 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   7.1e-19   1.1e-15      21     161 ..      94     263 ..      51     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 7.1e-19
  Methyltransf_23  21 raggrvLdiGcGtGillevlren.gf..svtgvDlspeaveiae.........kakkaqkdqfdeq.eaaepqgkfdlIvlrevlehvpdppel 101
                      r+g+rvLdi+ GtG l++v++++ g    v++ D+++++ e  +         +     ++ ++++  +++++++fdl++ +++l +v d  ++
       EGE27270.1  94 RSGQRVLDIAGGTGDLAKVFSREvGRsgRVVLSDINEAMLEVGRtrlinagchN---VDFVLANAEtLEPFEDNSFDLVTISFGLRNVTDKDKA 184
                      7788****************665365789********99998878888884441...33333333324556779******************** PP

  Methyltransf_23 102 lrqiatllkpgGylllseplasl.....................kedrllldwlylvpagrhisffsarslkelleeaGle 161
                      l+ +++ lkpgG+ll++e+ ++                        + ++++++yl++    +   + ++lk+++++aG+ 
       EGE27270.1 185 LSAMHRVLKPGGRLLVLEFSKPVfeplskaydlysftalpimgkIVAGDAESYQYLAES--IRMHPDQQTLKQMMQNAGFV 263
                      *******************9999888888888887777777763366666668888866..55555779**********96 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.9e-17   2.9e-14       1      99 []     100     198 ..     100     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 1.9e-17
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklL 93 
                      L+i +GtG+l++++ ++  +  +++ +Di+++++e  +++l   + +n+++v  +a+  l+ ++ +sfDlv++s+ l ++ d++++l+ ++++L
       EGE27270.1 100 LDIAGGTGDLAKVFSREVgRSGRVVLSDINEAMLEVGRTRLINAGCHNVDFVLANAET-LEPFEDNSFDLVTISFGLRNVTDKDKALSAMHRVL 192
                      8*****************9999******************999997666655555555.4556669**************************** PP

  Methyltransf_12  94 kpgGrl 99 
                      kpgGrl
       EGE27270.1 193 KPGGRL 198
                      ****97 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.7   4.1e+03      17      31 ..      53      67 ..      46      76 .. 0.77
   2 !   30.8   0.0   1.6e-10   2.4e-07      67     171 ..      89     200 ..      80     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.7
                --HHHHHHHHHS-GG CS
        PCMT 17 ksdkvaealeevdRe 31
                k+ kvae++ +v R+
  EGE27270.1 53 KQAKVAEVFTSVARK 67
                677999999999997 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 1.6e-10
                 HHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGG..TTGGG-SEEEEEESSBBSS--......H CS
        PCMT  67 ellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrk..GyeekaPYdaihvgaaapeiP......e 157
                  l  ++ g+rvL++ +G+G l+ v++r vg++grvv  +  + + e  + +l + + +nv +v +  ++   +e++  +d + ++ +  ++        
  EGE27270.1  89 SLTGVRSGQRVLDIAGGTGDLAKVFSREVGRSGRVVLSDINEAMLEVGRTRLINAGCHNVDFVLANAETlePFEDN-SFDLVTISFGLRNVTdkdkalS 186
                 5666899******************************************************999876541155554.5999999988877752222224 PP

                 HHHHTEEEEEEEEE CS
        PCMT 158 alidQLkeGGrlvv 171
                 a+ + Lk+GGrl+v
  EGE27270.1 187 AMHRVLKPGGRLLV 200
                 56788999999986 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0     2e-08     3e-05      10     102 ..      92     192 ..      84     206 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2e-08
        MetW  10 likpgsrvldlGcGdGellellkeekqvdgrGleld..eegv....aecvakGlsviq...gdldkdlenfedksfdyvvlsqtlqatrnpkevldell 99 
                  +++g rvld+  G G+l +++  e + +gr +  d  e+ +    ++ ++ G + ++    ++ + le fed+sfd+v +s  l+++ + ++ l+ + 
  EGE27270.1  92 GVRSGQRVLDIAGGTGDLAKVFSREVGRSGRVVLSDinEAMLevgrTRLINAGCHNVDfvlANA-ETLEPFEDNSFDLVTISFGLRNVTDKDKALSAMH 189
                 58999*****************998877777664441122220011233444444333110343.5799****************************99 PP

        MetW 100 rig 102
                 r+ 
  EGE27270.1 190 RVL 192
                 984 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.8e-07   0.00027      31     138 ..      95     201 ..      87     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
                 TCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleankle...vevvasdvleeveekkfdlivsNPPfhagkatelavaeeliaeA 125
                   ++vlD++ G+G l+ ++ +e  +   v+l d++ + le+ ++ l + +++     + + + le +e+++fdl+     +++ ++      ++ + + 
  EGE27270.1  95 SGQRVLDIAGGTGDLAKVFSREVGRSGrVVLSDINEAMLEVGRTRLINAGCHnvdFVLANAETLEPFEDNSFDLVTISFGLRNVTD-----KDKALSAM 188
                 4678****************99988767**************9988776666633667778899***********99888888877.....34445556 PP

                 HHHEEEEEEEEEE CS
         MTS 126 keaLkegGeLliV 138
                 +++Lk+gG+Ll+ 
  EGE27270.1 189 HRVLKPGGRLLVL 201
                 7899999999875 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.7e-05     0.041      20     129 ..      94     196 ..      76     226 .. 0.70
   2 ?   -1.7   0.0       1.8   2.7e+03      63      98 ..     237     269 ..     210     275 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
                 -TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS.HHHTTEEEE...CS-C.CCSSHHHHHCHCHHHSSEEEEEE--S-SS-CHHHHHHHHHCCC CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.aplpgvtti...qgdi.tdpetiekikealserkvdlvvsDgapdvsgvhdldeylqsqL 113
                 + g++v+D++ ++G  ++v ++++g +g+vv  D+++    + + ++i   + ++ +  +++e++++ ++++ +dlv+   +     v+d+d++l+   
  EGE27270.1  94 RSGQRVLDIAGGTGDLAKVFSREVGRSGRVVLSDINEAmLEVGRTRLInagCHNVdFVLANAETLEP-FEDNSFDLVTISFG--LRNVTDKDKALS--- 186
                 57899********************9*********77633335555556666666445556666665.77899****99877..555555555555... PP

                 CHHHHCCHCCCCECCC CS
        FtsJ 114 llaalelalkllkpgg 129
                        + ++lkpgg
  EGE27270.1 187 ------AMHRVLKPGG 196
                 ......3344455555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.8
                 EEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-S CS
        FtsJ  63 vttiqgditdpetiekikealserkvdlvvsDgapd 98 
                  + +   i+++  ++++k+++++  + +v +D   +
  EGE27270.1 237 YQYLAESIRMHPDQQTLKQMMQN--AGFVNCDYH-N 269
                 45556677788888888887754..888888876.5 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.63   9.5e+02     143     188 ..      95     143 ..      90     159 .. 0.75
   2 ?   12.2   0.0   7.9e-05      0.12     117     160 ..     160     204 ..     146     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.63
                     HHHHHEEE.EEEEEEEEEGGG-S..-HHHHHHHHHCTTEEEEEEE--ST CS
  Methyltransf_8 143 eanrvlkv.GGllkvaevksrfe..svklfaraltklGfevkskdlsnk 188
                       +rvl + GG   +a v sr +  s+++++ ++++  +ev  ++l n+
      EGE27270.1  95 SGQRVLDIaGGTGDLAKVFSREVgrSGRVVLSDINEAMLEVGRTRLINA 143
                     5678887548888999999998777888888888887777777776665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 7.9e-05
                     S--TT-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEEEEEEEG CS
  Methyltransf_8 117 Pledesvdvavfclslm.gtnladflkeanrvlkvGGllkvaevk 160
                     P ed+s d++ + + l  +t+  + l  ++rvlk+GG l v e +
      EGE27270.1 160 PFEDNSFDLVTISFGLRnVTDKDKALSAMHRVLKPGGRLLVLEFS 204
                     99*********9999963799999****************99875 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.5e-05     0.038      36     122 ..      97     184 ..      94     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
       Rsm22  36 kslldvgegpgtalwaaselweeleevlvidaseelleiske.laadapelkeaalrrsvirealeleeadLviisyvLleledesre 122
                 + +ld+++g+g    + s    +  +v++ d  e++le++++ l+++  ++    l++  + e  e ++ dLv+is+ L +++d++++
  EGE27270.1  97 QRVLDIAGGTGDLAKVFSREVGRSGRVVLSDINEAMLEVGRTrLINAGCHNVDFVLANAETLEPFEDNSFDLVTISFGLRNVTDKDKA 184
                 5689*******99999999999999***************864666666666667888888788888888*************97764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2065.83
//
Query:       EGE27271.1  [L=205]
Description: superoxide dismutase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-40  137.0   0.1    4.7e-40  135.9   0.1    1.5  2  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do
    5.2e-33  113.4   0.7    8.4e-33  112.7   0.7    1.3  1  Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.61   5.4e+03      28      54 ..      24      32 ..      10      53 .. 0.50
   2 !  135.9   0.1   5.2e-44   4.7e-40       3     102 .]      96     200 ..      95     200 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.61
                HHSSSSEEEEEEEETTTEEEEEEEETT CS
    Sod_Fe_C 28 lavfgsGwawLvldkkkkLeivttknq 54
                ++++                  +++++
  EGE27271.1 24 MEIH------------------HSRHH 32
                3332..................22222 PP

  == domain 2  score: 135.9 bits;  conditional E-value: 5.2e-44
                 HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTEEEEEEEETTTBGGGGTTC......EEEEEE-SGGGTHHHHTT-HHHHHHHHGGGBB CS
    Sod_Fe_C   3 gelaeaieedfgslekfkkefkaaalavfgsGwawLvldkkkkLeivttknqdnplvkeak......plLalDvwehAYyldyqnkradYieafwnvvn 95 
                 g+l++ai +dfgs+e+f+++f++aa+++fgsGwawLvld+  +L++v+t+nqd+pl+ ea+      p+++lDvwehAYyl+yqnkr+dYi+afw+vvn
  EGE27271.1  96 GSLKDAIVRDFGSVEAFQEQFEKAAASRFGSGWAWLVLDEG-SLKVVSTANQDSPLMGEAVagckgyPIIGLDVWEHAYYLKYQNKRPDYIKAFWEVVN 193
                 689***********************************976.***************887789999********************************* PP

                 HHHHHHH CS
    Sod_Fe_C  96 Wkeveer 102
                 W+e+++r
  EGE27271.1 194 WDEAQKR 200
                 ***9986 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.7   9.4e-37   8.4e-33       2      82 .]       3      89 ..       2      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 9.4e-37
                ------SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCHHHHCHCCHHHHHH......HHHHHHHHHHHHHHHHHHHHHTB- CS
    Sod_Fe_N  2 yeLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekleeakkkleelvlk......klekalrnnagghvnHslfwknls 82
                ++LpeL Y ydaLePh++ket+e+Hh++Hh++Yvnn+N +le+++ a+k++ee++++      ++++++rnnaggh+nHslfw++l+
  EGE27271.1  3 FTLPELGYSYDALEPHFDKETMEIHHSRHHQAYVNNANGLLEGTQWADKSAEEVIANldqipaDKRTGVRNNAGGHANHSLFWTILK 89
                9******************************************************99999**999*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1503.72
//
Query:       EGE27272.1  [L=353]
Description: CRISPR-associated protein NE0113 (Cas_NE0113) family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-25   87.9   0.2    1.6e-24   87.2   0.2    1.4  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
      2e-11   44.0   0.0    3.2e-11   43.3   0.0    1.3  1  Cas_NE0113      CRISPR-associated protein NE0113 (Cas_NE0113)


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.2   1.8e-28   1.6e-24       2     196 .]     144     348 ..     143     348 .. 0.81

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1.8e-28
  2OG-FeII_Oxy_2   2 lllipnflsaeeaaellrelleegp...frqptilggkrvsvqqtllgplgwat.....................dgpgyrysekesvdakplsp 72 
                     l++ p++++++ a++ l++ le++      ++++ + ++ +++++ ++ ++w +                     +  +y ys+    +  p+++
      EGE27272.1 144 LYYAPHYFDEQTADAYLDYFLESQIggkPINHRTHNWHHTDLNMVQFRHIHWQQdtikmygkvhklprisawygdNDCPYTYSGI-TLNPNPWTD 237
                     6888999999999999999996654233344555556666777777788888556666666666666777666655589****99.788888866 PP

  2OG-FeII_Oxy_2  73 fpeallrlverlvkaagpegwspnaalvnfYrdga.riglHqDke.esaleapivSlSLGasatfrfgkesreeeiiailLesGdllvmggesrk 165
                      +  l++ + ++       + ++n++l n+Yr+g+  i +H+D+e e + ++ i+S+ +G+s++f+++   +++   ++lL++G++lvm g+ ++
      EGE27272.1 238 RLLMLNDELGKIC------KRRFNSVLMNWYRSGEdYINWHKDDEkELGNNPLIASVNFGESRRFLLRLCDNHTLKLELLLHHGSILVMAGQLQH 326
                     6666666666665......468***********************66799********************************************* PP

  2OG-FeII_Oxy_2 166 ay.HgvprikkdtapeleleelrtrRinlTfR 196
                      + H+vp+ kk            + R+nlTfR
      EGE27272.1 327 FWqHSVPKQKK----------ILGSRVNLTFR 348
                     ******99999..........589*******9 PP

>> Cas_NE0113  CRISPR-associated protein NE0113 (Cas_NE0113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   3.6e-15   3.2e-11       1      87 [.      12     116 ..      12     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 3.6e-15
  Cas_NE0113   1 sPqVvTetldaLlqege.......pvdevvvittkdgkvrealelL.......leeflkdyga..kikldes..aihviedvsgeelaDirteedneal 81 
                 +Pq++Tet+ aL+   e       ++de++v++t dg +++ ++l         ++f ++y +  +i++d s  + hvi+d++g+ l+D +t++dne +
  EGE27272.1  12 TPQIITETIWALACDPElphqerfIPDEIHVLSTDDGLNQIRSRLFsekqgskFAQFQEEYPQlaNINFDDSddYLHVIKDRDGNILKDLKTPKDNELA 110
                 6***********766656666677**************************9998999999998998999875226788********************* PP

  Cas_NE0113  82 lqlivr 87 
                 ++li++
  EGE27272.1 111 ADLICQ 116
                 ****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2616.58
//
Query:       EGE27273.1  [L=291]
Description: hypothetical protein EA1_03155 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-93  313.0   0.1    1.3e-93  312.8   0.1    1.0  1  DUF815           Protein of unknown function (DUF815)
    3.6e-06   27.4   0.1    9.2e-06   26.1   0.1    1.7  1  AAA_16           AAA ATPase domain
    5.3e-05   23.6   0.0    0.00011   22.7   0.0    1.5  1  AAA              ATPase family associated with various cellul
    0.00021   20.7   0.0    0.00034   19.9   0.0    1.3  1  Zeta_toxin       Zeta toxin
    0.00026   21.3   0.4     0.0019   18.5   0.1    2.4  2  AAA_22           AAA domain
    0.00039   20.5   0.0    0.00088   19.3   0.0    1.7  1  AAA_14           AAA domain
    0.00067   19.4   0.0     0.0011   18.7   0.0    1.3  1  AAA_30           AAA domain
      0.001   18.1   0.0     0.0016   17.4   0.0    1.2  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
     0.0034   17.3   0.1     0.0084   16.0   0.0    1.6  1  RsgA_GTPase      RsgA GTPase
     0.0035   16.7   0.2     0.0085   15.5   0.1    1.6  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
     0.0036   17.8   0.2     0.0071   16.9   0.2    1.7  1  ABC_tran         ABC transporter
     0.0056   16.9   0.0       0.01   16.1   0.0    1.5  1  AAA_28           AAA domain
      0.006   16.3   0.1     0.0095   15.7   0.1    1.3  1  IstB_IS21        IstB-like ATP binding protein
     0.0065   15.5   0.0     0.0097   14.9   0.0    1.2  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0077   15.8   0.0       0.02   14.4   0.0    1.7  1  AAA_7            P-loop containing dynein motor region
     0.0078   16.2   0.1      0.015   15.3   0.1    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.021   14.5   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
       0.03   14.9   0.0      0.066   13.8   0.0    1.7  1  AAA_18           AAA domain
      0.034   13.7   0.0      0.062   12.9   0.0    1.4  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.034   14.1   0.0       0.54   10.1   0.0    2.8  2  ATPase_2         ATPase domain predominantly from Archaea
      0.036   14.0   0.0       0.06   13.2   0.0    1.4  1  APS_kinase       Adenylylsulphate kinase
      0.049   13.3   0.0      0.074   12.8   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
      0.051   13.7   0.1       0.18   11.9   0.1    2.2  2  MMR_HSR1         50S ribosome-binding GTPase
      0.051   13.5   0.0       0.11   12.4   0.0    1.6  1  NTPase_1         NTPase
      0.051   12.8   0.0       0.11   11.7   0.0    1.5  1  Septin           Septin
       0.06   11.3   0.0      0.099   10.5   0.0    1.3  1  Herpes_Helicase  Helicase
      0.067   13.4   0.0       0.11   12.7   0.0    1.4  1  AAA_33           AAA domain
       0.08   13.3   0.1       0.24   11.8   0.0    2.0  1  RNA_helicase     RNA helicase
      0.087   12.7   0.1       0.34   10.7   0.0    1.8  2  Asp_Glu_race     Asp/Glu/Hydantoin racemase
        0.1   12.6   0.1       0.19   11.7   0.1    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
       0.11   11.6   0.5       0.63    9.2   0.1    2.0  2  DAP3             Mitochondrial ribosomal death-associated pro
       0.14   11.8   0.0       0.31   10.7   0.0    1.6  2  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.8   0.1   2.3e-96   1.3e-93       3     249 ..      29     282 ..      27     283 .. 0.97

  Alignments for each domain:
  == domain 1  score: 312.8 bits;  conditional E-value: 2.3e-96
      DUF815   3 avafrweekeegalepveevdevklddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvel 101
                 + a+rw  +++g+lep+e     +l+dL gid+qk++l++nt+qfl++lpan+vL++G+rG+GKSslv+all++y+++gLr+iev+++dlk+l k+ ++
  EGE27273.1  29 VLAYRWVGGTSGNLEPIEISFGRSLADLLGIDTQKTKLINNTKQFLAHLPANHVLMTGTRGAGKSSLVRALLQAYHSQGLRVIEVARDDLKHLGKIRHA 127
                 679*****99***************************************************************************************** PP

      DUF815 102 lr.....erperfilfvDDLsFeeeeeeyksLksvLeGsleakpenvliyaTsNrRhLlpeklsdnee...leeeeihaseaveeklsLsdRFGlwlgF 192
                 ++      + +r+++++DDL+F++++e+y++Lks+L+Gsl+++ +++l+yaTsNrRhLlp+ ++dn +    +++e+++ e+++e++sLsdRFGlwl+F
  EGE27273.1 128 IKesvnqGNTNRYLVYCDDLAFNAQDENYRTLKSILDGSLDSEHSQLLVYATSNRRHLLPQMMKDNISiynDQTDEVNPYETIDETVSLSDRFGLWLSF 226
                 *9655545679*******************************************************99988899************************* PP

      DUF815 193 ykldqeeYleiveklakklglelekeeleeeAlewalergsrsgRvArqfvkelagr 249
                 ++++q+ Yl+ive+ ++k++++++ + ++++Al+wa++rg+rsgR+A+qf+++++g+
  EGE27273.1 227 QPMNQSLYLQIVEHELTKVNIAFD-DFAQSQALQWASSRGGRSGRIAYQFAQHWIGQ 282
                 ***********************9.6999**************************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   1.6e-08   9.2e-06      21      84 ..      75     134 ..      56     195 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.6e-08
      AAA_16  21 sgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrq 84 
                 ++ p + vl +G +G GKsslvr+ll+a+  +g  +++   d+l    ++  +  a+ + e ++q
  EGE27273.1  75 AHLPaNHVLMTGTRGAGKSSLVRALLQAYHSQGLRVIEVARDDL---KHLGKIRHAI-K-ESVNQ 134
                 5556699**************************99999999999...6666677777.5.33344 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.9e-07   0.00011       1     119 [.      82     190 ..      82     198 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.9e-07
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgv 96 
                 vl++G+ G GK++l++a+ +     g +++e+   +l   ++g+  + i+e +++  +++    +  D++   a+++      + +++ + L   ld +
  EGE27273.1  82 VLMTGTRGAGKSSLVRALLQAYhsqGLRVIEVARDDLK--HLGKIRHAIKESVNQGNTNR--YLVYCDDLAFNAQDE------NYRTLKSILDGSLDSE 170
                 799******************7444699********99..89999999999998887776..9*****997665555......4444444444445544 PP

                 TTSSSTEEEEEEESSGGGSTHHH CS
         AAA  97 kkkeskvivigatnrpdkldpal 119
                  +   +++v +++nr + l++ +
  EGE27273.1 171 HS---QLLVYATSNRRHLLPQMM 190
                 44...588888888877776654 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.1e-07   0.00034      18      57 ..      81     121 ..      64     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.1e-07
  Zeta_toxin  18 lillgGqpGAGKselaellkdele.rqgnvvrldpDdlRel 57 
                  +l+ G  GAGKs+l ++l ++ + ++ +v+++ +Ddl+ l
  EGE27273.1  81 HVLMTGTRGAGKSSLVRALLQAYHsQGLRVIEVARDDLKHL 121
                 59***************99888775888**********986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         4   2.3e+03      76      98 ..       5      26 ..       3      28 .. 0.85
   2 !   18.5   0.1   3.3e-06    0.0019       5      88 ..      79     196 ..      76     222 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 4
      AAA_22 76 eellealeqalraravielliiD 98
                ++l+++l+q+l ++   + +iiD
  EGE27273.1  5 DHLIQLLTQYLTEHTH-QPIIID 26
                5789999999999999.999998 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 3.3e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka................................. 70 
                 a++++ tG  G+GK+ l+r ll+ ++ +      + +v++v    ++ + ++++++ + +++++ +                                 
  EGE27273.1  79 ANHVLMTGTRGAGKSSLVRALLQAYHSQ------GLRVIEVARDDLKHLGKIRHAIKESVNQGNTNrylvycddlafnaqdenyrtlksildgsldseh 171
                 678999*******************877......55555555555555555555555555544444444444444444433333333333333333377 PP

      AAA_22  71 ......erlsseell.ealeqalra 88 
                       ++ ++++ll +++ ++++ 
  EGE27273.1 172 sqllvyATSNRRHLLpQMMKDNISI 196
                 7777777777777776666666655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.6e-06   0.00088       5     107 ..      82     187 ..      79     213 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.6e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklke..ekktylflDEiqev..pewekalkslvd....eg.knld 94 
                 +++tG R +GK+ l++ l++ +  +  ++++++ dd +   +       ++i+e++++   ++++++ D       +e +++lks++d    ++ ++l 
  EGE27273.1  82 VLMTGTRGAGKSSLVRALLQAYHSQGLRVIEVARDDLKHLGKI-----RHAIKESVNQgnTNRYLVYCDDLAFNaqDENYRTLKSILDgsldSEhSQLL 175
                 789****************999966666777766665554433.....334444432223578999999986543355566666666655434424555 PP

      AAA_14  95 vivtGSnskllsk 107
                 v++t Sn  +l+ 
  EGE27273.1 176 VYAT-SNRRHLLP 187
                 5555.55555544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.9e-06    0.0011      19      54 ..      80     115 ..      69     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.9e-06
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAp 54 
                   +++tG  G+GK+ +++al +a++++g rvi +A 
  EGE27273.1  80 NHVLMTGTRGAGKSSLVRALLQAYHSQGLRVIEVAR 115
                 46899***************************9996 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.9e-06    0.0016      15      47 ..      79     111 ..      73     115 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.9e-06
  TrwB_AAD_bind  15 tqhilivGttGsGKtqalekllrairargdrai 47 
                    ++h+l++Gt G+GK+  +++ll+a  ++g r+i
     EGE27273.1  79 ANHVLMTGTRGAGKSSLVRALLQAYHSQGLRVI 111
                    58***************************9988 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.5e-05    0.0084      88     124 ..      68     104 ..      53     135 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-05
                  TTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  88 egleelkellkdktsvlvGqSGvGKStLinallpele 124
                  +++++  ++l  + +++ G  G+GKS+L+ all+  +
   EGE27273.1  68 NNTKQFLAHLPANHVLMTGTRGAGKSSLVRALLQAYH 104
                  56778888899999******************98632 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.5e-05    0.0085      34      62 ..      73     102 ..      57     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
                   EGGGS-..SEEEE--TTSSHHHHHHHHHHH CS
  FtsK_SpoIIIE  34 dlkkma.shllvaGatgsGKStalntLilS 62 
                   +l+  + +h+l  G+ g GKS  +++L+++
    EGE27273.1  73 FLAHLPaNHVLMTGTRGAGKSSLVRALLQA 102
                   55666679*******************985 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   1.3e-05    0.0071      13      51 ..      81     120 ..      75     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-05
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEE.EETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGei.lldgkdlke 51 
                  v ++G  GaGKS+L+++l++ ++ +  ++ ++  +dlk+
  EGE27273.1  81 HVLMTGTRGAGKSSLVRALLQAYHSQGLRViEVARDDLKH 120
                 68899******************98665552333444444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.8e-05      0.01       2      47 ..      82     130 ..      81     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.8e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvvpEaareileeklakgedalp 47 
                 + +tG+ ++GK++l++aL +     g + v E+ar+ l+++++ ++ + +
  EGE27273.1  82 VLMTGTRGAGKSSLVRALLQAyhsqGLR-VIEVARDDLKHLGKIRHAIKE 130
                 789***************9764553444.569999999888877766554 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.7e-05    0.0095      39     127 ..      69     157 ..      54     182 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-05
   IstB_IS21  39 atlsfiek..kenivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdlgllpldqaea 127
                  t +f+++  ++ ++++G  G+GKs l  al ++   +gl+v+ v  +dL + l + r+  k  +  +  ++  l+  Ddl+++  d++ +
  EGE27273.1  69 NTKQFLAHlpANHVLMTGTRGAGKSSLVRALLQAYHSQGLRVIEVARDDLKH-LGKIRHAIKE-SVNQGNTNRYLVYCDDLAFNAQDENYR 157
                 4566666533567899***************************999999865.4444444332.233334445677789998888777654 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.7e-05    0.0097      29      66 ..      79     116 ..      63     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
                 SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB  29 aqvvGltGvPGaGkstlvealglelrrrGkrvavlavD 66 
                 a+ v +tG+ GaGks lv al + + ++G rv  +a D
  EGE27273.1  79 ANHVLMTGTRGAGKSSLVRALLQAYHSQGLRVIEVARD 116
                 567789**************************877765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.5e-05      0.02      33      88 ..      79     134 ..      59     163 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.5e-05
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklek 88 
                  ++vl++G+ G GK+++++ ll++++++ + ++ +      +  ++++ i++++++
  EGE27273.1  79 ANHVLMTGTRGAGKSSLVRALLQAYHSQGLRVIEVARDDLKHLGKIRHAIKESVNQ 134
                 579**********************9999888887766666666666666666655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.7e-05     0.015      10      45 ..      70     105 ..      60     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-05
                 HHHHHHHCH.TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  10 lgkklakal.gdvilLeGdLGaGKTtlvrglakalgv 45 
                   + la+ l ++ +l++G  GaGK+ lvr+l++a++ 
  EGE27273.1  70 TKQFLAH-LpANHVLMTGTRGAGKSSLVRALLQAYHS 105
                 3333333.44788********************9865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.8e-05     0.021      22      42 ..      79      99 ..      65     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.8e-05
      AAA_29 22 kgatlltGpsGsGKSTllDAi 42
                ++ +l+tG+ G+GKS+l+ A+
  EGE27273.1 79 ANHVLMTGTRGAGKSSLVRAL 99
                3469*************9876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   0.00012     0.066       1      40 [.      82     122 ..      82     197 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00012
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvakengllle 40 
                 +l tGt G+GK++l ++L +   +   g ++++va+++   l+
  EGE27273.1  82 VLMTGTRGAGKSSLVRALLQA--YhsqGLRVIEVARDDLKHLG 122
                 678***************554..44477888887777654444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00011     0.062       3      33 ..      82     112 ..      80     133 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEE CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklaviv 33 
                 +++tG  G+GK++L+++ll+  +++ l vi+
  EGE27273.1  82 VLMTGTRGAGKSSLVRALLQAYHSQGLRVIE 112
                 5789***************999999999996 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.4     8e+02     212     231 ..      24      43 ..       4      45 .. 0.63
   2 ?   10.1   0.0   0.00096      0.54       8      61 ..      67     120 ..      62     264 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.4
    ATPase_2 212 skedfeeiyryvGGkPkalv 231
                   ++  ++yr+vGG  ++l+
  EGE27273.1  24 IIDPAVLAYRWVGGTSGNLE 43 
                 45667788999999887775 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00096
    ATPase_2   8 lkeleeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialrees 61 
                 +++ ++ l   p++ ++ +G +g GK++L++ +++  ++++ +vi +     + 
  EGE27273.1  67 INNTKQFLAHLPANHVLMTGTRGAGKSSLVRALLQAYHSQGLRVIEVARDDLKH 120
                 677788888889999******************999988777666444444444 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00011      0.06       5      43 ..      82     120 ..      79     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTT CS
  APS_kinase   5 vwltGlsgsGKstianalekkLvekgisvylLdGdnvRh 43 
                 v++tG  g+GKs++ +al ++ +++g +v+ +  d ++h
  EGE27273.1  82 VLMTGTRGAGKSSLVRALLQAYHSQGLRVIEVARDDLKH 120
                 89************************9999888887665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013     0.074       7      55 ..      62     112 ..      56     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                      HHHHHHHHHHHHCTSS..S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEE CS
  Sigma54_activat   7 alkelleqikkvaktd..lsvlitGesGtGKellaraiheaskrkekpfva 55 
                      + ++l++++k++ ++    +vl+tG  G+GK+ l ra+ +a + +  ++++
       EGE27273.1  62 QKTKLINNTKQFLAHLpaNHVLMTGTRGAGKSSLVRALLQAYHSQGLRVIE 112
                      45566666666554333589******************9988777666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.3   7.3e+02      49      80 ..      52      83 ..      37      85 .. 0.77
   2 ?   11.9   0.1   0.00032      0.18       2      22 ..      82     102 ..      81     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.3
                EEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEE CS
    MMR_HSR1 49 elvDtpGliegaseek.glgkaflaleeadlil 80
                 l+D+ G i++++++  + +k+fla+  a+++l
  EGE27273.1 52 SLADLLG-IDTQKTKLiNNTKQFLAHLPANHVL 83
                5899999.8755556579999999999887776 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00032
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 v+  G   +GKS+L++al+++
  EGE27273.1  82 VLMTGTRGAGKSSLVRALLQA 102
                 78899*************984 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00019      0.11       1      31 [.      81     111 ..      81     135 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
                 EEEEE--TTSSHHHHHHHHHHHH...GGGEE CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellkssgvkvg 31 
                 +v++TG  G GK+ lv+ +l++ +s+g++v 
  EGE27273.1  81 HVLMTGTRGAGKSSLVRALLQAYHSQGLRVI 111
                 799************************9985 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0002      0.11       7     105 ..      82     183 ..      79     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
                 EEEEEBTTSSCCCCCCTTSSSS----.--------------S-E.EEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHH.HHHHHHHHHHHHCTS CS
      Septin   7 lmvvGesglGkttlintlfetdliee.ekleeasekkkktveik.kkkvvieedgvklnltviDtpgfGdavdnskswepive.yideqfeeylreesk 102
                 +++ G+ g Gk++l+++l++    +  + +e a+++ k+  +i+ + k+++++ +++  l   D   f  + +n ++ + i++  +d++++++l   + 
  EGE27273.1  82 VLMTGTRGAGKSSLVRALLQAYHSQGlRVIEVARDDLKHLGKIRhAIKESVNQGNTNRYLVYCDDLAFNAQDENYRTLKSILDgSLDSEHSQLLVYATS 180
                 7899***************9987776688999999999999**94456677777888899999***********9999999975799999999987766 PP

                 S-- CS
      Septin 103 lkR 105
                  +R
  EGE27273.1 181 NRR 183
                 666 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00018     0.099      56      82 ..      71     102 ..      47     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
  Herpes_Helicase  56 s.....lPFsaylitGtAGaGkstsiqalaen 82 
                      +     lP +  l+tGt GaGks+ + al ++
       EGE27273.1  71 KqflahLPANHVLMTGTRGAGKSSLVRALLQA 102
                      0333449********************99875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00019      0.11       2      32 ..      82     117 ..      82     193 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00019
      AAA_33   2 vllvGlpGsGKstlaerllkklg.....avllssdt 32 
                 vl+ G  G+GKs l++ ll++ +     ++ ++ d+
  EGE27273.1  82 VLMTGTRGAGKSSLVRALLQAYHsqglrVIEVARDD 117
                 79*****************99886655444445555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00043      0.24       1      74 [.      82     164 ..      82     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00043
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl.........klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdeenps.dlaeli 74 
                   ++++G +g GKS+l++ L +a  ++          +lk+ +++  ++ ++++ +g t+   v +dD++ + ++en+    + l 
    EGE27273.1  82 VLMTGTRGAGKSSLVRALLQAYHSQGlrvievardDLKHLGKI-RHAIKESVNQGNTNRYLVYCDDLAFNAQDENYRtLKSILD 164
                   5789*************99999977789999997444443333.5788888889999999999999999998888874444455 PP

>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0006      0.34     106     165 ..      74     138 ..      58     155 .. 0.80
   2 ?   -0.6   0.0       1.8   9.8e+02      13      40 ..     156     187 ..     149     216 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0006
                   HHHHSS-EEEEEE-HHHHHCTHHHHHHHHHGT......EEE....T-CCCHHCCHCHHHHTT-TT CS
  Asp_Glu_race 106 lkatgvkkvglLgTrgtlksglyqkeleanqg.....ievvvpseelqssvnqaiyeelkaGevt 165
                   l+   + +v++ gTrg  ks l ++ l+a++      iev  ++ ++  ++++ai+e++ +G+++
    EGE27273.1  74 LAHLPANHVLMTGTRGAGKSSLVRALLQAYHSqglrvIEVARDDLKHLGKIRHAIKESVNQGNTN 138
                   44467799*********************866887777777777777779999999888899876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.8
                   HHHHHHHBTTSSGGGS..EEEEE-CC....S- CS
  Asp_Glu_race  13 lrklveatpaesdqehlplivlndsa....ip 40 
                   +r l   + ++ d+eh++l+v++ s+     p
    EGE27273.1 156 YRTLKSILDGSLDSEHSQLLVYATSNrrhlLP 187
                   67778888899999999999999998554433 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00034      0.19       1      29 [.      81     110 ..      81     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00034
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEE CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nrevey 29 
                 +vl+ G  G gKs+l++ l++a+  + + +
  EGE27273.1  81 HVLMTGTRGAGKSSLVRALLQAYhSQGLRV 110
                 79********************97554444 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0011      0.63       9      58 ..      65     114 ..      61     136 .. 0.82
   2 ?    0.3   0.0      0.56   3.2e+02     192     249 ..     157     212 ..     136     229 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
                 HHHHHHTTS-SSS---EEEEE-SSSSSTTTTHHHHHHHGGGS--EEEEES CS
        DAP3   9 elikklkkadkkkkvkrlvltGekgsGKSvlLlqalayAlekgwvvlhvp 58 
                 +li++ k+  +  +++ +++tG +g GKS l+  +l   +++g  v++v 
  EGE27273.1  65 KLINNTKQFLAHLPANHVLMTGTRGAGKSSLVRALLQAYHSQGLRVIEVA 114
                 78888888899999***************877666666666677787775 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.56
                 HTTHHH..HS--SSS-EEEEE---SS-SS-..-SS---HHHHHTTTTTGGG-S-E..... CS
        DAP3 192 khfldllsgksklknggvvvaLaatsssnt..pksatlevallqeearpqldpYvkkydk 249
                 +++ ++l+g+ + ++ +++  ++ats+ ++  p+  + ++++++ +  ++++pY +  d+
  EGE27273.1 157 RTLKSILDGSLDSEHSQLL--VYATSNRRHllPQMMKDNISIYNDQT-DEVNPYETI-DE 212
                 5667788888888888887..77777777622444455555555555.789999865.44 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00055      0.31       3      62 ..      86     144 ..      84     169 .. 0.73
   2 ?   -2.6   0.0       6.8   3.8e+03      42      70 ..     159     186 ..     155     195 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00055
                      ESTTSSHHHHHHHHHHHHHHTTE.EEEESSSTTSHHHHHHHHHHHTCS---HHHHHHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvltrepggteiGekirelllkeeeleeqteallfa 62 
                      G  GaGK++ +++l ++++++g++v+     ++ +   kir++++++++  +    l ++
       EGE27273.1  86 GTRGAGKSSLVRALLQAYHSQGLRVIEVA-RDDLKHLGKIRHAIKESVNQGNTNRYLVYC 144
                      667********************955444.444555557888888666655555555555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.8
                      HHHHHHTCS---HHH.HHHHHHHHHHHTTH CS
  Thymidylate_kin  42 irelllkeeeleeqt.eallfaadriehle 70 
                      ++++l     ++e++ ++ + + +r +hl 
       EGE27273.1 159 LKSILD-GSLDSEHSqLLVYATSNR-RHLL 186
                      566666.444444441555555555.6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2052.62
//
Query:       EGE27274.1  [L=297]
Description: putative zinc metallopeptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.4e-108  362.0   9.0   2.8e-107  358.5   9.0    1.9  1  Zn_peptidase   Putative neutral zinc metallopeptidase
     0.0023   17.6   0.1     0.0042   16.8   0.1    1.4  1  DUF4344        Putative metallopeptidase
  ------ inclusion threshold ------
      0.094   12.5   2.8       0.65    9.8   0.0    2.8  3  RNA_pol_inhib  RNA polymerase inhibitor
       0.18   11.8   1.4        0.3   11.0   1.4    1.4  1  Peptidase_M78  IrrE N-terminal-like domain


Domain annotation for each model (and alignments):
>> Zn_peptidase  Putative neutral zinc metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.5   9.0  6.3e-111  2.8e-107       1     290 []       1     292 [.       1     292 [. 0.89

  Alignments for each domain:
  == domain 1  score: 358.5 bits;  conditional E-value: 6.3e-111
  Zn_peptidase   1 mrwrgrresdnvedrrassggegaGGggkgrslggktgllvlilvlvgllfGvdlsallglgqesstaeaaaqssegtaeeaedeqkefvsvvladt 97 
                   m+wrgrr+s+n+edrr  s     GG    +++gg ++++++i +++  +fG+ + + lg  q+ + + ++a ++e++      e+k fv+++ladt
    EGE27274.1   1 MQWRGRRQSNNIEDRR--S-----GG---VKKVGGVSIFGLIIAIILWQVFGISPETTLGVAQQIQGQATTAPTHETAD---MAESKAFVATILADT 84 
                   9***************..2.....33...235555566666777777789**********7777776644444443333...46999********** PP

  Zn_peptidase  98 edtWtqifkekgktyqkpklvlfsrvvrsaCGtassatGPfyCPadrkvyldlsffdelkqklgaaG..............dfaaayviahevGhhv 180
                   ed+Wt if+++g++yq p lvlfs++v+saCG a sa+GPfyCPad+kvyld++ff+++++++g +G              dfa+ayviahevGhhv
    EGE27274.1  85 EDVWTPIFAQSGHHYQPPSLVLFSGAVQSACGSATSASGPFYCPADQKVYLDTQFFRDMRTQMGITGeknhteltrqdqaaDFAQAYVIAHEVGHHV 181
                   ***************************************************************9877444444444444447*************** PP

  Zn_peptidase 181 qnllGilekveqarqgaseaeanqlsvrleLqadcfaGvWansvqqkg.llekgdieealnaakaiGddtLqkqsqgrvvPdsfthGtsqqrqrWfk 276
                   q llGi+++v+qa+ +a+++ an+lsvrleLqadcfaG+Wa + ++++ +l++gdieeal+aa++iGdd Lq++++g++vPdsfthGts+qr++Wf 
    EGE27274.1 182 QTLLGISQQVHQAQIKANQTVANNLSVRLELQADCFAGLWARHNHERTqFLQQGDIEEALDAAEKIGDDYLQHKAHGHAVPDSFTHGTSAQRKNWFY 278
                   *****************************************999988879*********************************************** PP

  Zn_peptidase 277 rGfesGdlaqcdtf 290
                   +Gfe+Gd++qcdtf
    EGE27274.1 279 KGFETGDVHQCDTF 292
                   *************8 PP

>> DUF4344  Putative metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   9.4e-07    0.0042      48     109 ..     121     185 ..     106     195 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.4e-07
     DUF4344  48 eanafydpeekeitiCyelveeieelfakankeee...eeaeeavlgallfvllHElgHalidll 109
                  +++fy p ++++ +  +++++++  +  ++++++   + +++a+  a + v+ HE+gH + +ll
  EGE27274.1 121 ASGPFYCPADQKVYLDTQFFRDMRTQMGITGEKNHtelTRQDQAADFAQAYVIAHEVGHHVQTLL 185
                 5689*****************9998865544444434488888999999**********887666 PP

>> RNA_pol_inhib  RNA polymerase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00015      0.65       1      22 [.      74      95 ..      74      96 .. 0.95
   2 ?   -2.4   0.2      0.93   4.2e+03      24      37 ..     162     174 ..     161     178 .. 0.76
   3 ?    1.8   0.1     0.047   2.1e+02      22      32 ..     236     246 ..     235     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00015
  RNA_pol_inhib  1 kkFivtvegseesfEVPvyAes 22
                   k F++t+   +e ++ P++A+s
     EGE27274.1 74 KAFVATILADTEDVWTPIFAQS 95
                   77******************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.93
  RNA_pol_inhib  24 deAlelAeeeYeea 37 
                    d+A+  A++ Y+ a
     EGE27274.1 162 DQAADFAQA-YVIA 174
                    799999998.8765 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.047
  RNA_pol_inhib  22 sldeAlelAee 32 
                    +++eAl +Ae+
     EGE27274.1 236 DIEEALDAAEK 246
                    89*******96 PP

>> Peptidase_M78  IrrE N-terminal-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.4   6.6e-05       0.3      37     100 ..     164     225 ..     144     246 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.6e-05
  Peptidase_M78  37 hsptrqrftlaHElgHlllhherdkfreegdskaqerlereanafAaelllPeeaflalaatqr 100
                     +++ q+ ++aHE gH++    ++   +++++ +  +++  an ++  l l  + f  l+a+++
     EGE27274.1 164 AADFAQAYVIAHEVGHHVQTLLGIS--QQVHQAQIKANQTVANNLSVRLELQADCFAGLWARHN 225
                    67899************99999875..5666666666666666666666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2105.57
//
Query:       EGE27275.1  [L=223]
Description: carboxylesterase 2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-47  160.4   0.4    6.6e-47  160.1   0.4    1.0  1  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.004   17.8   0.1     0.0046   17.6   0.1    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
       0.02   14.2   0.2       0.17   11.1   0.1    2.4  3  Hydrolase_4    Serine aminopeptidase, S33
      0.023   14.4   0.2       0.23   11.1   0.2    2.2  1  FSH1           Serine hydrolase (FSH1)
      0.039   13.8   0.0      0.053   13.4   0.0    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
      0.046   13.5   0.1      0.064   13.0   0.1    1.2  1  Abhydrolase_5  Alpha/beta hydrolase family
      0.087   12.7   0.0       0.18   11.7   0.0    1.5  1  Lipase_3       Lipase (class 3)
       0.11   12.0   0.1       0.39   10.2   0.1    1.8  1  DUF676         Putative serine esterase (DUF676)
       0.14   10.8   0.0       0.18   10.5   0.0    1.2  1  AXE1           Acetyl xylan esterase (AXE1)


Domain annotation for each model (and alignments):
>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   0.4   3.3e-50   6.6e-47       9     216 ..      14     220 ..       6     221 .. 0.93

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 3.3e-50
                    -SS---EEEEEE--TT--SHHHHHHHH...TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS-B-HHHHHHHHHHHHHHHHHHHHTT- CS
  Abhydrolase_2   9 pkdkaqavviflHGlGdsghawaeaak.t.eaalpnikfifphgpelpvtlnggmrmpaWfdlvglspekkedeagikksaekleelidaelkkgi 102
                    ++++ +++vi lHGlG+sgh +  +      a+   + fifph+p++pvt+n+g +mpaW+d+ ++s + k d a+i  s+ ++ elid e++kgi
     EGE27275.1  14 SAQPITHTVIWLHGLGASGHDFEPIVPnLgLAKDTAVRFIFPHAPKIPVTINNGYVMPAWYDILEMSLNRKVDVAQIISSSAMIDELIDDEIAKGI 109
                    578999*************9887665403146677899********************************************************** PP

                    -GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT-- CS
  Abhydrolase_2 103 pssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaakevlkkllkkvelksyegla 198
                    +s++iii GFSqG+a+a +++lt + klgg +a+s  ++  + ++s  +av+++++++  Hge D +vp  lg +a   lk+l      ++y+ +a
     EGE27275.1 110 DSQNIIIAGFSQGGAVAYHNVLTNSRKLGGLLALSTYFATFEHIQS--IAVNHHIAVKIDHGEFDDIVPKTLGIQAMHHLKSLGLTPIYTTYP-MA 202
                    *********************************************8..999999*******************************9*******.** PP

                    SS--HHHHHHHHHHHHHH CS
  Abhydrolase_2 199 Hsideeemqdikeflkkl 216
                    H+ +  ++ +i ++l++l
     EGE27275.1 203 HQVCLPQITSIGDWLNAL 220
                    *****9999999988865 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   2.3e-06    0.0046       1      81 [.      22     128 ..      22     201 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.3e-06
                    EEEE--GC.....GC..HHHH.HHHHCCT..CEEEEE--T...TST...S-GGCS--HHH........CHHH...HHHHCCTT.........TTSE CS
  Abhydrolase_6   1 vlllHGagssassWl..vapL.aallaag..vhvlapDlp...GhG...rsdpppldled........ladl...aalldelaa.......gggpv 67 
                    v+ lHG+g+s++++   v++L +a+ +a   + ++ap  p   ++G   +   +++d  +        +a++   +a++del++       +  ++
     EGE27275.1  22 VIWLHGLGASGHDFEpiVPNLgLAKDTAVrfIFPHAPKIPvtiNNGyvmP---AWYDILEmslnrkvdVAQIissSAMIDELIDdeiakgiDSQNI 114
                    6789**********535667754444444554444555546664453332...3333311221223333444555555555555666699899999 PP

                    EEEEETCHHHHHHH CS
  Abhydrolase_6  68 vlvGHSlGGalala 81 
                    ++ G S+GGa+a +
     EGE27275.1 115 IIAGFSQGGAVAYH 128
                    ************99 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.32   6.4e+02       3      27 ..      18      42 ..      16      51 .. 0.83
   2 ?   11.1   0.1   8.5e-05      0.17      69     116 ..     105     152 ..      80     166 .. 0.81
   3 ?    0.5   0.0      0.15   3.1e+02     179     220 ..     149     190 ..     145     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.32
  Hydrolase_4  3 pkavvvlvHGlaehsgryaelaeaL 27
                   ++v+ +HGl+ +   ++ ++ +L
   EGE27275.1 18 ITHTVIWLHGLGASGHDFEPIVPNL 42
                 5689********9999998888777 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.5e-05
  Hydrolase_4  69 vkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikak 116
                  +++    +++++ G S GG++a + +l++++k+ gl   ++ ++  ++
   EGE27275.1 105 IAKGIDSQNIIIAGFSQGGAVAYHNVLTNSRKLGGLLALSTYFATFEH 152
                  444455679****************************99999987655 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.15
  Hydrolase_4 179 amkrleeraakitlPllllhGeaDkvvdpeasrelyerlgsk 220
                  + +++++ a + ++ + + hGe D +v++    +++ +l+s 
   EGE27275.1 149 TFEHIQSIAVNHHIAVKIDHGEFDDIVPKTLGIQAMHHLKSL 190
                  6677888888888999999*********99999999988875 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00012      0.23     104     202 ..     114     205 ..      16     209 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
        FSH1 104 dGiiGFSqGaalaal.laslleellkeashpslkfailvsGfkleepkyeeyyeedkiqtptLhvlGelDtvvdeerseaLaeafkns...skvlkHpg 198
                   i GFSqG+a+a   ++++ +         +l  ++++s + ++ ++ ++   ++ i++++ h  Ge D +v+++   + +++ k+    +   ++p 
  EGE27275.1 114 IIIAGFSQGGAVAYHnVLTNSR---------KLGGLLALSTYFATFEHIQSIAVNHHIAVKIDH--GEFDDIVPKTLGIQAMHHLKSLgltPIYTTYPM 201
                 4578*******99641223333.........344567777777777777777778888888765..999999998877777777776666666667777 PP

        FSH1 199 gHfv 202
                 +H v
  EGE27275.1 202 AHQV 205
                 7765 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.7e-05     0.053      54      94 ..      95     135 ..      60     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.7e-05
                    HHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHH CS
  Abhydrolase_3  54 aalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrard 94 
                    a++  l + + ++g+d ++i++aG S GG  a++ +l   +
     EGE27275.1  95 AMIDELIDDEIAKGIDSQNIIIAGFSQGGAVAYHNVLTNSR 135
                    4555566665699*******************998766555 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.2e-05     0.064      48      92 ..     104     148 ..      76     186 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
  Abhydrolase_5  48 eiikeapklekfvvgGhslGGvvasrfaaeee.kiegvvflasYPe 92 
                    ei k   + ++ +++G s GG+va + +  ++ k+ g++ l++Y +
     EGE27275.1 104 EIAKGI-DSQNIIIAGFSQGGAVAYHNVLTNSrKLGGLLALSTYFA 148
                    444433.4688*************9988888659*******99976 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     9e-05      0.18      21      79 ..      56     126 ..      41     133 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9e-05
                 EEE-HHHH-GTT-EEEHHHHHHHH................S-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHH CS
    Lipase_3  21 lteakellekeggkvhsgfleaye................eslreqvlkelkrllekypeysivvtGHSLGgalA 79 
                 + +  +++  ++g+v+  +++++e                  + e + +e+ + +++++   i+++G S Gga+A
  EGE27275.1  56 HAPKIPVTI-NNGYVMPAWYDILEmslnrkvdvaqiisssAMIDELIDDEIAKGIDSQN---IIIAGFSQGGAVA 126
                 444444433.6999999999999999999999999877666677777777777777777...************9 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0002      0.39       5     106 ..      19     145 ..      16     168 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0002
      DUF676   5 dhLvVlvHGlqgnsaDlelikeqleki.....keklpee.kieflmsennesktfkgidvlgerlaeevlevvkkkkdk.............nkkiSfv 84 
                 +h v+  HGl +++ D+e i  +l ++     +  +p+  ki +  +++ +   + +i ++  +    v +++ ++                 + i + 
  EGE27275.1  19 THTVIWLHGLGASGHDFEPIVPNLGLAkdtavRFIFPHApKIPVTINNGYVMPAWYDILEMSLNRKVDVAQIISSSAMIdeliddeiakgidSQNIIIA 117
                 6999999******9999888888887733322223444468999999999999999999998887777777777776666677888888998889**** PP

      DUF676  85 ghSlGgliaraaiaklkekem......t 106
                 g+S+Gg +a + +   + k        t
  EGE27275.1 118 GFSQGGAVAYHNVLTNSRKLGgllalsT 145
                 ********99999866655545554331 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.9e-05      0.18     170     222 ..     108     161 ..      95     212 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.9e-05
                 TEEEEEEEEEEETHHHHHHHH.HHHH-SS-SEEEEES-SSSSHHHHHHH-SSTT CS
        AXE1 170 evDeeRvavlGasqGGalala.vaalekrikavvadyPfLsdfkRvvelaleea 222
                  +D + + ++G sqGGa+a   v + ++++  ++a   + + f+ + ++a+++ 
  EGE27275.1 108 GIDSQNIIIAGFSQGGAVAYHnVLTNSRKLGGLLALSTYFATFEHIQSIAVNHH 161
                 5899**************985255667788899999999999999999988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1706.48
//
Query:       EGE27276.1  [L=325]
Description: hypothetical protein EA1_03170 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   13.0   0.1       0.29   12.0   0.1    1.5  1  DUF4280   Domain of unknown function (DUF4280)


Domain annotation for each model (and alignments):
>> DUF4280  Domain of unknown function (DUF4280)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.6e-05      0.29      17     101 ..      17     116 ..       8     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
     DUF4280  17 qllvvpeshkviiegklvatekD..........avpkenikpfgkCkskknpkvaaat.......CepkilkeWknvsedvlidgkpaLtekskltCay 98 
                 +++ +p+++++   ++ ++ ++D          a  ++ + p g C ++  ++++          C +k +   kn+s++ +i+  pa+++   ltC++
  EGE27276.1  17 TKVDLPHDENASHGDHWAILTNDitqdvpnwlqAMLDKATLPKGLCPQNSTNNAK--LllgmnepCHIKQILTIKNGSPQAFINAFPAVNSPYGLTCQI 113
                 5778888888888888888888844444444333444447779999888776644..25689999********************************98 PP

     DUF4280  99 gGk 101
                    
  EGE27276.1 114 ERI 116
                 655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2679.83
//
Query:       EGE27277.1  [L=420]
Description: NRAMP family Mn2+ and Fe2+ transporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-07   28.3  29.0    8.5e-07   28.3  29.0    1.4  1  Nramp     Natural resistance-associated macrophage protein
  ------ inclusion threshold ------
      0.058   12.8   0.2      0.058   12.8   0.2    3.9  4  MtrF      Tetrahydromethanopterin S-methyltransferase, F subu


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3  29.0   9.4e-11   8.5e-07       3     274 ..      39     310 ..      37     391 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 9.4e-11
       Nramp   3 tdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllf...gipllvgvlit 98 
                 +++qaGa fG +L +v++l+++l + + +  +     Tg +l++   ++  k+  ++++il ++  i+t +a  + +A+ l  +f   g+  l + +i+
  EGE27277.1  39 SSTQAGALFGWQLAIVIILANVLKYPFFRFGIDYVYDTGDSLIAGYAKKS-KVYLWVYFILSVISSIITLAAVGLMSAVILTFMFpslGLTPLTASVIV 136
                 789******************99999888888888899999998887776.888889999999999888888777778888888865555556666677 PP

       Nramp  99 avlvllllflekggyrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpgkeslllavgilGatvmphnlflhsslvqerkitidrsekee 197
                  +++++ll+   g y +l  + ++++l++a++ +a +f++  + + ++ ++v Ps  +  sl  +v ++G + +p  +   +s+   +ki++  + ++ 
  EGE27277.1 137 LAISWVLLI--AGRYNVLDGITKIIILALAITTVAAVFIAAGKPTVMAVDFVEPSPWNLASLSFIVVVVGWMPAPLEFSVITSMWTAKKIQT--DHTT- 230
                 777777777..8*******************************************9999******************************665..4444. PP

       Nramp 198 alkyeriDtiialivaflinlailivaAavlysggkdvesledaa.....eaLepllGskaasvlFaigLlaaGlsStitgt 274
                   ++ r+D  ++ + + + +++ l++   v y  g++++++ +a+     ++ +  +G +++ +l a+  + + +s+t+t  
  EGE27277.1 231 -HEQGRLDFNVGFATSTILAVLFLALGVYVQYGSGQEIQTAGSAYvgqliDMYTATIG-EWSRLLVAFIAFMCMFSTTLTSG 310
                 .77*****************************66666766555542211156667999.79999999999999999999864 PP

>> MtrF  Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       0.1   9.2e+02      38      57 ..      38      57 ..      34      61 .. 0.78
   2 ?   -0.6   1.0       0.1   9.1e+02      42      59 ..     105     123 ..      99     125 .. 0.71
   3 ?   -0.9   1.0      0.12   1.1e+03      43      60 ..     240     257 ..     238     259 .. 0.81
   4 ?   12.8   0.2   6.5e-06     0.058      30      56 ..     386     412 ..     380     416 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.1
        MtrF 38 satgivGfaiGfvlAllLvv 57
                 +++  G   G  lA+++++
  EGE27277.1 38 VSSTQAGALFGWQLAIVIIL 57
                5667789999******9997 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.1
        MtrF  42 ivGfaiGfvlAllLvv.lP 59 
                 i+  a+G++ A++L    P
  EGE27277.1 105 ITLAAVGLMSAVILTFmFP 123
                 5556899999999987666 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.12
        MtrF  43 vGfaiGfvlAllLvvlPv 60 
                 vGfa   +lA+l++ l v
  EGE27277.1 240 VGFATSTILAVLFLALGV 257
                 799999999999988765 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 6.5e-06
        MtrF  30 eqkLdSGvsatgivGfaiGfvlAllLv 56 
                 eqkL+SG++a +i+G++  + +All v
  EGE27277.1 386 EQKLSSGIQALSIIGLMFLLGFALLYV 412
                 8***************99888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1170  (0.0652574); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 3127.40
//
Query:       EGE27278.1  [L=99]
Description: IS200 family transposase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-29  100.6   0.0    6.5e-29  100.5   0.0    1.0  1  Y1_Tnp    Transposase IS200 like


Domain annotation for each model (and alignments):
>> Y1_Tnp  Transposase IS200 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.0   3.6e-33   6.5e-29      29     121 .]       3      95 ..       1      95 [. 0.96

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 3.6e-33
      Y1_Tnp  29 eiikeiaekkevkilelelmpDHvHllvelppklsiskivkalkgassrlinkefpelkkkklkkeslWqrgYfvstvgeasletvkrYIenq 121
                  i++e+++k+e +++e++++ DHvHllv +pp+++is++v++lkg+ssrli+k++    +k+l++++lW+++Yf+ ++g+a++e +++YIe+q
  EGE27278.1   3 GIFEEVCSKFEAQLVEFDGECDHVHLLVVYPPRVAISSLVNSLKGVSSRLIRKKQYPSISKQLRGGALWSPSYFAGSCGGAPIEIIRQYIEQQ 95 
                 589*************************************************9999889999999**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 750.87
//
Query:       EGE27279.1  [L=48]
Description: hypothetical protein EA1_03190 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 393.03
//
Query:       EGE27280.1  [L=500]
Description: mechanosensitive ion channel family protein MscS [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-38  130.6   1.4    9.5e-38  129.8   1.4    1.4  1  MS_channel      Mechanosensitive ion channel
    1.2e-09   38.3   2.0    3.1e-09   37.0   2.0    1.7  1  BON             BON domain
  ------ inclusion threshold ------
      0.012   15.2   2.5      0.023   14.3   2.5    1.4  1  Virul_fac_BrkB  Virulence factor BrkB
        0.4   10.2   2.7       0.71    9.3   2.7    1.3  1  DUF4400         Domain of unknown function (DUF4400)


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   1.4   2.1e-41   9.5e-38       2     204 ..     194     393 ..     193     395 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.8 bits;  conditional E-value: 2.1e-41
                 .HHHHHHHHHHHHHHHHTTT--..SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEH CS
  MS_channel   2 kilkiliivvgilivlsllgvn..vsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPn 98 
                 + +k++ iv+g++++lsl+g +  +++ll ++G+lg+a+g+a+kd+i+n++a+++l++ +pf+  D+v i+d eG+V+ ++ r+t + t dg+ +  Pn
  EGE27280.1 194 QTVKVIFIVLGLILALSLMGAEaiIGTLLGGAGVLGIAVGFAVKDTIENYIASLMLSIRQPFRAKDHVVINDEEGIVVRLTSRATILMTLDGNHLRLPN 292
                 5789******************99*************************************************************************** PP

                 HHHHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHH CS
  MS_channel  99 sslvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikk 197
                 s++++++i N+++ +++rr++++ gv+ + d   +  ++++ ++a++    vlk+++  +v++e+gds++ +e rv+v + +  +  + +s ++++ k 
  EGE27280.1 293 SEVFKATILNYTK-NPERRFTFELGVDANND---PLAAIKVGLDAIYTLDFVLKEPKAVAVINEVGDSNIILEFRVWVDQ-SKTDFSKARSIAIRETKH 386
                 *************.*****************...9999999***************************************.889999999999999999 PP

                 HHHHHT- CS
  MS_channel 198 ileeegi 204
                 +le +g 
  EGE27280.1 387 ALENQGF 393
                 9998886 PP

>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   2.0   6.9e-13   3.1e-09       2      66 ..      63     125 ..      62     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 6.9e-13
                 HHCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEE CS
         BON   2 DaeiaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelk 66 
                 Da+i +++   + + +gl  ++++V+v++GvV LsG+ ++e+ + +Av++a++++GV  V ++++
  EGE27280.1  63 DAQIYDRIYGIFSEVDGL--SSVKVTVNQGVVKLSGETANEKKATQAVKLANRISGVVTVEDDIS 125
                 666666666666666555..69**************************************99985 PP

>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.5   5.1e-06     0.023      55     136 ..     129     215 ..      94     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.1e-06
  Virul_fac_BrkB  55 gaaevvedilqrllnqaslgllglavll.....wsasggvsalrralnkiygveesrsflrkrllsllllllllvllllslvlsvfl 136
                     ++++ v++++++l+nq+++gl +l +ll     ++ ++++ +  +  +k++++ ++++f+  +l  ++ ++ +++ l+l+l l+ + 
      EGE27280.1 129 DIQDNVTPVVNDLVNQSKAGLKALPLLLvallaFALVAWLGGWLSRREKLWQRITPNPFIAELLAQTVKVIFIVLGLILALSLMGAE 215
                     3789999999999999966666666655566669999999999999999****77789**999999999999999999998887654 PP

>> DUF4400  Domain of unknown function (DUF4400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.7   0.00016      0.71     117     175 ..     152     211 ..     149     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00016
     DUF4400 117 lllwlplflllalvalvDGlvrRdlRrfgagressfvyhhakrlvv.pllvlpwvlyLsl 175
                 l l l+++l++alva + G+ +R+ + ++    ++f+  + ++ v+ +++vl+++l Lsl
  EGE27280.1 152 LPLLLVALLAFALVAWLGGWLSRREKLWQRITPNPFIAELLAQTVKvIFIVLGLILALSL 211
                 67899********************************99877777515566777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3816.50
//
Query:       EGE27281.1  [L=169]
Description: outer membrane protein G1a OmpG1a [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-19   69.7   0.2    4.5e-19   69.2   0.2    1.3  1  NlpE      NlpE N-terminal domain


Domain annotation for each model (and alignments):
>> NlpE  NlpE N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.2   2.5e-23   4.5e-19       1      69 [.      71     142 ..      71     159 .. 0.80

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 2.5e-23
                 EEEEE--TTSSEEEEEEEE-TTSEEEEEEEEESTT-EEEEEEEEEEEETTTSEEEECE...---TCEEEEEC CS
        NlpE   1 YeGtlPCaDCegikttLtLnadgtyelseeylgksekefeekGkfswnekgsiltltp...eedektyykvg 69 
                 Y+GtlPCaDC+g++t+LtLn+dgt+ +++ ylgk + +++++G++ +n  +++++l +     d++ y+ ++
  EGE27281.1  71 YTGTLPCADCSGVQTDLTLNSDGTFMMKQDYLGKPNGQVTTQGTYDINGVDNQYVLLHpndHADTPPYLIYM 142
                 9**********************************************8777777776533233355555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1453.92
//
Query:       EGE27282.1  [L=414]
Description: lipoprotein ABC transporter permease protein LolC/E [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-15   56.5   1.4    4.7e-15   56.5   1.4    1.9  2  MacB_PCD     MacB-like periplasmic core domain
      7e-12   45.7  20.6    3.4e-11   43.5   7.9    3.3  3  FtsX         FtsX-like permease family
  ------ inclusion threshold ------
      0.042   14.0   0.0      0.093   12.9   0.0    1.6  1  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas


Domain annotation for each model (and alignments):
>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   1.4   7.8e-19   4.7e-15       1     168 [.      27     218 ..      27     243 .. 0.69
   2 ?   -2.2   1.5      0.77   4.6e+03       4      15 ..     331     342 ..     318     376 .. 0.68

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 7.8e-19
    MacB_PCD   1 slltvLGiaiGvaaviaivslgeglqasvlsqisdlgnlvtvtpgk..gsgeslsd.pdvealrrevp.veavapvv.....tvrgggsgeeevtvvgv 90 
                 s+++ +G+++Gva++i+++s+++g+ + ++s+i ++   + vt ++        ++ +++e ++ + p v+avap++     + +++g+  ++++v+g 
  EGE27282.1  27 SFISTIGLTLGVAVLITVLSVMNGFDREIKSRILGMVPQASVTSTEilT-----NWqELAEKIKMQNPeVQAVAPYIqlqgmL-TAEGQ-VTGIVVSGI 118
                 89*******************************9784435666654221.....221334444447899******99766542.33332.223889**9 PP

    MacB_PCD  91 dpdyfk.vfgl..klaeGrffteadlrggpnvvvigeelaerlf.pvGdtirl................kpftVvGvled.pp...gsgsalg.....d 160
                 +pdy k v  +  ++ +G   + +dl  g+ ++++ge++  +   ++Gd+++l                k+ft vGv+   ++   g++   g     d
  EGE27282.1 119 EPDYEKqVSIIdeHMTAG---NLDDLHIGEFGIILGESIVSDMGlKLGDKVTLvlpeaspsaagviprfKRFTLVGVY-HiSSeidGMM---GfvrmrD 210
                 9***99544444223445...3367777**************6699*******************999999******7.2122122333...3233555 PP

    MacB_PCD 161 davylplt 168
                   v+l l 
  EGE27282.1 211 AGVMLRLP 218
                 55555433 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.77
    MacB_PCD   4 tvLGiaiGvaav 15 
                 tv+G ++Gva  
  EGE27282.1 331 TVVGTVLGVALA 342
                 444444444433 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2   0.00039       2.3      13      50 ..      14      51 ..       8     116 .. 0.72
   2 ?    1.3   0.7     0.078   4.7e+02      71      86 ..     272     285 ..     252     296 .. 0.52
   3 !   43.5   7.9   5.7e-15   3.4e-11       1      96 []     299     407 ..     299     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00039
        FtsX 13 kkkqvlllllteillitlvalviGlglgllaaqllsdv 50
                +k++   ++++ i +i+ ++l +G+++++ ++ +++ +
  EGE27282.1 14 TKAKRKNGFISFISFISTIGLTLGVAVLITVLSVMNGF 51
                67777777888888888888888877777776665554 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.078
        FtsX  71 iiivlllllallagll 86 
                 i+++l+l+++++a  +
  EGE27282.1 272 IGLLLFLIVVVAA--F 285
                 2222222222222..1 PP

  == domain 3  score: 43.5 bits;  conditional E-value: 5.7e-15
        FtsX   1 kreigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllss........vfs......selkisidlitvliiivlllllallagl 85 
                 k+ i+il+++G++ k +++++++++++i+++++v+G++lg+++a  ++d ll +        +        + l+  i + +v++i   ++ll  l+++
  EGE27282.1 299 KSDIAILKTFGASPKLIMQVFMVQGMIIGVIGTVVGTVLGVALALSINDILLFVsrifgvslF-DgsvyavDFLPSKIEIVDVVLITTASFLLSFLMTI 396
                 5789******************************************99999999555544441.1345567**************************** PP

        FtsX  86 lsiskilkkep 96 
                 +++++++k++p
  EGE27282.1 397 YPALRASKIQP 407
                 *********98 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.093      67     110 ..      72     115 ..      65     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
                  THHHHHHHHHHHHHSSS--HHHHHHHHHHTT--EEEEEEEEE-X CS
  HTH_Tnp_1_2  67 eraevykaLlrkilkgrssvkAieLylkrrgeltdkkkveakle 110
                  e  + +++L +ki+ ++++v+A+  y++ +g lt + +v++ + 
   EGE27282.1  72 EILTNWQELAEKIKMQNPEVQAVAPYIQLQGMLTAEGQVTGIVV 115
                  556789*******************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3292.01
//
Query:       EGE27283.1  [L=225]
Description: lipoprotein ABC transporter ATPase subunit LolD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-31  110.2   0.0    1.4e-31  109.8   0.0    1.2  1  ABC_tran       ABC transporter
    1.8e-07   30.8   0.2     0.0001   21.8   0.0    2.2  2  SMC_N          RecF/RecN/SMC N terminal domain
    2.3e-05   24.0   0.1     0.0027   17.3   0.0    2.2  2  AAA_25         AAA domain
    0.00071   19.3   0.3     0.0014   18.4   0.3    1.5  1  AAA_29         P-loop containing region of AAA domain
     0.0014   18.8   0.1      0.039   14.2   0.1    2.4  1  SbcCD_C        Putative exonuclease SbcCD, C subunit
     0.0015   18.5   0.2     0.0027   17.6   0.2    1.4  1  RsgA_GTPase    RsgA GTPase
     0.0056   17.1   0.5     0.0088   16.4   0.5    1.4  1  AAA_16         AAA ATPase domain
     0.0073   16.6   0.1      0.061   13.6   0.0    2.1  2  AAA_28         AAA domain
     0.0082   16.3   0.3      0.015   15.4   0.3    1.4  1  DUF87          Helicase HerA, central domain
  ------ inclusion threshold ------
       0.02   14.6   0.1        1.5    8.5   0.0    2.2  2  IstB_IS21      IstB-like ATP binding protein
      0.025   14.4   4.3       0.31   10.8   0.7    2.1  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
      0.037   13.4   0.6      0.075   12.4   0.1    1.6  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
      0.041   14.0   0.0      0.095   12.8   0.0    1.7  1  MMR_HSR1       50S ribosome-binding GTPase
      0.049   13.8   0.8       0.23   11.6   0.8    2.0  1  AAA_33         AAA domain
      0.075   13.3   1.2       0.31   11.3   1.2    2.0  1  AAA_22         AAA domain
       0.12   12.6   0.1       0.26   11.5   0.1    1.5  1  Peptidase_M23  Peptidase family M23
       0.14   12.2   0.0       0.21   11.7   0.0    1.4  1  Dynamin_N      Dynamin family
       0.16   11.1   0.0       0.16   11.1   0.0    1.2  1  G-alpha        G-protein alpha subunit
       0.17   11.5   0.1       0.28   10.9   0.1    1.3  1  AAA_24         AAA domain
       0.18   11.7   1.3       0.38   10.6   0.2    2.0  2  NACHT          NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   1.6e-34   1.4e-31       1     136 [.      24     173 ..      24     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 1.6e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren..............es 81 
                 l+ ++l++++ge++aivG++G+GKStLl ll gl +p  Ge++l+g+ l++    ++ e  ++ +g++ q ++l  e ++ en              ++
  EGE27283.1  24 LSGLDLQVQAGERIAIVGSSGSGKSTLLHLLGGLDTPSTGEVWLKGQCLTHlnetKRGELRNRYLGFIYQFHHLLAEFNATENvalpllmrrdvsikQA 122
                 56799**********************************************99977777788889*****************************99999 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++e++++l+++gl +  +++     s+LSgG++qrva+aral+++p l+++DEpt
  EGE27283.1 123 TDEANALLHRVGLGHRLHHRP----SELSGGERQRVAIARALVTRPALVMADEPT 173
                 999*********999666666....*****************************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0032       2.9      27      41 ..      37      51 ..      16      55 .. 0.87
   2 !   21.8   0.0   1.1e-07    0.0001     135     213 ..     138     220 ..      91     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0032
                EEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnll 41
                 aivG+ GSGKs ll
  EGE27283.1 37 IAIVGSSGSGKSTLL 51
                68**********987 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.1e-07
                 T......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEE CS
                 x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvtk 213
                        +LSgGe++ va+a       v + +l++ De   +LD++n ++v ell e + +  + ++++++++++ ++adk++ +++
  EGE27283.1 138 RlhhrpsELSGGERQRVAIARA----LVTRPALVMADEPTGNLDDENAQAVFELLSELQVSfgMALLMVTHDRHLASQADKVLEMKS 220
                 24444449*******9998765....45677899**********************9887755889***************998875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     3e-06    0.0027      31     136 ..      32     129 ..      17     137 .. 0.76
   2 ?    4.8   0.0      0.02        18     161     191 ..     177     207 ..     165     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3e-06
      AAA_25  31 pagelallaGapgtGKttlaldlalava..tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggtllt 127
                  age ++++G +g+GK+tl+  l+   +  tG+ wl+      g +l   +E ++ elr+R+     ++    +ll+   a+ e++ L  ++r++  ++
  EGE27283.1  32 QAGERIAIVGSSGSGKSTLLHLLGGLDTpsTGEVWLK------GQCLTHLNETKRGELRNRYLGFIYQF---HHLLAEFNAT-ENVALPLLMRRDVSIK 120
                 689****************999876655689999977......99*****************9988887...4444444333.3455555556666666 PP

      AAA_25 128 advdaleaa 136
                 +++d+  a 
  EGE27283.1 121 QATDEANAL 129
                 666665554 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.02
      AAA_25 161 snsdvgalvealeriarrtgaavllvhHvgK 191
                 +++ ++a++e l +++  +g a+l+v H ++
  EGE27283.1 177 DDENAQAVFELLSELQVSFGMALLMVTHDRH 207
                 55668***********************776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   1.5e-06    0.0014      16      39 ..      28      51 ..      14      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.5e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                +++++  + + ++G sGsGKSTll
  EGE27283.1 28 DLQVQAGERIAIVGSSGSGKSTLL 51
                55666455899************8 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   4.4e-05     0.039      26      89 ..     139     189 ..     115     190 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.4e-05
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 l+++ ++lSGGe+q    +a+a al           ++++lv+ DE  ++lD+e++++++ell 
  EGE27283.1 139 LHHRPSELSGGERQR---VAIARAL----------VTRPALVMADEPTGNLDDENAQAVFELLS 189
                 667777888888843...3444332..........34689*********************986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2     3e-06    0.0027      98     130 ..      33      65 ..       5      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3e-06
                  TTSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelktgev 130
                  +++ +++vG+SG GKStL+  l + ++ +tgev
   EGE27283.1  33 AGERIAIVGSSGSGKSTLLHLLGGLDTPSTGEV 65 
                  348899****************99989999887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.5   9.8e-06    0.0088      20     107 ..      32     142 ..      21     212 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.8e-06
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekd..ggiflrgkcdql....esa...ipysalaqalareellrqllde............aesaeleaw 97 
                  +g  e + ++G sG+GKs+l+  l   l +   g ++l+g+c  +    +++    +y+ ++ ++   +ll++ ++                      
  EGE27283.1  32 QAG--ERIAIVGSSGSGKSTLLHLLGG-LDTPstGEVWLKGQCLTHlnetKRGelrNRYLGFIYQF-H-HLLAEFNATenvalpllmrrdV-------- 117
                 444..6789*************88874.44443344669999999865442226656666666666.3.5555554442333222222220........ PP

      AAA_16  98 rekleeala.....................a 107
                       +++                      
  EGE27283.1 118 ------SIKqatdeanallhrvglghrlhhR 142
                 ......1111223333444444455555552 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   6.8e-05     0.061       1      26 [.      36      61 ..      36     104 .. 0.85
   2 ?    1.0   0.0      0.51   4.6e+02      98     155 ..     144     202 ..     123     207 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.8e-05
      AAA_28  1 kivitGgestGKTtlleaLaargypv 26
                +i+i+G +++GK+tll  L   ++p 
  EGE27283.1 36 RIAIVGSSGSGKSTLLHLLGGLDTPS 61
                79***************998555444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.51
      AAA_28  98 aelea.aarekrydlvfllppapeidddgeRredleereaiderlrealrelgipviiv 155
                  el   + ++  +++ ++++pa  + d  +   d+e+++a+ e+l e+   +g+ ++ v
  EGE27283.1 144 SELSGgERQRVAIARALVTRPALVMADEPTGNLDDENAQAVFELLSELQVSFGMALLMV 202
                 5555434444556678888888888555555679999*******999999999888777 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   1.6e-05     0.015      16      43 ..      27      54 ..      10      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.6e-05
       DUF87 16 ldlnklvtrHlAilgsTGsGKSntvavL 43
                ldl+    +++Ai+gs+GsGKS++  +L
  EGE27283.1 27 LDLQVQAGERIAIVGSSGSGKSTLLHLL 54
                7777777899*************99876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0017       1.5      38      67 ..      24      54 ..       8      62 .. 0.77
   2 ?    4.0   0.0      0.04        36     104     148 ..     159     205 ..     144     219 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
   IstB_IS21 38 Latlsf.iekkenivllGpsGvGKshlaial 67
                L +l+  +++ e i+++G sG GKs l   l
  EGE27283.1 24 LSGLDLqVQAGERIAIVGSSGSGKSTLLHLL 54
                55555337899**************986655 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.04
   IstB_IS21 104 krllkvdllilDdlgllpldqaeaellfeviekr...yerrsiiitsn 148
                 + +++++l++ D+  + +ld+++a+ +fe++++    ++ + +++t +
  EGE27283.1 159 ALVTRPALVMADE-PTGNLDDENAQAVFELLSELqvsFGMALLMVTHD 205
                 3345666666666.57899***********997522245555555555 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   0.00035      0.31       3      22 ..      38      57 ..      37      65 .. 0.87
   2 ?    5.2   0.1     0.018        16     174     301 ..     101     208 ..      64     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +++G  gsGKS+LL +l +l
  EGE27283.1 38 AIVGSSGSGKSTLLHLLGGL 57
                79************999887 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.018
      AAA_21 174 dyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP 272
                  +++++  ++ll r+  s+k++ +e+ +l++++ l  + ++r+                  +elS G ++  a++ al  ++   +l+  DEp  +L+ 
  EGE27283.1 101 FNATENVALPLLMRRDVSIKQATDEANALLHRVGLGHRLHHRP------------------SELSGGERQRVAIARALVTRP---ALVMADEPTGNLDD 178
                 5556666677777888899999999999999999999999995..................66********99999999988...************** PP

      AAA_21 273 kllrrllellkelsr.ngaQviltTHSpll 301
                 +    ++ell+el+   g  ++++TH+ +l
  EGE27283.1 179 ENAQAVFELLSELQVsFGMALLMVTHDRHL 208
                 **********55544589999999999776 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.4e-05     0.075      34      58 ..      28      53 ..      15      54 .. 0.82
   2 ?   -1.8   0.0       1.7   1.6e+03     157     209 ..     118     171 ..      99     210 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.4e-05
                  EGGGS-..SEEEE--TTSSHHHHHHH CS
  FtsK_SpoIIIE 34 dlkkma.shllvaGatgsGKStalnt 58
                  dl++ a   + ++G++gsGKSt l+ 
    EGE27283.1 28 DLQVQAgERIAIVGSSGSGKSTLLHL 53
                  55555556899************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
                   ...................-----------B--.---EEEEEEC-HHHHHHHHH CS
  FtsK_SpoIIIE 157 ddlaaeneritsLsnqgpsygvhvlvtagrele.krpslvvivderieLrlaap 209
                   + ++a +e + +L  +g+    h   ++ +  e +r ++   +  r +L +a++
    EGE27283.1 118 SIKQATDEANALLHRVGLGHRLHHRPSELSGGErQRVAIARALVTRPALVMADE 171
                   455555555555555555555555555555444455555555555555555554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011     0.095       1      19 [.      36      54 ..      36      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
                EEEEEESTTSSHHHHHHHH CS
    MMR_HSR1  1 evaivGrpNvGKStLinal 19
                ++aivG + +GKStL+  l
  EGE27283.1 36 RIAIVGSSGSGKSTLLHLL 54
                69*************9877 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.8   0.00026      0.23       3      19 ..      38      54 ..      37     215 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00026
      AAA_33  3 llvGlpGsGKstlaerl 19
                 +vG +GsGKstl++ l
  EGE27283.1 38 AIVGSSGSGKSTLLHLL 54
                589**********9876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   0.00034      0.31       8      28 ..      37      57 ..      32     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00034
      AAA_22  8 lvvtGesGtGKTtllrrlleq 28
                ++++G sG+GK+tll  l   
  EGE27283.1 37 IAIVGSSGSGKSTLLHLLGGL 57
                79************9987655 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00029      0.26      37      84 ..       2      52 ..       1      55 [. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00029
                   EEEEECTCEEEEEEE..ESEESS-.TTEEE-TTCEEEEEBSTSSCSSSEEE CS
  Peptidase_M23 37 viidhgdgystlyah..lskisvk.egqkVkaGqvIGtvgstgrstgphLh 84
                   + i h++++s +y    ++++ ++    +V+aG+ I+ vgs+g  +   Lh
     EGE27283.1  2 TTILHAKNISKVYDEgkIKTTVLSgLDLQVQAGERIAIVGSSGSGKSTLLH 52
                   56788888888998732333334456789**************87777777 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00023      0.21       1      26 [.      37      62 ..      37     128 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
                EEEEEBTTTTHHHHHHHHHTS--S-- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilpr 26
                ia+vGs  sGKS++l  L g d   +
  EGE27283.1 37 IAIVGSSGSGKSTLLHLLGGLDTPST 62
                89*************99988875444 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00018      0.16      25      50 ..      36      61 ..       8     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
                EEEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 25 kllllGqseSGKsTilkqlkllykkg 50
                ++ ++G+s+SGKsT+l  l  l +++
  EGE27283.1 36 RIAIVGSSGSGKSTLLHLLGGLDTPS 61
                899************99887777666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00031      0.28       3      22 ..      35      54 ..      33      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00031
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                 +i+i+G+sg+GK+tl+  l
  EGE27283.1 35 ERIAIVGSSGSGKSTLLHLL 54
                68*************98766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00043      0.38       2      18 ..      36      52 ..      35      56 .. 0.89
   2 ?   -0.3   0.1         1   9.2e+02      90     112 ..     169     191 ..      84     217 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00043
                CEEEEC-TTTCHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlq 18
                 +++ G +GsGK+tLl+
  EGE27283.1 36 RIAIVGSSGSGKSTLLH 52
                589************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1
                 STT-SS-TCH.........HHHH CS
       NACHT  90 lDelvtdlgqkekqpvrtlLsel 112
                 +De    l+ +++q+v +lLsel
  EGE27283.1 169 ADEPTGNLDDENAQAVFELLSEL 191
                 45555555556666777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 1668.75
//
Query:       EGE27284.1  [L=114]
Description: hypothetical protein EA1_03220 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-26   90.4   1.4    1.1e-25   89.7   1.4    1.3  1  DUF3144   Protein of unknown function (DUF3144)
  ------ inclusion threshold ------
       0.11   12.6   0.5       0.11   12.6   0.5    1.9  2  PHB_acc   PHB accumulation regulatory domain


Domain annotation for each model (and alignments):
>> DUF3144  Protein of unknown function (DUF3144)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   1.4   1.2e-29   1.1e-25       1      77 []      19      96 ..      19      96 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 1.2e-29
     DUF3144  1 fferadefIelANe.qakeaeageVsaallyAaARfnafvaaskfeskedlaaekeealeyfveeyremLeenledyi 77
                fferad++I+lAN+  + +++ag+V+a+l yAaARf+  +a++ f +++dla+ek++++++++e+y++mL+enle+yi
  EGE27284.1 19 FFERADAVITLANSqLSPSSHAGQVAASLNYAAARFAISAATIGFVKGSDLAKEKDDIIKFYTEKYQQMLAENLEQYI 96
                9*************8899***********************************************************8 PP

>> PHB_acc  PHB accumulation regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3      0.25   2.2e+03      34      40 .]      11      17 ..      10      17 .. 0.80
   2 ?   12.6   0.5   1.2e-05      0.11       8      32 ..      75      99 ..      74     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.25
     PHB_acc 34 dmQeqmq 40
                + Q+qm+
  EGE27284.1 11 EFQDQMH 17
                7899996 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.2e-05
     PHB_acc  8 qlIrfYgpamQgmmgsYLEqSlemF 32
                ++I+fY +  Q m++  LEq +e+F
  EGE27284.1 75 DIIKFYTEKYQQMLAENLEQYIENF 99
                69******************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1214  (0.0677115); expected 358.6 (0.02)
Passed bias filter:                      686  (0.038262); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 872.63
//
Query:       EGE27285.1  [L=386]
Description: S-adenosylmethionine synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-66  220.4   0.8    1.3e-65  219.5   0.1    1.8  2  S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal 
    2.2e-47  160.2   0.0    5.4e-47  159.0   0.0    1.7  1  S-AdoMet_synt_M  S-adenosylmethionine synthetase, central dom
    1.1e-41  141.5   1.0    1.7e-41  140.9   0.3    1.7  2  S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal 


Domain annotation for each model (and alignments):
>> S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.56   3.3e+03      82     102 ..     188     208 ..     166     226 .. 0.58
   2 !  219.5   0.1   2.2e-69   1.3e-65       1     138 []     234     375 ..     234     375 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.56
                      EE-S-BSS-HHHHHHHHHHH- CS
  S-AdoMet_synt_C  82 etfgtekvseeeiaeivkevf 102
                      +t+++  +s+++++e+v e +
       EGE27285.1 188 STQHNPDISQKQLQEAVMEEI 208
                      344444566777777665543 PP

  == domain 2  score: 219.5 bits;  conditional E-value: 2.2e-69
                      S-TTTTS-EETTS-TTTTTTTTSS---S---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEEEEE-S-BSS-HHHH CS
  S-AdoMet_synt_C   1 iGgpkgdaGltgrkiivdtYgglaahgggafsgKdptkvDrsaayaaryvaknlvaaglakkvevqlsYaigvaepvsisvetfgtekvseeei 94 
                      iGgp gdaGltgrkiivdtYgg+a+hgggafsgKdp+kvDrsaaya ryvakn+vaagla+++evq+sYaigvaep+sisv+tf+t+k+s+++i
       EGE27285.1 234 IGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCEVQISYAIGVAEPTSISVNTFNTGKISNADI 327
                      8********************************************************************************************* PP

                      HHHHHHH----HHHHHHHHTTTSS--TGGGSS-SSS--....T-TTS. CS
  S-AdoMet_synt_C  95 aeivkevfdlrpaaiieeldLkkpiykktaayghfgre....elpwek 138
                       ++++++fdlrp +i+ +l+L +p+y+ ta+yghfgr+     ++wek
       EGE27285.1 328 IKLIRTHFDLRPYGITGMLNLLQPMYEITASYGHFGRQgvdtAFTWEK 375
                      *************************************98877789997 PP

>> S-AdoMet_synt_M  S-adenosylmethionine synthetase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   0.0     9e-51   5.4e-47       1     120 []     114     232 ..     114     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 9e-51
  S-AdoMet_synt_M   1 eigAgDqGimfGYAtdeteelmPlpillahklaerlaelrkegeleylrpDaKsqvtveYeeelkpvrvdtvvistqhdeevsqeklredlkek 94 
                      ++gAgDqG+mfGYAt+et+ lmP+pi+l+h+l+er a+lrk+g+l++lrpDaK+qvt++Y+e+++p+ vd++v+stqh++++sq++l+e+++e+
       EGE27285.1 114 DQGAGDQGLMFGYATNETDVLMPAPIQLSHRLMERQAQLRKDGTLPWLRPDAKAQVTLRYDEHHQPLAVDALVLSTQHNPDISQKQLQEAVMEE 207
                      58**********************************************************99******************************** PP

  S-AdoMet_synt_M  95 vikkvlkeelldekktkllinptGkF 120
                      +ikkv++++ll++ +t ++inptGkF
       EGE27285.1 208 IIKKVIPSQLLHK-DTLYHINPTGKF 232
                      ******9998866.6**********9 PP

>> S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.9   0.3   2.9e-45   1.7e-41       3      99 .]       5     101 ..       3     101 .. 0.99
   2 ?   -3.6   0.0         3   1.8e+04      19      32 ..     198     211 ..     189     224 .. 0.58

  Alignments for each domain:
  == domain 1  score: 140.9 bits;  conditional E-value: 2.9e-45
  S-AdoMet_synt_N   3 lftsesVseGHPDkvadqisdaildailkedpkarvacetlvttglvvvageittkakvdiekivrevikeigYekeelgfdaktcevlvalee 96 
                      +ftsesVseGHPDk+adqisda+ldail++d++arvacetlv+tg vv+agei+t+a++d+e+ivr+++++igY++++lgfd +tc+v++++ +
       EGE27285.1   5 VFTSESVSEGHPDKMADQISDALLDAILTQDKDARVACETLVKTGAVVLAGEISTHANIDVETIVRNTVNKIGYNHSDLGFDGSTCAVINMIGK 98 
                      7********************************************************************************************* PP

  S-AdoMet_synt_N  97 qsp 99 
                      qsp
       EGE27285.1  99 QSP 101
                      **7 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3
  S-AdoMet_synt_N  19 dqisdaildailke 32 
                       q+ +a++++i+k+
       EGE27285.1 198 KQLQEAVMEEIIKK 211
                      44444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2879.93
//
Query:       EGE27286.1  [L=220]
Description: hypothetical protein EA1_03230 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-32  110.1  13.0    9.9e-32  109.8  13.0    1.1  1  DUF2062   Uncharacterized protein conserved in bacteria (DUF2
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.16   12.1   0.0    1.2  1  UPF0242   Uncharacterised protein family (UPF0242) N-terminus


Domain annotation for each model (and alignments):
>> DUF2062  Uncharacterized protein conserved in bacteria (DUF2062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8  13.0   1.1e-35   9.9e-32       3     148 .]      24     178 ..      22     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 1.1e-35
     DUF2062   3 llrylllrllrlhlsprsvarGvaiGvfigflPifglqmllaallalllrvnlpaavagtwisnPltlppiyylayklGalllgeeaeal......... 92 
                 +++++l ++++++ ++ s+ r+v++Gv ++f+P+ ++qm+la+l al++r+n+p+a+a+twi+nPlt +pi++lay lGa+llge+   l         
  EGE27286.1  24 VFAPFLADPRLWQINRSSLGRAVYVGVLAAFFPL-PGQMPLALLGALFTRANIPMAIALTWITNPLTAIPIFWLAYSLGAMLLGEPIIGLraigiiltd 121
                 68999*****************************.***************************************************9999******999 PP

     DUF2062  93 ..slseleelglewlleslleiglplllGslilglilallgYflvlllwrlyrrrrrk 148
                    + + + ++   ++++    ++++ +G+++ ++++++++ ++++ +w+++  + ++
  EGE27286.1 122 ftLWVTADGIN-PFTAHRHIFSWQAMAIGLFLSAITTSIVLGLAFRAFWNYRTIKDWQ 178
                 98444444444.445566667899****************************999985 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.8e-05      0.16      32      96 ..     142     208 ..     130     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
     UPF0242  32 sWsllsiGlllaaaGsLlllllllk..wekalkekleksk.leekeaklteldeglktkeealeelqe 96 
                 sW+ ++iGl+l+a+ + ++l l+++  w+    + +++ +  +++  k + ++ g+k+ e+ l+ + +
  EGE27286.1 142 SWQAMAIGLFLSAITTSIVLGLAFRafWNYRTIKDWQARHgYNANAPKFKHQK-GHKQREQDLKTRYN 208
                 8**********999887777666654477777777876542677778888887.99999999987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1750.32
//
Query:       EGE27287.1  [L=195]
Description: oligoribonuclease [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-34  117.9   0.0    7.5e-34  117.6   0.0    1.0  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   4.2e-38   7.5e-34       1     164 [.      21     182 ..      21     183 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 4.2e-38
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCC..EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEE CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggen..eigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvg 97 
                 ++iDlE+tgld+ ++d iieia i++d ++n  ++g+   + v ++ l++++d+  + +g +++  ++++s+ + ++++++ +++l+++v  + ++ +g
  EGE27287.1  21 IWIDLEMTGLDT-QQDDIIEIATIVTDDELNilAEGPVLAIKVSDVVLNRMDDWNKNQHGQSGLIDRVRRSTITLADAEAQTIEFLSKWVDAGISPMCG 118
                 7***********.9************************************************************************************* PP

                 SSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSSTSSHHHHHHHHHHH CS
     RNase_T  98 flraadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgraHrAldDaeatakl 164
                 ++  +d+r+l +++pk + ++++++ld++++kel++++ +++a ++++++  + H AldD++ ++++
  EGE27287.1 119 NSICQDRRFLARQMPKLERYFHYRNLDVSSIKELCYRWRPDIATGYQKTG--T-HLALDDIRDSIRE 182
                 ********************************************777666..4.********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1405.18
//
Query:       EGE27288.1  [L=192]
Description: YceI family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-35  120.3   0.0    1.1e-34  120.1   0.0    1.0  1  YceI      YceI-like domain


Domain annotation for each model (and alignments):
>> YceI  YceI-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.0   6.1e-39   1.1e-34       1     146 []      21     187 ..      21     187 .. 0.92

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 6.1e-39
                 EEE-CCC-EEEE.........-EEEEECTECCEEEE..TTT.EEEEEEEEGGGEESS.HCHHHHHHCTCTT-TTT--EEEECCCCEE............ CS
        YceI   1 Ytldpahssvtftvkhlgvs.kvtGrfkkvsgelsvdeddpessvevtidvasidtgnakrdehlksadffdvakyPtatFvstsve..........ak 88 
                 Y+ldp h++ +f+++h+g+s +v G f ++sg +++d+++ ++s++++i+v+s+++ ++ + +hlk+ad+f+++++Pt++Fvst++           ++
  EGE27288.1  21 YELDPYHTNARFSIDHFGTStNVAG-FYELSGLMQFDRAAGKGSIDISIPVSSLTASSSLFTQHLKGADLFNIEQHPTMRFVSTKFYfkgtgknrqlQS 118
                 99***************99879999.9999******85555899************99999************************8888********77 PP

                 EEEEEEETTEEEEEEEEEEEEEEE.........CCEECEEEEEGGGGTC....TTTC-SEEEEEEEEEE CS
        YceI  89 vtGdLtikGvtkpvtlpvtvngaa.........agfsatgtidrtdFGlkr..galvgdeveleielea 146
                 v+G+Lt+ G+t+pvtl++t  ++          +g++ t++idrt++G+++  ++ + ++v+++i++ea
  EGE27288.1 119 VSGNLTLLGKTHPVTLTATKFNCYqspmlntevCGGDFTTKIDRTKWGMNYlvDMGMPKDVRIDIQVEA 187
                 *******************987533577777778899*************9**8899*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1433.84
//
Query:       EGE27289.1  [L=265]
Description: UDP-2,3-diacylglucosamine hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-06   26.9   0.4    5.9e-06   26.9   0.4    1.7  2  Metallophos    Calcineurin-like phosphoesterase
    5.3e-05   23.5   2.7    0.00041   20.6   2.7    2.1  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.4   6.6e-10   5.9e-06       4     204 .]      18     222 ..      15     222 .. 0.61
   2 ?   -3.1   0.1         1   9.1e+03      36      48 ..     233     243 ..     227     257 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 6.6e-10
                  EEEESBTB.TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS................HHHHHHHHHHHHHHHH......TSEEEEEC-TTSCHH CS
  Metallophos   4 lvigDlHl.algggqlddllkllddllreekpdlvllaGDlvdrg................dlekellellaalvky......pipvylllGNHegfe 78 
                  ++++DlHl   ++    +++ ll+dl++ ++ + + l+GD+ d                   + + ++        +      +i++ +++GN +   
   EGE27289.1  18 VFVSDLHLsPMTPRLTKAFVHLLEDLKNLPNLNSLYLLGDWLDAWlgddtytrlsddqkaiHWLYPVITA------LnalannHIQILVMRGNRD--- 106
                  79*******9999*************999999999999**888877777788886443333222223333......2444666999*********... PP

                  HHHHHHHHHHHHHHHHHEHHHCEEETSEEEE..EETTE.EEEEEEESECEEETHHHHHHHHHHHSCHHHHCC..HHHHHH........HHHHTTCSEE CS
  Metallophos  79 eellnkygylgifsepwrsdaevfnnlplas..lgsgs.lkvlllhGgspellvsldklgslnleleapepg..dewlkd........lekrekadwv 163
                                ++ ++ +++f ++ +++   ++++  ++ l hG+        ++ +s+++++ ++ +      l++        l +  ++   
   EGE27289.1 107 -------------FMIRQTLCDTFKGVLIQEpyPINTTkHRIRLEHGD-----ALCTDDTSYQRYRAIINHPmtRMVLNQlplalrkkLANNIQNHSH 186
                  .............55555556666666666654333346799999999.....233444455555555544456444444444211122222333333 PP

                  EEEESSESS.CSSSCSCCHHHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 164 ivlgHsply.rgsgylfgdealedllkkygvdlvisGHtHvy 204
                  +  +H+p+   +  ++  d a+       + d+ ++GHtH++
   EGE27289.1 187 HQKSHKPPKiMNVNPSAVDAAM------IDCDILLHGHTHRP 222
                  3334555553333333333333......369999******85 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
                  EEEEESTSSSSSH CS
  Metallophos  36 lvllaGDlvdrgd 48 
                  +vl  GD+ d+g 
   EGE27289.1 233 IVL--GDWRDDGR 243
                  444..99999983 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   2.7   4.5e-08   0.00041       3     144 ..      17     236 ..      15     248 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4.5e-08
  Metallophos_2   3 laiiSDlH......snldaleavlealke.vgvdaiihaGD...................leeeep.......evleellela.pvlaVrGNnD.. 62 
                     +++SDlH      +  +a  ++le+lk+  +++ ++++GD                   +            ++l++l +   ++l+ rGN D  
     EGE27289.1  17 AVFVSDLHlspmtpRLTKAFVHLLEDLKNlPNLNSLYLLGDwldawlgddtytrlsddqkA----IhwlypviTALNALANNHiQILVMRGNRDfm 108
                    5789****999999888888888999998546799******77777777666654444440....1444433356666666559**********88 PP

  Metallophos_2  63 .....................................eev.veedvlreaaelgtdlpeeaelelagekvlliHgdpl.................. 102
                                                         ++   ++ ++  ++++++ + ++  l l                               
     EGE27289.1 109 irqtlcdtfkgvliqepypinttkhrirlehgdalctDDTsYQRYRAIINHPMTRMVLNQLPLAL------------Rkklanniqnhshhqkshk 192
                    88888888888888776666666555555555555542222444444444444444445555544............0333333333333445677 PP

  Metallophos_2 103 ..gvkdalaellkeaeegsdvvvcGHtHvpevekeggvlvvnPG 144
                      + ++ + +++++a+ + d++++GHtH+p+v ++g  + +  G
     EGE27289.1 193 ppKIMNVNPSAVDAAMIDCDILLHGHTHRPNVHHHGRKIRIVLG 236
                    76444444444444444566***************976666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1927.24
//
Query:       EGE27290.1  [L=169]
Description: peptidyl-prolyl cis-trans isomerase B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-49  166.9   0.4    4.7e-49  166.7   0.4    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.4   2.6e-53   4.7e-49       2     158 .]       6     166 ..       5     166 .. 0.94

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 2.6e-53
  Pro_isomerase   2 vdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEitsklkhkrGalamartg 97 
                    v+++t   G+i+ieL+a+kaP+tv+nFl++v++g+Ydg++FhRvi+gfm+qgG ++++++    ek++g+   +i++E ++ lk++ G +amart 
     EGE27290.1   6 VEFDTT-FGQIKIELNAEKAPITVANFLDYVESGHYDGLIFHRVIDGFMIQGGGMDAQMN----EKRTGT---PIKNEADNGLKNTVGSIAMART- 92 
                    899995.***********************************************887744....334554...8*********************. PP

  Pro_isomerase  98 kepnsagsqFfItlkeaphldg........kytvFGkVveGmdvvekiekvetde.....erpkknvkivsaev 158
                    ++p+sa+ qFfI++k++++l++        +ytvFG+V++Gmdvv++i+ v+t +     + p+++++i+sa+v
     EGE27290.1  93 SDPHSATAQFFINVKDNDFLNHssptpqgwGYTVFGQVIDGMDVVNQIKGVPTGRfgyhaDVPNEPIVINSAKV 166
                    79****************************************************9*9*99999*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1316.93
//
Query:       EGE27291.1  [L=589]
Description: glutaminyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.7e-106  353.9   0.0   7.1e-106  353.6   0.0    1.1  1  tRNA-synt_1c    tRNA synthetases class I (E and Q), catalytic
    7.4e-43  146.4   0.0      2e-42  145.0   0.0    1.7  1  tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codo
  ------ inclusion threshold ------
      0.092   12.8   0.1       0.24   11.5   0.1    1.7  1  DUF2322         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.6   0.0  1.2e-109  7.1e-106       2     300 ..      28     324 ..      27     338 .. 0.96

  Alignments for each domain:
  == domain 1  score: 353.6 bits;  conditional E-value: 1.2e-109
                   -EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE- CS
  tRNA-synt_1c   2 VrtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvce 98 
                   + tRf+PeP+GyLHiGh k+++ln++ A +++G ++lR++DT+p+ ek+++++ i+ed+ wlg++w   ++y+s +fdel+ +a++Lik+G AYv+ 
    EGE27291.1  28 ILTRFPPEPNGYLHIGHVKSICLNFGVANEFGGACNLRFDDTNPTAEKQDFVDGIKEDVRWLGFEWAGDVRYASSYFDELYGWAVQLIKQGDAYVDL 124
                   78*********************************************************************************************** PP

                   STHHHHHHHHCCSS..HSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSS.GGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHHHH CS
  tRNA-synt_1c  99 ctkeeleeereeqe..klgskerdrydeenlklfeeemkkgkaegekavvRlkideess.vefrDlvrgriklepqeihdlvivksdiyPtYdfavv 192
                   ++ +e++++r++ +   + s++rd ++eenl+ f e+m++gk+++++av+R+kid+ ++  ++rD+v++r+  ++   h++++++++iyP+Ydfa++
    EGE27291.1 125 QSIDEIRANRGSFTevGVPSPQRDASIEENLARF-EDMRQGKFADGEAVLRAKIDMTHPnLNMRDPVIYRVMHAH---HHQTGDQWCIYPMYDFAHP 217
                   ***********98855677999************.9***************************************...******************* PP

                   HHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHH CS
  tRNA-synt_1c 193 idDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftre 289
                   ++Da e+ith+l+t ef+d +p y+w+++++g +vpp ++e++rln+++++ SKRkl+ lvd   v +wdd+r++++ ++rr+G+tpe+ r++++r+
    EGE27291.1 218 LSDAYEGITHSLCTLEFEDHRPFYDWVVQKVGFDVPPRQYEFSRLNIDHTLTSKRKLKRLVDMGVVSGWDDPRMPTVAGMRRRGYTPEGLRDFCERI 314
                   ************************************************************************************************* PP

                   CCCSSS.EEEE CS
  tRNA-synt_1c 290 eliksfdlnre 300
                   +++ks    + 
    EGE27291.1 315 GITKSE-GLVD 324
                   ****98.3344 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.0   3.3e-46     2e-42       2     174 .]     341     565 ..     340     565 .. 0.86

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 3.3e-46
  tRNA-synt_1c_C   2 pRymaVldpvkvtienl............peg.......keeelevplhpknpelgtrkvpfskeiyiereD........akrlkpg.eevrLke 68 
                      R maVl+p+kvti+n+            + +       +  +l+ p+hp+  ++g+r++pf+k+iyi+++D        +krl+p+  e+rL++
      EGE27291.1 341 ARGMAVLRPLKVTITNFddavskfnelknE-KtlaefdgEALWLTQPKHPH-LNMGERQIPFTKTIYIDATDyeieppagYKRLSPNnPEIRLRN 433
                     599*************87777777776641.15666777999*********.8*********************************868****** PP

  tRNA-synt_1c_C  69 lynikveevekdesgevtelkleydgesleea...rkkkgiihWvsaeeaveaevrlYdrL.fk....eeede...................... 133
                      y++kv+e ++d++g+v+el +++d+ +l+++   rk+kg+ihWvsa++ v+a vrlYd+L  +    +   +                      
      EGE27291.1 434 SYILKVNEHKTDDAGNVIELIATIDEHTLGNNpegRKVKGVIHWVSATHGVTAFVRLYDHLlLEedeiD---Aslaqnalgadadadadadafwi 525
                     *****************************999*****************************65545550...34555555555555566755444 PP

  tRNA-synt_1c_C 134 dfllnpdslkvleeglaepalanlkkgdivQfeRiGyfrvd 174
                     +  lnp+sl+v  ++++ep+la++++g+++QfeR+ yf++d
      EGE27291.1 526 NRHLNPNSLTV-YQAVVEPDLAKAAAGERFQFERESYFIAD 565
                     444******98.7*************************997 PP

>> DUF2322  Uncharacterized protein conserved in bacteria (DUF2322)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.9e-05      0.24      26      75 ..     474     523 ..     467     550 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
     DUF2322  26 vvatienkpGklgSlkvYnalaqkfgaldakaAeeglelfaehtadakan 75 
                 v++ + +++G +  +++Y +l  + +++da+ A+++l   a+  ada a 
  EGE27291.1 474 VIHWVSATHGVTAFVRLYDHLLLEEDEIDASLAQNALGADADADADADAF 523
                 78999************************************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4168.08
//
Query:       EGE27292.1  [L=618]
Description: putative DNA helicase/AAA ATPase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-50  171.1   3.5    2.8e-46  158.4   3.5    2.5  1  PIF1             PIF1-like helicase
    3.3e-19   69.4   0.0    7.2e-19   68.3   0.0    1.6  1  AAA_30           AAA domain
    7.8e-19   67.9   0.6    3.7e-18   65.8   0.6    2.2  1  HTH_40           Helix-turn-helix domain
    2.4e-10   40.9   3.3    3.1e-10   40.6   0.0    2.7  3  AAA_19           AAA domain
    2.4e-07   31.1   0.1    8.4e-07   29.3   0.0    1.9  1  AAA_22           AAA domain
    2.2e-05   24.3   0.9      0.013   15.2   0.8    3.6  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    2.8e-05   24.2   0.5    0.00042   20.4   0.3    2.7  2  AAA_14           AAA domain
    4.2e-05   23.6   0.0    0.00011   22.3   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00012   21.8   0.0    0.00046   20.0   0.0    2.0  1  SH3_13           ATP-dependent RecD-like DNA helicase SH3 dom
    0.00059   20.3   0.1     0.0046   17.4   0.0    2.3  2  AAA              ATPase family associated with various cellul
    0.00067   19.6   0.3       0.04   13.8   0.3    2.5  1  NTPase_1         NTPase
     0.0019   18.0   3.6        1.2    8.9   0.1    3.2  3  DEAD             DEAD/DEAH box helicase
     0.0019   17.5   0.6     0.0049   16.1   0.4    1.8  1  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0034   16.7   3.0       0.32   10.2   0.0    3.1  3  KAP_NTPase       KAP family P-loop domain
      0.004   16.9   0.0     0.0092   15.7   0.0    1.6  1  AAA_24           AAA domain
     0.0089   15.6   0.1      0.029   13.9   0.1    1.9  1  AAA_7            P-loop containing dynein motor region
  ------ inclusion threshold ------
       0.01   16.2   0.1      0.044   14.2   0.0    2.1  2  AAA_16           AAA ATPase domain
       0.02   14.7   0.0      0.054   13.3   0.0    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
      0.021   14.3   0.2      0.074   12.5   0.2    2.0  1  PhoH             PhoH-like protein
      0.024   14.5   0.3      0.072   12.9   0.0    1.9  2  Helicase_RecD    Helicase
      0.024   13.9   0.0      0.061   12.6   0.0    1.6  1  Zeta_toxin       Zeta toxin
      0.024   14.3   0.1        2.7    7.7   0.0    2.5  2  IstB_IS21        IstB-like ATP binding protein
      0.025   14.0   0.6       0.24   10.8   0.6    2.2  1  TniB             Bacterial TniB protein
      0.036   14.1   0.1       0.12   12.4   0.1    1.8  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.04   13.6   0.2         10    5.8   0.0    2.5  2  PRK              Phosphoribulokinase / Uridine kinase family
      0.046   11.9   1.5      0.086   11.0   0.1    1.9  2  FPP              Filament-like plant protein, long coiled-coi
      0.053   13.4   0.8       0.26   11.1   0.8    2.1  1  ATPase_2         ATPase domain predominantly from Archaea
       0.08   13.1   0.0       0.39   10.8   0.0    2.1  1  Sigma54_activ_2  Sigma-54 interaction domain
       0.12   12.2   0.0        0.4   10.6   0.0    1.9  1  NACHT            NACHT domain
       0.13   11.6   1.9        4.7    6.5   0.0    2.8  3  ATPase           KaiC
       0.26   10.8   7.4        2.9    7.3   7.2    2.8  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
        1.8    9.1   5.5        1.2    9.6   0.3    3.1  2  ABC_tran         ABC transporter


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.4   3.5     5e-49   2.8e-46      19     363 ..      10     305 ..       2     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 158.4 bits;  conditional E-value: 5e-49
                 .HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH..HHHTSCCCHHHHHC-SEEEEECGGGSB CS
        PIF1  19 nekgklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAalllegGrtahsrfkiplekdeestc..kikrgsklaellkktsliiwDEapmve 115
                  + g+++F+tG++G+gKt+++++ +++lr ++  v+++As+G+A+ ++ +G t+h+  +i+++++ e++   +++ + +  e++k+t+++i+DE++m++
  EGE27292.1  10 LKTGQNVFLTGQAGAGKTYVLNQYIEYLRVRQIPVAVTASTGIASTHM-NGMTVHAWSGIGIQNEFEKVNlqRLAARDEYLERIKNTKVLIIDEISMLH 107
                 589*********************************************.*************9864443335777888999****************** PP

                 HHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSSSS---BGC...CSCHHHH--..EEEE-S-STTTT...........HHHHHHHHH CS
        PIF1 116 recfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekgsraeivaasikeSklWkevk..vlkLtknmRllsesldetekkelkeFskwllk 212
                  +  ++++++l+  +k+   + pFGG++v++ GDf+Q++P+ +kg+ ++   a    S++W e+k  +  Lt+  R++ +       +e + F   l++
  EGE27292.1 108 SKQVDTINQVLKYFRKN---EMPFGGVQVIFSGDFFQLPPIGDKGETSKEKYA--FMSQAWCECKfqICYLTEQHRQTGT-------DEKQRFGLSLND 194
                 ****************8...78***********************98877777..589****98776999********97.......455667666666 PP

                 HHCT---CCCCHH.................HHCHCCS---SS--...........EEEESSCCHHHHHHHHHHCCSSS--EEEE-EEE........... CS
        PIF1 213 igdGkineedeeealieiPedlllkksedkieeivsevygdllqeltdkeyleerailcptnedvdeiNnyvlsklpgeekeylssDsisksseeieel 311
                 i +    ++ +++                   +i+ ++ +++++         +r++l+++n dvd iN++ l++l+++  +y ++             
  EGE27292.1 195 ILNQIRRQSVTQQ-----------------AINILTSTQNHTID--------LNRTRLYTHNADVDVINQTQLNELTAKTITYRAAKM----------- 257
                 6543222333222.................22444555555555........689****************************99876........... PP

                 ESBSSCHHCHHHCCTTSS-SCEEE-TT-EEEE-S--CTT-SC-TCEEEEEEE CS
        PIF1 312 dalypteflnslkanglpnhvLkLkvGvpvmllrNldqsaGLcNGtrlivtq 363
                     ++ +++sl+ +  ++ +L   +G++vm+++Nl    G  NGt + v+ 
  EGE27292.1 258 ---GEKPLQESLSKSVRAPDELTVAIGAKVMFVKNLPLL-GVYNGTMGEVVG 305
                 ...3567999**************************775.*******99986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   1.3e-21   7.2e-19       5     161 ..       2     183 ..       1     213 [. 0.76

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 1.3e-21
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa.......eelgi....eastiakllkrlkgrarlepgtll 92 
                 +Q++a++ +l++g+  ++ltG AG+GKt++l+++ e ++ ++ +v++ A+tg a+  ++        ++gi    e  ++++l  r +  +r+++ ++l
  EGE27292.1   2 KQETALA-ILKTGQ-NVFLTGQAGAGKTYVLNQYIEYLRVRQIPVAVTASTGIASTHMNgmtvhawSGIGIqnefEKVNLQRLAARDEYLERIKNTKVL 98 
                 5777874.666664.79******************************************66555553555444448888888888888778999***** PP

      AAA_30  93 ivDEagmvdtkq...laallkaaeka.....gakvilvGDerQlasVea.Ggvlrdlvea........agigtaeLtevvRqkese 161
                 i+DE++m+ +kq   ++++lk  +k+     g++vi+ GD  Ql++++  G++ ++   a         +++   Lte +Rq+ ++
  EGE27292.1  99 IIDEISMLHSKQvdtINQVLKYFRKNempfgGVQVIFSGDFFQLPPIGDkGETSKEKY-AfmsqawceCKFQICYLTEQHRQTGTD 183
                 ********666611156788888887899988***************98566655432.223334443466777788888886533 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.6   6.6e-21   3.7e-18       2      89 .]     508     603 ..     507     603 .. 0.91

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 6.6e-21
      HTH_40   2 aeetlelleeglsieeIAkerglkesTIegHLaelieegeeidlerlvse.eeekeIeeaiekvgsek.......lkpikealpeevsydeIrlvl 89 
                  ++t+e +++++++eeIA++r+l++sTI++H+a++ +      +e++ ++ e + +I++ +++++ +        +kpi+++l e++sy+eIrl+l
  EGE27292.1 508 IHATYEFIQQKMDLEEIAAKRSLAVSTIINHVASIGKMMGADAIEDYRPTdEVITNIKDKMRHLEAQGefadgfkIKPIYDELREKYSYNEIRLAL 603
                 679*********************************996557789998666************987667899999*******************96 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   5.6e-13   3.1e-10       1     145 [.       3     146 ..       3     147 .. 0.76
   2 ?   -0.2   0.2         2   1.1e+03      37      57 ..     237     257 ..     195     390 .. 0.75
   3 ?   -2.2   0.1       8.4   4.7e+03      68      84 ..     499     518 ..     463     568 .. 0.68

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 5.6e-13
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle....ea 94 
                 q+ a++   + +++++t+ +G GKT+vl++ +++l  ++     ++++ a tg A   ++  +         +H+ + ++++++ + +++l +    + 
  EGE27292.1   3 QETALAiLKTGQNVFLTGQAGAGKTYVLNQYIEYLRVRQ----IPVAVTASTGIASTHMNGMT---------VHAWSGIGIQNEFE-KVNL-QrlaaRD 86 
                 5666665778899********************999888....78************999666.........66666655544442.2222.2233344 PP

      AAA_19  95 eeekklqeeellivDEfqdvdelqyrLlkallgekkk.........lllvGDpdQliyvf 145
                 e  + ++++++li+DE++++   q+  ++++l+   k         +++ GD  Ql++ +
  EGE27292.1  87 EYLERIKNTKVLIIDEISMLHSKQVDTINQVLKYFRKnempfggvqVIFSGDFFQLPPIG 146
                 5566787888***********999988888886553346789999999999999999876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2
      AAA_19  37 lggvkpeeillvaftgrAake 57 
                 +++ +++e+++ + t rAak 
  EGE27292.1 237 INQTQLNELTAKTITYRAAKM 257
                 333445666666666666653 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 8.4
      AAA_19  68 e.....atTiHrlalldfddll 84 
                       ++TiH+    +f +++
  EGE27292.1 499 TlsnglTSTIHAT--YEFIQQK 518
                 0334447788866..4444443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.5e-09   8.4e-07       4     129 ..      12     137 ..       8     141 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.5e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka...erlsseellealeqalraraviellii 97 
                 t + +++tG++G+GKT++l+++ e l         r++++ v +++st   s+ +  + ++a+   +     e  ++++l ++ e +l++ + +++lii
  EGE27292.1  12 TGQNVFLTGQAGAGKTYVLNQYIEYL---------RVRQIPVAVTASTgiASTHMNGMTVHAWSGIGIQnefEKVNLQRLAARDE-YLERIKNTKVLII 100
                 677899********************.........*****999999998877777777777666555553334445555444433.44444446***** PP

      AAA_22  98 DEaqhlrseealeeLrsllnl......srkgvqliLvG 129
                 DE+  l + +++ ++ + l+          gvq+i+ G
  EGE27292.1 101 DEISML-HSKQVDTINQVLKYfrknemPFGGVQVIFSG 137
                 ******.7555555544444333346777778888776 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.8   2.4e-05     0.013       4     183 ..      19     225 ..      16     254 .. 0.72
   2 ?    4.1   0.0      0.06        33     185     227 ..     367     402 ..     331     404 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.4e-05
  Viral_helicase1   4 hGvpGcGKStlirkllrtsliltvnrptaelltegk......................pklpnlsvrtvdsflmalvkstkgkililDEylllh 75 
                       G +G+GK+ ++ + ++  l +++++ ++ + t                         +k++ ++    d++l+  ++    k+li+DE+ +lh
       EGE27292.1  19 TGQAGAGKTYVLNQYIEY-LRVRQIPVAVTASTG-IasthmngmtvhawsgigiqnefEKVNLQRLAARDEYLERIKN---TKVLIIDEISMLH 107
                      689***********9987.444444443333333.246777799999999****999988888888888999998876...69*********** PP

  Viral_helicase1  76 aGyilllaalska..........klvilfGDplQipfhsrnasf..llahlpsslshrvgrrttyllpsdvaeilsakvgteveversgelkve 157
                      + +++ + +  k            +vi  GD +Q p +  +++   +   + s+  +  + +++yl  +++   + +k +    + + + ++++
       EGE27292.1 108 SKQVDTINQVLKYfrknempfggVQVIFSGDFFQLPPIGDKGETskEKYAFMSQAWCECKFQICYLTEQHRQTGTDEK-QRFGLSLNDILNQIR 200
                      *99999554332211111111114699999999999987766541144556677788999999999999999999999.555566666777666 PP

  Viral_helicase1 158 tepkgqekvlvyltftqalkealgvr 183
                       +++ q + + +lt tq+ + +l+++
       EGE27292.1 201 RQSVTQ-QAINILTSTQNHTIDLNRT 225
                      666666.7899999999988888877 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.06
  Viral_helicase1 185 vttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhr 227
                      + tvh  qG t d   + l+k+ ++        + +vAl+R r
       EGE27292.1 367 AITVHKSQGMTLDAAEIDLSKTFEM-------GQGYVALSRLR 402
                      69******************77643.......468*****965 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.3   7.4e-07   0.00042       4      99 ..      15     137 ..      12     138 .. 0.62
   2 ?   -0.2   0.0       1.6   9.2e+02      15      54 ..     415     451 ..     404     469 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7.4e-07
      AAA_14   4 ilvitGaRrvGKTtllkqlikell.............vkkesilyinldderd...........kkladpe.......kllelileklkeekktylflD 71 
                  +++tG   +GKT++l+q+i+ l              + + ++  ++                       e          +++le++  +++++l++D
  EGE27292.1  15 NVFLTGQAGAGKTYVLNQYIEYLRvrqipvavtastgIASTHMNGMT-----VhawsgigiqneF-----EkvnlqrlAARDEYLERI--KNTKVLIID 101
                 6899****************777777777666444443334444444.....1444444433221.....222222223335555554..57999**** PP

      AAA_14  72 Eiqev.....pewekalkslvdeg...knldvivtG 99 
                 Ei+++     +++ ++lk++ +++     ++vi++G
  EGE27292.1 102 EISMLhskqvDTINQVLKYFRKNEmpfGGVQVIFSG 137
                 ***998877789999999999877433335666665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.6
      AAA_14  15 KTtllkqlikellvkkesilyinldderdkkladpeklle 54 
                 K+ ll + +++     ++++++++++ +  +l d++ l +
  EGE27292.1 415 KSLLLDEWVQRID---QRFIELSFEHAKAFELFDESMLAK 451
                 7888888886655...899999999988877776643333 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.9e-07   0.00011       1      91 [.      15     120 ..      15     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.9e-07
                 EEEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--.............--------.........G-SEEEEESGGG--HHHHHH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreik....ngttslvdsplvraar.........egeilvlDEveraesevlns 84 
                 +v+L G+ G gK+ +  ++ + l  ++  + v  + ++ ++++ g +  +    + + ++++  l r a          + ++l++DE+ +++s+ +++
  EGE27292.1  15 NVFLTGQAGAGKTYVLNQYIEYLrvRQIPVAVTASTGIASTHMNGMTVHAwsgiGIQNEFEKVNLQRLAArdeylerikNTKVLIIDEISMLHSKQVDT 113
                 69*********************88888888888888899999988887788886677777777776555689999999****************9999 PP

                 HHHHHHS CS
       AAA_5  85 Llsllee 91 
                  +++l  
  EGE27292.1 114 INQVLKY 120
                 9999975 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   8.1e-07   0.00046      26      54 ..     278     306 ..     260     319 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 8.1e-07
      SH3_13  26 frvgDkVmqlkNnydkgvfNGDiGiikei 54 
                   +g kVm +kN + +gv+NG +G ++ +
  EGE27292.1 278 VAIGAKVMFVKNLPLLGVYNGTMGEVVGF 306
                 6799*********************9876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   8.2e-06    0.0046       1      97 [.      16     125 ..      16     143 .. 0.66
   2 ?   -0.5   0.0       2.7   1.5e+03      83     116 ..     189     221 ..     157     230 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.2e-06
                 EEEESSTTSSHHHHHHHHHHHHTHE.....................EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCC CS
         AAA   1 vllyGppGtGKTllakavakelgve.....................fleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgse 78 
                 v l+G  G GKT++ ++ ++ l v+                     +   sg  + +++ + + +++++  + +++ +++++l+iDEi  l++++    
  EGE27292.1  16 VFLTGQAGAGKTYVLNQYIEYLRVRqipvavtastgiasthmngmtVHAWSGIGIQNEFEKVNLQRLAARDEYLERIKNTKVLIIDEISMLHSKQ---- 110
                 5799*****************954433333333344333333333355566666666677777777776666665555569**********9999.... PP

                 CHHHHHHHHHHHHHHHHTT CS
         AAA  79 seeeervvnqLlteldgvk 97 
                      +++nq l+ + + +
  EGE27292.1 111 ----VDTINQVLKYFRKNE 125
                 ....566666666655555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGST CS
         AAA  83 ervvnqLlteldgvkkkeskvivigatnrpdkld 116
                    +n +l+++ +++  ++  i i+++++ +++d
  EGE27292.1 189 GLSLNDILNQIRRQSVTQQ-AINILTSTQNHTID 221
                 4457889999999999755.88899998888877 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   7.2e-05      0.04       1      33 [.      15      47 ..      15     133 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.2e-05
                EEEEE--TTSSHHHHHHHHHHHH...GGGEEEE CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlellkssgvkvgGf 33
                +vf+TG+ G GKt ++++ +e l+ ++++v+  
  EGE27292.1 15 NVFLTGQAGAGKTYVLNQYIEYLRVRQIPVAVT 47
                69************************9999733 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0033       1.9       4      30 ..       3      29 ..       1      48 [. 0.89
   2 !    8.9   0.1    0.0021       1.2     117     152 ..      89     124 ..      74     136 .. 0.78
   3 ?   -0.7   0.1       1.8     1e+03     136     168 ..     186     215 ..     173     231 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0033
                HHHHHHHHHTTCEEEEEESTTSSHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  4 QaeaiplilgggdvlvaaeTGsGKTla 30
                Q+ a+ ++ +g++v++ ++ G+GKT +
  EGE27292.1  3 QETALAILKTGQNVFLTGQAGAGKTYV 29
                8888888999***************87 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0021
                 SH.CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHH CS
                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 117 ln.lsqvrflVlDEadrlldqgfsdfinrilnqlpqi 152
                 l+ +++ ++l++DE+ +l ++ + d+in++l+ +++ 
  EGE27292.1  89 LErIKNTKVLIIDEISMLHSK-QVDTINQVLKYFRKN 124
                 444899************999.9*******9998654 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.8
                 TTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 136 qgfsdfinrilnqlpqitcdgklqrqvivlSAT 168
                 q f+  +n ilnq+++++ +++    + +l+ T
  EGE27292.1 186 QRFGLSLNDILNQIRRQSVTQQ---AINILTST 215
                 5677778888888865444322...34444444 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.4   8.8e-06    0.0049       3     179 ..      15     188 ..      13     225 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.8e-06
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakke.ekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrl 100
                  v+ tG+aG+GKt+vl++ +  l + ++   av +s       +  + ++ ++ ++  ++++fek++   ++l    + e  ++ ++ +v+i+DE   l
  EGE27292.1  15 NVFLTGQAGAGKTYVLNQYIEYL-RVRQIPVAVTASTG--IASTHMNGMTVHAwSGIGIQNEFEKVNL--QRLA--ARDEYLERIKNTKVLIIDEISML 106
                 6899******************9.33333333333333..3333333333333356677777777663..4444..34566678999999*****9999 PP

     DUF2075 101 ltksdqaekqseenqlkelmkrakvvvalvDeg.Qe..lntgeigteeelkklakkleveleekvhLksqfRvaaseaview 179
                  +k+  + +q  + + k+ m    v v++ ++  Q   +  + + ++e+ + + + + +   + + L++q R+ ++++  ++
  EGE27292.1 107 HSKQVDTINQVLKYFRKNEMPFGGVQVIFSGDFfQLppIGDKGETSKEKYAFMSQAWCECKFQICYLTEQHRQTGTDEKQRF 188
                 9966665555555555555555558888877651442233344444454555555555555555699999999998887777 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00057      0.32      18      65 ..      11      69 ..       4      78 .. 0.80
   2 ?    5.2   0.1     0.019        11     165     209 ..      86     134 ..      71     142 .. 0.81
   3 ?   -0.6   0.1       1.1   6.2e+02      33     117 ..     415     494 ..     415     575 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00057
  KAP_NTPase 18 atpivvgLygkWGsGKssllnkledelkefa...........kpvrflfaefnawsfkg 65
                +t+  v L+g+ G+GK+++ln ++++l+ ++           +++++  ++++aws  g
  EGE27292.1 11 KTGQNVFLTGQAGAGKTYVLNQYIEYLRVRQipvavtastgiASTHMNGMTVHAWSGIG 69
                6777899********************99987777777777766777777777777666 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.019
  KAP_NTPase 165 ektLdalqkrlVvviDdLDrceteevlqlleavkllfsl....kpvvfi 209
                 +++L++ + + V++iD++  +++++v ++ +++k++ +      +v++i
  EGE27292.1  86 DEYLERIKNTKVLIIDEISMLHSKQVDTINQVLKYFRKNempfGGVQVI 134
                 578999999************************9997654444555555 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.1
  KAP_NTPase  33 KssllnkledelkefakpvrflfaefnawsfkggddavaellaaLadaleeeygqlatkllrakklkalkikgkiklrkacaipl 117
                 Ks ll ++ + ++++    ++ f  ++a+   + ++++a++++a ++a++     +   + +++k+ alk +g+++ + +  + +
  EGE27292.1 415 KSLLLDEWVQRIDQR--FIELSFEHAKAFELFD-ESMLAKIYDAFIHACGGTTNPE--VITANQKYRALKKQGVLGQKTKAQNQT 494
                 666777777777777..5666666677777766.7888888888888887766555..444455555555555555333333333 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.6e-05    0.0092       2      93 ..      13     122 ..      12     130 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-05
      AAA_24   2 klkiliyGpsgiGKTtlakel......gpkplfidtekGlksldadkfpdieswedfldevvel.............aaeladyktlviDtideleelc 81 
                 +++++++G++g+GKT++++++       + p+ +    G +s+  + +  +++w  +  + ++               +  ++ k+l+iD i+ l +  
  EGE27292.1  13 GQNVFLTGQAGAGKTYVLNQYieylrvRQIPVAVTASTGIASTHMNGMT-VHAWSGIGIQNEFEkvnlqrlaardeyLERIKNTKVLIIDEISMLHSKQ 110
                 6799*********************999999999999999888888765.7766665555444455888999998884555559*********998877 PP

      AAA_24  82 laevirqnekae 93 
                 ++ + +  + ++
  EGE27292.1 111 VDTINQVLKYFR 122
                 777777666555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   5.3e-05     0.029      29      69 ..       9      48 ..       3      61 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.3e-05
       AAA_7 29 llknkkpvllvGptGtGKtviikdllkkldkekylsltinf 69
                +lk +++v+l+G++G GKt +++++++ l   + +++ ++ 
  EGE27292.1  9 ILKTGQNVFLTGQAGAGKTYVLNQYIEYLR-VRQIPVAVTA 48
                78999*********************9998.4444555544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   7.9e-05     0.044      21      51 ..      12      40 ..       4     125 .. 0.80
   2 ?   -1.5   0.0       5.1   2.9e+03      37      63 ..     415     438 ..     415     531 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.9e-05
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekd 51
                +g  ++v+l+G++G GK+ ++++  ++l+ +
  EGE27292.1 12 TG--QNVFLTGQAGAGKTYVLNQYIEYLRVR 40
                33..79****************999888766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 5.1
      AAA_16  37 Ksslvrellralekdggiflrgkcdql 63 
                 Ks l++e+ +++ ++   f++  +++ 
  EGE27292.1 415 KSLLLDEWVQRIDQR---FIELSFEHA 438
                 788888888888888...666666555 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.6e-05     0.054       2      20 ..     365     383 ..     364     402 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.6e-05
    UvrD_C_2   2 ayaltihkaQGsefpaViv 20 
                 a+a+t+hk+QG   +a  +
  EGE27292.1 365 AWAITVHKSQGMTLDAAEI 383
                 8**********99998777 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   0.00013     0.074       8      35 ..       2      29 ..       1      42 [. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
                HHHHHHHHHHH-SEEEEE--TTSSTTHH CS
        PhoH  8 eQkeylealkkndivfaiGpaGtGKtyl 35
                +Q+++l +lk+ + vf +G+aG+GKty+
  EGE27292.1  2 KQETALAILKTGQNVFLTGQAGAGKTYV 29
                7999***********************7 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00013     0.072       2     111 ..      18     115 ..      17     123 .. 0.81
   2 ?   -2.6   0.1       7.4   4.2e+03      77      83 ..     513     519 ..     468     571 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00013
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyiapdellklkeqadllvvD 97 
                    lt++ G GK+ +l   ++ l  + +  + vta +  + +++  +  ++ + +g+++e +k          + qr+   a de l++ +++++l++D
     EGE27292.1  18 LTGQAGAGKTYVLNQYIEYLRVR-QIPVAVTASTGIASTHMNGMTVHAWSGIGIQNEFEK--V-------NLQRL--AARDEYLERIKNTKVLIID 101
                    89999************999888.579**********99999999999999887743322..2.......23444..5788889999999****** PP

  Helicase_RecD  98 EAAaiplpllkkll 111
                    E ++++ + ++++ 
     EGE27292.1 102 EISMLHSKQVDTIN 115
                    *****999888764 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.4
  Helicase_RecD  77 eyiapde 83 
                    e+i+ + 
     EGE27292.1 513 EFIQQKM 519
                    3333222 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011     0.061      19      43 ..      16      40 ..       9      49 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
  Zeta_toxin 19 illgGqpGAGKselaellkdelerq 43
                ++l Gq GAGK+++++   ++l+ +
  EGE27292.1 16 VFLTGQAGAGKTYVLNQYIEYLRVR 40
                89**************999998644 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0048       2.7      41      63 ..       7      29 ..       2      33 .. 0.87
   2 ?    3.8   0.0     0.076        43     101     124 ..      87     110 ..      48     122 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0048
   IstB_IS21 41 lsfiekkenivllGpsGvGKshl 63
                l+ +++ +n+ l+G++G+GK+++
  EGE27292.1  7 LAILKTGQNVFLTGQAGAGKTYV 29
                5668899**************96 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.076
   IstB_IS21 101 ralkrllkvdllilDdlgllpldq 124
                 + l+r+ ++++li+D++++l+ +q
  EGE27292.1  87 EYLERIKNTKVLIIDEISMLHSKQ 110
                 56889999*********9987665 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   0.00043      0.24      36     146 ..      14     121 ..       8     129 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00043
        TniB  36 pnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkara.rvskleqqvlrllrel.kvrvLiiDEihnll 132
                 +n+ l G+   GKt +++++ +  + ++ + a +    ++++  +    ++  +    +g + + ++ ++++l ++  ++l+++ +++vLiiDEi  l 
  EGE27292.1  14 QNVFLTGQAGAGKTYVLNQYIEYLRVRQIPVAVTASTGIASTHMN----GMTVHAWSGIGIQNEFEKvNLQRLAARD-EYLERIkNTKVLIIDEISMLH 107
                 788999999999999999999877766644444443333333333....4444444444444433331444555554.666666258********9999 PP

        TniB 133 agsarkqreflnal 146
                 + ++++ +++l   
  EGE27292.1 108 SKQVDTINQVLKYF 121
                 77777777776655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00022      0.12      18      47 ..      12      43 ..       2      60 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00022
                HTEEEEEEESTTSSHHHHHHHHHHHTT--..- CS
        TsaE 18 lgdvilLeGdLGaGKTtlvrglakalgve..e 47
                +g+ ++L+G+ GaGKT    + ++ l v+  +
  EGE27292.1 12 TGQNVFLTGQAGAGKTYVLNQYIEYLRVRqiP 43
                2788********************99987342 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.03        17       4      44 ..      18      58 ..      16      76 .. 0.78
   2 ?    5.8   0.0     0.018        10      19     115 ..     192     287 ..     185     305 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.03
         PRK  4 vagsSGaGkttvarklekifgrekvkaaeiegdsflrldra 44
                ++g+ GaGkt v ++  + ++  +++ a+   + + ++   
  EGE27292.1 18 LTGQAGAGKTYVLNQYIEYLRVRQIPVAVTASTGIASTHMN 58
                79*******************99988666655555554444 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.018
         PRK  19 lekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYs.heteeaapdkeeliegadvlvi 115
                 l++i+++   +  +++ +++  l++ ++++   +r r   ++ + +  +  ++++l  +  +++ +k ++kp  +  ++  +apd+  +  ga+v+++
  EGE27292.1 192 LNDILNQIRRQ--SVTQQAINILTSTQNHTIDLNRTRLYTHNADVDVINQTQLNELTAKTITYRAAKMGEKPLQEsLSKSVRAPDELTVAIGAKVMFV 287
                 67788855444..788888888999999999999999999999999**************************97515677788899999999999987 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.58   3.2e+02     478     486 ..     193     201 ..     142     289 .. 0.46
   2 ?   11.0   0.1   0.00015     0.086     568     645 ..     486     562 ..     479     595 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.58
         FPP 478 ekiledirv 486
                 ++il++ir 
  EGE27292.1 193 NDILNQIRR 201
                 222222222 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00015
         FPP 568 ealklqdkssksselsevleqFsavvndllsgkadledfvleLssvldeiselkfslldvssmeeeikksddidkval 645
                 + +k+q++++ +++ls+ l + ++  ++++++k+dle+++++ s +++ i+++  s+ +++   ++i++    d+v  
  EGE27292.1 486 QKTKAQNQTKAGQTLSNGLTSTIHATYEFIQQKMDLEEIAAKRSLAVSTIINHVASIGKMMG-ADAIEDYRPTDEVIT 562
                 45677889999*********************************************988655.566777777777533 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   0.00047      0.26      20     143 ..      13     119 ..       5     126 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00047
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkkgk 118
                  + +f++G  g GKt +l++ ie l+  +   + ++a  ++++++++ +     +       ++++++k++l+       +l  +a +++le ik++  
  EGE27292.1  13 GQNVFLTGQAGAGKTYVLNQYIEYLRVRQ-IPVAVTASTGIASTHMNGM----TVHAWSGIGIQNEFEKVNLQ-------RL--AARDEYLERIKNT-- 95 
                 55689********************7755.5777899999999999998....33333333444444444442.......22..4445666666666.. PP

    ATPase_2 119 kiiiiiDelqklidlglngaellvk 143
                   ++iiDe+ +l + +++  ++++k
  EGE27292.1  96 -KVLIIDEISMLHSKQVDTINQVLK 119
                 .489999999999666665555555 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00069      0.39      20      95 ..      12     120 ..       2     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00069
                      -SS-EEEEEETT--HHHH.HHCC--TTS-EE--SSTTHHH....H-H...........................HHHHHHTTT.SEEEEEE-TT CS
  Sigma54_activ_2  20 sklpvfltGekGsgkelv.ArlLhknsgpwleifvverla....klp...........................ldlleqakg.gtLylkdiad 80 
                         +vfltG++G+gk++v  +++   + +++ ++v ++ +    +++                            + le++k+  +L++ +i  
       EGE27292.1  12 TGQNVFLTGQAGAGKTYVlNQYIEYLRVRQIPVAVTASTGiastHMNgmtvhawsgigiqnefekvnlqrlaarDEYLERIKNtKVLIIDEISM 105
                      5579************985689999999888777776665433344488899999999999999999988888888888886626899999999 PP

                      --HHHHHHHHHHHHH CS
  Sigma54_activ_2  81 lskaeqkeLlellak 95 
                      l +++   + ++l+ 
       EGE27292.1 106 LHSKQVDTINQVLKY 120
                      998888777776654 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00072       0.4       3      95 ..      16     108 ..      14     136 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00072
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.......-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna....rsladllfsqlpepaapvsevwavllelperlLlilDglDelvt 95 
                 v+l+G+aG GKT+ l + ++ ++ ++ p   +  +  + +  ++  +       ++++   ++ ++  a+ +e   +l ++++  +li+D +  l++
  EGE27292.1  16 VFLTGQAGAGKTYVLNQYIEYLRVRQIPVA-VTASTGIASTHMNGMTVHawsgIGIQNEFEKVNLQRLAARDE---YLERIKNTKVLIIDEISMLHS 108
                 89***************9999999998774.344444444444443333555667777777777777777777...666677777777777766666 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0084       4.7      18      40 ..      12      34 ..       9      46 .. 0.90
   2 ?    3.5   0.1      0.07        39      98     143 ..      73     117 ..      58     126 .. 0.73
   3 ?   -2.4   0.1       4.5   2.5e+03      71     120 ..     518     573 ..     507     588 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0084
      ATPase 18 egrvvlitGepGtGKtifalqFl 40
                 g+ v +tG++G+GKt +  q++
  EGE27292.1 12 TGQNVFLTGQAGAGKTYVLNQYI 34
                68999*************99997 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.07
      ATPase  98 ekdkedleelieelaeaikeikakrvviDsitglayeekeavaRei 143
                 e +k +l+ l+++ ++  + ++ k ++iD i+ l ++++ +++ + 
  EGE27292.1  73 EFEKVNLQRLAARDEYLERIKNTKVLIIDEISML-HSKQVDTINQV 117
                 55667777777777777777778***********.77766666554 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.5
      ATPase  71 Gwdlekleeegklaiidasesaeesaee......kdkedleelieelaeaikeika 120
                  +dle++ ++ +la+  + ++ + + +       +d   ++e+i+++++ +++++a
  EGE27292.1 518 KMDLEEIAAKRSLAVSTIINHVASIGKMmgadaiEDYRPTDEVITNIKDKMRHLEA 573
                 57788888877777777766665544445555555555566666666666666655 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.2    0.0052       2.9       2      38 ..       2      37 ..       1     571 [. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0052
                   SHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHH CS
  UvrD-helicase  2 npeqreaiaslggpilveAsAGsGKTfvlaerilrli 38
                   ++e+  ai ++g+++++   AG+GKT+vl + i + +
     EGE27292.1  2 KQETALAILKTGQNVFLTGQAGAGKTYVLNQYIEY-L 37
                   5677889999*******************886654.3 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3    0.0022       1.2       8      31 ..      10      33 ..       7     128 .. 0.81
   2 ?    0.1   0.0       1.9   1.1e+03      51      94 ..     471     521 ..     447     548 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0022
                EETTSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  8 lkegekvaivGenGaGKStLlkll 31
                lk g+ v ++G+ GaGK+ +l+  
  EGE27292.1 10 LKTGQNVFLTGQAGAGKTYVLNQY 33
                789***************999865 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.9
                 GB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
    ABC_tran  51 eqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsklgl 94 
                  +++ ++ k+ gvl q+++ +++++++++       +  +  e + +k++l
  EGE27292.1 471 ANQKYRALKKQGVLGQKTKAQNQTKAGQTlsngltsTIHATYEFIQQKMDL 521
                 444555566677777777777777666666666666333333334444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       970  (0.0541023); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.50
# Mc/sec: 3725.48
//
Query:       EGE27293.1  [L=363]
Description: putative glyceraldehyde-3-phosphate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-51  173.5   0.1    3.6e-51  172.9   0.1    1.3  1  Gp_dh_C     Glyceraldehyde 3-phosphate dehydrogenase, C-termi
    8.6e-28   96.7   0.0    3.5e-27   94.7   0.0    2.1  2  Gp_dh_N     Glyceraldehyde 3-phosphate dehydrogenase, NAD bin
  ------ inclusion threshold ------
      0.091   12.7   0.0       0.28   11.1   0.0    1.8  2  ADH_zinc_N  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9   0.1     6e-55   3.6e-51       1     158 []     187     342 ..     187     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.9 bits;  conditional E-value: 6e-55
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 L+pl+ vl+dkfgi++++mt +ha+t+dQ++lD+++ +d+rrara + niipt++   +a ++Vlp ++gk++g+++rVPt+nv ++dl+v+++k+v+ 
  EGE27293.1 187 LVPLLSVLDDKFGIQSAMMTEIHAVTADQSVLDQAH-RDFRRARASGHNIIPTTSSSINATERVLPLMRGKINGHSIRVPTINVAAIDLTVKFNKTVSL 284
                 79*******************************776.9************************************************************* PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                 +++++al +a++++l gi++y++e+lvssD++g++hs i+d ++ ++  ++l k++awy
  EGE27293.1 285 DQIKDALMTASQNQLLGIMDYCDEPLVSSDFIGNSHSLIIDGQQLMMA-GELAKIYAWY 342
                 *******************************************99988.59*******9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   5.9e-31   3.5e-27       2     100 ..      16     132 ..      15     133 .. 0.79
   2 ?   -2.4   0.0         1   6.2e+03      25      69 ..     282     328 ..     266     338 .. 0.57

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 5.9e-31
                 EEEEESTSHHHHHHHHHHH....HHTTCEEEEEE-TS-HHHHHHHHHEETTTEC-.SS-EEEE.........TTEEEETT....EEEEEE--SSGGGS- CS
     Gp_dh_N   2 kvainGfGRIGrlvlrall....eekelevvaindltdletlayllkyDsvhgrf.kgeveae.........eealvvng....kkikvlaekdpeelp 82 
                 ++ainGfGRIGr+vlra l    +  ++e+vaind++d+++l +llk+Ds+hgrf +g+ +a          ++ l++++    ++i +l+  +p+ lp
  EGE27293.1  16 RLAINGFGRIGRNVLRAYLqqlsTFGHIEIVAINDIADNQMLLHLLKFDSTHGRFdQGDHNAAqvslttnqdNSYLTITKgellHQILLLSCDEPKYLP 114
                 89*****************87744459****************************544444441222233323335555445555************** PP

                 CHHHTSSEEEE-SSS--S CS
     Gp_dh_N  83 wkelgvdlVvestGvftd 100
                 w++l+vd+V+e+tG+f++
  EGE27293.1 115 WADLNVDVVLECTGQFRS 132
                 ****************86 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1
                 CEEEEEE-.TS-HHHHHHHHHEETTTEC-.SS-EEEETTEEEETTEE CS
     Gp_dh_N  25 levvaind.ltdletlayllkyDsvhgrf.kgeveaeeealvvngkk 69 
                 +++ +i+d l+++++ + l   D++   + +++   ++++l+++g++
  EGE27293.1 282 VSLDQIKDaLMTASQNQLLGIMDYCDEPLvSSDFIGNSHSLIIDGQQ 328
                 44445555445555555555555554443244444455566666655 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2   6.9e+03      69      90 ..      27      48 ..      25      65 .. 0.72
   2 ?   11.1   0.0   4.8e-05      0.28      57      95 ..     118     157 ..     109     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
                HHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N 69 gatleaalkllkpgGrlvvvGg 90
                  +l+a+l+ l   G + +v++
  EGE27293.1 27 RNVLRAYLQQLSTFGHIEIVAI 48
                5677888888888888888887 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 4.8e-05
                 SSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEE CS
  ADH_zinc_N  57 egvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgee 95 
                  +vdvv+ec+G+ +++ +a +  + g + v++G+ +++  
  EGE27293.1 118 LNVDVVLECTGQFRSYADANRHRTAGAKQVIIGAaPFDRV 157
                 579******************************9777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2657.22
//
Query:       EGE27294.1  [L=88]
Description: hypothetical protein EA1_03270 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-18   65.5   0.0    3.6e-18   65.3   0.0    1.0  1  Sdh5      Flavinator of succinate dehydrogenase


Domain annotation for each model (and alignments):
>> Sdh5  Flavinator of succinate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0     2e-22   3.6e-18       2      73 .]      10      79 ..       9      79 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 2e-22
                HHHHHHH.--SSHHHHHTTTTHHHHHTTT--HHHHHHHHHHHTS--HHHHHHHHT-.---S-HHHHHHHHHH CS
        Sdh5  2 aRllyrsrrRGmlElDllLgrFaekhlatlseeeldaferLLdleDpdLldwltgrkeepedaelaallekl 73
                +R++y++ rRG++ElD+ +  +++ h+ + +++e++afe+LL +eDpdLl +++g+ e+p+ a  aal++k+
  EGE27294.1 10 RRIIYQA-RRGLKELDFYIDYYVKSHYLSADADEQQAFETLLSYEDPDLLVFFLGQ-ETPSGAGVAALIDKM 79
                8******.************************************************.****99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 698.42
//
Query:       EGE27295.1  [L=138]
Description: hypothetical protein EA1_03275 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.035   13.5   0.1      0.042   13.2   0.1    1.3  1  DUF4191          Domain of unknown function (DUF4191)
      0.054   13.5   0.4      0.089   12.8   0.4    1.3  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
      0.067   13.3   2.3       0.15   12.2   2.3    1.5  1  AA_permease_C    C-terminus of AA_permease


Domain annotation for each model (and alignments):
>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   7.1e-06     0.042      36      73 ..       3      41 ..       1      86 [. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.1e-06
     DUF4191 36 vvvvfvvlglllg.slilllilgillgllvalivltrra 73
                ++v++++++l++g s++ +  lg+++g+l+ ++   +r+
  EGE27295.1  3 TIVLVLLICLAVGlSWWQWASLGVCTGVLIGFYAYHQRS 41
                456666666666647**************9988776664 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   1.5e-05     0.089      50      93 ..       4      48 ..       1      52 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.5e-05
  Phage_holin_3_6 50 alllllvalalala.alwlaalivaavllvlagvlalvglkklkk 93
                      +l+ll++la++l+ ++w++  + ++vl+   +   + g++++++
       EGE27295.1  4 IVLVLLICLAVGLSwWQWASLGVCTGVLIGFYAYHQRSGIRQMSS 48
                     578899999999*96699999999999999999999999999987 PP

>> AA_permease_C  C-terminus of AA_permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.3   2.5e-05      0.15      18      48 ..      10      39 ..       4      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.5e-05
  AA_permease_C 18 iyLmlqLdsltwirfgvwmliglliYflYgi 48
                   i+L + L++++w+  gv++ + + +Y  Y +
     EGE27295.1 10 ICLAVGLSWWQWASLGVCTGVLIGFYA-YHQ 39
                   78999****************999998.655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1194.20
//
Query:       EGE27296.1  [L=236]
Description: hypothetical protein EA1_03280 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-26   92.8   7.8    2.7e-26   92.8   7.8    2.1  2  DUF937           Bacterial protein of unknown function (DUF93
     0.0042   16.9  20.3       0.04   13.8   2.4    2.3  2  Rick_17kDa_Anti  Glycine zipper 2TM domain
  ------ inclusion threshold ------
      0.061   13.3  13.1       0.25   11.4   3.7    2.5  2  Gly-zipper_Omp   Glycine zipper
       0.25   11.6   0.0       0.42   10.9   0.0    1.3  1  Cyclase_polyket  Polyketide synthesis cyclase
       0.71   10.2   9.0        3.8    7.9   0.3    2.5  2  Transgly_assoc   Transglycosylase associated protein


Domain annotation for each model (and alignments):
>> DUF937  Bacterial protein of unknown function (DUF937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   6.7     0.011        38      46      80 ..      29      66 ..       2      70 .. 0.51
   2 !   92.8   7.8   7.4e-30   2.7e-26      15     137 .]      61     210 ..      57     210 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
      DUF937 46 aspgGlgdLlgallggglgg.....ggLgdllsllqnggl 80
                 ++gGlg+Ll++l+gg+ +      ggL  l+s+++ + +
  EGE27296.1 29 PQQGGLGGLLSGLTGGQSNAtsaslGGL--LGSVIGTQMG 66
                4567777777777665555555444555..4455544433 PP

  == domain 2  score: 92.8 bits;  conditional E-value: 7.4e-30
      DUF937  15 laqqlGedeaqaesalsaalpallgalaqnaaspgGlgdLlgallg....gglgg.......................ggLgdllsllqngglgeqaqs 86 
                 ++ q+G++++  +s l+a+l+ llg+ +qn+ s+g+lg++lga+lg    +                           ggL+++ls+++n+gl++++qs
  EGE27296.1  61 IGTQMGKQTQ--GSPLDAVLGGLLGNNQQNT-SAGDLGNVLGAVLGrgnvK---SagmnkstlllallpivltfiqknGGLSGVLSKFSNNGLQNKVQS 153
                 5677888777..59*****************.89***********986653...2444779************************************** PP

      DUF937  87 w.d........gpaiLasllGakqqqvisalsqqtGlsrgevlqlLallaPevmsqLtkq 137
                 w +        +++++a+l+++++   i++++q+tG+sr ev+q++a+l+P+vm+ Lt+q
  EGE27296.1 154 WvNvdtnndgiDADDIARLFDHQD---IENICQKTGASRLEVYQGIAELLPKVMDDLTPQ 210
                 *9567899****************...********************************8 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4  10.2   0.00052       1.9       7      42 .]      32      66 ..      32      66 .. 0.89
   2 !   13.8   2.4   1.1e-05      0.04       7      34 ..      76     103 ..      76     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00052
  Rick_17kDa_Anti  7 AaaGgvaGaaigggggrvlGavvGAaaGavaGnaig 42
                     +++Gg++ ++ gg    +++a +G+++G+v+G+++g
       EGE27296.1 32 GGLGGLLSGLTGG-QSNATSASLGGLLGSVIGTQMG 66
                     6889999999988.888999999***********97 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.1e-05
  Rick_17kDa_Anti   7 AaaGgvaGaaigggggrvlGavvGAaaG 34 
                      A++Gg++G++  +++ + lG v+GA++G
       EGE27296.1  76 AVLGGLLGNNQQNTSAGDLGNVLGAVLG 103
                      89*********999************99 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.7     7e-05      0.25       8      42 ..      33      69 ..      32      73 .. 0.73
   2 ?    6.7   2.2     0.002       7.3       7      35 ..      76     103 ..      71     114 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7e-05
  Gly-zipper_Omp  8 aaGaliGgavggr..gtGaliGAavGaavGgliGaam 42
                     +G+l+ g +gg   +t a  G+ +G ++G + G+++
      EGE27296.1 33 GLGGLLSGLTGGQsnATSASLGGLLGSVIGTQMGKQT 69
                    4677777777743226888889999999999999886 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.002
  Gly-zipper_Omp   7 AaaGaliGgavggrgtGaliGAavGaavG 35 
                     A++G+l+G++  ++ +G   G ++Ga++G
      EGE27296.1  76 AVLGGLLGNNQQNTSAG-DLGNVLGAVLG 103
                     89*******98776443.33555555554 PP

>> Cyclase_polyket  Polyketide synthesis cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.42      13      77 ..     165     230 ..     155     233 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  Cyclase_polyket  13 seeevakifaesDatelPqlvGvrrRslfs.fedlylHlieadeeaeealaearekpefkkvserl 77 
                      +++++a++f ++D  ++ q++G +r ++++ + +l   +++  +++ +  +e + ++e +++ ++l
       EGE27296.1 165 DADDIARLFDHQDIENICQKTGASRLEVYQgIAELLPKVMDDLTPQGDLSKEKEANDEIAELLANL 230
                      689**************************8566777777777777666666666666666666666 PP

>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.3    0.0078        28      10      36 ..      34      62 ..      33      65 .. 0.92
   2 ?    7.9   0.3    0.0011       3.8       8      36 ..      76     103 ..      75     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0078
  Transgly_assoc 10 vGgfllgllgi..gvgggelaslivaiiG 36
                    +Gg+l gl g+  + ++ +l++l+ ++iG
      EGE27296.1 34 LGGLLSGLTGGqsNATSASLGGLLGSVIG 62
                    79*********98888899*********9 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0011
  Transgly_assoc   8 AfvGgfllgllgigvgggelaslivaiiG 36 
                     A++Gg+l+++    +++g+l++++ a++G
      EGE27296.1  76 AVLGGLLGNNQQN-TSAGDLGNVLGAVLG 103
                     7888888888888.9************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2007.07
//
Query:       EGE27297.1  [L=224]
Description: HAD-superfamily subfamily IB hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-34  119.5   0.2    2.9e-34  119.1   0.2    1.1  1  HAD              haloacid dehalogenase-like hydrolase
     0.0021   17.5   0.4      0.032   13.6   0.2    2.4  2  Put_Phosphatase  Putative Phosphatase
     0.0048   16.7   0.3       0.02   14.6   0.0    2.3  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.035   14.4   0.0       0.11   12.8   0.0    1.8  1  Hydrolase        haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.2   6.5e-38   2.9e-34       1     187 [.       5     193 ..       5     194 .. 0.93

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 6.5e-38
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprl..wralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpklldpgalellaa 96 
                 alfD+D TL++ ds++ + ++++++g  +   ++ ++ k+++++   +++ld  +++e+++a+l+  s  +l+ + ++++ ++irp  ++p+a e +a 
  EGE27297.1   5 ALFDLDMTLINVDSDHSWGQYIVKKGLVDPqaYADANDKFYQDY--IAGTLDAVAYNEFVAAFLSTQSmTDLHTYRDEYLKTWIRPN-MRPKAIEQIAY 100
                 79******************999999888644555555566666..7999999**********************************.99********* PP

         HAD  97 hraaGdrvvvvSgglrplvepllaelg..adevlatelevdd.rltgelglegkpvrgegkvaalre.wlaaegegidleevvayGDspsDlpll 187
                 hr +Gd+vvv+S++++++v p+++++    ++ lat+lev+d ++tg+  + +kp +++gk+ +l+      e++gi++++++ay+Ds +D+pll
  EGE27297.1 101 HRTQGDTVVVISATNDFVVVPIAKLFEvdDEHTLATRLEVVDdVYTGK--VADKPNFKDGKLYHLKNlINHFESQGIKFDKLIAYSDSKNDIPLL 193
                 ************************999878889***************..************999997778999*******************98 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2     7e-06     0.032       2     103 ..       4     119 ..       3     133 .. 0.62
   2 ?    0.8   0.0      0.06   2.7e+02     159     182 ..     167     190 ..     158     206 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7e-06
  Put_Phosphatase   2 lvvfDFDktiidedsdnwvvdelpatelfe.elretlrkglwnelmdrvlke..........lheqg.vseadikkvlrsiplspglv.eliks 82 
                      l++fD D t+i++dsd++  + + ++ l + +  +  ++++++++++  l            l +q     +  ++ + +  + p++  ++i++
       EGE27297.1   4 LALFDLDMTLINVDSDHSWGQYIVKKGLVDpQAYADANDKFYQDYIAGTLDAvaynefvaafLSTQSmTDLHTYRDEYLKTWIRPNMRpKAIEQ 97 
                      689*************986666655554331344444455555555444332000011111144444355666777888888999995378999 PP

  Put_Phosphatase  83 lakkkleld.liiiSDaNsffi 103
                      +a ++++ d +++iS +N f +
       EGE27297.1  98 IAYHRTQGDtVVVISATNDFVV 119
                      9988877773667899999987 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.06
  Put_Phosphatase 159 vaeqaregveyerliYvGDganDl 182
                       ++   +g+++++li   D++nD+
       EGE27297.1 167 INHFESQGIKFDKLIAYSDSKNDI 190
                      444456799999**9999**9998 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.21   9.2e+02       3      14 ..       7      18 ..       5      28 .. 0.76
   2 !   14.6   0.0   4.6e-06      0.02     193     228 ..     164     202 ..      52     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.21
                 EEIIIIIS-TTS CS
  Hydrolase_3  3 lDlDGTLlnsdk 14
                 +DlD TL+n d+
   EGE27297.1  7 FDLDMTLINVDS 18
                 9******99554 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.6e-06
                  HHHH...HHCT--GGGEEEEESSGGGHHHHHHSSEEEEE CS
  Hydrolase_3 193 kkla...kelnisleeviafGDgeNDieMLeaaglgvAm 228
                  k+l+   +  +i+ ++ ia  D++NDi++L++a+ ++++
   EGE27297.1 164 KNLInhfESQGIKFDKLIAYSDSKNDIPLLSHADEAICV 202
                  555522255689***********************9998 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.4e-05      0.11      59     210 .]      43     197 ..       2     197 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
                 HHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
   Hydrolase  59 gfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG. 156
                 +f +      y  g  + ++ +    ++ aa  s qs    + +   +++   +i  +   +p+a e +a+ + +g  vv+++  n   +  +a+ +  
  EGE27297.1  43 KFYQ-----DYIAGTLDAVAYN----EFVAAFLSTQSMTDLHTYR--DEYLKTWIRPN--MRPKAIEQIAYHRTQGDTVVVISATNDFVVVPIAKLFEv 128
                 4444.....4444444444444....5555555666666666666..55555666666..999999999999999999999999999999999999998 PP

                 ..GGGESEEEEHHCES.STTT..SHHHHHHHHHHHT..........STGGGEEEEESSHHHHHHHHHTT CS
                 ..xxxxxxxxxxxxxx.xxxx..xxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 157 ..ddyfdaviasdiet.vakp..spegkvaaireLq..........gkpeevamVGDgvnDaaalaaAg 210
                   +++++  +++ +++  +k+  +p+ k  ++  L+          +k  + ++  D+ nD++ l  A+
  EGE27297.1 129 ddEHTLATRLEVVDDVyTGKVadKPNFKDGKLYHLKnlinhfesqgIKFDKLIAYSDSKNDIPLLSHAD 197
                 853444666666666667777776666666666665555666677899999************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 1928.94
//
Query:       EGE27298.1  [L=349]
Description: peptide chain release factor 2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-57  192.3   0.1    3.2e-56  190.3   0.0    1.8  2  PCRF          PCRF domain
    8.7e-43  145.0   0.4    1.5e-42  144.2   0.4    1.3  1  RF-1          RF-1 domain
  ------ inclusion threshold ------
       0.11   12.3   0.1       0.26   11.1   0.1    1.5  1  MIR           MIR domain


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.3   0.0   5.4e-60   3.2e-56       2     193 .]      15     204 ..      14     204 .. 0.97
   2 ?   -0.4   0.1      0.14   8.6e+02      54      80 ..     271     292 ..     242     332 .. 0.54

  Alignments for each domain:
  == domain 1  score: 190.3 bits;  conditional E-value: 5.4e-60
                 HHHHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTT CS
        PCRF   2 eeeleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakell.e.edeelaelaeeeleelekeleeleeelkklLlpkdende 98 
                 +e+lee++ +l++p++w++++ a+k+ske + l+ iv  ++ l+++l+d++++ el+ e +de+l + +++el+++ +++eel  e++++++  +e d+
  EGE27298.1  15 KERLEEVNLELENPDIWNNPDLATKISKEKSVLDGIVGVIDGLSAKLDDAAAMLELAvEdDDESLLSDVQAELDDALNSVEEL--EFRRMFS--GEMDA 109
                 789*************************************************99988645788899999**************..*******..***** PP

                 SEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS.SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF  99 knaileiraGaGGdeaalfaedLlrmYtryaerkgwkvevldaseeeagGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                 +n++l+i++G+GG+ea+++a++LlrmY r++e++g+k evl++se  + Gik++t++++g++a+g+L++E GvHR++R ++++s++ +hTS+a+V
  EGE27298.1 110 NNCYLDIQSGSGGTEAQDWAQMLLRMYLRWCESHGFKAEVLEVSEGGVAGIKSATIMVKGDYAFGWLRTEIGVHRLVRKSPFDSNNGRHTSFAAV 204
                 *********************************************8888********************************************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.14
                 ...HT.......-S-..-GGGTHHHHHHHH CS
        PCRF  54 akelle...edeelaelaeeeleelekele 80 
                 a ++l+    + e++        +  ++ +
  EGE27298.1 271 AMKMLRaklYELEMQ--------KRMEKQQ 292
                 222221111111222........1111111 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.4   2.4e-46   1.5e-42       1     116 []     212     321 ..     212     321 .. 0.95

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 2.4e-46
                 SCCCCE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S-- CS
        RF-1   1 deieieidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgsse 99 
                 d+i+i+i+++dl+idt+rssGaGGQ+VN+t+saVr+th+ptg +vv+cq+eRsq++N+++A+++L+akl  +ele +k+ ek++ ++++k++ig+gs  
  EGE27298.1 212 DNIDIDINPADLRIDTYRSSGAGGQHVNTTDSAVRITHQPTG-VVVACQNERSQHANKDTAMKMLRAKL--YELEMQKRMEKQQALEESKSDIGWGS-- 305
                 5799**************************************.7*************************..777888888888888889999*****.. PP

                 ECEEEECGCTTEEEETT CS
        RF-1 100 kiRtynkkpqsrvkdhr 116
                 +iR+y++ ++sr+kd+r
  EGE27298.1 306 QIRSYVL-DDSRIKDLR 321
                 *******.99*****98 PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   4.4e-05      0.26     122     165 ..     226     269 ..     193     279 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.4e-05
         MIR 122 ekksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfe 165
                 ++  ++g + +++ + ds vr+ H+ tg ++  ++ + +  +++
  EGE27298.1 226 DTYRSSGAGGQHVNTTDSAVRITHQPTGVVVACQNERSQHANKD 269
                 45567899999*********************999987666444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2713.17
//
Query:       EGE27299.1  [L=508]
Description: acetyl-CoA hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-42  144.3   0.3    8.2e-42  142.7   0.0    1.9  2  AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal 
    1.4e-32  113.3   0.0    2.2e-32  112.7   0.0    1.3  1  AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal 
    0.00034   20.1   1.1    0.00055   19.4   0.1    1.8  2  CoA_trans        Coenzyme A transferase


Domain annotation for each model (and alignments):
>> AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.38   2.3e+03      56      85 ..     119     150 ..     112     180 .. 0.63
   2 !  142.7   0.0   1.4e-45   8.2e-42       4     153 ..     326     469 ..     324     470 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.38
                      TTCCTCGGTTHHHH..HHHHHHSTT-EEEEE- CS
  AcetylCoA_hyd_C  56 ggrvvsGvGgqldF..vrgaalskggksiial 85 
                      ++++ +G+ g+ d   v+ aa  ++g+ i+a+
       EGE27299.1 119 EQQMRQGFYGKFDIaiVEAAAITENGELIFAM 150
                      56666666666664225666666777766665 PP

  == domain 2  score: 142.7 bits;  conditional E-value: 1.4e-45
                      HHHHHHTT.-TTEEE-BHHHHT-HHHHTTSTTEEEEEE-SEEETTS-EESSEC.TTCCTCGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEE CS
  AcetylCoA_hyd_C   4 klydflde.npkielrpveyvndpeviaqnkkvvsinsalevdltGqvnsesl.ggrvvsGvGgqldFvrgaalskggksiialpStakkgeiS 95 
                      ++ ++++  ++ki+lrp+e++n+pe+i++   v+ +ns++e d++G++ns+++ g+r+++G+Gg+ dF+r+ +      si + pStak g iS
       EGE27299.1 326 RFNENIEFlKDKIVLRPMEVSNNPEIIRR-LGVIGMNSMIEADIYGNINSTHImGTRMMNGIGGSGDFTRNGFF-----SIYVSPSTAKGGAIS 413
                      566777777899****************9.********************************************.....*************** PP

                      SEESS-STTSSECE-TTT-SEEEETTEEEE-TT--HHHHHHHHHT.TS-HHHHHHHHHH CS
  AcetylCoA_hyd_C  96 rIvpslkegahvtttrhdvdyvvTEyGiadLrgkslreraealik.iAhpdfreeLlee 153
                       Ivp+++   h ++t+hdv ++vTE+G+adLrgks+++ra+ +i+ ++hpd+r++L+++
       EGE27299.1 414 AIVPMVS---HHDHTEHDVMFIVTEQGMADLRGKSPKQRAKVIIDnCSHPDYRDMLRDY 469
                      *******...**********************************99**********986 PP

>> AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.0   3.6e-36   2.2e-32       5     197 ..      11     221 ..       7     222 .. 0.93

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 3.6e-36
  AcetylCoA_hydro   5 yekklkepeeaaelvkngshielsgftavgtakaipkylakrkvekenvkkkllidlavgavlsagPe.eevleekdavlyrpapkqvgellrk 97 
                      +  k+ ++++aa++++ng+++++ gft++g +ka+p+++a ++++ +   +k  + +++ga  s +Pe + vl+e++a+ +r  p+q+   lr 
       EGE27299.1  11 LREKVMSADKAAQFIQNGMMLAITGFTGAGYPKALPTAIANKAKDAHGKGEKFSVGMVTGA--STAPEcDGVLAEAKALHFR-SPFQSDPILRN 101
                      677999**********************************99999999999999*******..666663779**********.*********** PP

  AcetylCoA_hydro  98 ainqglvsfvdkhlsevpqklekgfvp.iDvalieataldedG..ylnlGvg......vrakKviiEv........aelvvivvkk.npPrvng 173
                       in g + + d+hls+v q++ +gf++  D+a++ea+a+ e+G   + +G+g       +a+K iiE         +++++i  ++  pP +++
       EGE27299.1 102 GINAGEIAYQDMHLSHVEQQMRQGFYGkFDIAIVEAAAITENGelIFAMGIGhgveaiKNADKIIIEIndalsvglEGMHDIYDEVgLPPHRKP 195
                      *******************************************988999999**9998899********************976651689**** PP

  AcetylCoA_hydro 174 ydelialdkv..dyivvdpekvvavv 197
                      ++++ a d++    + +dp+kv a+v
       EGE27299.1 196 IPIVGAFDRIgtAGLAIDPDKVLAIV 221
                      **********9999**********97 PP

>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   9.1e-08   0.00055       1      39 [.      15      52 ..      15      67 .. 0.89
   2 ?   -3.3   0.1      0.79   4.7e+03     150     182 ..     131     162 ..     128     168 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 9.1e-08
                CCHHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHH CS
   CoA_trans  1 vetaaeavakeikdGmtvavGGFgligiPealiaalars 39
                v++a++a++ +i++Gm +a+ GF+++g P+al +a+a++
  EGE27299.1 15 VMSADKAAQ-FIQNGMMLAITGFTGAGYPKALPTAIANK 52
                588999998.*******************9999999887 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.79
                 EEEEEECCEEETTCSEESSGGGHTTHSHHHHHH CS
   CoA_trans 150 dvalikaskadeegnlvfeksagnfnkpaiaea 182
                 d+a+++a    e g l f    g++   ai+ a
  EGE27299.1 131 DIAIVEAAAITENGELIFAMGIGHGV-EAIKNA 162
                 78888888888888888877777766.555545 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3942.12
//
Query:       EGE27300.1  [L=48]
Description: hypothetical protein EA1_03300 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 398.33
//
Query:       EGE27301.1  [L=509]
Description: acyl-CoA dehydrogenase-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-18   67.0   0.0    3.6e-18   65.5   0.0    1.9  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    3.1e-18   66.4   0.2    4.6e-17   62.6   0.2    2.2  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    1.5e-14   54.6   0.0    3.1e-14   53.6   0.0    1.6  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    1.3e-10   41.1   0.0    2.8e-10   40.0   0.0    1.6  1  AcylCoA_DH_N   Acyl-CoA dehydrogenase N terminal
  ------ inclusion threshold ------
      0.052   13.8   0.0       0.12   12.7   0.0    1.7  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0     1e-21   3.6e-18       2      96 ..     162     271 ..     161     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1e-21
                    EE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT....-SEEEEEEE..TS---.----EEEEEEE......GG.......GEEE---- CS
  Acyl-CoA_dh_M   2 falTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaai....atlalvlar..tekpd.rarglslflvp....rdap.......gvsvrrie 79 
                    ++lTE  aGsd+  +kt+a+++++g+y+++G+Ki+i+ +++    + +++vlar   +    +++g+slf+vp    +d          vs + ie
     EGE27301.1 162 MCLTESHAGSDLGIIKTRAVPNEDGSYAITGQKIFISAGEHdlteNIIHIVLARlpDA--PaGTKGISLFIVPkfivND-DgsvgernTVSCGSIE 254
                    8****************************************99988899*****5333..357**********776533.257999999******* PP

                    -BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M  80 eklGlrglptgelvfed 96 
                    +k+G++  +t+ + f++
     EGE27301.1 255 HKMGIKASATCVMNFDH 271
                    *************9986 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.2   1.3e-20   4.6e-17       1     145 [.     281     450 ..     281     456 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.3e-20
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTS............B-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH-------- CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrr............kafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd 84 
                    ++G++++ + +n+ Rl++a++ l++ + a++ +l ya++r                  +i h++vr +l + +a  e+ r+lvy + + +d+ ++ 
     EGE27301.1 281 NRGLNAMFTFMNVARLGTAIQGLAASELAFQGSLTYAKERtamralsgvkepNKSADSIIHHPAVRNMLLTQKAFSEGGRALVYYLSYFADTVAKG 376
                    79**************************************444444444333223468****************************9977776666 PP

                    .............HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHH CS
  Acyl-CoA_dh_1  85 .............raeasmaKlfaselaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrnii 145
                                 +  + ++K+f +e+  e a+  +q++Gg+Gy  e+++e+ +rd+r+  ++eGt+ iq +++
     EGE27301.1 377 espsevkfademlSLLTPITKAFLTETGLESANMGVQVYGGHGYISEWGMEQNLRDTRISCLYEGTTKIQALDL 450
                    6679*****************************************************************97655 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   8.5e-18   3.1e-14       4     112 ..      38     156 ..      35     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 8.5e-18
                    HHHHHHHHHHHHHHHTHHHHHHHHHHT.S.......GH...HHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHT CS
  Acyl-CoA_dh_N   4 qealrdtvrefaeeelaphaaewdeeg.e.......fp...relwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhssl 88 
                       + +++++fa+  +ap  +  d eg +       +p   +e++ + +elG+ +i+   e+gG+gl +  +  v e ++ a++++a+++g++++ 
     EGE27301.1  38 INSYLEAAADFAQSVIAPLNRTGDIEGcQfnhgvvtTPtgfKEVYAQYCELGFPAINAEPEFGGLGLPVSLSSAVSEMMGTANWSFAMYPGLSHGA 133
                    5678899***********99999977766666666633445678********************************************99997766 PP

                    THHHHHHHS-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N  89 vapailrfGteeqkrryLpklasg 112
                    + ++i ++Gte qk+ yL k+ +g
     EGE27301.1 134 I-QTIEHHGTEVQKATYLEKMNTG 156
                    6.8*****************9887 PP

>> AcylCoA_DH_N  Acyl-CoA dehydrogenase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   7.8e-14   2.8e-10       1      32 []       2      34 ..       2      34 .. 0.98

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 7.8e-14
  AcylCoA_DH_N  1 qYkAPlRDmrFvLyEvLdaea.laalPgfadad 32
                  qY AP RD++Fv++E+Ld ++ +++l ++a++d
    EGE27301.1  2 QYVAPIRDIQFVMHELLDSQShYSKLSAYAELD 34
                  8******************************97 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.3e-05      0.12      64     132 ..     371     442 ..     299     444 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.3e-05
                    HHHHHHHTT----HHHHHHHHHH...HHHHHHHHHHHHHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG CS
  Acyl-CoA_dh_2  64 raealaaagkevtvedraearra...aalavelaiaavdalfeaaGgsalrkesplqRlwRDahaaaaHaal 132
                    ++ a+ +  +ev+++d   + ++   +a+++e+  + +++ +++ Gg+++ +e  ++  +RD ++ + ++++
     EGE27301.1 371 DTVAKGESPSEVKFADEMLSLLTpitKAFLTETGLESANMGVQVYGGHGYISEWGMEQNLRDTRISCLYEGT 442
                    44555566666655555444444444***************************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3943.52
//
Query:       EGE27302.1  [L=39]
Description: acyl-CoA dehydrogenase-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0002   21.5   0.1    0.00021   21.4   0.1    1.0  1  Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.2e-08   0.00021      93     123 ..       2      32 ..       1      33 [. 0.95

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.2e-08
  Acyl-CoA_dh_C  93 atarfFaervLPraaalaaaieagddslmel 123
                    +ta+f++++++Pr   + a+i +g dslm+ 
     EGE27302.1   2 KTAEFYFAKLMPRHLVHVARINTGFDSLMAT 32 
                    89***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      170  (0.00948185); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 332.75
//
Query:       EGE27303.1  [L=60]
Description: hypothetical protein EA1_03320 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.098   12.0   0.1      0.098   12.0   0.1    1.0  1  Lenti_VIF_2  Bovine Lentivirus VIF protein


Domain annotation for each model (and alignments):
>> Lenti_VIF_2  Bovine Lentivirus VIF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.5e-06     0.098     157     193 ..      12      48 ..       2      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.5e-06
  Lenti_VIF_2 157 ltlvtnanlcwyplgrvtdtsplwlnfssgkeptiqq 193
                  + ++tn+++  yp+ +v  t   wl   + k+p i +
   EGE27303.1  12 MLFATNQSFTLYPILTVGATLTYWLPQVASKNPNILK 48 
                  55689****************************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 473.74
//
Query:       EGE27304.1  [L=46]
Description: hypothetical protein EA1_03330 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 360.79
//
Query:       EGE27305.1  [L=782]
Description: site-specific recombinase-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.5e-228  760.3   1.8   1.9e-228  760.0   1.8    1.0  1  SpecificRecomb  Site-specific recombinase
  ------ inclusion threshold ------
      0.045   13.3   1.6        6.9    6.2   0.1    2.4  2  AAA_25          AAA domain


Domain annotation for each model (and alignments):
>> SpecificRecomb  Site-specific recombinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  760.0   1.8  2.1e-232  1.9e-228       5     641 .]      39     682 ..      36     682 .. 0.98

  Alignments for each domain:
  == domain 1  score: 760.0 bits;  conditional E-value: 2.1e-232
  SpecificRecomb   5 ellielvkwlrpakas.deeeaaerlraLlellernpelrealrellrallseadqlslftdaGllsrsgffselaerleekllPeapdeedlsd 98 
                     e+l++l+++lr ++++ d+e + +++++L+ ll+++pe+ + l++++++l+++++q++l+td+G++s+++f s++++ +++++lP  p+e+++ +
      EGE27305.1  39 EALKRLIDALRVTDEDeDNEIVDAKFDELIALLREHPEYGSGLAAFILRLINKYRQITLYTDTGIASDQSFSSSVSRLISHRFLPLLPEEDSVVE 133
                     7899********9999455569************************************************************************* PP

  SpecificRecomb  99 llsllfpkeeDaewlealddetlarLlelleeeeeeeeeaaeklreellealevlsvqiaalglepelrrrlpeleeeespFlalqreleallea 193
                     l ++lf++++D++w+e+++de++++L+ l+ + +e++ + ++++++++l+a+ vls++i+++gl+pel++ +pel +++++F+a+++e+  ++++
      EGE27305.1 134 LANYLFDRNNDWKWVESISDERWDALVPLI-RPDEQDLSLVAQAKNSILNAIVVLSYRISGIGLHPELMNFYPELLNYSAAFVAQNQEAVLFVNQ 227
                     ******************************.99999*********************************************************** PP

  SpecificRecomb 194 yea......aledeeeaeedlkhlrvlldqcreavdrvrkhleenGvsvslvfllerlrqrleRleeLldllleeeeeeraralveLlkelveae 282
                     y++      +++   +++ d + l v+++qc+++vd++rk+++++G+s++l+ +l rl+q+l+R+++L++l++ ++e++r++a+++L+ e+v+++
      EGE27305.1 228 YRQaheldlMTDVIPDQDIDPAPLMVMVEQCEDIVDTLRKRVYKTGISIRLTNMLARLEQSLQRMRTLVELVS-DAEHKRDQAIADLTIEVVQTA 321
                     ***888887777788899999***************************************************7.99******************* PP

  SpecificRecomb 283 aekrsvrellrenielLarkvveraaetGehYItrdrkeYlkmlrsAaggGliialtallKillaklhlapfvegllaslnYalsFvlihllhft 377
                     ++++s+++l+++n++lL+rkv+e+a+++GehYI++dr++Y+km+++Aa+gGl+i+++a+lK+l +++ lap+ +++++s++Y+l+Fv+ih+++ t
      EGE27305.1 322 KTRYSFSSLIESNTRLLSRKVTENAGRVGEHYISTDRTGYRKMYKKAAIGGLFIGFMATLKMLSYHVVLAPIGRAFVNSMIYGLGFVFIHIAKGT 416
                     *********************************************************************************************** PP

  SpecificRecomb 378 vATKQPAmTAaalAaklddek..ksaeleklvelvvallRsqlaAvlGNvlvvipvalliallilallgapliseekaeallesldplgslally 470
                     vATKQPAmTAaa+A+++++++  k+++l+kl+elvv++lR+q++A+lGN++v++pvallial++ +++++p+i+ ++a++ll++ldp++slal +
      EGE27305.1 417 VATKQPAMTAAAIASTISGSSgkKTQQLAKLAELVVDILRTQFIAILGNISVAMPVALLIALAWGYFYDTPMIDGAQAAHLLHDLDPIRSLALPH 511
                     ******************7666799********************************************************************** PP

  SpecificRecomb 471 AaitGvlLFlssLiaGyadNlavynriderlaenrrlrrllgeeraerlAdyveknlgalagNislGllLGltpaigkllglpldiRHvtlssgn 565
                     Aai+Gv+LF+s+L+aGy+dNla+yn+i+er++++ +l r+++++++++++++ve+nlga++gN+++G++LG+t+++g++lglpldiRH++++s+n
      EGE27305.1 512 AAIAGVFLFVSGLVAGYYDNLAAYNKIGERIRKHWVLMRVMPKRWLDKMSSFVEANLGAIMGNFIFGCFLGSTATVGYMLGLPLDIRHIAFASAN 606
                     *********************************************************************************************** PP

  SpecificRecomb 566 lgaalvalglealklqalllavagvlligllNllVSFalAllvAlrsrkvrfkerrrllkavlrrllkrplsfllP 641
                     + ++l+ l+ e+l++q ++l+++g+llig++NllVSF+lAl+vAlrs++v+f+e+++l+k v++++++rpl+f++P
      EGE27305.1 607 FVHGLYYLSPEHLTWQVAILSFVGMLLIGMMNLLVSFSLALMVALRSKEVKFTEWKQLYKLVTNHFITRPLDFVWP 682
                     ***************************************************************************9 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1   0.00099       8.8      76     142 ..      12      76 ..       7      79 .. 0.73
   2 ?    6.2   0.1   0.00077       6.9      67     138 ..     246     318 ..     234     325 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00099
      AAA_25  76 yvsaEdsedelrrRlravg..ealrddarllvldlagveslpLfakdrggtlltadvdaleaaieeveg 142
                 ++++E++ ++l++ l+++   ++l++++ l    l   + l+++++d ++++++a++d+l+a ++e+++
  EGE27305.1  12 FIVLENDMSNLEQILQRIVvlQELPEPEAL--KRLI--DALRVTDEDEDNEIVDAKFDELIALLREHPE 76 
                 566777777788888886622555555555..4433..459999*********************9876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00077
      AAA_25  67 vapeqgkVlyvsaEdsedelrrRlravgealrddarllvld..lagv.eslpLfakdrggtlltadvdaleaaie 138
                 + p +  V++ ++Ed  d+lr+R++++g  +r+   l+ l   l+++ + + L++  + ++++++++++l  ++ 
  EGE27305.1 246 IDPAPLMVMVEQCEDIVDTLRKRVYKTGISIRLTNMLARLEqsLQRMrTLVELVS--DAEHKRDQAIADLTIEVV 318
                 4578899*********************999777777666522444433344443..333346777777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 5292.62
//
Query:       EGE27306.1  [L=57]
Description: hypothetical protein EA1_03340 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       187  (0.01043); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 440.66
//
Query:       EGE27307.1  [L=626]
Description: RNA polymerase sigma factor 70 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-53  182.3   0.8      1e-53  182.3   0.8    3.1  3  Sigma70_ner   Sigma-70, non-essential region
    8.8e-31  105.8   0.9    8.8e-31  105.8   0.9    3.5  4  Sigma70_r3    Sigma-70 region 3
    3.3e-25   88.0   2.2    3.3e-25   88.0   2.2    3.0  3  Sigma70_r1_1  Sigma-70 factor, region 1.1
    5.6e-22   77.3   0.3    1.9e-21   75.6   0.3    2.0  1  Sigma70_r2    Sigma-70 region 2
    1.7e-19   69.0   2.0    3.6e-18   64.8   0.4    2.9  2  Sigma70_r4    Sigma-70, region 4
    4.7e-12   45.7   0.3    4.7e-12   45.7   0.3    3.0  3  Sigma70_r1_2  Sigma-70 factor, region 1.2


Domain annotation for each model (and alignments):
>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.2      0.62   1.9e+03      18      53 ..      46      88 ..      32     114 .. 0.60
   2 !  182.3   0.8   3.4e-57     1e-53       1     202 [.     147     358 ..     147     360 .. 0.91
   3 ?    0.9   1.3      0.12   3.6e+02      13      96 ..     497     590 ..     494     619 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.62
  Sigma70_ner 18 geirLrdiidGflD......eeeeeeeeeeeedeeeeeee.ed 53
                 +  +++dii+ ++D      e ++++++   +d+ ++++   d
   EGE27307.1 46 ESDQIEDIIQMLTDvgiqvfEVAPDDDDILLSDTGSDDDIaTD 88
                 5668899999888888877733444443333333333332211 PP

  == domain 2  score: 182.3 bits;  conditional E-value: 3.4e-57
  Sigma70_ner   1 yPetiaellelydrveageirLrdiidGflD.........eeeeeeeeeeeedeeeeeee.edddeeeseseaadeeelkeealekfeelreqyeklr 88 
                  +P+t++ +l++y++v  ge +++di++Gfl+         eee e +  + ++++++++e + + ++++ ++++d++ ++ee++ +fee++ +y+ ++
   EGE27307.1 147 WPGTVKFVLDEYQQVLLGEKKISDIVSGFLNgddgdfilnEEEIELDLGSPKTTDKDDAEeDGESDGTELDDTDDSSLDPEEVRVRFEEIQRLYDVAQ 244
                  8************************************9974334444444444444444324444899****************************** PP

  Sigma70_ner  89 kalkkkgrkskkyekareelseefkefrLtpkqidrLveqlrslvervraqEreimrlcverakmprkdFiksFpgnetdlewlekllaagkpwsekl 186
                  +al+k+gr s++++ a++el+++f+ ++L+++  d+ +  +r+++e+vr++Er+im+l++++ kmp ++F k+Fp+net+lewl + ++ g +++e+l
   EGE27307.1 245 EALAKHGRGSEAVKVAYDELANHFMLIKLNNRLSDQVMSLMREVYEDVRSNERRIMKLVIRHGKMPMDEFKKTFPSNETNLEWLSHRIKGGPAFAETL 342
                  ************************************************************************************************** PP

  Sigma70_ner 187 eeveeeiqelqqklae 202
                  ++ e+e+ +lqqkl +
   EGE27307.1 343 AKIEPEVVALQQKLLA 358
                  *************986 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.12
  Sigma70_ner  13 drveageirLrdiidGflDeeeeeeeeeeeedeeeeeee.....edddeeeseseaadeeelkeealekfeelreqyeklrk...........alkkk 94 
                  +r+  +e ++r +++  + +e    e    +de++         ed+   +s  e+a  e l+e ++e +++l e   k+ k           +l++ 
   EGE27307.1 497 ERLDMDEAKVRKVLK--IAKEPISMETPIGDDEDS---HlgdfiEDNT-ISSPIENATAEGLREATREVLDNLTEREAKVLKmrfgidmpsdhTLEEV 588
                  677777777777777..442222222222222222...2344744444.5677888888888999999999998888888776666666555544444 PP

  Sigma70_ner  95 gr 96 
                  g+
   EGE27307.1 589 GK 590
                  44 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.9         6   1.8e+04      56      75 ..      70      89 ..      68      91 .. 0.75
   2 ?   -5.2   3.7         6   1.8e+04      54      76 ..     208     228 ..     204     229 .. 0.63
   3 !  105.8   0.9   2.9e-34   8.8e-31       1      77 [.     470     546 ..     470     547 .. 0.98
   4 ?    0.2   0.0      0.27     8e+02      22      40 ..     584     602 ..     582     610 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 6
                SSTTXBSTTTXBXSSSXXHH CS
  Sigma70_r3 56 eeedtelgdlleddeaespe 75
                +++d  l+d+  dd++++ e
  EGE27307.1 70 DDDDILLSDTGSDDDIATDE 89
                57788888988888887765 PP

  == domain 2  score: -5.2 bits;  conditional E-value: 6
                 SSSSTTXBSTTTXBXSSSXXHHH CS
  Sigma70_r3  54 vgeeedtelgdlleddeaespee 76 
                 +ge++ tel d  +dd+  +pee
  EGE27307.1 208 DGESDGTELDD--TDDSSLDPEE 228
                 45566666666..5555888886 PP

  == domain 3  score: 105.8 bits;  conditional E-value: 2.9e-34
                 XHHHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTXBSTTTXBXSSSXXHHHC CS
  Sigma70_r3   1 EklnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedtelgdlleddeaespeea 77 
                 E++nki+r++r+L qe+grePtpeE+ e+L+++e+kVr+vl++a+ep+S+++p+g++ed++lgd++ed  ++sp e+
  EGE27307.1 470 ETINKINRVSRQLLQEMGREPTPEELGERLDMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTISSPIEN 546
                 89***********************************************************************9875 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.27
                 XHHHHHHHHTXXHHHHHHH CS
  Sigma70_r3  22 tpeEiAeeLglseekVrev 40 
                 t eE+ ++ +++ e++r++
  EGE27307.1 584 TLEEVGKQFDVTRERIRQI 602
                 679**************98 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   2.2   1.1e-28   3.3e-25       3      79 ..      14      90 ..      12      93 .. 0.89
   2 ?   -3.5   3.1       3.7   1.1e+04      58      63 ..     203     208 ..     182     227 .. 0.50
   3 ?   -1.1   0.0      0.68     2e+03      18      44 ..     257     283 ..     245     292 .. 0.70

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1.1e-28
                  HHHHHHHHHHHHHHHSCEEHHHHHHHGCCSS--HHHHHHHHHHHHCCT-EEE-SS-.........S-SSSXXXXXXX CS
  Sigma70_r1_1  3 qkaavkeLikkgKkkGyLtyeEindaLpddeldseqiediiemLedmgIdvveeaededellleeeaedaeeedeea 79
                  +++++ +Li +gK++GyLty+E+nd Lp+++ +s+qiedii+mL d gI+v+e a+d+d++ll+++ +d++   +ea
    EGE27307.1 14 SSSQLGALIRLGKEQGYLTYAEVNDQLPESVTESDQIEDIIQMLTDVGIQVFEVAPDDDDILLSDTGSDDDIATDEA 90
                  6799********************************************************99777777666665554 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.7
                   -..... CS
  Sigma70_r1_1  58 ededel 63 
                   +d++e 
    EGE27307.1 203 DDAEED 208
                   111221 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.68
                   SCEEHHHHHHHGCCSS--HHHHHHHHH CS
  Sigma70_r1_1  18 GyLtyeEindaLpddeldseqiediie 44 
                     + y+E+++++    l+    +++++
    EGE27307.1 257 VKVAYDELANHFMLIKLNNRLSDQVMS 283
                   45899****999666666655555555 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.3   6.3e-25   1.9e-21       1      70 [.     391     460 ..     391     461 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 6.3e-25
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 +ve++l+lv ++a++++++g+++ Dl+Qe++++l++av++f+  rg++fs+++++++r+a+ + + +++r
  EGE27307.1 391 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 460
                 689**************************************************************99998 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.035   1.1e+02      19      42 ..     488     511 ..     478     515 .. 0.81
   2 !   64.8   0.4   1.2e-21   3.6e-18       1      50 []     559     612 ..     559     612 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.035
                 TT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4  19 eglTleEIgerlgiSrerVrqiek 42 
                 ++ T eE+gerl++ +  Vr  +k
  EGE27307.1 488 REPTPEELGERLDMDEAKVRKVLK 511
                 555889********9999998776 PP

  == domain 2  score: 64.8 bits;  conditional E-value: 1.2e-21
                 HHHHS-HHHHHHHHHHH....TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf....geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +L+ L+ere +vl++rf      ++TleE+g++++++rer+rqie++AlrkLR+
  EGE27307.1 559 VLDNLTEREAKVLKMRFgidmPSDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 612
                 599***************999999*****************************7 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.3   1.6e-15   4.7e-12       1      31 [.     106     136 ..     106     139 .. 0.97
   2 ?   -2.4   1.2       1.7   5.1e+03      19      24 ..     187     192 ..     186     192 .. 0.92
   3 ?   -0.0   0.0      0.31   9.4e+02       5      14 ..     481     490 ..     480     491 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.6e-15
                   HHHHHHHHHHHHSX--THHHHHHHHHHHHCC CS
  Sigma70_r1_2   1 DpvrlYLrEIGriPLLtaeEEveLAkrieaG 31 
                   Dpvr+Y+rE+G ++LLt+e E+ +Akrie+G
    EGE27307.1 106 DPVRMYMREMGTVDLLTREGEIGIAKRIEEG 136
                   9*****************************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
                   HHHHHH CS
  Sigma70_r1_2  19 eEEveL 24 
                   eEE+eL
    EGE27307.1 187 EEEIEL 192
                   9****9 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.31
                   HHHHHHHHSX CS
  Sigma70_r1_2   5 lYLrEIGriP 14 
                   + L+E+Gr P
    EGE27307.1 481 QLLQEMGREP 490
                   569*****88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4202.04
//
Query:       EGE27308.1  [L=137]
Description: hypothetical protein EA1_03350 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-05   24.9   7.6    2.4e-05   24.2   7.6    1.3  1  LrgA      LrgA family
     0.0073   16.5   4.1     0.0073   16.5   4.1    1.7  2  DUF2304   Uncharacterized conserved protein (DUF2304)


Domain annotation for each model (and alignments):
>> LrgA  LrgA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   7.6   2.7e-09   2.4e-05       6      91 ..      30     118 ..      26     121 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.7e-09
        LrgA   6 llsrllplpiPgsviGlllLlllLl...tkivklekveeaadfllkhlallFvPagvgvmeyldllkaellailvalvvstllvlvvtg 91 
                 ++ ++l++p  ++++Gl+ L+++L+   + +   +++++ a++ll    + F+P+  g    l  l ++ll++ +++++stl+ l++ +
  EGE27308.1  30 VVCTWLGIPTAANIVGLVSLFIVLVgvrMSVGLPAWLSSSASTLLVDSGFAFLPVSAGAGILLFGLGEDLLSVSATIIISTLIPLWAFA 118
                 567899*******************9997788899************************999999******************998876 PP

>> DUF2304  Uncharacterized conserved protein (DUF2304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   4.1   8.1e-07    0.0073      26      77 ..       3      54 ..       1      61 [. 0.93
   2 ?   -1.6   0.2      0.35   3.2e+03      37      37 ..     102     102 ..      63     123 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.1e-07
     DUF2304 26 lkleysllwlllalilivlslfpqiltvlanllGvgrgtnllfllgivfllv 77
                lkl ++ +wl++++ +++++ f++++ v+ ++lG+ +++n++ l++++++lv
  EGE27308.1  3 LKLGNKRFWLAMIATAAIVVGFRELALVVCTWLGIPTAANIVGLVSLFIVLV 54
                6778888***************************************999987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.35
     DUF2304  37 l 37 
                 +
  EGE27308.1 102 V 102
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1065.32
//
Query:       EGE27309.1  [L=230]
Description: lrgB-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-45  154.7  17.6    2.9e-45  154.4  17.6    1.1  1  LrgB       LrgB-like family
  ------ inclusion threshold ------
      0.021   14.8   1.5      0.021   14.8   1.5    2.1  2  Claudin_3  Tight junction protein, Claudin-like


Domain annotation for each model (and alignments):
>> LrgB  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4  17.6   3.2e-49   2.9e-45       1     212 [.      14     225 ..      14     227 .. 0.92

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 3.2e-49
        LrgB   1 TllaYllakalykkl.k.kpllnPvlvaivliillllllgisyetYke.gakllsllLgpatVaLAvpL....Ykqrellkknllaillgllvgslvsl 92 
                 Tl+a++ ak++ + l k ++ + +++vai+l+ +ll+++g++y+tY++ ++ +++ lLg++tV LAvpL    +k +++     +++ ++++++s+v++
  EGE27309.1  14 TLIAHIGAKYVLRYLnKfIKGVPMIIVAIILTPILLFVIGLDYHTYYAhARPVFDRLLGYSTVLLAVPLagmdFKGLPV-----KKLGVVVILASIVGA 107
                 8999999999998884224668999*********************9945668899*************7666666665.....99************* PP

        LrgB  93 lsavllakllglseelllsllpkSvTtpiAmevseelgGipsltavlviltGilGallgelllkllrikdpvarGlalGtashaiGtakalelgeeaga 191
                 ++ + l++ll+l+ +++l+++++SvTtp++++v++ +++   ++ +++i++GilGa ++++l+k +  +d++a+GlalG+++haiGt++a+ ++++ag 
  EGE27309.1 108 ILPMSLGYLLTLNMDTILAFATRSVTTPVGLSVAQIIDAPLVMANLIIIVSGILGAGVCRILFKNI--QDERAQGLALGLVAHAIGTVEAWMISPTAGR 204
                 ****************************************************************85..5****************************** PP

        LrgB 192 fsslamvlaGiltallaplll 212
                 +++++++++G++ta+++p+++
  EGE27309.1 205 YAAFGLAINGLVTAMWLPVAV 225
                 ******************976 PP

>> Claudin_3  Tight junction protein, Claudin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   1.5   2.4e-06     0.021      70     139 ..       5      77 ..       1      84 [. 0.79
   2 ?   -2.6   0.1      0.53   4.8e+03       8      18 ..      95     105 ..      88     124 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-06
   Claudin_3  70 viliyivivrkvkkngysksvrklffliallslliviltviaviliavnvskfndsfndss....lqLGYsawl 139
                 + + +++i++ + + g+   +r+l ++i+++ ++iv+++++ + l+ + ++ +   + +      + LGYs+ l
  EGE27309.1   5 TTILIAFIITLIAHIGAKYVLRYLNKFIKGVPMIIVAIILTPILLFVIGLD-YHTYYAHARpvfdRLLGYSTVL 77 
                 56777888999999999999**********999999888888888888777.44444444467789*****985 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.53
   Claudin_3   8 lgvlvvisfil 18 
                 lgv+v+++ i+
  EGE27309.1  95 LGVVVILASIV 105
                 45554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1850.79
//
Query:       EGE27310.1  [L=303]
Description: putative lytic transglycosylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-29  102.5   0.0    2.6e-29  101.3   0.0    1.7  1  SLT       Transglycosylase SLT domain
    0.00024   20.4   1.3       0.13   11.4   0.4    2.3  2  SLT_2     Transglycosylase SLT domain


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   2.9e-33   2.6e-29       2     116 ..     122     229 ..     121     230 .. 0.95

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 2.9e-33
                 HHHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHH CS
         SLT   2 liikaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyngslllalaAYNaGegt 100
                 li++ + + gv+p l++a++ +ES+fnp++ s+ ga+GLmQ+mp ta++      ++++++ dP++ni+ g+kyL+ l  q+  + + ++aAYNaG+g+
  EGE27310.1 122 LIRESAARHGVDPALIKAVIHTESSFNPNVRSRMGAMGLMQLMPGTARD------MGVYNAWDPAQNIEGGTKYLAYLQHQFS-NPNHVIAAYNAGPGN 213
                 6889999******************************************......468*************************.*************** PP

                 HHHTTHSSHHHHHHHH CS
         SLT 101 vkkakkevkkkekkkl 116
                 vkk+ +    +e+k++
  EGE27310.1 214 VKKYGGIPPFRETKNY 229
                 ***9998888888775 PP

>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00017       1.5      51     101 ..      95     147 ..      42     154 .. 0.68
   2 !   11.4   0.4   1.5e-05      0.13     151     176 ..     153     178 ..     150     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00017
       SLT_2  51 eeYlkrfvtekriakG..raflkehaallariekeyGVpaeiivAiwgvEtry 101
                 +++ ++fv ++  +     +  +++ +l+++  ++ GV++++i A++  E+++
  EGE27310.1  95 TNFSANFVANSYASYSgdYSERSTYDHLIRESAARHGVDPALIKAVIHTESSF 147
                 44444444444333330023345788999999*******************99 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 1.5e-05
       SLT_2 151 SwaGamGltQFmPssylkyAvDfdgd 176
                 S +GamGl+Q mP ++++++v    d
  EGE27310.1 153 SRMGAMGLMQLMPGTARDMGVYNAWD 178
                 779***************99965555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2286.95
//
Query:       EGE27311.1  [L=301]
Description: HtpX-like protease [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-39  133.7   0.1    1.1e-38  133.0   0.1    1.3  1  Peptidase_M48    Peptidase family M48
    0.00058   19.1   0.0     0.0015   17.8   0.0    1.7  2  Peptidase_M56    BlaR1 peptidase M56
  ------ inclusion threshold ------
      0.062   13.4   1.0        0.2   11.7   0.7    2.0  1  Ldr_toxin        Toxin Ldr, type I toxin-antitoxin system
      0.088   12.5   1.0       0.11   12.3   0.1    1.5  2  DUF5083          Domain of unknown function (DUF5083)
       0.12   12.2   0.0       0.18   11.7   0.0    1.3  1  SprT-like        SprT-like family
       0.14   12.0   0.6       0.29   11.0   0.1    1.7  2  Myc_target_1     Myc target protein 1
        8.6    6.6   9.9         11    6.2   1.8    2.3  2  RDD              RDD family


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.1   4.3e-42   1.1e-38       3     194 ..      84     298 ..      82     300 .. 0.91

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 4.3e-42
                    -SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-E.EEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHH.HHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Peptidase_M48   3 reaelkevveelakeaglpkpltkvyvvnspkrNAFalgggknk.rivltdgLlkqllseeelaaVlGHElGHikhrhsvvs.livsllasillll 96 
                    +e++l ++v + a+e+g+   +++v ++++ + NAFa+g++knk  +++++gL+  +++++e++aVl+HE+GH++++++v+  li+++++ +++++
     EGE27311.1  84 TEQWLVDMVARQAREVGI--GMPEVGIFDNAQPNAFATGWNKNKaLVAVSTGLI-HTMTPDEVEAVLAHEIGHVANGDMVTLaLIQGVVNAFVMFF 176
                    5899**************..999*******************************.*************************9978888888888888 PP

                    HHHHHTT-SHHHHHTT--S---HHHHHHHHHHTT...........HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHH..... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
  Peptidase_M48  97 glallisraeedaagafldalavliglliillfl...........alSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrs..... 176
                    +++ ++++ +++  ++  ++ ++++++ ++++ +           ++SR rEy+ADe+g++l+  ++++++al  l    +r d+  ++ +     
     EGE27311.1 177 ARI-IGNFVDRAIFKNESSSPGIAYFVTSMVMDIllgilasaivmWFSRLREYRADEMGARLAG-RDKMISALNALRPAEARPDQMPEAMKafaia 270
                    885.7778888877778788888888888888889999**************************.***********99999977777777678899 PP

                    ..........HHS-SS--HHHHHHHHHH CS
                    ..........xxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 177 ..........ellstHPplleRiqalke 194
                               l+++HP l +Ri++l++
     EGE27311.1 271 sgqsqgfsiaSLFRSHPTLDDRIASLQK 298
                    99999999*****************987 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.9e-07    0.0015     180     221 ..     127     168 ..     113     182 .. 0.85
   2 ?   -3.6   0.0         2   5.1e+03     117     142 ..     210     232 ..     197     239 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.9e-07
  Peptidase_M56 180 rIvlPadflkklsdeeleyillHElaHlkrkDllvnllvavl 221
                     + +++ + ++++ +e e +l+HE  H++++D++  +l++ +
     EGE27311.1 127 LVAVSTGLIHTMTPDEVEAVLAHEIGHVANGDMVTLALIQGV 168
                    5667888899*************************9999764 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2
  Peptidase_M56 117 llyliaallvlkkrfvrklgklraee 142
                    ll ++a++ v++   +++l+++ra+e
     EGE27311.1 210 LLGILASAIVMW---FSRLREYRADE 232
                    344455555555...45555555555 PP

>> Ldr_toxin  Toxin Ldr, type I toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   7.8e-05       0.2      18      32 ..     209     223 ..     205     226 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.8e-05
                 HHHHHHHHHHHHHHH CS
   Ldr_toxin  18 vlAGIlaaaIVnWlr 32 
                 +l GIla+aIV W+ 
  EGE27311.1 209 ILLGILASAIVMWFS 223
                 899**********85 PP

>> DUF5083  Domain of unknown function (DUF5083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       3.2   8.1e+03      94     104 ..      14      24 ..       7      36 .. 0.61
   2 ?   12.3   0.1   4.1e-05      0.11      21     100 ..     170     249 ..     154     253 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.2
     DUF5083  94 vtkvlsilymi 104
                 v  v+si++m+
  EGE27311.1  14 VLIVFSIVFMV 24 
                 34444555544 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.1e-05
     DUF5083  21 mtvllafapllaellnnrlqygrdfsdkvalysyisimvvyvitilleiifyfkllknyqydqsnvelanrvkvtkvlsi 100
                    ++ fa ++ ++++  +      s  +a++    +m +    +   i+++f  l++y+ d+    la r k+   l  
  EGE27311.1 170 NAFVMFFARIIGNFVDRAIFKNESSSPGIAYFVTSMVMDILLGILASAIVMWFSRLREYRADEMGARLAGRDKMISALNA 249
                 34456678888888887777777777788877776677666655666899*********************999887765 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     7e-05      0.18      44      77 ..     123     156 ..      65     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
   SprT-like  44 rhhasIeLseklldsrsedrllntLaHElcHlal 77 
                 +++a +  s+ l+ + + d+++ +LaHE+ H+a+
  EGE27311.1 123 KNKALVAVSTGLIHTMTPDEVEAVLAHEIGHVAN 156
                 47789999999*********************98 PP

>> Myc_target_1  Myc target protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.5   3.7e+03      34      59 ..      54      80 ..      42      87 .. 0.62
   2 ?   11.0   0.1   0.00011      0.29      22      51 ..     198     227 ..     185     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.5
  Myc_target_1 34 llgaliyvllt.wlsrrrasaritrrs 59
                  ++g++i ++l  w+ ++ +   ++ ++
    EGE27311.1 54 MIGSVISLFLSkWMAKKSTGTVVIDTP 80
                  478888888754777766644444444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
  Myc_target_1  22 ilaFcvSmvvGLllgaliyvlltwlsrrra 51 
                   i  F+ Smv+ +llg+l  +++ w+sr r 
    EGE27311.1 198 IAYFVTSMVMDILLGILASAIVMWFSRLRE 227
                   556999*********************885 PP

>> RDD  RDD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.8    0.0045        11      16      70 ..      16      72 ..       3      99 .. 0.62
   2 ?    4.8   1.3     0.011        29      14      64 ..     158     216 ..     157     227 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0045
         RDD 16 vllliislllallivall..nakasaneavagslllllllvlllvllvyqllllskk 70
                ++++i+ ++l+++++ ++  ++++ + ++ a + ll++++ ++++l++ +++  +++
  EGE27311.1 16 IVFSIVFMVLSQVFGLGNvhASGGLNYVSLAVMCLLYGMIGSVISLFLSKWMAKKST 72
                566666666666666644544444555555555555555555555555554444444 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.011
         RDD  14 Dlvllliislllallivall........nakasaneavagslllllllvlllvllvyql 64 
                 D+v l++i +++++++++           a++ + ++++g+ +++ ++v+ ++l++   
  EGE27311.1 158 DMVTLALIQGVVNAFVMFFAriignfvdRAIFKNESSSPGIAYFVTSMVMDILLGILAS 216
                 66677777777777666644677777775555555555555555555555554444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2332.59
//
Query:       EGE27312.1  [L=469]
Description: GTP-binding proten HflX [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-28   99.2   9.1    2.9e-28   98.3   9.1    1.5  1  GTP-bdg_M     GTP-binding GTPase Middle Region
    3.2e-27   95.0   0.0    9.2e-27   93.6   0.0    1.9  1  GTP-bdg_N     GTP-binding GTPase N-terminal
    1.1e-23   83.4   0.0    5.4e-23   81.3   0.0    2.1  2  MMR_HSR1      50S ribosome-binding GTPase
    9.8e-06   25.2   0.0    1.7e-05   24.4   0.0    1.5  1  FeoB_N        Ferrous iron transport protein B
    0.00018   21.1   0.6       0.41   10.2   0.2    2.9  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    0.00031   20.4   0.6       0.12   12.0   0.1    2.6  3  cobW          CobW/HypB/UreG, nucleotide-binding domain
    0.00033   20.6   0.1    0.00078   19.4   0.1    1.7  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
    0.00046   20.4   0.0     0.0014   18.8   0.0    1.9  1  MnmE_helical  MnmE helical domain
      0.001   19.0   0.1       0.14   12.1   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
     0.0017   17.8   0.2      0.015   14.8   0.2    2.2  1  Arf           ADP-ribosylation factor family
     0.0019   18.4   0.0      0.027   14.7   0.0    2.4  1  Roc           Ras of Complex, Roc, domain of DAPkinase
     0.0038   16.6   0.0     0.0079   15.6   0.0    1.5  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
     0.0074   16.4   0.0       0.09   12.8   0.0    2.4  1  Dynamin_N     Dynamin family
  ------ inclusion threshold ------
      0.019   14.4   0.0      0.037   13.5   0.0    1.5  1  SRPRB         Signal recognition particle receptor beta subun
      0.064   12.2   0.0        0.2   10.6   0.0    1.7  2  Ran-binding   RanGTP-binding protein
      0.072   13.6   0.0       0.42   11.1   0.0    2.3  2  ABC_tran      ABC transporter
      0.072   12.2   0.7          2    7.5   0.1    2.7  3  G-alpha       G-protein alpha subunit


Domain annotation for each model (and alignments):
>> GTP-bdg_M  GTP-binding GTPase Middle Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   9.1   2.8e-31   2.9e-28       1      79 []     124     202 ..     124     202 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 2.8e-31
                 H--SHHHHHHHHHHHHHHHHHHHCXXXXXXXXX..X..XXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHH.....T CS
   GTP-bdg_M   1 rArtkeaklQVelAqlkyllprLeglgkelsrqgGgigtrGpGetkleldrrlireriaklkkeLekvkkkrelqrkkR 79 
                 rArt+e+klQVelAql++l +rL++ +++l+rq+Ggig+rGpGet+le+drrl++ r+++lk +L+kvk++r++ r+kR
  EGE27312.1 124 RARTHEGKLQVELAQLNHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLQIRVTQLKAKLDKVKQTRKQGRAKR 202
                 9***************************************************************************998 PP

>> GTP-bdg_N  GTP-binding GTPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.0   8.7e-30   9.2e-27       3      89 .]      28     122 ..      26     122 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 8.7e-30
   GTP-bdg_N   3 sleEleeLaktaglevvgevvqkrekpdpatyiGkGkveeikelvee........eeadlvifddeLspsqqrnLekelevkViDRtqLILdIFA 89 
                 +leE++ L+++ag++ ++ ++ +r+kp++++++G+Gk+eei+e+v++        ++  +vif+++L+psq+rnLe+ ++++V+DRt LILdIFA
  EGE27312.1  28 DLEEFRLLVHSAGANEIEIITGSRSKPHAKYFVGTGKAEEIAEAVKRfrdtnddnTDDVIVIFNHTLTPSQERNLESLIKCRVLDRTGLILDIFA 122
                 79*******************************************9966554433244599*********************************8 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.6   1.6e+03      33      58 ..      93     123 ..      60     157 .. 0.60
   2 !   81.3   0.0   5.1e-26   5.4e-23       2     114 .]     210     327 ..     209     327 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.6
                 SSSE.EEEEEEETTEEEEEEECGGCS.....S CS
    MMR_HSR1  33 Trdi.negrvklkgkeielvDtpGli.....e 58 
                 T+++ +e++++ +  +++++D  Gli     +
  EGE27312.1  93 TLTPsQERNLE-SLIKCRVLDRTGLIldifaQ 123
                 44442222232.33567777777765433332 PP

  == domain 2  score: 81.3 bits;  conditional E-value: 5.1e-26
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHHHHHHHHHH....HHCTSEEEEEEETTTTCSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseekglgkafla....leeadlillvvdaseeklkplde 95 
                 + +vG++N+GKStL+n lt+++  ++d+ ++T+d++ +rvk+ g  +++l+Dt+G++   +  ++l ++f+a      eadl+l+v+da++e+++++ e
  EGE27312.1 210 ISLVGYTNAGKSTLFNHLTDDNIYAADQLFATLDPTLRRVKWPGvGNVVLADTVGFVR--HLPHELVESFHAtleeTLEADLLLHVIDAASEDMHAQIE 306
                 789**************************************99999*********776..66667777777732225569********99888888889 PP

                 HHHHHHHH..TTSEEEEEEES CS
    MMR_HSR1  96 eleellee..akkplilvlnk 114
                  ++++le+  a+ p++lv+nk
  EGE27312.1 307 AVNDVLEQiqADAPILLVFNK 327
                 999998888899********8 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.6e-08   1.7e-05       2     119 ..     209     332 ..     208     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.6e-08
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT.EEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGG..HHHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg.keveivDlPGiYslsayseeekvardflleeepdvvvnvvdatn..lernLyL 97 
                 t+ lvG  n+Gk+tlfn+lt+ + + +     t + +  ++k+ g  +v + D  G     ++   e+   ++  + e+d++++v+da++  ++ ++  
  EGE27312.1 209 TISLVGYTNAGKSTLFNHLTDDNIYAADQLFATLDPTLRRVKWPGvGNVVLADTVGFVRHLPHELVESFHATLEETLEADLLLHVIDAASedMHAQIEA 307
                 689****************************************99899*********999999999999998888999*********976225555555 PP

                 HHHHHH...TTSSEEEEEETHHHHH CS
      FeoB_N  98 tlqlle...lgvpvvlalnmideae 119
                 + ++le    ++p++l++n+id+  
  EGE27312.1 308 VNDVLEqiqADAPILLVFNKIDKSG 332
                 5555442217899999999999864 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0026       2.7       3      26 ..     207     230 ..     205     240 .. 0.86
   2 !   10.2   0.2   0.00039      0.41      93     137 ..     286     333 ..     274     371 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0026
                 EEEEEEEESTTSSHHHHHHHHHHH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyk 26 
                 i +i+++g +++GK+TL  +L+ +
  EGE27312.1 207 IPTISLVGYTNAGKSTLFNHLTDD 230
                 77899***************9865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00039
                 T-SEEEEEEETT.TBSTHHHHHHHHHHHHTTTE..EEEEEESCGSTHH CS
    GTP_EFTU  93 vlDgavlvvdav.eGvepqteevlrlalkegvp..iivfiNKmDrlka 137
                  +D+ + v+da+ e++ +q e v  ++ + +    i ++ NK+D+ ++
  EGE27312.1 286 EADLLLHVIDAAsEDMHAQIEAVNDVLEQIQADapILLVFNKIDKSGE 333
                 589999***9873679999999988887766655499999****9854 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         5   5.2e+03       8      34 ..      59      91 ..      59     100 .. 0.65
   2 !    6.1   0.0    0.0072       7.6       1      22 [.     208     229 ..     208     238 .. 0.85
   3 !   12.0   0.1   0.00011      0.12      81     155 ..     253     333 ..     233     343 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5
                STTCCHHHHHHHHH......CT--SS-EEEEES CS
        cobW  8 flGsGKTtLlnhll......enraglklavivN 34
                f+G+GK   + + +      ++ +  ++ vi N
  EGE27312.1 59 FVGTGKAEEIAEAVkrfrdtNDDNTDDVIVIFN 91
                678888877777776665544445555666665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0072
                 EEEEEEESTTCCHHHHHHHHHC CS
        cobW   1 pvtvltGflGsGKTtLlnhlle 22 
                 p++ l+G+  +GK+tL nhl++
  EGE27312.1 208 PTISLVGYTNAGKSTLFNHLTD 229
                 56889**************984 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00011
                 TT-SEEEEEECTTTTHHHH..HTT.SHHHHHCCCECEEEEEEETTTH...CCHCCHHHHHHHHHHTSS.EEEEE-HHHHCH CS
        cobW  81 erldviliEttGlaePapv..aft.eeelksdltldavvavvDaknl..eaeeekieekaedqlaaad.llvlnKtDllde 155
                 +  +v+l  t+G +   p   + + + +l++ l++d ++ v+Da+    +a+ e  ++ +e+  a a  llv+nK+D   e
  EGE27312.1 253 GVGNVVLADTVGFVRHLPHelVESfHATLEETLEADLLLHVIDAASEdmHAQIEAVNDVLEQIQADAPiLLVFNKIDKSGE 333
                 457889999999666555541444799*****************65454555566666665544444427899****8765 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   7.4e-07   0.00078      40      99 ..     303     364 ..     285     370 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.4e-07
  MMR_HSR1_Xtn  40 vtvDdlidviegnrvYipclyvlNKiDlisleeldelare..pnsvviSaekelnldeLkek 99 
                   ++++ + dv+e+ +   p l+v+NKiD+  +    + + +  p+ v +Sa+++l++++L+ +
    EGE27312.1 303 AQIEAVNDVLEQIQADAPILLVFNKIDKSGEPAKIHYQDHgvPHRVYVSAKENLGINQLMLA 364
                   5689999********************9544443333433459***************9865 PP

>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.4e-06    0.0014      64     181 ..     174     417 ..     129     430 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.4e-06
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................ RF
  MnmE_helical  64 eeelaekleelkeelekllatakrgellreGik................................................................ 96 
                   ++ l+ ++++lk++l+k+ +t k+g+  r+  +                                                                
    EGE27312.1 174 RRLLQIRVTQLKAKLDKVKQTRKQGRAKRQKSDiptislvgytnagkstlfnhltddniyaadqlfatldptlrrvkwpgvgnvvladtvgfvrhlp 270
                   44677789999**************9999955599************************************************************** PP

                   ....................................................xxxxxxxxxxxxxxx........................xxxxxx RF
  MnmE_helical  97 ....................................................Dllkekeekeeeevl........................kiSakt 117
                                                                                     +                        ++Sak+
    EGE27312.1 271 helvesfhatleetleadlllhvidaasedmhaqieavndvleqiqadapilL-------------VfnkidksgepakihyqdhgvphrvYVSAKE 354
                   *****************999999999999777777777744433333333330.............14444444444444555555666669***** PP

                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical 118 gegieeLeeaikeleleeieeeplltnaRhkealekalealeeakealeaglpldlvaedLrea 181
                   + gi++L  a++el ++++++   lt   h  al+++l++l  ++++  ++l +++++++L  a
    EGE27312.1 355 NLGINQLMLAVQELLSGQLNH-YTLTLPHHAGALKNTLHELGVIESESFDELGHQILSVQLSPA 417
                   ***********9966545555.89*****************85555554555688888877655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00013      0.14      80     125 ..     189     233 ..     167     267 .. 0.65
   2 ?    4.5   0.0     0.028        29      43      96 ..     315     364 ..     283     391 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                  EE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  80 llvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                   +v++++k+   + k++ +d  t+ lvG + +GKStL n+l+ ++  
   EGE27312.1 189 DKVKQTRKQ--GRAKRQKSDiPTISLVGYTNAGKSTLFNHLTDDNIY 233
                  444333222..23333333337999****************987554 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.028
                  HHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEE.EE--TTTHTTHHHHHHH CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeeeeleelkeelealgyev.llvsaktkegleelkel 96 
                   ++++++++v+nKiD   e       k ++++ g++  ++vsak++ g+++l  +
   EGE27312.1 315 IQADAPILLVFNKIDKSGEPA-----KIHYQDHGVPHrVYVSAKENLGINQLMLA 364
                  3567899********999888.....66677777654256677777777666544 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.4e-05     0.015      17     133 ..     210     336 ..     195     370 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-05
                 EEEEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEETTE.EEEEEEE-S.SGGG....GGGGGGGCTTE...SEEEEEEETT-CTTHHHHHHH CS
         Arf  17 illlGLDnaGKtTilkklkleelvt...tvPTigfnveeleiknl.kftvwDvGG.qekl....RplWknYfekt...davifvvDsadreRleeakee 103
                 i l+G  naGK+T+ ++l+++++        T+ ++ ++++  ++ ++ + D  G  ++l     + ++  +e+t   d +++v+D+a ++ ++   e 
  EGE27312.1 210 ISLVGYTNAGKSTLFNHLTDDNIYAadqLFATLDPTLRRVKWPGVgNVVLADTVGfVRHLphelVESFHATLEETleaDLLLHVIDAASED-MHAQIEA 307
                 6689*****************9865444899**********9888345566755524444100023333333333333889*****98765.6777777 PP

                 HHHHCTSGCCTTSEEEEEEE-TTSTTSS-H CS
         Arf 104 LkalleeeelkevallvlaNKqDlpealse 133
                 ++ +le+   +++++l++ NK+D ++   +
  EGE27312.1 308 VNDVLEQI-QADAPILLVFNKIDKSGEPAK 336
                 88888654.5789999999****9876555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.5e-05     0.027       2     120 .]     210     330 ..     209     330 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-05
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCT..TTT-HHHHC......TSCEEEEEEEGHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerf..rslhplylr......eaalailvydsrss 92 
                 + lvG +++GK++l++++++d++    +    +d + ++v k  gv         ++ + Dt G  r   ++l +++        ea+l++ v+d+ s+
  EGE27312.1 210 ISLVGYTNAGKSTLFNHLTDDNIYAADQLFATLDPTLRRV-KWPGVG--------NVVLADTVGFVRHlpHELVESFHAtleetlEADLLLHVIDAASE 299
                 679********************99999988888877776.455543........34456888843331244544444223333467888889995554 PP

                 ...HCHHHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  93 ...enlkeWlkelkkvagkspvilvgnkiDl 120
                    ++++   + l++ + ++p++lv nkiD+
  EGE27312.1 300 dmhAQIEAVNDVLEQIQADAPILLVFNKIDK 330
                 22246666666778888899*********95 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.5e-06    0.0079       4     124 ..     212     331 ..     209     352 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.5e-06
   Gtr1_RagA   4 LmGksgsGKtsmrsiiF.dnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeif.rnvg..vliyVfDvesreleedletl 98 
                 L+G  ++GK+++ + +  dn+ a d  +l at d +  +v+  g  ++ l D  G  + + + l ++ +  + ++ +   l++V+D+ s++++ ++e  
  EGE27312.1 212 LVGYTNAGKSTLFNHLTdDNIYAAD--QLFATLDPTLRRVKWPGVGNVVLADTVGFVRHLPHELVESFHATLeETLEadLLLHVIDAASEDMHAQIEAV 308
                 8999*****9987665516777777..6889************************9888777555544444404444338********99999999999 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDli 124
                 +++le+++   p + v    +K+D+ 
  EGE27312.1 309 NDVLEQIQADAPILLV---FNKIDKS 331
                 9999887766665555...5666654 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   8.5e-05      0.09       1      35 [.     210     244 ..     210     316 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.5e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrp 35 
                 i +vG +++GKS++ n+L+ ++i   ++   T  p
  EGE27312.1 210 ISLVGYTNAGKSTLFNHLTDDNIYAADQLFATLDP 244
                 789******************99988888777666 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.5e-05     0.037       4     105 ..     208     314 ..     205     338 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.5e-05
                 -EEEEE-STTSSHHHHHHHHHHS...S---B---SS-EEETTG...GGTT-SEEEETT-GC.CSHHHHHHHHH....HGGEEEEEEEEETTS-HHHHHH CS
       SRPRB   4 pavllvGlsdsGKTslftrLttd...svkktvtSqessaalkvksekgskltliDfPGhek.lrqklleklka....ksslkglvfvvDStidpkevke 94 
                 p++ lvG +++GK +lf++Lt d   ++ +  + ++++   +vk     ++ l+D  G ++ l ++l+e++ a      ++  l++v+D++ ++  ++ 
  EGE27312.1 208 PTISLVGYTNAGKSTLFNHLTDDniyAADQLFATLDPT-LRRVKWPGVGNVVLADTVGFVRhLPHELVESFHAtleeTLEADLLLHVIDAASED--MHA 303
                 7899*******************542222223333443.3455556666788888888775467777776443110033456688888877554..333 PP

                 HHHHHHHHHHH CS
       SRPRB  95 vAEllyeilli 105
                   E + ++l +
  EGE27312.1 304 QIEAVNDVLEQ 314
                 44545555543 PP

>> Ran-binding  RanGTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   1.3e+03      87     121 ..     176     206 ..     164     215 .. 0.64
   2 ?   10.6   0.0   0.00019       0.2      77     143 ..     255     322 ..     249     348 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
  Ran-binding  87 LtksLkkeieelgerleeaaekeekskkkeeekee 121
                  L   L+  +++l+ +l+++ ++ ++ +  +++k+ 
   EGE27312.1 176 L---LQIRVTQLKAKLDKVKQTRKQGR-AKRQKSD 206
                  4...67778888888888877666444.4444444 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00019
  Ran-binding  77 GntsLesaveLtksLkkei.eelgerleeaaekeekskkkeeekeelkkviedikeLLkrieeaiPll 143
                  Gn++L  +v ++++L +e+ e+++ +lee+ e+    +  ++++e +++ ie+++++L++i+ + P+l
   EGE27312.1 255 GNVVLADTVGFVRHLPHELvESFHATLEETLEADLLLHVIDAASEDMHAQIEAVNDVLEQIQADAPIL 322
                  9**************8886268**********9999999999999999999***************98 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.2   2.3e+03      27      52 ..     117     148 ..     114     207 .. 0.63
   2 ?   11.1   0.0    0.0004      0.42      13      42 ..     209     238 ..     202     323 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.2
                 HHHHHTTSS--SEEEEEETTCEGGG......B CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx......x RF
    ABC_tran  27 LlkllagllkpteGeilldgkdlke......q 52 
                 +l ++a+  +  eG+++++ ++l++      +
  EGE27312.1 117 ILDIFAQRARTHEGKLQVELAQLNHlatrlvR 148
                 56777777788888887777777774333331 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0004
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGei 42 
                 ++ +vG + aGKStL++ l+     +++++
  EGE27312.1 209 TISLVGYTNAGKSTLFNHLTDDNIYAADQL 238
                 6789***************99888777776 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.66   6.9e+02      48     113 ..      91     151 ..      85     197 .. 0.69
   2 ?    7.5   0.1    0.0019         2       7      44 ..     191     228 ..     183     242 .. 0.78
   3 ?    1.7   0.0      0.11   1.1e+02     263     280 ..     313     329 ..     276     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.66
                 S----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCCS-HCHHHH.... CS
     G-alpha  48 kkgfseeelatwraviqlnivrsiktilealesleselsesfelqelkerldplkkveasliakls 113
                 +++ + ++ +++ ++i   +++   +il+++ +   ++     + +l+ +l++l+++  +l +  +
  EGE27312.1  91 NHTLTPSQERNLESLIKCRVLDRTGLILDIFAQRARTH-----EGKLQVELAQLNHLATRLVRGWT 151
                 55556666688999999999999999999999965555.....77777777777777766655444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0019
                 XXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHH CS
     G-alpha   7 idkslkaerkarkkkrevkllllGqseSGKsTilkqlk 44 
                 + +  k+ r++r+k+ + ++ l+G    GKsT++++l 
  EGE27312.1 191 VKQTRKQGRAKRQKSDIPTISLVGYTNAGKSTLFNHLT 228
                 555556667777777777****************9986 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.11
                 C-GGGTTSEEEEEEE-HH CS
     G-alpha 263 nnkllkntpiiLflnKlD 280
                 + ++ +++pi+L++nK+D
  EGE27312.1 313 E-QIQADAPILLVFNKID 329
                 4.466899*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      723  (0.0403257); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 3218.04
//
Query:       EGE27313.1  [L=292]
Description: dihydropteroate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-78  262.5   0.2    4.4e-78  262.3   0.2    1.0  1  Pterin_bind  Pterin binding enzyme
  ------ inclusion threshold ------
      0.011   16.2   0.5       0.32   11.5   0.1    2.7  2  GDPD_2       Glycerophosphoryl diester phosphodiesterase fami


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.3   0.2   4.9e-82   4.4e-78       1     244 []      20     275 ..      20     275 .. 0.96

  Alignments for each domain:
  == domain 1  score: 262.3 bits;  conditional E-value: 4.9e-82
                  EEEEETTTTTCHCCHHCTHHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHHHC..TSEEEEE-S-HHHHHHHHHTTSEE CS
  Pterin_bind   1 mgilNvtpdsfsdggkfedldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrdea..dvpisiDttkaevaeaAlkagadi 96 
                  mg+lN+tpdsfsdgg+f+ ld+al +a++m++ G di+DiggestrP a  v+ +eelerv+p+++a+r+++  d+++s+Dt+++ v+ +A+ agadi
   EGE27313.1  20 MGVLNMTPDSFSDGGRFNHLDAALVHAEQMIAYGVDIIDIGGESTRPYAPKVSTDEELERVIPIIAAIRENFgeDLWLSVDTSDPAVMLQAIGAGADI 117
                  9*********************************************************************77789*********************** PP

                  EEETTTTSSSTTHHHHHHHHT-EEEEESECSSTTTHCC..CC.CCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHH CS
  Pterin_bind  97 vNdvsgeerdpkmlelvaeagaavvvmhmrgtpktmqe..ee.gqyedvveeveaflearveaaeeaGvaperillDpgigfgkteehnlellrrlde 191
                  vNdv+g++  +    +va+ +++vv+mh+rgtp+tm++  +e   y+dv +e++++l+ r+++a  aG+++e+i++D+g+gf+k+ eh+++++++l++
   EGE27313.1 118 VNDVRGLS-REGACDMVADLECPVVIMHSRGTPDTMTQtmNElTSYNDVLAEISTELQIRIDKAMDAGIRQEKIIIDIGMGFSKNYEHHIQIMQNLQQ 214
                  ********.88899*******************999752356789***************************************************** PP

                  HHHTTSSEBEEEGTTGHHHHHHHCTTC........HGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 192 lrealevpvllGvSrksflgrllelgk........aeeRdagtaaflalaaaaGadivrVh 244
                  + +++++p+l GvSrk+flg++l + +        + eRd +   ++++a ++G++ivrVh
   EGE27313.1 215 IIQHFQMPMLFGVSRKRFLGEVLTNSGleylknhqPIERDNLGTLAHFIALQQGVHIVRVH 275
                  *********************99444468999999*************************9 PP

>> GDPD_2  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.039   3.5e+02      15      24 ..      48      57 ..      40      57 .. 0.89
   2 ?   11.5   0.1   3.6e-05      0.32       4      25 ..      95     119 ..      94     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.039
      GDPD_2 15 elvgaGVdgI 24
                +++++GVd I
  EGE27313.1 48 QMIAYGVDII 57
                89******77 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.6e-05
      GDPD_2   4 fW.ttdd..eavwrelvgaGVdgIn 25 
                 +W  +d+  +av+ +++gaG+d +n
  EGE27313.1  95 LWlSVDTsdPAVMLQAIGAGADIVN 119
                 79999997788***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2277.15
//
Query:       EGE27314.1  [L=247]
Description: ribosomal RNA small subunit methyltransferase E [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-64  214.9   0.0      1e-63  214.7   0.0    1.0  1  Methyltrans_RNA  RNA methyltransferase
  ------ inclusion threshold ------
      0.059   13.5   0.0        4.7    7.4   0.0    2.4  2  COX4_pro_2       Bacterial aa3 type cytochrome c oxidase subu


Domain annotation for each model (and alignments):
>> Methyltrans_RNA  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.7   0.0   1.2e-67     1e-63       2     224 ..      20     235 ..      19     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 214.7 bits;  conditional E-value: 1.2e-67
                      EEEHHHHHHHHTTTT--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEEEEE---SSSSEEEEEEE--SSHHHHHHHHHHHHTT-SEEEEEE- CS
  Methyltrans_RNA   2 sltdeeahHlvkVlRlkegdeiklfdgdgkeyeaeieeiskkkvtvkilekeeenkespekitlaqalpkgdklelilqkatElGvseivplis 95 
                       l d+ +hH +kVlR  +gd+  lfdg g+ey++++++i+kk+++vki++ +++n+ +p +  + +++++gd++++++qkatE+Gv+ i++l s
       EGE27314.1  20 ALPDHVTHHWCKVLRASVGDCAFLFDGMGGEYTVTLTHIHKKSASVKIDAYHPINRTPPFRASIGLVMSRGDRMDYAIQKATEMGVHCIHLLTS 113
                      578999**************************************************************************************** PP

                      TTSSS...HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHHHHHCSCCEEEEEEETTSSEBGGGSSHCCHTHHCSEEEEEE--TT--- CS
  Methyltrans_RNA  96 ersvvkldekkkdkklerwqkilieAaeQsgrtrlpevkepislkelleelkeadlklildeeekksleelsekkkelkevkvlliiGPEGGfs 189
                      +r+++ l+ +++ kkl +wq+++ +A+eQ+g +++p++  pi l+e++++++++ + l+l  +e  +  ++++   +    ++ l+iG EGG+s
       EGE27314.1 114 DRCQAHLKYDRDFKKLTHWQSVAVAACEQCGMNIIPNIIAPILLDEWVANCQDELK-LVLALSE--NNPTFNKLVPK----NISLLIGAEGGLS 200
                      *****************************************************866.7777772..22233333333....9************ PP

                      HHHHHHHHHTTCEEEB-SSS---HHHHHHHHHHHH CS
  Methyltrans_RNA 190 ekEiellkeagfkpvsLgpriLRteTAalaalsal 224
                      ++Ei+l+  +gf p ++g+r+LRteTA+++alsal
       EGE27314.1 201 PREIDLAIHHGFVPWRIGERVLRTETAPVVALSAL 235
                      *********************************98 PP

>> COX4_pro_2  Bacterial aa3 type cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00052       4.7       6      20 ..      87     101 ..      83     101 .. 0.87
   2 ?    3.4   0.0    0.0095        85      24      37 ..     126     139 ..     122     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00052
  COX4_pro_2   6 yetAdeMDyaeHekT 20 
                 ++ +d MDya +++T
  EGE27314.1  87 MSRGDRMDYAIQKAT 101
                 6779*********99 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0095
  COX4_pro_2  24 Flkltkwgtlavav 37 
                 F klt w ++ava+
  EGE27314.1 126 FKKLTHWQSVAVAA 139
                 89**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2096.80
//
Query:       EGE27315.1  [L=35]
Description: hypothetical protein EA1_03385 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 277.87
//
Query:       EGE27316.1  [L=558]
Description: trifunctional thioredoxin/methionine sulfoxide reductase A/B protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-59  198.5   0.3    1.1e-58  197.7   0.3    1.4  1  PMSR           Peptide methionine sulfoxide reductase
    7.1e-44  148.8   0.0    1.5e-43  147.7   0.0    1.6  1  SelR           SelR domain
    7.9e-11   41.9   0.0    1.7e-10   40.8   0.0    1.5  1  Redoxin        Redoxin
    6.9e-09   35.9   0.0    5.8e-08   33.0   0.0    2.2  2  Thioredoxin_8  Thioredoxin-like
    1.3e-08   34.8   0.0    2.7e-08   33.8   0.0    1.5  1  AhpC-TSA       AhpC/TSA family
    3.2e-07   30.8   0.0    7.2e-07   29.6   0.0    1.6  1  Thioredoxin_2  Thioredoxin-like domain
    0.00027   20.9   0.0     0.0048   16.8   0.1    2.5  2  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.037   14.8   0.0       0.15   12.8   0.0    2.0  2  TniQ           TniQ
      0.091   12.4   0.0       0.18   11.5   0.0    1.4  1  YtfJ_HI0045    Bacterial protein of unknown function (YtfJ_HI


Domain annotation for each model (and alignments):
>> PMSR  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.7   0.3   5.6e-62   1.1e-58       1     153 []     227     378 ..     227     378 .. 0.98

  Alignments for each domain:
  == domain 1  score: 197.7 bits;  conditional E-value: 5.6e-62
                 EEEEE-S-HHHHHHHHCTSTTEEEEEEEEESS..S-SS--HHHHHTTTT--EEEEEEEEETTTS-HHHHHHHHHHTS-TT-SSEETTEESGGG--EEEE CS
        PMSR   1 eavlagGCFWgveklfeklkGvlstevGYagG..ktenptYeevcsgktghaEavevvydpekvsleellelffeihDptqlnrqgnDvGtqYrsaiyy 97 
                 ++ lagGCFWgve++fe+++Gv+++ +GYa+G  + +np+Ye+v  g +ghaE+v+vvyd++kv+l++ll+++f+i+Dpt++n+qg+D+G qYr+++yy
  EGE27316.1 227 TIHLAGGCFWGVEAYFERIDGVVDAVSGYANGneTIANPSYEQVIAG-SGHAETVKVVYDADKVDLDTLLQYYFRIVDPTSVNKQGHDRGIQYRTGVYY 324
                 588*****************************65567*********9.9************************************************** PP

                 SSCCHHHHHHHHHHHHHTTHTTSSS---EEEEG-SEEE--CCCTTHHHH-TTS--T CS
        PMSR  98 tneeqkevaeevleelqkkkalkkkivteieplkefykaeeyHqqYleknpegych 153
                 t++++k+++e++l+elq+k  +k++iv+e  pl++f +aeeyHq+Yl+knp+gych
  EGE27316.1 325 TDPSDKAIIENALNELQQK--YKAPIVVENLPLRHFSPAEEYHQDYLTKNPNGYCH 378
                 *******************..**********************************8 PP

>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.0   7.5e-47   1.5e-43       2     121 .]     418     537 ..     417     537 .. 0.98

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 7.5e-47
                 HHCTSHCCHHHHHHHTT-SSTTSSSTSS--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEECT CS
        SelR   2 lkkkLtpeqyevlrekgterpftgeyekekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvFed 100
                 lk++Lt+ qy++++++gter+f+++y++ +++G+y+++v+gepLf s++k++sgcGwpsF+++i+ + +++++dts++m rtev+++ +++hlGhvF d
  EGE27316.1 418 LKQSLTKAQYDITQNAGTERAFSHAYDHLFDDGLYVDIVSGEPLFLSTDKYNSGCGWPSFTKPIDPQVISKHTDTSYNMIRTEVRSRIANSHLGHVFPD 516
                 789************************************************************************************************ PP

                 SSSSS.SEEEEE-CCCEEEEE CS
        SelR 101 gpkpttgkrycinsvslkfkp 121
                 gpk + g+rycin+ +lkf p
  EGE27316.1 517 GPKARGGLRYCINGDALKFIP 537
                 *******************86 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   8.4e-14   1.7e-10      27     135 ..      72     179 ..      44     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 8.4e-14
                 TTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH.........HHHHHHHTT-TSEEEE-TTSHHHHHTT-TTEEE.GGGEEE- CS
     Redoxin  27 kgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf.........vkefwgkeglkfpvlsDgsaaftkalGlrleedaseglrtp 116
                 ++k+++v f+++ +cP C a + +  +  +  +  g++++ v + +             ++++ ++ ++ pvl+D s+++ k+lG++          +p
  EGE27316.1  72 PNKPTLVKFWAS-WCPLCLATLQETHDWRDDPNLAGFNIITVASPTHLNekntqdftdWYQVLQADYPNLPVLIDSSGQLIKELGVQ---------VYP 160
                 799*********.*******999999998888**********777666655533434466666668889****************99.........9** PP

                 EEEEEEETTEEEEEEESSS CS
     Redoxin 117 ryavidedgkvvylevepe 135
                 ++a++d++g++vyl++++ 
  EGE27316.1 161 SWAILDKNGQLVYLNKGNL 179
                 **************99875 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.9e-11   5.8e-08       1      94 [.      73     170 ..      73     171 .. 0.85
   2 ?   -0.1   0.0      0.62   1.2e+03      21      68 ..     335     383 ..     321     395 .. 0.62

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.9e-11
                    .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-........SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEE CS
  Thioredoxin_8   1 gkvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsl........dkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvv 88 
                    +k +l+ f+aswcp c a +++ ++  ++ +   +++i+ v +         ++  ++ ++l   + +  ++p+  +++ +l+k+++v+ +P+  +
     EGE27316.1  73 NKPTLVKFWASWCPLCLATLQETHDWRDDPN-LAGFNIITVASpthlneknTQDFTDWYQVL---QADYPNLPVLIDSSGQLIKELGVQVYPSWAI 164
                    699**************************99.79*********8777644434444444444...55599999999999***************** PP

                    E-TT-B CS
  Thioredoxin_8  89 ldknge 94 
                    ldkng+
     EGE27316.1 165 LDKNGQ 170
                    ****97 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.62
                    HHHHHHHHHHHHTTSEEEEEEE-.SS-HHHHHHHGGGS-TTSEE.EE-T CS
  Thioredoxin_8  21 pklkelyeklkkkkkveivyvsl.dkkeeefekylkknkkpwlsvpfdd 68 
                    + l+el++k+k++  ve + +      ee  ++yl+kn++  ++v+ + 
     EGE27316.1 335 NALNELQQKYKAPIVVENLPLRHfSPAEEYHQDYLTKNPNGYCHVDLSL 383
                    5578888888853333333332223445667788888877777777655 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.3e-11   2.7e-08      25     123 ..      73     173 ..      57     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.3e-11
                 TSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH...HHHHHHHH-H.......SSEEEE-TTSHHHHHTT-EETTTTECSCEEEE CS
    AhpC-TSA  25 gkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe...shkkfiekes......lnfpllsDeegkvakaygvlkeekglalratfv 114
                 +kp+++ f+++ wcp C + l++  +  ++   +g+++i v + ++    + ++f + ++       n+p+l D++g+++k++gv        +++  +
  EGE27316.1  73 NKPTLVKFWAS-WCPLCLATLQETHDWRDDPNLAGFNIITVASPTHLnekNTQDFTDWYQvlqadyPNLPVLIDSSGQLIKELGVQ------VYPSWAI 164
                 589********.*****************************9866654668888888888999**99*******************......9****** PP

                 E-TTSBEEE CS
    AhpC-TSA 115 idkegkiry 123
                 +dk+g ++y
  EGE27316.1 165 LDKNGQLVY 173
                 *****9987 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   3.6e-10   7.2e-07       5     105 ..      73     184 ..      69     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 3.6e-10
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkel......ddvtvrvllfp..lkpsfepkavaiwcakekkkafkd...ieenvelarkygvrgtPtivfldg 89 
                    +kp+lv f++++Cp C +  +e+ ++       ++++++++ p  l+++  + +++ ++  +     +    i+++ +l +++gv+  P++ +ld+
     EGE27316.1  73 NKPTLVKFWASWCPLCLATLQETHDWrddpnlAGFNIITVASPthLNEKNTQDFTDWYQVLQA-DYPNLpvlIDSSGQLIKELGVQVYPSWAILDK 167
                    79************************9888888888888888888777766666666666665.34444999************************ PP

  Thioredoxin_2  90 k.eivarlpGyvpaeel 105
                    + + v+  +G +++e+ 
     EGE27316.1 168 NgQLVYLNKGNLSFEQV 184
                    **999999**9999986 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.4e-06    0.0048      13      33 ..      68      88 ..      65     100 .. 0.88
   2 ?    0.5   0.0       0.3   5.9e+02      58      85 ..     144     172 ..     125     188 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.4e-06
                 HHTTTSSEEEEEEE-TTSHHH CS
  Thioredoxin 13 evakekklvlveFyApwCghC 33
                  v +++k+ lv+F+A+wC+ C
   EGE27316.1 68 SVIDPNKPTLVKFWASWCPLC 88
                 577889*************** PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.3
                  TTTSHHHHHHTT-SSSSEEEEE.ETTEEE CS
  Thioredoxin  58 vdenedlakkyevegiPtlklf.kngkev 85 
                  +d++ +l k+++v+ +P   ++ kng+ v
   EGE27316.1 144 IDSSGQLIKELGVQVYPSWAILdKNGQLV 172
                  678889999********988762556654 PP

>> TniQ  TniQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.3e-05      0.15      66     119 ..      45      99 ..      16     108 .. 0.75
   2 ?   -2.3   0.0       3.4   6.7e+03      53     106 ..     485     527 ..     455     528 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.3e-05
        TniQ  66 eemtlegylasvllekakrekkllgeaisrrglrrsgrryCplClaedgepy.wr 119
                  ++tl+++ a  +l+++   +  + +  ++  l + ++ +CplCla+ +e + wr
  EGE27316.1  45 PSNTLAQLSALPQLTQGLGDTGKSVIDPNKPTLVKFWASWCPLCLATLQETHdWR 99 
                 4455555555555555666666666777888899*************99988776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.4
        TniQ  53 rLaeltglspeeleemtlegylasvllekakrekkllgeaisrrglrrsgrryC 106
                  ++++t++s +++            ++ +++ +   lg+ +++    r g+ryC
  EGE27316.1 485 VISKHTDTSYNMI-----------RTEVRSRIANSHLGHVFPDGPKARGGLRYC 527
                 4555555555555...........234444555677778888888888888888 PP

>> YtfJ_HI0045  Bacterial protein of unknown function (YtfJ_HI0045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.9e-05      0.18     100     151 ..     135     185 ..     130     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.9e-05
  YtfJ_HI0045 100 kefpwsqlvlDekgvvkkaWdLkeessaiivldkeGkvkfvkeGaLsekevk 151
                   ++p+  +++D++g++ k   ++   s  ++ldk+G++ + ++G+Ls ++v 
   EGE27316.1 135 ADYPNLPVLIDSSGQLIKELGVQVYPSW-AILDKNGQLVYLNKGNLSFEQVS 185
                  6789999999*********999999886.679***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4301.85
//
Query:       EGE27317.1  [L=469]
Description: S-adenosyl-L-homocysteine hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.3e-124  413.0   0.0    1.3e-71  241.2   0.4    2.0  2  AdoHcyase      S-adenosyl-L-homocysteine hydrolase
    1.8e-58  197.1   0.3      4e-58  196.1   0.3    1.6  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
     0.0004   20.8   0.0    0.00094   19.6   0.0    1.6  1  NAD_binding_7  Putative NAD(P)-binding
     0.0018   17.6   0.3      0.038   13.3   0.3    2.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
  ------ inclusion threshold ------
      0.015   14.9   0.1      0.046   13.3   0.0    1.8  2  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
      0.036   13.8   0.1       0.11   12.1   0.0    1.8  2  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro
      0.042   14.1   0.0      0.089   13.1   0.0    1.6  1  TrkA_N         TrkA-N domain


Domain annotation for each model (and alignments):
>> AdoHcyase  S-adenosyl-L-homocysteine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.2   0.4     5e-75   1.3e-71       1     138 [.      15     158 ..      15     160 .. 0.95
   2 !  171.2   0.0   1.1e-53   2.8e-50     171     299 .]     158     468 ..     156     468 .. 0.97

  Alignments for each domain:
  == domain 1  score: 241.2 bits;  conditional E-value: 5e-75
                 --B-S-GGGHHHHHHHHHHHHCC-HHHHHHHHHCTTT-TTTT-EEEEES--SHHHHHHHHHHHHTT-EEEEE-SSTTT--HHHHHHHCCTTEEEE--TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase   1 dykvkdislaefGrkeielaekempglmalreeyaeekplkgariaGslhmtiqtavLietLvalGaevrWasCnifstqdeaaaaiaeagvpvfawkg 99 
                 dykv+di+la++Gr+ei+lae+emp+lm lr++y++++plkga+i G++hmtiqtavLietLvalGa+vrW+sCnifstqd+aaaa+a+ag+pvfawkg
  EGE27317.1  15 DYKVADIRLADYGRREIALAEAEMPALMGLRKRYQDQQPLKGAKILGCIHMTIQTAVLIETLVALGAQVRWTSCNIFSTQDHAAAAMAAAGIPVFAWKG 113
                 8************************************************************************************************** PP

                 --HHHHHHHHHHCHS......-SSTS-S-SEEEESSSHHHHHHHH CS
                 xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 100 etleeywwcieqalk......waedekepnlilDdGGDltllvhk 138
                 et+eey wc++q+++       + + +++nlilDdGGDlt+l+h+
  EGE27317.1 114 ETEEEYEWCLRQQIHdgsgsqNQGKLWDANLILDDGGDLTALIHN 158
                 **************977664333356799**************98 PP

  == domain 2  score: 171.2 bits;  conditional E-value: 1.1e-53
                 THHCCCHCC--EEEE-SHHHHHHHHHHHHTT---SEEEESTTSHHHCTTH................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
   AdoHcyase 171 kkytellkkikGvseetttGvhrLyelakkgkLlvpainvndsvtkskfD................................................. 220
                 + y+++lk i+G+seetttG+hrL ++ +kg+L+vpainvnd++tksk+D                                                 
  EGE27317.1 158 NDYPQMLKGIHGISEETTTGMHRLLDMLNKGTLKVPAINVNDAITKSKNDnkygcrhslndaikratdmllagrralvigygdvgkgsaqslrqegmiv 256
                 68************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
   AdoHcyase 221 ................................................................................................... 220
                                                                                                                    
  EGE27317.1 257 rvseidpicamqacmdgyelvspfingepsqgvnttllqdtdlivtttgnyhvcnsdmltalksgavvcnighfdteidtnfmrdnwrwvevkpqvhqv 355
                 *************************************************************************************************** PP

                 ..........................S-HHHHHHHHHHHHHHHHHHHHT.......TSSS-SS.....EEE--CHHHHHHHHHCCCCCT-------HHH CS
                 ..........................xxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 221 ..........................hpsfvmsasftnqvlaqielfkk.......ekkyekk.....vyvlpkklDekvarlhleklgaklteltkeq 281
                                           hps vm+ sf+nqvlaq+ l+++       +    kk     v+vlpkklDe+va+++++ +++ +t+lt++q
  EGE27317.1 356 yrsdderdyllvlsegrlvnlgnatgHPSRVMDGSFANQVLAQMYLYQQkfanlpvN----KKadslyVKVLPKKLDEEVAAAMVAGFNGVITKLTQTQ 450
                 ************************************************756644431....2255678******************************* PP

                 HHCCTSXTTSXXSXTTXX CS
                 xxxxxxxxxxxxxxxxxx RF
   AdoHcyase 282 aeyigveveGPfkpdhYr 299
                 a+yigv+ +GPfk++ Y+
  EGE27317.1 451 ADYIGVPIDGPFKAEDYK 468
                 ****************97 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.3   1.6e-61     4e-58       1     162 []     208     381 ..     208     381 .. 0.89

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 1.6e-61
                    HHHHHCCCCCHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--..........HH.HCTTT-SEEEE- CS
  AdoHcyase_NAD   1 nlygcreslvdgikratdvllaGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvt..........le.evvkkadivvtt 85 
                    n+ygcr+sl d+ikratd+llaG+ a+v+GyGdvGkG+a+sl++ G +v v+e+dPica+qa+m+G+e+v           ++ ++++++d++vtt
     EGE27317.1 208 NKYGCRHSLNDAIKRATDMLLAGRRALVIGYGDVGKGSAQSLRQEGMIVRVSEIDPICAMQACMDGYELVSpfingepsqgVNtTLLQDTDLIVTT 303
                    89******************************************************************975442222222233246789******* PP

                    SSSSSSB-HHHHCCS-TTEEEEE-SSTTTTBTHHHHHTTT-EEEEEETTEEEEE-TT..S-EEEEEGGGSBCHHHTS-- CS
  AdoHcyase_NAD  86 tGnkdiitlehlkkmkddaivcniGhfdseidvaaleanalkkeevkpqvdrvtlkd..gkkiillaeGrllnlgcatg 162
                    tGn  + ++++l+++k  a+vcniGhfd+eid++ ++ n  +++evkpqv++v  +d     +++l+eGrl+nlg+atg
     EGE27317.1 304 TGNYHVCNSDMLTALKSGAVVCNIGHFDTEIDTNFMRDN-WRWVEVKPQVHQVYRSDdeRDYLLVLSEGRLVNLGNATG 381
                    **********************************99988.99*********98776633446999************97 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.7e-07   0.00094       5      93 ..     228     329 ..     226     339 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.7e-07
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtv..vapev.keeleelvklaeeelekd.........legadlviaatddrel.neriaeaakarri 87 
                    l g++ lv+G G+v+   +++l ++g  v v  ++p    +++ + ++l +  ++++         l+++dl++++t + ++ n+ +  a k+  +
     EGE27317.1 228 LAGRRALVIGYGDVGKGSAQSLRQEGMIVRVseIDPICaMQACMDGYELVSPFINGEpsqgvnttlLQDTDLIVTTTGNYHVcNSDMLTALKSGAV 323
                    6799**********************999994433332333444555555544433334445556699***********87636668888898888 PP

  NAD_binding_7  88 lvnvad 93 
                    ++n+  
     EGE27317.1 324 VCNIGH 329
                    998754 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.3   1.5e-05     0.038      33     127 ..     227     328 ..     213     333 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                   -GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSH...........HHHHHH-SEEEE-S--STTTTTSBSHHHHHCST CS
  2-Hacid_dh_C  33 elsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsl...........eellaesDivslhlpltpetrhlinaeelakmk 118
                    l+g++  +iG+G++G+  a+ l++ gm v + +  +    ++   g+elvs             +ll+++D ++     t  ++h+ n+++l ++k
    EGE27317.1 227 LLAGRRALVIGYGDVGKGSAQSLRQEGMIVRVSEIDPICAMQACMDGYELVSPfingepsqgvnTTLLQDTDLIVT----TTGNYHVCNSDMLTALK 319
                   58999*******************9999777666665544433334444443212222222222678899998886....55699************ PP

                   TTEEEEESS CS
  2-Hacid_dh_C 119 kgailiNta 127
                   +ga++ N++
    EGE27317.1 320 SGAVVCNIG 328
                   ****99998 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.8e-05     0.046       2      48 ..     228     273 ..     227     290 .. 0.81
   2 ?   -2.3   0.0       1.1   2.8e+03      32      61 ..     422     451 ..     408     459 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeeg 48 
                 l g++  viGyG  G+  a+ lr+ g+ v v+  +    + +A  +g
  EGE27317.1 228 LAGRRALVIGYGDVGKGSAQSLRQEGMIVRVSEIDPI-CAMQACMDG 273
                 6788999********************9999865544.444555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.1
                 EEE-TT-HHHHHHHHTT-EEEEHHHHHHT- CS
        IlvN  32 vglregsksvkkAkeegfevltvaeavkka 61 
                 v  ++ ++ v+ A+ +gf+ + ++   ++a
  EGE27317.1 422 VLPKKLDEEVAAAMVAGFNGVITKLTQTQA 451
                 333333344444444555444444444444 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.5e-05      0.11      12      59 ..     210     256 ..     203     277 .. 0.87
   2 ?   -2.8   0.0       1.6   4.1e+03     146     158 ..     407     419 ..     393     447 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.5e-05
                    HHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEE CS
  ELFV_dehydrog  12 lGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvv 59 
                    +G+++ ++ ++k++    l+g+r  + G+G+vg+  a+ l + g+  v
     EGE27317.1 210 YGCRHSLNDAIKRATDMLLAGRRALVIGYGDVGKGSAQSLRQEGMI-V 256
                    89***********77779**********************887654.4 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.6
                    SSS-B-HHHHHHH CS
  ELFV_dehydrog 146 ANlpttqeAkeil 158
                    ANlp++++A++++
     EGE27317.1 407 ANLPVNKKADSLY 419
                    6666666666544 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.5e-05     0.089       2      73 ..     234     307 ..     233     323 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.5e-05
                 EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSE....EEES-TTSHHHHHHTTGGGESEEEE-SSSH CS
      TrkA_N   2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreegle....vvvgdatdeevLeeagiekadaviaatgdd 73 
                 ++iG+G+vG+  a+ L+++g+ v v + d+  + ++  +g+e    +++g+++  + +    +++ d+++++tg++
  EGE27317.1 234 LVIGYGDVGKGSAQSLRQEGMIVRVSEIDPICAMQACMDGYElvspFINGEPS--QGVNTTLLQDTDLIVTTTGNY 307
                 79****************77559999999988888877776633335555554..677777788888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3082.50
//
Query:       EGE27318.1  [L=1071]
Description: transferrin binding protein A TbpA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-36  126.8  25.2    2.1e-36  126.8  25.2    2.9  3  TonB_dep_Rec  TonB dependent receptor
    3.7e-21   75.7   2.7    8.6e-21   74.5   2.7    1.6  1  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.7      0.28   2.5e+03      68     104 ..     196     244 ..     147     322 .. 0.57
   2 !    5.8   4.3    0.0012        11      11     153 ..     367     546 ..     356     570 .. 0.57
   3 !  126.8  25.2   2.4e-40   2.1e-36      53     469 ..     560    1069 ..     515    1070 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.28
                   EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE..............EEEEEE CS
  TonB_dep_Rec  68 dnlswklslraglnYsstdgdsdynnsglgg..............grsynr 104
                   d+++w  +++  ++Y+s ++++++     g               g+ y  
    EGE27318.1 196 DGKDW--GVQTKTAYASKNNAWVNSVAAAGKagsfsgliiytdrrGQEYKA 244
                   33444..44444444422222222222222222233332222222222222 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0012
                   XEEEEEEEEEEEEEETTTTEEEEEEE..EEEEEEEEEECCC...EECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.... CS
  TonB_dep_Rec  11 ddnllanngdylrytdggdlgsalsr..gylgtnplyygdn...ysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgg.... 98 
                   ++++l+n g+ ++y +g++lg  +++  g +++++  y ++   + +++++rl l y yd    ++w  ++r+  +Y+  ++d + ++ ++++    
    EGE27318.1 367 EKSRLSNHGQANGYYQGNNLGERIRDaiGANSGYGINYAHGvfyDEKHQKDRLGLEYVYDSKGENKWFDDVRV--SYD--KQDITLRSQLTNThcst 459
                   56677888888888888999988888663333333344444455666779999*******9888899666665..577..33444444444444466 PP

                   ......................EEEEEEEECEEE.EEEEEEEEEEEEEEEE.....EE....EEEEEEEEEEE...EEEEECCBEESCCT CS
  TonB_dep_Rec  99 ......................grsynrdndyyg.lgnvlaaeldlngdlw.....fG....snladgldyrk...lsddgydaydplnp 153
                                         ++ y  +    +    v++ ++ l+ + +     +G    ++  +  dyr    +s++ +d++ p np
    EGE27318.1 460 yphidknctpdvnkpfsvkevdNNAYKEQH---NlIKAVFNKKMALGSTHHhinlqVGydkfNSSLSREDYRLathQSYQKLDYTPPSNP 546
                   777777788777766666643333333333...234455555555533322344556665554444445566422222233333333333 PP

  == domain 3  score: 126.8 bits;  conditional E-value: 2.4e-40
                    CCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECEEEEEEEEEEEEEE...EEEEE...........EE..... CS
  TonB_dep_Rec   53 tdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgggrsynrdndyyglgnvlaaeldl...ngdlw...........fG..... 128 
                    +      +gy +d+    +   + + + n++  +g ++yn+  +++  +y+   d+y+ +n ++    +      +            +G     
    EGE27318.1  560 KPICLDAYGYGHDHPQACNA--KNSTYQNFAIKKGIEQYNQKTNTDKIDYQAIIDQYDKQNPNSTLKPFekiK--QSlgqekynkideLGfkayk 650 
                    33444455666665444222..222233344555555555554444444444444444333333333333210..11122222222333333333 PP

                    EEEEEEEEEEEEEE.....EECCBEESCCTC..................CSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSSS.. CS
  TonB_dep_Rec  129 snladgldyrklsd.....dgydaydplnps..................gdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvfgkdlra 200 
                      +++ +d+++ ++     +g+d++  +n +                  +++++ ++ d+y + + dn+++++ ++l lG+Ryd+++ +++    
    EGE27318.1  651 DLRNEWADWTNKNSqqnanKGTDNIYEPNQAtvvkddkckysetnsyadCSTTRHISGDNYFIALKDNMTINKYVDLGLGARYDRIKHKSDVPLV 745 
                    3333335566422223333333333333333688888888888875555566666666666579999****7788**************999988 PP

                    .EEECCCEEEEEEEEEEEECETTEEE.EEEEEEEEE-STTCTTCEEEE......CCCCCEEEECS.................TT---EEEEEEEE CS
  TonB_dep_Rec  201 gafsrsgsafsPsvglryrptddlsl.rasysrgfraPslgelyaggs......ngaggalsngn.................pdLkPEtsknyel 271 
                    +  ++  +++s+++g++ +pt++l + +   s+gfr+Ps++e+y+         +         +                 ++LkPE+s n e+
    EGE27318.1  746 D--NSASNQLSWNFGVVVKPTNWLDIaY-RSSQGFRMPSFSEMYGERFgvtigkG---------TqhgckglyyicqqtvhqTKLKPEKSFNQEI 828 
                    5..4455999***************944.88**************6544444440.........12333333333333333388*********** PP

                    EEEEEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCS..........EEEEEEEEEEEEEEEEEEEEEEETTEE.........EEEEEEEEEEE CS
  TonB_dep_Rec  272 GlkldddrlnltlayFridiknfittdpdgpslgglgd..........fqyqNvgkarikGvElelsyrltpgWg.........lglsgggytYy 347 
                    G +l++  ++l ++yF ++++++i+  +    + + gd            + N  +a   G+ + ++      ++         +gl  + ++Y+
    EGE27318.1  829 GATLHNHLGSLEVSYFKNRYTDLIVGKSEEIRTLTQGDnagkqrgkgdLGFHNGQDADLTGINILGR------LDlnavnsrlpYGLYST-LAYN 916 
                    ******9999*******************99999443344444444433333333355555555222......33223222222333333.5564 PP

                    EECEC...EEECTTTTSSTT..EESEEEEEEEEEECSEEEEEEEE.....SEEEEEE......ECCSSEEEEECECCEE........EE--EEEE CS
  TonB_dep_Rec  348 dagdd...sdaddggnplpn..vPkhtanlgltYkfpaggWgagl.....llagarY......vavggrrygdaantfr........rvpgYtll 418 
                    + +++    +++  g+ + +  +++ ++++gl Y+ p+ +Wga++     +               +++  g+++            +  ++ +l
    EGE27318.1  917 KVDVKgktLNPTLAGTNILFdaIQPSRYVVGLGYDAPSQKWGANAifthsD-----AknpselL--ADKNLGNGN---IqtkqatkaKSTPWQTL 1001
                    44444455566666666444569***********778999**666543320.....13333321..222333333...123335666******** PP

                    EEEEEEEESSSEEEEEEEESTTETCSCEEESTT..................TTTCCEB--SEEEEEEEE CS
  TonB_dep_Rec  419 dlslgYklpknltlslgvnNLfdkryyassgyy..................glggypgpgRtfrlglry 469 
                    dls   ++++n+tl++gv+N+f+ +yy++                       +g+y +pgR++ l l++
    EGE27318.1 1002 DLSGYVNIKDNFTLRAGVYNVFN-TYYTTWEALrqtaegavnqhtglsqdkHYGRYAAPGRNYQLALEM 1069
                    ***766888**************.65555444489999999***********************99987 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   2.7   9.6e-25   8.6e-21      11     107 ..      75     181 ..      67     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 9.6e-25
                 EEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESC...........CCCSCTCGCSSBGGGEEEEEEEESSCHC CS
        Plug  11 vvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpian...........ggsgagdlssidpedierievlkGpasa 98 
                 v tae i+k ++ ++ d+ ++ pg+ v +++g+g +s++siRG++ nrv+vlvDG+++a+           +++++g ++ i+ e+++++e+ kG++s+
  EGE27318.1  75 VKTAETINKEQVLNIRDLTRYDPGIAV-VEQGRGASSGYSIRGMDKNRVAVLVDGINQAQhyalqgpvagkNYAAGGAINEIEYENVRSVEISKGANSS 172
                 5699***********************.*********************************************************************** PP

                 TTSSTGSSE CS
        Plug  99 lyGsdaigG 107
                  yGs+a+ G
  EGE27318.1 173 EYGSGALSG 181
                 ******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1071 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 6670.83
//
Query:       EGE27319.1  [L=105]
Description: hypothetical protein EA1_03405 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-13   51.0   0.1    1.3e-13   50.7   0.1    1.1  1  PepSY_2   Peptidase propeptide and YPEB domain
  ------ inclusion threshold ------
      0.077   13.5   0.0      0.088   13.3   0.0    1.2  1  RecX      RecX family
      0.097   13.4   0.1        1.4    9.7   0.1    2.0  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit


Domain annotation for each model (and alignments):
>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.1   2.2e-17   1.3e-13       2      83 ..      15     101 ..      13     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 2.2e-17
     PepSY_2   2 aalalalallaaaAlA...grrdtdspkadwlpreklvakleaqGykvkkievddggc...yEvegldkdGkkveikldpatgevvke 83 
                 aa+++ ++ ++++A+A    + + + + ++ ++r+k+ ++l+a+Gy+v +ievdd      +Eve ++k+G +++i+l + +++++ke
  EGE27319.1  15 AAVLFPAVGISTTAVAndrIKAQAYGDSNFAQNRQKAIQMLAARGYQVGDIEVDDFLGkpvFEVE-AYKNGAEYDIVLEYPSLKIIKE 101
                 57778889999*****888888999****************************77533678****.********************98 PP

>> RecX  RecX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05     0.088      82     112 ..      35      65 ..       2      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                 HHHHTTTS-HHHHHHHHHHHHHHTT--HHHH CS
        RecX  82 klkklkkeedekekqklvrfLarrGFssevi 112
                 k++++ +++  +++qk++++La rG++ + i
  EGE27319.1  35 KAQAYGDSNFAQNRQKAIQMLAARGYQVGDI 65 
                 44555667789***************98877 PP

>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00023       1.4       9      60 ..      23     100 ..      15     104 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00023
                 SHHHHHHHHHHHHHHHHHCT......................EEEEETTEE...GGGHHHHHHT-SEEEEEESSGG.C CS
     PTS_IIB   9 GmatSlmaaeklekaakelg......................ieaegeagv...eleaeeiaddaDlvllapqvrv.k 60 
                 G++t+++a+++++  a                          ie+    g    e+ea+++++++D+vl  p +++ k
  EGE27319.1  23 GISTTAVANDRIKAQAYGDSnfaqnrqkaiqmlaargyqvgdIEVDDFLGKpvfEVEAYKNGAEYDIVLEYPSLKIiK 100
                 555666655555544433334555555555555555588888999888888888999999999******999999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 795.94
//
Query:       EGE27320.1  [L=503]
Description: hypothetical protein EA1_03410 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-98  328.4  13.2    4.9e-98  328.1  13.2    1.1  1  DUF560        Protein of unknown function (DUF560)
     0.0024   18.3   0.8     0.0064   17.0   0.2    2.1  2  TPR_19        Tetratricopeptide repeat
     0.0029   18.2   1.7     0.0045   17.6   0.9    1.8  2  TPR_16        Tetratricopeptide repeat
     0.0051   17.5   1.0      0.029   15.2   0.2    2.6  3  TPR_14        Tetratricopeptide repeat
     0.0068   16.1   0.4      0.011   15.5   0.4    1.3  1  TPR_21        Tetratricopeptide repeat-like domain
  ------ inclusion threshold ------
      0.013   15.9   0.1      0.029   14.8   0.1    1.5  1  BTAD          Bacterial transcriptional activator domain
      0.017   15.5   1.6      0.035   14.4   0.6    2.1  2  TPR_20        Tetratricopeptide repeat
      0.046   14.0   0.0       0.12   12.7   0.0    1.6  1  Imm44         Immunity protein 44
      0.059   13.6   0.0       0.12   12.6   0.0    1.4  1  Flavodoxin_5  Flavodoxin domain
       0.11   13.2   0.4         13    6.6   0.0    2.9  2  TPR_6         Tetratricopeptide repeat
       0.14   12.3   7.2        2.1    8.7   0.4    3.6  4  TPR_2         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF560  Protein of unknown function (DUF560)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.1  13.2    3e-101   4.9e-98       1     286 []     222     503 .]     222     503 .] 1.00

  Alignments for each domain:
  == domain 1  score: 328.1 bits;  conditional E-value: 3e-101
      DUF560   1 WkfsvgasylkdkNinnasdkktvnfeksenikaskpekakGlsyslgaskkwnlkknhylelranvsGklYwdnkkyndlsvraslglgyknakqdvs 99 
                 W+++vg++  k++Nin++++++t+     ++++++kp +a +lsy+lga+kkw+l k+ y+ ++a+++Gk+++++kkynd+++r++++lg+++ak+d+s
  EGE27320.1 222 WTWQVGMNLAKEDNINQTPKNTTQ-----GQWTFDKPIDAITLSYQLGADKKWSLPKGAYVGANAQIYGKHHQNHKKYNDHWGRLGANLGFADAKKDLS 315
                 ************************.....********************************************************************** PP

      DUF560 100 llpFvekrfygnkryskasGvrlslsywlsekwqlstsleyekeryterkrldgnqklvsasllylpnakqyfflGldfsreda.rekadsydrkgvri 197
                 ++++ ekrfyg++ry++++G+r+s++y++++k+q+ +++++++ +++++ r d+n++l+s+sl+y+pna++y+ lG+df++e++ ++ +dsy+r+g+r+
  EGE27320.1 316 IETYGEKRFYGHERYTDTIGIRMSVDYRINPKFQSLNAIDISRLTNHRTPRADSNNTLYSTSLIYYPNATRYYLLGADFYDEKVpQDPSDSYQRRGIRT 414
                 *************************************************************************************************** PP

      DUF560 198 gwgqewekglstrlslsyakrdYkgkallllnikrkdkeysvslslwhrdlhllGitPkLtysykktkSNlpfysydkkevfvefektF 286
                 +wgqew +gls+r+++s++kr+Y+g++l++ ++ r+dk++++slslwhrd+h +GitP+Lt+s + +kSN+  ++y+k+++fvef++ F
  EGE27320.1 415 AWGQEWAGGLSSRAQISINKRHYQGANLTSGGQIRHDKQMQASLSLWHRDIHKWGITPRLTISTNINKSNDIKANYHKNQMFVEFSRIF 503
                 ***************************************************************************************99 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.2   1.9e+03      23      38 ..     132     147 ..     123     149 .. 0.72
   2 !   17.0   0.2   3.9e-06    0.0064       1      64 [.     146     208 ..     146     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
      TPR_19  23 knaearllLAeallal 38 
                 ++  ++l++A+al al
  EGE27320.1 132 HQNGILLGYANALAAL 147
                 3778899999999886 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 3.9e-06
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasL 64 
                 +l+ g+   A++ l+++++  p++  +r  LA+al+  +q ++A +  ++l +++   ++++++
  EGE27320.1 146 ALDKGNAKKAIDELRRIIAIMPEYNVVRFHLARALFMDKQNEAALDQFNKLHADNLP-EEVRQV 208
                 6899******************************************99999888776.666665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.9   2.8e-06    0.0045       1      65 [.     140     202 ..     140     205 .. 0.94
   2 ?   -3.2   0.0       8.7   1.4e+04      11      18 ..     210     217 ..     208     218 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.8e-06
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyraalraap 65 
                 +a a+aal+ g+  +A+  l++ ++     P+    +++l++a++  +  ++A+ ++ + ++++ p
  EGE27320.1 140 YANALAALDKGNAKKAIDELRRIIAIM---PEYNVVRFHLARALFMDKQNEAALdQFNKLHADNLP 202
                 799************************...************************888888888877 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.7
      TPR_16  11 gdyddAaa 18 
                 g+y++A++
  EGE27320.1 210 GQYRQALK 217
                 78888886 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   1.8e-05     0.029       4      43 ..     137     178 ..     135     179 .. 0.88
   2 ?    3.9   0.1     0.074   1.2e+02       5      31 ..     174     200 ..     171     211 .. 0.84
   3 ?   -2.2   0.0       6.8   1.1e+04      19      30 ..     207     218 ..     196     227 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
      TPR_14   4 llalaeallal..GdpdeAiallrralalaPddaeawlllaq 43 
                 ll +a al+al  G+ ++Ai+ lrr++a  P+  +++++la+
  EGE27320.1 137 LLGYANALAALdkGNAKKAIDELRRIIAIMPEYNVVRFHLAR 178
                 56788888776559***************************8 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.074
      TPR_14   5 lalaeallalGdpdeAiallrralala 31 
                   la+al+   + ++A++ ++++ a++
  EGE27320.1 174 FHLARALFMDKQNEAALDQFNKLHADN 200
                 579*******************98865 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 6.8
      TPR_14  19 eAiallrralal 30 
                 + +  +r+al++
  EGE27320.1 207 QVVGQYRQALKQ 218
                 556778888875 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   6.7e-06     0.011      81     161 ..     141     218 ..     106     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.7e-06
      TPR_21  81 llAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeeafaalvaelrGDilvaqgk 161
                 + A aa ++g++++A  +L+++++  ++    +++r  Lar l+ +k+ ++Al + ++ ++++   +v ++ G    a ++
  EGE27320.1 141 ANALAALDKGNAKKAIDELRRIIAIMPEY---NVVRFHLARALFMDKQNEAALDQFNKLHADNLPEEVRQVVGQYRQALKQ 218
                 5688999*******************988...89************************99999988888888876666555 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.8e-05     0.029      70     123 ..     144     197 ..     133     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                 HHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
        BTAD  70 eaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlr 123
                  a l  G a++a++el++++a  P     + +l rAl+   ++++AL ++++l 
  EGE27320.1 144 LAALDKGNAKKAIDELRRIIAIMPEYNVVRFHLARALFMDKQNEAALDQFNKLH 197
                 467999********************************************9885 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.036        59      24      53 ..     138     167 ..     117     172 .. 0.76
   2 ?   14.4   0.6   2.2e-05     0.035       5      78 ..     153     223 ..     149     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.036
      TPR_20  24 arldlAlallaagryeeAleqLleilkrdr 53 
                 + ++ Ala l +g+ ++A+++L +i++   
  EGE27320.1 138 LGYANALAALDKGNAKKAIDELRRIIAIMP 167
                 44677999999***********99998655 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.2e-05
      TPR_20   5 apelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplv 78 
                 ++ ++el++ +a  p+ +  r+ lA+al++ +++e+Al+q+ ++ + ++ +   ++r+ + ++ +al ++d ++
  EGE27320.1 153 KKAIDELRRIIAIMPEYNVVRFHLARALFMDKQNEAALDQFNKLHADNLPE---EVRQVVGQYRQALKQRDSWT 223
                 67899***********************************98887766655...67777777777776666665 PP

>> Imm44  Immunity protein 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.2e-05      0.12      31      77 ..     144     190 ..     131     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.2e-05
       Imm44  31 lldkdyGaevksiavipivvyilkkielkeftkerklykkkskeadl 77 
                 l   d+G   k i ++  ++ i++++++  f+  r l+  k++ea l
  EGE27320.1 144 LAALDKGNAKKAIDELRRIIAIMPEYNVVRFHLARALFMDKQNEAAL 190
                 5566889999*********************************9976 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.3e-05      0.12      54     105 ..     197     248 ..     194     260 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.3e-05
  Flavodoxin_5  54 yygkllpelakFvekhreaLstkpvalfsvsltarkpek.syvrkflkeklrw 105
                   +  +l++e+++ v ++r+aL+++ ++   v++   k+ + +++ k++  + +w
    EGE27320.1 197 HADNLPEEVRQVVGQYRQALKQRDSWTWQVGMNLAKEDNiNQTPKNTT-QGQW 248
                   88999***************************9887777555555543.3345 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.081   1.3e+02       9      28 ..     143     164 ..     137     168 .. 0.72
   2 ?    6.6   0.0    0.0082        13       3      27 ..     173     197 ..     171     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.081
                 HHHHH..HHHHHHHHHHHHHHH CS
       TPR_6   9 syrkl..gdtdkAlealerlik 28 
                 ++ +l  g++ kA++ l+r+i 
  EGE27320.1 143 ALAALdkGNAKKAIDELRRIIA 164
                 44444558999******99985 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerli 27 
                  ++la+++++ ++ ++Al+ +++l 
  EGE27320.1 173 RFHLARALFMDKQNEAALDQFNKLH 197
                 799*******77**********996 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.4    0.0013       2.1       6      33 ..     141     168 ..     140     169 .. 0.91
   2 ?    5.9   0.1      0.01        17       5      28 ..     174     197 ..     171     200 .. 0.91
   3 ?   -2.9   0.0       6.7   1.1e+04      16      22 ..     211     217 ..     210     218 .. 0.52
   4 ?   -2.0   0.0       3.4   5.6e+03       4      20 ..     424     440 ..     421     440 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0013
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                 + +la++ +g+ ++A++ +++ +++ P+
  EGE27320.1 141 ANALAALDKGNAKKAIDELRRIIAIMPE 168
                 66899*********************98 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.01
       TPR_2   5 ynlGlayyklgdyeeAleafekAl 28 
                 + l++a++  ++ e Al+ f+k  
  EGE27320.1 174 FHLARALFMDKQNEAALDQFNKLH 197
                 78*******************975 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6.7
       TPR_2  16 dyeeAle 22 
                 +y +Al+
  EGE27320.1 211 QYRQALK 217
                 5555554 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 3.4
       TPR_2   4 lynlGlayyklgdyeeA 20 
                 l  ++++ +++ +y+ A
  EGE27320.1 424 LSSRAQISINKRHYQGA 440
                 6789999999***9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3714.93
//
Query:       EGE27321.1  [L=706]
Description: transferrin binding protein B TbpB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-65  217.3  34.4    7.5e-37  126.8   7.0    3.9  4  TbpB_B_D     C-lobe and N-lobe beta barrels of Tf-binding pro
      3e-20   72.4   4.2    3.9e-19   68.9   1.2    2.7  2  TbpB_C       C-lobe handle domain of Tf-binding protein B
    2.9e-13   50.7  15.2      7e-08   33.3   1.0    3.2  4  TbpB_A       N-Lobe handle Tf-binding protein B
  ------ inclusion threshold ------
       0.16   11.7   0.2       0.25   11.0   0.2    1.3  1  Sigma54_DBD  Sigma-54, DNA binding domain


Domain annotation for each model (and alignments):
>> TbpB_B_D  C-lobe and N-lobe beta barrels of Tf-binding protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.077   3.5e+02      29      64 ..     121     164 ..      56     209 .. 0.77
   2 !  126.8   7.0   1.7e-40   7.5e-37       1     136 []     270     440 ..     270     440 .. 0.84
   3 ?   -2.1   0.6         1   4.6e+03      72     112 ..     496     535 ..     460     540 .. 0.66
   4 !  103.5   7.6   2.6e-33   1.1e-29       1     136 []     567     700 ..     567     700 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.077
                 T........E-SS-SSCSCEEEEEEETTTTEEEEEEEETT-SSB CS
    TbpB_B_D  29 d........eadkeaeagakaefdvdFgekkltGkLteengeek 64 
                 +        +++ ++ ++++  f+ d ++k l+G + + +++ k
  EGE27321.1 121 EkniitldgKKQVAEGKKSPLPFSLDVENKLLDGYIAKMDKADK 164
                 1345555434455555566889*************988444432 PP

  == domain 2  score: 126.8 bits;  conditional E-value: 1.7e-40
                 CESSSEEEEEEEEEEEEEES.......TTSEEEBTT............................E-SS-SSCSCEEEEEEETTTTEEEEEEEE...... CS
    TbpB_B_D   1 lPksgkakYkGtwlgyidak.......enkageesd............................eadkeaeagakaefdvdFgekkltGkLte...... 58 
                 lP+++ +kYkG+w++++d+        e                                     ++ ++e+g+++ef+v+F+ekkltG L +      
  EGE27321.1 270 LPTQDAVKYKGHWDFMTDVAnkgnrfsE-------VkgtrqagwwygasskdeynrlltdeknkPDGYNGEYGHSSEFTVNFKEKKLTGGLFSnlqdsh 361
                 7*****************9955555550.......144555556665556666667777777678888999999*****************99999999 PP

                 TT-SSB--SEEEEEEEETTEEEEEEEETTT-TTSSTT-S..-S-CEEEEEEEESTTT-EEEEEE.E-TTCEEEEEEEEEE CS
    TbpB_B_D  59 engeekkkkvdieakIkgnrFtgkakakdkkkekkenss..kkkdakveGgFYGpnAeELgGkfsesedkklggvFgAkk 136
                 +++ +k+k++di+a+I+gnrF+g+a a+dk+k++++++   ++++ ++eGgFYGp++eEL+Gkf  ++d+kl+gvFgAk+
  EGE27321.1 362 KQKVTKTKRYDIDANIHGNRFRGSAIASDKEKDSETKHPftSDAKDRLEGGFYGPKGEELAGKF-LTDDNKLFGVFGAKQ 440
                 888899999******************9988776655547799999******************.*************97 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1
                 EEEETTEEEEEEEETTT-TTSSTT-S-S-CEEEEEEEESTT CS
    TbpB_B_D  72 akIkgnrFtgkakakdkkkekkensskkkdakveGgFYGpn 112
                  + + n+Ft ++ ++ ++ +  e+   +++++v+   YG n
  EGE27321.1 496 TDATKNEFTEDKPKSATN-KAGETLMVNDKVSVKTYGYGRN 535
                 555677777766665433.3333344888888888888876 PP

  == domain 4  score: 103.5 bits;  conditional E-value: 2.6e-33
                 CESSSEEEEEEEEEEEEEESTTSEEEBTTE-SS-SSCSCEEEEEEETTTTEEEEEEEETT-SSB--SEEEEEEEETTEEEEEEEETTT-TTSSTT-S.. CS
    TbpB_B_D   1 lPksgkakYkGtwlgyidakenkageesdeadkeaeagakaefdvdFgekkltGkLteengeekkkkvdieakIkgnrFtgkakakdkkkekkenss.. 97 
                 +P++gkakY G+w+gyi+ +++ +        + +ea++ a+fd+dF++k+++GkLt++ ++  +++++i+++I+gn++tgka++++++    +  s  
  EGE27321.1 567 VPTEGKAKYLGNWVGYITGTGTGK--------SFNEAQDIADFDIDFKNKTVNGKLTTKGRT--DPVFNITGEISGNGWTGKASTAKADAGGYNIDSng 655
                 69****************994433........45556679****************855544..59******************998876665555567 PP

                 .....-S-CEEEEEEEESTTT-EEEEEE..E-TTCEEEEEEEEEE CS
    TbpB_B_D  98 .....kkkdakveGgFYGpnAeELgGkf.sesedkklggvFgAkk 136
                       ++da+v+GgFYGpnA E+gG+f ++++d+k+++vFg+k+
  EGE27321.1 656 tnksiVIRDADVTGGFYGPNATEMGGSFtHNTNDSKASVVFGTKR 700
                 788899**********************8999999********98 PP

>> TbpB_C  C-lobe handle domain of Tf-binding protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.018        80      57      84 ..     202     239 ..     146     266 .. 0.70
   2 !   68.9   1.2   8.6e-23   3.9e-19       8      99 .]     463     559 ..     457     559 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.018
                 -..........---EEEEEE-TT-SSEEEEEEEE---- CS
      TbpB_C  57 k..........kkklkvevccsnLeYlkfGklskeesk 84 
                            ++    ++   +L+Y+ +G +  ++ +
  EGE27321.1 202 VmtslenkifhSNDGTTKATTRDLQYVDYGYYLANDAN 239
                 033333355556677788999*********99877554 PP

  == domain 2  score: 68.9 bits;  conditional E-value: 8.6e-23
                 EEET.T-SSEEE-B--S-TTEEEETTEEEES-------EEEEEE-------.........---EEEEE..E-TT-SSEEEEEEEE----------EEEE CS
      TbpB_C   8 kldl.kklekkeldnFgnaakLvidgkeipLlpedttaktefiktvekekk.........kkklkvev..ccsnLeYlkfGklskeeskdeeeedslFl 94 
                 + ++ + ++kk+ldnFgna+kLv+++++i+L+++ +++k+ef++++ k+ +         ++k++v++  +  n+eYlkfG+ls   s+      s+Fl
  EGE27321.1 463 DANTfTPFTKKQLDNFGNAKKLVLGSTVINLVST-DATKNEFTEDKPKSATnkagetlmvNDKVSVKTygYGRNFEYLKFGELSVGGSH------SVFL 554
                 4444599***************************.8899999988877777799******8888887722579***************9......8*** PP

                 EEEB- CS
      TbpB_C  95 qGerT 99 
                 qGerT
  EGE27321.1 555 QGERT 559
                 ****9 PP

>> TbpB_A  N-Lobe handle Tf-binding protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.6   1.1e-09   4.8e-06       1      63 [.      78     135 ..      78     165 .. 0.84
   2 !   33.3   1.0   1.6e-11     7e-08      34     135 .]     167     267 ..     154     267 .. 0.75
   3 ?   -2.5   0.5       1.8     8e+03      53      58 ..     355     360 ..     310     399 .. 0.51
   4 ?   -3.7   0.0         4   1.8e+04      41      65 ..     500     524 ..     487     542 .. 0.49

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.1e-09
      TbpB_A   1 kyqDeptqkrekeelaalkqPalGfamkiprrniapkdeegeeevplseediekvedellkip 63 
                 kyqD+pt k eke+++ +++Pa+G+ m++   n+++++       pl e++i +++++++ ++
  EGE27321.1  78 KYQDVPTDKNEKEQVSPIQEPAMGYGMALSKINLHNRQD-----TPLDEKNIITLDGKKQVAE 135
                 79*********************************9994.....5888888877777554444 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 1.6e-11
      TbpB_A  34 iapkdeegeeevplseedi.ekvedellkipkekevkkksdekesfvhshdgskksrkrdyqYVrsGyvlkkegskekkdkkekklarsgingYvfYkG 131
                 i+++ e++++ +plse ++ ek++++  k  + +  +   + +++++hs+dg+ k+ +rd+qYV  Gy+l++  +  ++++ + kl  sg+ g vfY+G
  EGE27321.1 167 IRRRIESENKAKPLSEAELaEKIKEAVRKSYEFQ--QVMTSLENKIFHSNDGTTKATTRDLQYVDYGYYLANDANYLTVKTDKPKLWNSGPVGGVFYNG 263
                 3444455566778887777344444333333333..366667779*************************88888888888888888************ PP

      TbpB_A 132 tnpa 135
                 + +a
  EGE27321.1 264 STTA 267
                 9876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.8
      TbpB_A  53 ekvede 58 
                 ++++d+
  EGE27321.1 355 SNLQDS 360
                 222222 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 4
      TbpB_A  41 geeevplseediekvedellkipke 65 
                 ++e  + ++++ +++ +e+l ++++
  EGE27321.1 500 KNEFTEDKPKSATNKAGETLMVNDK 524
                 3333333334444444443333333 PP

>> Sigma54_DBD  Sigma-54, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   5.7e-05      0.25     104     134 ..     162     192 ..     143     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.7e-05
                  HCCTHHHHHHCTS-TTSS--CCHHHHHHHCT CS
  Sigma54_DBD 104 aikalikklieaEdkkkplSDdkivellkek 134
                  a k++i++ ie+E+k+kplS+++++e++ke+
   EGE27321.1 162 ADKNAIRRRIESENKAKPLSEAELAEKIKEA 192
                  558899**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5128.54
//
Query:       EGE27322.1  [L=547]
Description: mechanosensitive ion channel family protein MscS [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-39  135.8   0.7    1.4e-39  135.8   0.7    1.8  2  MS_channel  Mechanosensitive ion channel
  ------ inclusion threshold ------
       0.37   11.0   0.1       0.37   11.0   0.1    3.3  3  HemY_N      HemY protein N-terminus
        9.3    6.7  15.6      0.055   13.8   4.2    2.7  3  MgtE        Divalent cation transporter


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.53   3.2e+03       3      25 ..       5      27 ..       3      32 .. 0.79
   2 !  135.8   0.7   2.3e-43   1.4e-39       2     205 ..     319     520 ..     318     521 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.53
                HHHHHHHHHHHHHHHHTTT--SC CS
  MS_channel  3 ilkiliivvgilivlsllgvnvs 25
                ++ki++++ g+++vl ++   +s
  EGE27322.1  5 VKKIGMVLSGVVMVLLMIITTPS 27
                78999999999999998876655 PP

  == domain 2  score: 135.8 bits;  conditional E-value: 2.3e-43
                 .HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHH CS
  MS_channel   2 kilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnss 100
                 k+ k l+i++++++++ +lg+++++ +a+lG++glal+++++++++nl++++++++++p+ +GD+ ++g+ eGtV+dig+r+t+irt +++ivt+Pn +
  EGE27322.1 319 KVAKALMIILAVILIFGNLGFDLTTGIAALGVGGLALAFGAQKTLENLIGSVVVVADRPVYVGDYCKFGTYEGTVIDIGIRSTRIRTLNRTIVTVPNGE 417
                 78899********************************************************************************************** PP

                 HHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHH CS
  MS_channel 101 lvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkil 199
                 +++ +ieN++  ++   +  +  ++ ++d  ++e+++ +l+e+l  ++ + + +  +v+++++ ++   +e r+++     ++ ++ qs ++l+i k+l
  EGE27322.1 418 FSSLQIENFTA-RDMFYFLHDLFIKRTADLAEIERMITNLQEFLAAHRLTNH-EWNQVWIKQLRQECYVIEMRAYIDADGAQDFYAKQSVLILEILKFL 514
                 ***********.***********************************97775.8999****************************************** PP

                 HHHT-- CS
  MS_channel 200 eeegie 205
                 e+ +ie
  EGE27322.1 515 ESYHIE 520
                 **9997 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       0.3   1.8e+03      55      80 ..      50      75 ..       8      99 .. 0.54
   2 ?    1.6   5.2     0.052   3.1e+02      13      42 ..     191     220 ..     185     236 .. 0.61
   3 ?   11.0   0.1   6.2e-05      0.37      21      97 ..     241     317 ..     227     326 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.3
      HemY_N 55 rerkarealseGlialaeGdfarAek 80
                 ++  r a++  l a+a++d++ A +
  EGE27322.1 50 GRETPRGAVQGLLRAIAAEDYELAAN 75
                33444444444456677777777765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.052
      HemY_N  13 etslvvavlllvllfvllylllrllrlllr 42 
                 +t  ++ + +lvll+ +lyl++ l  ++l 
  EGE27322.1 191 QTKYWLELSALVLLVTVLYLAINLAVWILY 220
                 445555555555555555555555555443 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 6.2e-05
      HemY_N  21 lllvllfvllylllrllrlllrlparvrrwrrrrrerkarealseGlialaeGdfarAekaaakaaklseapllayl 97 
                 +++ l +v+l l+l ++   +++p  +r+ ++r +   a  a+   ++ l+ G f+rAe +  k  + ++ + l++l
  EGE27322.1 241 VIMPLSLVVLSLILPIIMISVGVPLTLRSSFGRIKDIVAWGATAWLMLRLLDGIFRRAEANSLKRGRPEQVSILNLL 317
                 5566789999*************************************************999999999888888877 PP

>> MgtE  Divalent cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.85   5.1e+03      39      47 ..      15      23 ..       4      37 .. 0.46
   2 ?   13.8   4.2   9.3e-06     0.055      16      96 ..     174     268 ..     159     272 .. 0.83
   3 ?   -0.2   0.3       0.2   1.2e+03      34      57 ..     318     341 ..     301     374 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.85
                HHHHHHHHH CS
        MgtE 39 elrvvlllg 47
                 ++v+l+++
  EGE27322.1 15 VVMVLLMII 23
                112222222 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 9.3e-06
                 HHHHHHHHHTTSS-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-...............CTSHHHHHHHHHHHHHHHHHH..HHHHHHHHH CS
        MgtE  16 asristalhlgelekklkkvllkelrvvlllgvilgllifllalllgw..............slllalvvglalvlvllaaallilgvllplllw 96 
                 a ++s  l l++ +++++  ++ el +++ll ++l l+i l +++l+w               ++ ++++ l+lv++ l+  ++++ v +pl l+
  EGE27322.1 174 AQTLSERLGLSDDTTHAQTKYWLELSALVLLVTVLYLAINLAVWILYWvskglyttltkkpfRIMPSVIMPLSLVVLSLILPIIMISVGVPLTLR 268
                 455555555554333368889999************************99999999999999999999999999999999999999999999886 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
        MgtE  34 kvllkelrvvlllgvilgllifll 57 
                 + ++k l+++l +++i g l f l
  EGE27322.1 318 RKVAKALMIILAVILIFGNLGFDL 341
                 445555555555555555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4229.63
//
Query:       EGE27323.1  [L=268]
Description: TatD family hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-62  210.5   0.3    3.1e-62  210.3   0.3    1.0  1  TatD_DNase  TatD related DNase


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.3   1.7e-66   3.1e-62       1     253 [.       3     256 ..       3     258 .. 0.87

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 1.7e-66
                 EEEEE-TTS.CCC...TTTHHHHHHHHHHTTEEEE..EEE-SSGG.GHHHHHHHHTT..TTTEEEEE---GGGGGCC.CCHH..HHHHHHHHCCCTSEE CS
  TatD_DNase   1 iDaHcHlds.kef...eedreeileraeeagvaav..vvvgtssk.dskavlelakk.ypnkvyavlGiHPnevdeasedll..eelkelanvkhskvv 89 
                 +D+H+Hl+  k +   ++ +e+ l+++++agv +   +++++s++ d+ a++e+++   p+ + +++G+HP++ + ++   +  +el    + +h+kv 
  EGE27323.1   3 TDSHAHLTYlK-LdhyDNRPENLLKAMYQAGVRRTmaIMCQLSEYdDIHAWVEMSADtMPD-IGMSVGVHPCQDE-HTLAAIspDELL---KRDHEKVW 95 
                 5*******954.333245566666********98734566777777888888888884665.*********5544.344444344443...559***** PP

                 EEEEEEEET-CCCCCGHHHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCGGCCSEEEETT--S-HHHHHHHHHTTEEEEE-GGGGTTTTHHH CS
  TatD_DNase  90 aiGeiGLDyysreestkeaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaaeakakvvlHsfsgsaeeakkflklgyyislsglltfknakel 188
                 a Ge+GLDy + ++++ +aq++ F +++++Ak  k+p+++H+r+a++d+le+l +++ +   +++H+f++++  ak++l++g+yis+sg+l f+++++l
  EGE27323.1  96 AFGETGLDY-YWDKDKSSAQKHSFAAHIDAAKTAKKPIIVHTRSAYQDTLEVLAAERCE--HGIIHCFTEDYAFAKRALDMGLYISFSGILSFNKSQDL 191
                 *********.5667999**************************************9743..48************************************ PP

                 HHHHHHS-GGGEEE---TTSSEECCCTTSE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHH CS
  TatD_DNase 189 relvkavpldrlLiETDaPyltpkpyrgkrnepanvayvveklaelkaltleelaeitaeNakrl 253
                 re+++++pldr+LiETD+Pyl+p+p+rg+ nep +v+yv+e+la++ + + ee+ +it++N+ +l
  EGE27323.1 192 REVAAKLPLDRVLIETDSPYLAPVPKRGRDNEPTFVPYVAEALAKIYQKSAEEIGHITSHNFITL 256
                 *************************************************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2145.23
//
Query:       EGE27324.1  [L=321]
Description: tRNA-dihydrouridine synthase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-75  253.4   0.0    3.2e-75  253.1   0.0    1.0  1  Dus           Dihydrouridine synthase (Dus)
     0.0065   16.0   0.0      0.018   14.5   0.0    1.7  2  His_biosynth  Histidine biosynthesis protein
  ------ inclusion threshold ------
       0.14   11.4   0.0       0.24   10.6   0.0    1.3  1  MKT1_C        Temperature dependent protein affecting M2 dsRN


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.1   0.0   5.4e-79   3.2e-75       2     289 ..       8     298 ..       7     311 .. 0.96

  Alignments for each domain:
  == domain 1  score: 253.1 bits;  conditional E-value: 5.4e-79
                 E---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGTSCEEEEEE-S-HHHHHHHHHHHHH..TT-SCEEEEESSTTEEETTEE CS
         Dus   2 laPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeeetplavQlggsdpallaeaAklvad..lgadeIdlNvGCPskkvtrgg 98 
                 laPm ++t++ fR + r f+ +  ++tem+++ ai++ +++ ++++   e++  +++Qlggs+p+++a+a+++ ++   g+ e ++NvGCPs++v++++
  EGE27324.1   8 LAPMIDYTTMDFRAFARLFNPNIHLYTEMISTSAILKGDAKHHLRCHPTESP--VVLQLGGSNPDEMAKAVRVTEAlgFGYCEYNINVGCPSDRVQHNK 104
                 9*************************************99999999888877..*********************9777899***************** PP

                 EGGGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESS..TTTC.HHHHHHHHHHCT-SEEEEESS.......ECCCTT-C.G--CHHHHHHHHH-S.S-E CS
         Dus  99 aGaaLlrkpdlvaqivkavvkaveiPvtvkirigid..deeenalelakiveaaGaqaltvHgR.......traqnyeg.tadweaIkevkqavs.ipv 186
                 +Ga+L+++p++va++v+a+++ ++ P+tvk+rigid  d++e++ +++++v +aG++ ++ H+R       +++qn+e+ ++++e+++ +kq+++ +++
  EGE27324.1 105 IGACLMAEPQVVADMVRAMKNETDKPITVKHRIGIDdcDSYEFMRDFVQTVAEAGCTHFITHARiawlqglSPKQNREIpPLRYEEVYRLKQDFPdLTI 203
                 ************************************9************************************************************** PP

                 EEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHHHHHHHHHHHTTTTCHH CS
         Dus 187 iaNGdIkdaedaqaileetGadgvmigrgalgnPwlfaestavktgeaepapplaeeaeiveehlkkleeelgedkglrkirkhlawylkglkkaaelr 285
                  +NG+I +++d++  l++  +dgvmigr+ + nP+l+ae  ++ +g++ p+       +i+e+ +++l+++  e++ l   ++h+  +++g+++a+ +r
  EGE27324.1 204 EINGGISHLDDIKTQLAK--VDGVMIGRAFYHNPYLMAEC-HLLWGSQPPSHR-----QIFENLISYLKKRADEGVNLAVLTRHYLGLFQGMAGARRWR 294
                 ******************..*****************965.899999998888.....9**************************************** PP

                 HHHH CS
         Dus 286 rele 289
                 + l+
  EGE27324.1 295 QDLS 298
                 9886 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.38   2.3e+03      61      78 ..     116     133 ..     102     165 .. 0.65
   2 !   14.5   0.0     3e-06     0.018      74     110 ..     201     236 ..     185     249 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.38
                   HHHHHHHHHHH-SSEEEE CS
  His_biosynth  61 nldlveeiaeevfipvqv 78 
                     d+v+++ +e++ p++v
    EGE27324.1 116 VADMVRAMKNETDKPITV 133
                   456666666666666665 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3e-06
                   SEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-TH CS
  His_biosynth  74 ipvqvGGGIrsledveelleagadkviigtaavknpe 110
                   +++++ GGI++l+d+++ l   +d v+ig a  +np 
    EGE27324.1 201 LTIEINGGISHLDDIKTQLAK-VDGVMIGRAFYHNPY 236
                   445555555555555555544.555555555555555 PP

>> MKT1_C  Temperature dependent protein affecting M2 dsRNA replication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.1e-05      0.24      96     134 ..      12      50 ..       8      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.1e-05
      MKT1_C  96 lsrdllaFrslvkllrrslreliEavlvslllsgeanre 134
                 ++  ++ Fr +++l++ +++  +E++++s +l+g+a+ +
  EGE27324.1  12 IDYTTMDFRAFARLFNPNIHLYTEMISTSAILKGDAKHH 50 
                 7788999****************************9973 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2319.79
//
Query:       EGE27325.1  [L=259]
Description: putative CAAX family protease [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-15   56.2   3.4    3.3e-15   56.2   3.4    2.8  2  CPBP      CPBP intramembrane metalloprotease
  ------ inclusion threshold ------
       0.34   10.8   0.1       0.34   10.8   0.1    1.9  2  Caleosin  Caleosin related protein


Domain annotation for each model (and alignments):
>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.3  10.3         2   1.8e+04      22      55 ..      71     106 ..       9     133 .. 0.54
   2 !   56.2   3.4   3.7e-19   3.3e-15       5      91 ..     154     250 ..     150     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: -6.3 bits;  conditional E-value: 2
                 HHTTCHHHHHHHH...S-.HHHHHHHHHHHHHCSGGG CS
        CPBP  22 lfRglllqllqer..gss.tlailissilFglaHlpn 55 
                 ++  +++q l+ +  g+   ++ili    Fg +H++n
  EGE27325.1  71 VWIIVIWQYLRIKtmGHTtKTTILIWQCYFG-FHAMN 106
                 3333444444444322222333333333333.34444 PP

  == domain 2  score: 56.2 bits;  conditional E-value: 3.7e-19
                 HHHHHHHHHHHHHHHHHHHTTCHHHH.........HHHH.S-HHHHHHHHHHHHHCSGGGHHH.HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        CPBP   5 llvfllalllapllEEllfRglllql.........lqergsstlailissilFglaHlpngps.vllaalaGlvlgylylktgsllaaillHallnl 91 
                 +l++ll+l++ap++EEl++Rgl+++l          qer+ ++++ l+ss +F+++H+ ++++ ++++a ++l+l+y +l t+s++a++llH+++n 
  EGE27325.1 154 WLFALLVLICAPIYEELICRGLFWRLgedifspffTQERHTNIAVSLLSSGIFSFLHFQYNYIdLVMMATLSLILCYTRLSTQSIFAPMLLHSINNS 250
                 778899******************997777777755555444******************8889*******************************97 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3      0.84   7.5e+03     129     145 ..      24      40 ..      20      43 .. 0.81
   2 ?   10.8   0.1   3.8e-05      0.34      18      71 ..      90     145 ..      86     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.84
    Caleosin 129 fgwlaallewlalylll 145
                 ++++a+++ ++ ++lll
  EGE27325.1  24 IAMIASMFVLQYTWLLL 40 
                 67889999999999987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 3.8e-05
    Caleosin  18 dGiiypldtyrgfralgfnvllsllaalvihlalsyp..tlpswlpdplfriyvkn 71 
                 + +i  +++y gf+a++ ++++ +la+l++ + ls    +  s + +p+ +i vk+
  EGE27325.1  90 KTTILIWQCYFGFHAMNSKAFFKALAVLLVGIILSSGfvAILSDWLKPMPSIDVKS 145
                 56899*************************99999752244466667777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1131  (0.0630822); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 1923.21
//
Query:       EGE27326.1  [L=301]
Description: putative hydrolase alpha/beta family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-07   30.4   0.1    4.5e-07   29.8   0.1    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.6e-06   28.9   0.0    2.1e-06   28.5   0.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    3.4e-05   23.2   0.0      5e-05   22.7   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0026   17.6   0.9      0.012   15.4   0.9    1.9  1  Ser_hydrolase  Serine hydrolase
     0.0039   17.0   0.0     0.0049   16.7   0.0    1.2  1  Abhydrolase_2  Phospholipase/Carboxylesterase
  ------ inclusion threshold ------
      0.046   13.6   0.0      0.078   12.8   0.0    1.4  1  Lipase_3       Lipase (class 3)
      0.058   13.0   0.0       0.08   12.6   0.0    1.3  1  Esterase       Putative esterase
       0.07   12.7   0.0      0.096   12.2   0.0    1.2  1  LIDHydrolase   Lipid-droplet associated hydrolase
      0.072   11.6   0.0        0.1   11.1   0.0    1.2  1  PAF-AH_p_II    Platelet-activating factor acetylhydrolase, is
       0.19   10.7   0.6       0.26   10.2   0.3    1.4  2  Peptidase_M66  Peptidase M66


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   2.5e-10   4.5e-07      56     235 ..      71     261 ..      40     277 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.5e-10
                    HHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHC.CSCH CS
  Abhydrolase_1  56 tasvaddldrildalgddkltlvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagpllad.elaa 150
                    t  v d++d ++  +g+  l+ vGhS+G m+ l+ +  +p++++  vll++     sl  a    ++ + +++d+y+    + +  ++ +  +++ 
     EGE27326.1  71 THQVGDSIDDACREHGVSTLVAVGHSLGAMTTLQTLIANPKPISQAVLLDP-----SLLTARSAFLYHVTKTMDKYIGRIPKFQYHLIDQLtPAQK 161
                    4568899********************************************.....********************99888877777777525667 PP

                    HHHHHHHHHHHHH...........HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC..THHHHS..EEEEEEETTCSSSCHHHHH CS
  Abhydrolase_1 151 leqrhrlvdalkf...........pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlre..lknvla..ptlvisgtsDplvppkale 231
                    + +r ++ d+ ++           ++++ r  ++++ +   +++ +++ ++ ++   sa +  +     lk ++   p+ +i+g++   +++++++
     EGE27326.1 162 SKYRKDVFDSRDDayqalrhkalfASFDERSFQNYIKYGFKPTADGKYTLSIPKSVESAIFRTMPSLywLKSISPakPVALIAGQDSDFTKIGSYD 257
                    777777666655588888888888777777777777777777777766666666666666655544466777777777777777777777766666 PP

                    HHHH CS
  Abhydrolase_1 232 dlaq 235
                    +  +
     EGE27326.1 258 NAHK 261
                    6555 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.2e-09   2.1e-06      18     219 ..      38     286 ..      25     287 .. 0.49

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.2e-09
                    HHHHHHCCTCEEEEE--TTSTS-GGCS--HHHC.HHH.HHHHCCTT..TTSE...EEEEETCHHHHHHHHHHCC........EE..EEES-..--- CS
  Abhydrolase_6  18 pLaallaagvhvlapDlpGhGrsdpppldledl.adl.aalldelaagggpv...vlvGHSlGGalalaaapla......lvvg..vlldppptal 100
                     ++ +la+ ++++++   G+ ++ p +++++   +++ + + d+ +   + v   v+vGHSlG++  l+    +      +  +  vlldp   +l
     EGE27326.1  38 VMLDRLARYFTIVSINELGTHPNYPVDHHWQSMtHQVgDSIDDACR--EHGVstlVAVGHSLGAMTTLQ---TLianpkpI--SqaVLLDP---SL 123
                    5566666666556666666644577888886631222322222222..3334556**********8888...333346533..346*****...44 PP

                    -TTTS----TTHHHHHH...TT-CCCCHCCH.........S-HSCCCCHHHCCCCHCHCCCGHH........................HHCCHHCH CS
  Abhydrolase_6 101 pagllaaalelllalla...llrllawlsre.........plprlfladedadaawrarlarla........................allaglgl 160
                     ++  a++  + ++  +   + ++++++  +         ++ + f + +d   a++a    ++                         +l+ +  
     EGE27326.1 124 LTARSAFLYHVTKTMDKyigRIPKFQYHLIDqltpaqkskYRKDVFDSRDD---AYQALRHKALfasfdersfqnyikygfkptadgkYTLSIPKS 216
                    444433333333322221113333444432223322333222222222222...122221111122222333333333333322222222223334 PP

                    TTCCHHTT-TTGC............EEECTT-C...HHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 161 lpaaawadlpvpl............lvlggeDp...lvprllerllaqagarlpvvlpgaGHlphleepdevae 219
                       a ++++p+++            l+ +g+D     +   + + ++  ++++pv++  ++H++ le p+++a+
     EGE27326.1 217 VESAIFRTMPSLYwlksispakpvaLI-AGQDSdftKIGS-Y-DNAH-KKFDIPVYYVLGSHMFPLEYPEQTAD 286
                    447788888888877777777776555.788886664443.3.4444.7888898888899*66666****997 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.8e-08     5e-05      54     139 ..      66     150 ..      56     187 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.8e-08
  Hydrolase_4  54 sfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklk.appllklllkllgkllpklqv 139
                  ++++++  +   ++ +++eh+ + l+ +GhS+G++++l+ l  +p+ ++ ++l  P l  + +   +  + k + k +g++ pk+q 
   EGE27326.1  66 HWQSMTHQVGDSIDDACREHGVSTLVAVGHSLGAMTTLQTLIANPKPISQAVLLDPSLLTARS-AfLYHVTKTMDKYIGRI-PKFQY 150
                  5777777777789********************************************987765.44667777777777664.66655 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.9   6.8e-06     0.012      56     133 ..      89     182 ..      60     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.8e-06
                    TEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGG.................S..TT.GGGCGCTTS-SSHHCCHCEEEEETTBTTC-HHHH CS
  Ser_hydrolase  56 kvvlvAHSlgclavlhaaelqlakkvagalLVapadve.................eeaaklaelaefaplpreklpfpslvvaSenDpyvsfeea 133
                     +v v HSlg++++l+ +  + +k++ +a+L  p   +                  + +k +     +  p++k ++++ v+ S++D y +  + 
     EGE27326.1  89 TLVAVGHSLGAMTTLQTL-IANPKPISQAVLLDPSLLTarsaflyhvtktmdkyiGRIPKFQYHLIDQLTPAQKSKYRKDVFDSRDDAYQALRHK 182
                    367799************.***************9988888888888888877765555555556667778888888889999999988776655 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.7e-06    0.0049      35     177 ..      15     164 ..       5     199 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.7e-06
                    H.TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS-B-HHHHHHHHHHHHHHHHHHHHTT...--GGGEEEEEETHHHHHHHHHHHT-S CS
  Abhydrolase_2  35 kteaalpnikfifphgpelpvtlnggmrmpaWfdlvglspekkedeagikksaekleelidaelkkg...ipssriiigGFSqGaalalylaltlp 127
                    +++   p  +f+  +g+  p ++ +  r    f +v++++   + +  +++  +++   ++  ++        s  + +G S Ga+ +l++ ++ p
     EGE27326.1  15 SIKTGKPLLHFVHANGIPTPTYQVMLDRLARYFTIVSINELGTHPNYPVDHHWQSMTHQVGDSIDDAcreHGVSTLVAVGHSLGAMTTLQTLIANP 110
                    5566677789*******************************999999999999999999999999997667778999******************* PP

                    S--SEEEEES.---TTGGGTTTTS-GGG....GG-EEEEEEETT-SSS-HHHHHH CS
  Abhydrolase_2 128 kklggivafs.galplsqklessatavt....kklpilqiHgeeDpvvplalgka 177
                    k+++ +v +  + l  ++++  + t++       +p +q H   D++ p + +k 
     EGE27326.1 111 KPISQAVLLDpSLLTARSAFLYHVTKTMdkyiGRIPKFQYHL-IDQLTPAQKSKY 164
                    ****99988724445556666676666542222467777774.566666665555 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.3e-05     0.078      45      77 ..      68     100 ..      14     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
                 S-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHH CS
    Lipase_3  45 eslreqvlkelkrllekypeysivvtGHSLGga 77 
                 +s+  qv +++++  +++   ++v +GHSLG+ 
  EGE27326.1  68 QSMTHQVGDSIDDACREHGVSTLVAVGHSLGAM 100
                 58889*************************984 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.5e-05      0.08      86     147 ..      59     120 ..      43     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
                 TTCCCCCCHCHHHHTHHHHHHHHHCSEECCC.EEEEEETHHHHHHHHHHHCSTTTCCEEEEES CS
    Esterase  86 tegpgaeayetfltqeLlplldanfrtapdg.ravaGqSmGGlgALilalkhpdrFgsvssfS 147
                 +++p  +++ + +t+++ + +d+  r +  +  +++G+S+G+++ L + + +p+  +++  + 
  EGE27326.1  59 PNYPVDHHW-QSMTHQVGDSIDDACREHGVStLVAVGHSLGAMTTLQTLIANPKPISQAVLLD 120
                 555555555.568999**************98899******************9875555544 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.3e-05     0.096      81     127 ..      84     129 ..      35     191 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.3e-05
  LIDHydrolase  81 sekdvklilvGHSvGaYialevlkrlsersikkvvlLfPtiediakS 127
                   ++  + l+ vGHS Ga  +l++l   ++  i+++vlL P +   + +
    EGE27326.1  84 EHGVSTLVAVGHSLGAMTTLQTLIANPKP-ISQAVLLDPSLLTARSA 129
                   45667899****************99997.*********99776554 PP

>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.7e-05       0.1     201     268 ..      51     129 ..      44     144 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.7e-05
                  HHH.TT-----SS--SS-..GGGGTT-EEEEE.......EEEEEETHHHHHHHHHHHH-.TTS-EEEEES---TTS-GG CS
  PAF-AH_p_II 201 ein.lGepvenvldsdfd..lqqlKdnldtsk.......vaviGHsFGgAtvikslsed.teFrcaialDaWmlPveee 268
                  +in lG+ ++  +d +++   +q+ d++d +        ++ +GHs G+ t++++l  + +    a++lD+ +l  ++ 
   EGE27326.1  51 SINeLGTHPNYPVDHHWQsmTHQVGDSIDDACrehgvstLVAVGHSLGAMTTLQTLIANpKPISQAVLLDPSLLTARSA 129
                  5665677776667777776556677777765334455557889************98775889999***9988776665 PP

>> Peptidase_M66  Peptidase M66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.7   4.8e+03      85     113 ..      82     111 ..      68     117 .. 0.64
   2 ?   10.2   0.3   0.00015      0.26     260     304 ..     155     200 ..     125     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.7
  Peptidase_M66  85 fqkvpvsklkvsnhpiqrfd.ssylvlepr 113
                      +  vs l+++ h ++ +   ++l+++p+
     EGE27326.1  82 CREHGVSTLVAVGHSLGAMTtLQTLIANPK 111
                    455567777777777766541356666665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00015
  Peptidase_M66 260 eida.dgrcvkqdvmqggagdqsskyrfslfsdyearkiQrylkns 304
                    ++++ ++ ++++dv ++ ++ ++   + +lf+ +++r  Q+y+k +
     EGE27326.1 155 QLTPaQKSKYRKDVFDSRDDAYQALRHKALFASFDERSFQNYIKYG 200
                    333369*****************99999***************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2171.80
//
Query:       EGE27327.1  [L=451]
Description: phosphoglucosamine mutase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-41  140.2   0.0    1.8e-40  137.8   0.0    2.1  2  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    6.6e-30  103.6   0.0    1.4e-29  102.5   0.0    1.6  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.5e-20   73.7   0.0    9.4e-20   71.2   0.0    2.2  2  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    3.2e-12   46.4   0.2    1.3e-11   44.5   0.0    2.1  2  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.8   0.0   4.1e-44   1.8e-40       3     133 ..       3     135 ..       1     139 [. 0.98
   2 ?   -0.7   0.0      0.24   1.1e+03      76      96 ..     229     249 ..     205     253 .. 0.61

  Alignments for each domain:
  == domain 1  score: 137.8 bits;  conditional E-value: 4.1e-44
                 GBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHC..STS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEEEB-HHHHHHHHHHCCECEEEEE-- CS
   PGM_PMM_I   3 kfgtsGlRgkvgegeltpelveklgqaiaeylkae..akkkkvvvGrDtRvssrelaealaaglaanGvevillgllptPavsfairklkadagimita 99 
                 +fgt+G+Rg++g++++tp+++++lg +++++l ++  +k+++v++G+DtR s+  +++al ag+ a+Gv+v++lg+lptPa+++++++++ad g++i+a
  EGE27327.1   3 YFGTDGIRGQFGVFPITPDFLLRLGFGAGQVLMRQslNKRPSVLIGKDTRLSGYVIEAALQAGFNAAGVDVHMLGPLPTPAIAHLVKSFHADMGVVISA 101
                 8************************************************************************************************** PP

                 TTS-TTCCCEEEEETTTCE--CHHHHHHHHHHCC CS
   PGM_PMM_I 100 SHnppeyngiKvylsnGgpispeveekIeaiiek 133
                 SHnp+++ng+K+++++G +is+e+++ I +++++
  EGE27327.1 102 SHNPYQDNGVKFFNHEGKKISDEMQNSINDQLTA 135
                 ****************************999875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.24
                 EB-HHHHHHHHHHCCECEEEE CS
   PGM_PMM_I  76 llptPavsfairklkadagim 96 
                  ++  ++++a+r+++ad gi 
  EGE27327.1 229 STHPNIIQAAVREYGADVGIA 249
                 333345666777777777765 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   3.2e-33   1.4e-29       1     107 [.     268     368 ..     268     374 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 3.2e-33
                  HHHHHHHHHHHHHHCHCSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTTBSS--HHHHHHHHHHHHHH CS
  PGM_PMM_III   1 dgdqllallakylleeklkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiifldeattkDGilaallvleilae 98 
                  dgd +l++lak+l     kp  gvv+t+m++ ale +++++gi +++++vGd+yv+++++e+g+++GgE Sghi++ld+++t+D+i+a l+vl+ +ae
   EGE27327.1 268 DGDGILYILAKHL-----KPV-GVVGTLMSNVALELALANQGIGFYRAQVGDRYVMQALQERGWSIGGEPSGHILCLDKSRTGDAIVAGLQVLSCIAE 359
                  69*********99.....344.6*************************************************************************** PP

                  HTS-HHHHH CS
  PGM_PMM_III  99 tgkslsell 107
                  tgksl el+
   EGE27327.1 360 TGKSLRELV 368
                  ********9 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.47   2.1e+03      74      88 ..      84      98 ..      62     134 .. 0.78
   2 !   71.2   0.0   2.1e-23   9.4e-20       2     103 .]     167     264 ..     166     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.47
                HHHHGGGGG-SEEEE CS
  PGM_PMM_II 74 lielvkkegadlgla 88
                +++lvk+ +ad+g++
  EGE27327.1 84 IAHLVKSFHADMGVV 98
                556677777777775 PP

  == domain 2  score: 71.2 bits;  conditional E-value: 2.1e-23
                 HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-EEEES-----TT-TT...SS----TT-TTTTHHHHGGGGG-SEEEEE-TTS-BEE CS
  PGM_PMM_II   2 aYiealkekvdseaikksglkvvidplhGaggeilkellkelgvdvvelnaepdpdfpt...kapnpeekealkllielvkkegadlglafDgDaDRlg 97 
                 +Yie +k  ++   ++ s+lk+vid+++Gag  +++++l+elg++v+ ++ +p++   +   +        +   ++++v+++gad+g+a+DgD+DR++
  EGE27327.1 167 RYIEYCKGSFP-YHLNLSNLKIVIDCANGAGYSVAPRVLQELGAQVIAIHNTPNGININdncG-----S-THPNIIQAAVREYGADVGIALDGDGDRII 258
                 69999999998.6778889************************************77774222.....3.455667789******************** PP

                 EEETTE CS
  PGM_PMM_II  98 vvderG 103
                 ++d++G
  EGE27327.1 259 MADNQG 264
                 ***987 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   5.7e+03      12      39 ..     143     169 ..     135     170 .. 0.63
   2 !   44.5   0.0     3e-15   1.3e-11       1      73 [.     378     446 ..     378     447 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
                 ..EECCCCCTTHHCCCCCCCCGCCEEEE CS
  PGM_PMM_IV  12 vvaalaallkvasikeglkilledGrrl 39 
                  +a+l++++++a i +  +i +++Gr +
  EGE27327.1 143 SLARLEGIKADA-IGKNHRIADANGRYI 169
                 467788886664.444457777777766 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 3e-15
                 CCCCCHCC-TT..EECCCCCTTHHCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEESSHHHHHHHHHHHHHHH CS
  PGM_PMM_IV   1 linvrveekakvvaalaallkvasikeglkilledGrrlavRpSGTepllrvyvEaksdeelarlaeevaell 73 
                 linvr+++  + + + ++l     +k++++ l   Gr l +R+SGTep++rv+vE ++++ ++++a+++a+++
  EGE27327.1 378 LINVRLTQMSN-PYDNDELNII--FKNAEEQLSDQGRLL-IRQSGTEPVIRVMVEHQNQAVCQEVAQKLAAEV 446
                 68888888766.4444444333..778************.****************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3481.48
//
Query:       EGE27328.1  [L=211]
Description: pyridoxamine 5'-phosphate oxidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-22   78.6   0.0    4.4e-22   78.1   0.0    1.2  1  Putative_PNPOx   Pyridoxamine 5'-phosphate oxidase
    2.1e-15   56.5   0.5      5e-15   55.3   0.5    1.7  1  PNP_phzG_C       Pyridoxine 5'-phosphate oxidase C-terminal d
    2.3e-08   34.5   0.0    3.8e-08   33.9   0.0    1.4  1  Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
      0.088   12.4   0.0        0.3   10.7   0.0    1.8  2  Pyrid_ox_like    Pyridoxamine 5'-phosphate oxidase like


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   9.9e-26   4.4e-22       1      87 [.      32     117 ..      32     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 9.9e-26
                     HHHHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEESCH CS
  Putative_PNPOx   1 ldeelreflaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallflddelgrgvrieGtaelvsdg 87 
                     +de++++ l e+ a+ lAT++ d+rP+v++vl  ++ ++ g vf+tn+ds+k+++++ np++ +lf++ +l+r+vr++G+  +vs++
      EGE27328.1  32 FDEAVAAKLPEPYAMSLATCGGDNRPSVRIVLMRELTEQ-GVVFYTNYDSAKGQDIADNPNAEVLFFWHSLERQVRLSGQMVKVSAE 117
                     68999999*******************************.******************************************99986 PP

>> PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.5   1.1e-18     5e-15       1      43 []     171     211 .]     171     211 .] 0.97

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.1e-18
  PNP_phzG_C   1 WgGyrvvPeeiEFWqgrpsRlHdRfrYereeedgkWkierLsP 43 
                 WgGy ++ ++ EFWqgr  R+HdR++Y++++  ++W+i rL P
  EGE27328.1 171 WGGYELIIDHAEFWQGRLGRMHDRMAYTKQG--DEWQIMRLLP 211
                 ****************************987..79******99 PP

>> Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   8.4e-12   3.8e-08       4      97 ..      28     112 ..      25     115 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 8.4e-12
                      THHHHHHHHHHTT-GGGGEEEEEEE-T.TS-EEEEEEE---B-TT...SS-.EEEEEETTSHHHHHHH.H--EEEEEEEETTTTEEEEEEEEEE CS
  Pyridox_oxase_2   4 WrsllesalkknkkkkstefqlaTvdeeegkPrvRtvvfRgfleekkeesdvltfttDvrseKvkqlessnaaveavfylketreQfRisGkaf 97 
                      +r+ +++a+++ k ++ + ++laT    +++P+vR v +R+  e+       + f t   s K ++++ +n+++e++f+ ++ ++Q R+sG+++
       EGE27328.1  28 FRAWFDEAVAA-KLPEPYAMSLATCG-GDNRPSVRIVLMRELTEQG------VVFYTNYDSAKGQDIA-DNPNAEVLFFWHSLERQVRLSGQMV 112
                      67788899998.999999********.589***********99974......79**************.9*********************986 PP

>> Pyrid_ox_like  Pyridoxamine 5'-phosphate oxidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.7e-05       0.3      40      83 ..      69     112 ..      45     124 .. 0.82
   2 ?   -1.7   0.0      0.43   1.9e+03     119     133 ..     178     192 ..     175     200 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.7e-05
  Pyrid_ox_like  40 dgdlwfltkkdsdkvkeirkdsqvnlafsdeskkkyvsvsGtae 83 
                    +  + f+t+ ds k ++i+ +++++++f  +s +  v +sG++ 
     EGE27328.1  69 EQGVVFYTNYDSAKGQDIADNPNAEVLFFWHSLERQVRLSGQMV 112
                    4446699**********************999999999999853 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.43
  Pyrid_ox_like 119 peeaeyWdsksgklv 133
                    +++ae+W+   g++ 
     EGE27328.1 178 IDHAEFWQGRLGRMH 192
                    589****99877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1758.43
//
Query:       EGE27329.1  [L=293]
Description: outer-membrane lipoproteins carrier protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-41  142.4   2.0    1.4e-41  141.9   2.0    1.2  1  LolA       Outer membrane lipoprotein carrier protein LolA
    1.6e-06   27.6   0.2      0.032   13.6   0.0    2.3  2  DUF2092    Predicted periplasmic protein (DUF2092)
  ------ inclusion threshold ------
       0.11   12.2   0.3        4.9    6.8   0.0    2.6  3  LolA_like  Outer membrane lipoprotein-sorting protein


Domain annotation for each model (and alignments):
>> LolA  Outer membrane lipoprotein carrier protein LolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   2.0   2.4e-45   1.4e-41       2     165 .]     124     283 ..     123     283 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 2.4e-45
                 T-SEEEEEEEEEEE-TTS--EEEEEEEEEEETTTEEEEEE-TTS-EEEEEETTEEEEEETTTTEEEEEEHHHHTTT-GGGGGGS-HHHHTTTEEEEEEE CS
        LolA   2 kvktlsadFvQtvtsgegkkiqetsGklaikrPgkfrweytsPdeqlivsdgktvwlydpdleqvtieslkqalsktplvlLledkaklskdynvsvkk 100
                 ++++++a+F+Qt++ g+  k+ +++G + ++r ++frwe++sP eqliv++g+t+w+yd+dl+q+t++s+  ++++ p+ lL++d+ ++++ +nvs ++
  EGE27329.1 124 GIRSMTANFSQTTQAGN--KKTNFTGMMGVQRQNQFRWETKSPAEQLIVANGNTMWIYDKDLQQATRQSVGSQIGEVPALLLSGDPGQIDRHFNVS-QP 219
                 6789*************..889**************************************************************************.** PP

                 ETTEEEEEEEESSS-SSECEEEEEE.ETTEEEEEEEEETT--EEEEEEEEEEES----GGGG--- CS
        LolA 101 eqdldtltlkpkakdanlsritigfdkkgllkqlkvvdaqGqrttitfsnvkenakladdlFkft 165
                 + +++ + l+pk+++an+ +++++f + g +  + + d+ Gq+tti+fsn+  n+kl++++F+ft
  EGE27329.1 220 DANKNYFILTPKSSNANFGSLSLSF-NGGRPVMMVLQDSIGQTTTIQFSNIALNKKLPATQFNFT 283
                 *************************.4555*********************************97 PP

>> DUF2092  Predicted periplasmic protein (DUF2092)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.7e-05       0.1      38      93 ..     143     197 ..     112     203 .. 0.77
   2 !   13.6   0.0   5.3e-06     0.032     180     209 ..     262     291 ..     250     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.7e-05
     DUF2092  38 fsasrevkvqrPdklrvdtsgdekdrefyyDGktftlydkaenvYaqapapgtide 93 
                 +  ++ + vqr +++r +t+++ + + ++ +G t+ +ydk+ +  +++ ++++i e
  EGE27329.1 143 TNFTGMMGVQRQNQFRWETKSPAE-QLIVANGNTMWIYDKDLQQATRQSVGSQIGE 197
                 34467899***********99865.57899***********999888888888876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.3e-06
     DUF2092 180 ytaefsdWnldpeipedtFrftpPkgArki 209
                  t++fs+  l++++p+++F+ftpP+g   i
  EGE27329.1 262 TTIQFSNIALNKKLPATQFNFTPPNGVDVI 291
                 5679*********************98765 PP

>> LolA_like  Outer membrane lipoprotein-sorting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       0.7   4.2e+03     119     146 ..      48      75 ..      43      83 .. 0.74
   2 ?    2.5   0.0     0.018   1.1e+02      25      44 ..     171     190 ..     161     197 .. 0.83
   3 ?    6.8   0.0   0.00083       4.9     145     177 ..     250     281 ..     245     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.7
                 EEETTS-EEEEEEEEEEEEETTEEEEEE CS
   LolA_like 119 fydksgkllKtltvsdiekidgrwtptk 146
                 +++ +++ ++ +++  +++++g+ + t+
  EGE27329.1  48 IWQNKNRCYQIYRIALYQEYQGKFMLTS 75 
                 5677788888888888888888777654 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.018
                 SSTTEEEEEETTTTCEEEE- CS
   LolA_like  25 ekdddlWlYlPalkrvrris 44 
                 ++++ +W+Y+ +l++  r s
  EGE27329.1 171 ANGNTMWIYDKDLQQATRQS 190
                 67999*********999876 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.00083
                 EEEEEEETTT--EEEEEEEEEEE--.--GGGCS CS
   LolA_like 145 tkmtmedlkkghkTvleisevefdkglpdklFt 177
                   m+++d   g+ T++++s++ ++k+lp++ F+
  EGE27329.1 250 VMMVLQD-SIGQTTTIQFSNIALNKKLPATQFN 281
                 5556666.6799*****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2241.59
//
Query:       EGE27330.1  [L=70]
Description: putative heavy metal binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-16   58.6   1.4    7.1e-16   58.4   1.4    1.1  1  HMA       Heavy-metal-associated domain


Domain annotation for each model (and alignments):
>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   1.4     4e-20   7.1e-16       2      61 ..       6      65 ..       5      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 4e-20
         HMA  2 vrvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61
                ++++gm+C+gC+++v+k+L+++ gVe+++v+l+ + ++V +d+++ ++ +i+eaie+a +
  EGE27330.1  6 IKIEGMTCGGCVSSVQKALQAVVGVEAISVSLEDGLAVVAYDESDCDVPAIVEAIEEADF 65
                689******************************************99*********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 563.60
//
Query:       EGE27331.1  [L=202]
Description: NADH-quinone oxidoreductase subunit A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-29  100.8   2.7    5.3e-29  100.3   2.7    1.2  1  Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, ch
  ------ inclusion threshold ------
        0.1   11.5   0.3       0.31   10.0   0.3    1.6  2  DUF2434      Protein of unknown function (DUF2434)


Domain annotation for each model (and alignments):
>> Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   2.7   5.9e-33   5.3e-29       2      99 .]      19     116 ..      18     116 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 5.9e-33
                  HHHHHHHCHSS-----HHHHS-SSSS--SS---.--HHCHHHHHHHHHHHHHHHHHHHHHHHHSST..HHHHHHHHHHHHHHHHHHHHHHHHH-S-XX CS
  Oxidored_q4   2 llllllsallgpkkpnkeklspYEcGfepvgearlrfsvkfylvallFliFDvevvflfpwavslkelglfgliemllFllillvglvYewkkgaLeW 99 
                  +++l++ +llg +++ ++k++++E+G+ + g+ar+r+s+kfylva++F+iFD+e+++l+++avs++e+g++g++++++F++il+vglvYe++ ga++W
   EGE27331.1  19 VFMLVVPRLLGGRSSGSQKQENFEAGVVSAGTARIRLSAKFYLVAIFFVIFDLEALYLYAYAVSVREVGWAGFASAFVFIAILFVGLVYEMRLGAMNW 116
                  7899*******999***********************************************************************************9 PP

>> DUF2434  Protein of unknown function (DUF2434)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   3.4e-05      0.31     179     249 ..      10      84 ..       5     116 .. 0.73
   2 ?    1.2   0.1     0.017   1.5e+02      42      82 ..      83     124 ..      77     143 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.4e-05
     DUF2434 179 Ylflll...nfflvvprsWtaiekqrspeqtleeakpaatdaRfkagafllviawlvivvslrh.sikkYkprkr 249
                 Yl++ l    f+lvvpr  +  +++ +++++ e    +a  aR +++a + ++a++++++ l+  ++++Y  + r
  EGE27331.1  10 YLLASLglvVFMLVVPRLLGGRSSGSQKQENFEAGVVSAGTARIRLSAKFYLVAIFFVIFDLEAlYLYAYAVSVR 84 
                 5555443337999*******99999999888888999999*********************98526677744444 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.017
     DUF2434  42 igtrgkvGiafavlfalaivl.tlvnLrkhgklalpeekrfe 82 
                 +++ g +G a a +f++++++ +++ +r  +++ +p++kr++
  EGE27331.1  83 VREVGWAGFASAFVFIAILFVgLVYEMRLGAMNWVPADKRIK 124
                 566678899988877766666145567666677889999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1733.55
//
Query:       EGE27332.1  [L=56]
Description: hypothetical protein EA1_03470 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 444.51
//
Query:       EGE27333.1  [L=223]
Description: NADH dehydrogenase subunit B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-21   77.1   0.2    1.5e-21   76.6   0.2    1.2  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
  ------ inclusion threshold ------
      0.077   12.2   0.2       0.11   11.7   0.2    1.2  1  CitMHS       Citrate transporter


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.2   1.7e-25   1.5e-21      39     129 ..      88     172 ..      64     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 1.7e-25
                  HHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE-HHHHHHHC.S-E.EEE-SSS--HHHHHHHHH CS
  Oxidored_q6  39 ieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvgeevgellevvpvdinipGCPphpeailetll 129
                  i+a+ ++adv++v G++  k+++ + +l+e++ ++k+vi++G+CA +GG++  ++    +  v+++++ +pvd+++pGCPp+pea++++++
   EGE27333.1  88 IRASPRQADVMIVAGTCFVKMAPVILRLYEQMLEPKWVISMGACANSGGMYDIYS----V--VQGVDKILPVDVYVPGCPPRPEALIQAIM 172
                  3334459********************************************5555....5..579***********************997 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.2e-05      0.11      93     129 ..     102     137 ..      95     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.2e-05
                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  93 gv.vlimipivlslakrlkklppllliplalaanigga 129
                 g+ ++ m+p++l+l++  ++l p  +i ++ +an gg+
  EGE27333.1 102 GTcFVKMAPVILRLYE--QMLEPKWVISMGACANSGGM 137
                 334999*********9..59****99***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1807.90
//
Query:       EGE27334.1  [L=582]
Description: bifunctional NADH:ubiquinone oxidoreductase subunit C/D [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.3e-102  341.2   0.0   4.5e-102  340.8   0.0    1.2  1  Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd s
    9.1e-41  139.3   0.4    2.1e-40  138.1   0.1    1.8  2  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s


Domain annotation for each model (and alignments):
>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.8   0.0    5e-106  4.5e-102       1     271 []     312     582 .]     312     582 .] 1.00

  Alignments for each domain:
  == domain 1  score: 340.8 bits;  conditional E-value: 5e-106
                     HTT-HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHSSSS-BSHHHHHHHT CS
  Complex1_49kDa   1 DlGaltvflyafreRekildlleevtGaRltasyiriGGvarDlpegllekikeflkelekkldeleklltknrifkkRtkgvgvlskeealelg 95 
                     D G +t+++y+f++R+k +d++e+vtG R++++++riGG a+Dlp+g+++ ++efl++++k++de+ k  ++n+++k Rt++v+ +++++al++g
      EGE27334.1 312 DAGGMTPVFYMFADRQKAYDVIEAVTGYRMHPAWFRIGGTAHDLPNGWQRLVREFLDWMPKRIDEYVKATMTNSVLKGRTQNVAQYDAKHALAWG 406
                     88********************************************************************************************* PP

                     T-SSSSGGGT-TTTHHHHSS-SSGGGS-------SSBSHHHHHHHHHHHHHHHHHHHHHHHHT--.S-SB---TTTS---GGGGGT-HHHHHHHH CS
  Complex1_49kDa  96 ltGpvlRasGvkyDlRkaepYeaYdeldfdvpvgeegDvydRylvrveEmrqSlkIieqaleklpegpvlaedkkvalpkkeevkksmealihhf 190
                     +tG+ lRa+G+++DlRka+pY +Y++++fdvpv  +gD+ydR+lv++eE+rqSl+Iieq+l+++p+g+++ae++  ++p+ke++ +++e+li+hf
      EGE27334.1 407 VTGAGLRATGIEFDLRKARPYLGYENFEFDVPVFYNGDAYDRCLVKIEEIRQSLRIIEQCLNNMPSGAYKAEHPLAVPPPKERTLQDIETLINHF 501
                     *********************************************************************************************** PP

                     HHHHS-----SEEEEEEEEETTEEEEEEEEEESSSS-SEEEEE-HHHHTTTTHHHHTTTS-SGGGTHHHHTT---HHHHH- CS
  Complex1_49kDa 191 klvtegfkvpkgevyaavEapkGelgvylvsdgsskpyrlkirapsfvnlqaleellkgellaDvvailgsldivlgevDR 271
                       v++g  +p+ge   +vE  kG   +y++sd s+++yr++ir+p+f++lq+++++++g+l++D++++l+s+div++++DR
      EGE27334.1 502 VSVSWGPVMPAGESACMVEGVKGLNSYYVISDKSTMSYRTRIRTPTFAHLQQMPSVINGSLVSDAIIYLASIDIVMADCDR 582
                     ********************************************************************************9 PP

>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.1   2.3e-44   2.1e-40       2     120 ..      35     160 ..      34     162 .. 0.93
   2 ?   -3.0   0.0       1.2   1.1e+04      42      71 ..     528     558 ..     516     559 .. 0.53

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 2.3e-44
                     E--HHHHHHHHHHHHH...TT--EEEEEEEEETT.........SSSEEEEEEEE--S-.-EEEEEE....-S-BEE--TTT-STHHHHHHHHHHH CS
  Complex1_30kDa   2 vvepedllevakflkdeeelgfdvlsdltavDek.........eerfevvyhllsleknerirvkvevdeeepevpSvtdlfpgadwyEREayDm 87 
                     +v+ ++ll+v+ fl++ ++  f +l+dl+a+De+         +++f+v+yhl+sle+n  ir+kv++ +e ++vpS+t+++p+a+wyERE++Dm
      EGE27334.1  35 WVACDELLDVLLFLRTLPK-PFVMLVDLSAIDERlrqyrhglpDSDFTVFYHLMSLERNSDIRIKVAL-KEGEHVPSATKIYPNANWYEREVWDM 127
                     78899**********9655.7***********77888889999***********************99.66778********************* PP

                     SHHBCTTSSTSS-SSSSTTSSS-TTSTTS---- CS
  Complex1_30kDa  88 fGivfeghpdlrrillpedfeghPLRkdfplsg 120
                     fG+vf+ghp+l+rillp+ +eghPLRk++ +++
      EGE27334.1 128 FGVVFDGHPHLTRILLPKYWEGHPLRKEYHARA 160
                     *****************************8876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
                     EEEEE...--S-.-EEEEEE....-S-BEE--T CS
  Complex1_30kDa  42 vyhll...sleknerirvkvevdeeepevpSvt 71 
                     +y+++    ++ + rir+ + +  + +++pSv+
      EGE27334.1 528 YYVISdksTMSYRTRIRTPTFA--HLQQMPSVI 558
                     4555422122334555555533..466688875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4422.18
//
Query:       EGE27335.1  [L=255]
Description: hypothetical protein EA1_03485 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-25   89.6  24.7    2.8e-25   89.3  24.7    1.0  1  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3  24.7   1.6e-29   2.8e-25       3     235 ..       8     246 ..       7     247 .. 0.84

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 1.6e-29
        TauE   3 lagllaGfvagllGiGggliavPlLllllppavavatsllavvatslsgalahrrrgnvd.....wrlllllllgsliGallGallllllpsellkllf 96 
                 +++++a ++ g++G+G+ ++ + +L++++p   +va+ +l ++++sl  + ++ ++g  +     +++ +ll++gs++G++lG+ lll lp ++l ll+
  EGE27335.1   8 IVFIAAAILHGITGMGFPMLGTTALAFIMPLSKVVALVALPSLLMSLLVLCSNNKKGFYQeivyyLKTYKLLAIGSVVGSILGVKLLLILPVSWLFLLM 106
                 5788899********************669999********************99884333445579******************************** PP

        TauE  97 gvlllllallmll..rkkrsrakgrerrptaillvligglvGllsGllGiGgGfllvpllllll..glplkkavatslllilvislagalgy....ala 187
                 +v+ l++++  +l   +k+++    +   +   +vl     G+l+G++G+++ ++ ++ll++ll    +  +++ +s+l+ l+  ++ + ++    +l+
  EGE27335.1 107 AVITLYYSVNGILnvCAKAKN---IQVVANNKNMVL----FGFLAGIIGGSTNAMSPILLIFLLseTENKNRIAKASNLCYLLAKIVQIYMLkdqyLLL 198
                 ***********9954332222...234444443445....57888888888888777777777766777788****************99966654557 PP

        TauE 188 gavdwpllllllpgallGallGarlarrlsertlrrlfallllvlgvk 235
                     + l++ll + +++G ++G +l+ ++s+  +++l++++llvl++k
  EGE27335.1 199 NKSEYGLIFLLSILSVIGLYVGIWLRAKISPNFFKMLIFIVLLVLALK 246
                 7778999999************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1113  (0.0620782); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1888.93
//
Query:       EGE27336.1  [L=169]
Description: NADH dehydrogenase subunit E [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-42  144.0   0.0    3.2e-42  143.8   0.0    1.0  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
     0.0037   16.2   0.0     0.0045   16.0   0.0    1.2  1  CP_ATPgrasp_2    Circularly permuted ATP-grasp type 2


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.8   0.0   3.6e-46   3.2e-42       2     144 ..      26     168 ..      25     169 .] 0.98

  Alignments for each domain:
  == domain 1  score: 143.8 bits;  conditional E-value: 3.6e-46
                      HHHHTTS--GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS-SS---SEEEEEE-SHHHHTTTHHHHHHHHHHHHT-- CS
  2Fe-2S_thioredx   2 keiiakypekrsaliplLklvQeeegwlpeealeevaellgvppaevyevatFYsmfnlkpvgkyviqvCtttpCalrgseeilealekklgik 95 
                      ++ i++yp+ r+a++++LklvQ+++gw++++ + ++a++lg+++a+v++vatF++ + + pvg++vi vC++++C+l+g e++l++++ +lgi+
       EGE27336.1  26 HHHIHHYPQARAAVLDALKLVQKRNGWVNDAQVVAIANMLGISVADVEGVATFFNRIYRLPVGRHVILVCDSIACYLTGYETLLAEFKAQLGIE 119
                      6789****************************************************************************************** PP

                      TT-B-TTSSEEEEEES--S-GGGSSEEEESSSSEEES-HHHHHHHHHHH CS
  2Fe-2S_thioredx  96 agettadgkftleeveClGaCanaPvvqindevyedltpekveeilekl 144
                      +g+ttadg+ftl  ++ClG+C+++  v+i++++y+ + p++v  +le++
       EGE27336.1 120 FGQTTADGRFTLLPICCLGNCDKGASVLIDEDTYGPVLPSEVGLLLEQY 168
                      *****************************************99999876 PP

>> CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     5e-07    0.0045     231     284 ..      56     111 ..      26     118 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5e-07
                    TTS-EEES-TTTHHHHSTTTGGGHHHHHHHHH-S--SS..EE---EETTSHHHHHH CS
  CP_ATPgrasp_2 231 agnvavaNalGsgvaddkalyaflpaliryllgeellL..pnvptwwcgeeealee 284
                    a+ va+aN+lG  vad +++++f +++ r  +g + +L  ++++ ++ g e+ l+e
     EGE27336.1  56 AQVVAIANMLGISVADVEGVATFFNRIYRLPVGRHVILvcDSIACYLTGYETLLAE 111
                    6789******************************9998556788888777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1286.55
//
Query:       EGE27337.1  [L=472]
Description: NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-45  153.6   0.0    4.9e-45  153.1   0.0    1.2  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    1.6e-25   89.0   0.0    2.5e-25   88.3   0.0    1.4  1  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi
    1.7e-05   24.6   0.0    3.4e-05   23.6   0.0    1.6  1  SLBB          SLBB domain


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.0   8.2e-49   4.9e-45       1     151 [.      87     258 ..      87     259 .. 0.94

  Alignments for each domain:
  == domain 1  score: 153.1 bits;  conditional E-value: 8.2e-49
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkk...kylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaea 94 
                   +k a+++GrGGagf +++K+ ++    +   +yli+Na+E+EPg++kDrllm++ p +++eG+ i a+a+ga+ g++++r+e+  a+++l++a++e 
    EGE27337.1  87 IKTANVRGRGGAGFNAGLKWTFMTPP-DggvRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQNAINEC 182
                   789******************99874.3488****************************************************************** PP

  Complex1_51K  95 kaagl...........ldievvklagkYpaGeekaLiesltgr.evprgkpp..advgv.....vvnNveTlaavy 151
                    a++l           ++++++++ag+Y++Gee+aLi+ l+gr + pr+kpp    +g      vvnNveTl + +
    EGE27337.1 183 VANHLlgdgilgtefnFTLHIHTGAGRYICGEETALINCLEGRrANPRTKPPfpQVSGAwgrptVVNNVETLNNMP 258
                   99888**************************************999****9984445559************9875 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   4.3e-29   2.5e-25       3      84 ..     376     458 ..     374     459 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 4.3e-29
                  HHHHHHHHHHH--S--HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHS.S--SSTHHHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S   3 arrllefyaaesCGkCtpCreGtkrllelleriaagegteedldlleelaetik.gtslCalgdsaanpvlsalrkFreefea 84 
                   ++l +f+++esCG+CtpCr G+++++++l+ + +g+++ +d+d+l+el++ +  g+++Ca++++a++p++sal++Fr+efe+
   EGE27337.1 376 SKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQAQADDIDKLSELTRDLWlGKTFCAHAPGAMEPLMSALKYFRHEFEQ 458
                  57899*********************************************888779*************************97 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   5.7e-09   3.4e-05       4      55 ..     288     332 ..     285     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5.7e-09
                 EESSBSS-EEEEEETT-BHHHHHHTTT-SBSS.........-EEEE-SSSSS CS
        SLBB   4 VtGeVkrPgnyevpigttlsdlieqaGGltddadlksvnLarlavipgGpmm 55 
                 V+G Vk+ g +e+p g t ++lie+aGG+ +  +lk       a +pgG+++
  EGE27337.1 288 VSGRVKDAGLWELPFGHTARELIELAGGMQEGLSLK-------AWLPGGAST 332
                 9***************************99987732.......556677665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3674.80
//
Query:       EGE27338.1  [L=1033]
Description: NADH dehydrogenase subunit G [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-15   56.9   2.4    2.8e-15   55.6   1.9    2.0  2  NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur
    3.6e-12   46.1   0.3    8.9e-12   44.8   0.3    1.7  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
    2.6e-10   40.2   0.1    5.4e-10   39.2   0.1    1.6  1  Fer2_4           2Fe-2S iron-sulfur cluster binding domain
    1.2e-08   34.7   1.0    3.4e-08   33.3   0.1    2.2  2  Fer2             2Fe-2S iron-sulfur cluster binding domain
    1.5e-05   24.2   0.0       0.26   10.2   0.0    3.1  3  Molybdopterin    Molybdopterin oxidoreductase
  ------ inclusion threshold ------
       0.53   10.2   4.7        1.9    8.4   0.5    3.2  3  Fer4             4Fe-4S binding domain
        2.6    8.4   4.9          2    8.8   1.0    2.4  2  Opy2             Opy2 protein
          3    8.1   9.2       0.32   11.2   0.9    3.2  3  Fer4_6           4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   1.9   1.2e-18   2.8e-15       1      39 [.      91     129 ..      91     130 .. 0.96
   2 ?   -3.1   0.0       2.6   5.8e+03       6      14 ..     511     519 ..     509     519 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.2e-18
  NADH-G_4Fe-4S_3   1 RktilellLanHpldCltCdknGnCeLQdlayelgvees 39 
                      Rk i+e l++nHp+dC+tC+ +G+C+LQd++y+ g++++
       EGE27338.1  91 RKSIVEYLMTNHPHDCPTCEEGGHCHLQDMTYMSGHHRR 129
                      9**********************************9876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.6
  NADH-G_4Fe-4S_3   6 ellLanHpl 14 
                      +l++an pl
       EGE27338.1 511 DLIMANRPL 519
                      89****996 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.3     4e-15   8.9e-12       1      54 [.     224     277 ..     224     278 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 4e-15
                     SEEEEEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCHHCCC CS
  Molybdop_Fe4S4   1 ekvvktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtllervy 54 
                     +++++++C+ C+ gC++ + +++g+ +++e   +h+vn   lC +Gr+++ +v+
      EGE27338.1 224 MQYAPSICHGCSAGCNISAGERYGELRRIENRYNHDVNGYFLCDRGRFGYGYVN 277
                     67899***********************************************98 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.1   2.4e-13   5.4e-10       6      79 ..       4      82 ..       1      85 [. 0.90

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 2.4e-13
      Fer2_4  6 ltfDGkevtvpeGdtvasAllangvdvprsckygrprgelcaggeCrnClVeve........gepn.vracstpvedGlkvet 79
                +++DGk++ v   d ++sA+l  g+dvp  c++      l+++g+Cr+C V+          g+++ v +c++   d + ++ 
  EGE27338.1  4 IHIDGKAYDVDGSDNLLSACLSLGIDVPYFCYH----PALGSVGSCRQCAVKQYnnaedyqaGKGRlVMSCMVAPSDDMYISV 82
                78*******************************....99*************9777888888555526***********9876 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   1.5e-11   3.4e-08       1      77 [.       4      74 ..       4      75 .. 0.79
   2 ?   -1.3   0.1      0.94   2.1e+03      19      41 ..      94     116 ..      83     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.5e-11
                EETTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSS......SSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2  1 itidgkevevevadgettlldaaeenggidipysCgg......ggCgtClvevlegevqsdetelegeeldegklrlaCqtiv 77
                i+idgk   ++v dg   ll a+ +  gid+py+C++      g+C+ C+v+     +  +    e+ +  +g l+++C++ +
  EGE27338.1  4 IHIDGK--AYDV-DGSDNLLSACLSL-GIDVPYFCYHpalgsvGSCRQCAVKQ----Y--N--NAEDYQAGKGRLVMSCMVAP 74
                688999..5665.44555*******9.**************9888******92....2..2..455666677788****9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.94
                 HHHHHHHTTTTTSTTSSSSSS.SS CS
        Fer2  19 lldaaeenggidipysCgggg.Cg 41 
                 + +++ +n+  d p  C++gg C 
  EGE27338.1  94 IVEYLMTNHPHDCP-TCEEGGhCH 116
                 66667777788888.899999996 PP

>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00018      0.39       3     141 ..     283     403 ..     281     424 .. 0.78
   2 !   10.2   0.0   0.00012      0.26     365     429 ..     665     734 ..     605     737 .. 0.85
   3 ?    0.0   0.0      0.14   3.2e+02     221     281 ..     917     980 ..     822    1025 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00018
                    -S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHHCHHCCCCCT CS
  Molybdopterin   3 kyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaqqtigsdsrs 98 
                    ++P+++     +G+Fv+ s d A + +a+ lk      ++  v g +s ++  +es ++lk+l   +g +n+s+ +  a +      +  ++ +r+
     EGE27338.1 283 THPLKK---V-NGQFVKTSADLAVDGVADLLKG-----KN--VIGIGSARAS-LESNFALKRL---VGANNFSTGERAAVKDVV---ELGVALLRH 360
                    678888...5.8999999999999999999998.....33..4445565555.9****99987...577777777777777543...456777788 PP

                    TTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC CS
  Molybdopterin  99 nyessnpledlensdliilwGsNvreerpilnarirkaalkkk 141
                    + +   +l+++e +d +++ G ++ +++  +   +r+aa++k 
     EGE27338.1 361 EAVHQASLAQIETADSVFILGEDITQTASRVALSVRQAAKNKS 403
                    888888899*********************9777777777655 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00012
                    CSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEE.....EEESSS-STT-BEHHHHHHHH CS
  Molybdopterin 365 kldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqh.....lkqavsppgeaksdwkIlkaL 429
                      ++++vld +  +   +aD +L +a++ E +++ +++egr  +      k+  +p  e k+ w  l aL
     EGE27338.1 665 TQKTLIVLDHQSYEWHDKADFVLSSASFAESDGTLVSAEGRAGRffasyDKKYYEPTSELKDSWRWLHAL 734
                    56889999*999999*************************999876677788999999999999988887 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.14
                    HHHHHHHHHHH..HHHTSSEEEEECHHHHTSTTHHHHHHHHHHHH.HHCTHCSSTTCEEEEESS CS
  Molybdopterin 221 ariarelarna..aktagksmiivGaglnhrqdgdaiyravinLa.llvgnvgqpgGgwahlnG 281
                    ++ +++ a  +  ++ a + m+ vG++l+ +q+g++i   v  +  l+ g++g p G +  ++G
     EGE27338.1 917 VASQIKPAMWMinHDDAERWMVKVGDKLTLSQHGAEITLPVEVVDyLADGCIGYPDGAVPLMVG 980
                    3333333333311345566778888888877777777654433320223777777777766666 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.5   0.00087       1.9       5      16 ..     151     162 ..     147     163 .. 0.86
   2 ?    2.0   0.0     0.095   2.1e+02      16      23 ..     202     209 ..     201     210 .. 0.84
   3 ?   -1.4   0.1       1.1   2.4e+03       5      12 ..     228     235 ..     225     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00087
                 TTTSSS-THHHH CS
        Fer4   5 eekCigCGaCve 16 
                 +++Ci+C +Cv 
  EGE27338.1 151 MNRCIACYRCVR 162
                 689*******96 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.095
                 HHSTTTEE CS
        Fer4  16 evCPvgAI 23 
                 evCP+g+ 
  EGE27338.1 202 EVCPTGVF 209
                 8****986 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.1
                 TTTSSS-T CS
        Fer4   5 eekCigCG 12 
                 ++ C gC 
  EGE27338.1 228 PSICHGCS 235
                 788****5 PP

>> Opy2  Opy2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.46     1e+03      24      31 ..      42      49 ..      40      52 .. 0.78
   2 ?    8.8   1.0    0.0009         2       8      24 ..     103     119 ..     100     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.46
        Opy2 24 aqtCtsCa 31
                + +C +Ca
  EGE27338.1 42 VGSCRQCA 49
                56999998 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0009
        Opy2   8 apsCPsCpsgeeCvlta 24 
                 +  CP+C++g  C l+ 
  EGE27338.1 103 PHDCPTCEEGGHCHLQD 119
                 568**********9876 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9   0.00014      0.32       2      17 ..     147     162 ..     146     162 .. 0.88
   2 ?   -0.3   0.0      0.59   1.3e+03      17      23 ..     202     208 ..     201     209 .. 0.82
   3 ?   -0.8   0.6      0.82   1.8e+03       6      15 ..     228     238 ..     225     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
      Fer4_6   2 veidpdkCigCgdCvr 17 
                 +++  ++Ci C++Cvr
  EGE27338.1 147 IAHEMNRCIACYRCVR 162
                 77889*********97 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.59
      Fer4_6  17 rvCPega 23 
                  vCP+g+
  EGE27338.1 202 EVCPTGV 208
                 69***98 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.82
      Fer4_6   6 pdkCigCgd.C 15 
                 p+ C gC + C
  EGE27338.1 228 PSICHGCSAgC 238
                 799****7656 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 7192.65
//
Query:       EGE27339.1  [L=342]
Description: NADH dehydrogenase subunit H [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-117  392.7  19.3   1.3e-117  392.4  19.3    1.1  1  NADHdh    NADH dehydrogenase


Domain annotation for each model (and alignments):
>> NADHdh  NADH dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.4  19.3  7.4e-122  1.3e-117       2     298 ..      29     334 ..      28     335 .. 0.98

  Alignments for each domain:
  == domain 1  score: 392.4 bits;  conditional E-value: 7.4e-122
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-SSTTTTTTHHHHHHHHHCCS-----TTS-HHHHHHHHHHHHHHHHCTTTTS-SSS..SSS--TTH CS
      NADHdh   2 klllllvvlllvvalltlleRkvlAriqdRlGPnrvGplGllqplaDalKlllKediipkkadkllfllapvlalilallafaviPfge..vladlnvg 98 
                 ++l++++ l++++al++++eR++lA +qdR+GPnrvG+ G lq++aD+lK+++Ked++p+ adk lf+lap++a++ al++fa+iP+++   +ad n+g
  EGE27339.1  29 QTLIIFLGLVMTAALMIVYERRMLALWQDRYGPNRVGWQGSLQLVADMLKIFFKEDWTPNFADKRLFTLAPAIAMFGALASFAIIPLSPtlGAADWNIG 127
                 56788888999999**************************************************************************878999***** PP

                 HHHHHHHHHHCHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHCCCTT-CCCCHHHHHHHHHHHHHHCCTCTTBTT CS
      NADHdh  99 lllilalsslgvygillaGwasnskYallGalRsaaqmisyEvalglsllavvllagslslseiveaqeeiwfillqllafiifliallaetnraPFDl 197
                 +l+++a++ l+vy+++++Gwas +k+allG+lRsaaq+isyEv+lglsl++vv ++gs++l+eiv aq+++w+++ q+l+f++f++a +a t+r+PFD 
  EGE27339.1 128 ILFFFAMAGLAVYAVMFGGWASANKFALLGGLRSAAQTISYEVFLGLSLMGVVAMTGSFNLREIVLAQADVWNVIPQFLGFLTFCVAGVAVTHRHPFDQ 226
                 *************************************************************************9999********************** PP

                 TTSTTSSSSCCCTT-HCHHHHHHHHHHHHHHHHHHHHHHHHCT.SS-HCCS.......HHHHHHHHHHHHHHHHHHHHHC----TCHHHHHHHCCTCHH CS
      NADHdh 198 peaesELvaGfhtEYsgmkfalfflaeyanmvlvsalavllFlgGwllpfs.......gllwfllKvllllflfiwiratlpRlRydqlmklgwkvllp 289
                 peae+EL++G+h+EYsgmkf++ff++ey+n+v++sal+++lF+gGwl+pf+       +++wfl+K+l+++ lf++ir +l R Rydq+m++gwkv+lp
  EGE27339.1 227 PEAEQELAEGYHVEYSGMKFGMFFIGEYVNVVVISALMTCLFFGGWLAPFNldlpfvpPVFWFLIKTLFFMTLFVLIRGSLMRPRYDQVMNFGWKVCLP 325
                 *************************************************************************************************** PP

                 HHHHHHHHH CS
      NADHdh 290 lalanlllt 298
                 ++l+nll+t
  EGE27339.1 326 ITLLNLLAT 334
                 ******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2716.26
//
Query:       EGE27340.1  [L=182]
Description: NADH dehydrogenase subunit I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-13   49.4  16.8    2.7e-08   33.3   1.0    2.3  2  Fer4             4Fe-4S binding domain
    5.8e-12   46.0  11.9    9.5e-12   45.3  11.9    1.4  1  Fer4_7           4Fe-4S dicluster domain
    9.5e-10   39.3   6.1    0.00023   22.0   0.1    2.3  2  Fer4_16          4Fe-4S double cluster binding domain
    2.1e-09   37.4   8.3    7.2e-05   22.8   4.1    2.2  2  Fer4_21          4Fe-4S dicluster domain
    8.6e-08   32.2  10.5    2.9e-07   30.5  11.0    1.6  1  Fer4_9           4Fe-4S dicluster domain
    4.6e-07   29.9  11.2    1.2e-06   28.6  11.5    1.5  1  Fer4_10          4Fe-4S dicluster domain
    3.2e-05   23.8  13.1       0.03   14.4   1.3    2.4  2  Fer4_2           4Fe-4S binding domain
    3.8e-05   24.1  11.6     0.0039   17.6   0.6    2.3  3  Fer4_8           4Fe-4S dicluster domain
    9.9e-05   22.2  17.7     0.0084   16.1   1.2    2.3  2  Fer4_6           4Fe-4S binding domain
    0.00099   19.6  13.4      0.096   13.2   3.3    2.3  2  Fer4_17          4Fe-4S dicluster domain
     0.0048   17.3  14.9      0.097   13.2   1.5    2.3  2  Fer4_4           4Fe-4S binding domain
  ------ inclusion threshold ------
      0.095   12.8   4.9       0.15   12.2   2.0    2.1  2  ETF_QO           Electron transfer flavoprotein-ubiquinone ox
       0.35   11.4  13.2        3.2    8.4   3.7    2.7  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I
       0.58   11.0  14.6        1.7    9.5   2.0    2.2  3  Fer4_22          4Fe-4S dicluster domain
       0.99   10.5  25.4       0.55   11.3   5.6    2.3  2  Fer4_3           4Fe-4S binding domain
          2    8.6  12.5        9.8    6.4   1.3    2.3  2  Fer4_18          4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   8.9   1.7e-07   0.00019       6      24 .]      60      78 ..      59      78 .. 0.95
   2 !   33.3   1.0   2.4e-11   2.7e-08       2      24 .]      95     117 ..      94     117 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.7e-07
                TTSSS-THHHHHSTTTEEE CS
        Fer4  6 ekCigCGaCvevCPvgAIt 24
                e+C++C++C+ +CPvg+I+
  EGE27340.1 60 ERCVACNLCAVACPVGCIS 78
                89***************96 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 2.4e-11
                 EEETTTSSS-THHHHHSTTTEEE CS
        Fer4   2 videekCigCGaCvevCPvgAIt 24 
                  i+ ++C++CG C+e+CP+ AI+
  EGE27340.1  95 RINFSRCVFCGMCEEACPTTAIQ 117
                 599****************9995 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3  11.9   8.5e-15   9.5e-12       1      52 []      61     115 ..      61     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 8.5e-15
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgt...ekveidpekClgCgaCvavCPtga 52 
                 rC+ C+ C++aCpv++i+l+++e+e+g+   e  +i+ ++C++Cg+C+++CPt a
  EGE27340.1  61 RCVACNLCAVACPVGCISLQKAEREDGRwypEFFRINFSRCVFCGMCEEACPTTA 115
                 8***********************999866555699****************986 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.8   2.6e-06    0.0029       1      23 [.      61      83 ..      61      91 .. 0.85
   2 !   22.0   0.1     2e-07   0.00023       1      25 [.     100     124 ..     100     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.6e-06
     Fer4_16  1 rCgtCgkCaevCPtnaikekkek 23
                rC+ C+ Ca +CP+++i+ +k++
  EGE27340.1 61 RCVACNLCAVACPVGCISLQKAE 83
                6*****************99554 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 2e-07
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekei 25 
                 rC+ Cg C e+CPt ai+ + ++e+
  EGE27340.1 100 RCVFCGMCEEACPTTAIQLTPDFEL 124
                 6*****************9944443 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   4.1   6.5e-08   7.2e-05      38      58 ..      59      78 ..      49      79 .. 0.89
   2 !   16.6   0.1   5.5e-06    0.0062       2      25 ..      95     118 ..      94     136 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.5e-08
     Fer4_21 38 edeCvGCnlCssvCPvedcie 58
                +++Cv+CnlC+  CPv +ci+
  EGE27340.1 59 DERCVACNLCAVACPV-GCIS 78
                799************9.***7 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 5.5e-06
     Fer4_21   2 ridedkCigCgkCliaCedtshqa 25 
                 ri+ ++C+ Cg C  aC++t++q 
  EGE27340.1  95 RINFSRCVFCGMCEEACPTTAIQL 118
                 578889999999999999877774 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5  11.0   2.6e-10   2.9e-07       1      51 []      61     116 ..      61     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.6e-10
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase......eaCigCgaCveaCpkgai 51 
                 +C+ C+ C  aCp g ++ ++aer++  r++ e      ++C++Cg C+eaCp++ai
  EGE27340.1  61 RCVACNLCAVACPVGCISLQKAEREDG-RWYPEffrinfSRCVFCGMCEEACPTTAI 116
                 6**********************9977.4555589*******************987 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6  11.5     1e-09   1.2e-06       6      56 .]      59     112 ..      56     112 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1e-09
     Fer4_10   6 ddtCirCgkCvkaCPadl...tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 d++C+ C+ C  aCP+     ++ + ++ +++ e  r++ ++C +cg+C eaCP
  EGE27340.1  59 DERCVACNLCAVACPVGCislQKAEREDGRWYPEFFRINFSRCVFCGMCEEACP 112
                 689*************889999999999*************************9 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   4.7   3.1e-05     0.035       8      21 ..      60      73 ..      53      74 .. 0.88
   2 !   14.4   1.3   2.7e-05      0.03       4      22 .]      95     113 ..      92     113 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
      Fer4_2  8 drCigCgaCvsaCP 21
                +rC++C+ C  aCP
  EGE27340.1 60 ERCVACNLCAVACP 73
                69************ PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.7e-05
      Fer4_2   4 vvdtdrCigCgaCvsaCPa 22 
                  ++  rC+ Cg C  aCP+
  EGE27340.1  95 RINFSRCVFCGMCEEACPT 113
                 57899*************7 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   5.5    0.0014       1.6      49      64 ..      60      75 ..      45      76 .. 0.72
   2 !   14.4  15.1   3.4e-05     0.038       3      63 ..      60     113 ..      58     115 .. 0.83
   3 !   17.6   0.6   3.5e-06    0.0039       2      29 ..      98     127 ..      97     176 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0014
      Fer4_8 49 wsCttcgaCtevCpvg 64
                ++C++c+ C+++Cpvg
  EGE27340.1 60 ERCVACNLCAVACPVG 75
                4666666666666665 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.4e-05
      Fer4_8   3 ekCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpv 63 
                 e+C+ C +C  aCpv   + +      g+    +  + +      + +C+ cg+C+e+Cp+
  EGE27340.1  60 ERCVACNLCAVACPVGCISLQKAEREDGRWYP-EFFRIN------FSRCVFCGMCEEACPT 113
                 68************998888777777777666.555555......9**************7 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 3.5e-06
      Fer4_8   2 lekCieCgaCqsaCpvlrrtk..khlldar 29 
                 +++C+ Cg+C++aCp+   +   ++ l  +
  EGE27340.1  98 FSRCVFCGMCEEACPTTAIQLtpDFELGEY 127
                 689999999999999443332213333333 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   9.3    0.0003      0.34       7      24 .]      60      77 ..      59      77 .. 0.91
   2 !   16.1   1.2   7.5e-06    0.0084       7      23 ..      99     115 ..      93     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
      Fer4_6  7 dkCigCgdCvrvCPegai 24
                ++C+ C+ C+++CP g i
  EGE27340.1 60 ERCVACNLCAVACPVGCI 77
                89************9976 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 7.5e-06
      Fer4_6   7 dkCigCgdCvrvCPega 23 
                 ++C+ Cg C+ +CP+ a
  EGE27340.1  99 SRCVFCGMCEEACPTTA 115
                 79************855 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   4.1   0.00088      0.99      44      58 ..      60      74 ..      48      77 .. 0.87
   2 !   13.2   3.3   8.6e-05     0.096      42      58 ..      97     113 ..      76     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00088
     Fer4_17 44 slCieCgeCerkCPq 58
                ++C+ C++C+ +CP 
  EGE27340.1 60 ERCVACNLCAVACPV 74
                79************6 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8.6e-05
     Fer4_17  42 kaslCieCgeCerkCPq 58 
                 ++s+C+ Cg+Ce++CP 
  EGE27340.1  97 NFSRCVFCGMCEEACPT 113
                 789*************6 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   6.0    0.0017       1.9       2      17 .]      60      75 ..      59      78 .. 0.94
   2 !   13.2   1.5   8.6e-05     0.097       2      16 ..      99     113 ..      98     123 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0017
      Fer4_4  2 erCigCgsCvaaCPqg 17
                erC+ C  C  aCP+g
  EGE27340.1 60 ERCVACNLCAVACPVG 75
                89************86 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8.6e-05
      Fer4_4   2 erCigCgsCvaaCPq 16 
                 +rC+ Cg C+ aCP+
  EGE27340.1  99 SRCVFCGMCEEACPT 113
                 69************6 PP

>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.8     0.033        36      74     103 ..      61      90 ..      58      91 .. 0.89
   2 ?   12.2   2.0   0.00014      0.15      48      93 ..      70     119 ..      66     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.033
                 C--S--HHHHH-TT--EEE---STT-C--- CS
      ETF_QO  74 nCvhCktCdikdpsqniewvvPeGggGPky 103
                  Cv C+ C +  p   i+ +  e  +G  y
  EGE27340.1  61 RCVACNLCAVACPVGCISLQKAEREDGRWY 90 
                 7*****************999999988766 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00014
                 HH-TTS-EEEEETTT....TSSEEEEE-CCC--S--HHHHH-TT--EEE- CS
      ETF_QO  48 ryCPagvyeivedee....akekklqinaqnCvhCktCdikdpsqniewv 93 
                   CP g   + ++e        + ++in + Cv C  C+   p+  i+ +
  EGE27340.1  70 VACPVGCISLQKAERedgrWYPEFFRINFSRCVFCGMCEEACPTTAIQLT 119
                 5799999988887641111334679****************999999865 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.7    0.0029       3.2       2      17 ..      59      73 ..      51      78 .. 0.91
   2 ?    7.7   2.0    0.0045       5.1       2      18 ..      97     113 ..      96     115 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0029
     Fer4_13  2 DrdtCiacgaCvelaP 17
                D ++C+ac++C+ ++P
  EGE27340.1 59 D-ERCVACNLCAVACP 73
                5.89**********99 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0045
     Fer4_13   2 DrdtCiacgaCvelaPd 18 
                 + ++C+ cg C e++P 
  EGE27340.1  97 NFSRCVFCGMCEEACPT 113
                 5679************7 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.3    0.0085       9.6       1      23 [.      61      82 ..      61      97 .. 0.75
   2 ?    9.5   2.0    0.0015       1.7      78      94 ..      97     113 ..      79     115 .. 0.74
   3 ?    8.7   2.8    0.0029       3.2       1      18 [.     100     117 ..     100     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0085
     Fer4_22  1 rClsCgaCtlvCptCsCfdvede 23
                rC++C+ C+++Cp   C+++++ 
  EGE27340.1 61 RCVACNLCAVACPV-GCISLQKA 82
                7************7.34444443 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0015
     Fer4_22  78 gesgCvGCgRCieacpv 94 
                 + s Cv Cg C+eacp+
  EGE27340.1  97 NFSRCVFCGMCEEACPT 113
                 55667777777777765 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0029
     Fer4_22   1 rClsCgaCtlvCptCsCf 18 
                 rC+ Cg C  +Cpt    
  EGE27340.1 100 RCVFCGMCEEACPTTAIQ 117
                 699999999999997655 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  11.8     0.046        52       1      14 [.      62      75 ..      62      76 .. 0.94
   2 ?   11.3   5.6   0.00049      0.55       1      13 [.     101     113 ..     101     115 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.046
      Fer4_3  1 CtgCgaCvevCPvg 14
                C+ C++C ++CPvg
  EGE27340.1 62 CVACNLCAVACPVG 75
                999**********9 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00049
      Fer4_3   1 CtgCgaCvevCPv 13 
                 C+ Cg C+e+CP+
  EGE27340.1 101 CVFCGMCEEACPT 113
                 ************8 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5  12.5       1.3   1.4e+03      55      75 ..      56      76 ..      48     111 .. 0.77
   2 ?    6.4   1.3    0.0087       9.8      59      74 ..      99     114 ..      81     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.3
     Fer4_18 55 ekgagdcidcescvkvcPtgi 75
                 +g+  c++c+ c   cP+g 
  EGE27340.1 56 PDGDERCVACNLCAVACPVGC 76
                567788************983 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0087
     Fer4_18  59 gdcidcescvkvcPtg 74 
                 + c+ c++c + cPt 
  EGE27340.1  99 SRCVFCGMCEEACPTT 114
                 6799999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1305.64
//
Query:       EGE27341.1  [L=210]
Description: NADH-quinone oxidoreductase subunit J [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-30  105.5  19.3    2.6e-30  105.0  19.3    1.2  1  Oxidored_q3      NADH-ubiquinone/plastoquinone oxidoreductase
  ------ inclusion threshold ------
       0.41    8.8   7.8       0.54    8.4   7.8    1.1  1  YfhO             Bacterial membrane protein YfhO
        1.3    9.2  11.2       0.49   10.5   8.0    1.8  2  PIG-F            GPI biosynthesis protein family Pig-F
        2.3    8.0   0.0        2.3    8.0   0.0    2.7  2  IncD             Inclusion membrane protein D
        6.3    5.5  13.5        7.1    5.4  12.3    1.7  2  LptF_LptG        Lipopolysaccharide export system permease Lp


Domain annotation for each model (and alignments):
>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0  19.3   7.2e-34   2.6e-30       2     144 .]      28     171 ..      27     171 .. 0.91

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 7.2e-34
                  HHHHHH-SBHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHIIIIIHHHHHHHHHHHS..STTS----TTCHHHHHHHHHHHHHHHHHHHTT--... CS
  Oxidored_q3   2 allvitsknpvysalfLilsfvgvaglfillgaeFlallqilvYvGAilvlflFvimll..esaeeeepeslsrslalaalligllllallllllles 97 
                  +l v+t+ n v+++l++i+s+++vag+f++lga+F ++l i+vY+GAilvlf+Fvim+l   +++ ee+++l+ +++++ + +++++ a+l+ ++++ 
   EGE27341.1  28 SLRVVTHANAVHAILSMIVSLLAVAGIFFILGAPFAGILEIIVYAGAILVLFVFVIMMLnlGTDTTEEKTWLTANAWAMPVCLMMIVGAMLIGFIGYG 125
                  689********************************************************987778888888889999998999999999988888875 PP

                  ...--------TT-HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHC CS
  Oxidored_q3  98 sssavdaqvadvsnieaigsllftkyllpfelasllLLvaligaivl 144
                  + +   + ++d+ + + +g  lft y+l++e+a++lLL al++a +l
   EGE27341.1 126 TDQS-IQLQSDTISAKDVGVRLFTGYVLLVEVAAFLLLGALVAAYHL 171
                  5555.56678899******************************9875 PP

>> YfhO  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.8   0.00015      0.54     344     447 ..      18     126 ..      17     143 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00015
        YfhO 344 filsflllllaaealkelkqlkklkllaailllvlllliilllknkksynfltssqlllgllllllalllllllll..........kkkkkklvlllll 432
                 ++ls++ +++  +++++   +   + ++ +++++l++++i+++  + +  +l+   ++++  +l+l+++++++l l           + + +++ + l+
  EGE27341.1  18 YVLSLVAIWASLRVVTHANAV---HAILSMIVSLLAVAGIFFILGAPFAGILEI--IVYAGAILVLFVFVIMMLNLgtdtteektwLTANAWAMPVCLM 111
                 99**************99988...555556666666664444444555567765..888999999999999877779**99999955555555555555 PP

        YfhO 433 lvlvlelggnaylsl 447
                 +++   l+g   + +
  EGE27341.1 112 MIVGAMLIGFIGYGT 126
                 555444444443333 PP

>> PIG-F  GPI biosynthesis protein family Pig-F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.0   0.00014      0.49      54     140 ..      35     118 ..       7     125 .. 0.74
   2 ?   -0.9   0.1      0.44   1.6e+03      72      89 ..     153     170 ..     129     177 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
       PIG-F  54 skivlallsllltlllatlllaillvlfGApllthlleTlllalhlslltvlpllyvlgvdaeawkevvsleeplde.vlggllgtvv 140
                 ++ v+a+ls    ++++ l++a ++ ++GAp+   l+  ++  + l l++++ +++ lg+d+++ k  +++++ +   +l++++g+++
  EGE27341.1  35 ANAVHAILS----MIVSLLAVAGIFFILGAPFAGILEIIVYAGAILVLFVFVIMMLNLGTDTTEEKTWLTANAWAMPvCLMMIVGAML 118
                 444455555....555555888999999*********************************988777777765444424555555544 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.44
       PIG-F  72 lllaillvlfGApllthl 89 
                 l+ +++++l+GA +  ++
  EGE27341.1 153 LVEVAAFLLLGALVAAYH 170
                 444567788999987765 PP

>> IncD  Inclusion membrane protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   6.6      0.33   1.2e+03      39      69 ..      35      65 ..      22     109 .. 0.61
   2 ?    8.0   0.0   0.00065       2.3      73     107 ..     152     187 ..     138     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.33
        IncD 39 avavatila..vallvvagllfsgvlcspvsvl 69
                a av +il+  v+ll vag++f  +l +p + +
  EGE27341.1 35 ANAVHAILSmiVSLLAVAGIFF--ILGAPFAGI 65
                3455555532278899999887..455555433 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00065
        IncD  73 lffgvgafllggalvggv.ltteavtrerlhrsqtl 107
                 l++ v afll galv    l  +a+  e +  sqt 
  EGE27341.1 152 LLVEVAAFLLLGALVAAYhLGKKALDDENISHSQTC 187
                 7789***********875388999******999995 PP

>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  12.3     0.002       7.1     282     352 ..      52     119 ..      27     120 .. 0.72
   2 ?   -2.9   0.0      0.64   2.3e+03     104     127 ..     153     176 ..     144     201 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.002
   LptF_LptG 282 clvfaliaaplglvkrrggrglr...lliaillfvlyyvllslgkalaengvlppilaawlpnilflllglfll 352
                 + +f++++ap++ ++           +   ++lfv++ ++l+lg   +e+ ++  + a  +p +l++++g++l+
  EGE27341.1  52 AGIFFILGAPFAGIL------EIivyAGAILVLFVFVIMMLNLGTDTTEEKTWLTANAWAMPVCLMMIVGAMLI 119
                 335666666666666......33221444455666699999************99999999999*****99885 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.64
   LptF_LptG 104 llsvlsfllnnyvvPwankkaesl 127
                 l+ v +fll   +v   +   + l
  EGE27341.1 153 LVEVAAFLLLGALVAAYHLGKKAL 176
                 444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1401  (0.0781416); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 1489.14
//
Query:       EGE27342.1  [L=124]
Description: NADH-quinone oxidoreductase subunit K [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-20   71.0   7.6    6.5e-20   70.7   7.6    1.1  1  Oxidored_q2      NADH-ubiquinone/plastoquinone oxidoreductase
     0.0077   15.7   0.4     0.0077   15.7   0.4    2.3  3  ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
  ------ inclusion threshold ------
       0.68   10.0   2.3       0.92    9.6   2.3    1.3  1  DUF5392          Family of unknown function (DUF5392)
       0.77    9.8   6.7        7.5    6.6   6.7    2.1  1  NAD4L            NADH dehydrogenase subunit 4L (NAD4L)


Domain annotation for each model (and alignments):
>> Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   7.6   1.4e-23   6.5e-20       3     102 ..      32     118 ..      30     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 1.4e-23
                  HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHC.............TTSCGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-BC CS
  Oxidored_q2   3 llliallfliGlygvllrrnllkvliglelisnavnlllvlagvftegtlvitnpatefadplpqalvLtaivigaaetavgLallvrlyreygtddv 100
                  l+l+a+lf+iGl gv++rrn+l +l++le+++n++ l++v+ g+++             ++  +q++  ++++++aae+a+gLa+l++ y+  +++dv
   EGE27342.1  32 LILAAILFVIGLAGVMARRNVLFMLMSLEIMMNSAALAFVVGGNMW-------------GKADGQVMFVFILTLAAAEAAIGLAMLLQFYHRFRSLDV 116
                  6899*****************************************9.............9************************************** PP

                  CG CS
  Oxidored_q2 101 qe 102
                  ++
   EGE27342.1 117 NH 118
                  97 PP

>> ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4   1.7e-06    0.0077      16      36 ..      30      50 ..      29      51 .. 0.89
   2 ?   -0.5   0.1      0.19   8.3e+02      21      28 ..      66      73 ..      63      76 .. 0.88
   3 ?   -3.2   0.4       1.3     6e+03      20      33 ..      92     105 ..      90     105 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-06
                     HHHHHHHHHHHHHHHHHHCCH CS
  ATP1G1_PLM_MAT8 16 gGLifAglLfivGiliilSkk 36
                      GLi+A++Lf++G++ ++ ++
       EGE27342.1 30 HGLILAAILFVIGLAGVMARR 50
                     5*************9998775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.19
                     HHHHHHHH CS
  ATP1G1_PLM_MAT8 21 AglLfivG 28
                     A+l+f+vG
       EGE27342.1 66 AALAFVVG 73
                     99*****9 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.3
                      HHHHHHHHHHHHHH CS
  ATP1G1_PLM_MAT8  20 fAglLfivGiliil 33 
                      +A+   ++G++++l
       EGE27342.1  92 LAAAEAAIGLAMLL 105
                      56666678999886 PP

>> DUF5392  Family of unknown function (DUF5392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.3   0.00021      0.92      23      78 ..      47     106 ..      31     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00021
     DUF5392  23 llkKsskysfislPLllvslinlil....lllkaeleedsliaiilyallgAlGlAlfkE 78 
                 + ++ + ++++sl +++ s+   ++    ++ ka+ +  ++ ++ l+a+ +A+GlA++  
  EGE27342.1  47 MARRNVLFMLMSLEIMMNSAALAFVvggnMWGKADGQVMFVFILTLAAAEAAIGLAMLLQ 106
                 56888999999999988776544441233677777777788889999*********9865 PP

>> NAD4L  NADH dehydrogenase subunit 4L (NAD4L)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.7    0.0017       7.5       9      72 ..      38     105 ..      30     117 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0017
       NAD4L   9 vllilislllsltrllNlLiilE.nfNvllLlvcl...lvsvedsriiFivlmvlfvvEvsvgLvvvt 72 
                  ++i ++ +++  ++l +L+ lE  +N   L +++   +   +d +++F+ ++ l   E+ +gL ++ 
  EGE27342.1  38 LFVIGLAGVMARRNVLFMLMSLEiMMNSAALAFVVggnMWGKADGQVMFVFILTLAAAEAAIGLAMLL 105
                 3344444455555555555555422344445555511133446779******************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 947.86
//
Query:       EGE27343.1  [L=617]
Description: NADH dehydrogenase subunit L [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-86  289.6  27.5    2.4e-86  289.6  27.5    1.9  2  Proton_antipo_M  Proton-conducting membrane transporter
    3.3e-23   81.5   6.6      4e-23   81.2   1.6    3.3  2  Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), 


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.0      0.45   4.1e+03      20      71 ..      97     119 ..      83     131 .. 0.40
   2 !  289.6  27.5   2.7e-90   2.4e-86       1     293 []     133     426 ..     133     426 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.45
  Proton_antipo_M  20 lLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelska 71 
                      +Li l+ ++  + eA++  f+                             ++
       EGE27343.1  97 FLIHLFASWYMKGEAGFARFF-----------------------------SY 119
                      233333333333444433332.............................22 PP

  == domain 2  score: 289.6 bits;  conditional E-value: 2.7e-90
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskal..elglnslelllllllllvgl 92 
                      a++Lll+ylg+E+v++++ylLig+++++  + +A++k+f +t++g+++L +g++ll+ + gtl+++++   +   +++n ++lll+  +l+ g+
       EGE27343.1 133 ADNLLLMYLGWEGVGICSYLLIGFYYQNRANGRAAIKAFTVTRVGDVFLAIGLFLLFVVFGTLDMTAINAKAdaMFAVNDPMLLLIVAMLIGGA 226
                      79******************************************************************9998778889999************* PP

  Proton_antipo_M  93 lvKsaqvplhlWlpdayveaPtpvsall.AatlvkagvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGy 185
                        Ksaq+plh+Wl+da +++Ptpvsal+ Aat+v+agv+l++r+++l+    + + +++  ++++sml++s+ alaqtdiKr+lAyS++s+lGy
       EGE27343.1 227 FGKSAQIPLHTWLADA-MAGPTPVSALIhAATMVTAGVYLIARMHPLFVLTPQMLLYWVGGVGALSMLVASFCALAQTDIKRILAYSTMSQLGY 319
                      ****************.********************************8888899999*********************************** PP

  Proton_antipo_M 186 mlialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPpt.agFlskfliLeaavav 278
                      m+ial+v +  +++ ai+hl+tha+fkallFl++g+vi +++++++i+++ggL+ k+P++++ ++v+  +l++lP++  gF+sk +iL+  +a 
       EGE27343.1 320 MFIALGV-G--AWQVAIFHLMTHAFFKALLFLASGAVIVSTHHEQNIFKMGGLRHKIPLVFWSFVVGGGALVALPFVtVGFYSKEAILWETYAT 410
                      *******.5..55**************************************************************9769*************** PP

  Proton_antipo_M 279 slillvla.vvasvlt 293
                      +++ l  a v++++lt
       EGE27343.1 411 GHMGLFWAgVFGAFLT 426
                      *999999999999997 PP

>> Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   1.6   4.5e-27     4e-23       1      58 []      64     121 ..      64     121 .. 0.99
   2 ?    0.8   0.2     0.059   5.2e+02      23      37 ..     459     473 ..     458     474 .. 0.91

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 4.5e-27
  Proton_antipo_N   1 lftWlsvgglsieigfllDklsalmllvvtfvsllvhlYSigYMaddegyqRFfayls 58 
                      l+tWlsvg++  ++g++lD+ls++m+ v+t+v++l+hl++++YM+++ g++RFf+yl+
       EGE27343.1  64 LWTWLSVGDFAPKFGLYLDGLSVTMMGVITGVGFLIHLFASWYMKGEAGFARFFSYLN 121
                      7*******************************************************97 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.059
  Proton_antipo_N  23 almllvvtfvsllvh 37 
                      ++ ll+ t++++l+h
       EGE27343.1 459 VVLLLLSTGIGALIH 473
                      57899*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4559.07
//
Query:       EGE27344.1  [L=575]
Description: NADH dehydrogenase subunit M [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-68  231.7  28.2    1.1e-68  231.7  28.2    1.7  2  Proton_antipo_M  Proton-conducting membrane transporter


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.16   2.8e+03     255     267 ..      11      23 ..       8      54 .. 0.58
   2 !  231.7  28.2   5.9e-73   1.1e-68       1     292 [.     145     442 ..     145     443 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.16
  Proton_antipo_M 255 slaGlPptagFls 267
                      +l ++P+ agFl 
       EGE27344.1  11 ALIAIPLIAGFLC 23 
                      5667777777764 PP

  == domain 2  score: 231.7 bits;  conditional E-value: 5.9e-73
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkk....pksleAslklflltllgsliLLlgilll....ynltgtlefeelskalelglnslellllll 86 
                      a dL+l+++++El+llp+y+Li+lw+++    +++ +A+ k+f++t ++ li+L+gilll    +++tg l+f++  +    +l+ +e   ++l
       EGE27344.1 145 AIDLFLFFFFWELMLLPIYFLIALWGHNatggKSKEYAATKFFIYTQASGLIMLIGILLLviiqFSQTGVLSFDYHDLL-GVNLGDWEYA-IML 236
                      569**********************998333346889********************97655668999******99999.7777777765.567 PP

  Proton_antipo_M  87 lllvgllvKsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla.vssneisqlllilaiismllgslvalaqtdiKrllAySs 179
                       +++g++vK++ +plh Wlpda+ +aPt++s+ lA++l k ++++l+r++ +l+  +s + + + ++l++i++++g+++a aqtdiKrllAy s
       EGE27344.1 237 CFFIGFAVKLPIFPLHGWLPDAHAQAPTAGSVDLAGILIKTAAFGLLRFVIPLFpNASAQFAPVAITLGMIGVFYGAFLAFAQTDIKRLLAYTS 330
                      8899*********************************************9888889************************************** PP

  Proton_antipo_M 180 ishlGymlialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLe 273
                      +sh+G++++a+ ++t  +++++++++l+h+l++a+lF++ag++ yer +trd++ +gg++   + la  +++++ +l G+P+t +F++++liL 
       EGE27344.1 331 VSHMGFVVLAIYAGTLVSLQGLMVQMLAHGLSSAALFIMAGQI-YERLHTRDMTVMGGMWGQFRRLAPFMMFFCAALLGIPGTGNFIGEILILI 423
                      ****************************************887.9999********************************************** PP

  Proton_antipo_M 274 aavavslillvlavvasvl 292
                      +a+a+++i++ la+v+ v+
       EGE27344.1 424 GAFAIHPIFVTLATVSLVM 442
                      ************9777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4087.63
//
Query:       EGE27345.1  [L=492]
Description: NADH-quinone oxidoreductase subunit N [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-65  220.7  34.5    2.3e-65  220.7  34.5    2.2  2  Proton_antipo_M  Proton-conducting membrane transporter
     0.0043   16.9   1.6      0.019   14.8   1.6    2.1  1  DUF2897          Protein of unknown function (DUF2897)


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   4.8       1.7   1.5e+04     122     161 ..      15      52 ..       4      61 .. 0.56
   2 !  220.7  34.5   2.6e-69   2.3e-65       1     292 [.     126     428 ..     126     429 .. 0.95

  Alignments for each domain:
  == domain 1  score: -5.2 bits;  conditional E-value: 1.7
  Proton_antipo_M 122 atlvkagvlllirlllllavssneisqlllilaiismllg 161
                      a++v++ +l+++  + +  + s +++  l ++++  +ll+
       EGE27345.1  15 AVIVALTALIVM--ITIAVKRSHFWAATLSVVGLNMALLA 52 
                      444444444444..33333446666666666666555554 PP

  == domain 2  score: 220.7 bits;  conditional E-value: 2.6e-69
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskalelglnslelllllllllvgllv 94 
                      a +L++++++lEl ++p+y + ++++ + +sle++lk++++++ +s  LL+g++l+++ +gtl f++l+++l  g  s   +++ +++l+++++
       EGE27345.1 126 AAHLAAFFMSLELLSVPMYGMLAYTFLRSRSLESGLKYLIMSATASATLLMGMALIFADAGTLLFKDLARNLLIGNLSGLSVAGVVMMLAAAAF 219
                      679********************************************************************999999***************** PP

  Proton_antipo_M  95 KsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla..vssneisqlllilaiismllgslvalaqtdiKrllAySsishlGym 186
                      K++++p+h W+ d+y++aP+p+ a+lA+ ++k+++++l+ ++++ +  ++ ++ + +l++++++s+l+g+l+a++q++iKr+lAySsi+h+Gy 
       EGE27345.1 220 KLSAAPFHSWVSDVYEGAPAPIAAFLAS-VSKVAMMALALRFFVGSmfTAMPAFETILIVVIVLSILMGNLLAIRQNNIKRMLAYSSIAHIGYA 312
                      **************************66.9*******99888876656899******************************************* PP

  Proton_antipo_M 187 lialavatqygveaaiihllthalfkallFllagsviye.re........ktrdirayggLakkmPilalvllvlllslaGlPptagFlskfli 271
                      l al+  ++ ++ ++ +++ ++al++++ F ++  +++  re        +++d+r y+gL++++P+l +vl+v+llslaG+P+tagF+ kf+i
       EGE27345.1 313 LTALLSIGAGSLPLVSMYMAVYALTSIGAFGVITLMSSPyRErgrtsisgEADDLRFYQGLFWRRPVLTAVLTVMLLSLAGIPLTAGFVTKFTI 406
                      ******9***************************999885558999***99******************************************* PP

  Proton_antipo_M 272 Leaavavslillvla.vvasvl 292
                      + aav+ +++l++ + +++s++
       EGE27345.1 407 FFAAVQGMHFLAAGMiILGSAI 428
                      *******999988775666655 PP

>> DUF2897  Protein of unknown function (DUF2897)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.6   2.1e-06     0.019       4      25 ..     273     294 ..     271     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.1e-06
     DUF2897   4 evWlIiilVlgvIvGnlavLky 25 
                 e++lI+++Vl++  Gnl+++++
  EGE27345.1 273 ETILIVVIVLSILMGNLLAIRQ 294
                 789*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3520.91
//
Query:       EGE27346.1  [L=249]
Description: hybrid peroxiredoxin HyPrx5 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-33  113.6   0.0    1.1e-32  112.8   0.0    1.4  2  Redoxin        Redoxin
    3.1e-16   59.3   0.3    8.2e-16   58.0   0.0    1.9  2  Glutaredoxin   Glutaredoxin
    1.1e-12   48.0   0.0    2.3e-12   46.9   0.0    1.6  2  AhpC-TSA       AhpC/TSA family
    4.3e-05   23.8   0.0    7.9e-05   23.0   0.0    1.4  1  GST_N_3        Glutathione S-transferase, N-terminal domain
     0.0025   18.2   0.0     0.0053   17.1   0.0    1.6  1  DUF836         Glutaredoxin-like domain (DUF836)
  ------ inclusion threshold ------
       0.04   14.4   0.0        0.1   13.0   0.0    1.7  1  Thioredoxin_2  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.0   3.5e-36   1.1e-32       2     147 .]       7     161 ..       6     161 .. 0.89
   2 ?   -3.5   0.0       2.6   7.7e+03      53      75 ..     187     209 ..     182     221 .. 0.56

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 3.5e-36
                 TTSBB---ECCEETTCEE..EEEHHH.HTTSEEEEEEESTTT-HHHHHTHH.HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH..TT-TSEEEE-TT CS
     Redoxin   2 agdkaPdftlplaatdgn..svslse.fkgkkvvvnfvpgafcPtCsaehp.yleklaellkekgvdvvavvadndafvkefwgk..eglkfpvlsDgs 94 
                  g+k+P++++++  ++ +  +v+++e f gkkvvv+++pgaf+PtCs  h+   ++la+++k+ g+d + +v++nd+fv+++w++  e+ k++++ Dg+
  EGE27346.1   7 TGQKVPNAVFHT-RQGDQwvDVNTDElFSGKKVVVFSLPGAFTPTCSSTHLpRYNELADEFKKLGIDDILCVSVNDTFVMNAWADdqESDKITLIPDGN 104
                 5999***99866.5555412677788**************************99***9999**************************999********* PP

                 SHHHHHTT-TTEEE.GGG..EEE-EEEEEEETTEEEEEEESSSCHT...STTSHHHHH CS
     Redoxin  95 aaftkalGlrleedaseg..lrtpryavidedgkvvylevepepet...eesnaeavl 147
                 ++ft+ ++ rl  +   g   r++ry ++++dg++v+++ epe+ +   e+s+a++++
  EGE27346.1 105 GEFTEGMN-RLVSKEDLGfgKRSWRYSMLVDDGVIVKIFDEPEKDGdpfEVSDADTMI 161
                 ********.54444444468************************779*******9986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.6
                 THHHHHHCSTTTEEEEEESSSHH CS
     Redoxin  53 klaellkekgvdvvavvadndaf 75 
                 k +e lk++gv    vv   da 
  EGE27346.1 187 KAKEALKSHGVAYEEVVLGRDAS 209
                 44455555555544444444444 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.6   7.7e+03       1       9 [.      38      51 ..      38      52 .. 0.78
   2 !   58.0   0.0   2.7e-19   8.2e-16       1      60 []     174     232 ..     174     232 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.6
                  EEEEES.....TSS CS
  Glutaredoxin  1 vvlftk.....ptC 9 
                  vv+f+      ptC
    EGE27346.1 38 VVVFSLpgaftPTC 51
                  89999977777787 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 2.7e-19
                   EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin   1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgkhv 60 
                   v++ tkp+C +C+kak++Lk++gv++ee+ +  d +    +++++g  tvPqvf++gk +
    EGE27346.1 174 VTIITKPGCDFCAKAKEALKSHGVAYEEVVLGRD-ASMTSVRAITGHDTVPQVFVGGKRI 232
                   89*******************************9.999999****************976 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   7.8e-16   2.3e-12       2     117 ..       8     135 ..       7     142 .. 0.80
   2 ?   -1.9   0.0      0.99   2.9e+03      25      25 ..     170     170 ..     136     202 .. 0.55

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 7.8e-16
                 TSB----EEESTTC...EEEECHHH.TTSEEEEEEESTST-CCHH.HHHHHHHHCHHHCCCTTE.EEEEEESSSCHHHHHHHHH-H..SSEEEE-TTSH CS
    AhpC-TSA   2 gdkapdfelknadg...etvslsdy.kgkpvvlffypkdwcpvCt.telpalaklyeefkergv.evigvsvdspeshkkfiekes.lnfpllsDeegk 93 
                 g+k+p+    + +g    +v+ +++ +gk+vv+f  p++++p C  t+lp++++l++efk++g+ +++ vsv++ + +++++++++  +++l+ D +g+
  EGE27346.1   8 GQKVPNAVFHTRQGdqwVDVNTDELfSGKKVVVFSLPGAFTPTCSsTHLPRYNELADEFKKLGIdDILCVSVNDTFVMNAWADDQEsDKITLIPDGNGE 106
                 78888866664444111568888889******************6489****************88*****************9998899999999999 PP

                 HHHHTT-EETT.....TTECSCEEEEE-T CS
    AhpC-TSA  94 vakaygvlkee.....kglalratfvidk 117
                 + +  + l ++      +  +r + ++d+
  EGE27346.1 107 FTEGMNRLVSKedlgfGKRSWRYSMLVDD 135
                 88877766666666666666666666664 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.99
                 T CS
    AhpC-TSA  25 g 25 
                  
  EGE27346.1 170 E 170
                 2 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.6e-08   7.9e-05       3      68 ..     178     243 ..     176     246 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.6e-08
                 S-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEETTS-EEESHHHHHHHHH CS
     GST_N_3   3 gfpaSpyarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLeddgealtdSlaIidyLe 68 
                   p++ ++ ++++aL+  g+++e+v +  + +  +++a++++ +vP    +g+ + +S+++  yL 
  EGE27346.1 178 TKPGCDFCAKAKEALKSHGVAYEEVVLGRDASMTSVRAITGHDTVPQVFVGGKRIGGSEELETYLA 243
                 579*********************************************999999999999999986 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.8e-06    0.0053       2      57 ..     174     229 ..     173     242 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.8e-06
                 EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETTT-CCCHCCCCTTTTEEEECT CS
      DUF836   2 ltLyskpgChlCeqakekLkelkleegleleviDIakdeeleakYgleipvlaleg 57 
                 +t+++kpgC  C +ake+Lk  +++ +  ++ +D     +     ++++p++++ g
  EGE27346.1 174 VTIITKPGCDFCAKAKEALKSHGVAYEEVVLGRDASMTSVRAITGHDTVPQVFVGG 229
                 899*****************977777756666666655555556666666666655 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.5e-05       0.1       4      33 ..     169     197 ..     167     238 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.5e-05
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkelddv 33 
                    ++kp ++++t+p+C +C+k k+ lk+  +v
     EGE27346.1 169 EEKPSVTIITKPGCDFCAKAKEALKSH-GV 197
                    689****************99999887.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1791.70
//
Query:       EGE27347.1  [L=31]
Description: hypothetical protein EA1_03545 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      114  (0.00635841); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.27s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 234.92
//
Query:       EGE27348.1  [L=273]
Description: putative ferredoxin-NADP reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-13   49.3   0.0    1.2e-12   48.4   0.0    1.5  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    0.00039   20.6   0.0      0.044   13.9   0.0    2.2  2  NAD_binding_6  Ferric reductase NAD binding domain
     0.0071   16.7   0.0        0.1   13.0   0.0    2.2  1  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   2.1e-16   1.2e-12       1     108 [.     133     249 ..     133     250 .. 0.77

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.1e-16
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTT......EEEEEEEESSCTTTSSSEESSHHHHHHH.HHHH.. CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpg......rlkvvavvsreeagweggkgrvqdalle.ells.. 87 
                    ++a+GtG+aP++s+l+ + ++ +    +vlvy +rt+ +l+y++++ +la++  g      r+ +v++v+re+        r+   + + el    
     EGE27348.1 133 LLATGTGLAPFLSILQDLYAW-EYYDDIVLVYSARTQSELAYQDKIHSLATSFGGlvdnpaRFYYVPIVTREKFAG-CLSERIPSLINNgEL-Akt 225
                    79******************9.8789*************************9998888754555555544444332.344444444433222.246 PP

                    ...HSSTTEEEEEECSHHHHHHHH CS
  NAD_binding_1  88 ...lkkeethvyvCGppgMikavr 108
                         + ++hv++CG+p+M+++++
     EGE27348.1 226 agvALDTQSHVMLCGNPQMVEDTK 249
                    6687799**************986 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   7.4e-06     0.044       3      50 ..     130     172 ..     129     183 .. 0.83
   2 !    4.5   0.0    0.0057        34     134     153 ..     231     250 ..     218     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.4e-06
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   3 nvllvagGiGitpfisilkdllkkskkealktkkikliwvvresssle 50 
                    ++ l+a G+G++pf+sil+dl + +         i l+ + r +s+l 
     EGE27348.1 130 TLWLLATGTGLAPFLSILQDLYAWEY-----YDDIVLVYSARTQSELA 172
                    689******************99886.....77888888888888875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0057
                    xxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 134 nssvgvfvCGppklvkevkk 153
                    +++  v+ CG+p++v+++k+
     EGE27348.1 231 DTQSHVMLCGNPQMVEDTKE 250
                    566789**********9987 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.7e-05       0.1      46      90 ..      67     110 ..       6     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                    CEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEE CS
  FAD_binding_6  46 aviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtlei 90 
                     + R+Y+++ss+ ++ +le+   v+++G++++ L+ l+ gd+l +
     EGE27348.1  67 PIFRAYSVVSSPYDE-TLEFFSVVVADGEFTSQLQYLQAGDQLYL 110
                    579****99999765.688888899****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2139.49
//
Query:       EGE27349.1  [L=575]
Description: arginyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.7e-159  527.9   1.4   1.2e-158  527.6   1.4    1.1  1  tRNA-synt_1d     tRNA synthetases class I (R)
    1.8e-33  115.2   0.1    5.4e-33  113.7   0.1    1.9  1  DALR_1           DALR anticodon binding domain
    2.2e-20   73.0   0.6    2.2e-20   73.0   0.6    2.0  2  Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
     0.0014   18.1   0.2     0.0028   17.0   0.2    1.5  1  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
  ------ inclusion threshold ------
      0.027   12.7   0.0      0.038   12.2   0.0    1.2  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
      0.036   12.8   0.1       0.16   10.7   0.1    2.0  2  tRNA-synt_1g     tRNA synthetases class I (M)
       0.12   12.5   0.2          2    8.6   0.0    2.6  3  HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antit


Domain annotation for each model (and alignments):
>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  527.6   1.4  4.8e-162  1.2e-158      12     349 .]     105     446 ..      95     446 .. 0.98

  Alignments for each domain:
  == domain 1  score: 527.6 bits;  conditional E-value: 4.8e-162
                   T.---SST-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEEE--B-SSTCHHHHHHHHHHHTTTTTTS-----SCCCHHHHHHHHC CS
  tRNA-synt_1d  12 lqkksrekkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirlnhvGDWGtqfGlLiaylekkqdekllqeqelqdLeafykeakkdy 108
                   l++++ ++ +vvvd+ssPn+akemhvGhLrstiiGd+v+r+leflG  vir+nhvGDWGtqfG+Liaylek q++ + ++ +l+dLeafy+ ak+ y
    EGE27349.1 105 LGVNAAQNDTVVVDYSSPNVAKEMHVGHLRSTIIGDSVVRTLEFLGNTVIRANHVGDWGTQFGMLIAYLEKVQNDDV-KDLDLSDLEAFYRAAKHAY 200
                   3689999*********************************************************************5.59***************** PP

                   CCSHCCCHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHCT---EC...--CCCCCCCHHHHHHHHHCTT-EEECTTCEEEEECCC....T CS
  tRNA-synt_1d 109 deeeifaerarnyvvkLqsgdedirklwkllvditrtelqklydrldvtlie...rGeslykeslneivkelkkkglvkesdGalvvfldef....g 198
                   d +e fa+++rnyvvkLqsgde++ ++w++lvdit+ + q++ydrl+vtl++   +Gesly+++l++iv+ lk+kgl++e+dGa vvfldef    g
    EGE27349.1 201 DSDEAFAKKSRNYVVKLQSGDEYCLTMWRKLVDITMAQCQHTYDRLNVTLTRddtMGESLYNPMLPSIVQTLKDKGLAVEDDGAVVVFLDEFtnkaG 297
                   ***************************************************9********************************************* PP

                   SSCCEECC-TTS-B-HHHHHHHHHHHHHHTT--SEEEEEEECCCHHHHHHHHHHHHCTTSSTTTSEEEEEEE--EE-TTSSBSBCSSSTC-BHHHHH CS
  tRNA-synt_1d 199 krlgvvvqksDGgylytttDiaaakerkeelkadkvlyvidsrqslhlqqiflilkkigyvpeskdlehanfGmvlgkdkkkfktrkGetvkLadlL 295
                   +++gv++qk+DGgylytttDiaaa +r+++l+ad+v+ + d+rq lh qq++li++k+g+vp+ + +eh +fGm+lgkd+k+fktr+G+tvkLadlL
    EGE27349.1 298 DPMGVIIQKKDGGYLYTTTDIAAAAYRYHTLHADRVILFTDARQTLHAQQAWLITRKAGFVPDEFVMEHFTFGMMLGKDGKPFKTRTGGTVKLADLL 394
                   ************************************************************************************************* PP

                   HHHHHHHHHHHCCCCCCTS-CCCCHCHHHHHHHHHHHHCCCCTS-TTS-EE--H CS
  tRNA-synt_1d 296 dealeralqlikeknkdkvlqadelekvaeavgvgaikyaDlsknrindyifdw 349
                   dea+era++li++kn+d  l+a+e+ +v eav++ga+ky Dlsknr +dy+fdw
    EGE27349.1 395 DEAIERATTLIEQKNPD--LSAEEKRAVVEAVAIGAVKYSDLSKNRNTDYVFDW 446
                   *****************..**********************************9 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.1   2.1e-36   5.4e-33       1     119 []     460     575 .]     460     575 .] 0.94

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 2.1e-36
                 HHHHHHHHHHHHHHTTCTTCCCCHCCHCCS-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHHHHH CS
      DALR_1   1 vqyahaRiksilrkaeeegekleeealalleeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLvka 99 
                 +qya++Ri+si+ +a+ ++++  +e   + +e++e++L+ +l+qf+evl  +a++  ph l++yl+eLa  f++fY+++++l ++++++ ++RL+L+ +
  EGE27349.1 460 MQYAYTRIRSIFVRAGLDMADIGGEI-VI-HEDKERALAVKLLQFEEVLLLVAKDGMPHLLCQYLFELAGIFSSFYEACPILSSDDKTK-TSRLRLAAL 555
                 6************9998886554444.44.799******************************************************99.********* PP

                 HHHHHHHHHHHTT----S-- CS
      DALR_1 100 vrqvLangLdlLGieapekm 119
                 ++++L++gL+lLGi+++ekm
  EGE27349.1 556 TAKTLKQGLQLLGIKTVEKM 575
                 *******************9 PP

>> Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.6   8.5e-24   2.2e-20       3      85 .]       3      87 ..       1      87 [. 0.88
   2 ?   -2.8   0.1       3.9     1e+04       3      16 ..     390     409 ..     389     424 .. 0.57

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 8.5e-24
                     HHHHHHHHHHHHH...SS-HHHHGGG-E-.SSGGG-SEEEEGGGG--TT-..-HHHHHHHHHHT---TTTEEEEEEETT.EEEEEE CS
  Arg_tRNA_synt_N  3 lkeaiaealkkaa...gadleeeeiviekpknpkfGDyatnvamqlakklkknPreiAeeiaeklekseiiekvevagpGFiNffL 85
                     +++++++++kka    g + +e+e+ + ++++ +fGDy+ n +m  akkl+ nPre A+++ ++l+ ++i ek+e+agpGFiN+fL
       EGE27349.1  3 IQAILNDEIKKAMiaaG-AGSEVEALVRQSNKIQFGDYQANGIMGAAKKLGINPREFAQTVLDHLSIDDIAEKLEIAGPGFINIFL 87
                     66667777777766644.566669999999*******************************************************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.9
                      HHHHHHHHHHHHH......S CS
  Arg_tRNA_synt_N   3 lkeaiaealkkaa......g 16 
                      l++++ ea+++a+      +
       EGE27349.1 390 LADLLDEAIERATtlieqkN 409
                      56777888888854333330 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   1.1e-06    0.0028       6     129 ..     111     286 ..     106     305 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-06
                   BTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHH.HHHHHHTTS-.............................. CS
  tRNA-synt_1e   6 eekkvtlYvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDki.ikrareeeks.............................. 71 
                   ++++v +    p v  ++h+Gh Rs+++ D + r+l+ lg  v   + v D   +  ++ a  e+ +                              
    EGE27349.1 111 QNDTVVVDYSSPNVAKEMHVGHLRSTIIGDSVVRTLEFLGNTVIRANHVGDWGTQFgMLIAYLEKVQnddvkdldlsdleafyraakhaydsdeafa 207
                   56667777778999*************************************988753444544444457899************************* PP

                   ....................HHHHHHHHHHHHHHHHHHTT----SB--B.GGGGHHHHHHHHHHHHHTTSEEE-TTS-E CS
  tRNA-synt_1e  72 ....................vkelaekfieefkkdleaLnvlkptlepr.vsekvdeiielvekliekgyaYavsdgdv 129
                                       +++l++  +++ ++ ++ Lnv  +   +   s + + +  +v++l +kg a + +   v
    EGE27349.1 208 kksrnyvvklqsgdeycltmWRKLVDITMAQCQHTYDRLNVTLTRDDTMgESLYNPMLPSIVQTLKDKGLAVEDDGAVV 286
                   *****************************************8765555415567788999**********987764334 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.5e-05     0.038      22      71 ..     112     161 ..      90     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.5e-05
  tRNA-synt_1  22 kkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDh 71 
                  +++ ++    P+v  ++H+Gh   +++ d v+r+ ++ G++v +   +  
   EGE27349.1 112 NDTVVVDYSSPNVAKEMHVGHLRSTIIGDSVVRTLEFLGNTVIRANHVGD 161
                  5556667788*****************************99987665555 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.22   5.6e+02      51      73 ..      43      65 ..      37      84 .. 0.73
   2 ?   10.7   0.1   6.3e-05      0.16       8      85 ..     122     200 ..     115     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.22
                  HHHHHHHHTTS-HHHHHHHHHHH CS
  tRNA-synt_1g 51 pielkAekegvtpeelvekvhee 73
                   i+ +A+k g++p+e++++v ++
    EGE27349.1 43 GIMGAAKKLGINPREFAQTVLDH 65
                  58899***********9998544 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.3e-05
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHH.HHHHHHTTS-HHHHHHHHHHHHHHHHHHTT--- CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpi.elkAekegvtpeelvekvheeikelfkklnisf 85 
                   p +  ++H+Ghl+++i++D ++R     g+ v+       +Gt+  +l A  e+v+ +++ +   +  ++ ++  + ++
    EGE27349.1 122 PNVAKEMHVGHLRSTIIGDSVVRTLEFLGNTVIRANHVGDWGTQFgMLIAYLEKVQNDDVKDLDLSDLEAFYRAAKHAY 200
                   667889**************************99988888888864566777777776666655555555555555555 PP

>> HicB_lk_antitox  HicB_like antitoxin of bacterial toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.6   1.2e+04      60      95 ..      67     102 ..      60     105 .. 0.68
   2 ?    8.6   0.0   0.00077         2      60      98 ..     213     252 ..     179     255 .. 0.76
   3 ?    0.5   0.0      0.24     6e+02      22      48 ..     386     412 ..     384     439 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.6
  HicB_lk_antitox  60 sieellanpeyaggiwalvdvdlskldgkaeriNit 95 
                      si+++ ++ e+ag  ++ + ++ + ++++a++ Ni+
       EGE27349.1  67 SIDDIAEKLEIAGPGFINIFLKNEWISKHANQANIS 102
                      566667777777766666666777777777777775 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00077
  HicB_lk_antitox  60 sieellanpeyaggiw.alvdvdlskldgkaeriNitlpe 98 
                       + +l++ +ey   +w  lvd+ +++ +++  r+N+tl +
       EGE27349.1 213 YVVKLQSGDEYCLTMWrKLVDITMAQCQHTYDRLNVTLTR 252
                      4556677777877777369******************986 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.24
  HicB_lk_antitox  22 Gcfsagdtleeaianakeaielhlegl 48 
                      G    +d l+eai+ a+  ie    +l
       EGE27349.1 386 GTVKLADLLDEAIERATTLIEQKNPDL 412
                      67788999********99988765444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3999.42
//
Query:       EGE27350.1  [L=252]
Description: hypothetical protein EA1_03565 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-22   77.7   0.2    1.1e-21   77.2   0.2    1.2  1  DUF218    DUF218 domain


Domain annotation for each model (and alignments):
>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.2   6.2e-26   1.1e-21       3     130 ..      71     218 ..      69     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 6.2e-26
      DUF218   3 ivVLGaal...........pllaeRldeaaelyragk..iivsGggadedvseaeamaeylrelgvp.eeailledrsrnTeenarfskell....ker 83 
                 ivVLG +l             +++R+++a++l++ ++  ii+sG        e+ ++++yl+e+    +  i+ e++s+nT ena+f+++ll     ++
  EGE27350.1  71 IVVLGGGLtknsagtislnHFTQSRANAAIHLHKLYPlsIITSG-------AESPWLRDYLIEHIGRtKVVIINENASMNTCENAVFTAKLLshheLST 162
                 9***94444445566788888899************556****9.......599*********64443667888*********************7435 PP

      DUF218  84 sillVTsafHmpRalllfrkag.....aptpsaealsasee...s...alraalrEyl 130
                 +++lVT+ +Hm Ra++ f+kag     ap+p   a++ s++   +   ++r+ ++E++
  EGE27350.1 163 TVYLVTDRYHMARARRQFAKAGihtipAPAP--LAIRSSWQnpkDnliHTRRTIYELV 218
                 9********************9777443332..2222222222213567888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1989.20
//
Query:       EGE27351.1  [L=358]
Description: UDP-N-acetylenolpyruvoylglucosamine reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-29  102.6   0.0    2.2e-29  102.0   0.0    1.3  1  MurB_C         UDP-N-acetylenolpyruvoylglucosamine reductase,
    2.9e-15   56.2   0.0    5.2e-15   55.4   0.0    1.4  1  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
       0.17   12.3   0.2       0.57   10.6   0.0    2.0  2  CENP-S         CENP-S protein


Domain annotation for each model (and alignments):
>> MurB_C  UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   3.7e-33   2.2e-29       2     120 .]     226     351 ..     225     351 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 3.7e-33
                 HHHHHHHHHHHHSHCHSTTCTCEESESB---EESHHHHHHHH.......EEEETTSSEEE-HHHHHHHTT-TTSEETTEEEESSSTTEEEESS..S--H CS
      MurB_C   2 ireavlelrakklmvkqpldtpsaGSfFknPivegeeaeelk.......eyeaeegevklsagwLIeqaglkGlrvggaqvsekhalflvNgg..gata 91 
                 + +av+++r++kl   +p    ++GSfF+nPi+++e++++l         y  +++ vk++agwLI+qaglkG+ v ++  + k+al+l+N+    at+
  EGE27351.1 226 VYHAVIAIRQSKL--PDPKVLANCGSFFQNPIISTEHYQKLCvdypnlpCYLITKTLVKVPAGWLIDQAGLKGQGVPPILTHAKQALVLTNHMpfIATQ 322
                 889*********9..666666********************9*******99****************************************55489*** PP

                 HHHHHHHHHHHHHHHHHHS----BSSEEE CS
      MurB_C  92 adilalarevrkkVkekfgveLepEvvli 120
                 +di a a+ + + Vk+kf+++L +E+ +i
  EGE27351.1 323 EDIKATADVIIAAVKQKFNITLVREPAWI 351
                 **************************997 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   8.7e-19   5.2e-15      24     129 ..      51     151 ..      28     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 8.7e-19
                    TSCEEEESSSTTEE.STTCSCCEEEEEETT.S--.EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBHHHTTTTT-EETTEEGG CS
  FAD_binding_4  24 glpvlvrGgGssll.gqavatggvvldlsr.lnr.ileideeegtatveaGvtlgdlvealaakglllglepgsgipgtvGGaiatnagGygseky 116
                    + ++ v++gGs++l  + +   ++vl   r + r +l  d++e +++v+aG++++dlv  +  +++++gle++++ipg vG+a+++n+g+yg+++ 
     EGE27351.1  51 NNTWFVLSGGSNVLlPSRL--HTTVLLP-RmMGRrVLFEDDQEIILQVQAGENFHDLVTDC-VHKGWFGLENLALIPGLVGAAPVQNIGAYGVQLD 142
                    557889********77775..4555544.4265569999999*******************.********************************** PP

                    --HHGTEEEEEEE CS
  FAD_binding_4 117 Glirdnvlglevv 129
                        d++++++v 
     EGE27351.1 143 ----DVLVSVQVY 151
                    ....******996 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.5e-05      0.57      52      67 ..     212     227 ..     192     237 .. 0.82
   2 ?   -3.1   0.0       1.9   1.1e+04      20      33 ..     321     334 ..     306     339 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.5e-05
      CENP-S  52 FakHAkRstittdDvl 67 
                  a+H +R+t+tt Dv+
  EGE27351.1 212 LANHQGRTTVTTTDVY 227
                 478************8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
      CENP-S  20 aekeveatkqfiaa 33 
                 ++++++at ++i a
  EGE27351.1 321 TQEDIKATADVIIA 334
                 45566666666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2865.28
//
Query:       EGE27352.1  [L=164]
Description: phosphotyrosine protein phosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-31  109.8   0.0    1.6e-31  109.6   0.0    1.1  1  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0     9e-36   1.6e-31       1     139 [.       7     149 ..       7     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 9e-36
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCEEEEEEESTST.TT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHHCCT CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekagleekvevdSaGtgal.vgkradpravevlkekgislsghvarqlskeelaelDlilamdeenkreleslape 98 
                 +lfvClgNicRSp Aea++r++l++     +v  dSaGt ++ +g+++dpra+++ +  g++ls+ +arq+s e++ e+ li+amd++n+ +l++l+ +
  EGE27352.1   7 ILFVCLGNICRSPSAEAVMRAKLTN--FLPDVYLDSAGTAGYhIGNPPDPRAIATGESLGFELSQLRARQVSLEDFYEFELIFAMDDTNLSDLQTLKTT 103
                 89********************999..6777***************************************************************99998 PP

                 .TGGGGEEEGGGG....SSTSS---HTTSSHHHHHHHHHHHHHHHH CS
       LMWPc  99 .kekakvkllgey....teqldieDPyygeieafeevldeieeavk 139
                   ++a  + + +      e   ++DPyyg++++fe++++++++ ++
  EGE27352.1 104 aMMHANGRDMAKLslfdPEGRSVADPYYGDEQDFEQMYTHLQQIAD 149
                 733333333333333466999********************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1315.13
//
Query:       EGE27353.1  [L=133]
Description: heat shock protein 15 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   40.7   0.0    2.4e-10   40.0   0.0    1.4  1  S4        S4 domain
  ------ inclusion threshold ------
      0.016   15.0   0.5      0.037   13.8   0.2    1.8  2  HTH_8     Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   2.6e-14   2.4e-10       2      47 ..      10      54 ..       9      55 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 2.6e-14
                EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCE CS
          S4  2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDv 47
                R dk+l+++++  +r+ A+++Ie+G+V+ NG ++k  s ++++gD+
  EGE27353.1 10 RADKWLWAARFFRTRSLAKEAIEAGKVHMNGAKIK-VSKELQVGDT 54
                88*********************************.*********7 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.79   7.1e+03      18      30 ..      39      51 ..      37      52 .. 0.75
   2 ?   13.8   0.2   4.1e-06     0.037       6      26 ..      67      87 ..      64      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.79
                TT-HHHHHHHHTS CS
       HTH_8 18 gGnkskAArlLGi 30
                +G k k++++L +
  EGE27353.1 39 NGAKIKVSKELQV 51
                5778889999875 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.1e-06
                HHHHHHHHHHHTTT-HHHHHH CS
       HTH_8  6 EkelIeaALertgGnkskAAr 26
                Ek +I++AL +++Gn + AA 
  EGE27353.1 67 EKTIIIKALSENRGNATLAAT 87
                9******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1022.22
//
Query:       EGE27354.1  [L=47]
Description: hypothetical protein EA1_03595 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-10   40.1   0.1    2.3e-10   40.1   0.1    1.0  1  RE_NgoPII  NgoPII restriction endonuclease


Domain annotation for each model (and alignments):
>> RE_NgoPII  NgoPII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.1   1.3e-14   2.3e-10       2      45 ..       2      45 ..       1      47 [] 0.97

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 1.3e-14
   RE_NgoPII  2 nilkaiiniikeeiveikesyegknrvnslGeaLeefikDafan 45
                ni++ai ni+++ ++e+++  +g nr+n++G aLee++kD+fa+
  EGE27354.1  2 NIINAIFNIVTDFSYELTRDLHGLNRANQMGGALEEWVKDIFAK 45
                9*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 375.82
//
Query:       EGE27355.1  [L=513]
Description: threonine dehydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-71  241.0   0.4    2.4e-71  240.6   0.4    1.2  1  PALP            Pyridoxal-phosphate dependent enzyme
    7.5e-45  150.6   0.1    3.3e-21   74.8   0.0    2.4  2  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.6   0.4   2.6e-75   2.4e-71       5     294 .]      18     314 ..      14     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: 240.6 bits;  conditional E-value: 2.6e-75
                 SSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-E CS
        PALP   5 igpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGae 103
                 +  TPl ++ +lsk++   + lK+E+l+p  SfK+Rga++ +++l  ++++k++++as+GNh++++A+ a++lG+   i +p +++  kv++ +++G +
  EGE27355.1  18 AIHTPLEPATKLSKKFDNHIRLKREDLQPVFSFKLRGAYNKISQLSDAQKQKGIICASAGNHAQGVAYSANRLGINNLIIMPTTTPDIKVQAVKSFGGT 116
                 678*********************************************9************************************************** PP

                 EEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCC CS
        PALP 104 vvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarsl 202
                 v + g+++dea + a+  a+  +g++++ ++d+++vi+g+gtiglE+ +q+ +++d+v+ ++GgGgl+aG+aa+l e  p+++v++vepeg+++l ++l
  EGE27355.1 117 VYLHGDSFDEANRFAMHKAET-DGMTYIAPYDDELVIAGQGTIGLELTQQW-RNIDYVFIACGGGGLLAGVAAFLGEVAPHIKVVAVEPEGAACLKAAL 213
                 *********************.*************************9999.7********************************************** PP

                 S..S.SS..B.SSS.CCSTCSCGTTCCHHHH.....SEEEE.......EEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTCEEE CS
        PALP 203 ragrrvtvpvsdtiadglavgspselafell.....drlvd.......eivtvsdeealeamrllarregivvepssaaalaal.klreagelkegdrv 288
                 + ++rv++p  + +adg+av + +el  +++     d   +       eivt +++e+++a++   ++++ +ve ++a ++a++ k  +  +l+++ ++
  EGE27355.1 214 ASNKRVRLPQVSLFADGVAVAQIGELPYQIAklsksD---GsgtviepEIVTCTNDEICAAIKDIFEENRSIVETAGALSVAGMkKFIQTHNLSGK-NC 308
                 *********************9999999999775542...2456999*************************************************.** PP

                 EEEE-B CS
        PALP 289 vviltg 294
                 v+i++g
  EGE27355.1 309 VAIISG 314
                 ****98 PP

>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   3.7e-25   3.3e-21       1      91 []     327     419 ..     327     419 .. 0.92
   2 !   73.6   0.0   8.8e-25   7.9e-21       3      91 .]     425     512 ..     423     512 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 3.7e-25
                     HHHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   1 eraevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkage..kngkvLvgvevsqaeelde.lierleklgykvedlsknellkehl 91 
                     er e+ge++ea++av++pe+ Ga++ F+  l+grn iT+f+Yr  ++  ++++v+vg+ +++ ++    + + l k+gy+  dl+++e++k+h+
      EGE27355.1 327 ERTEIGEQKEAIFAVQLPEKTGAFLDFCRVLQGRN-ITEFNYRMDATnpNTAHVFVGIGLKEGQKERIlISDTLVKNGYTAYDLTDDEAAKTHI 419
                     899********************************.*******9776689***********998855415578******************997 PP

  == domain 2  score: 73.6 bits;  conditional E-value: 8.8e-25
                     HTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   3 aevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevsqaeeldelierleklgykvedlsknellkehl 91 
                     + ++ ++e+l+ v fpe+pGaL++Fle+lg+  +iTlf+Yr++g+ +g++Lvg + s+ +   ++ + l++ gy+++ l+++  ++ +l
      EGE27355.1 425 GHANLEDEQLFRVIFPERPGALLNFLEKLGQDFNITLFHYRNHGAAEGRILVGLQASHSNS-RQILDALTDIGYECQGLTEDVGYQLFL 512
                     667889***************************************************6555.******************998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3719.21
//
Query:       EGE27356.1  [L=249]
Description: hypothetical protein EA1_03605 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-96  320.7   0.8      6e-96  320.5   0.8    1.0  1  Transcrip_reg  Transcriptional regulator


Domain annotation for each model (and alignments):
>> Transcrip_reg  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.5   0.8  3.4e-100     6e-96       1     240 []       5     237 ..       5     237 .. 0.96

  Alignments for each domain:
  == domain 1  score: 320.5 bits;  conditional E-value: 3.4e-100
                    .XCHHCCCCCCHCCCCHHHHHHHHHHHHHHHHHTHH-S-GGG-HHHHHHHHHHHHTT--HHHHHHHHHHCCSTS.TS.--EEEEEEEEETTTEEEE CS
  Transcrip_reg   1 skWsnikhkKaandakkgklftklakeItvaakeeggpDpesNprLraaiekakkanvpkdnIeraIkkgagekseganyeevtyegygpggvavi 96 
                    skW+nikh+Ka++da+kgk+ftk+++eI+ aak+ g pDp++NprLra++eka++an++kd+I+raI++gag+ ++++n+ee+tyegyg ggvavi
     EGE27356.1   5 SKWANIKHRKAKQDAAKGKIFTKIIREIVSAAKS-GDPDPANNPRLRAVLEKANAANMTKDVIKRAIERGAGG-GDNDNMEEITYEGYGIGGVAVI 98 
                    8********************************6.*************************************7.47789***************** PP

                    EEEEES-HHHHHHHHHHHHHHTT-EEE-TTSSGGGEEEEEEEEEECCHCT-HHHHHHHHHHHHTESEEEEETTTC.EEEEEEGGGHHHHHHHHHHT CS
  Transcrip_reg  97 vealTdnknrtaaevrsifsknggnlgesgsvsflFerkgvivveekeeevdedelleaaieaGaeDveedeeeevievitepedlaavkkaLeea 192
                    ve++Tdn nrt+ evr++fsknggnlg+sgsv++lF+++g i++++      ed+++e+a+eaGaeD+e+  + e++ vit+p+d+ +v +aL +a
     EGE27356.1  99 VETMTDNVNRTVGEVRHAFSKNGGNLGTSGSVAYLFSKRGEIIFHD---LSLEDSIMEIALEAGAEDIEN--DGESLLVITSPADFGTVVDALIAA 189
                    ********************************************44...69******************8..667899****************99 PP

                    TT---SEEEEEEEESS-EE--.HHHHHHHHHHHHHHHTSTTEEEEEESE CS
  Transcrip_reg 193 gglevesaeleyipkeeveld.eeeaekleklidaLeeldDVqnvytNi 240
                    g l+++s+e++++p+++ ++d  ++a+k+ k+id+Le+ldDVq+vytN+
     EGE27356.1 190 G-LTPNSMEVTMSPSTTADIDnIDDAQKVLKMIDMLEDLDDVQEVYTNV 237
                    5.67****************846*************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.85
# Mc/sec: 887.33
//
Query:       EGE27357.1  [L=458]
Description: MiaB family tRNA modifying enzyme [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.1e-26   91.2   0.0    3.9e-25   89.2   0.0    2.1  2  Radical_SAM  Radical SAM superfamily
    3.1e-20   72.0   0.1      6e-20   71.1   0.1    1.5  1  UPF0004      Uncharacterized protein family UPF0004
    5.6e-20   71.3   1.0    5.5e-19   68.1   1.6    2.4  2  TRAM_2       TRAM domain
  ------ inclusion threshold ------
      0.029   14.1   0.0      0.055   13.3   0.0    1.4  1  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
      0.054   13.4   0.2       0.59   10.0   0.0    2.2  2  NTPase_1     NTPase


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.69   2.5e+03      96      96 ..      91      91 ..      50     141 .. 0.60
   2 !   89.2   0.0   1.1e-28   3.9e-25       2     167 .]     151     337 ..     150     337 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.69
                 H CS
                 x RF
  Radical_SAM 96 r 96
                 +
   EGE27357.1 91 K 91
                 1 PP

  == domain 2  score: 89.2 bits;  conditional E-value: 1.1e-28
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS.................TTHHHHHHHHHHTCCCTEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggeplly.................pdfvellerlaklavpgiritv 82 
                   +++gCn+rC+fC++p+    +g+  s++++++++e+ +l ++ gvke+++ +++ ++y                 ++f++  e+++kl   ++r+++
   EGE27357.1 151 KISEGCNHRCTFCIIPS---LRGDLVSRPIDSVMKEAVAL-KKSGVKELLVISQDTSAYgvdlkyktvfwegwplkSKFYDMCEAMSKLG-IWVRLHY 243
                  6899************8...9*******************.6999*******************************99999999999995.9****** PP

                  EECSSCHG......HHHHHHHHHTT..-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSHHHHHHHHHHH CS
                  xxxxxxxx......xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  83 etngtlpd......eeklerllelg..vdrvslgleaaddekvlklmnrghtfeevlealeklreagikr...vvdrivglpGendeeleellell 167
                  + +++++d       + + + + +g  + ++ ++ ++a++  vlk m+r+   e +le ++++r+  +++    ++++vg+pGe+de++e ll++l
   EGE27357.1 244 VYPYPHVDavvqimADSMTASAGMGglLPYLDIPFQHASPN-VLKAMKRPAMSENTLERIQAWRAI-CPDiviRSTFVVGFPGETDEDFEYLLDWL 337
                  *******7776655555555555559***************.************************.**************************996 PP

>> UPF0004  Uncharacterized protein family UPF0004
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.1   1.7e-23     6e-20       1      97 [.      11     103 ..      11     104 .. 0.91

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1.7e-23
                 XEEEE--S-CCCCHHHHHHHHHTTTSSS----SSS--SEEEEEE--SSSSHHHHTHHHHHHHHTTST.--EEEEEEHHHHS-HHHHHHH-TTS-EEE CS
     UPF0004   1 kvaietlGCqmNevdseelaslLkkegyelvedeeeAdvvlvnTCavrekaekkviqalrelkalkkpekkvvvlGCmaqrekeellkeepevdlvl 97 
                 k+ +++lGC +  vdse++++ L+ egy++++d + Ad+v+vnTC+++e+a +++++a++e+ +++    kv+v+GC+ +   e++ + +p v +v 
  EGE27357.1  11 KIGFVSLGCPKALVDSERIITELTYEGYQVANDYDGADLVVVNTCGFIESAVQESLDAIGEAINKN---GKVIVTGCLGKDA-EKIRTMHPAVLAVT 103
                 67799*********************************************************9988...69******98765.67888888777665 PP

>> TRAM_2  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.7   2.5e+03      42      59 ..     344     361 ..     336     362 .. 0.79
   2 !   68.1   1.6   1.5e-22   5.5e-19       1      62 [.     393     456 ..     393     457 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.7
                 ..T-EEEEEEEEEETTEE CS
      TRAM_2  42 kvGdfvkvkItdadeyDL 59 
                  vG f   +I++a   DL
  EGE27357.1 344 RVGCFTYSEIEGAVANDL 361
                 28***********99998 PP

  == domain 2  score: 68.1 bits;  conditional E-value: 1.5e-22
                 BTSEEEEEEEE..EETTEEEEEETTS-TTTS--EEEES---T...T-EEEEEEEEEETTEEEEE CS
      TRAM_2   1 iGktvevlvdg..eeeglyvGRsyadAPEvDgevyvtgaeklskvGdfvkvkItdadeyDLiGe 62 
                 +Gkt+ vlvd+   ee+++++RsyadAPE+Dg vyv++ + ++k Gd+ +v I++a++yDL++ 
  EGE27357.1 393 VGKTLVVLVDEidTEENIAICRSYADAPEIDGHVYVDNIDATVKAGDMLTVVIDEASDYDLFAS 456
                 9***********99999********************98877559****************996 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05     0.055      90     137 ..      37      82 ..      20     118 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
      CLP1_P  90 eveekleenkkakasgliIntpGwvkglgaellleliealep.dvvvvl 137
                  ++    +n+  +a+ +++nt+G+++++  e l ++ ea++    v+v+
  EGE27357.1  37 GYQ---VANDYDGADLVVVNTCGFIESAVQESLDAIGEAINKnGKVIVT 82 
                 444...233455899************************9974445554 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00017      0.59      89     131 ..      40      82 ..      21     105 .. 0.83
   2 ?    0.6   0.0      0.13   4.5e+02      66     104 ..     366     404 ..     343     411 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
                 HHHHHHHH-EEEE---STTGGG-HHHHHHHHHHHTTTSEEEEE CS
    NTPase_1  89 lrkalseadviviDEiGkmElkskkfkeaveevLksekpvlav 131
                 + + + +ad++v+  +G +E  +++  +a+ e+++++  v+++
  EGE27357.1  40 VANDYDGADLVVVNTCGFIESAVQESLDAIGEAINKNGKVIVT 82 
                 4455689****************************77777766 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.13
                 --SSEETTEEE-HHHHHHHHHHHHHHHHHHH-EEEE--- CS
    NTPase_1  66 kreprvgkyvvdvesfeelalealrkalseadviviDEi 104
                 +++++ ++y   +   +++ +e+l +++ ++ v+++DEi
  EGE27357.1 366 PESVKQSRYERLMALQQKISAEKLAEKVGKTLVVLVDEI 404
                 56677788888888888999999999999999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3481.29
//
Query:       EGE27358.1  [L=146]
Description: moraxella IgD binding protein/hemagglutinin MID/Hag, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.069   13.5   0.2       0.12   12.8   0.2    1.5  1  PCC_BT    Propionyl-coenzyme A carboxylase BT domain


Domain annotation for each model (and alignments):
>> PCC_BT  Propionyl-coenzyme A carboxylase BT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   6.5e-06      0.12      15      78 ..      66     143 ..      57     146 .] 0.56

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.5e-06
      PCC_BT  15 Rarqisnqlr........tkeakeekdwvvtv..dgedetvtvkve..eaad..evevkvdgksvkvssdwklgqpli 78 
                 Ra++i + l+        ++  +  ++++ +   dg+  t +v+++  ++++  +++v+vd+k+++v++d klg  + 
  EGE27358.1  66 RAASIGDVLNagfnlqgnGEAVDFVSTYDTVNfaDGNATTAKVTYDdtKQTStvTYDVNVDNKTLEVTGDKKLGVKTT 143
                 5555555555554322223333444444432122444455677775333322347999************99997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1125.97
//
Query:       EGE27359.1  [L=61]
Description: moraxella IgD binding protein/hemagglutinin MID/Hag, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 485.40
//
Query:       EGE27360.1  [L=242]
Description: moraxella IgD binding protein/hemagglutinin MID/Hag, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.062   13.7   3.4      0.077   13.4   2.5    1.6  2  AvrM-A    Flax-rust effector AvrM-A


Domain annotation for each model (and alignments):
>> AvrM-A  Flax-rust effector AvrM-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.5   4.3e-06     0.077      59     132 ..      52     131 ..      31     136 .. 0.76
   2 ?   -2.4   0.0      0.32   5.8e+03      73      95 ..     154     176 ..     150     209 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-06
      AvrM-A  59 kkgekklkkkidviaeklkekakakgkpidekavq...rqfi.KeqaklylkdeelkkavvalKelEKsvr..nakneAl 132
                 k +++k ++ +d+  e  k+k+ a+++ +d + +q   + +i Keq +   k+++++++   +K lEK     ++kn A+
  EGE27360.1  52 KYYQAKNDGTVDKTKEVAKDKLVAQAQTPDGTLAQmnvKSVInKEQVNDANKKQGINEDNAFVKGLEKAASdnKTKNAAV 131
                 3456777777888888888888888898998877666766664788888899****************876115666665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.32
      AvrM-A  73 aeklkekakakgkpidekavqrq 95 
                 a+kl e ++ kg ++d  +   +
  EGE27360.1 154 AKKLGETLTIKGGQTDTNKLTDN 176
                 57777888888877777766544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1782.99
//
Query:       EGE27361.1  [L=219]
Description: putative nitroreductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-28   97.6   0.0    1.3e-27   96.9   0.0    1.3  1  Nitroreductase  Nitroreductase family
    1.1e-05   25.1   0.0      0.026   14.1   0.0    2.8  3  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   0.0   1.5e-31   1.3e-27       3     170 .]      15     198 ..      14     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 1.5e-31
                     H--B---B-S--.--HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGG................... CS
  Nitroreductase   3 kRrSiRkFddep.vpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrke................... 77 
                      R S+R +d ++ +p+e++ +ile +r +Ps+ +++pw+f+v+q+ +lr+kl++++++  + ++ +   a   +k                    
      EGE27361.1  15 YRVSTRSYDGDKkIPAEDFNYILELGRLSPSSVGSEPWQFLVLQNADLRQKLKPYCWGIPTMETSSHIVAIPAKKNarydtpyfgeimdrrglmg 109
                     599******************************************************999988777766665544489999*****999888888 PP

                     ..HHHHHHHHHHHHSSEEEEE---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S.......SEEEEE CS
  Nitroreductase  78 ..elklkaqkalagapvlivivatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglp.....deeeivvl 165
                       ++k+++ +  ++ + + ++         +++++ y++a +++++a+ n+++ A+++G++scpi+gf +++  v++ll  +     +e+ + v+
      EGE27361.1 110 ddRAKALEVYQKFQEQDIAIL---------DSERSLYDWASKQTYIALANMMTGAAMIGVDSCPIEGFAYKE--VNQLLADEglfdpNEWAVSVM 193
                     888888888888888888888.........******************************************..*****6666667555666699 PP

                     EEEE- CS
  Nitroreductase 166 iavGy 170
                     +++Gy
      EGE27361.1 194 VTFGY 198
                     99998 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.042   3.7e+02       2      21 ..       9      29 ..       8      31 .. 0.80
   2 !   14.1   0.0   2.9e-06     0.026     157     187 ..      30      60 ..      17      78 .. 0.84
   3 !    7.8   0.0   0.00024       2.1     124     151 ..     190     217 ..     159     219 .] 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.042
                    HHHHHHH--B---B-.-S--- CS
  TM1586_NiRdase  2 lyeaiekRhsvRkYk.deale 21
                    +++a + R+s R+Y+ d++++
      EGE27361.1  9 VLNAFHYRVSTRSYDgDKKIP 29
                    5678899*******9777776 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.9e-06
                     -HHHHHHHHHHHTS--GGG----EEE.E-SS CS
  TM1586_NiRdase 157 pewfkeileaarlAPsAlNqqpwrfelkddd 187
                      e+f+ ile+ rl+Ps++ + pw+f + ++ 
      EGE27361.1  30 AEDFNYILELGRLSPSSVGSEPWQFLVLQNA 60 
                     589**********************877665 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00024
                     -S-EEEEE-BS----.-----HHHHBSS CS
  TM1586_NiRdase 124 lvivIalGyaktklveakrkpleelcev 151
                     + +++++Gy +++++++ rk++e+++++
      EGE27361.1 190 VSVMVTFGYRDKEIKPKARKTFEQVVKF 217
                     5689*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1733.27
//
Query:       EGE27362.1  [L=353]
Description: NADPH dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-73  248.3   0.0    1.8e-73  247.8   0.0    1.2  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
     0.0066   15.6   0.1      0.029   13.5   0.0    2.1  3  Dus           Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.8   0.0     2e-77   1.8e-73       2     339 ..       7     333 ..       6     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: 247.8 bits;  conditional E-value: 2e-77
                   CCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEEE CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvvv 98 
                   + +Pi ++n +LknRivm+pm++++a+d g v++d+ + +y+ ra ++v+lii+e+++v ++++++ n  g+w++eq ++++kl++ vh++g+k+++
    EGE27362.1   7 ILNPISLKNLELKNRIVMPPMCQYSATD-G-VPNDWHLLHYTSRAVGGVGLIIVEMTNVAANGRITANCLGLWNDEQEQAFKKLVDSVHAQGAKIGI 101
                   679*********************9986.5.7***************************************************************** PP

                   EEE--GGGS..SCSTCEC..SS.ESSSSSTTT-.S...CS.-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----STT CS
  Oxidored_FMN  99 qlwhlGreakseyladqevdspsdpvaldaqeeesaeevy.kkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtDey 194
                   q++h+Gr+a++e +a +   s++   +ld +    +++++ +++l+ +eik l+q+f++  kra++AgfD +e h+a+GYL++qF  pksn+r+Dey
    EGE27362.1 102 QIAHAGRKAQDEPNAVAP--SAIHYGELDYA----GQNLItPRQLSIDEIKALVQAFADSVKRAVNAGFDAIELHAAHGYLIHQFCAPKSNQRSDEY 192
                   *********999888888..88855555555....66777799****************************************************** PP

                   SSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--H...HHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTT.HHHHH CS
  Oxidored_FMN 195 gGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldf...aetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqe.kntef 286
                   g   ++R+ F   v+ aV+ ++  e+ +++R+S++++ e+g d+   +e a+ +  +++   ++  g  + l + + p  +        ++   + +
    EGE27362.1 193 G---QDRLLFGEQVIHAVRAVMPDEMpLIVRISAQEYGENGFDSdygVEIAKRFSSAGADVFHVSGGGDGVLCEGKHPEFYAG------YQvALARK 280
                   9...78*******************************9999886111444444444444444444444444445554444444......4445569* PP

                   HCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCT CS
  Oxidored_FMN 287 vkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkgl 339
                   vk    kp+i+vg+ +d+ +a+ ++  g+adLva+gR +l+dp +v  ++++ 
    EGE27362.1 281 VKYATGKPVIAVGMLDDPAVADHVLGVGDADLVAIGRGLLRDPYWVLNAQYQQ 333
                   **********************************************9999876 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.13   1.1e+03     206     221 ..     100     115 ..      58     163 .. 0.62
   2 ?   -2.1   0.0      0.17   1.5e+03     140     159 ..     152     171 ..     135     173 .. 0.72
   3 !   13.5   0.0   3.3e-06     0.029     137     237 ..     233     340 ..     194     350 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.13
                 --SEEEESCHHCCSTT CS
         Dus 206 GadgvmigrgalgnPw 221
                 G++   +gr a+ +P+
  EGE27362.1 100 GIQIAHAGRKAQDEPN 115
                 3333333444444444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.17
                 HHHHHHHHHHCT-SEEEEES CS
         Dus 140 alelakiveaaGaqaltvHg 159
                   + +k++ +aG +a+ +H+
  EGE27362.1 152 FADSVKRAVNAGFDAIELHA 171
                 45667778888888888886 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 3.3e-06
                 TC.HHHHHHHHHHCT-SEEEEESS.......ECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHH CS
         Dus 137 eenalelakiveaaGaqaltvHgR.......traqnyegtadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfaesta 228
                 ++  +e+ak+ + aGa+ + v g         +  ++ +  + +  ++vk a   pvia G   d+  a+++l    ad v igrg l++P+ + + ++
  EGE27362.1 233 SDYGVEIAKRFSSAGADVFHVSGGgdgvlceGKHPEFYAGYQVALARKVKYATGKPVIAVGMLDDPAVADHVLGVGDADLVAIGRGLLRDPYWVLNAQY 331
                 3446889999999999999999987776654222222223344455788888889************************************76654444 PP

                 HHHSC---- CS
         Dus 229 vktgeaepa 237
                  ++ +++++
  EGE27362.1 332 QQNRSDGKE 340
                 444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2575.22
//
Query:       EGE27363.1  [L=305]
Description: LysR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-28   99.6   0.2    1.9e-28   99.3   0.2    1.1  1  LysR_substrate  LysR substrate binding domain
      2e-15   56.5   0.0    3.7e-15   55.6   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.2   2.1e-32   1.9e-28       4     207 ..      95     295 ..      92     297 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 2.1e-32
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                     l+ +Lriga +++ + +  pl+ r+r++ P+v++ l   + +++  l +++ +Dla+++++  ++++   +L+ee++v+v+s+ hp a+   ++l
      EGE27363.1  95 LSMTLRIGAMDYVQQIIALPLILRLRRLAPNVKVALLPVQGQNIKTLFDKNAIDLALVGQHHISDDMPQMRLYEEHYVCVMSKMHPMANT-ALTL 188
                     6889**********************************************************************************9998.889* PP

                     GGGCTSEEEEESTTST.HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTC CS
  LysR_substrate  99 edLadeplilleegsg.lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgr 191
                     +++ ++p+ +l+ + g +r + + al++ g+k++v+++v++++ l +l ++ + +a+lp++++++    +++  l+ p+ ++  +++ + ++++ 
      EGE27363.1 189 DEFCKLPFAMLSYNGGeFRGATDIALQKLGRKRKVMVSVDHISLLPQLLSNSDLVAVLPKHLAQR---LPNVH-LQNPPIAIDgFTIMMTWHERT 279
                     ***********999999**********************************************99...77788.888888*************** PP

                     CCHHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflrea 207
                     e++ a r+++ +++++
      EGE27363.1 280 EQDMAHRWLRSIVLDV 295
                     **********999876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   4.1e-19   3.7e-15       1      59 [.       9      67 ..       9      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 4.1e-19
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l++l++fv + +e +++r A++L ++qpa+s  ++rL+e +++pLf+R ++g+++T+++
  EGE27363.1  9 LNLLKAFVVLLDECNVSRSAQRLSITQPAMSGILNRLRESFNDPLFVRVQHGMQPTDRA 67
                789*****************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2268.14
//
Query:       EGE27364.1  [L=103]
Description: 50S ribosomal protein L21 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-39  131.8   6.1      1e-38  131.6   6.1    1.0  1  Ribosomal_L21p  Ribosomal prokaryotic L21 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L21p  Ribosomal prokaryotic L21 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   6.1   5.7e-43     1e-38       1     101 []       1     101 [.       1     101 [. 0.99

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 5.7e-43
                     XEEEEECSTEEEEESSSEEEEEESSSSSTTCEEEESSEEE....EE.ECTSSSESSTCEEEEEEEEEE---EEEEEEETTTTEEEEEEE--EEEE CS
  Ribosomal_L21p   1 myAiietgGkqykVeegdvlkvekleaevgdkveldkVllvgskddvkvGaplvegakVeaevvehgkgkkiivfkkkrrknyrrkqghRqkytk 95 
                     myA+i+ gGkq++V+ g++lkve l+ae+g+++++++Vl+v +  ++k+G+p+v ga+Veaevvehg+gkk++++k++rrk+y++ qghRq++t+
      EGE27364.1   1 MYAVIKSGGKQHRVSVGETLKVELLKAEKGETLKIEEVLMVVDGAEIKIGSPVVTGASVEAEVVEHGRGKKVRIVKHRRRKHYHKEQGHRQWFTE 95 
                     9********************************************************************************************** PP

                     EEEEEE CS
  Ribosomal_L21p  96 lrItkI 101
                     l+I++I
      EGE27364.1  96 LKIKAI 101
                     ***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 780.00
//
Query:       EGE27365.1  [L=85]
Description: 50S ribosomal protein L27 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-38  131.0   2.0    1.3e-38  130.8   2.0    1.0  1  Ribosomal_L27  Ribosomal L27 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L27  Ribosomal L27 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   2.0   7.5e-43   1.3e-38       1      79 []       2      82 ..       2      82 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 7.5e-43
  Ribosomal_L27  1 AhkkagGstkngrdskgkrlGvKkfggqlvkagnIivrQrgtkfhpGenvgiGkdhtlfAlvdGvVkfek..kkkrkyvsv 79
                   Ahkka+Gst+ngrds++k+lGvK+fggq v agnIivrQrgt+fh+Ge vg+G+dhtlfAl++GvVkfe+  + +r+yvsv
     EGE27365.1  2 AHKKAAGSTRNGRDSNPKMLGVKVFGGQDVVAGNIIVRQRGTEFHAGEGVGMGRDHTLFALTEGVVKFETkgQFNRRYVSV 82
                   9********************************************************************435779****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 688.32
//
Query:       EGE27366.1  [L=214]
Description: putative signal peptide containing protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-33  115.5   0.2    3.7e-33  115.3   0.2    1.0  1  DUF2057         Uncharacterized protein conserved in bacteria
  ------ inclusion threshold ------
      0.053   14.4   2.2      0.085   13.7   2.2    1.2  1  Nucleoporin_FG  Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> DUF2057  Uncharacterized protein conserved in bacteria (DUF2057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.2   4.1e-37   3.7e-33       1     193 []      23     211 ..      23     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 4.1e-37
     DUF2057   1 tLkvpdniellavdgqkvksslfkga.ksltLtpGkhqivvrykdlfkddsdsdsqdlvkSdplivtfdakadqeltlelpklen.erqakafakspki 97 
                 +L+v+dni++ a++gq ++++l+++  +++tL+pG h i++ry++lfk +   d++d++kS  +++t + +++q+++l +p++++ +++ak ++k+p++
  EGE27366.1  23 QLNVDDNIKVTAINGQAIHHGLLQPLqQNFTLEPGRHVITARYDRLFKLGR--DDHDYLKSGDITITANLADHQTYRLIMPNQPKdYHAAKDYIKTPSL 119
                 699********************************************5554..5779************************98888************* PP

     DUF2057  98 tltdksgksveakqdklk.kegfqlgrdyeqelaeynrsgaaaaaataatataataavaaaaskssataqgqnqaeqm......LqywylqAdketrke 189
                 ++t++     + +++++k    f  +++  ++   ++r+++a+         +a++++ aa s+ +++++++n+a +       +++++l+A++e+r++
  EGE27366.1 120 AITQHGAIITQEDTTQTKrSGLFGGITSTINN--LFGRTNSAT---------TANQEAIAAISTYNTAKPTDNHAVRAddnldgFMQIWLNASDEEREK 207
                 ****7777788888888855555555555555..556666666.........234444444444444444444444422223339************** PP

     DUF2057 190 FlkW 193
                  ++W
  EGE27366.1 208 IRQW 211
                 **** PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.2   9.4e-06     0.085       6      69 ..     133     164 ..     118     183 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.4e-06
  Nucleoporin_FG   6 aatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta 69 
                     +++++ +g                              lfg+   t++ ++lFG tn++t++++
      EGE27366.1 133 TTQTKRSG------------------------------LFGG--ITSTINNLFGRTNSATTANQ 164
                     22333333..............................5555..44555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1549.35
//
Query:       EGE27367.1  [L=254]
Description: DnaA family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-16   59.2   0.6    2.5e-15   56.9   0.6    1.9  1  Bac_DnaA         Bacterial dnaA  protein
    9.5e-09   35.2   0.2      2e-08   34.2   0.2    1.5  1  IstB_IS21        IstB-like ATP binding protein
    0.00033   20.4   0.0    0.00058   19.6   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
    0.00033   21.1   1.3     0.0014   19.1   1.3    2.1  1  AAA_16           AAA ATPase domain
     0.0083   15.3   0.0      0.011   14.9   0.0    1.3  1  NB-ARC           NB-ARC domain
       0.01   16.1   0.6        1.2    9.5   0.0    2.4  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.012   15.6   0.1      0.037   14.0   0.0    2.0  2  NACHT            NACHT domain
      0.014   15.9   0.1      0.029   14.9   0.1    1.8  1  ABC_tran         ABC transporter
       0.02   15.3   0.0      0.042   14.3   0.0    1.6  1  AAA              ATPase family associated with various cellul
      0.023   14.9   0.0      0.034   14.4   0.0    1.3  1  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.045   12.9   0.1       0.21   10.7   0.0    2.0  2  PIF1             PIF1-like helicase
      0.061   13.4   0.2       0.17   12.0   0.0    1.8  2  AAA_14           AAA domain
      0.072   13.0   0.3        8.1    6.3   0.0    3.0  3  ATPase_2         ATPase domain predominantly from Archaea
       0.08   13.3   0.3        6.7    7.0   0.0    2.3  2  AAA_19           AAA domain
       0.08   12.2   0.0       0.13   11.5   0.0    1.3  1  Zeta_toxin       Zeta toxin
       0.14   12.6   0.0       0.29   11.5   0.0    1.5  1  RNA_helicase     RNA helicase
       0.16   11.7   0.0       0.66    9.7   0.0    2.0  1  AAA_30           AAA domain


Domain annotation for each model (and alignments):
>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.6   2.3e-18   2.5e-15      33     208 ..      41     209 ..      29     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 2.3e-18
                 .S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-SEEEEE-GGGGTT-HHHHHHHHHHHHHHHTTT- CS
    Bac_DnaA  33 kynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkvDvLliDDiqflagkektqeelfhtfnalleegk 131
                 +   lfi g++G+GktHL  ai  + ++ ++++ ++ l       +l + ++++  ++    l   D++++DD+q + +  + qe lfh++n l e++k
  EGE27367.1  41 SLRELFIVGDSGFGKTHLASAIYEHYTSMTSKMVIS-L-------NLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQK 131
                 56679*****************99888777665443.3.......344455555555556788999********************************* PP

                 EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-.----HHHHHHHHHHHHHHTT----TTHHHHHHHH--S-HHHHHHH CS
    Bac_DnaA 132 qvvlssDrsPkeleeledrlrsrfeaGlvvdi.eppdletrlailkkkieaeklevpeevlefiaervtdnvRelega 208
                 q++  +D + +el+     l++r++   +  + ++ d + r  +++  +++++ ++pee++ ++ e+  +n  ++++ 
  EGE27367.1 132 QILYLADDPARELQIGLLDLHTRLSLAPMLTLpDNDDINDRRILIEVILKKKNWKLPEEIFDYLLEEGPRNAGDINTI 209
                 *************9888889****9987777725567899999999999**************998877777776665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.2   1.9e-11     2e-08      49     144 ..      44     133 ..      11     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.9e-11
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdlgllpldqaeaellfeviekryerrsii 144
                  + ++G sG GK+hla a+  +          ++   +  +l    +++  a+al  l ++dl+i+Ddl ++  + + +e lf++i++  e++  i
  EGE27367.1  44 ELFIVGDSGFGKTHLASAIYEHYTSM------TSKMVISLNLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQI 133
                 5789*************997654442......2222233344444467788999**********************************99998766 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.5e-07   0.00058       5      62 ..      24      83 ..      22      98 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.5e-07
                     SHHHHHHHHHHHHHCTSS.S-EEEECSTTSSHHHHHHHHHHHSTT.TTS-EEEEETTTS- CS
  Sigma54_activat  5 sealkelleqikkvaktd.lsvlitGesGtGKellaraiheaskr.kekpfvavncaaip 62
                     s++ + +l+ i+k+++ +  +++i+G+sG GK+ la+ai+e+ +  ++k ++++n +++ 
       EGE27367.1 24 SSSYRPILDAIDKLVQGSlRELFIVGDSGFGKTHLASAIYEHYTSmTSKMVISLNLTELI 83
                     56667778888888888746789*****************96554167778899988764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   1.3   1.3e-06    0.0014      12      51 ..      30      69 ..      25     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.3e-06
      AAA_16 12 LlsalervrsgrpelvllsGesGvGKsslvrellralekd 51
                +l+a++++ +g+ + ++++G+sG GK+ l+ +++++++  
  EGE27367.1 30 ILDAIDKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSM 69
                7899******************************988765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05     0.011       9      49 ..      34      71 ..      28     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
                HHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCC CS
      NB-ARC  9 iekLlekdelqslvvalvGmgGvGKttlakqilnksdeveg 49
                i+kL+ +++l    +++vG  G GKt la+ i++++ ++++
  EGE27367.1 34 IDKLV-QGSLR--ELFIVGDSGFGKTHLASAIYEHYTSMTS 71
                78888.66666..69*******************9888766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0011       1.2       8      29 ..      45      66 ..      43      86 .. 0.85
   2 ?    4.7   0.2     0.031        33      91     125 ..      92     133 ..      76     145 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                l+++G sG GKT+l+  + e +
  EGE27367.1 45 LFIVGDSGFGKTHLASAIYEHY 66
                689************9888776 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.031
      AAA_22  91 v.....ielliiDEaqhlr.s...eealeeLrsllnlsrkgvql 125
                         l+i+D+ q +r s   +e l +L ++l   +++ q+
  EGE27367.1  92 LvglemFDLIIVDDLQMVRhSyewQEGLFHLINRLR--EHQKQI 133
                 444444689*********874667555555555555..555444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       4.5   4.8e+03      86      95 ..      30      39 ..      30      41 .. 0.88
   2 ?   14.0   0.0   3.5e-05     0.037       3      84 ..      45     134 ..      43     161 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.5
                EEE-STT-SS CS
       NACHT 86 ilDglDelvt 95
                ilD++D+lv+
  EGE27367.1 30 ILDAIDKLVQ 39
                89*****987 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.5e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-.........-HCHHHCCCCTS--SSS-C.......CHHHHCCSCCCEE CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna......rsladllfsqlpepaapvse.......vwavllelperlL 84 
                 +++ G++G GKT+L+  + +   + +      k+v+ l+l el ++ +       + + dl+  + ++  +++ e        ++ l e+++++L
  EGE27367.1  45 LFIVGDSGFGKTHLASAIYEHYTSMTS-----KMVISLNLTELIEQDPHatalvgLEMFDLIIVDDLQMVRHSYEwqeglfhLINRLREHQKQIL 134
                 79****************998888883.....456666666655544434445666667777666666666666655555555555555555555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   2.8e-05     0.029      14      42 ..      45      73 ..      39     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.8e-05
                EEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGei 42
                + ivG++G GK+ L+++++++++    ++
  EGE27367.1 45 LFIVGDSGFGKTHLASAIYEHYTSMTSKM 73
                68*******************99866666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     4e-05     0.042       2      48 ..      46     118 ..      45     139 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4e-05
                 EEESSTTSSHHHHHHHHHHHH....THEEEEEETTTCSSS......................STTHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel....gvefleisgsellsk......................yvgesekkire 48 
                  ++G  G GKT la+a+ ++     +  +++++++el+++                      +v +s +  ++
  EGE27367.1  46 FIVGDSGFGKTHLASAIYEHYtsmtSKMVISLNLTELIEQdphatalvglemfdliivddlqMVRHSYEWQEG 118
                 579*****************633334668********966677777666666666666666644444444444 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.2e-05     0.034       2      76 ..      45     113 ..      44     136 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.2e-05
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhply 76 
                 + +vGdsg GKt l++ + e+  s ++k  i++++++  + +  +  + +++  v l+++D+   ++ + ++++y
  EGE27367.1  45 LFIVGDSGFGKTHLASAIYEHYTSMTSKMVISLNLTEL-I-E--Q--DPHATALVGLEMFDLIIVDDLQMVRHSY 113
                 679****************9999999999999988543.2.2..2..2223345667777766666666666666 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0002      0.21       7      53 ..      28      74 ..      18      83 .. 0.70
   2 ?    0.0   0.0      0.36   3.8e+02      91     120 ..      86     114 ..      70     133 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
                HHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC.TCCCE CS
        PIF1  7 kkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs.egkiv 53
                + ++dai + +++ + + +F+ G +G gKt l  a+++   s + k+v
  EGE27367.1 28 RPILDAI-DKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSmTSKMV 74
                3344444.5555677788******************998887444444 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.36
                 HTSCCCHHHHHC-SEEEEECGGGSBHHHHH CS
        PIF1  91 krgsklaellkktsliiwDEapmverecfe 120
                  ++ +    l+  +lii+D+  mv  + +e
  EGE27367.1  86 DPHATALVGLEMFDLIIVDDLQMVR-HSYE 114
                 4455555667889999999999985.4444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00016      0.17       6      90 ..      46     130 ..      43     146 .. 0.68
   2 ?   -2.3   0.0         4   4.2e+03      46      73 ..     185     213 ..     165     218 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
      AAA_14   6 vitGaRrvGKTtllkqlikell.vkkesilyinldderdkkladpekllelileklkeekktylflDEiqev.......pewekalkslvdeg 90 
                 +i+G    GKT l+  +++++  ++++ ++ +nl +  +   +dp+   +++  +       +++ D  q+v       +++++ +++l +++
  EGE27367.1  46 FIVGDSGFGKTHLASAIYEHYTsMTSKMVISLNLTELIE---QDPH--ATALVGLE---MFDLIIVDDLQMVrhsyewqEGLFHLINRLREHQ 130
                 68888899*****99999888777777777777776444...4452..34444442...2258*********666555555555555555544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4
      AAA_14  46 ladpekllelilek.lkeekktylflDEi 73 
                  + pe++ +++le+  ++ ++   +lD i
  EGE27367.1 185 WKLPEEIFDYLLEEgPRNAGDINTILDHI 213
                 33455667777776433345555666655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0077       8.1      14      53 ..      37      75 ..      30      90 .. 0.73
   2 ?    2.5   0.1      0.11   1.2e+02     122     158 ..     101     132 ..      96     138 .. 0.73
   3 ?    0.1   0.0      0.58   6.1e+02     187     217 ..     174     207 ..     168     213 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0077
    ATPase_2 14 ilerepneiyfiYGpegsGKtaLlkeiienledkdkyviy 53
                +++ +  + +fi G  g GKt L   i+e   +   + + 
  EGE27367.1 37 LVQGSL-RELFIVGDSGFGKTHLASAIYEHYTSMTSKMVI 75
                555433.3479****************9998766655554 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.11
    ATPase_2 122 iiiDelqklidlglngaellvkeLlnliesltkekhl 158
                 ii+D+lq+++     ++ +  + L+ li +l ++++ 
  EGE27367.1 101 IIVDDLQMVR-----HSYEWQEGLFHLINRLREHQKQ 132
                 99******99.....3445666777777777776665 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.58
    ATPase_2 187 ilvddldketalnflkegfkeleel...skedfe 217
                 il++++ k++ +++++e f  l e+   +  d++
  EGE27367.1 174 ILIEVILKKKNWKLPEEIFDYLLEEgprNAGDIN 207
                 7888888999*******99988444354445555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0063       6.7      12      39 ..      44      71 ..      33      82 .. 0.84
   2 ?    4.1   0.2     0.051        54     104     135 ..      98     136 ..      77     141 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0063
      AAA_19 12 vllvtaGpGtGKTrvlkhivallvelgg 39
                 l++++  G GKT++  +i +++ ++++
  EGE27367.1 44 ELFIVGDSGFGKTHLASAIYEHYTSMTS 71
                57899*****************998875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.051
      AAA_19 104 e.llivDEfqdvd.e.....lqyrLlkallgekkklllv 135
                 + l+ivD  q+v          ++L+++l +++k++l +
  EGE27367.1  98 FdLIIVDDLQMVRhSyewqeGLFHLINRLREHQKQILYL 136
                 449********9643111113456777777666666655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.13      20      64 ..      46      92 ..      42     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
  Zeta_toxin 20 llgGqpGAGKselaellkdele..rqgnvvrldpDdlRelhPeyeei 64
                +++G +G GK++la+++ +  +  + + v+ l+ ++l e+ P++ ++
  EGE27367.1 46 FIVGDSGFGKTHLASAIYEHYTsmTSKMVISLNLTELIEQDPHATAL 92
                899**************99998878889999*********9999876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00028      0.29       2      83 ..      46     133 ..      45     143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00028
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl.....klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdee.nps.dlaelirlvsstpyp 83 
                   +++G+sg GK++la  + ++ ++          +  +++ + p  + + g +  + +++dD+  v+ ++  ++  ++ ++rl + ++ +
    EGE27367.1  46 FIVGDSGFGKTHLASAIYEHYTSMTskmviS-LNLTELIEQDPHATALVGLEMFDLIIVDDLQMVRHSYeWQEgLFHLINRLREHQKQI 133
                   799*************988887444555543.334666678888999999999999999999999988876665777777776666655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00063      0.66       8      52 ..      32      77 ..      31     140 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00063
      AAA_30  8 aavealltsgdrvavltGpAGtGKttalkalreaweaa.ggrvigl 52
                +a+++l++++ r  +++G  G GKt++ +a+ e++++   + vi l
  EGE27367.1 32 DAIDKLVQGSLRELFIVGDSGFGKTHLASAIYEHYTSMtSKMVISL 77
                68899999999999********************999855666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 1838.31
//
Query:       EGE27368.1  [L=369]
Description: hypothetical protein EA1_02853 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-55  186.0  40.9    1.2e-54  185.7  40.9    1.0  1  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.7  40.9   6.5e-59   1.2e-54       3     324 ..      14     344 ..      12     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: 185.7 bits;  conditional E-value: 6.5e-59
  AI-2E_transport   3 lilvllllllalypfiselllplliAlvlayllnpvvkfLkkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayidslqni 96 
                      +il+ l l l++++++++++ p+++A++lay lnp+v +L    ++r+lav++v+++ +v++  l++ lvp+++aq++ l +slp++i+++++ 
       EGE27368.1  14 FILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRL-ALIMPRILAVSVVYISCFVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDT 106
                      566666677777777779**********************.999************************************************** PP

  AI-2E_transport  97 lnelpslleele.n...liqalkqslskilsnilssi........lnsllsllasllglilslvlvllllffllldgeklrqgilkllpervre 178
                         +  ++   e       + +    ++ l  ++++         ++++ s   s+++ i  +v+v++l+f++ll +++ +      +p+++++
       EGE27368.1 107 GRAWIARYTNSElLpldI-DLIS---NTALDYFQNNYqvndvqglIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYTWKLSIPKPYTN 196
                      *********998556741.3333...3333333333332234444888888888888888899**************9877777777******* PP

  AI-2E_transport 179 rvkailrelektlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltgg...ikevlivlivvllv 269
                      +v +i+r+ + +l ++++gq+lv+l+ g + +i l ++g++++l+++i++g+a+++Py+G  i++i  a+ia l++    + ++ +++  +++ 
       EGE27368.1 197 KVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGITAGIASFVPYLGFGIGIIA-ALIAGLFQFgldWIYLGLIFGAFMIG 289
                      ****************************************************************999.78888888856555555666777888 PP

  AI-2E_transport 270 qliegnilePklmgkrlglhplvillsllaggklfGlvGlilavpltavikaile 324
                      q++eg+il+P l+g ++gl+pl++++s+lag++lfG+vG+++a p+ avi+++++
       EGE27368.1 290 QVVEGYILQPLLLGDKIGLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLFH 344
                      99************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2747.19
//
Query:       EGE27369.1  [L=348]
Description: phosphoribosylaminoimidazole synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-39  133.5   0.1    1.1e-38  132.9   0.1    1.3  1  AIRS_C    AIR synthase related protein, C-terminal domain
    1.8e-15   57.3   1.0    3.1e-15   56.6   0.5    1.7  2  AIRS      AIR synthase related protein, N-terminal domain


Domain annotation for each model (and alignments):
>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.1   1.2e-42   1.1e-38       1     154 [.     176     346 ..     176     348 .] 0.96

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 1.2e-42
                 STTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTT......TSEHHHHHHHHHHHHHHHHHHHH....HTTECEEEE--TTHHHHHHHHHHHTTTEEEEE CS
      AIRS_C   1 kpGdvliltgslGlggagtslkrkileeegldds......avqlgdvlleptliyvkralaal....kglvkaahDvTgGGLlgalaemapasgvgaei 89 
                 + Gdvl+ ++s+G++++g+sl+rk++e   +d        + +l+d+l+ pt+iyvk   a++    + +++a++++TgGGL+++l++++p++ + a+i
  EGE27369.1 176 QKGDVLLALASSGVHSNGYSLVRKVIEVTNTDVHtqtlesGTKLADALMAPTRIYVKSVNALQkslgNANIHAMAHITGGGLTENLPRVLPKN-LAAQI 273
                 57***************************99888*****8888***************9999999*99************************8.***** PP

                 ECG...THHHHHHHH.....HHHHHHHCSTTTEEEEEEEHGGH.HHHHHHHHHTTCCCEEEEEEEEESSSEEEE CS
      AIRS_C  90 dld...kvpifdele.....splemllsensGrllvavppeea.davlaileeeglpeaavIGevtakeelsvi 154
                 d +    +++f++l+     + lem++++n+G+++++v+p+++ ++++++l++eg+ ++++IG+++++ + +v+
  EGE27369.1 274 DTSswaLPEVFQWLQhggniDTLEMYRTFNCGVGFILVVPADQaKQAMNKLTAEGE-QVWQIGQIIERTDDAVV 346
                 ******************************************99************.7*********9987765 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.5   3.5e-19   3.1e-15       9      94 .]      64     164 ..      17     164 .. 0.85
   2 ?   -3.0   0.0       1.3   1.2e+04      51      76 ..     224     255 ..     196     265 .. 0.60

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 3.5e-19
                 EEEEE.EECCTCCCC................HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.....HHHHHHHHHHHHHHHTT-EEEEEEEEEESS... CS
        AIRS   9 tdshnrpvlvepvhf................iGakavavnlsDlaamGArPlalllslalp.....wleevvrglaeaaeelgvplvgGdtsfsne... 83 
                 td            +                iG+ +va++++Dl+++GA+Pl++l+++a +     +++ v++g++e+++ ++++l+gG+t+++++   
  EGE27369.1  64 TD------------GvgtklklalqlnrhetIGQDLVAMCVNDLLVCGAEPLFFLDYYATGkldvdTAATVIAGIGEGCQLANCALIGGETAEMPGmyq 150
                 33............33333333333344445*************************************************************9988888 PP

                 ...EEEEEEEEEEE CS
        AIRS  84 ...ptisvtavGlv 94 
                    + ++ ++vG+v
  EGE27369.1 151 dedYDLAGFCVGVV 164
                 89999999999987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
                 EEC......HHHHHHHHHHHHHHHTT-EEEEE CS
        AIRS  51 alp......wleevvrglaeaaeelgvplvgG 76 
                 + p       ++++ ++l++a  ++ ++++gG
  EGE27369.1 224 MAPtriyvkSVNALQKSLGNANIHAMAHITGG 255
                 44444444444444455555555555556665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2841.11
//
Query:       EGE27370.1  [L=222]
Description: phosphoribosylglycinamide formyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-50  170.9   0.1    2.5e-50  170.7   0.1    1.0  1  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.7   0.1   1.4e-54   2.5e-50       2     179 ..       7     187 ..       6     189 .. 0.96

  Alignments for each domain:
  == domain 1  score: 170.7 bits;  conditional E-value: 1.4e-54
                     EEEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCC...SCCCCCCCHHHHHHHHCTT-SEEEEES--S--- CS
  Formyl_trans_N   2 kivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekk...leprsqfeeelaeelkelkadlivlagymkllp 93 
                     k++vl+sg+gsnlq ++da+k+gsl  d+v v+sn+++a+ +++a++a+i + v+++ +     + + fe+ + ++++  ++dl+vlag+m++l+
      EGE27370.1   7 KVAVLVSGSGSNLQVMIDAMKSGSLAIDIVGVISNREDAYAITRAKDAGIQVSVLSHVPngkRMSINTFEKYALQQIQDWSPDLVVLAGFMRVLS 101
                     9********************************************************996655555899************************** PP

                     HHHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  94 kelvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalve 179
                      ++++ ++  ++n+HpSLLP +kG++++qr+l++Gdk++G++ih+v+ +lD G++l q+ + ++  dt ++l++rv+++eh++++ 
      EGE27370.1 102 AQFINNMPCAMINLHPSLLPHYKGLDTHQRVLQSGDKYHGCSIHVVTPKLDAGQVLTQAWLAVDVLDTPKSLAKRVQTLEHRLVPY 187
                     *********************************************************************************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1901.73
//
Query:       EGE27371.1  [L=74]
Description: hypothetical protein EA1_02868 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 543.10
//
Query:       EGE27372.1  [L=251]
Description: glutamine cyclotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-67  225.0   0.2    1.3e-66  224.7   0.2    1.0  1  Glu_cyclase_2  Glutamine cyclotransferase
    0.00091   18.9   0.2     0.0013   18.4   0.2    1.1  1  DUF4221        Domain of unknown function (DUF4221)
  ------ inclusion threshold ------
       0.14   11.9   0.4       0.14   11.9   0.4    2.2  3  DUF2963        Protein of unknown function (DUF2963)
       0.16   12.6   0.2       0.76   10.4   0.0    2.2  3  PepSY          Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> Glu_cyclase_2  Glutamine cyclotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.7   0.2   2.8e-70   1.3e-66      28     249 ..      24     247 ..      18     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: 224.7 bits;  conditional E-value: 2.8e-70
  Glu_cyclase_2  28 kvevvaeyphdpeaftqGLefe.dgelyestGlegksslrkvdletgkvlkeaeldeelFgEGitvlgdklyqltwkegvafvydaetleeigrvs 122
                    +++++++yp  +  f qGL+++  ++l+ s+Gl+g+s++  ++l+tgk+   ++l +++F+EG+tv++d ++q+tw+e++af +da+tl+ +++ +
     EGE27372.1  24 SFKLIQSYPVHHPIFIQGLQLDgSNRLVYSAGLYGRSEIGYLNLATGKTYGVKKLAPSVFAEGLTVTDDGIWQITWREQMAFLRDAKTLTIKKTAH 119
                    57899*****************7788********************************************************************** PP

  Glu_cyclase_2 123 yegeGWGlttdg..krlvmsdGsstltfldpktfaetksvevtkdgkevsklNELeyvkgeiyaNvwqtdrilridpatGkvtgvidlsalreeae 216
                    y geGWGl++d+  k l  sdGss+l+ ld+k+f++ ++++v+++gk+v+++NELey++g +yaN+wq+++i++idp+tGkv +++d+s l ++++
     EGE27372.1 120 YLGEGWGLAYDKrqKVLWLSDGSSKLQKLDAKNFNKISEISVQNNGKPVEYINELEYANGFLYANIWQSNKIIKIDPNTGKVLNTYDFSPLVSTLN 215
                    *********875226799****************************************************************************** PP

  Glu_cyclase_2 217 kaakedVlNGiAydpetdrlfvTGKlWpklfev 249
                     ++ + VlNGiA++ + +++++TGK+   +++v
     EGE27372.1 216 LTDPDSVLNGIAHIGG-QSFYITGKNFGVVWQV 247
                    ************9765.69******99888877 PP

>> DUF4221  Domain of unknown function (DUF4221)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   2.8e-07    0.0013      30     163 ..     108     237 ..      99     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.8e-07
                 EEEEEE--TTS-S--SSEEEE.EETTEEEEEEEE-ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EE..ESSSTTSEEEE.GGGTEEEEE-T.T CS
     DUF4221  30 dtltfslddlvvnlskglqsfdssdgkeyLaflnkqesaeieiyDleelklvkripfekeGPngigkpvgfk..qvldsiflllg.nafnelflfne.s 124
                 d +t+ ++    +l++g   + ++ + + L   ++   +++++ D ++ + ++ i+ +       gkpv ++   +  + fl+    ++n+++++++ +
  EGE27372.1 108 DAKTLTIKKTAHYLGEGWGLAYDKRQ-KVLWLSDGS--SKLQKLDAKNFNKISEISVQNN-----GKPVEYIneLEYANGFLYANiWQSNKIIKIDPnT 198
                 34555555555566666666644544.555255555..49*******************5.....566655533777899****************636 PP

                 --EEEEEE---TTS-------BTTTTB--EEETTEEEEE CS
     DUF4221 125 gekvkkinlesnelegeenefgsfvnspiaikdgklysg 163
                 g+  +++++++    ++ ++ +s++n ++ i ++++y++
  EGE27372.1 199 GKVLNTYDFSPLVSTLNLTDPDSVLNGIAHIGGQSFYIT 237
                 888899******************************996 PP

>> DUF2963  Protein of unknown function (DUF2963)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   5.6e+03       7      14 ..     113     120 ..     111     134 .. 0.70
   2 ?   11.9   0.4   3.1e-05      0.14      12      40 ..     146     174 ..     139     185 .. 0.88
   3 ?   -1.9   0.1      0.62   2.8e+03      10      20 ..     190     200 ..     187     206 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
     DUF2963   7 tIkkideY 14 
                 tIkk++ Y
  EGE27372.1 113 TIKKTAHY 120
                 67777644 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.1e-05
     DUF2963  12 deYnpqtgkkiKrtnYqedGktinsIeey 40 
                 ++ + ++ +ki+ +  q++Gk +++I+e 
  EGE27372.1 146 QKLDAKNFNKISEISVQNNGKPVEYINEL 174
                 688999*********************96 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.62
     DUF2963  10 kideYnpqtgk 20 
                 ki + +p tgk
  EGE27372.1 190 KIIKIDPNTGK 200
                 44455666665 PP

>> PepSY  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.5   6.8e+03      27      39 ..      46      57 ..      42      71 .. 0.67
   2 ?   -3.5   0.0       3.7   1.7e+04      15      24 ..     163     172 ..     156     179 .. 0.60
   3 ?   10.4   0.0   0.00017      0.76      50      63 .]     192     205 ..     184     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.5
                EETTEEEEEEEEE CS
       PepSY 27 eddgrlvYevels 39
                +  +rlvY   l+
  EGE27372.1 46 G-SNRLVYSAGLY 57
                4.78999988777 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.7
                 STTEEEEEEE CS
       PepSY  15 vpgkiieiel 24 
                 ++gk +e++ 
  EGE27372.1 163 NNGKPVEYIN 172
                 4455555544 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00017
                 EEEETTT--EEEEE CS
       PepSY  50 vfiDAkTGkvlkke 63 
                 ++iD++TGkvl+++
  EGE27372.1 192 IKIDPNTGKVLNTY 205
                 68*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1981.88
//
Query:       EGE27373.1  [L=51]
Description: 50S ribosomal protein L33 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-18   64.9   0.2    7.4e-18   64.7   0.2    1.0  1  Ribosomal_L33  Ribosomal protein L33


Domain annotation for each model (and alignments):
>> Ribosomal_L33  Ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.2   4.1e-22   7.4e-18       2      47 .]       4      49 ..       3      49 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 4.1e-22
                   EEEEEET...........EEEEETT..--S--EEEEEETTTTEEEEEEEE- CS
  Ribosomal_L33  2 kvtLeCtecksrn.....YtttknkkntperLelkKYcprcrkhtlhkEtK 47
                   k++L++t     +     Ytttknk++ p ++e+kK++p++r+h+l+kE+K
     EGE27373.1  4 KIKLVST-----AgtgyfYTTTKNKRTMPGKMEIKKFDPKIRQHVLFKEAK 49
                   8******.....444557*******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 430.09
//
Query:       EGE27374.1  [L=78]
Description: 50S ribosomal protein L28 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-28   96.8   1.7    7.2e-28   96.6   1.7    1.1  1  Ribosomal_L28  Ribosomal L28 family


Domain annotation for each model (and alignments):
>> Ribosomal_L28  Ribosomal L28 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   1.7     4e-32   7.2e-28       1      59 [.       3      61 ..       3      62 .. 0.99

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 4e-32
                   ---TTT------------S-..-SSS-BTTEEEEEEEE.TTTEEEEEEEEHHHHHH--. CS
  Ribosomal_L28  1 rvCeltGkkpqfGnnvshsknkTkRtwkPNlqkvrlwseelgrkvrikvstkcLRtidk 59
                   rvC++tGk+p +Gnnvsh++nkT+R+++PNl+++r+w+e+++r+vr++vs k++R idk
     EGE27374.1  3 RVCQVTGKRPLVGNNVSHAHNKTRRRFLPNLHNHRFWVESENRFVRLRVSSKGMRIIDK 61
                   8*********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 694.18
//
Query:       EGE27375.1  [L=115]
Description: HopJ type III effector protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-38  130.3   0.1    3.5e-38  130.2   0.1    1.0  1  HopJ      HopJ type III effector protein


Domain annotation for each model (and alignments):
>> HopJ  HopJ type III effector protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   0.1   1.9e-42   3.5e-38       9     109 .]      14     111 ..       6     111 .. 0.93

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 1.9e-42
                 HH-CCG--HHHHHHHHHHHEEE----EEETTEEE-TTSSHHHHHHHHHHHHTT--HHHHHHHTTHHHHTTTTT-TT----HHHHHHHHHGGGGEEESS- CS
        HopJ   9 kkepesvefedvlavideaYeftptaFkNgeleneagenegsckifafakleelskeetLalfgeyYredVlenpegedHqNiRnfmktgwegvefeke 107
                 ++  ++++f+dvla+id++Y+++p++F+Nge+ n+ g+negs+k+f++ak ++l+k +tL+lf+e+Yr +V ++p+g dH+NiRnfm++gw+g+ +  +
  EGE27375.1  14 ES--NQLTFHDVLAFIDAHYNYQPIEFSNGEVANALGTNEGSAKVFSLAKQHGLNKVDTLKLFAEHYR-AVQNTPQGIDHANIRNFMRYGWAGIGMPIN 109
                 44..59**************************************************************.*************************98776 PP

                 -E CS
        HopJ 108 aL 109
                 aL
  EGE27375.1 110 AL 111
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 865.39
//
Query:       EGE27376.1  [L=83]
Description: carbon storage regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-26   90.9   0.8    4.1e-26   90.7   0.8    1.1  1  CsrA      Global regulator protein family
  ------ inclusion threshold ------
      0.032   14.6   0.4       0.37   11.2   0.3    2.0  2  S1        S1 RNA binding domain


Domain annotation for each model (and alignments):
>> CsrA  Global regulator protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.8   4.6e-30   4.1e-26       1      52 [.       1      52 [.       1      53 [. 0.99

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 4.6e-30
                -EEEEEETT-EEEETTTEEEEEEEEETTEEEEEEE--TTS-EEEHHHHHHHT CS
        CsrA  1 MLvLtRkkgEsIvIgddIeitvlevegnqvrlgIeAPkevkIlReEiyeeiq 52
                ML+LtR++gE+++Igd++ +tvl+v+gnqvrlg++APk++ ++ReEiy++iq
  EGE27376.1  1 MLILTRRVGETLMIGDEVSVTVLGVKGNQVRLGVNAPKDIAVHREEIYQRIQ 52
                **************************************************98 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1   0.00042       3.8      46      64 ..       8      26 ..       4      29 .. 0.86
   2 ?   11.2   0.3   4.2e-05      0.37       3      40 ..      13      50 ..      11      65 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00042
                HHHCEETTEEEEEEEEEEE CS
          S1 46 pdevlkvGdevkvkvlkvd 64
                 +e+l +Gdev v vl+v+
  EGE27376.1  8 VGETLMIGDEVSVTVLGVK 26
                679999**********996 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.2e-05
                TTTCEEEEEEEEEETTEEEEEET..TTEEEEEEGGGSSSS CS
          S1  3 ekgevveGeVtsvtkgGafVelg..ngvegfvpaselsrd 40
                ++g++v+ +V  v   G  V+lg  ++ ++ v+++e+ ++
  EGE27376.1 13 MIGDEVSVTVLGVK--GNQVRLGvnAPKDIAVHREEIYQR 50
                78999999999999..5555555559**********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 666.76
//
Query:       EGE27377.1  [L=427]
Description: aspartate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-50  171.5   1.2    4.1e-50  170.6   1.2    1.4  1  AA_kinase  Amino acid kinase family
    2.3e-19   68.9   1.3    2.8e-14   52.6   0.6    3.1  2  ACT_7      ACT domain
    1.6e-16   59.7   0.3    2.4e-08   33.6   0.1    3.0  3  ACT        ACT domain
     0.0099   15.4   1.6      0.053   13.0   0.0    2.7  4  DUF3335    Peptidase_C39 like family
  ------ inclusion threshold ------
       0.09   12.9   0.2       0.38   10.9   0.0    2.1  2  eIF-5a     Eukaryotic elongation factor 5A hypusine, DNA-bind


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   1.2   1.2e-53   4.1e-50       2     240 ..       3     229 ..       2     230 .. 0.97

  Alignments for each domain:
  == domain 1  score: 170.6 bits;  conditional E-value: 1.2e-53
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--.HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHG CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGg.gsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglp 99 
                 ++V K GG+s+++  +  ++++a+ ++++  +g+++vvV+++ ++ t++l+ l++++ss++                + d+++  ge+++ +lla +l+
  EGE27377.1   3 LIVQKYGGTSMGNITR--IKNVAQRVKRWYDNGHQVVVVVSAmSGETNRLIGLAREISSDPDP-------------REYDQMVCTGEQVSISLLAMALQ 86 
                 69**************..************************99*********9999999999.............577******************** PP

                 EEEE-GGGTCEECCCE.....HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTE...EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTT CS
   AA_kinase 100 avglsaaaldateagr...degsdgnvesvdaeaieelleagvvpvltgfigldeege...lgrgssDtiaallAealgAdkliiltdVdGVydadpkk 192
                 + g++a++++  +  +   d+++++++ s+d++ i   l+ag v+v++gf+g+de+g+   lgrg+sDt+ ++lA+al+Ad++ i+tdVdGVy+ dp++
  EGE27377.1  87 SLGVDAKSMTGDQVAIhtdDTHTKARIQSIDTDSILSELNAGRVIVVAGFQGIDEHGDvttLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTDPRV 185
                 *********9888888*********************************************************************************** PP

                 CCTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 193 vpdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvIt 240
                  p+a++l++i+++e++e    +a+ G kv+  + +++a + ++p++++
  EGE27377.1 186 TPKAKKLSKITFEEMLE----MASLGSKVLQIRSVEFAGKYQVPLRVL 229
                 *****************....*******************99**9997 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.3e-05     0.046      12      64 ..     280     335 ..     271     336 .. 0.72
   2 !   52.6   0.6   7.9e-18   2.8e-14       4      64 ..     351     411 ..     348     412 .. 0.97

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
                 -S-.---SS--HHHHHHHHHHTTT---EEEE...-SS..-E.EEEEEGGGHHHHHHHHH CS
       ACT_7  12 vgsglpfdvtGivaklaspLaeagIsifqiS...tyr..td.yiLVpeedlekAveaLh 64 
                  g     d++Gi++++ sp  +a+I++ +i    +++  td ++ Vp  d  kA+++L+
  EGE27377.1 280 LGV---PDHPGIASAILSPIGRANIEVDMIIqnmSENgvTDfSFTVPRGDFNKAMKILN 335
                 444...38*******************99987754432233145688888888888887 PP

  == domain 2  score: 52.6 bits;  conditional E-value: 7.9e-18
                 EEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE.-SS-EEEEEEGGGHHHHHHHHH CS
       ACT_7   4 dgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS.tyrtdyiLVpeedlekAveaLh 64 
                 ++++k+s+vg g+++ + G+++k+++ La ++I++ +iS ++++ ++L++ee lekAv+ Lh
  EGE27377.1 351 SDVVKVSIVGVGMRS-HAGVASKMFETLASQNINLQMIStSEIKVSVLIKEECLEKAVKSLH 411
                 6789***********.*********************************************9 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.2     8e+03      34      65 ..      60      88 ..      56      89 .. 0.66
   2 !   33.6   0.1   6.6e-12   2.4e-08       2      63 ..     277     335 ..     276     338 .. 0.86
   3 !   22.8   0.0   1.5e-08   5.5e-05       2      38 ..     358     394 ..     357     412 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.2
                EEESTTECEEEEEEEEEEHHHHHHHHHHHHTT CS
         ACT 34 rssedkvagivfvvivvdeedleevlealkkl 65
                 ++     ++  +v+++++ +++ +  al++l
  EGE27377.1 60 DPDP---REYDQMVCTGEQVSISLLAMALQSL 88
                3333...4777788888888888888888776 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 6.6e-12
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHH CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealk 63 
                 ++ +gvpD+PG+++++++ +++++i +d+i q  se    g +++ ++v   d  ++++ l+
  EGE27377.1 277 IVVLGVPDHPGIASAILSPIGRANIEVDMIIQNMSEN---GVTDFSFTVPRGDFNKAMKILN 335
                 5677********************************9...7888888888888777777776 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 1.5e-08
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEEST CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssed 38 
                 ++ vg++ + G++++ f +la  +iN+ +i++++ + 
  EGE27377.1 358 IVGVGMRSHAGVASKMFETLASQNINLQMISTSEIKV 394
                 6889*****************************9976 PP

>> DUF3335  Peptidase_C39 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.15   5.4e+02     119     139 ..      23      43 ..      14      49 .. 0.83
   2 ?   -3.3   0.0       1.4     5e+03     105     133 ..     104     132 ..      92     133 .. 0.67
   3 !   13.0   0.0   1.5e-05     0.053      48     104 ..     147     203 ..     142     219 .. 0.86
   4 ?   -2.9   0.1       1.1   3.8e+03     104     141 ..     355     392 ..     330     395 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.15
     DUF3335 119 leeleealakgalvlvListy 139
                 +++++++ ++g++v+v++s +
  EGE27377.1  23 AQRVKRWYDNGHQVVVVVSAM 43 
                 67899*************976 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
     DUF3335 105 aeeagvevekeelsleeleealakgalvl 133
                 +++++ + + ++++++++ ++l++g++++
  EGE27377.1 104 TDDTHTKARIQSIDTDSILSELNAGRVIV 132
                 45556666777778888888888887776 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.5e-05
     DUF3335  48 tsGhggceplGLalaaarrgfevevlvskeeplfldsvrseekkevlelvqedflee 104
                 t G gg++ +G alaaa +  e +++++ +++   d   +++ k++ ++  e++le 
  EGE27377.1 147 TLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTDPRVTPKAKKLSKITFEEMLEM 203
                 67********************************99999999999888877777665 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.1
     DUF3335 104 eaeeagvevekeelsleeleealakgalvlvListyrl 141
                 +++  gv ++ ++  ++++ e+la+ ++ l +ist ++
  EGE27377.1 355 KVSIVGVGMRSHAGVASKMFETLASQNINLQMISTSEI 392
                 55555666666666777778888888888888888765 PP

>> eIF-5a  Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0001      0.38      37      62 ..      21      45 ..      14      49 .. 0.81
   2 ?   -2.9   0.0       2.1   7.7e+03      17      28 ..     306     317 ..     300     344 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
                GB-HHHHTT--TT-E..EEEEEETTE CS
      eIF-5a 37 elgkqikekfeegkdvlVtVlsamGe 62
                ++++++k+++++g + +V+V+sam  
  EGE27377.1 21 NVAQRVKRWYDNGHQ-VVVVVSAMSG 45
                799************.5666777754 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
                 EEEEEETT--EE CS
      eIF-5a  17 flsLmdddgetk 28 
                  ++ m+++g t 
  EGE27377.1 306 IIQNMSENGVTD 317
                 455555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3298.56
//
Query:       EGE27378.1  [L=94]
Description: IS4 family transposase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00081   19.1   1.2     0.0011   18.7   1.2    1.1  1  DDE_Tnp_1  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.2     6e-08    0.0011     168     214 .]       9      55 ..       6      55 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6e-08
   DDE_Tnp_1 168 aelyrlRwqiErvFkwlkrkfgldrlryrglnrveaqllllllalnl 214
                  +l + R  iE+v+ +l  +f+  +lr+r+l +   +++ ++la+n+
  EGE27378.1   9 NRLKNARGDIETVIDRLFGRFNMQKLRARDLWHLSHRFMRKILAYNF 55 
                 678899****************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 777.48
//
Query:       EGE27379.1  [L=521]
Description: amino acid/peptide transporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-63  212.4  23.4    2.6e-62  210.9  23.4    1.7  1  PTR2            POT family
    7.4e-22   77.7  61.1    9.4e-15   54.4  37.3    2.2  2  MFS_1           Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.18   10.2   6.9       0.34    9.3   6.9    1.5  1  SID-1_RNA_chan  dsRNA-gated channel SID-1


Domain annotation for each model (and alignments):
>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.9  23.4   4.4e-66   2.6e-62       3     384 ..     101     475 ..      99     486 .. 0.84

  Alignments for each domain:
  == domain 1  score: 210.9 bits;  conditional E-value: 4.4e-66
                 HHHHHHHHHHHHHHHCCCCT.TTTSS--S--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        PTR2   3 tIllgsiiyaiGhvvlalsa.ipslksaesagvrvallfigLalIalGtGgiKpnvSafgadqfeekdprersrfFsiFyfsiNvGSLlsliitpylqe 100
                 +  +gs+i+a+Gh+ +alsa + +           +++f+gL+ I++G G++K ++S +++ +++++d r++ + F++Fy++iN+G+L++ +i+++++e
  EGE27379.1 101 ALWWGSLIIALGHLCIALSAmVGA-----------SVFFLGLMFIVIGSGLFKTCISVMVGALYPDGDGRRDAG-FTLFYMGINIGALFASLIVGIFKE 187
                 66799**************94444...........49*************************************.************************ PP

                 TT-HHHHHHHHHHHHHHHHHHHHCTTTS-EE------SHHHHCCCHSHHHHHCCC...............HHHHHHHHHHHHHSHHHHHH--.-HHCCH CS
        PTR2 101 nvgyplgFgipavlmiiallvFllGsrlykkkppkgnvltkvfkvllvaaknkvk...............kirssagkkklhwldkakeldk.alsile 183
                 +  +++gFg+ +++m++all + +      kk  ++n +t v +     +  +v+               +     +  + + + +    +   l++ +
  EGE27379.1 188 QGMWHVGFGVGGFGMLVALLLYRFYAHASLKKYAQENNITPVWEYPSGQV-ANVGrwvfavvavltvvvgL----IMMGIMPFNPQVVAEYMtYLIAGT 281
                 **********************8877777777777888887776553332.23334666677787754433....334444444444444444577778 PP

                 CHHHHHHHHH-HHTHHCHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHH.HTST-BE.SSCB--GGGGHHHHHHHHHHHHHHHHHCTHHHHHHTTSSC CS
        PTR2 184 ivvegivfnimtkkkveevkrllrvvplflpliifwalyaQmgttlvlqa.rtmnrki.gsfeippaqlqvlnailillliPifdklvypllrkltlgl 280
                 iv+   ++ i     ++e  rll  + l +  ++fw  ++Q++t+++l+a r  + ++ g f+ip+ ++q+ln+++illl+Pi+  ++++l++k +l++
  EGE27379.1 282 IVLYFLYRFISPSLSKNEKVRLLICFLLIIGSTLFWSSFEQQPTSFNLFAdRYTDLNVmG-FNIPSLWFQSLNPFFILLLAPIVSVIWVKLANK-GLEP 378
                 8877777666655555555667778899999*******************9888888878.*********************************.56** PP

                 CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHT----------TCCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHHHHHH CS
        PTR2 281 tslkkiavGlflaslafaiaaivelkraktlpelpeaeevqisvlwlipqylligiselfasiggleffykeapksmkslitglflltnalgnflssvl 379
                 +s+ k+a+G++la+++f ++ + + ++ +          + +s +wl+ ++ll++++el +s++gl+ ++k+ap++m+++i+glf+++ a+gn+++++ 
  EGE27379.1 379 SSMAKFALGMLLAAAGFGLMIVAANHVVNQP-------GTLVSPMWLVGSLLLLTLGELALSPVGLSSMTKLAPERMQGQIMGLFFASIAVGNLVAAFF 470
                 ****************988877666554443.......469*****************************************************99877 PP

                 HHHHH CS
        PTR2 380 atlva 384
                    v+
  EGE27379.1 471 GGYVT 475
                 66555 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4  37.3   1.6e-18   9.4e-15      14     291 ..      45     316 ..      32     331 .. 0.71
   2 !   29.5  15.3   5.6e-11   3.3e-07      65     183 ..     384     513 ..     349     520 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.6e-18
       MFS_1  14 ilgpalplal.....aedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalg.lllll..fasslwlllvlrvlqGlgagalf 103
                  + p+l l++     +  +g++  +++ +++++a ++ ++++p+G+l+d+ +G  r l++g l+ alg l+++l  +  +  +++++ ++  +g+g++ 
  EGE27379.1  45 SIRPLLVLFMvatiqSGGFGFDDVTASAIYGIFAGAMYLMAVPGGWLADNwLGQERALWWGSLIIALGhLCIALsaM-VGASVFFLGLMFIVIGSGLFK 142
                 44444444442222266699******************************77****************666666544.444578888889999999*** PP

       MFS_1 104 pagaaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpaw 200
                 + + +++ +++p+   +r  ++ l+++g+++Ga+++ l+ g++ +++ W++ f + ++ +l+a++l  ++  ++ ++ + ++ ++            +w
  EGE27379.1 143 TCISVMVGALYPDgdGRRDAGFTLFYMGINIGALFASLIVGIFKEQGMWHVGFGVGGFGMLVALLLYRFYAHASLKKYAQENNITP-----------VW 230
                 *************656***********************************************77655555444444444444444...........44 PP

       MFS_1 201 kallkdpvl...willialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgl 291
                 ++   +      w++ ++++l+ ++  +++  +p+  q v  + ++l+ag    +l+++    ++++  ls+    ++ +ll+++ll++++ ++
  EGE27379.1 231 EYPSGQVANvgrWVFAVVAVLTVVVGLIMMGIMPFNPQVVAEYMTYLIAG--TIVLYFLY---RFISPSLSKN---EKVRLLICFLLIIGSTLF 316
                 44444442233474444444444455556666666445555555566666..66666666...9999999976...555555555555554443 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 5.6e-11
       MFS_1  65 lllglllfalg.lllllfass..........lw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg. 149
                 + lg+ll a+g +l+++  ++          ++ +l+ + +l  lg+ al p+g++ +++++p++ +g+ +gl+ a++++G ++++ +gg+++ + ++ 
  EGE27379.1 384 FALGMLLAAAGfGLMIVA-ANhvvnqpgtlvSPmWLVGSLLLLTLGELALSPVGLSSMTKLAPERMQGQIMGLFFASIAVGNLVAAFFGGYVTaDTINd 481
                 788999999995555553.33344456677766669999******************************************************877778 PP

       MFS_1 150 Wravfyilaivsllafvlfllllpeepperkrks 183
                  + +f  +ai++++++v+  ll++  p e+  k 
  EGE27379.1 482 LPNLFATMAIFLVVSAVM--LLILSHPIEKMLKD 513
                 ***************996..66666665555544 PP

>> SID-1_RNA_chan  dsRNA-gated channel SID-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.9   5.7e-05      0.34     459     533 ..     240     318 ..     106     328 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 5.7e-05
  SID-1_RNA_chan 459 ksrmvllvlgnl.vnvslavlglvlkp.kdfasylLaifivnlllYlvfYiim.Klrsserilllalll.ivltlvvwa 533
                       r+v+ v+++l v v+l+++g++  + + +a+y+  ++ + ++lY+++  i   l ++e+++ll ++l i+ ++++w 
      EGE27379.1 240 VGRWVFAVVAVLtVVVGLIMMGIMPFNpQVVAEYMTYLIAGTIVLYFLYRFISpSLSKNEKVRLLICFLlIIGSTLFWS 318
                     45889988776526778889998876658899*****************666515667899988766651556777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1159  (0.0646439); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 3430.87
//
Query:       EGE27380.1  [L=57]
Description: hypothetical protein EA1_02913 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.092   12.8   0.5       0.63   10.1   0.0    2.0  2  Fic_N     Fic/DOC family N-terminal


Domain annotation for each model (and alignments):
>> Fic_N  Fic/DOC family N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.023   4.2e+02      37      46 ..       7      16 ..       6      17 .. 0.84
   2 ?   10.1   0.0   3.5e-05      0.63       2      19 ..      19      36 ..      18      42 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.023
       Fic_N 37 vlSSeIEgtq 46
                +lSS IE ++
  EGE27380.1  7 QLSSDIETID 16
                68*****986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 3.5e-05
       Fic_N  2 kllseAnralgeLdgllr 19
                kl+ eA++al+eL+gl+ 
  EGE27380.1 19 KLTVEAHKALAELKGLAM 36
                7899***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 472.94
//
Query:       EGE27381.1  [L=37]
Description: hypothetical protein EA1_02918 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   13.7   0.1      0.045   13.7   0.1    1.1  1  Fanconi_A  Fanconi anaemia group A protein


Domain annotation for each model (and alignments):
>> Fanconi_A  Fanconi anaemia group A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.5e-06     0.045      32      52 ..      10      30 ..       5      37 .] 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-06
   Fanconi_A 32 levcaeiLecLekrkvsWlvL 52
                ++ c+ iL+cL + ++ Wlv+
  EGE27381.1 10 IKKCVHILQCLANMHTFWLVI 30
                678****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 269.79
//
Query:       EGE27382.1  [L=893]
Description: alanyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.4e-225  747.6   0.0   1.2e-224  746.9   0.0    1.3  1  tRNA-synt_2c     tRNA synthetases class II (A)
    6.4e-23   81.7   1.1    6.4e-23   81.7   1.1    2.3  2  DHHA1            DHHA1 domain
    5.3e-17   61.6   3.0      1e-16   60.7   0.3    2.9  2  tRNA_SAD         Threonyl and Alanyl tRNA synthetase second a
     0.0065   16.7   1.3     0.0065   16.7   1.3    2.2  3  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
  ------ inclusion threshold ------
      0.024   14.1   1.5      0.052   13.0   1.5    1.5  1  DUF3552          Domain of unknown function (DUF3552)
      0.026   14.6   1.9        1.8    8.7   0.4    2.8  2  DASH_Dad3        DASH complex subunit Dad3
       0.05   13.7   0.5       0.05   13.7   0.5    1.9  2  bZIP_1           bZIP transcription factor
       0.15   11.1   0.9       0.31   10.1   0.9    1.4  1  Atg14            Vacuolar sorting 38 and autophagy-related su
       0.15   11.3   2.1       0.41    9.9   2.1    1.7  1  DUF3450          Protein of unknown function (DUF3450)
       0.46   10.6   7.9       0.58   10.3   1.8    2.2  2  Tropomyosin_1    Tropomyosin like
       0.59   10.2   5.1       0.17   11.9   1.5    2.0  1  DUF1664          Protein of unknown function (DUF1664)
        1.9    9.0   7.2       0.24   11.9   1.3    2.3  2  Snapin_Pallidin  Snapin/Pallidin
        3.6    8.0   7.4       0.86   10.0   1.7    2.5  3  DUF4600          Domain of unknown function (DUF4600)
        6.6    7.2  11.1       0.76   10.2   0.8    3.0  3  DASH_Dad2        DASH complex subunit Dad2
        7.3    6.8   8.6       0.54   10.4   3.6    1.7  1  bZIP_2           Basic region leucine zipper
        7.9    7.0   7.4        4.1    7.9   1.3    2.9  3  DUF16            Protein of unknown function DUF16


Domain annotation for each model (and alignments):
>> tRNA-synt_2c  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  746.9   0.0  1.1e-227  1.2e-224       1     550 [.       8     560 ..       8     562 .. 0.98

  Alignments for each domain:
  == domain 1  score: 746.9 bits;  conditional E-value: 1.1e-227
                   HHHHHHHHHHHCTT-EEE----SS-SSSTTCSS--SGGGGGHHHHTTSSCGGSSSEEEEEEEEE-EETTEEGGGGTTTSSS--SEEEEEEEEESSSS CS
  tRNA-synt_2c   1 eirekFldfFekkgHtvvksssvvpendptllfvnAgmaqfkpiflgkeakpklkravnsQkciRagGkhnDlenVGktarHhTfFeMlGnfsfgdY 97 
                   e+r++F+dfF +k+Ht+v+sss++p+ndptllf+nAgm+qfk+ flg e k+++ rav+sQkc+RagGkhnDl+nVG+tarHhTfFeMlGnfsfgdY
    EGE27382.1   8 EVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLE-KRDYVRAVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDY 103
                   89***********************************************.*********************************************** PP

                   -HHHHHHHHHHHHH..TTTT--GGGEEEEEETTEHHHHHHHHHTTTTEGGGEEEE-HH.......HHEEESSSSEEEEEEEEEEEECETTSHHCHCC CS
  tRNA-synt_2c  98 fkeeaiefawellt..kelgldkerlyvtvfeeddeaveiweklvgvpeerilrfgek.......dnfwemgdtgpcgpcseiyydrgeeigkrkaa 185
                   fk++ai+fawe+lt  k+l l+k+rlyvtv+++ddea++iw+k +g+p+eri+ +g++       dnfw mgdtgpcgpc+ei+yd+ge+i++  ++
    EGE27382.1 104 FKKDAIAFAWEFLTdeKWLALPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNkggayqsDNFWMMGDTGPCGPCTEIFYDHGEHIWGGLPG 200
                   **************8888**************************************999**********************************9999 PP

                   CCTTCTCCHEEEEEEEEEEEEEESTTSHEEEEEEEEEEEEEEHHHHHHHHTTHSSGGGSCCTHHHHHHHHHHHT--TCSTCCHHHHHHHHHHHHHHH CS
  tRNA-synt_2c 186 seveadddrvleiwnlvfmqfnreedgtlkpLpkksidtGmglerlvavLqevrsnydtdlfvpvieaieeisgatyedkdetdealrviaDHvral 282
                   +++e d+dr++eiwn vfmqfnr++dgt++pLpk+s+dtGmgler+ a++q v+ ny+td+f++++ ++ +i g + +++ + + +l+v+aDH+r++
    EGE27382.1 201 TPDE-DGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSV 296
                   9999.**********************************************************************99999999************** PP

                   HHHHHTT--SSSSHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHTTTGCCHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC CS
  tRNA-synt_2c 283 afaladGvvpsnegrgYvlRrllRravrhakkLglkekflaklvavvvevlgdvypelkekeekveeiieeEeerFakTlerGlklleelikklkkk 379
                   af++adGv+psnegrgYvlRr++Rravrh++kLg+ ++f+++lv+ +++++gd+yp+l+++++k+e++i +Eee+FakTl++Glkll++++ +l+++
    EGE27382.1 297 AFLIADGVIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAILKEEEQFAKTLSQGLKLLSQELDSLQQG 393
                   ************************************************************************************************* PP

                   SEEXHHHHHHHHHCHXXXHHHHHHHHHCTTXEEXHHHHHHHHHHHHHHHCCHHSXSSXXXXXXXXTTSHCHHCCTSTTTXXXXXXTSXXXXXXSEEE CS
  tRNA-synt_2c 380 kelsgedafkLydtyGfPvdltkeiaeekglkvdiegfekameeqrerskkekkekklikkdvealkelkkteeflgyeeleaeakvlallkdkefv 476
                   ++l ge++fkLydtyGfP dlt++i++ekg+++d+ gfe +m+eqr+r++++ k     ++d++al ++++++eflgye+l+ +++v++l++d++ v
    EGE27382.1 394 DVLAGETVFKLYDTYGFPADLTADIVREKGITIDEAGFELSMAEQRTRAREAGKF----AMDYHALIQVDSATEFLGYERLDNDSTVIHLYQDGKAV 486
                   *************************************************887776....46************************************ PP

                   EEEEEEETTEEEESEEXXXXSSSSCSXXXEEEEESSEEEEESEEEEETTEEEEEXSS.XSXXXTTSEEEEEEXH CS
  tRNA-synt_2c 477 eeveegeevgvvLdrTpfYaesGGqigDeGliekegaefrvkdvqkakgvvlhkgkleegklkvgdkvkaevde 550
                   + ++eg+e++++Ld+TpfYaesGGq g  G i++e++ f v d+qk ++ ++h g ++ g+++ +++ +a+v +
    EGE27382.1 487 DTLAEGDEGVLILDKTPFYAESGGQVGELGEISTESGVFDVLDTQKSGQAIIHHGVVKMGHINNNQSATAQVAS 560
                   ******************************************************************99999865 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       3.7   4.2e+03       4      42 ..     354     382 ..     353     402 .. 0.62
   2 !   81.7   1.1   5.7e-26   6.4e-23       2     138 .]     746     888 ..     745     888 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.7
                 HCHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEECTCEE CS
       DHHA1   4 lneerkelekeleelkealaklkaeellekaeevkgvkv 42 
                 l+ e  ++e+ +  lke+++ +k    l++     g k+
  EGE27382.1 354 LRHEQHKIEQAI--LKEEEQFAKT---LSQ-----GLKL 382
                 667788888888..7777765542...222.....4444 PP

  == domain 2  score: 81.7 bits;  conditional E-value: 5.7e-26
                 HHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEECTCEEEEEECHCCHHHHHHHHHHHHHHTHGBTTCEEEEEEEECT...EEEEEEEESSH...SS CS
       DHHA1   2 eslneerkelekeleelkealaklkaeellekaeevkgvkvlvaevgeewdagalgiaadklksklkkpvivfvakeegd...kvkvsarskkd...gv 94 
                  +l ++++ lek++e+l+++ a+l a++l +++++++g+kvl+a v +++d+++l+++ d++kskl + +++++++   d   k++  a + k    ++
  EGE27382.1 746 AQLSDKNRHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATV-NGMDNKTLRTLSDDMKSKLADGIVILASVYTADgedKIAMTASVGKHltgKI 843
                 6889999***************************************.*******************9988888776655555899999999988***** PP

                 -HHHHHHHHHHHTTCCEEEE.TCEEEEEEEHCHHHHHHHHHHHHH CS
       DHHA1  95 dagelakeaaaklgggGGGH.dlAaGagipaekleealealeeai 138
                 +ag+++k++++ lgg+GGG+ d+A+G+ ++  +l+++   l ++i
  EGE27382.1 844 KAGDIIKHLSENLGGKGGGKpDFAQGGATDVANLPKLMTGLTDWI 888
                 **********************************99987777665 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       1.6   1.8e+03      17      26 ..      23      32 ..      23      34 .. 0.88
   2 !   60.7   0.3   9.2e-20     1e-16       1      44 []     659     709 ..     659     709 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.6
                ---SBGGGC- CS
    tRNA_SAD 17 tHvpnTgeIg 26
                tHvp+ + I 
  EGE27382.1 23 THVPSSSLIP 32
                9******995 PP

  == domain 2  score: 60.7 bits;  conditional E-value: 9.2e-20
                 EEEEEETT........EEEEESS---SBGGGC-SEEEECCECCCTCEEEEE CS
    tRNA_SAD   1 vrvvsiGd.......isvelCgGtHvpnTgeIgafkilseesiakglrRIy 44 
                 vrv s+G+       +s+elCgG Hv +Tg+Ig+fki+se++i++g+rRI+
  EGE27382.1 659 VRVLSMGTtdkdgkpFSIELCGGLHVTRTGDIGLFKIISEQGISAGVRRIE 709
                 8******87899**************************************7 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.7   4.2e+03      17      34 ..     254     271 ..     249     272 .. 0.86
   2 ?   -3.3   1.1       8.4   9.5e+03      80      99 ..     358     377 ..     351     392 .. 0.46
   3 !   16.7   1.3   5.8e-06    0.0065      75     131 ..     722     771 ..     717     804 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.7
  Jnk-SapK_ap_N  17 drygeevvkgLmPkvVkv 34 
                     +y +++ ++Lm+k V++
     EGE27382.1 254 GNYETDIFTKLMTKAVNI 271
                    67999**********997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.4
  Jnk-SapK_ap_N  80 leeiedqweeerkelqekve 99 
                     ++ie+++ +e++++ + ++
     EGE27382.1 358 QHKIEQAILKEEEQFAKTLS 377
                    33444444444444333333 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 5.8e-06
  Jnk-SapK_ap_N  75 raeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkk 131
                    + +++l ++ +q++ +r e+ ++v+ql ++nr+le       +q++rl++k a+l+ 
     EGE27382.1 722 QGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHLE-------KQIERLNQKFASLHA 771
                    55799******************************.......888888888777743 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.5   4.6e-05     0.052      66     144 ..     727     803 ..     716     820 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.6e-05
     DUF3552  66 reelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrqeLeris 144
                  ++l + +k +r+e+++   +l +k+  L+++ e l++k +sl+++  +l  + ++++ ++  + ++    ++ L  +s
  EGE27382.1 727 LNQLANQFKAKRHEIAQRVAQLSDKNRHLEKQIERLNQKFASLHAN--SLMDNLKNIHGQKVLIATVNGMDNKTLRTLS 803
                 4566677888888888888888888888888888888888888764..4456777777777777777777777666666 PP

>> DASH_Dad3  DASH complex subunit Dad3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.038        43       3      31 ..     360     392 ..     359     420 .. 0.87
   2 ?    8.7   0.4    0.0016       1.8      13      53 ..     746     790 ..     724     792 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.038
   DASH_Dad3   3 pleqevLdeYerLaenlkt....LaselkeLas 31 
                 ++eq +L+e e+ a++l +    L++el++L++
  EGE27382.1 360 KIEQAILKEEEQFAKTLSQglklLSQELDSLQQ 392
                 689********9999999998889999999976 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0016
   DASH_Dad3  13 erLaenlktLaselkeLasn....steeildgLReLErkiglvyT 53 
                 ++L+++ ++L++++++L+++     +++++d+L+++  +  l+ T
  EGE27382.1 746 AQLSDKNRHLEKQIERLNQKfaslHANSLMDNLKNIHGQKVLIAT 790
                 556666666777777777778877888*********999999988 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       9.9   1.1e+04      36      52 ..     374     390 ..     364     392 .. 0.50
   2 ?   13.7   0.5   4.5e-05      0.05      27      61 ..     737     771 ..     734     774 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.9
                 HHHHHHHHHHHHHHHHH CS
      bZIP_1  36 kaLekeNksLkseleel 52 
                 k+L++  k L++el++l
  EGE27382.1 374 KTLSQGLKLLSQELDSL 390
                 34444444444444444 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  27 eieeLerrvkaLekeNksLkseleelkkevekLks 61 
                 +  e ++rv++L+ +N  L +++e+l+ + ++L  
  EGE27382.1 737 KRHEIAQRVAQLSDKNRHLEKQIERLNQKFASLHA 771
                 556789***********************999875 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.9   0.00028      0.31      85     146 ..     722     784 ..     709     830 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00028
       Atg14  85 elkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkq.iaklqdaikrieqk 146
                 +  ++l ql  + ++k++++a++ ++l+++++ le+  ++l+++ +++  ++l d++k+i+ +
  EGE27382.1 722 QGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHLEKQIERLNQKFASLhANSLMDNLKNIHGQ 784
                 556788888888888888888888888888888877777777766654144566666655544 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1   0.00036      0.41      37      85 ..     722     770 ..     710     785 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00036
     DUF3450  37 kkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasle 85 
                 +  ++l++ +++ +a+ +++ +++++l+ +n++le++++ ++q++asl 
  EGE27382.1 722 QGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHLEKQIERLNQKFASLH 770
                 3334444444444444455555555555555555555555555555554 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.4     0.067        75      16      56 ..     351     392 ..     344     395 .. 0.79
   2 ?   10.3   1.8   0.00052      0.58      18      61 ..     726     769 ..     718     783 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.067
  Tropomyosin_1  16 aeeleekvKeleqenlekeqe.iksLtkknqqleeeveklee 56 
                    + +l+++  + eq  l++e++  k L++ +++l +e++ l++
     EGE27382.1 351 YPQLRHEQHKIEQAILKEEEQfAKTLSQGLKLLSQELDSLQQ 392
                    5677778888888887766552688*************9986 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00052
  Tropomyosin_1  18 eleekvKeleqenlekeqeiksLtkknqqleeevekleeklkea 61 
                    +l++ + +   ++ e  q +++L+ kn++le+++e+l++k    
     EGE27382.1 726 QLNQLANQFKAKRHEIAQRVAQLSDKNRHLEKQIERLNQKFASL 769
                    45555556666677777889999999999999999999987665 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.5   0.00015      0.17      41     116 ..     718     797 ..     710     804 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
     DUF1664  41 davesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevr.....edlseigedvesvkeaveglesk 116
                 + v++  kql+q+ ++ +a ++++++r++++ +k  + ++ ++ ++++ ++++     ++l++i+ + + + ++v+g+++k
  EGE27382.1 718 NYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHLEKQIERLNQKFASLHanslmDNLKNIHGQ-KVLIATVNGMDNK 797
                 55667789************************99999999999999888877611111445555554.3444667777766 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.5       1.8   2.1e+03      24      47 ..     353     376 ..     336     393 .. 0.71
   2 ?   11.9   1.3   0.00021      0.24       7      62 ..     730     782 ..     727     796 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.8
  Snapin_Pallidin  24 elrqsQeeLleqldrlnekLkele 47 
                      +lr +Q +  + + ++ e+++++ 
       EGE27382.1 353 QLRHEQHKIEQAILKEEEQFAKTL 376
                      677788888888888888777654 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00021
  Snapin_Pallidin   7 llellepkldeldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeya 62 
                      l + ++ k +e+ +++++l ++ ++L +q++rln+k+++l  +     + +lk+ +
       EGE27382.1 730 LANQFKAKRHEIAQRVAQLSDKNRHLEKQIERLNQKFASLHANSL---MDNLKNIH 782
                      6677888889999************************98877555...77776655 PP

>> DUF4600  Domain of unknown function (DUF4600)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2       0.9     1e+03      30      71 ..     351     392 ..     338     393 .. 0.83
   2 ?   -1.7   0.0       3.4   3.8e+03      47      73 ..     719     745 ..     710     749 .. 0.73
   3 ?   10.0   1.7   0.00077      0.86      11      58 ..     747     802 ..     737     811 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.9
     DUF4600  30 lekirgnpsdrlasirvleklteeelnqllkqLekekkslen 71 
                   ++r +++++ + i   e+   ++l+q lk L++e  sl++
  EGE27382.1 351 YPQLRHEQHKIEQAILKEEEQFAKTLSQGLKLLSQELDSLQQ 392
                 567888899998888889999999999999999999998885 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.4
     DUF4600  47 leklteeelnqllkqLekekkslenql 73 
                 + + ++++lnql +q +  ++++ + +
  EGE27382.1 719 YVQQGDKQLNQLANQFKAKRHEIAQRV 745
                 556677888888888888877776665 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00077
     DUF4600  11 tqlelNdqLekqiailkeklekir.gnpsdrlasirv.......leklteeelnql 58 
                  + ++N  Lekqi +l++k  +++ ++  d+l+ i+        ++ + +++l++l
  EGE27382.1 747 QLSDKNRHLEKQIERLNQKFASLHaNSLMDNLKNIHGqkvliatVNGMDNKTLRTL 802
                 56789*******************73445555555543333333666666666655 PP

>> DASH_Dad2  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.9      0.16   1.8e+02       5      41 ..     357     393 ..     353     406 .. 0.87
   2 ?   10.2   0.8   0.00068      0.76       2      42 ..     732     773 ..     731     784 .. 0.89
   3 ?   -2.5   0.1       6.5   7.3e+03      15      28 ..     797     810 ..     795     812 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.16
   DASH_Dad2   5 aeKraELeaLkqlrdlsdslakqleeLeeklstladg 41 
                 ++ + E + Lk+ ++ +++l++ l+ L+++l+ l++g
  EGE27382.1 357 EQHKIEQAILKEEEQFAKTLSQGLKLLSQELDSLQQG 393
                 56677888899999********************998 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00068
   DASH_Dad2   2 ariaeKraELea.LkqlrdlsdslakqleeLeeklstladgt 42 
                 ++ ++Kr+E ++   ql+d   +l+kq+e+L++k++ l+ ++
  EGE27382.1 732 NQFKAKRHEIAQrVAQLSDKNRHLEKQIERLNQKFASLHANS 773
                 57899****96439***********************99885 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 6.5
   DASH_Dad2  15 kqlrdlsdslakql 28 
                 k lr+lsd+++++l
  EGE27382.1 797 KTLRTLSDDMKSKL 810
                 6799*******998 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.6   0.00048      0.54      24      53 ..     735     764 ..     733     765 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00048
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  24 kakeeeleervkeLeeeNaqLrqkveqLek 53 
                 kak  e+++rv +L+ +N  L++++e L++
  EGE27382.1 735 KAKRHEIAQRVAQLSDKNRHLEKQIERLNQ 764
                 8999***********************987 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.52   5.9e+02      51      81 ..     359     390 ..     344     406 .. 0.50
   2 ?   -2.9   0.0       8.5   9.5e+03      32      46 ..     611     625 ..     602     636 .. 0.75
   3 ?    7.9   1.3    0.0037       4.1      19      70 ..     719     772 ..     712     805 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHH.HHHHHHHHHHHH..... CS
       DUF16  51 nkleqkvekqgeki.kelkveqkaqgeelnkv 81 
                 +k+eq++ k +e+  k l++  k  ++el+++
  EGE27382.1 359 HKIEQAILKEEEQFaKTLSQGLKLLSQELDSL 390
                 33333333333333122333333333333322 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.5
                 BHHHHHHHHHHHH.. CS
       DUF16  32 nkqrLkkieakvdkl 46 
                 ++q++ +ie+ v+++
  EGE27382.1 611 TEQNISQIETMVNQQ 625
                 788888999988855 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0037
                 B-BH..HHHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHH CS
       DUF16  19 YVTr..kqlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkve 70 
                 YV +  kqln+  ++ k++ ++i ++v++l  +  +le+++e++++k   l+++
  EGE27382.1 719 YVQQgdKQLNQLANQFKAKRHEIAQRVAQLSDKNRHLEKQIERLNQKFASLHAN 772
                 554333888888888888888888888888888888888888888887776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1246  (0.0694963); expected 358.6 (0.02)
Passed bias filter:                      884  (0.0493056); expected 358.6 (0.02)
Passed Vit filter:                       170  (0.00948185); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 5963.69
//
Query:       EGE27383.1  [L=41]
Description: hypothetical protein EA1_02928 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 317.31
//
Query:       EGE27384.1  [L=71]
Description: hypothetical protein EA1_02933 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.01   15.9   5.1      0.013   15.6   5.1    1.2  1  DUF4229       Protein of unknown function (DUF4229)
      0.044   14.1   3.6      0.053   13.8   3.6    1.2  1  YlaH          YlaH-like protein
      0.084   12.4   3.6      0.091   12.3   3.6    1.0  1  E1-E2_ATPase  E1-E2 ATPase
       0.15   12.4   1.6       0.15   12.4   1.6    2.2  2  DUF4199       Protein of unknown function (DUF4199)
       0.66    9.8   5.9        3.5    7.5   0.2    2.2  2  LapA_dom      Lipopolysaccharide assembly protein A domain
        1.8    8.3   6.4        2.5    7.9   6.4    1.3  1  PAP2          PAP2 superfamily


Domain annotation for each model (and alignments):
>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   5.1   4.3e-06     0.013      11      53 ..      14      58 ..       6      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.3e-06
     DUF4229 11 fvvltavillvarliglp..vpllvaallAlvvalplSmvllkkl 53
                f v+ +v++ va + g +  ++++ a+++++v++lp+ +++ k+l
  EGE27384.1 14 FTVIIGVLMIVAFVTGFDkgMHIIGAVIIGAVISLPVALFVTKRL 58
                55666666666666666699********************99987 PP

>> YlaH  YlaH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.6   1.8e-05     0.053       7      49 ..      10      53 ..       5      61 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
        YlaH  7 fllly.ilivvLsiivfklgFakkLpilkevivYilLalGslvL 49
                f +++ ++i vL+i+ f  gF k + i+ +vi+  ++ l ++++
  EGE27384.1 10 FSIAFtVIIGVLMIVAFVTGFDKGMHIIGAVIIGAVISLPVALF 53
                4455516667999********************99988766555 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.6     3e-05     0.091     118     172 ..       6      61 ..       2      70 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
                   HHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHH.HHHHHHHHS-TTHHHHHHHHHH CS
  E1-E2_ATPase 118 lgkvlvpvvlliallvflialllgkslaeallr.alallvaaiPcaLplavplala 172
                   ++++++++ ++i+ +++++a+++g +    ++  ++  +v+++P aL ++  la +
    EGE27384.1   6 FSAIFSIAFTVIIGVLMIVAFVTGFDKGMHIIGaVIIGAVISLPVALFVTKRLAQL 61 
                   77888888888888888888888888775555537888*********988777655 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   4.8      0.21   6.2e+02       3      19 ..      15      30 ..       5      37 .. 0.62
   2 ?   12.4   1.6   5.1e-05      0.15     147     167 ..      35      55 ..      30      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.21
     DUF4199  3 Glilglvwilifllily 19
                 +i+g+++i+ f+ + +
  EGE27384.1 15 TVIIGVLMIVAFV-TGF 30
                3566777777766.333 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.1e-05
     DUF4199 147 sflgnliiGlilsliiAlilk 167
                  ++g +iiG+++sl++Al++ 
  EGE27384.1  35 HIIGAVIIGAVISLPVALFVT 55 
                 5899***************96 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.2    0.0067        20      23      38 ..      12      27 ..       2      32 .. 0.54
   2 ?    7.5   0.2    0.0012       3.5      23      40 ..      36      53 ..      33      68 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0067
    LapA_dom 23 llvafgiGallgwlls 38
                ++++++iG+l+++ + 
  EGE27384.1 12 IAFTVIIGVLMIVAFV 27
                5555555555444433 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0012
    LapA_dom 23 llvafgiGallgwllslw 40
                +++a++iGa++ + ++l+
  EGE27384.1 36 IIGAVIIGAVISLPVALF 53
                889999999998877775 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.4   0.00084       2.5      87     129 ..      11      56 ..       2      63 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00084
        PAP2  87 lalillllavlvalsRlyl...gvHflsDvlaGlliGialaalayr 129
                  ++++++  vl++++ +     g+H   +v++G++i++ +a+++++
  EGE27384.1  11 SIAFTVIIGVLMIVAFVTGfdkGMHIIGAVIIGAVISLPVALFVTK 56 
                 4566666666666666664445****************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1059  (0.0590663); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 571.70
//
Query:       EGE27385.1  [L=462]
Description: adenylosuccinate lyase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-65  219.3   0.1    1.1e-64  218.8   0.1    1.2  1  Lyase_1        Lyase
    2.5e-46  156.5   1.5    4.9e-46  155.6   0.0    2.3  3  ASL_C          Adenylosuccinate lyase C-terminal
  ------ inclusion threshold ------
      0.072   13.0   0.4       0.16   11.9   0.4    1.5  1  IL2            Interleukin 2
      0.091   13.2   0.6       0.29   11.6   0.6    1.8  1  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.8   0.1   2.4e-68   1.1e-64       1     305 [.      14     311 ..      14     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: 218.8 bits;  conditional E-value: 2.4e-68
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTT... CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellg... 96 
                 gr+  k d+l+   +e ++ ++r++ ++i++l+al+ +    ++++  + a+  + lde+++++++++++++k i+++++++v++ ++++++e ++   
  EGE27385.1  14 GRYASKCDALRPYLSEFGLIHARVT-VEIRWLQALANHPQVIEIQP--FSAKTNQRLDEIVQNFSEENALRIKEIERTTNHDVKA-VEYFLKEQIAdid 108
                 89999********************.8888****************..*************************************.******8888899 PP

                 HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTC CS
     Lyase_1  97 ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllv 195
                 e++++ +++h++++s+D+++++++l+lk+++ ++L + ++qLida+   a+ +++ ++++rTh+q A P+tlg+e++  ++a++ +r+ l + ++ +l+
  EGE27385.1 109 ELKNAGEFIHFACTSEDINNLSHALMLKASR-DVLASSMQQLIDAIATLAQTHANQPMLSRTHGQTASPTTLGKEMA--NVAYRLHRQ-LTQFNHVELL 203
                 99*****************************.99****************************************555..555555555.66666677** PP

                 EETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTT CS
     Lyase_1 196 ellgggtavgtglnadpefaelvakelakvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPg 293
                 ++++g++++++++ ++++      +  ++vt+l+ + +p+++ +++++D+++el++al++++t L++f +D+++++s  +g+++++l  +e GSS+MP+
  EGE27385.1 204 GKINGAVGNYNAHLSAYPNIDWADHAQKFVTSLGlTFNPYTT-QIEPHDYMAELFDALRRFNTILIDFNRDVWGYIS--LGYFKQKLKDGEVGSSTMPH 299
                 *****************955555555569*****66666666.**********************************..******************** PP

                 TEBTHHHHHHHH CS
     Lyase_1 294 KvNPvqlElltg 305
                 KvNP+++E+  g
  EGE27385.1 300 KVNPIDFENSEG 311
                 ********9654 PP

>> ASL_C  Adenylosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.93   4.2e+03      74      96 ..      81     103 ..      62     112 .. 0.74
   2 ?   -2.0   0.0      0.82   3.7e+03      49      95 ..     136     152 ..     124     197 .. 0.61
   3 !  155.6   0.0   1.1e-49   4.9e-46       1     115 []     330     447 ..     330     447 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.93
                 HHHHHHTTS---HHHHHHHHHCS CS
       ASL_C  74 klkeltrgkkitkeslkefiesl 96 
                 ++ke+ r+++ + ++++ f++++
  EGE27385.1  81 RIKEIERTTNHDVKAVEYFLKEQ 103
                 67888888888888888887765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.82
                 HT-GGGGHHHHHHHHHHTT-TTHHHHHHHHHTTS---HHHHHHHHHC CS
       ASL_C  49 denwevlaEaiqtvlrregiekpYeklkeltrgkkitkeslkefies 95 
                 +++  vla ++q ++                                
  EGE27385.1 136 KASRDVLASSMQQLID------------------------------A 152
                 4445555555554443..............................2 PP

  == domain 3  score: 155.6 bits;  conditional E-value: 1.1e-49
                 -STT--TCHHHHHTTCHHHHHHHHHHHHHHHHHHCCEEE-HHHHHHHHHT-GGGGHHHHHHHHHHTT-TTHHHHHHHHHTTS---HHHHHHHHHCS... CS
       ASL_C   1 SrlQRDLtdStvlRnlgvalahslialksllkglsklevneealaedLdenwevlaEaiqtvlrregiekpYeklkeltrgkkitkeslkefiesl... 96 
                 Sr+QRDLtdStvlRn+gv++a+slia++++lkg++kle+n+++l+edL++++evlaE+iqtv+rr++iekpYeklk+ltrg+++t+e + +fi++    
  EGE27385.1 330 SRWQRDLTDSTVLRNMGVGFAQSLIAFDACLKGIGKLEINANRLNEDLHNAQEVLAEPIQTVMRRYNIEKPYEKLKTLTRGQAMTREMMLDFIHGDeln 428
                 9********************************************************************************************987333 PP

                 -S-HHHHHHHHC--CCC-- CS
       ASL_C  97 evseeakeeLkaltpatYi 115
                 +v++++k++L +ltpatYi
  EGE27385.1 429 AVPASEKKRLADLTPATYI 447
                 499***************8 PP

>> IL2  Interleukin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   3.5e-05      0.16      57     108 ..     106     157 ..      52     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.5e-05
                 EEE-BSS--SGGGHHHHHHTHHHHHHHHHHHHHHSS--TTHHHHHHHHHHHH CS
         IL2  57 klylPkkatelkhlqcleeelkpleevlnlaqsknfeledikelisninvtv 108
                 ++   k+a e+ h+ c  e+++ l + l l+ s+++ ++ +++li+ i  ++
  EGE27385.1 106 DIDELKNAGEFIHFACTSEDINNLSHALMLKASRDVLASSMQQLIDAIATLA 157
                 3455699***************************************998765 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.6   6.4e-05      0.29      15      90 ..     142     216 ..     139     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.4e-05
  T7SS_ESX_EspC  15 laakhdevaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaaasteLadkLraAAaaYeat 90 
                    la+ +++  + ia++++++  ++  ++ +hG   ++t++  ++a  a r   + ++ ++ eL  k + A ++Y a+
     EGE27385.1 142 LASSMQQLIDAIATLAQTH-ANQPMLSRTHGQTASPTTLGKEMANVAYRLHRQLTQFNHVELLGKINGAVGNYNAH 216
                    899****************.8888999**********************99999999999*999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3294.67
//
Query:       EGE27386.1  [L=398]
Description: hypothetical protein EA1_02943 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.024   14.3   2.3      0.024   14.3   2.3    4.5  4  DUF4203        Domain of unknown function (DUF4203)
        6.6    7.1  20.4       0.13   12.6   5.4    4.3  3  DUF4149        Domain of unknown function (DUF4149)


Domain annotation for each model (and alignments):
>> DUF4203  Domain of unknown function (DUF4203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.2    0.0015        13      44      98 ..      25      79 ..       2      98 .. 0.74
   2 ?    1.1   8.7      0.03   2.7e+02      24      85 ..     118     176 ..     112     203 .. 0.61
   3 ?   -8.1  16.3         2   1.8e+04      58      98 ..     224     270 ..     176     322 .. 0.57
   4 ?   14.3   2.3   2.7e-06     0.024       6      48 ..     336     378 ..     331     387 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0015
     DUF4203 44 vvvlp..sslvqgaslvaalvvGllgGllallfwelglfllgalgGlllallilsll 98
                   +p  s   q + ++a + vG+++G+ +   +e+  +++++    +++++il +l
  EGE27386.1 25 N--PPkySFNHQKIIIIALAYVGVITGAGLSSGQEIFQYFASFGKMGMIGVVILGIL 79
                2..22458888999999************9999999999999977778888888877 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.03
     DUF4203  24 tlflsgfllgsllvlvlilkvvvlpsslvqgaslvaalvvGllgGllallfwelglfllgal 85 
                 +l++sgf+lg+++++ +  +++   +++   ++l+aal++ l++G+ +l f +++ +++ + 
  EGE27386.1 118 SLIISGFTLGFVMIAGAGANLN---QEFGAPTWLGAALCSLLVIGISMLNFEKVTAVIGIFT 176
                 5666777777766666666664...5566666666666666666666666666666655553 PP

  == domain 3  score: -8.1 bits;  conditional E-value: 2
     DUF4203  58 vaalvvGllgGll....allfwel..glfllgalgGlllallilsll 98 
                 ++++++G+ ++++    ++++ e+  g fl+gal Gl+ a++ ++++
  EGE27386.1 224 ALCIMTGASMAFVlggkTMYVGEAarGGFLGGALIGLISACTAFTIF 270
                 44445555444441111555544322345555555555555544444 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 2.7e-06
     DUF4203   6 lillGlvlcffGyrlfkltlflsgfllgsllvlvlilkvvvlp 48 
                 l+l+G++l f+G++ + + +f + +++g+ll +vl+l + ++ 
  EGE27386.1 336 LVLVGFILSFAGFKKLVSIMFPIIGYIGMLLLVVLLLAWIKNH 378
                 789*********************************9998765 PP

>> DUF4149  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.27   2.5e+03      38      45 ..      59      66 ..      31     104 .. 0.64
   2 ?   -3.1   5.0       1.2     1e+04      38      85 ..     142     164 ..      61     195 .. 0.64
   3 ?   12.6   5.4   1.5e-05      0.13      27      74 ..     345     393 ..     251     395 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.27
     DUF4149 38 Fplyfglg 45
                F++++ +g
  EGE27386.1 59 FQYFASFG 66
                44444322 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.2
     DUF4149  38 Fplyfglglalsvlllltevavgseklaseellqlllllvvllltlln 85 
                 F + ++lg+al++ll++                          +++ln
  EGE27386.1 142 FGAPTWLGAALCSLLVI-------------------------GISMLN 164
                 33334444443333333.........................333333 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 1.5e-05
     DUF4149  27 rhqfgelqsklFplyfglglalsvlllltevavg.seklaseellqlll 74 
                  + f +l+s +Fp+  ++g++l+v+lll  ++++ + k+++ ++ ++++
  EGE27386.1 345 FAGFKKLVSIMFPIIGYIGMLLLVVLLLAWIKNHkKIKTERINRRHIYA 393
                 456999****************************666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1141  (0.0636399); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 2724.57
//
Query:       EGE27387.1  [L=392]
Description: tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-132  441.8   0.0   1.7e-132  441.6   0.0    1.0  1  tRNA_Me_trans  tRNA methyl transferase
    2.4e-07   30.1   0.0    3.7e-06   26.3   0.0    2.1  2  NAD_synthase   NAD synthase
    0.00027   20.6   0.0     0.0004   20.0   0.0    1.2  1  ThiI           Thiamine biosynthesis protein (ThiI)
  ------ inclusion threshold ------
      0.032   13.9   0.0      0.045   13.4   0.0    1.2  1  Asn_synthase   Asparagine synthase
      0.033   13.7   0.1      0.089   12.3   0.1    1.7  2  QueC           Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  441.6   0.0  4.7e-136  1.7e-132       2     356 .]      21     384 ..      20     384 .. 0.97

  Alignments for each domain:
  == domain 1  score: 441.6 bits;  conditional E-value: 4.7e-136
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeqgyevigvflklweeedeegkeccaeedlkdaervaeklgiplevvdfekeykekvfeefleeyeeGrTPnPdvl 97 
                    kv+v++SgGVDSsv+a+ll+++g++v+g+f+k+wee+d  +  c+a +dl+da++va+k+gi+l++ +f+ ey+++vfe+fl ey++GrTPnPd+l
     EGE27387.1  21 KVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE-YCTAMTDLADAQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDIL 115
                    8***********************************88887.****************************************************** PP

  tRNA_Me_trans  98 CNkeiKfgallekake...elgadalatGHYarvsleeeknevellrakdkkkDQsyfLsqlskealekllfPlgeltKeevrkiAkeaglavaek 190
                    CNkeiKf+a+l++a+     lgad +atGHYar+ ++ ++++++llr+ d +kDQsyfL ++  ++++k+lfP+gel+K++vr+iA++++l +a+k
     EGE27387.1 116 CNKEIKFKAFLDYASGpqfGLGADFIATGHYARRGFS-QDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFPIGELEKPQVRAIAQKYDLITANK 210
                    **************9888899****************.58******************************************************** PP

  tRNA_Me_trans 191 kdSqgiCfigkrkfkdflkkyleekeGkiieietgevlGeheGllsyTiGqrkGlkiag....aeeplyVvekdakkntvlvgkgedeealaskkl 282
                    kdS+giCfig+rkfkdfl++yl++++G+i++ + g  +G+h+Gl++yTiGqr G++i+g     eep++V++kd+ +n+++vg+g+d+  l+s++l
     EGE27387.1 211 KDSTGICFIGERKFKDFLQQYLPAQKGDIYTDD-GIKIGTHDGLMYYTIGQRGGIGIGGvanrPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305
                    ******************************999.*************************9888899****************************** PP

  tRNA_Me_trans 283 rvkelnwlae...elkekealelevkvrhkqelvkakvelked..etvevkldekvravtpGQaavlYkgdevLGggii 356
                    ++ +l w      ++  ++ +++++k+r++q++++++v   ++  +tv+v +d+++ravt+GQ++v+Y+gd++LGgg+i
     EGE27387.1 306 TAYKLDWGIAppvQIFGEQGFRCTAKTRYRQSDQDCTVFALDEtgDTVKVVFDDAQRAVTQGQSVVFYDGDICLGGGVI 384
                    *******9887887777889****************9988777679*******************************98 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     1e-09   3.7e-06      18      82 ..      19      89 ..       4     111 .. 0.73
   2 ?    1.3   0.0     0.043   1.6e+02     144     166 ..     181     203 ..     173     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1e-09
                  TSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSSTTH........HHHHHHHHHHHHHTSEEEE---H CS
  NAD_synthase 18 akgvvlGlSGGvDSslvaalavkalgkenvlalllPssvsse........edvedalalaenlgievktidik 82
                    +v++G+SGGvDSs+ a+l ++a    +v +l + +  +++         d+ da+a+a+++gi+ +t + +
    EGE27387.1 19 DIKVIVGMSGGVDSSVSAVLLQQAG--FHVEGLFMKNWEEDDgseyctamTDLADAQAVADKIGIKLHTANFA 89
                  469********************96..7899999964333321112222278999999999999999988764 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.043
                   T--SBETTTTS-HHHHHHHHHHT CS
  NAD_synthase 144 gaadlapiaellKtevkeLakel 166
                   +a  l pi+el K +v+++a++ 
    EGE27387.1 181 IAKTLFPIGELEKPQVRAIAQKY 203
                   567899************99875 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.1e-07    0.0004       5      73 ..      21      89 ..      18     106 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.1e-07
        ThiI  5 kvlaLlSgGiDSpVaaylllkRGcrvvlvhlknep.gtseeaiekveklaellaeyqtslevklvvvdfk 73
                kv++ +SgG+DS V+a ll + G++v+ +++kn     + e    + +la+  a  +  + +kl + +f 
  EGE27387.1 21 KVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEeDDGSEYCTAMTDLADAQAVADK-IGIKLHTANFA 89
                688889*************************985414456666677777776666663.66777777664 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.3e-05     0.045      17      82 ..      19      91 ..      15     145 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
  Asn_synthase 17 dvpvGalLSGGlDSSliaalaarqsksplktFsigf.....ee..kgsdeakyakevaehlgtehtelvltee 82
                  d +v + +SGG+DSS+ a l+++   +    F   +     +e   ++ +++ a++va+++g++ ++  +  e
    EGE27387.1 19 DIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWeeddgSEycTAMTDLADAQAVADKIGIKLHTANFAME 91
                  66677789*******999999997654444566666654442378999****************766655543 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.5e-05     0.089       1      62 [.      21      84 ..      21      92 .. 0.73
   2 ?   -2.2   0.0      0.67   2.4e+03     154     186 ..     184     220 ..     173     225 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.5e-05
                EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEE.SS-TTSHH.HHHHHHHHHHT--.-EEEEE-G CS
        QueC  1 kavvllSGGlDSttvlalakkegkevealtfd.Ygqrhkke.leaakkiakelgveehkildld 62
                k++v +SGG+DS++ ++l +++g +ve l ++ +++   +e   a++++a+++ v+++  ++l+
  EGE27387.1 21 KVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKnWEEDDGSEyCTAMTDLADAQAVADKIGIKLH 84
                68999*********************99877514444444414556677777777666656555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.67
                 EE-TTTT--HHHHHHHHHHTT....HHHHH-B-STTS CS
        QueC 154 ieaPlidlsKaeivklgkelg....vpleetlsCYeg 186
                    P+ +l+K ++ +++++++     + + t  C+ g
  EGE27387.1 184 TLFPIGELEKPQVRAIAQKYDlitaNKKDSTGICFIG 220
                 5569999999999999999995443334455566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3084.16
//
Query:       EGE27388.1  [L=178]
Description: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-63  214.3   0.3    1.2e-63  214.0   0.3    1.0  1  YgbB      YgbB family


Domain annotation for each model (and alignments):
>> YgbB  YgbB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.0   0.3   6.7e-68   1.2e-63       1     154 [.      19     172 ..      19     173 .. 0.99

  Alignments for each domain:
  == domain 1  score: 214.0 bits;  conditional E-value: 6.7e-68
                 EEEEEEEEEEEEEEECEEEETTEEEEESEEEESSSTCHHHHHHHHHHHHHHTT--SHHHHSTTTCGGCTTTCHHHHHHHHHHHHHHTTEEEEEEEEEEE CS
        YgbB   1 iriGlGyDvHrlaegrklvlgGveieaekgllahSDgDvllhAlvDAllGalalgdigelfpdtdpkykgadSaelLeevlellkekgykivnvdvtii 99 
                 i+iG+G+DvH +++g+ ++lgGv+i++++g++ahSDgDvllhAl DAllGalalgdig++fpdtd++y+gadS++lL++v++l+++kgy+++n+d+t+i
  EGE27388.1  19 IKIGQGIDVHSFTQGDFVMLGGVRIPHSHGIKAHSDGDVLLHALSDALLGALALGDIGQHFPDTDDAYQGADSKVLLKHVYALVQAKGYTLGNADMTVI 117
                 579************************************************************************************************ PP

                 CSSSTCGGGHHHHHHHHHHHHTS-GGGEEEEEEETTTSHHHHTTSEEEEEEEEEE CS
        YgbB 100 aekpklapykeamrenlakllgleeeqvsvkattteklgfvGrgegiaalavvll 154
                 +e pkl+p++ amre +a +lg+++++vs+katt+ek+g +Grgegi a a+vll
  EGE27388.1 118 CELPKLSPHNLAMRECIAGVLGVSVDCVSIKATTNEKMGWIGRGEGIWASATVLL 172
                 *****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1350.86
//
Query:       EGE27389.1  [L=188]
Description: isochorismatase hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-34  119.0   0.0      3e-34  118.7   0.0    1.1  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.0   1.7e-38     3e-34       1     175 []       6     181 ..       6     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 1.7e-38
  Isochorismatase   1 talvviDmqndfveegvkeseeisavven.inkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaplegdvvvdK 93 
                      tal++iD+q++f++e+++  ++ +   e+ + +ll ++r++++p++++r++               + ++ p   g   ++  +pl+ ++v++K
       EGE27389.1   6 TALLLIDLQQGFYDEAYWGGHRNNPHCEQvCFELLSHWREQDLPIFHIRHSST-----------TPQSRLHPTHQGFNWIELTKPLPCEHVITK 88 
                      89***********7777777776666665167*********************...........999999************************ PP

  Isochorismatase  94 trfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaals..........pel.hdaalkrlkqafatvitted 175
                      +  s+f gtdl+++L ++gi+t+vl+G++t+ CV +tar a++lG++++vvsD++a+++           +l h+ +l++l   fatv+t+++
       EGE27389.1  89 HVNSGFIGTDLQQQLTKAGIDTLVLVGLTTNHCVSTTARMAANLGFTTFVVSDGTATFDrmgatgerfdSQLvHEISLANLHGEFATVLTSAE 181
                      ********************************************************************97778*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1416.55
//
Query:       EGE27390.1  [L=111]
Description: glutaredoxin-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-17   62.2   0.0      5e-17   61.9   0.0    1.1  1  Glutaredoxin  Glutaredoxin
     0.0076   16.6   0.0      0.012   16.0   0.0    1.3  1  GST_N_3       Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   5.6e-21     5e-17       1      60 []      21      85 ..      21      85 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 5.6e-21
                  EEEEES.....TSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin  1 vvlftk.....ptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgkhv 60
                  v+l++k     p+C+++++a+++L++ g +f+++++++++eir  l  +++++t+Pq++++g+++
    EGE27390.1 21 VLLYMKgtpqfPQCGFSARAIEVLTQIGRPFAFVNILENPEIRSTLPLIANWPTFPQLWVNGELI 85
                  789***********************************************************987 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.4e-06     0.012       3      65 ..      30      93 ..      29      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-06
                S-TTSHHHHHHHHHHHHHT--EEEE---TTTT.HHHHHHH-TT--SSEEETTS-EEESHHHHHH CS
     GST_N_3  3 gfpaSpyarrvrlaLnekglpvevvevtpgeh.deellaknplgkvPvLeddgealtdSlaIid 65
                 fp + ++ r+ ++L++ g p+++v++ +    + +l+ +    ++P L  +ge + +S+ I++
  EGE27390.1 30 QFPQCGFSARAIEVLTQIGRPFAFVNILENPEiRSTLPLIANWPTFPQLWVNGELIGGSDIILQ 93
                5899***********************87777788999999*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 890.45
//
Query:       EGE27391.1  [L=116]
Description: hypothetical protein EA1_02993 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.18   11.6   0.6         22    4.9   0.1    2.8  3  RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0012        22      52      71 ..       4      23 ..       1      27 [. 0.87
   2 ?    3.6   0.0    0.0031        56      19      37 ..      50      68 ..      46      77 .. 0.84
   3 ?   -0.3   0.1     0.054   9.6e+02       3      21 ..      83     101 ..      81     114 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0012
                 S-HHHHHHHHHHHHHHHHHH CS
  RNA_pol_L_2 52 nnpleaLkkalkdlldicde 71
                 ++ ++a+k+a +++l+ic++
   EGE27391.1  4 QTKIQAIKQASEQILAICET 23
                 57799*************97 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0031
                 HHHTTSTTEEEEEEECSST CS
  RNA_pol_L_2 19 hlllknpsVefagYkipHP 37
                 + ++ +++V  agY i++ 
   EGE27391.1 50 QRVMADEDVIGAGYLIDFA 68
                 56899*********99876 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.054
                  EEEEES--HHHHHHHHHHH CS
  RNA_pol_L_2   3 tfeingEDhTLgnlLrhll 21 
                  ++ +n+ D TL   + + l
   EGE27391.1  83 SLILNKGDETLKTTMLNKL 101
                  5678888888877665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 889.97
//
Query:       EGE27392.1  [L=112]
Description: 2Fe-2S ferredoxin [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-12   47.2   3.6    2.2e-12   46.8   3.6    1.2  1  Fer2      2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.012   15.6   1.0      0.032   14.3   1.0    1.7  1  Fer2_4    2Fe-2S iron-sulfur cluster binding domain
       0.23   10.2   0.0       0.28    9.9   0.0    1.1  1  DCD       2'-deoxycytidine 5'-triphosphate deaminase (DCD)


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   3.6   3.6e-16   2.2e-12       2      77 ..      11      91 ..      10      92 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 3.6e-16
                ETTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSS.SSTTEEEEEESCE.CTTSSSSTHHHHHTTEE.....EEGGGSEE CS
        Fer2  2 tidgkevevevadgettlldaaeenggidipysCgggg.CgtClvevlegev.qsdetelegeeldegkl.....rlaCqtiv 77
                +i++k+ ++eva+ge+ l +a+ e  gi ++++C +++ C tC+v v +g    ++  ++eg+ ld+++      rl+Cq+i+
  EGE27392.1 11 EICPKGATIEVAEGEN-LCQAMLER-GIKVEHACDMSKaCTTCHVVVRQGFDsLEEMDDIEGDLLDRAWGlepdsRLSCQCII 91
                5789************.******98.**********999******9998866543467788888888777***********97 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.0   5.3e-06     0.032      10      55 ..      16      52 ..      12      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.3e-06
      Fer2_4 10 GkevtvpeGdtvasAllangvdvprsckygrprgelcaggeCrnCl 55
                G +++v eG+ + +A+l+ g++v + c             +C +C 
  EGE27392.1 16 GATIEVAEGENLCQAMLERGIKVEHACDM---------SKACTTCH 52
                8899*******************999987.........33444444 PP

>> DCD  2'-deoxycytidine 5'-triphosphate deaminase (DCD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   4.7e-05      0.28     138     185 ..      10      57 ..       8      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4.7e-05
         DCD 138 leisprsFsilvrkGsrLsqirfrrgeaklsdeelkelhaeeklvkae 185
                  ei+p+  +i v +G++L q  ++rg ++ ++ ++++  ++ ++v  +
  EGE27392.1  10 HEICPKGATIEVAEGENLCQAMLERGIKVEHACDMSKACTTCHVVVRQ 57 
                 69************************9999999988887777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 911.97
//
Query:       EGE27393.1  [L=619]
Description: chaperone protein HscA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-159  532.1   0.8   1.7e-159  531.9   0.8    1.0  1  HSP70          Hsp70 protein
    4.9e-20   71.6   0.4    3.9e-18   65.4   0.4    2.2  2  MreB_Mbl       MreB/Mbl protein
  ------ inclusion threshold ------
        0.1   12.3   0.1       0.46   10.2   0.0    2.1  2  FAD_binding_4  FAD binding domain
       0.29   10.8   2.6        4.1    7.1   0.1    3.1  3  Raco_middle    RACo middle region


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  531.9   0.8  3.7e-163  1.7e-159       2     596 ..      22     601 ..      21     604 .. 0.93

  Alignments for each domain:
  == domain 1  score: 531.9 bits;  conditional E-value: 3.7e-163
                 EEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTT.SE.EETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHT.TXSSEEEEETTSBE CS
       HSP70   2 iGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkk.er.lvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeik.elpykvvkkengka 97 
                 +GiDLGtt s+vav+++g+ ev+a  ++    Psvv ++kk  r +vG+ A +  + + knt++s+Kr++Gr+ sd      ik + py++  +++  +
  EGE27393.1  22 LGIDLGTTHSLVAVVRSGRSEVLAFGQSP-LLPSVVYYGKKsSRpIVGNDALNY-ADDHKNTIISAKRFMGRAKSD------IKfSHPYDLSGNHQTMP 112
                 8***********************99986.89********98543899999875.6899*************7776......331469***99988888 PP

                 EEEEEETTEEEEHHHHHHHHHHHHHHHHHHHHT.SBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXS CS
       HSP70  98 vveveaagekftpeqisamvLkklketaeaylg.kkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGg 195
                  + ++ +ge  +p + sa +L++lk++a a l  ++++ avitvPaYf+daqR atkdA++ AGLnvlR++NepTAaa+aYG+dk+  + n lvyDlGg
  EGE27393.1 113 AILTA-QGE-KSPVETSAHILRHLKNHAAAALPpDSIQGAVITVPAYFDDAQRAATKDAATAAGLNVLRLLNEPTAAAIAYGIDKNTAQGNYLVYDLGG 209
                 88777.444.59***************999986266*************************************************************** PP

                 SXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHH.HSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEE CS
       HSP70 196 gtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkk.egidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekl 293
                 gtfdvS+l+l++Gvfev+aT g+++lGG+d D+ ++++l+++ + +  +id +++    +rl + a+  K++LSs+ +  i++ei         ++++l
  EGE27393.1 210 GTFDVSLLRLSEGVFEVLATGGNSALGGDDIDRLIAHWLIQSSHLTpADIDETEK----SRLAKLAKTYKQALSSQDSVVIEVEIGG-----ILVTQTL 299
                 ***************************************9887654256665555....899999**********666666666655.....55699** PP

                 EHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS CS
       HSP70 294 sRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpL 392
                 + + + e+++++++rt++++e++++dak++k+++++++lvGGstR+P +q++v  +f++ p  ++npDe+vaiGA + a+ l   ++ + llllDvtpL
  EGE27393.1 300 NNDMLSEIIQPVIRRTIQSCEQVMRDAKIDKSNLNDIILVGGSTRMPVIQNAVTAYFERTPLCNINPDEVVAIGAGIAADQLIN-QSNETLLLLDVTPL 397
                 **********************************************************************************99.88999********* PP

                 -EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCE CS
       HSP70 393 slgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgke 491
                 slgiet+gg+++ +i+rnt ip  + qvf+t +d+qt + i+v+qger++v++++ l++fel+gipp+++G  +ieVt+ idanG ltvsa++++t++ 
  EGE27393.1 398 SLGIETMGGLVEVIIPRNTPIPVTRRQVFTTHQDGQTGMIIQVVQGERDTVANCRGLARFELHGIPPMKAGLARIEVTYAIDANGQLTVSARETTTDII 496
                 *************************************************************************************************** PP

                 EEEEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHH CS
       HSP70 492 eeitieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeeekeeieakteelkkvv 590
                 ++i+++ s glsee+ e++ +    +a+edk++++ ie+k ea++ +  l+++l+e ++ +s++e+++++++++   ++l++++k++i +++++lk  +
  EGE27393.1 497 SQIQVSPSYGLSEEQQEQLLQAGFIHAAEDKAARMLIETKVEAQRELLALQSALDEFTDLLSDEEQTNLRHHMQVTADSLNTDDKAAIDEAIKALKVHS 595
                 ***********************************************************************************************9988 PP

                 HHHHHH CS
       HSP70 591 ekiaek 596
                  ++a+ 
  EGE27393.1 596 DHFASV 601
                 877665 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0041        18       3      46 ..      21      71 ..      19     103 .. 0.67
   2 !   65.4   0.4   8.6e-22   3.9e-18      72     322 ..     125     381 ..     112     386 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0041
                EEEEEE-SSEEEEEE..TTTEEEEE......EES-EEEETTT--EEEESHHH CS
    MreB_Mbl  3 dlgiDLGtantlvyv..kgkgivln......epsvvAikkktkkvlavGeeA 46
                 lgiDLGt++ lv v  +g+  vl        psvv + kk+++   vG++A
  EGE27393.1 21 ALGIDLGTTHSLVAVvrSGRSEVLAfgqsplLPSVVYYGKKSSRP-IVGNDA 71
                68********99965225666676522222236777666655443.356665 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 8.6e-22
                 HHHHHHHHHHHHHHHTSS-S.S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-E.EEEEE-SS-EEEEEEETTEEE CS
    MreB_Mbl  72 evaeellkyfikkvkkkksl.skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgn.mvvdiGggttevavislggiv 168
                 e+ +++l+++ ++++ +    s +  vi+vP   ++ +r A k+aa+ aG +   l++ep aAAi  g++ + ++gn +v d+Gggt +v+++ l++ v
  EGE27393.1 125 ETSAHILRHLKNHAAAALPPdSIQGAVITVPAYFDDAQRAATKDAATAAGLNVLRLLNEPTAAAIAYGIDKNTAQGNyLVYDLGGGTFDVSLLRLSEGV 223
                 566667777766666643332556789*************************************************95688************998755 PP

                 EE.....EEES-SHHHHHHHHHHH.HHHHHSEE--HHHHHHHHH.HH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH CS
    MreB_Mbl 169 ts.....ksvrvaGdeldeaiiky.irkkynlliGertaekiki.eigsavkeeeeekmeikGrdlvtglpkevevsseevrealkepvsaiveavkev 260
                            ++Gd++d  i ++ i++++       ++ek ++ ++++++k++ +++ ++     + g+  + ++++++++e ++ ++++ +++ ++v
  EGE27393.1 224 FEvlatgGNSALGGDDIDRLIAHWlIQSSHLTPADIDETEKSRLaKLAKTYKQALSSQDSVVIEVEIGGILVTQTLNNDMLSEIIQPVIRRTIQSCEQV 322
                 431111146689**********982455665555566666665426888888887778888888889******************************** PP

                 HHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC-H CS
    MreB_Mbl 261 LektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtgkvlekl 322
                 +++++ + +     + i+l+GG++ +  +++ ++  ++    +  +p ++va G+g+++++l
  EGE27393.1 323 MRDAKIDKSN---LNDIILVGGSTRMPVIQNAVTAYFERTPLCNINPDEVVAIGAGIAADQL 381
                 ***9988654...5789***************************************999876 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.55   2.5e+03      76      76 ..     266     266 ..     224     300 .. 0.51
   2 ?   10.2   0.0    0.0001      0.46      58     104 ..     363     408 ..     348     410 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.55
                    H CS
  FAD_binding_4  76 d 76 
                    +
     EGE27393.1 266 R 266
                    2 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0001
                    EEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBHHHTT CS
  FAD_binding_4  58 eideeegtatveaGvtlgdlvealaakglllglepgsgipgtvGGai 104
                    +i++ + ++ ++aG+  ++l ++ +++ lll + p+s+   t+GG++
     EGE27393.1 363 NINP-DEVVAIGAGIAADQLINQSNETLLLLDVTPLSLGIETMGGLV 408
                    5677.899*************************************87 PP

>> Raco_middle  RACo middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.036   1.6e+02       1      21 [.      20      40 ..      20      49 .. 0.78
   2 ?    7.1   0.1   0.00092       4.1      51     112 ..     300     361 ..     274     381 .. 0.83
   3 ?   -0.9   0.1      0.26   1.2e+03      36      81 ..     490     539 ..     472     548 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.036
  Raco_middle  1 yGlavDiGtTtvvaaLvdlet 21
                 y+l +D+GtT+  +a+v   +
   EGE27393.1 20 YALGIDLGTTHSLVAVVRSGR 40
                 8899******98888876555 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00092
  Raco_middle  51 eeegleklqkavveeinelieelleeagiekeeiyevvvagNttMlhlllgldpkslakapy 112
                  +++ l+++ + v++   +  e+++++a+i+k+++++++++g +t + ++ +  +++ +++p 
   EGE27393.1 300 NNDMLSEIIQPVIRRTIQSCEQVMRDAKIDKSNLNDIILVGGSTRMPVIQNAVTAYFERTPL 361
                  466777777778888888899******************99999888888887777777776 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.26
  Raco_middle  36 kyGeDvlsRiayake....eeegleklqkavveeinelieelleeagiek 81 
                  +  +D++s i+++ +    ee++ + lq   +++ ++  +++l e+++e+
   EGE27393.1 490 ETTTDIISQIQVSPSyglsEEQQEQLLQAGFIHAAEDKAARMLIETKVEA 539
                  45679999998765433325666677777777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 4807.03
//
Query:       EGE27394.1  [L=172]
Description: Fe-S protein assembly co-chaperone HscB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-11   43.6   1.4    6.3e-11   42.6   1.4    1.5  1  HSCB_C         HSCB C-terminal oligomerisation domain
    9.5e-09   35.3   0.1    1.7e-08   34.4   0.1    1.4  1  DnaJ           DnaJ domain
  ------ inclusion threshold ------
      0.023   14.0   0.4      0.031   13.5   0.4    1.2  1  SabA_adhesion  SabA N-terminal extracellular adhesion domain


Domain annotation for each model (and alignments):
>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   1.4     1e-14   6.3e-11       2      76 .]      84     155 ..      83     155 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 1e-14
                 -HHHHHHHHHHHHHHHCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH CS
      HSCB_C   2 dpefLmevMelrEeleeaeeaadkeeleelkaeveerieeleaeleeafekkdleaaadllrrlrYlekikeeik 76 
                 d +fL e+M+lr +l+     +dk  l++++++v +  +e+ +++ + ++++ +++a d++r+l++l k++ +i+
  EGE27394.1  84 DWDFLDEMMDLRIRLDTT---DDKMVLDQISNQVHALSQEQSTRFMQNYQNHTWAEAIDATRKLQFLGKLLVDID 155
                 889***************...599*************************888*****************998885 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.1   2.9e-12   1.7e-08       9      62 ..      15      67 ..       5      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.9e-12
                STTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHH CS
        DnaJ  9 skdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqY 62
                + d +++ +k+a   l +++HPD+   ++ ++++   in+Ay+vLs +++R++Y
  EGE27394.1 15 AFDIDKNALKSALLSLQKQHHPDRD-ANKASTNQASLINHAYQVLSHADSRAAY 67
                45678889*****************.88899999******************99 PP

>> SabA_adhesion  SabA N-terminal extracellular adhesion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   5.2e-06     0.031     118     192 ..      40     131 ..      18     152 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.2e-06
  SabA_adhesion 118 ngklsieeyeklneAYqiiqkAlknqaglpaLndkgeklevnvtkenrrtadinr..................ekftatngkevsvkesngks 192
                      k s+++   +n+AYq++++A  + a l +L+++   l++ ++   +   ++ +                  +++ a + ++ +  ++n+++
     EGE27394.1  40 ANKASTNQASLINHAYQVLSHADSRAAYLLELSGQAVDLSQSIND-WDFLDEMMDlrirldttddkmvldqisNQVHALSQEQSTRFMQNYQN 131
                    3458999***************999*********99999988887.33333333334445555555555554444444444444444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1338.85
//
Query:       EGE27395.1  [L=106]
Description: iron-sulfur cluster assembly protein IscA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-24   84.5   0.0    6.1e-24   84.3   0.0    1.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   3.4e-28   6.1e-24       3     111 .]       2     102 ..       1     102 [. 0.98

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 3.4e-28
                  EEE-HHHHHHHHHHHHCTTEC..EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke..lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLks 98 
                  i+lt +Aa+++k++l++++    +r++v++ g       Cs g  y l++vd + ++ de +es+g++v+++++slv+l +gl++d+v++  ++g+k+
   EGE27395.1   2 INLTTQAAQHIKDFLENRGSGvgIRVGVRTAG-------CS-GLAYVLEFVDDP-NNSDERFESHGVSVFIDPKSLVYL-NGLQMDYVTEGLNSGFKF 89 
                  9****************998899*********.......**.************.************************.****************** PP

                  ETCCEEEEEEEEE CS
  Fe-S_biosyn  99 dngilddnvglgk 111
                  +n++ ++++g+g+
   EGE27395.1  90 TNPNQTGECGCGE 102
                  ***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 823.25
//
Query:       EGE27396.1  [L=127]
Description: scaffold protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-56  189.6   0.5    2.2e-56  189.5   0.5    1.0  1  NifU_N    NifU-like N terminal domain


Domain annotation for each model (and alignments):
>> NifU_N  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.5   0.5   1.2e-60   2.2e-56       1     126 [.       2     125 ..       2     127 .] 0.98

  Alignments for each domain:
  == domain 1  score: 189.5 bits;  conditional E-value: 1.2e-60
                 CSCHHHHHHHHSSSSBSS-TTSSS--EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHCCCCHHHHHHHHTC CS
      NifU_N   1 aysdkvldhyknPrnvGvleeedakvgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAssslltelvkgktleealkitnkeiaeelgg 99 
                 aysdkv+dhy+nPrnvG l+++ ++vg+g+vgapacGD++rLqi+v+++ ++iedakFkt+GCgsaiAsssl+te++kgktl++a++i+nk+ia+el+ 
  EGE27396.1   2 AYSDKVIDHYENPRNVGNLDKAAKNVGTGMVGAPACGDVMRLQIQVSDD-GIIEDAKFKTYGCGSAIASSSLVTEWLKGKTLDQAAAIKNKDIANELA- 98 
                 69**********************************************7.************************************************. PP

                 SCSSSCHCSCHHHHHHHHHHHHHHHHC CS
      NifU_N 100 lpkeklhcsvlaedalkaavkkYkakk 126
                 lp++k+hcsvlaeda+kaa+++Y++k 
  EGE27396.1  99 LPPVKVHCSVLAEDAIKAAIEDYQTKA 125
                 ************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1013.49
//
Query:       EGE27397.1  [L=407]
Description: cysteine desulfurase IscS [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-84  281.8   0.1    8.6e-84  281.6   0.1    1.0  1  Aminotran_5      Aminotransferase class-V
    1.6e-06   27.7   0.1    2.5e-06   27.1   0.1    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    9.4e-05   21.8   0.2    0.00014   21.3   0.2    1.1  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00014   20.6   0.0    0.00022   19.9   0.0    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.6   0.1   1.9e-87   8.6e-84       1     370 [.       7     371 ..       7     372 .. 0.96

  Alignments for each domain:
  == domain 1  score: 281.6 bits;  conditional E-value: 1.9e-87
                  EEEBTTTS----HHHHHHHHHHHH..CTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEET CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyyt..dynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars.lkpgdeivvte 95 
                  iyld+aAtt++ +eV d++ +y+t     +n+ +  h +g++a +ave+ar ++ae ++a+   ei+ftsG+te+ nl+++++a+    +g++i++++
   EGE27397.1   7 IYLDYAATTPVAKEVADKMVNYLTfeGIFGNPASRSHGFGWQAEEAVENARLQIAETVGADP-REIVFTSGATESDNLAIKGVAHFyEGRGRHIITSK 103
                  8*********************7533789********************************7.********************999999********* PP

                  TSHGGGTHHHHHHHHHHTEEEEEEEBET.TSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTE CS
  Aminotran_5  96 aehhanlvpwqelakrtgakvkviplde.egeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgv 192
                  +eh+a l ++++l+ ++g+++++++ ++ +g++ ++++e++l+++t lv++++v+n++Gti ++++ig++ ++kg+l++vDaaqavg+i+i++ +l+v
   EGE27397.1 104 IEHKAVLDTCRQLE-QEGFEITYLEPEAgTGLIYPEQVENALRDDTILVSLMAVNNELGTITDIAAIGEITRAKGVLFHVDAAQAVGKIKINLGELKV 200
                  *************8.88*******8876269999**************************************************************** PP

                  SEEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_5 193 DflafsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyller 290
                  D+++fsghK++gP+GiG+lyv ++  ++++  + gg+       +e++       +++GT  + +i+g+g+a+ +   + +++ ++h k+l+++l  +
   EGE27397.1 201 DLMSFSGHKIYGPKGIGALYVGRKPRVRIKAEQHGGG-------HERG-------MRSGTLATHQIVGMGEAFALS-VQRFDEDHTHIKALRDKLWHG 283
                  ************************************9.......9999.......899***************987.999****************** PP

                  HCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S.......-EEEEE--TTS-HHHHHH CS
  Aminotran_5 291 lkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca....qplmkrlale.......gtvRaSlyiynteeevdr 370
                  l+++++v+l+g + ++  ++i++++f+ v+ e +++ L++   av+sG++c+    +p+++++a+        +++R+S+++y+te+++d 
   EGE27397.1 284 LQDIEEVYLNG-SMEHGVPNIINVSFNFVEGESLMMSLKD--LAVSSGSACTsatlEPSYVLRAIGrpdelahSSIRFSIGRYTTEQDIDL 371
                  *********99.799***********************98..**********999999999999999**********************96 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   5.6e-10   2.5e-06      40     153 ..      70     192 ..      45     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 5.6e-10
                      EEEEESSHHHHHHHHHHH...TTTTTT-EEEEESSS-THHHHHHHHT...T-EEEEE-B-TTTSSB-GGGCGGG--TTE..EEEEEB-.GGGB- CS
  DegT_DnrJ_EryC1  40 haiavssGtaAlhlaLra...lgvgpgdeVIvpsltFvatanavlel...gakpvfvDvdpdtynidpaaieaaitert..kaIlpVh.lyGqv 124
                        + +s +t++  la++    +  g+g+ +I+ ++   a   + ++l   g +  +++ ++ t  i p+++e+a+   t     ++V+  +G +
       EGE27397.1  70 EIVFTSGATESDNLAIKGvahFYEGRGRHIITSKIEHKAVLDTCRQLeqeGFEITYLEPEAGTGLIYPEQVENALRDDTilVSLMAVNnELGTI 163
                      4555666788888888765567788************997777665533388999************************886667775269*** PP

                      --HHHHHHHHHHCT-EEEEE-TT-TT-EE CS
  DegT_DnrJ_EryC1 125 admdalkaiaakhglkvieDaAhAlGaty 153
                       d++a+ +i +++g+ +  DaA+A+G   
       EGE27397.1 164 TDIAAIGEITRAKGVLFHVDAAQAVGKIK 192
                      **************************654 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2     3e-08   0.00014      39     267 ..      58     277 ..      47     298 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3e-08
                      HHHHHHTT-S..EEEEES-HHHHHHHHH..HHH-..-TTEEEEEETT-H.HHHSSTTHHHHCC--EEEEE-EBTT.TBE-HHHHHHHS--S-TT CS
  Beta_elim_lyase  39 davaelfgke..aalfvpqGtaAnsill..kill..qrgeevivtepah.ihfdetgaiaelagvklrdlknkea.Gkmdlekleaaikevgah 124
                       ++ae +g++   ++f+   t ++++++   ++    rg  +i ++  h    d+++++++ +g + + l+ ++  G + +e++e+a++++   
       EGE27397.1  58 LQIAETVGADprEIVFTSGATESDNLAIkgVAHFyeGRGRHIITSKIEHkAVLDTCRQLEQ-EGFEITYLEPEAGtGLIYPEQVENALRDD--- 147
                      5667777776546788888899999999553333345777777766655267899999966.6777777776665699************3... PP

                      S-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT-.-SS-EEEEE-HH.... CS
  Beta_elim_lyase 125 eekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdll.anvGgvlafrddeled 217
                         + l+sl   nn       ++  ++++ +i++++g+ +h+D+A    a+ +++  + e+   vD +++s+ K  +   +G++ ++r+     
       EGE27397.1 148 ---TILVSLMAVNNE----LGTITDIAAIGEITRAKGVLFHVDAA---QAVGKIKINLGEL--KVDLMSFSGHKIYGpKGIGALYVGRKP---- 225
                      ...458888777774....4466788899999***********98...5777788888887..69******9997552689999999999.... PP

                      HHHHHHHHHHHHT---S..STHHHHH..HHHHHHHHS....STTHHHHHHHHHHHH CS
  Beta_elim_lyase 218 ylaerveqrkylggglr..qagvlaaleagiraleeg....laslerdhktaeqla 267
                        + r++  +  gg+ r   +g la     i+ + e     ++++++dh + + l 
       EGE27397.1 226 --RVRIKAEQHGGGHERgmRSGTLAT--HQIVGMGEAfalsVQRFDEDHTHIKALR 277
                      ..566666555555433222555555..3333333333333666666666655555 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.9e-08   0.00022      71     197 ..      71     208 ..      49     215 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.9e-08
                      EEESSHHHHHHHH....HHTTS-T.TEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST......TSHHHHHHHCCTTEEEEEEESS-TTTT-- CS
  Cys_Met_Meta_PP  71 lavssGmaAiaaa....ilallka.GdeivvsddlYggtqrllkkvlkklgievkfvdt......sdleelekaikentklvylEtptnpllkv 153
                      ++++sG + +++     + ++ +  G +i++s+  ++   + ++++ ++ g e+++ ++        +e++e+a+++ t lv l ++ n l  +
       EGE27397.1  71 IVFTSGATESDNLaikgVAHFYEGrGRHIITSKIEHKAVLDTCRQL-EQEGFEITYLEPeagtglIYPEQVENALRDDTILVSLMAVNNELGTI 163
                      5566666544433111134444434899999988888888888775.5556777777764444445689************************* PP

                      --HHHHHHHHHHTT-EEEEEGTTTHT.TTS-GGGGT-SEEEEETT CS
  Cys_Met_Meta_PP 154 vDiekiaklakkagvlvvvDntfasp.llqrplklgaDivvhSaT 197
                      +Di++i ++++++gvl  vD++ a + + ++  +l +D+   S+ 
       EGE27397.1 164 TDIAAIGEITRAKGVLFHVDAAQAVGkIKINLGELKVDLMSFSGH 208
                      *********************999884445555777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 3361.04
//
Query:       EGE27398.1  [L=168]
Description: BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-26   91.4   1.1    4.5e-26   91.0   0.3    1.6  2  Rrf2            Transcriptional regulator
     0.0019   18.1   0.1     0.0046   16.9   0.1    1.6  1  MarR            MarR family
     0.0066   16.3   0.1      0.015   15.2   0.1    1.6  1  MarR_2          MarR family
  ------ inclusion threshold ------
      0.018   14.7   0.0      0.031   13.9   0.0    1.4  1  HrcA_DNA-bdg    Winged helix-turn-helix transcription repress
      0.024   14.7   1.9      0.031   14.3   0.0    2.1  2  FeoC            FeoC like transcriptional regulator
      0.029   14.4   0.1      0.067   13.2   0.1    1.6  1  HTH_46          Winged helix-turn-helix DNA binding
      0.037   14.2   0.3       0.53   10.5   0.1    2.2  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.049   13.6   0.3       0.15   12.1   0.1    1.8  2  HTH_Crp_2       Crp-like helix-turn-helix domain
       0.12   11.9   0.3       0.25   10.9   0.1    1.7  2  HTH_24          Winged helix-turn-helix DNA-binding
       0.19   11.8   0.6        0.5   10.5   0.1    2.0  3  HTH_20          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.3   2.5e-29   4.5e-26       1      83 []       1      85 [.       1      85 [. 0.97
   2 ?   -2.0   0.0       2.7   4.9e+03      28      33 ..     128     133 ..     116     150 .. 0.56

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 2.5e-29
                X---HHHHHHHHHHHHHHHSSTCC-..B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHHH CS
        Rrf2  1 MklsskteyalhallyLakeeeeep..vsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvrav 83
                M+l+++++ya++all+La +e++++  vs+++ia+rq+is syle++++kLrk+glv+s+rG+ GGy Lakp+e+I +  +++av
  EGE27398.1  1 MRLTTRGRYAVTALLDLAVQESRHQgaVSLSDIAKRQSISISYLEQLFSKLRKKGLVNSTRGALGGYHLAKPLEDIDIMSIITAV 85
                9*****************999887777*******************************************************997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.7
                 HHHHHH CS
        Rrf2  28 seeiae 33 
                 ++++ e
  EGE27398.1 128 LAQLLE 133
                 333322 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.6e-06    0.0046      14      51 ..      24      61 ..      21      63 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.6e-06
                HSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 14 eqgplsvseLakklgvskstvtrvldrLekkGlieRsk 51
                +qg+ s+s++ak+ ++s+s++  +  +L kkGl+++++
  EGE27398.1 24 HQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVNSTR 61
                799*******************************9987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   8.4e-06     0.015      17      56 ..      24      62 ..      10      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.4e-06
                TTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 17 rpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                + g  ++ +++a+r  +s s++ ++  +L ++GLv  ++g
  EGE27398.1 24 HQG-AVSLSDIAKRQSISISYLEQLFSKLRKKGLVNSTRG 62
                444.48*****************************87765 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.7e-05     0.031       8      64 ..       9      68 ..       2      80 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
  HrcA_DNA-bdg  8 eilqaLielyrkk...kravKgeeiAevlkrneGtvRNqlqsLkalgLvegvpGPkGGYk 64
                    ++aL++l  ++   + av   +iA+  +    ++   ++ L+  gLv++  G  GGY+
    EGE27398.1  9 YAVTALLDLAVQEsrhQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVNSTRGALGGYH 68
                  55666666654432227799999************************************7 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.7e-05     0.031      10      47 ..      23      60 ..      15      65 .. 0.90
   2 ?   -2.4   0.5       2.8     5e+03      51      58 ..      93     101 ..      85     107 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
        FeoC 10 eergrvslkeLsrhfkaspealeamLeqwvrkGrvekv 47
                + +g vsl++++++ ++s + le++   + +kG v+ +
  EGE27398.1 23 RHQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVNST 60
                57899****************************99865 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.8
        FeoC  51 acc.sgsCk 58 
                  c  +g C+
  EGE27398.1  93 QCGgKGNCQ 101
                 222255554 PP

>> HTH_46  Winged helix-turn-helix DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.7e-05     0.067      26      60 ..      30      64 ..       9      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-05
      HTH_46 26 lkyIqkrtnLSrSsimkvLseLkkggyIeierGkL 60
                l+ I kr  +S S+  + +s+L+k g ++  rG L
  EGE27398.1 30 LSDIAKRQSISISYLEQLFSKLRKKGLVNSTRGAL 64
                45599****************************98 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0003      0.53      19      53 ..      24      58 ..      17      62 .. 0.90
   2 ?    1.7   0.0      0.16     3e+02       2      13 ..     115     126 ..     114     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
                    HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGyve 53
                     ++ v+ +d+a+r  +s s   +  +kL+k+G+v+
      EGE27398.1 24 HQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVN 58
                    6899*****************************97 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.16
                     --HHHHHHHHHH CS
  Fe_dep_repress   2 LvestEdYLetI 13 
                     L+  +E YL+ +
      EGE27398.1 115 LSHHIESYLKKV 126
                     88999****987 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   8.3e-05      0.15       6      54 ..      13      61 ..      11      69 .. 0.79
   2 ?   -1.5   0.0       1.4   2.6e+03      25      34 ..     126     135 ..     111     150 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.3e-05
                HHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2  6 fLlrlaeraggeielpltqeelAsmlGltretvsrilseLkreglis.rg 54
                 Ll+la +++ + +  ++  ++A +  ++ + + +++s+L+++gl+  ++
  EGE27398.1 13 ALLDLAVQES-RHQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVNsTR 61
                5778855422.233568999**************************9644 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.4
                 HHHHHHTTSS CS
   HTH_Crp_2  25 eelAsmlGlt 34 
                   lA++l + 
  EGE27398.1 126 VTLAQLLETK 135
                 3444444332 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00014      0.25      18      47 ..      28      57 ..      18      58 .. 0.91
   2 ?   -3.1   0.0       3.3     6e+03       5      14 ..      75      84 ..      75      91 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGlI 47
                 s +++A+r  +S+s + +   +L ++Gl+
  EGE27398.1 28 VSLSDIAKRQSISISYLEQLFSKLRKKGLV 57
                7999************************98 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.3
      HTH_24  5 drkILelLqk 14
                d++I++++ +
  EGE27398.1 75 DIDIMSIITA 84
                7889999876 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00028       0.5      12      58 ..       8      61 ..       3      63 .. 0.91
   2 ?   -3.7   0.0       7.4   1.3e+04      43      51 ..      67      76 ..      67      79 .. 0.69
   3 ?   -1.7   0.0       1.8   3.2e+03      41      46 ..     115     120 ..     113     142 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00028
                HHHHHHHH.......STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 12 RrrilraL.......araegltaselaerldlskntlsyHLrvLeeagLvevvr 58
                R+++ ++L       +  +++++s++a+r ++s + l + + +L++ gLv ++r
  EGE27398.1  8 RYAVTALLdlavqesRHQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVNSTR 61
                7788888888999999999*******************************9998 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.4
                HHH.HHHHHC CS
      HTH_20 43 yHL.rvLeea 51
                yHL + Le+ 
  EGE27398.1 67 YHLaKPLEDI 76
                7886777765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.8
                 HHHHHH CS
      HTH_20  41 lsyHLr 46 
                 ls+H++
  EGE27398.1 115 LSHHIE 120
                 555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1057  (0.0589548); expected 358.6 (0.02)
Passed bias filter:                      718  (0.0400469); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1290.63
//
Query:       EGE27399.1  [L=225]
Description: hypothetical protein EA1_03033 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.04   14.3   1.3      0.067   13.6   1.3    1.4  1  DUF5383        Family of unknown function (DUF5383)
      0.053   13.3   3.0        0.1   12.4   3.0    1.5  1  Synaptobrevin  Synaptobrevin
       0.07   12.7   0.0       0.12   12.0   0.0    1.4  1  SUR7           SUR7/PalI family


Domain annotation for each model (and alignments):
>> DUF5383  Family of unknown function (DUF5383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.3   1.1e-05     0.067      64     118 ..     172     225 .]     153     225 .] 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
     DUF5383  64 tiaakakelgLfseekesvkqsateqeseeksnlLpillillivllivvllivli 118
                  i+ +a++++  s e++    +  eq+s++k++++  + i++iv+++++++ ++i
  EGE27399.1 172 KINEQAERIDTLSMENKRLAIQLAEQKSKNKTTFIV-MVIAIIVAVVSIIMHFVI 225
                 688999***999999999999999999966666665.557888999999999987 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   3.0   1.7e-05       0.1      36      87 ..     173     224 ..     160     225 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
                    HCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin  36 LvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiiivi 87 
                    +++++e++ + + + k+ a +l+++   ++  +i+++i+++++++ ii+ ++
     EGE27399.1 173 INEQAERIDTLSMENKRLAIQLAEQKSKNKTTFIVMVIAIIVAVVSIIMHFV 224
                    6788888888899999999*******99*******************99876 PP

>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     2e-05      0.12      85     135 ..     167     224 ..     146     225 .] 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2e-05
        SUR7  85 eelnsesngkvd...........lPsnlrktlsklnnltkalfilhiialvlsfislvvgll 135
                  +++ ++n++             l  +l +     ++  k  fi+++ia++  ++s+++ ++
  EGE27399.1 167 ANYQLKINEQAEridtlsmenkrLAIQLAE----QKSKNKTTFIVMVIAIIVAVVSIIMHFV 224
                 444445544444555666644443334444....44447889****************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1622  (0.090468); expected 358.6 (0.02)
Passed bias filter:                      802  (0.044732); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1712.26
//
Query:       EGE27400.1  [L=90]
Description: DNA-binding protein HU-beta [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-36  124.4   0.3    1.7e-36  124.2   0.3    1.0  1  Bac_DNA_binding  Bacterial DNA-binding protein
    1.4e-07   31.6   0.1    1.5e-07   31.5   0.1    1.0  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
    3.3e-07   30.1   0.0    4.9e-07   29.5   0.0    1.2  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
    5.3e-06   26.5   0.0    6.6e-06   26.2   0.0    1.2  1  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
     0.0038   17.3   0.0     0.0041   17.2   0.0    1.1  1  HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
  ------ inclusion threshold ------
      0.013   15.6   0.1      0.015   15.4   0.1    1.0  1  Integrase_1      Integrase
      0.017   15.3   0.1      0.066   13.4   0.1    1.7  2  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
      0.063   13.3   0.0       0.12   12.4   0.0    1.5  2  HU-DNA_bdg       DNA-binding domain
      0.078   13.6   0.1      0.078   13.6   0.1    1.2  1  DUF937           Bacterial protein of unknown function (DUF93
       0.14   12.0   0.0        0.2   11.6   0.0    1.2  1  HU-CCDC81_bac_1  CCDC81-like prokaryotic HU domain 1


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.3   9.7e-40   1.7e-36       1      90 []       1      90 []       1      90 [] 0.99

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 9.7e-40
                     EEHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH. CS
  Bac_DNA_binding  1 mtkkeLieeiaektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeavn 90
                     m+k+eL+++ia+++gltk++a+++v+af+++++ aL++g++v l gFGtf+vker+ar grnpkTge+++i+a+kv++Fk++k lke vn
       EGE27400.1  1 MNKSELVDSIAQSAGLTKEQAAKAVNAFTESVQGALQRGDDVVLVGFGTFSVKERAARMGRNPKTGEAIQIAASKVPSFKAGKVLKESVN 90
                     9**************************************************************************************997 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   8.4e-11   1.5e-07      33     118 ..       2      89 ..       1      90 [] 0.93

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 8.4e-11
      HU-HIG  33 dfeeLceeiskrstlsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkki.nfrpgkklkkel 118
                 + +eL++ i+++ +l++ + + ++ a+++ ++ aL++G  V L ++G+Fs++ ++ +   ++k+ +a +i   k+  f++gk lk+ +
  EGE27400.1   2 NKSELVDSIAQSAGLTKEQAAKAVNAFTESVQGALQRGDDVVLVGFGTFSVKERAaRMGRNPKTGEAIQIAASKVpSFKAGKVLKESV 89 
                 6789***************************************************8888889999*********97799999999876 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.7e-10   4.9e-07       3      51 ..       6      54 ..       5      57 .. 0.96

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.7e-10
  HU-CCDC81_bac_2  3 LansiaeaegisyeeAlqkiekeveelkqeLeeegrveleniGeLslne 51
                     L++sia+  g++ e+A ++++ ++e+++ +L+++  v l + G++s++e
       EGE27400.1  6 LVDSIAQSAGLTKEQAAKAVNAFTESVQGALQRGDDVVLVGFGTFSVKE 54
                     89********************************************987 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.7e-09   6.6e-06      10      61 ..      10      59 ..       7      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.7e-09
  HU-CCDC81_euk_2 10 laaaaglsrdvVescvqetfqalgdllrngknvelefkgiGvLsirnrkvkm 61
                     +a+ agl+++++  +v++++  ++ +l++g +v l+  g+G++s++ r+++m
       EGE27400.1 10 IAQSAGLTKEQAAKAVNAFTESVQGALQRGDDVVLV--GFGTFSVKERAARM 59
                     9********************************999..69**********99 PP

>> HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.3e-06    0.0041      19      66 ..      16      63 ..       5      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.3e-06
  HU-CCDC81_euk_1 19 ltteqllliWdalgeyieeqlekgkgvhipnfGtFtfeapdldlkadk 66
                     lt+eq  ++ +a+ e ++  l++g  v + +fGtF+++ +   ++ + 
       EGE27400.1 16 LTKEQAAKAVNAFTESVQGALQRGDDVVLVGFGTFSVKERAARMGRNP 63
                     799***********************************7777776654 PP

>> Integrase_1  Integrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1   8.2e-06     0.015      39     112 ..      10      85 ..       3      89 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.2e-06
  Integrase_1  39 LarvlGLRseEAvqlaksl.ktWkkaLergeerlrvvfGTKGgrpRevtilerealksavalai.kvaeernGkLi 112
                  +a++ GL +e A+++++   ++ + aL+rg++ + v fGT   ++R +++    +  +a++ a  kv + + Gk++
   EGE27400.1  10 IAQSAGLTKEQAAKAVNAFtESVQGALQRGDDVVLVGFGTFSVKERAARMGRNPKTGEAIQIAAsKVPSFKAGKVL 85 
                  57788**********8876246789************************999655555555543133455666665 PP

>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.27   4.8e+02      22      42 ..       5      25 ..       2      28 .. 0.80
   2 ?   13.4   0.1   3.7e-05     0.066      50      78 ..      21      48 ..      15      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.27
                   HHHHHHHHHHT--GGGB--TH CS
  ACP_syn_III_C 22 riidavakklglpeekvvvnl 42
                   +++d++a+  gl++e++++ +
     EGE27400.1  5 ELVDSIAQSAGLTKEQAAKAV 25
                   578999999999999987765 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.7e-05
                   GGHHHHHHHHHHHTTSS-TT-EEEEEEEE CS
  ACP_syn_III_C 50 aasiplaLdeaveegklkpgdlvllvgfG 78
                   aa  + a+ e v+ g l++gd v+lvgfG
     EGE27400.1 21 AAKAVNAFTESVQ-GALQRGDDVVLVGFG 48
                   7888889999999.**************9 PP

>> HU-DNA_bdg  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.6e-05      0.12      32      80 ..       4      52 ..       1      64 [. 0.84
   2 ?   -1.7   0.0       1.6   2.8e+03     102     114 ..      77      89 ..      68      90 .] 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.6e-05
                HHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTTT-EEE.-SSEEEEE CS
  HU-DNA_bdg 32 edIidemvkegtevrketienilnlykrevseaileGysVn.tglgrasl 80
                ++++d +++  ++++ke +++++n +++ v  a++ G  V+  g+g+ s+
  EGE27400.1  4 SELVDSIAQ-SAGLTKEQAAKAVNAFTESVQGALQRGDDVVlVGFGTFSV 52
                677777765.689************************9876368887776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.6
                 EEEEE-HHHHHHH CS
  HU-DNA_bdg 102 vsltqgkeLreal 114
                 +s+++gk L+e +
  EGE27400.1  77 PSFKAGKVLKESV 89 
                 6899999999876 PP

>> DUF937  Bacterial protein of unknown function (DUF937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   4.4e-05     0.078       9      45 ..       4      40 ..       1      82 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
      DUF937  9 gapiqqlaqqlGedeaqaesalsaalpallgalaqna 45
                ++ ++ +aq++G  ++qa++a+ a++ ++ gal++  
  EGE27400.1  4 SELVDSIAQSAGLTKEQAAKAVNAFTESVQGALQRGD 40
                577999***************************9975 PP

>> HU-CCDC81_bac_1  CCDC81-like prokaryotic HU domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011       0.2       5      36 ..      29      60 ..      25      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
  HU-CCDC81_bac_1  5 erhIekLLlehdcVivPglGGFvahyvpAryd 36
                     ++ ++  L + d V++ g+G+F ++++ Ar+ 
       EGE27400.1 29 TESVQGALQRGDDVVLVGFGTFSVKERAARMG 60
                     56677889999******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 683.29
//
Query:       EGE27401.1  [L=617]
Description: PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-29  100.3   0.7    9.6e-29  100.3   0.7    2.8  4  SurA_N_3    SurA N-terminal domain
      1e-18   68.1   2.3    2.2e-18   67.0   0.0    2.5  3  Rotamase    PPIC-type PPIASE domain
    8.6e-18   65.3  12.0    3.2e-12   47.3   0.0    4.4  4  Rotamase_2  PPIC-type PPIASE domain
    2.6e-17   63.0   1.9    2.6e-17   63.0   0.2    1.9  2  SurA_N_2    SurA N-terminal domain
    2.4e-15   57.1   0.3    6.4e-15   55.7   0.0    1.9  2  Rotamase_3  PPIC-type PPIASE domain
     0.0015   18.6   2.8          3    7.9   0.0    4.0  5  DUF3071     Protein of unknown function (DUF3071)
  ------ inclusion threshold ------
      0.023   14.8   4.8      0.024   14.7   1.1    2.5  2  SurA_N      SurA N-terminal domain
      0.054   13.3   0.1          1    9.2   0.0    2.6  2  IF2_N       Translation initiation factor IF-2, N-terminal re


Domain annotation for each model (and alignments):
>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.7   4.3e-32   9.6e-29       2     161 ..       1     159 [.       1     160 [. 0.95
   2 ?   -3.2   0.1       2.9   6.4e+03      44      64 ..     198     218 ..     197     224 .. 0.78
   3 ?   -0.4   0.0      0.39   8.6e+02     131     145 ..     248     262 ..     243     269 .. 0.86
   4 ?   -2.4   0.1       1.6   3.6e+03      92     101 ..     480     489 ..     467     511 .. 0.48

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 4.3e-32
    SurA_N_3   2 leflrknakswiakillgliilaFvlwGvgsylsgsg..nsvakVngekIsraefqqayrrqleqlrqqlggnldaelldelglrqqvldqlidealll 98 
                 +e++r+  ksw   ++l+  +++++++Gvg++++     n+ +kV+++ +  a fq +++ +++ l +q    +da+l++e +l+q +l++l d+all+
  EGE27401.1   1 MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIqpNELIKVGNQVVDVATFQAEVNAERNALIEQ---GVDASLINEHALQQLILKRLTDKALLE 96 
                 799****************************8887666677**********************998875...6************************** PP

    SurA_N_3  99 qeakklglsvsdeevakeiasipaFqedGkFdkerYkqlLaangltpeefeaslredlllqkl 161
                 ++a+ lg++vsde + + ++ ++ F+++G+F+++r+ ++L++nglt++ + a  r  l l++l
  EGE27401.1  97 NQASYLGMTVSDEMITQILQHYEVFHDNGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQL 159
                 ************************************************999999988888887 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.9
    SurA_N_3  44 VngekIsraefqqayrrqleq 64 
                 V++ +Is a++q  +++ +++
  EGE27401.1 198 VDQVQISDAQIQAYFDEHQDK 218
                 788888888888888887765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.39
    SurA_N_3 131 kerYkqlLaangltp 145
                 +++Y ++L++ng+t+
  EGE27401.1 248 NAQYANYLRENGITD 262
                 578**********97 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.6
    SurA_N_3  92 idealllqea 101
                 i+++l +q+a
  EGE27401.1 480 IKQTLAKQKA 489
                 2222222222 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   9.8e-22   2.2e-18      17      96 ..     275     355 ..     268     356 .. 0.95
   2 ?   -3.3   0.1         8   1.8e+04      18      39 ..     367     387 ..     360     397 .. 0.62
   3 ?   -0.8   0.1       1.4   3.1e+03      17      44 ..     475     501 ..     466     530 .. 0.65

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 9.8e-22
                 HHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETT...TS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEEE CS
    Rotamase  17 eakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekg...qlppefekaafslkkGeisepvetkfGfhiikle 96 
                 +a+++a +i+++l++ge+ Fe+lA+ +S d++s +ngG +g +++    ++++ +e+a+++l+ G+is+pv+t fG+hi+k++
  EGE27401.1 275 DAQNRAAKIQSKLNAGES-FEALAKAHS-DDPSGSNGGVIGSFNPSvfgEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355
                 89**************99.*********.9999*********9998888********************************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8
                 HHHHHHHHHCCTCCCHHHHHHH CS
    Rotamase  18 akakaeeileqlksgedtFeel 39 
                 +++++++ +++lk +++ F++l
  EGE27401.1 367 MRDQLMDRAAKLKRDQA-FADL 387
                 45555555666666655.6655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.4
                 HHHHHHHHHHCCTCCCHHHHHHHHCCC- CS
    Rotamase  17 eakakaeeileqlksgedtFeelArkyS 44 
                 eaka++++ l++ k+ e ++++ A+k++
  EGE27401.1 475 EAKAQIKQTLAKQKAIELAMAD-AKKVA 501
                 5666666666666665553332.44444 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00011      0.25       1      33 [.     203     235 ..     203     237 .. 0.92
   2 !   47.3   0.0   1.4e-15   3.2e-12       1     113 [.     242     361 ..     242     369 .. 0.81
   3 !    9.0   1.6    0.0011       2.4      48     120 ..     398     477 ..     368     478 .. 0.68
   4 ?    2.6   2.2      0.11   2.4e+02      32      66 ..     474     508 ..     474     560 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
  Rotamase_2   1 vteaevkayYeankdefskpegktlelavvkdq 33 
                 +++a+++ay+++++d++ kp+++ l++++ ++ 
  EGE27401.1 203 ISDAQIQAYFDEHQDKLIKPATVDLSYIELDPN 235
                 79************************9998875 PP

  == domain 2  score: 47.3 bits;  conditional E-value: 1.4e-15
  Rotamase_2   1 vteaevkayYeankdefskpegktle.lavvkdqvaaeaalalakagaekdfaalakgnskkaadlg...ifesa....snlpeelakaafalkpgevs 91 
                 +te+e+ a Y  +  e +  +g+ l+ ++ + + +++ aa+ + k +a+++f+alak+ s++++  +   i +++     + ++ +++a++ l++g++s
  EGE27401.1 242 PTEQEINAQYANYLRENGITDGRELAqILLTGPDAQNRAAKIQSKLNAGESFEALAKAHSDDPSGSNggvIGSFNpsvfGEYAAGVEQALSGLSVGQIS 340
                 89****************99997666255555777788888888888889**********998887777744444545655667*************** PP

  Rotamase_2  92 gpvetdngyyivkvtevkpakv 113
                  pv+t++gy+i+kvt+    ++
  EGE27401.1 341 QPVQTGFGYHIFKVTKASN-DT 361
                 ***************9764.44 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0011
  Rotamase_2  48 ekdfaalakgnskkaadlgifesa...snlpe.elakaaf...alkpgevsgpvetdngyyivkvtevkpakvppfeevk 120
                 +  +a++ak+++ ++++  ++ ++   + lp+ ++++aaf   + ++ +vs+ +  +++ + v+ t+ + +++++f+e+k
  EGE27401.1 398 GMGVADIAKEAGVQVKQIIAYPQTnntTALPQpAVIAAAFddfTIQDQGVSPNISLGEKNVWVQPTNYEAERPLTFDEAK 477
                 3446777777777755544333333335555568999997666899*********************************9 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.11
  Rotamase_2  32 dqvaaeaalalakag....aekdfaalakgnskkaadlg 66 
                 d+++a+ ++ lak++    a +d++++a+++    ++ g
  EGE27401.1 474 DEAKAQIKQTLAKQKaielAMADAKKVADEA----KNSG 508
                 5778888888888884444444444444444....3333 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.2   1.2e-20   2.6e-17       1     145 []       1     136 [.       1     136 [. 0.91
   2 ?   -2.8   0.1       2.4   5.3e+03      58      89 ..     475     504 ..     472     512 .. 0.53

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 1.2e-20
    SurA_N_2   1 LekiReksqgllvii.iglallaFilgdlfgvgsylfss.ssnevaeVnGekIslqefqqaveearqqlqqqlgenfdeseedeaqlreqvldqlvsek 97 
                 +e++R+  +++   + ++  l++++   ++gvg + +++ + ne ++V+++ ++++ fq++v+ +r+ l +q    +d s  +e  l++ +l++l +++
  EGE27401.1   1 MENMRNFLKSWPGRLvLVGTLIPMA---FLGVGTFGGHAiQPNELIKVGNQVVDVATFQAEVNAERNALIEQ---GVDASLINEHALQQLILKRLTDKA 93 
                 6788888888887776777888899...99***9988889***************************99887...566777999*************** PP

    SurA_N_2  98 lleqeaeklGltvsdeelqdaiqgnpaikqsFqpetGkFdkeklkqfl 145
                 lle++a  lG+tvsde + +++q  +     F   +G+F+++++ ++l
  EGE27401.1  94 LLENQASYLGMTVSDEMITQILQHYEV----FH-DNGQFSNDRFAAYL 136
                 ***************************....**.*********99886 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.4
    SurA_N_2  58 qaveearqqlqqqlgenfdeseedeaqlreqv 89 
                 +a  + +q+l++q  + ++ +++d +++ +++
  EGE27401.1 475 EAKAQIKQTLAKQ--KAIELAMADAKKVADEA 504
                 4444444444444..55566666666666655 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   2.8e-18   6.4e-15      34     114 ..     274     356 ..     249     358 .. 0.85
   2 ?   -3.9   0.0         8   1.8e+04      45      58 ..     376     389 ..     368     393 .. 0.76

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.8e-18
  Rotamase_3  34 eeakakadsllaalkegadFaalAkeySdDpaskenGGelgwft...kgqmvkeFedavfslkkgeiskvvktdfGyHiikvtd 114
                  +a+++a ++ ++l++g++F+alAk  SdDp+ ++nGG +g f+    g+     e+a+  l++g+is++v+t fGyHi kvt+
  EGE27401.1 274 PDAQNRAAKIQSKLNAGESFEALAKAHSDDPS-GSNGGVIGSFNpsvFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVTK 356
                 468999*************************7.***********77667999999**************************986 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 8
  Rotamase_3  45 aalkegadFaalAk 58 
                 a+lk+ + Fa+l +
  EGE27401.1 376 AKLKRDQAFADLSA 389
                 67889999998865 PP

>> DUF3071  Protein of unknown function (DUF3071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0013         3      76     129 ..      45      98 ..      40     105 .. 0.85
   2 ?   -3.1   0.0       3.3   7.3e+03     117     142 ..     174     199 ..     169     216 .. 0.77
   3 ?    3.8   0.0     0.025        55      51      77 ..     275     301 ..     224     345 .. 0.75
   4 ?    4.1   0.0      0.02        44      59      86 ..     391     418 ..     354     421 .. 0.80
   5 ?   -1.6   0.0       1.1   2.5e+03      11      38 ..     554     583 ..     548     603 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
     DUF3071  76 agvsververyahPvlaERariaelarkahvvredgpakltLgevlaealaarg 129
                 +g +v  v ++++ v aER+ ++e+  +a++ +e+  ++l L+ + ++al +++
  EGE27401.1  45 VGNQVVDVATFQAEVNAERNALIEQGVDASLINEHALQQLILKRLTDKALLENQ 98 
                 6788999************************98888888888887777776655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.3
     DUF3071 117 LgevlaealaargvdleeveWdAwre 142
                 ++++++ +l+ar+v +++ +W+ + +
  EGE27401.1 174 VSKLIDLQLEAREVWVHRYHWQDYVD 199
                 56777888888888888888876654 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.025
     DUF3071  51 esslrpreIQariRaGasveevaeeag 77 
                 +++ r  +IQ+++ aG+s e +a++ +
  EGE27401.1 275 DAQNRAAKIQSKLNAGESFEALAKAHS 301
                 55678889***************9864 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.02
     DUF3071  59 IQariRaGasveevaeeagvsververy 86 
                 I ++   G+ v+++a+eagv+v+++  y
  EGE27401.1 391 INTMATDGMGVADIAKEAGVQVKQIIAY 418
                 66677789*****************888 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 1.1
     DUF3071  11 sdgeslvlea..eegeefflavddeLraal 38 
                 ++g+s+++    +++ e +l ++d+Lra +
  EGE27401.1 554 EEGASVIVGGvvNDSSESQLSATDRLRAVA 583
                 46667776664558899999******9653 PP

>> SurA_N  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.1   1.1e-05     0.024      19     100 ..      56     142 ..      43     158 .. 0.77
   2 ?    0.1   0.1      0.37   8.2e+02      30      90 ..     355     415 ..     350     421 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
      SurA_N  19 dervkevkkqlakq..gkqlPpeavLerqvlerlilekiqlqeaektgirvddeelnqaia..eiAkeNk.ltldqlraalaedGls 100
                 + +v++ ++ l +q  +++l +e+ L++ +l rl  + +  ++a+  g++v+de + q ++  e+ ++N+  + d ++a l+++Gl+
  EGE27401.1  56 QAEVNAERNALIEQgvDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQhyEVFHDNGqFSNDRFAAYLQQNGLT 142
                 4455554555544411457789999**********************************98445788886268999*********97 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.37
      SurA_N  30 akqgkqlPpeavLerqvlerlilekiqlqeaektgirvddeeln.qaiaeiAkeNkltldql 90 
                 +k  + +P+ a ++ q+++r    k  ++     + +++  + + + +a+iAke +++++q+
  EGE27401.1 355 TKASNDTPNIASMRDQLMDRAAKLKRDQAF-ADLSAKINTMATDgMGVADIAKEAGVQVKQI 415
                 566778888899999999885433322222.3344445444443267888888888887775 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.18     4e+02      38      52 ..     105     119 ..     102     120 .. 0.90
   2 ?    9.2   0.0   0.00046         1       2      22 ..     397     417 ..     396     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.18
       IF2_N  38 sLDeetaeliaeefg 52 
                 ++++e +++i++++ 
  EGE27401.1 105 TVSDEMITQILQHYE 119
                 89***********96 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00046
       IF2_N   2 skirVyeLAkeLgvkskevik 22 
                 + + V ++Ake gv +k++i+
  EGE27401.1 397 DGMGVADIAKEAGVQVKQIIA 417
                 567799*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4501.55
//
Query:       EGE27402.1  [L=532]
Description: bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.1e-118  394.5   2.2   3.8e-118  394.2   2.2    1.1  1  AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
    3.2e-26   91.3   0.1    1.1e-25   89.6   0.0    1.9  2  MGS              MGS-like domain
  ------ inclusion threshold ------
      0.055   12.7   0.0       0.11   11.7   0.0    1.4  1  Beta-lactamase   Beta-lactamase
       0.15   12.6   0.9        3.7    8.1   0.0    3.3  4  CoA_binding_2    CoA binding domain


Domain annotation for each model (and alignments):
>> AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.2   2.2  8.5e-122  3.8e-118       1     296 []     133     463 ..     133     463 .. 0.94

  Alignments for each domain:
  == domain 1  score: 394.2 bits;  conditional E-value: 8.5e-122
                      HHHTTTT-EEE-SGGGHHHHHHHHHC.T.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH..................CSE...EEEEEEEEES CS
  AICARFT_IMPCHas   1 AAKNhksVtvvvdpadYeevleelkk.gevsletrkklaakaFahtaaYDaaiaeylskq..................lpetlklslekkqkLr 75 
                      AAKNh++V ++++p+dY+++l+elk+ g++s++tr +la+kaF+htaaYD +ia++l ++                  +++t++ +++k+q+Lr
       EGE27402.1 133 AAKNHAHVGIITSPNDYSRILDELKNqGHLSHNTRFDLAVKAFEHTAAYDGMIASWLGARlpvdketapsddatattqFSRTFNHQFTKAQELR 226
                      9*************************99*****************************877888888888888888777778999********** PP

                      SSSSTTS-EEEEE-TT..STTHHH-EEEESS---HHHHHHHHHHHHHHCTS..EEEEEEETTEEEEEEEESS.HHHHHHHHHCCSHHHHTTEEE CS
  AICARFT_IMPCHas  76 YGeNphQkaalyeeee..eeglakaeqlqGkelsynNllDadaalelvkef..aavaivKHanpcGvAvget.laeAyekAlaaDpvSaFGgii 164
                      YGeNphQ+aa+y +++  e+++a+a+qlqGk+lsynN++D+daale+vk+f   a++ivKHanpcGvA++e+ + +Ay+ A+a+Dp SaFGgii
       EGE27402.1 227 YGENPHQSAAFYVDDHatEASVATAQQLQGKALSYNNIADTDAALECVKSFttPACVIVKHANPCGVATSENgILDAYHLAYATDPESAFGGII 320
                      ************988788999******************************752666************99769******************** PP

                      EECCEE-HHHHHHH.TTS-ECEEEECEE-CCHHHCCTTSSS-EEEE-SS..-........EEEEETTEEEEEE--G..TTCCCSEEECSC---H CS
  AICARFT_IMPCHas 165 alnrevdaetaeei.kkefleviiApsfeeealeilkkkknlrvlelke..e........elrsvsgglLvqerdeakieeeelkvvtkkkpte 247
                      a+nre+d +ta++i +++f+eviiAps+ e  lei ++kkn+r+l + e  +        +l++v+gglLvq++d  +i++++lkvvt++ p++
       EGE27402.1 321 AFNRELDSDTARTIvERQFVEVIIAPSIAEGVLEITSSKKNVRILVCGElpQptqraaqfDLKRVNGGLLVQNQDLGMIDKSDLKVVTERVPSD 414
                      ***********9984699*****************************9966155677889********************************** PP

                      HHHHHHHHHHHHCCCS-SS-EEEEETTEEEEEE-SSSSHHHHHHHHHHH CS
  AICARFT_IMPCHas 248 eeledllfawkvvkhvkSNaivlakdgqtvgiGaGqmsRvdsarlAvek 296
                      +el+dllfawkv+k+vkSNaiv+ak++qt+g+GaGqmsRv+sar+A+ k
       EGE27402.1 415 AELDDLLFAWKVAKYVKSNAIVYAKNHQTIGVGAGQMSRVNSARIAAIK 463
                      **********************************************865 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0   2.4e-29   1.1e-25       2      94 ..      16     127 ..      15     128 .. 0.96
   2 ?   -2.6   0.0       1.4   6.4e+03      49      66 ..     508     525 ..     493     531 .. 0.69

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 2.4e-29
                 HHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCH................HHHHHHHTTSCC...EEEEE--THHHHHHCHHHH CS
         MGS   2 lvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrv................eildaikngeid...lvintlypfkatvakdgyk 81 
                 +ve+a+ l+e gf +l+TgGT kllke+gi+++ev+ +tg+ e+++grv                 + + +++++id   +v+++lypf+ tvakdg+ 
  EGE27402.1  16 IVEFAQGLVESGFGILSTGGTFKLLKEHGIDAIEVSAHTGFAEMMDGRVktlhpkihggilgrrgIDDAIMNEHGIDridIVVVNLYPFANTVAKDGVV 114
                 89**************************************************************7777778889999999******************* PP

                 HHHHHHHTTSHEE CS
         MGS  82 irraaenidIplp 94 
                 + +a+enidI++p
  EGE27402.1 115 MSDAIENIDIGGP 127
                 ***********98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
                 CHHHHHHHHTTSCCEEEE CS
         MGS  49 rveildaikngeidlvin 66 
                 + e+ +a ++++i +v  
  EGE27402.1 508 DAEVIAAANEHGIAMVFT 525
                 347778888899988875 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.4e-05      0.11     209     287 ..     128     218 ..      99     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.4e-05
                     ETTHHHHC..TTTBEEEEHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEEC.ECSSEEEEECCH..........TEEEEEE CS
  Beta-lactamase 209 anlpaeae..gagglistardlarflglalegglllsaetlaqltaklssgttrpagiragl.glGwvladktga..........pgtfght 287
                     a+++++a+  ++ g+i++++d+ r l  +l+++  ls++t+  l+ k+  +t + +g+ a++ g  +++ ++t +           +tf+h+
      EGE27402.1 128 AMVRSAAKnhAHVGIITSPNDYSRIL-DELKNQGHLSHNTRFDLAVKAFEHTAAYDGMIASWlGARLPVDKETAPsddatattqfSRTFNHQ 218
                     33334444779***************.99*********************************999999999988888888888888888886 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.29   1.3e+03      39      79 ..     107     160 ..      84     166 .. 0.69
   2 ?   -0.7   0.0      0.43   1.9e+03      37      66 ..     251     281 ..     219     289 .. 0.55
   3 ?   -2.7   0.0       1.9   8.4e+03      57      84 ..     338     366 ..     325     379 .. 0.64
   4 ?    8.1   0.0   0.00081       3.7      72     106 ..     488     523 ..     484     529 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.29
                    EETTEES----T....T--...............EEEE-S-HHHHGGGHHHHHHH- CS
  CoA_binding_2  39 eilgekvyaslaedpepvd...............lvdvftppeatpeivkealalg 79 
                    ++    v+ s a   e++d                v ++t p++   i++e++ +g
     EGE27402.1 107 TVAKDGVVMSDA--IENIDiggpamvrsaaknhaHVGIITSPNDYSRILDELKNQG 160
                    555544444444..355555566666666666668999999999999999998776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.43
                    -SEETTEE.S----T....T--EEEE-S-HH CS
  CoA_binding_2  37 eeeilgek.vyaslaedpepvdlvdvftppe 66 
                    +++++g+  +y ++a+ + ++++v  ft p+
     EGE27402.1 251 AQQLQGKAlSYNNIADTDAALECVKSFTTPA 281
                    3344442235555554235555555555544 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.9
                    -EEEE-S-HHHHGGGHHHHHHH-.-SEEE CS
  CoA_binding_2  57 dlvdvftppeatpeivkealalg.akavw 84 
                    + v v++ p++++ +++  ++++ ++ ++
     EGE27402.1 338 QFVEVIIAPSIAEGVLEITSSKKnVRILV 366
                    46777777777777776664443255444 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.00081
                    HHHHHHH--SEEEE-TT..---HHHHHHHHHTT-EEE CS
  CoA_binding_2  72 vkealalgakavwlqpg..sedeeaaelaeeagirvv 106
                    ++ a+a+g+k+++ qpg   +d+e++++a+e+gi +v
     EGE27402.1 488 IDNAAAAGIKCII-QPGgsMRDAEVIAAANEHGIAMV 523
                    6789999999976.6666999*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3919.74
//
Query:       EGE27403.1  [L=460]
Description: moraxella IgD binding protein/hemagglutinin MID/Hag, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-18   67.0  35.8    1.7e-08   34.6   0.8    6.2  5  YadA_head    Head domain of trimeric autotransporter adhesin
    2.9e-17   62.5   5.3    2.9e-17   62.5   5.3    5.7  5  YadA_anchor  YadA-like membrane anchor domain
    7.9e-16   58.1  19.9    6.6e-13   48.8   2.7    4.8  5  YadA_stalk   Coiled stalk of trimeric autotransporter adhesin


Domain annotation for each model (and alignments):
>> YadA_head  Head domain of trimeric autotransporter adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.8   2.9e-12   1.7e-08       1      26 [.     174     199 ..     174     200 .. 0.96
   2 !   32.0   7.3   1.8e-11   1.1e-07       3      26 ..     203     226 ..     202     227 .. 0.96
   3 !    7.8   1.0   0.00074       4.4       3      26 ..     231     254 ..     230     255 .. 0.90
   4 !    7.6   1.3   0.00087       5.2      16      27 .]     275     286 ..     268     290 .. 0.79
   5 ?    1.7   0.1     0.062   3.7e+02       2      10 ..     418     426 ..     416     428 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.9e-12
   YadA_head   1 AsGknSiAiGynAtAsGdnSiAiGtn 26 
                 AsGk+S+AiG +A+A+G+ ++AiG +
  EGE27403.1 174 ASGKHSVAIGFQAKADGEAAVAIGRQ 199
                 9***********************76 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 1.8e-11
   YadA_head   3 GknSiAiGynAtAsGdnSiAiGtn 26 
                 G++SiAiG nA+A+Gd+SiAiGt+
  EGE27403.1 203 GNQSIAIGDNAQATGDQSIAIGTG 226
                 99*********************9 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00074
   YadA_head   3 GknSiAiGynAtAsGdnSiAiGtn 26 
                 Gk+S AiG  +t+ +dnS  +G+n
  EGE27403.1 231 GKHSGAIGDPSTVKADNSYSVGNN 254
                 67777*****************99 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.00087
   YadA_head  16 sGdnSiAiGtna 27 
                 +  nS+A+G+n+
  EGE27403.1 275 TESNSVALGSNS 286
                 556999999987 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.062
   YadA_head   2 sGknSiAiG 10 
                 +G++++A+G
  EGE27403.1 418 NGQGAVAVG 426
                 477777777 PP

>> YadA_anchor  YadA-like membrane anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   4.6    0.0057        34       4      32 ..     173     202 ..     171     226 .. 0.69
   2 ?    0.0   6.6      0.16   9.3e+02       3      49 ..     186     232 ..     185     257 .. 0.64
   3 ?   -0.8   0.2      0.29   1.7e+03      11      23 ..     286     298 ..     278     299 .. 0.65
   4 ?   -5.0   6.8         3   1.8e+04       8      44 ..     307     347 ..     300     359 .. 0.55
   5 !   62.5   5.3   4.9e-21   2.9e-17       1      60 []     400     460 .]     400     460 .] 0.99

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0057
  YadA_anchor   4 slpgkfsvgaGv.GgYkgqsAvAvGasars 32 
                  s+ gk+sv++G+ +  +g++AvA+G +   
   EGE27403.1 173 SASGKHSVAIGFqAKADGEAAVAIGRQTQA 202
                  567999999998899999999999976655 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.16
  YadA_anchor   3 vslpgkfsvgaGvGgYkgqsAvAvGasars.ngnlvvklgvavssggs 49 
                  + ++g  +v++G  +  g++++A+G  a    +  ++ ++++   +g+
   EGE27403.1 186 AKADGEAAVAIGRQTQAGNQSIAIGDNAQAtGDQSIAIGTGN-VVAGK 232
                  566777777777777777777777777766444444444444.33333 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.29
  YadA_anchor  11 vgaGvGgYkgqsA 23 
                   ++ +G++ g +A
   EGE27403.1 286 SAISAGTHAGTQA 298
                  4566777777766 PP

  == domain 4  score: -5.0 bits;  conditional E-value: 3
  YadA_anchor   8 kfsvgaGvGg...YkgqsAv.AvGasarsngnlvvklgvav 44 
                  +++ + ++G+   + gq+Av Av ++a  +++ + +++++ 
   EGE27403.1 307 TTTTAGATGTvkgFAGQTAVgAVSVGASGAERRIQNVAAGE 347
                  55555555533337788877333333333666666655554 PP

  == domain 5  score: 62.5 bits;  conditional E-value: 4.9e-21
  YadA_anchor   1 pqvslpgkfsvgaGvGgYkgqsAvAvGasars.ngnlvvklgvavssggsvgggvGvgyqw 60 
                  pq++ pg+++v+ G+++++gq AvAvG+s+ s ng +v+k++++++++g+vg++vG+g+++
   EGE27403.1 400 PQAYIPGRSMVTGGIATHNGQGAVAVGLSKLSdNGQWVFKINGSADTQGHVGAAVGAGFHF 460
                  9**********************************************************99 PP

>> YadA_stalk  Coiled stalk of trimeric autotransporter adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   9.4   1.2e-08   7.1e-05       2      40 ..       9      47 ..       8      50 .. 0.82
   2 ?   -2.5   1.0       1.2   6.9e+03      17      39 ..     197     219 ..     197     222 .. 0.75
   3 ?   -3.2   0.7         2   1.2e+04      23      34 ..     261     272 ..     250     281 .. 0.53
   4 ?   -2.5   0.6       1.2   6.9e+03      41      41 ..     302     302 ..     283     318 .. 0.55
   5 !   48.8   2.7   1.1e-16   6.6e-13       1      35 [.     339     376 ..     339     384 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.2e-08
  YadA_stalk  2 ItNVAaGtvsTDAVNgsQLyavnqnvannitnvtnntnn 40
                I+NV  Gt +TDA N++QL++v + ++ +  +++n+++n
  EGE27403.1  9 ISNVGKGTKDTDAANVQQLNEVRNLLGLGNAGNDNADGN 47
                9*********************99877666666665555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
  YadA_stalk  17 gsQLyavnqnvannitnvtnntn 39 
                 g+Q +a nq++a + ++++++++
  EGE27403.1 197 GRQTQAGNQSIAIGDNAQATGDQ 219
                 56778889999888888887766 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2
  YadA_stalk  23 vnqnvannitnv 34 
                 ++++v + ++n+
  EGE27403.1 261 TQTDVFGVGNNI 272
                 333333333443 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.2
  YadA_stalk  41 a 41 
                 +
  EGE27403.1 302 D 302
                 2 PP

  == domain 5  score: 48.8 bits;  conditional E-value: 1.1e-16
  YadA_stalk   1 kItNVAaGtv...sTDAVNgsQLyavnqnvannitnvt 35 
                 +I+NVAaG+v   sTDAVNgsQLy + q +an+++  +
  EGE27403.1 339 RIQNVAAGEVsatSTDAVNGSQLYKATQGIANATNELD 376
                 8*********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3359.60
//
Query:       EGE27404.1  [L=224]
Description: dihydroorotase-like protein (aspartate carbamoyltransferase non-catalytic chain) [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-08   34.8   0.1    3.5e-08   33.2   0.1    1.6  2  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1     2e-12   3.5e-08     178     301 ..      19     176 ..       5     181 .. 0.77
   2 ?   -1.0   0.0     0.049   8.8e+02     120     137 ..     185     202 ..     178     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2e-12
                   STCCHHTTTHCCEEEHCTCEEEHH.....HHHHHHHHHHHHCEE.......................HHHHHHHHSEHHHHHHHHHHHHTSCEEEEE CS
  Amidohydro_1 178 vaeslglldeiklilahgvhltpt.....eaellkerlkeagva.......................hcpfsnsilrsgrealrkaldeGvkvglgt 246
                    ae ++l + i ++ ++g+h + +     +++ l++++k++g++                        +  + ++++++ +al k l++G++ ++++
    EGE27404.1  19 LAETIALSKQILMTEETGIHAHFSqitcrTSVELIRHAKQKGLPitcdvamhqlhltdddiegynahAYVLPPLRSNTDQQALIKGLQDGTIDAICS 115
                   66778899999***********555569999999**********9777777666555555555555555555555********************** PP

                   ECT...TSSCCGGHHHH..HHHHHHHHHHCCTT.TTHCHCHHHHHHHHHTHHHHHHTT-TT CS
  Amidohydro_1 247 Dga...asgnslnllee..lrlalklqrgllye.deegglslkealrmaTingAkalgldd 301
                    +    +s + + + ++  ++ ++ +  +l  + +++g ls ++++++ ++n+Ak+ g++d
    EGE27404.1 116 HHEplsSSAKQAPFAQCqaGISNFDTFVSLGVKlVADGVLSTEQLVEKICLNPAKIAGITD 176
                   *999*95555555555555666665555556667889**********************86 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.049
                   EEEECGTCCSHHHHHHHH CS
  Amidohydro_1 120 alapheapafsdeelkea 137
                    ++p+ a++++++++  a
    EGE27404.1 185 LIDPNQAWTVTKDTMLSA 202
                   48999********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1736.78
//
Query:       EGE27405.1  [L=270]
Description: HpcH/HpaI aldolase/citrate lyase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-25   90.1   0.0    2.4e-25   89.0   0.0    1.6  1  HpcH_HpaI       HpcH/HpaI aldolase/citrate lyase family
    4.1e-17   62.3   0.2      6e-08   32.2   0.1    2.3  2  C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   2.7e-29   2.4e-25       3     221 .]       6     211 ..       4     211 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 2.7e-29
                 EEEEESTSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGG.HHHT.TSSEEEESS--SHHHH CS
   HpcH_HpaI   3 glflpganaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdle.vldl.gaqvvlvPkvetaeea 99 
                  lf+p+++ + ++ka  ++a +++iDlEdava  +K++AR    +al  lda  +  ++  +R+n+++s    +d++ +l+l  + +v++Pk +++ ++
  EGE27405.1   6 FLFVPATRLDWVSKAKQSKANAIIIDLEDAVADDQKNHAR----TALMALDAKGE--CSYWLRINAVHSMHHLDDITcMLKLnHLLGVVLPKCQNKHQV 98 
                 69*****************************777776666....78899999555..5********************777625789************ PP

                 HHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-TTSTTSHHHH..HHHHHHHHTTHCEEEE.EEE.E-SSH CS
   HpcH_HpaI 100 levvsalrepekgirganketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtkrspegtevl..dareriltaaraagia.aldtvasdi 195
                 + v++ + +p             +a iE+a g+ n+  Ia ++gl +  +G  Dl+ +lg + ++   ++   ++r  +l+++ a+g++  ++t++ d 
  EGE27405.1  99 ESVYHHIHKPV------------IAMIETAVGMANIAGIAHADGLWAMSFGRLDLMYELGVQPDSPASQLIfdKIRTDLLIHSVANGLHpPIETIFNDF 185
                 ***99998876............9*************************************9988888888899**************746******** PP

                 HHHHHHHHTTHCEEEEEEHHHHHHHH CS
   HpcH_HpaI 196 ddaegflaegalfvalGfdgkllinp 221
                 +d+ g+ a +++  + Gf g+ +i+p
  EGE27405.1 186 EDETGLAACVRHWCDFGFAGQIMIHP 211
                 ************************98 PP

>> C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   6.7e-12     6e-08      11     128 ..       7     112 ..       5     123 .. 0.70
   2 !   28.2   0.0   1.1e-10   9.8e-07     262     331 ..     200     269 ..     158     270 .] 0.88

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 6.7e-12
  C-C_Bond_Lyase  11 LYmPatrediaekilkqklegltslvlclEDavseeeveaAeenlkellkelaeaekekekeelpllFvRvRspeqlkellerlgealelltGfv 105
                     L++Patr   ++ ++k k +++++++++lEDav++++ ++A +     l +l+++     + +  l    v s+++l++++ +l  +l++l G+v
      EGE27405.1   7 LFVPATR---LDWVSKAKQSKANAIIIDLEDAVADDQKNHARTA----LMALDAKG----ECSYWLRINAVHSMHHLDDITCML--KLNHLLGVV 88 
                     99*****...6778888889999**************9988765....55566632....234444444555555566666666..********* PP

  C-C_Bond_Lyase 106 lPkftse.sleeylealkkanekl 128
                     lPk++++ ++e++ ++++k   ++
      EGE27405.1  89 LPKCQNKhQVESVYHHIHKPVIAM 112
                     ****76515667777777655444 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 1.1e-10
  C-C_Bond_Lyase 262 anGlvGKtvIhPsqialvqallvVskeeyedAldiles.akggvfkseyankmnEvkphraWAekilkrak 331
                       G+ G+ +IhP+qia+   +l+ ++e++  A++i+++ +k+g +     +km+++ p  +WA++++k ak
      EGE27405.1 200 DFGFAGQIMIHPKQIAVADGVLTAQAEQMAFAHAICQKyQKTGETVFAIDGKMVDL-PLINWAKNLIKVAK 269
                     579**********************************9777776666666****65.9*******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2143.24
//
Query:       EGE27406.1  [L=324]
Description: putative lysyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-31  110.1   0.0      3e-31  108.7   0.0    1.5  1  tRNA-synt_2  tRNA synthetases class II (D, K and N)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.0   1.7e-35     3e-31      21     309 ..      14     318 ..       8     322 .. 0.78

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 1.7e-35
                  HHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE........-E-S-SHHHHHHHHHCTHSEEEEEEEEE--S--BTTB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  21 vlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff........aLtqspqlylellivagidrvfqiaraFRaEdsrtdr 110
                  + + r+++++ +r ++e ++ +e++tPiLs++   ++   +   +++    f         +L  sp++  ++l++a  + ++qi ++FR+ +   ++
   EGE27406.1  14 NAKKRAQMLQHIRAFFEARNIMEVTTPILSQA---ANTDVYIQSVQAT---FQgatgqakgYLHTSPEFAMKRLLAAYQTPIYQICQVFRDNEKGHRH 105
                  6789****************************...5555555544444...33333445577***************999***************9** PP

                  -S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS.............-SS--HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxx RF
  tRNA-synt_2 111 hlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklnei.............gkdldkaderal 195
                  ++ EFt++e + +  + + + + l el++ + ++ ++ +  +i   +       ++pf  ++  + ++++                            
   EGE27406.1 106 NI-EFTMLEWYRPNFSLDALADELSELLSVVYQKPIHLT--QISYAQAFVHYLGIHPFDDMNTPNILRQCAVAhnihldmgddkqgW----------- 189
                  **.*****************************9984443..3333333333233444555555555554332222222223332220........... PP

                  HH...........HS--SEEEEEEEBGGGSTTCBBBSTTS.TTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHH.....SSSGGGGHHHHHH CS
                  xx...........xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx RF
  tRNA-synt_2 196 vk...........keknepvfvtdfPaelkpFyarkeedd.kkltesyDllingvElvgGslRiedpeeleeklkskgld.....eeaeekfswylea 276
                                  ++p++v+++P+ +  +++   + d  +++++++l+i gvE+++++ ++ +++el +++++ + +        +  ++ +l a
   EGE27406.1 190 -LdllfshliepkLGLQNPTLVINYPKLTAALAKTAVDADgYEIARRFELYIHGVEIANAYDELANSQELLKRFEQDNHErhrqgLPIMPIDYRLLAA 286
                  .23455556655455679***************998877769************************************99876555667889999999 PP

                  HHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 277 leyGapphgGlglGldRlvmlllgsesIrdvia 309
                   +  +p  +G++lG+dRl m+l g+ +I ++ia
   EGE27406.1 287 CDH-LPDCCGIALGIDRLFMVLQGQLNINQAIA 318
                  999.*************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2366.28
//
Query:       EGE27407.1  [L=351]
Description: D-isomer specific 2-hydroxyacid dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-33  114.2   0.0    6.4e-33  113.6   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    6.5e-15   55.0   0.0    8.9e-15   54.5   0.0    1.1  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    9.9e-07   28.5   0.0      2e-06   27.5   0.0    1.4  1  DUF3410        Domain of unknown function (DUF3410)
      0.007   16.5   0.0      0.013   15.7   0.0    1.6  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.039   14.5   0.0      0.083   13.4   0.0    1.6  1  XdhC_C         XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   1.8e-36   6.4e-33      35     178 .]     119     256 ..     100     256 .. 0.89

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 1.8e-36
                   TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STT....TTTSBSHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpe....trhlinaeelakmkkgailiNta 127
                   ++ ++GiiGlG+IG+++a+++k +g +v+++d++  ++       ++ +sl+e+l  +D++s+h+plt+     t++++na++lak++++a+liN a
    EGE27407.1 119 TNLRLGIIGLGNIGNTLARYAKRLGWQVFGFDPFLATD------SINNASLDEILD-CDVISIHTPLTKTgshpTYQMLNAQTLAKIRPKALLINSA 208
                   5779******************************7633......45678*****96.**********9865555999******************** PP

                   -GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C 128 RGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   RG+++de aLl+a+++++++ ++lDvf +ep+ +++ l+ l+  + tPHia
    EGE27407.1 209 RGEIIDESALLAAINQKQLS-VVLDVFPNEPFISQQLLYALK--LATPHIA 256
                   *******************9.999*********886665555..789**98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   2.5e-18   8.9e-15      21     124 ..      21     278 ..       2     285 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 2.5e-18
                 EEEEES....CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHH..TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH........... CS
                 xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
  2-Hacid_dh  21 evevkd....ellteellekakdadalivrsntkvtaevleal..pkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt........... 102
                 +ve+ +    +++++ l+   ++ dal++rs t+vt+e l  l    Lk+i+ a++G+D++D ++++ + i+ +n+ g+s++svA ++           
  EGE27407.1  21 QVELIKmagrAIDRQSLIT--HQPDALFIRSVTQVTQENLGDLsnTPLKFIGSATIGIDHIDTKYLADHHINFANASGCSKHSVAQYVitailhahqsp 117
                 5666666667777777777..899*******************9999**************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  EGE27407.1 118 ktnlrlgiiglgnigntlaryakrlgwqvfgfdpflatdsinnasldeildcdvisihtpltktgshptyqmlnaqtlakirpkallinsargeiides 216
                 ****************************************************************99999999999999999999999999999999999 PP

                 ........................................T-BHHHHHHHHHHHHHHHHHHH CS
                 ........................................xxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ........................................aaTeeaqeniaeeaaenlvafl 124
                                                         ++T e   +  +++ +++++ +
  EGE27407.1 217 allaainqkqlsvvldvfpnepfisqqllyalklatphiaGYTLEGKIRGTDMIYQAFCQTF 278
                 99999999999999999999999999999999999999999999999999999998888765 PP

>> DUF3410  Domain of unknown function (DUF3410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   5.6e-10     2e-06      27      61 ..     311     348 ..     290     349 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 5.6e-10
                 HH--CHHHHHHHHHCTT...CCCHHHHHHHT------G CS
     DUF3410  27 lvYDvrrDdalfRrele...kakgFdalRknYpeRREf 61 
                   YD++ D +++++ +      ++Fd+lRknY  RRE+
  EGE27407.1 311 WFYDIQADFEALKAAACphiLGNQFDMLRKNYHLRREW 348
                 57************88788999***************9 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.6e-06     0.013       2      30 ..     123     151 ..     122     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.6e-06
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-S CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynr 30 
                    +g+iGlG++G+ +a+  ++ g++v +++ 
     EGE27407.1 123 LGIIGLGNIGNTLARYAKRLGWQVFGFDP 151
                    79************************994 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05     0.083       2      34 ..     124     156 ..     123     231 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa 34 
                  i+G g++++ lar+a++lg++v  +dp  ++ 
  EGE27407.1 124 GIIGLGNIGNTLARYAKRLGWQVFGFDPFLATD 156
                 69***********************99977544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2522.75
//
Query:       EGE27408.1  [L=390]
Description: hypothetical protein EA1_02057 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-42  144.5  30.9    5.1e-42  144.2  30.9    1.0  1  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2  30.9   2.8e-46   5.1e-42       3     326 ..      16     346 ..      14     347 .. 0.91

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 2.8e-46
  AI-2E_transport   3 lilvllllllalypfiselllplliAlvlayllnpvvkfL.kkrg....vkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayid 91 
                      ++ +l++l++++ ++++ +++p+l+A++lay++ p+++f+ +k +    ++++l ++++ l++ v l++ v++l  ++++ +  +++ l+a + 
       EGE27408.1  16 ALTLLVILIVLCFKVVRFFIVPALWAGILAYVTFPIYTFFhTKVRlspsFSAFLMTFCISLMIGVPLIVGVFYLQHEVLSFVGMVIRRLQAGYL 109
                      566777788888888889**********************76666222245566667777778888899999999******************* PP

  AI-2E_transport  92 slqnilnelpslleelenliqalkqslskilsnilssilnslls...llasllglilslvlvllllffllldgeklrqgilkllpervrervka 182
                      +l +++++lp + ++ ++++ +++++ +++++ ++ ++ + l++   ++  +l+ + +l + l++lff+++dg+ l++ i++++ + + +r++ 
       EGE27408.1 110 DLPSQIKDLPVIGQTIKDTLWEINKNPETTMEAVRAWVQSHLYYgkmAFDAVLKNLAKLGMALMTLFFFYRDGKSLVRQIRQAMRNIIGDRIDD 203
                      ****************86899999999999999999998777754448999******************************************* PP

  AI-2E_transport 183 ilrelektlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltggikevlivlivvllvqliegni 276
                      ++  +  t +++++g  l+al++++l++ g+++ + p ++ll++++++++liP++ ++    + a+++l  g ++e++ + ++ +lv   ++n+
       EGE27408.1 204 YIDSVGATTQAVVYGIGLTALAQAILAGMGYAFTNAPNPILLTLITFVVALIPFGTPFAWGGV-AVWLLSQGHTTEGIGLGLWGILVISWVDNL 296
                      *****************************************************9988877776.9***************************** PP

  AI-2E_transport 277 lePklmgkrlglhplvillsllaggklfGlvGlilavpltavikaileay 326
                      ++P++++ +++++ ++i++ +l+g++ fG+vGl+++++++a+  a+ +++
       EGE27408.1 297 IRPIVISGATKIPFIIIFIGVLGGLTAFGFVGLFIGPVVLAIGLAVWREW 346
                      ******************************************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1080  (0.0602376); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2777.69
//
Query:       EGE27409.1  [L=152]
Description: hypothetical protein EA1_02062 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-41  139.9   0.0    4.1e-41  139.7   0.0    1.0  1  DUF188    Uncharacterized BCR, YaiI/YqxD family COG1671
     0.0053   17.0   0.0     0.0087   16.4   0.0    1.5  1  PIN_9     PIN like domain


Domain annotation for each model (and alignments):
>> DUF188  Uncharacterized BCR, YaiI/YqxD family COG1671
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.0   4.6e-45   4.1e-41       2     128 ..      18     148 ..      17     150 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 4.6e-45
      DUF188   2 iirvaerlkvevvlvansslrlpssplvetvvVdsgadaaDdaIveraeagDlvvTqDipLAarvlekgaaalsprGevyteenIdellamRdlmkklR 100
                 ii++a+r+++  v+van+  +lp+sp+ + vvV++g+d+aD++I++ a+++Dlv+T+DipLA+ vlekga++l+prGe ++++nI+ +l+ Rd+m++lR
  EGE27409.1  18 IIKTANRTQTMAVFVANRMTKLPPSPFLSYVVVGAGFDVADEYILQTAQPNDLVITSDIPLANDVLEKGAKVLTPRGEEFRKDNIKPRLNARDFMESLR 116
                 89************************************************************************************************* PP

      DUF188 101 rager....tggpkkfskedrsrFakaLdrll 128
                  +g+     +gg+k++s++d+ +Fa  L+rl 
  EGE27409.1 117 GTGVLdpksMGGQKPYSNKDKIAFAGGLNRLA 148
                 **98555559******************9985 PP

>> PIN_9  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   9.7e-07    0.0087      74     115 ..      55      94 ..      11      95 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.7e-07
       PIN_9  74 ekaDdailelakeldaavlvTnDreLkkrllekgipvilLRq 115
                 + aD+ il+ a+  d   ++T+D++L + +lekg +v++ R+
  EGE27409.1  55 DVADEYILQTAQPND--LVITSDIPLANDVLEKGAKVLTPRG 94 
                 569*********998..555*****************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1130.53
//
Query:       EGE27410.1  [L=374]
Description: phosphoribosylaminoimidazole carboxylase, ATPase subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-55  187.2   0.0    2.6e-55  186.6   0.0    1.2  1  ATP-grasp     ATP-grasp domain
    1.8e-15   56.3   0.7    1.1e-14   53.8   0.3    2.3  3  PurK_C        Phosphoribosylaminoimidazole carboxylase C-term
    1.9e-06   27.5   0.0    3.2e-06   26.8   0.0    1.4  1  CPSase_L_D2   Carbamoyl-phosphate synthase L chain, ATP bindi
     0.0005   19.5   0.0    0.00094   18.6   0.0    1.4  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.095   12.5   0.0    2.2  2  GARS_A        Phosphoribosylglycinamide synthetase, ATP-grasp
       0.04   13.4   0.0      0.072   12.5   0.0    1.3  1  ATP-grasp_5   ATP-grasp domain
      0.052   14.1   0.3       0.42   11.2   0.1    2.6  3  Pyr_redox     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.6   0.0     1e-58   2.6e-55       2     171 .]     109     289 ..     108     289 .. 0.97

  Alignments for each domain:
  == domain 1  score: 186.6 bits;  conditional E-value: 1e-58
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC............GTTCEEEEE----SEEEEEEEEEETTC CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal............keekvivEefvpfekElsvlvvrsaeG 88 
                 ++l++ + +f+av+s +el+ a+++lglp+v+K++r+gydGkGq+v++ ++d+ +a+e+l            +  ++i+E f++f++E+s+++vrs++G
  EGE27410.1 109 NRLNIDTVPFMAVNSLDELQTATNKLGLPLVLKTSRGGYDGKGQFVIKTQSDIATAWEELgdavtgdggltdAPAPLIAEGFIHFSREVSIIAVRSQNG 207
                 5789******************************************************************99999************************ PP

                 -EEE--EEEEEEETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS--GGGGGHHHHB CS
   ATP-grasp  89 etafypvvetvqedgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRpHnsGhvtldaa 171
                  +  yp+ve+++ +gil   +apa+  ++  ++a++ ++ki+++L++vGv+++ElFv  d+ l++nE+apR+HnsGh+t+++a
  EGE27410.1 208 DICYYPLVENHHTNGILSKTIAPAANADHLIEQAQSNISKILSHLDYVGVLTLELFVS-DDGLIANEIAPRVHNSGHWTIEGA 289
                 **********************************************************.455******************985 PP

>> PurK_C  Phosphoribosylaminoimidazole carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.46   1.2e+03      39      51 ..      26      38 ..      21      42 .. 0.81
   2 ?   -3.0   0.0       2.4     6e+03      41      53 ..     282     294 ..     282     296 .. 0.82
   3 !   53.8   0.3   4.5e-18   1.1e-14       1      51 [.     315     362 ..     315     366 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.46
      PurK_C 39 KmGHitvvgdsae 51
                K+GH  v  ++a+
  EGE27410.1 26 KLGHRCVFLEDAD 38
                9***999998876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.4
      PurK_C  41 GHitvvgdsaeel 53 
                 GH t+ g++  + 
  EGE27410.1 282 GHWTIEGANTSQF 294
                 9***999988776 PP

  == domain 3  score: 53.8 bits;  conditional E-value: 4.5e-18
      PurK_C   1 avMvNlLGedaeekleellaipgahlHlYgKeearpgRKmGHitvvgdsae 51 
                 +vM+N++G+ +  + +ell + g+h+H Y+K+  r gRK+GHitv++d+++
  EGE27410.1 315 SVMLNVIGKYP--DVSELLTHTGVHFHHYHKA-ERDGRKIGHITVMSDDND 362
                 79*********..*******************.**************9976 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.3e-09   3.2e-06       1     183 [.     100     281 ..     100     305 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.3e-09
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCC.TTTTEEEESSHHHHHHHHHHHHHHHHH....HHSTS-EEEEE--SSSE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafgl.GGkGmrvarneeelaelvkkalaeaka....afgnkqvlvekslkgpk 93 
                  D+ + k + +++n+++vp +a+  ++l+e  ++++++g P ++k++ g+  GkG  v+++++++a + ++  ++ +     + + + +  e +++  +
   EGE27410.1 100 DRLAEKVLFNRLNIDTVPFMAV--NSLDELQTATNKLGLPLVLKTSRGGyDGKGQFVIKTQSDIATAWEELGDAVTGdgglTDAPAPLIAEGFIHFSR 195
                  777888899**********999..********************9986538************99888765444332010023345678899****** PP

                  EEEEEEEEETTS-EEEEEEEEECCEC.TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CC CS
  CPSase_L_D2  94 eiEvevlrDakgnvitvcerenslql.rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsve 183
                  e+ +  +r ++g++ +    en        k  ++AP+    d+  ++ +++  k+++++++vg  t+e  ++   +  +  E+ +R+  +
   EGE27410.1 196 EVSIIAVRSQNGDICYYPLVENHHTNgILSK--TIAPAANA-DHLIEQAQSNISKILSHLDYVGVLTLELFVSD--DGLIANEIAPRVHNS 281
                  **************99999998765533333..45888764.566777788889****************9995..778888999998765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.7e-07   0.00094      37     103 ..       6      72 ..       3      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.7e-07
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--ST CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltp 103
                   kt+Gi+G G++G  +a+   ++g + ++ +      ++   + +++ +l++++  sD+ +l    tp
    EGE27410.1   6 KTIGILGGGQLGMMLAQATLKLGHRCVFLEDADGVPAALYGQVFKYNELDDFITASDVFTLEFENTP 72 
                   8***********************99999999887777888899****************9887776 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.7   4.3e+03      13      35 ..      38      60 ..      33      65 .. 0.83
   2 ?   12.5   0.0   3.7e-05     0.095       7     114 ..     105     218 ..     100     280 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.7
                TT--B--EEEESSHHHHHHHHHH CS
      GARS_A 13 agiptaeyeaftdpeeakeyiee 35
                 g+p+a y ++ +++e++++i++
  EGE27410.1 38 DGVPAALYGQVFKYNELDDFITA 60
                5899999*999999**9999986 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.7e-05
                 HHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEES.C-GGGT-EEEESSHHHHHHHHHHHCT..S-TTC..CCCSSEEEEE---.SEEEEEEEE CS
      GARS_A   7 kdllkkagiptaeyeaftdpeeakeyieeatakalVvKad.glaagKgvivakseeealkavkeile..kkkfG..eagekvviEelle.GeEvsllal 99 
                 k l+++ +i t  + a+++ +e+++  ++++ +  V+K + g   gKg  v k++++  +a +e+ +  +  +G  +a + ++ E +++   Evs++a+
  EGE27410.1 105 KVLFNRLNIDTVPFMAVNSLDELQTATNKLGLPL-VLKTSrGGYDGKGQFVIKTQSDIATAWEELGDavTGDGGltDAPAPLIAEGFIHfSREVSIIAV 202
                 7899******************************.9997636779******988777666666553210344445578899999999984679999998 PP

                 E.CTTEEEE---BEEE CS
      GARS_A 100 v.dgktvkplplaqdh 114
                   ++ ++   pl+ +h
  EGE27410.1 203 RsQNGDICYYPLVENH 218
                 5144455566666555 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.8e-05     0.072      16      58 ..     105     147 ..      97     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.8e-05
  ATP-grasp_5  16 kelleaygipvvetrlassaeeaveaaeeigypvvlKivspdi 58 
                  k l++ ++i++v+++ ++s +e   a +++g p vlK    + 
   EGE27410.1 105 KVLFNRLNIDTVPFMAVNSLDELQTATNKLGLPLVLKTSRGGY 147
                  678999*******************************976554 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00016      0.42       2      33 ..       8      39 ..       7      47 .. 0.88
   2 ?   -1.5   0.0       1.5     4e+03      15      68 ..      76     129 ..      73     136 .. 0.72
   3 ?   -2.9   0.0       4.2   1.1e+04      48      64 ..     329     345 ..     327     349 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdk 33
                + ++GgG +g++lA+a  +lg++   +e +d 
  EGE27410.1  8 IGILGGGQLGMMLAQATLKLGHRCVFLEDADG 39
                679*******************9988888775 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
                 HHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEE CS
   Pyr_redox  15 AgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeieg 68 
                 A+ la l +k +++   + l  + D+ a+k+l ++l    + ++  +++ e+++
  EGE27410.1  76 AKSLASLEHKGSLFPPTNALEIAQDRLAEKVLFNRLNIDTVPFMAVNSLDELQT 129
                 677777777778887777777788888888888888777777776666666665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.2
                 HHHHHTTEEEECSEEEE CS
   Pyr_redox  48 eklekngievllntkve 64 
                 e l++ g+++++ +k+e
  EGE27410.1 329 ELLTHTGVHFHHYHKAE 345
                 67888999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2893.34
//
Query:       EGE27411.1  [L=182]
Description: phosphoribosylaminoimidazole carboxylase, catalytic subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-65  217.6   0.1    5.9e-65  217.4   0.1    1.0  1  AIRC      AIR carboxylase


Domain annotation for each model (and alignments):
>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.1   3.3e-69   5.9e-65       1     147 [.      21     169 ..      21     170 .. 0.99

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 3.3e-69
                 EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHCHTTTEEEEEEEEESS--HHHHHHHHSSS-EEEEEE--STTCCHHHHHHH CS
        AIRC   1 kVgiimGSdsDlevmkkaaeilkelgveyevrvvSahrtpeelleyaeeaeerglkviIagAGgaahLpgvvaslttlPVigvPvkskalkgldsllSi 99 
                 kVgiimGS+sD+ +m+  a+il+++g+++e++vvSahrtp++l++ya++a+++glkviIagAGgaahLpg++as+t+lPV+gvPvks++l+g+dsllSi
  EGE27411.1  21 KVGIIMGSQSDWATMSLSAQILADFGIPFECQVVSAHRTPDKLFDYAKTAKDKGLKVIIAGAGGAAHLPGMCASQTPLPVLGVPVKSSTLSGWDSLLSI 119
                 69************************************************************************************************* PP

                 HT--TTS--EE-SST..HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHH CS
        AIRC 100 vqmPsgvpvatvaig..kaknAallAaqilalkdeelaekleeyreelke 147
                 vqmP+gv+v t+aig  +a nA+llA+qila++d++la+kl+e+r+++++
  EGE27411.1 120 VQMPKGVAVGTLAIGdaGAFNAGLLAIQILAIDDDALATKLDEFRQKQTQ 169
                 ***************9999***************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1380.02
//
Query:       EGE27412.1  [L=318]
Description: calcineurin-like phosphoesterase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-10   40.4   1.2    2.3e-09   38.1   1.2    1.9  2  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.022   15.0   0.0       0.03   14.5   0.0    1.3  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   1.2   2.6e-13   2.3e-09       5      76 ..       5      91 ..       1     147 [. 0.71
   2 ?    0.1   0.0      0.11   9.5e+02      17      57 ..     177     218 ..     155     248 .. 0.69

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2.6e-13
                 EEESBTBTTCCTHHHHHHHHHHHH..........HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS.............C CS
  Metallophos  5 vigDlHlalgggqlddllkllddl..........lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe.............g 76
                 +igD+H     g+ ++l+ lld+l          +++    +++  GD++drg+ + ++l+  ++ l +  ++  +++GNHe             g
   EGE27412.1  5 IIGDIH-----GHANKLAGLLDKLgyihdgishiAPHGHQAIFI--GDFIDRGNQQLATLQIvFDMLDN--NQALAIMGNHEynaigyatphpdgG 91
                 89****.....999999998877777777777656666667888..****************8888888..79*********65444433333330 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHHHHHTTESEEEEES.TSSSSSHHHHHHHHHH CS
  Metallophos  17 qlddllkllddllreekpdlvllaG.Dlvdrgdlekellell 57 
                   +++l++ll+ + ++  + ++l+ G D+v r    k++++ +
   EGE27412.1 177 EFYALERLLKGIESPLPAGVILVDGhDIVRRRTRIKWWQKDW 218
                  678888888888777455555555535777764444444433 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.4e-06      0.03       1      63 [.       1      89 [.       1     155 [. 0.71

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.4e-06
  Metallophos_2  1 MklaiiSDlH..........snldaleavlealkevgvdaiihaGDl...eeeepevleellela...pvlaVrGNnD...........e 63
                   M + ii D+H          ++l ++   +++++ +g  + i+ GD+   +++++ +l+ +++++   + la+ GN++           +
     EGE27412.1  1 MIYDIIGDIHghanklagllDKLGYIHDGISHIAPHGH-QAIFIGDFidrGNQQLATLQIVFDMLdnnQALAIMGNHEynaigyatphpD 89
                   66779*****8888777777777777777*****9955.56689**9854333333445444444777**********655555555440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2278.73
//
Query:       EGE27413.1  [L=258]
Description: tRNA pseudouridine synthase C [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-32  113.2   0.1    1.7e-32  112.8   0.1    1.2  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.1   9.2e-37   1.7e-32       2     160 .]      26     185 ..      25     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 9.2e-37
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      +v++nKPa++ v++      +k++ ++  +  +++ ++++++vhRLD++tsG+l++A +s++a  lak+fe+++++K Yla+v+   +  +g+i
       EGE27413.1  26 MVIINKPANMLVHRSW---LDKHETCFVVQTLRNQINQHVYPVHRLDRPTSGVLVFALDSQTAGLLAKQFENHHIQKSYLAVVR--GIIGTGRI 114
                      589*************...****************************************************************6..77778888 PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgs.......seksakvslveleletGrkhQiRvhlaa 160
                      +  ++    ++   +++  ++  k+a+t ++vl+          +  s+++slv l+++tGrkhQ+R+h+++
       EGE27413.1 115 DYALKP-RLDKIADKFSNPNKASKSAITDYQVLATTQqpfiscrRFDSSRYSLVCLTPITGRKHQLRRHMKH 185
                      888888.456666777789999***********************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2018.34
//
Query:       EGE27414.1  [L=145]
Description: putative membrane protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-54  182.4   8.9    6.1e-54  182.2   8.9    1.0  1  UPF0093   Uncharacterised protein family (UPF0093)
    0.00028   21.3   2.2    0.00028   21.2   1.4    1.5  1  CopD      Copper resistance protein D
     0.0029   17.7  11.0      0.015   15.3  11.0    1.8  1  DUF2269   Predicted integral membrane protein (DUF2269)


Domain annotation for each model (and alignments):
>> UPF0093  Uncharacterised protein family (UPF0093)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.2   8.9     1e-57   6.1e-54       3     146 .]       4     145 .]       2     145 .] 0.96

  Alignments for each domain:
  == domain 1  score: 182.2 bits;  conditional E-value: 1e-57
     UPF0093   3 elylwikalHiiavisWmAglfyLpRlfVyhaeakekseekevlkimerrLlkiimtpamiltlvlGllllalaeglvalssgWlhvKlllvllllayh 101
                 +++l+ika+H+i++++W+Ag+fyLpRlfVyha++++ +++ e++++mer+L++ imtp+mi+t+ +Gl+++ + ++l  ls+gWlh+Klllv+ll++yh
  EGE27414.1   4 TVFLYIKAFHVISMVCWFAGIFYLPRLFVYHAMSQD-TTSIERFSLMERKLYRGIMTPSMIATWGFGLWMISFSPSL-YLSQGWLHAKLLLVILLSIYH 100
                 5799*****************************988.55689*********************************87.6889***************** PP

     UPF0093 102 lvlaklrkklaagentksekfyrilNEvptlllivivllvvvkpf 146
                 l+++k r kla++ + ks+ ++r++NE+p+++li++v+lv+vkpf
  EGE27414.1 101 LACGKFRLKLAQNPHYKSHVYWRWFNEIPVVILIAVVILVIVKPF 145
                 *******************************************98 PP

>> CopD  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.4   4.7e-08   0.00028       7     103 ..      54     141 ..      42     143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.7e-08
        CopD   7 FsrlalaavavvlvtGvvnallrvglagllttayGrlllaKlalllvllalaalnrfrlvprleaatgaggqalrhrlrrsaalelvlalvvlllaa 103
                 +  +++++++++   G++++      ++l  ++ G +l+aKl+l+++l ++++++    ++ +    ++++ +     r++ ++ +v++++v++l+ 
  EGE27414.1  54 YRGIMTPSMIATWGFGLWMISFS---PSLYLSQ-G-WLHAKLLLVILLSIYHLACGKFRLKLA----QNPHYKSHVYWRWFNEIPVVILIAVVILVI 141
                 66778888888888888885555...7777766.6.*******************97666655....466666664555566788888888888775 PP

>> DUF2269  Predicted integral membrane protein (DUF2269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3  11.0   2.6e-06     0.015       2     150 .]       8     144 ..       7     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-06
     DUF2269   2 llkllHilsavlllgtgigiafyllrasrtrdaaviaevarlvvladwlftatavillpvtGlwlvhlagwpl.kqsWlllslvLyllagalwlpVvwl 99 
                 ++k  H++s v+ +++++ +    ++  +++d + i + + + +  ++ ++++++i+    Glw++  ++  + +q+Wl + l+L +l  +  l+    
  EGE27414.1   8 YIKAFHVISMVCWFAGIFYLPRLFVYHAMSQDTTSIERFSLMERKLYRGIMTPSMIATWGFGLWMISFSPSLYlSQGWLHAKLLLVILLSIYHLACGKF 106
                 799******************************************************************87766**********999988887776655 PP

     DUF2269 100 qirlrrlaeaaeeegaalpeeyvrlfriwfalgvlaflaliaifvLMvakp 150
                 +++l++  +             ++   +w ++  + +++lia+++L ++kp
  EGE27414.1 107 RLKLAQNPH-------------YKSHVYWRWFNEIPVVILIAVVILVIVKP 144
                 555444333.............22233444555555555666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1054.53
//
Query:       EGE27415.1  [L=58]
Description: hypothetical protein EA1_02092 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 464.26
//
Query:       EGE27416.1  [L=650]
Description: Moraxella catarrhalis adherence protein McaP [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-31  109.6   5.5    3.9e-31  108.6   5.5    1.5  1  Autotransporter  Autotransporter beta-domain
      2e-09   37.7   3.3    6.4e-09   36.1   3.3    1.9  1  Lipase_GDSL      GDSL-like Lipase/Acylhydrolase
      1e-05   26.0  10.1    4.2e-05   24.0  10.1    2.1  1  Lipase_GDSL_2    GDSL-like Lipase/Acylhydrolase family
     0.0067   16.3   0.0      0.017   15.0   0.0    1.7  1  OmpW             OmpW family
  ------ inclusion threshold ------
      0.043   14.0   5.6        1.2    9.2   5.6    2.9  1  OMP_b-brl        Outer membrane protein beta-barrel domain
       0.17   11.3   1.0       0.32   10.4   1.0    1.4  1  EURL             EURL protein
        2.1    8.5   5.8         16    5.6   0.2    3.3  4  Opacity          Opacity family porin protein


Domain annotation for each model (and alignments):
>> Autotransporter  Autotransporter beta-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   5.5   1.5e-34   3.9e-31      14     254 ..     393     629 ..     385     630 .. 0.93

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 1.5e-34
                      -BTTB--EEEEEEEEEEEEEEEETCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEEEEEECEETTCCE CS
  Autotransporter  14 gtdgaagydadtggvqlGaDyrlgdnlrlGvafgygrssadvdgaggsgdvdgyslglYgtyqgagglyldgvagygwydndtrrsvdlgglsd 107
                      +++   + + d  ++ lG+D+++ +n + G++++y+++++++ +++ ++dv+ +++glY ++   ++l +++ +g+ +++ ++ r++ ++g ++
       EGE27416.1 393 NQSLDTRNKIDRPTIKLGLDIAR-PNQHTGAYLTYQQQDYHL-SDSITADVKQTGIGLYHRHD-FDHLRISANLGVDHLSTQSLRQIMWDGENR 483
                      3444555566777899*******.*****************9.********************.****************************** PP

                      EEEEEEEEEEEEEEEEEEE-CECCGCEEEEEEEEEEEEEEEEEEEE-SS...TTSEEEEEEEEEEEEEEEEEEEEEECCCTTECEEEEEEEEEE CS
  Autotransporter 108 takgdydgnglsasleaGydfklsggwtlePqaqltysrlkldgftesg..gaaaltvdsqdadsltgrlGlrlsydfdlgggkltpylraawq 199
                      + +++ +g+   as++++y f   +++t  P++++  + +k++ f e++   ++al+++  d++sl++ +G+ ++y++++   kl++ + +++q
       EGE27416.1 484 NHQAHATGKRRYASVQGSYGFTQ-NNVTYRPYVGIHAQDIKQNRFFENQpnLSTALSFKLPDHQSLQADIGVNIDYAMND---KLNLLAGLGYQ 573
                      ***********************.***************************9***************************9...*********** PP

                      EECEE---EEEEEETTECCEEE...E-------BCEEEEEEEEEEEEECTTEEEEEEE CS
  Autotransporter 200 hefgddgktstasfagastags...ftvfgaelgrdslelgaGleaqlsdnlslylny 254
                      hef+d++kt+  +   +s+  +   f+++ +  ++++  +++G+++ l++n+ l ++ 
       EGE27416.1 574 HEFKDNNKTVETA--VLSNRDYhrsFVTTVPFDKKHTTHAHLGATLALGNNTHLNAGI 629
                      *********9999..5556556678****************************99875 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   3.3   2.5e-12   6.4e-09       2     198 ..      57     341 ..      56     343 .. 0.62

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.5e-12
                  EEEESHHHH.TT................THHHHHHHCCCCEECCCTTC..........GCEEEEEEECTTHHHHHHHCCH.................. CS
                  xxxxxxxxx.xx................xxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxx.................. RF
  Lipase_GDSL   2 vafGDSltd.Gd................gaatlntiqlktpknlnefdl.........aldrianignkgasdnelqqll.................. 55 
                  v+fGDSltd G                 +++++ t+  ++ +++++++           +++ +n++ +ga ++e + ++                  
   EGE27416.1  57 VFFGDSLTDtGRlvqigknslassvfnqAQPSFTTNTDPVWSSILAKSYghtadandgTTLTGTNYAVGGARTKEDVVKNapvpfftiplftipsaqt 154
                  89******973355554455555555554444444444444444444446667777776666666666666666666666777899999999998744 PP

                  ..ECTTTECHHHHHCTTS...EEEEE--CTCC-EECSSCTTTCEEHHHHHHHHHHH....HHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHH CS
                  ..xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  56 ..nkyplkseqlkalhpd...lviislGtNDsnlgkkstdaakkeaeeyiknlrea....ikelkeegapkaivvlvsppglgpqeekdakklgekgn 144
                    n y      l + ++d   l++++ G+ND+  +   + + +++a+e+i+   +     + +l ++ga++++v  ++  g++p e++   +   +++
   EGE27416.1 155 qiNRYL----TLNNHQADpkaLYTVWTGANDL--FEAAKAPTQLQAAEIITTAANDqanlVGQLGQAGAKHILVPSLPDVGVTP-EYAQDPTKSATAS 245
                  443333....3334444466************..9999************9999986666778888888888888887778888.4444444444444 PP

                  HHHHHHHHHHHHHHHHCTEEEECHHHHHHHT......HCCGCHCH..........................................TSSSB-HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx..........................................xxxxxxxxxxx RF
  Lipase_GDSL 145 efvgeynqrlndlaekdgfavvDlydelqgl......sgieqlka..........................................DglHpsekgye 194
                    +  ynq l + +++ + +v+  +     +      +                                                 D +Hps + ++
   EGE27416.1 246 LSAHIYNQTLYQSLNNQTTNVIAANTFALLKeavsnpA------GfgfsnvtepacqnldanlsslackpsdwqqtaananetyafaDKIHPSGRTHR 337
                  45555666665555544444443322222221112130......13344444444444444555555555556666669999999************* PP

                  HHHH CS
                  xxxx RF
  Lipase_GDSL 195 klae 198
                  +la+
   EGE27416.1 338 ILAQ 341
                  *997 PP

>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0  10.1   1.6e-08   4.2e-05       1     179 []      58     338 ..      58     338 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.6e-08
                    EEESHHHH.TCTTB.................CCHCHHCCCCCCCHHHTT-EEEEE..........EEHCCH-H....................... CS
  Lipase_GDSL_2   1 alGDSiTa.Gygad.................gggrsypaylarllaarlgldvvnn.........lgvsGatt......................a 47 
                    ++GDS+T+ G  ++                  + +++p +  + la+++g++   n         ++v+Ga+t                      a
     EGE27416.1  58 FFGDSLTDtGRLVQigknslassvfnqaqpsFTTNTDPVW-SSILAKSYGHTADANdgttltgtnYAVGGARTkedvvknapvpfftiplftipsA 152
                    8*******8877779999************9999999999.********8888888888889999********9***9999999999999999988 PP

                    .HHHHHHHH.CTGGG-T.SEEEEE--CCCCCTT--HHHHHHH..........HHHHHHHHCCC...GEEE..........CEEEEE-TTT-TTSTC CS
  Lipase_GDSL_2  48 llrllerlr.dllrlkp.dlvtiliGtNDlgrgvpaaaaaand........nleelidalraaapgaril..........vlgplpptpeaaadar 123
                    +++++++l+ +  +++p  l t++ G+NDl+  + a+++ +++        + ++l+ +l +a                  +g+ p +  ++++ +
     EGE27416.1 153 QTQINRYLTlNNHQADPkALYTVWTGANDLFEAAKAPTQLQAAeiittaanDQANLVGQLGQA------GakhilvpslpDVGVTPEYAQDPTKSA 242
                    888888888766677778899********9888888887776555556666444455555544......033335786664444444444444444 PP

                    CHHHHHHHHHHHHHHHHHHCT-EEE-H.......................................HHHHHHCCCCCGGBBTTS............ CS
  Lipase_GDSL_2 124 elnaviaaynealrevaaeegvpfvDl.......................................hdaladsgerladlladdg........... 169
                     +   ++ yn++l +  +++   ++ +                                                         +           
     EGE27416.1 243 TASLSAHIYNQTLYQSLNNQTTNVIAAntfallkeavsnpagfgfsnvtepacqnldanlsslackP-----------------Sdwqqtaanane 321
                    4555666777777777777666666555566666666666666666667555555555544334440.................233333344444 PP

                    .......SSB-HHHHHH CS
  Lipase_GDSL_2 170 .......lHPnaaGyrl 179
                           +HP+++ +r+
     EGE27416.1 322 tyafadkIHPSGRTHRI 338
                    55555559999999985 PP

>> OmpW  OmpW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.6e-06     0.017      53     148 ..     462     562 ..     453     592 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.6e-06
                 TEEEEEEEESECCCEEEC.SSTTCEECCC.EEE-EEEEEEEE.TSTTSSEEEEEEEE...EEEEECCECCCHHCTCCEEEE-SECEEEEEEEEEEECSS CS
        OmpW  53 nvavEllaattahnirvsglgsngkvgki.kvlPptltlqYh.geasskvrPYvGaG...vnyttffdeklgstgltdlklkdslgaagqiGvDikvkd 146
                 n++v  l      +i  +g + n + + + k   +++ + Y   +++ + rPYvG+    + +  ff+++ +++ + + kl d   + ++iGv+i  + 
  EGE27416.1 462 NLGVDHLSTQSLRQIMWDGENRNHQAHATgKRRYASVQGSYGfTQNNVTYRPYVGIHaqdIKQNRFFENQPNLSTALSFKLPDHQSLQADIGVNIDYAM 560
                 55666665556666666665555555554144567888888757777889******722256889***************************9765443 PP

                 SE CS
        OmpW 147 dw 148
                 + 
  EGE27416.1 561 ND 562
                 33 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.6   0.00048       1.2      78     167 ..     489     585 ..     380     649 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00048
   OMP_b-brl  78 tdikinllsvpvnagyafnlsds.vlpyggaGlg......ytkvevdvsgng.........asdsdtdfglglgaGveyaladnwslkaeYrytdlksd 160
                 ++ k ++ sv++ +g + n  +   +py+g+  +      + ++       +         +  ++      +g+ + ya++d+++l a+  y + ++d
  EGE27416.1 489 ATGKRRYASVQGSYGFTQN--NVtYRPYVGIHAQdikqnrFFEN-------QpnlstalsfKLPDHQSLQADIGVNIDYAMNDKLNLLAGLGYQHEFKD 578
                 3333333333333333332..21245555555553332222222.......122233334445555555555555555555555555555555555444 PP

   OMP_b-brl 161 adndlkn 167
                 +++++++
  EGE27416.1 579 NNKTVET 585
                 4333332 PP

>> EURL  EURL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.0   0.00012      0.32      91     217 ..     332     457 ..     313     489 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
        EURL  91 skkinwivqyaqnkdldsdsessktsqkqllnfrhkadkkllpqfdsqvpkysakwiegnagsisdyaqslleqkeatdlrlgll...qdagalwssre 186
                 s +  +i+       +ds+++ ++ +q+ l+ + ++++++l+ + ds   +  + wi+g+ ++ s  +++ +++  + +l+l +    q++ga  +   
  EGE27416.1 332 SGRTHRILAQYYRSIIDSPNQMGQLPQH-LIKHGQQSQQQLVRRLDSLNNHQQSLWIDGSISNQSLDTRNKIDR-PTIKLGLDIArpnQHTGAYLT--Y 426
                 5566666644445668999999999987.889***************************999998888877775.345666666522234444444..4 PP

        EURL 187 raqkkektesdseasvqrrhphysreelnsm 217
                 ++q+   ++s +    q+    y r ++ + 
  EGE27416.1 427 QQQDYHLSDSITADVKQTGIGLYHRHDFDHL 457
                 4555555555555555565566666655444 PP

>> Opacity  Opacity family porin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2     3e+03      64     107 ..     242     286 ..     228     301 .. 0.75
   2 ?    4.2   0.2     0.017        43      12      57 ..     421     465 ..     410     494 .. 0.80
   3 ?    5.6   0.2    0.0062        16      24     121 ..     483     585 ..     473     591 .. 0.63
   4 ?   -2.2   0.0       1.6   4.1e+03      91     110 ..     614     633 ..     602     642 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
     Opacity  64 akvsasaklpkkeafasetrvGlGvlaGvkykltpn.ltldtgvr 107
                 a  s+sa+++++  ++s  +    v+a   ++l +  ++  +g+ 
  EGE27416.1 242 ATASLSAHIYNQTLYQSLNNQTTNVIAANTFALLKEaVSNPAGFG 286
                 567889999999999999999999999999987544044445555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.017
     Opacity  12 adytryrkvnanrndnsaskvkgkllGlsviydfdtgskvkPyvGv 57 
                 + y  y++ +   +d+ +++vk   +Gl   +dfd   ++   +Gv
  EGE27416.1 421 GAYLTYQQQDYHLSDSITADVKQTGIGLYHRHDFDH-LRISANLGV 465
                 5688999999999**********************7.566555555 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0062
     Opacity  24 rndnsaskvkgkllGlsviydfdt.gskvkPyvGvrva........sngakvs..asaklpkkeafasetrvGlGvlaGvkykltpnltldtgvrynrl 111
                 rn ++ +  k +   + + y f   + +++PyvG+            n+ ++s  +s klp +++     ++ +Gv   ++y++++ l+l +g+ y++ 
  EGE27416.1 483 RNHQAHATGKRRYASVQGSYGFTQnNVTYRPYVGIHAQdikqnrffENQPNLStaLSFKLPDHQS----LQADIGV--NIDYAMNDKLNLLAGLGYQHE 575
                 44444444444556667778886515689******987666555554433333003333333333....4555555..579999999999999999987 PP

     Opacity 112 Grleatrvkt 121
                  + +++ v+t
  EGE27416.1 576 FKDNNKTVET 585
                 7777777766 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.6
     Opacity  91 Gvkykltpnltldtgvrynr 110
                 G+  +l +n +l++g++ n+
  EGE27416.1 614 GATLALGNNTHLNAGIQANH 633
                 67778888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4783.23
//
Query:       EGE27417.1  [L=324]
Description: biotin synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-17   63.6   0.0    3.7e-17   62.2   0.0    1.8  2  BATS         Biotin and Thiamin Synthesis associated domain
    2.7e-14   53.9   0.0    4.7e-14   53.1   0.0    1.3  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.3   1.1e+04      68      79 ..     143     154 ..     134     167 .. 0.61
   2 !   62.2   0.0   4.2e-21   3.7e-17       1      85 [.     198     292 ..     198     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.3
                 STT-TCCCCHHH CS
        BATS  68 tdgrsleedvkm 79 
                 t++r+++e ++ 
  EGE27417.1 143 TSTRTYDERLAT 154
                 444444444443 PP

  == domain 2  score: 62.2 bits;  conditional E-value: 4.2e-21
                 E--B----TCCCC...............HHHHHHHHHHSTTSE.CCCTCHH-HHHHHH.HHHCCT--EEE-C---TTTGGGSESSTT-TCCCCHHHHHH CS
        BATS   1 siprlrpikdtpl...............lkiiaalRlllPkag.illsgResaefrdq.lllklGansisagsktevggyaflttdgrsleedvkmlee 82 
                 +++ l+pi +tpl               +++ia++R+++P++  +l++gRes ++ +q l++++Gans ++g+k       +ltt ++s + d ++++e
  EGE27417.1 198 PVNLLVPIAGTPLgdkviaegrlsviewIRTIAVTRICCPTSYvRLSAGRESLSDGEQaLAFMAGANSFFYGDK-------LLTTGNQSTSHDDRLMAE 289
                 89***********************************************************************9.......****************** PP

                 TT- CS
        BATS  83 lGl 85 
                 lGl
  EGE27417.1 290 LGL 292
                 **8 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   5.3e-18   4.7e-14       4     162 ..      26     182 ..      23     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 5.3e-18
                  ESEESS--TTTSCCTT...HHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHH CS
                  xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   4 trgCnlrCsfCarpet...vrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerl 97 
                  t  C+ +C +C+++ +   +     ++ l + ++l+ ++++ +++g  ++++         +d+  l++ +++ +  g++++++   ++  +e++++l
   EGE27417.1  26 TGNCPEDCGYCSQSGHyrdKTGLTAEKRLEIKKVLAAARRA-KSQGsSRFCMGAAWKHPSEKDMPYLVDLISEVKAMGLETCMTLGMLK--PEQAKTL 120
                  668*************9999999999999999999999999.69997888888888888889999999999997655666666666666..8****** PP

                  HHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  98 lelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeelee 162
                  +++g+d+++++l++  +  +   +  + t++e+l+++   r+agi+ v+++ +++ Ge++e++ +
   EGE27417.1 121 ADAGLDYYNHNLDTSRNY-YDTVT-STRTYDERLATISHVRDAGIN-VCSGSIVGMGESREDRID 182
                  ******************.*****.99*******************.999999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2479.50
//
Query:       EGE27418.1  [L=163]
Description: hypothetical protein EA1_02107 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0097   16.4   0.1      0.015   15.8   0.1    1.4  1  SCP2      SCP-2 sterol transfer family


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   8.3e-07     0.015      18      98 ..      42     123 ..      24     126 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.3e-07
                 CCH-EEEEEEECTC.TEEEEEETTSTEEE.SSCTTBS-SEEEEEEHHHHHHHHCTS...S-HHHHHHTTSSEEEC-HHHHHHHHH CS
        SCP2  18 kklagvlrfdltdlkgsltldlkegqldv.aakdegkadvtlslsledllelaegk...lnpqkafmqgkLkieGDielaqklea 98 
                 k+ + +++f+  +   + ++++ +g +   + k++  +d t+  +++   + +  k   +  ++a+++g +ki GD +l++ l++
  EGE27418.1  42 KDKSLCIQFTAPNV--ERYFRFEQGYFGQaLGKAD-HPDLTIDFKDSLTGAKLFTKgdvAALMTAIQDGDVKIMGDYKLVLWLAG 123
                 33333667766666..7799999996555355544.9*******999877666666588899***************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1307.05
//
Query:       EGE27419.1  [L=371]
Description: phosphoserine phosphatase SerB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-21   78.2   0.0    1.6e-21   77.6   0.0    1.3  1  HAD          haloacid dehalogenase-like hydrolase
    4.8e-18   66.2   0.0      8e-18   65.5   0.0    1.4  1  Hydrolase    haloacid dehalogenase-like hydrolase
    1.5e-11   44.6   0.3    6.1e-10   39.3   0.1    2.8  3  Hydrolase_3  haloacid dehalogenase-like hydrolase
    0.00025   21.2   0.2        1.1    9.3   0.0    2.9  3  HAD_2        Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   3.6e-25   1.6e-21       1     187 [.     160     328 ..     160     329 .. 0.80

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 3.6e-25
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahra 99 
                 a fD+D TL+ ++ + +l++f + + + +  ++ + + + +++ +++            all+g +    + +++++a++i+   ++pga+++++a +a
  EGE27419.1 160 ACFDMDSTLIEEEVIVELAKFCGMEEQVSIITEQAMRGEIDFATSFA---------RRVALLEGIP---LDSIDEIIAKHIH---IQPGAVAAMRALKA 243
                 68**********99999999555443333333333333333322222.........3355666666...5666666666666...66************ PP

         HAD 100 aGdrvvvvSgglrplvepllaelgadevlatelevdd.rltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                  G+++v++Sgg++p+++ + + lg de +a+ l +d+  ltg   +++ +  g++k+  +++   ae  g++   v+ +GD+ +Dlp++
  EGE27419.1 244 IGYHTVLISGGFEPFAKHISQVLGMDEYYANPLLHDGnALTGM--VDDNILDGHQKAIIVKK--VAERLGLPMQQVICIGDGANDLPMM 328
                 *******************************************..*****************..88888888888*************8 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.8e-21     8e-18       3     210 .]     159     332 ..     157     332 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.8e-21
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtva 101
                 + +fD+d TL++ e     viv++                     a++++++++++ +++     ++++g+ ++ t+                 +r va
  EGE27419.1 159 LACFDMDSTLIEEE-----VIVEL---------------------AKFCGMEEQVSIITE-----QAMRGEIDFATSF----------------ARRVA 210
                 679********888.....*****.....................***************.....*************................55555 PP

                 HH....TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCES......STTT......SHHHHHHHH CS
                 xx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx......xxxx......xxxxxxxxx RF
   Hydrolase 102 ll....qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdiet......vakp......spegkvaai 183
                 ll     + ++++++ +    + p+a+ a+++Lka g+ +vl++g+++ +a+++ + lG d+y+++ + +d ++                +  ++++++
  EGE27419.1 211 LLegipLDSIDEIIAKHIH--IQPGAVAAMRALKAIGYHTVLISGGFEPFAKHISQVLGmDEYYANPLLHDGNAltgmvdD--NildghqKAIIVKKVA 305
                 5535554477777777766..*********************************999**9999988888888886566440..15555559999999** PP

                 HHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 184 reLqgkpeevamVGDgvnDaaalaaAg 210
                 ++L+ + ++v+ +GDg+nD++++a+ +
  EGE27419.1 306 ERLGLPMQQVICIGDGANDLPMMANSD 332
                 ***********************9875 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.24   1.1e+03       2      12 ..     161     171 ..     160     177 .. 0.86
   2 ?    1.6   0.0     0.043   1.9e+02      12      59 ..     226     273 ..     223     293 .. 0.88
   3 !   39.3   0.1   1.4e-13   6.1e-10     185     255 .]     294     363 ..     289     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.24
                  EEEIIIIIS-T CS
  Hydrolase_3   2 alDlDGTLlns 12 
                  ++D+D TL+ +
   EGE27419.1 161 CFDMDSTLIEE 171
                  69******987 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.043
                  TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEE CS
  Hydrolase_3  12 sdkkisektkeaikklkekgikvviATGRslravlpvleelgldlpvi 59 
                  ++ +i++ +++a++ lk+ g++ v+ +G    +++++ + lg+d ++ 
   EGE27419.1 226 KHIHIQPGAVAAMRALKAIGYHTVLISGGFEPFAKHISQVLGMDEYYA 273
                  566799999*******************99999999999999998875 PP

  == domain 3  score: 39.3 bits;  conditional E-value: 1.4e-13
                  T-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 185 gvsKgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  g +K+  +kk+a++l++++++vi +GDg ND++M+  ++lg+A   a++ v+++A+  ++ +  +GV +al
   EGE27419.1 294 GHQKAIIVKKVAERLGLPMQQVICIGDGANDLPMMANSDLGIAY-HAKPIVQAKASAAVNITGLEGVIYAL 363
                  789****************************************7.59999999999988888888887765 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.6   7.2e+03      54      73 ..      57      74 ..      12      86 .. 0.55
   2 !    8.5   0.0   0.00044         2       3     122 ..     162     272 ..     160     279 .. 0.80
   3 !    9.3   0.0   0.00025       1.1     138     169 ..     298     329 ..     287     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
       HAD_2 54 eseeeeekieellrkyneek 73
                +s  +e +i++l++ +++ +
  EGE27419.1 57 SS--QEADIDTLMQNWVDTE 74
                22..2346666666666655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00044
       HAD_2   3 FDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkeagyklgiv 101
                 FD+D Tl+ + e+i++ ++    e+++s ++e+ +r  i + +    r+++            l+ + e   k ++++ +g+  ++  Lk+ gy+  ++
  EGE27419.1 162 FDMDSTLIEE-EVIVELAKFCGMEEQVSIITEQAMRGEIDFAT-SFARRVALL------EGIPLDSIDEIIAK-HIHIQPGAVAAMRALKAIGYHTVLI 251
                 9******975.56777777777788899999999999999988.444444443......23445677777777.99999******************** PP

       HAD_2 102 TsksreaveekleqlgiesyF 122
                 + + +  +++  + lg+++y+
  EGE27419.1 252 SGGFEPFAKHISQVLGMDEYY 272
                 *99999999999999999986 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00025
       HAD_2 138 peviekaleklklkkeeviyvGDsptDieaak 169
                 + +++k+ e+l+l  ++vi +GD  +D+    
  EGE27419.1 298 AIIVKKVAERLGLPMQQVICIGDGANDLPMMA 329
                 55789**********************86655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3150.29
//
Query:       EGE27420.1  [L=418]
Description: hypothetical protein EA1_02117 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   14.1   0.1       0.36   11.1   0.0    2.4  2  CHASE8    Periplasmic sensor domain
        1.3    9.4   3.2         27    5.1   0.1    2.9  3  Orf78     Orf78 (ac78)


Domain annotation for each model (and alignments):
>> CHASE8  Periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     4e-05      0.36       5      59 ..      38      92 ..      34     123 .. 0.87
   2 ?   -0.5   0.0      0.17   1.5e+03      51      84 ..     284     317 ..     280     337 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4e-05
      CHASE8  5 aqqnlellarilaenveAAlvFeDaaaAreiLaaLkaepeiaaaavydaegklla 59
                 qq +e    +l++ + A+l+  D+++ + i +    ep+ia + +yd++g +l+
  EGE27420.1 38 NQQAVERSVMMLSQEIAAPLAAYDRVSMSVIAEPYVDEPMIAYVGIYDSQGGVLV 92
                455556666799****************************************998 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.17
      CHASE8  51 ydaegkllaeyaresseakeeleallaslllpep 84 
                 ++++g   + ya ++++++  + all++lll+ +
  EGE27420.1 284 FTEQGASVTLYATDDHAKTAAAAALLSQLLLMVN 317
                 5788888999999999999999999999888765 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0083        75      71     100 ..      11      40 ..       8      43 .. 0.76
   2 ?    5.1   0.1     0.003        27      57      88 ..     124     155 ..     102     169 .. 0.80
   3 ?   -2.3   0.1      0.64   5.7e+03      42      58 ..     198     214 ..     184     234 .. 0.48

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0083
       Orf78  71 lavvcvlvllyviyYfvilrerqkssvkep 100
                  a +++  l+  +++fvi++er  s+++++
  EGE27420.1  11 FAAIVLASLVLHLLFFVISTERGISTQNQQ 40 
                 45667777889999*******988777654 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.003
       Orf78  57 aekaqalnillisllavvcvlvllyviyYfvi 88 
                 +++a++l+  ++ ll+v+ + ++l++iy +v 
  EGE27420.1 124 VSRAKILSGNWVFLLSVIGLHIILWLIYGYVA 155
                 5566666777999***************9885 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.64
       Orf78  42 saaeknditekesnaae 58 
                 ++ ++ +it+++s++++
  EGE27420.1 198 DVVSDDEITASTSTENQ 214
                 33333333333333111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       897  (0.0500307); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3158.25
//
Query:       EGE27421.1  [L=76]
Description: hypothetical protein EA1_02122 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 593.38
//
Query:       EGE27422.1  [L=173]
Description: YgfB/YecA family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-14   53.7   7.6    3.4e-14   53.5   7.6    1.0  1  UPF0149   Uncharacterised protein family (UPF0149)


Domain annotation for each model (and alignments):
>> UPF0149  Uncharacterised protein family (UPF0149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   7.6   1.9e-18   3.4e-14       2     173 ..       5     170 ..       4     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.9e-18
                 HHHHHHHHCT-SS-H...HHHHHHHHHHHHCT.HHHCCCHHHHCCCC.......STCHHHHHHHHHHHHHHHHHHCTTTTS------...S-HHHHHHH CS
     UPF0149   2 eLdelLasaelpesaldlaelhGfltgllcgpellppeeWlpallgeapafsdeeegeallallkrlyneiaaqLadedefefelll...edladraep 97 
                 eL e+L+s++ +e  ld   +hGflt+ ++g+   p  +W+ a +++a    d++  ++++ +lk++ +++ ++L++e+  e+++     ++++     
  EGE27422.1   5 ELFEYLESSA-NEMGLDPIAAHGFLTATVVGK---PLPNWISAFFEGA----DAQVPDEVKSALKAWQQALVDTLKSEQPIELPFDAseeAEDFSEDGD 95 
                 6778888877.55555889*************...779*********7....99***********************9998888888766444444446 PP

                 HHHHHHHHHHHHHHCTTT..GGG-.SSHHHHHHHHHHHHHCT---TTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHH- CS
     UPF0149  98 laeWceGFlqGlglagdd.Wlkda.sseelaelLedlaalarleiaeeeeedeedeealeelieavpvavlllyeela 173
                 la+W+ GF+ ++  +++  W +da ++e++a l ++++ l++++   ee +++ d+e l+++++a++  +++l+ +++
  EGE27422.1  96 LAAWAIGFVDAMYSDENVdWFDDAaTEEDVAMLTLPMVLLSGID---EEMDEMRDDETLAQMANALEDNITELFLLFH 170
                 66**********7776645*7788899***************99...6788888899999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1380.08
//
Query:       EGE27423.1  [L=120]
Description: hypothetical protein EA1_02132 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-34  118.8   0.4    1.6e-34  118.7   0.4    1.0  1  YbjQ_1           Putative heavy-metal-binding
  ------ inclusion threshold ------
      0.025   14.9   0.1      0.031   14.6   0.1    1.3  1  DUF4156          Domain of unknown function (DUF4156)
      0.077   13.4   0.1       0.11   12.9   0.1    1.3  1  SeleniumBinding  Selenium binding protein
       0.13   11.7   0.0       0.14   11.5   0.0    1.1  1  SAM_MT           Putative SAM-dependent methyltransferase


Domain annotation for each model (and alignments):
>> YbjQ_1  Putative heavy-metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   0.4   3.5e-38   1.6e-34       1     104 []       1     103 [.       1     103 [. 0.98

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 3.5e-38
      YbjQ_1   1 mivtttesiegkeivevlgivtgetvrsrnvlkdilaglrslvGGelkayeeeleeareeAlerlkeeAeelGAnAvvgvrldtseigekgmlevlayG 99 
                 m +++ e+++++ i+e l++v+g+tvrs++v+kd+l+gl+++vG el+ay+e+leear+eA++r+ ++A+ lGA+A+vg+r++ts+i++ g++e+++yG
  EGE27423.1   1 MQLSNLEYLPNHIITERLDVVYGNTVRSKHVGKDFLSGLKNIVGSELTAYTELLEEARQEAMNRMITKAQVLGADAIVGIRFSTSNITA-GASELFVYG 98 
                 6788999********************************************************************************88.********* PP

      YbjQ_1 100 TAVkv 104
                 TAVkv
  EGE27423.1  99 TAVKV 103
                 ***97 PP

>> DUF4156  Domain of unknown function (DUF4156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   6.8e-06     0.031      28      71 ..      40      83 ..      23     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.8e-06
     DUF4156 28 tgsqgnwlsgiftsnkelvrgaandLrneAaalGgntivlvtst 71
                ++  g++l+   +  +e  ++a+n +  +A+ lG++ iv++   
  EGE27423.1 40 KNIVGSELTAYTELLEEARQEAMNRMITKAQVLGADAIVGIRFS 83
                44555555656566888999*******************98655 PP

>> SeleniumBinding  Selenium binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.5e-05      0.11      31      75 ..      58     103 ..      32     107 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
  SeleniumBinding  31 esdnvdkilkaleekvkekkglaligfkltai.dg..kllGyGtavka 75 
                      +++ +++++   + +v+  +++  i f +  i  g  +l+ yGtavk 
       EGE27423.1  58 RQEAMNRMIT--KAQVLGADAIVGIRFSTSNItAGasELFVYGTAVKV 103
                      4445555443..4556666666666677766633366*********96 PP

>> SAM_MT  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.2e-05      0.14     154     202 ..      18      68 ..       2      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.2e-05
      SAM_MT 154 lDPmyPhkkksalvKKe.mrvfqqlvGadeda.deLleaalalakkRvvVK 202
                 lD +y +  +s  v K+ +  ++++vG++  a +eLle a++ a +R++ K
  EGE27423.1  18 LDVVYGNTVRSKHVGKDfLSGLKNIVGSELTAyTELLEEARQEAMNRMITK 68 
                 677888888999998884578********987479*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 919.05
//
Query:       EGE27424.1  [L=138]
Description: hypothetical protein EA1_02137 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-15   56.5   0.2    4.6e-15   56.1   0.2    1.1  1  YbjQ_1    Putative heavy-metal-binding


Domain annotation for each model (and alignments):
>> YbjQ_1  Putative heavy-metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.2   2.6e-19   4.6e-15      20     103 ..      57     138 .]      40     138 .] 0.94

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 2.6e-19
      YbjQ_1  20 ivtgetvrsrnvlkdilaglrslvGGelkayeeeleeareeAlerlkeeAeelGAnAvvgvrldtseigekgmlevlayGTAVk 103
                 +v+g++v++++ +k+++a + sl+G +l+ ye++l++ar+e++ r k++A++ G++A  g+r++++e+ + g +e+layG AVk
  EGE27424.1  57 LVVGSVVIAQDKFKQVVAAMLSLFGKNLTVYETLLDRARREVVLRAKRQANDAGCHALYGLRFEMTEV-Q-GGVEILAYGVAVK 138
                 799*****************************************************************.4.89**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1089.84
//
Query:       EGE27425.1  [L=356]
Description: L-lysine 2,3-aminomutase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-09   38.1   0.0    2.7e-09   37.6   0.0    1.3  1  Radical_SAM  Radical SAM superfamily
    2.1e-09   37.5   0.2    9.6e-09   35.4   0.0    2.1  2  Fer4_14      4Fe-4S single cluster domain
    1.2e-07   32.1   0.0    2.4e-07   31.1   0.0    1.4  1  Fer4_12      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   4.6e-13   2.7e-09       2     115 ..     116     233 ..     115     267 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 4.6e-13
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS..TTHHHHHHHHHHTC.CCTEEEEEEECSSCHG...HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggeplly..pdfvellerlakla.vpgiritvetngtlpd...eek 93 
                  +vt +C+  C++C r +     +++   s+ e  e ++++ ++  v+evil+gg+pl    +++  +l+++ ++   + +r++   + +lp+    e 
   EGE27425.1 116 TVTGACAVHCRYCFRQH---FDYHANQPSTHEMDEVMDYITKHTEVNEVILSGGDPLSLnnKRLKLWLDKITAIGhIRTVRLHTRLPVVLPNrvdHEL 210
                  6899************9...6777777777777777777755555***********997557777777777777555555555555555555999*** PP

                  HHHHHHTT.-SEEEEEEBSSSHH CS
                  xxxxxxxx.xxxxxxxxxxxxxx RF
  Radical_SAM  94 lerllelg.vdrvslgleaadde 115
                  +++++ +    ++ l+++++++ 
   EGE27425.1 211 IALIRHYQkNIVIVLHINHPNEI 233
                  ********999999999999985 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.6e-12   9.6e-09       5      87 ..     118     196 ..     114     202 .. 0.78
   2 ?   -1.0   0.0      0.32   1.9e+03      64      94 ..     207     234 ..     199     259 .. 0.61

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.6e-12
     Fer4_14   5 lsgCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwlet 87 
                 ++ C ++C+ C++++ ++ ++++p+t+e+  ++++  +k+    +++ l+GG+PL   n+k l   ++++   ++   ++l t
  EGE27425.1 118 TGACAVHCRYCFRQH-FDYHANQPSTHEMD-EVMDYITKHTE-VNEVILSGGDPL-SLNNKRLKLWLDKITAIGHIRTVRLHT 196
                 799***********9.99999999998875.88865544444.588*********.558888888888887776666666655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.32
     Fer4_14  64 kkellklvkrlkeeypekkiwletngtleie 94 
                 ++el+ l++++++++    i l  n   ei+
  EGE27425.1 207 DHELIALIRHYQKNI---VIVLHINHPNEID 234
                 578888888888887...4444444444433 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0     4e-11   2.4e-07       7      70 ..     112     175 ..     106     187 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 4e-11
     Fer4_12   7 rlslf.vsgCnlsCkgCfnketwsfksgkeftkelleeiiedlkk.esiegltllGGEPllpenae 70 
                 r++l  ++ C ++C++Cf ++  + +++++ t+e+ +e+++ + k +++++++l+GG+Pl  +n++
  EGE27425.1 112 RVLLTvTGACAVHCRYCF-RQHFDYHANQPSTHEM-DEVMDYITKhTEVNEVILSGGDPLSLNNKR 175
                 566662456*********.7777888888888766.7788887763677***********955544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2564.20
//
Query:       EGE27426.1  [L=191]
Description: elongation factor P [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-27   94.5   0.0    6.7e-27   93.3   0.0    1.7  1  EFP_N           Elongation factor P (EF-P) KOW-like domain
      7e-25   86.5   0.8    1.5e-24   85.5   0.5    1.7  2  Elong-fact-P_C  Elongation factor P, C-terminal
    1.3e-21   76.3   0.0    2.6e-21   75.4   0.0    1.5  1  EFP             Elongation factor P (EF-P) OB domain


Domain annotation for each model (and alignments):
>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0   1.1e-30   6.7e-27       1      58 []       5      62 ..       5      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 1.1e-30
                EGGG--TT-EEEETTEEEEEEEEEEEEETTS--EEEEEEEETTTS-EEEEEEETT-EE CS
       EFP_N  1 saselkkGlvieidgklyvVlefehvkpGkGqafvrvklknlrtGakvektfkagdkv 58
                s++++k+Gl++++dg+++++le+e+vkpGkGqaf+rvkl+nlrtG+++e+tfk+gd++
  EGE27426.1  5 STNDFKAGLKVMLDGNPCSILENEYVKPGKGQAFNRVKLRNLRTGKVLEQTFKSGDSL 62
                69******************************************************85 PP

>> Elong-fact-P_C  Elongation factor P, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1   6.5e+03      18      34 ..     111     127 ..      94     129 .. 0.56
   2 !   85.5   0.5   2.5e-28   1.5e-24       1      56 []     133     188 ..     133     188 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
                     STTEEEEEETTS-EEEE CS
  Elong-fact-P_C  18 sggtKpatletGaevqV 34 
                     s+++   tl +Ga  +V
      EGE27426.1 111 SNALCTLTLFNGAPLSV 127
                     34555667777766555 PP

  == domain 2  score: 85.5 bits;  conditional E-value: 2.5e-28
                     EEEEEEE--SSS--SSSSTTEEEEEETTS-EEEEETT--TT-EEEEETTTTEEEEE CS
  Elong-fact-P_C   1 VeleVvetepgvkGdtasggtKpatletGaevqVPlFIneGdkIkvdTrtgeYvsR 56 
                     Vele+vet+pgv+Gdt+ gg Kpa letGa+v+VPlF+++++ ++vdTrtgeY  R
      EGE27426.1 133 VELEIVETDPGVRGDTSGGGGKPARLETGATVRVPLFVQQNEVVRVDTRTGEYQTR 188
                     89**************988**********************************988 PP

>> EFP  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   4.4e-25   2.6e-21       2      54 .]      71     125 ..      70     125 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 4.4e-25
                 EEEEEEEETTEEEEEETTT--EEEEEHHHHTTGCGG--TT-E..EEEEEETTEEE CS
         EFP   2 emqylYkdgdeyvFMdnetYeqielpkeqlgdaakfLkEgme..vtvllyegepi 54 
                 em+ylY+dg++++FM++et+eq++ +k ++gdaa++LkE+ +  +t++l++g p+
  EGE27426.1  71 EMNYLYNDGEFWHFMHPETFEQLQADKTAMGDAAQWLKENSNalCTLTLFNGAPL 125
                 8**************************************99999********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1420.11
//
Query:       EGE27427.1  [L=301]
Description: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.8e-103  343.6   0.0   8.9e-103  343.5   0.0    1.0  1  LpxC      UDP-3-O-acyl N-acetylglycosamine deacetylase


Domain annotation for each model (and alignments):
>> LpxC  UDP-3-O-acyl N-acetylglycosamine deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.5   0.0    5e-107  8.9e-103       1     268 [.       6     275 ..       6     277 .. 0.98

  Alignments for each domain:
  == domain 1  score: 343.5 bits;  conditional E-value: 5e-107
                 EEEESS-EEEEEE-TTT-SEEEEEEEE--TT-EEEEEETTSSETEEESSGGGEEEESSSEEEEETTEEEB--HHHHHHHHHTT--SEEEEESSSB---T CS
        LpxC   1 qrTlkksvslsGvGLhsGekvevtlkPaeantGivfrrtdlpekeipasienvsdtklsttlgkkgvkvstvEHllaAlaalgidnalievdgeEvPil 99 
                 qrT++k+++++G+GLhsG+kv++tl+Pa++ntGi+f+rtd+  +++p+ +e v+dt +s++l   ++++ tvEHll+A+aa+g+dn++i+vd++E+Pi+
  EGE27427.1   6 QRTVAKAITATGIGLHSGKKVTLTLSPAKPNTGIIFERTDIG-ATVPMAAELVQDTMMSSNLVLGDARIGTVEHLLSAIAAYGLDNLIIQVDAAEIPIM 103
                 89***************************************7.699*****************779********************************* PP

                 TSSSHHHHHHHHHHTEEEEEEE--EEEE-S-EEEEETTEEEEEEE-S.SEEEEEEEEESSTTCCC..CEEEEETTCCHHHHHTTT--EEEEHHHHHHHH CS
        LpxC 100 DGSaaefveaieeagikeqeaerkvlrvkkpveveegdkfvallPsd.elklsveidfehpaige..qslslelseesfakeiapARTFgflkevealr 195
                 DGSaa+f+++i++agi+eq++ +k++++ +p+ev++gdk+++l+P+d ++ l++eidf+h+ai    q+ +l++++ +fa+e+ +ARTFgflk++e+l+
  EGE27427.1 104 DGSAAPFLYLIDQAGITEQDELKKFIKIISPIEVNDGDKWARLEPYDkGFLLDFEIDFNHAAIAAteQTTQLDFNTANFAAEVGQARTFGFLKDIEYLQ 202
                 **********************************************956***********9988767999***************************** PP

                 HTTSSTT-STTTSEEEESSSBSSTT--SSTTHHHHHHHHHHHHHHGGGSSEEEEEEEEES--HHHHHHHHHHH CS
        LpxC 196 kaglakGgsldnavvideekvlneeglrfedEfvrHKiLDliGDLallgapllghvvaykagHalnnkllral 268
                 k++la+Ggsldnavv+de++v+n++glr+++EfvrHK+LD++GDL ++g+pll+++ ayk+gHalnn+l+ra+
  EGE27427.1 203 KNNLALGGSLDNAVVLDENSVVNQDGLRYPNEFVRHKMLDAVGDLFVIGHPLLAKFSAYKSGHALNNALIRAV 275
                 **********************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2423.98
//
Query:       EGE27428.1  [L=182]
Description: hypothetical protein EA1_02157 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00032   21.1   1.6    0.00045   20.6   0.2    2.1  2  DciA      Dna[CI] antecedent, DciA


Domain annotation for each model (and alignments):
>> DciA  Dna[CI] antecedent, DciA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2   2.5e-08   0.00045      21      78 ..      51     108 ..       9     120 .. 0.89
   2 ?   -1.5   0.1      0.19   3.3e+03      19      28 ..     160     169 ..     140     176 .. 0.46

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.5e-08
        DciA  21 alarllqaWeeivGpelaahcrpvklrdgtLvvevesgawateLryqkpqllerlnee 78 
                   + ++qaW+ +++ e+ + c++v++++ +  ++++s+++a + ry+ ++ +++l+ +
  EGE27428.1  51 HTQLIRQAWAGLLPNEILSACQVVNVSSVEIALAMSSPTAANHARYMMESCIQALRTY 108
                 4556788***********************************************9975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.19
        DciA  19 alalarllqa 28 
                   +++rl+qa
  EGE27428.1 160 VTQNERLNQA 169
                 2333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1249  (0.0696637); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1526.89
//
Query:       EGE27429.1  [L=225]
Description: hypothetical protein EA1_02162 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-07   30.9   0.1    9.2e-07   29.4   0.1    1.8  1  CHAP      CHAP domain


Domain annotation for each model (and alignments):
>> CHAP  CHAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   5.1e-11   9.2e-07       9      69 ..     111     177 ..     104     188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 5.1e-11
                 SHHHHHHHHHHHHS......SSSSSSECTCCH.HCEEEEEECSTBS--TTEEEEEETTTTBCT-EEEE CS
        CHAP   9 qCvefaywrlrqag......gnaddWnnakka.kgyknqanvgsstpkvGdivvfdrggeggyGHVai 69 
                  C+ ++   l+ ag       +a++++  + a +g++ + n++++ p+vGdi+vf+r+ ++++GH+ i
  EGE27429.1 111 RCALYVRKALQSAGyeftpqPSAYQYAHGTLAsAGFT-KLNNSNYVPQVGDIAVFNRTAKNPHGHIQI 177
                 6999**9998988888877646999966666645577.566777799************999***988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1987.06
//
Query:       EGE27430.1  [L=209]
Description: hypothetical protein EA1_02167 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.06   12.4   0.1      0.086   11.9   0.1    1.1  1  DUF1513   Protein of unknown function (DUF1513)


Domain annotation for each model (and alignments):
>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.8e-06     0.086     156     178 ..     134     156 ..     128     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.8e-06
     DUF1513 156 laedlnrlSiRHlavaddgtvlv 178
                 la++++ lSiRH+av ddg vl+
  EGE27430.1 134 LADTQHTLSIRHIAVLDDGYVLT 156
                 78999**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1837.30
//
Query:       EGE27431.1  [L=105]
Description: CRS1 / YhbY domain protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-20   72.2   0.1    3.5e-20   71.9   0.1    1.1  1  CRS1_YhbY  CRS1 / YhbY (CRM) domain
  ------ inclusion threshold ------
      0.056   13.1   0.1      0.063   12.9   0.1    1.2  1  DAGK_cat   Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> CRS1_YhbY  CRS1 / YhbY (CRM) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.1   3.9e-24   3.5e-20       6      84 .]      10      88 ..       6      88 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 3.9e-24
   CRS1_YhbY  6 lrrLrhlairlkpkvkiGkaGvtkevvdeiheklkteelvkvkcegppalnmkrmaeiLeektgglviqrsgtsivLYR 84
                 ++Lr ++++l+p+v+iG++Gvt++v++e+ ++l ++el+k+k+   +a+++k +++ ++++t+++vi+++g++++L R
  EGE27431.1 10 IKALRGIGHHLNPVVTIGGNGVTPSVIEEVARALTDHELIKIKIPAGTADDRKAYVAAIADATESEVIHHIGRMVLLLR 88
                689*****************************************7777888***********************99976 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     7e-06     0.063      53      98 ..      18      63 ..       2      87 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7e-06
                HCC-SEEEEEESHHHHHHHHHHHCT.HHCTTSEEEEEE-SS--HHHH CS
    DAGK_cat 53 eegvdlivvaGGDGtvsevlnglle.elatkpplgiiPlGtgNdlar 98
                + + + +v +GG G+   v++ +++  +++++    iP+Gt++d   
  EGE27431.1 18 H-HLNPVVTIGGNGVTPSVIEEVARaLTDHELIKIKIPAGTADDRKA 63
                4.56789******************644444444469*****99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 955.63
//
Query:       EGE27432.1  [L=210]
Description: FtsJ-like methyltransferase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-55  186.9   0.0    4.2e-55  186.6   0.0    1.1  1  FtsJ             FtsJ-like methyltransferase
    0.00025   20.9   0.0      0.019   14.8   0.0    2.2  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.15   11.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.6   0.0     7e-59   4.2e-55       1     174 [.      35     208 ..      35     210 .] 0.99

  Alignments for each domain:
  == domain 1  score: 186.6 bits;  conditional E-value: 7e-59
                 CCCCHHHHHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS CS
        FtsJ   1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvsDgapdv 99 
                 yr+R+ayKLlei+ek +l+k+g+tvvDlg+aPG+wsqv+ q +g +g ++a D+ pm+ l++v +iqgd++++++ ++i + +++r vd+v+sD+ap++
  EGE27432.1  35 YRARAAYKLLEINEKTGLIKKGMTVVDLGSAPGSWSQVAGQLVGDAGTLIASDILPMDTLENVIFIQGDFREEAVFNQIMNEVGGRAVDVVLSDMAPNT 133
                 9*******************************************99***************************************************** PP

                 -CHHHHHHHHHCCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHCCEEEEEEEE-SS--CCG-EEEEEE CS
        FtsJ 100 sgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvc 174
                 sg+ ++d+ + + L++ a+ +alk+l  gg +++k+f+ge +++l +q++k F+k++ +kP++sr++s+e+f+v+
  EGE27432.1 134 SGMAAVDQPRMMYLCELAVDFALKVLPVGGALIMKVFQGEGSQELRAQMQKQFSKIKSIKPAASRPRSKEMFWVA 208
                 *************************************************************************98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.2e-06     0.019       2     127 ..      54     187 ..      53     204 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.2e-06
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklled.......ekfDlilsnevl... 84 
                      +kg++v+DlG++ G  + ++ +++g+ ++++  Di +              l+nv F qgd+ e +   +++       + +D++ls+ +    
       EGE27432.1  54 KKGMTVVDLGSAPGSWSQVAGQLVGDAGTLIASDILPM-----------DTLENVIFIQGDFREeAV--FNQimnevggRAVDVVLSDMAPnts 134
                      78999999999999999999999999999888887663...........458899999999999333..6667778999*********666666 PP

  Methyltransf_31  85 ........naladpdkileeiervlkpggilliedpr..llaelpakveeesk 127
                                ++ ++ +   + +vl  gg+l++  ++  + +el+a+++++  
       EGE27432.1 135 gmaavdqpRMMYLCELAVDFALKVLPVGGALIMKVFQgeGSQELRAQMQKQFS 187
                      643445556666666666699*************9997777888898888776 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.5e-05      0.15       9      87 ..      43     126 ..      29     192 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.5e-05
  Methyltransf_23   9 lsdklerllpk...lraggrvLdiGcGtGillevlre.ngf..svtgvDlspeaveiae...kakkaqkdqfdeqeaaepqgkfdlIv 87 
                      l +  e    k    ++g+ v+d+G + G++++v+ +  g   ++++ D+ p++  +     + ++ +   f+++  ++  +  d++ 
       EGE27432.1  43 LLEINE----KtglIKKGMTVVDLGSAPGSWSQVAGQlVGDagTLIASDILPMDTLENVifiQGDFREEAVFNQIMNEVGGRAVDVVL 126
                      222233....234368999**************9955234445666666666544444344455555556665555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1573.91
//
Query:       EGE27433.1  [L=631]
Description: cell division protease FtsH [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-66  222.1   0.5      8e-66  221.5   0.5    1.3  1  Peptidase_M41    Peptidase family M41
    6.4e-47  159.3   0.0    3.1e-46  157.1   0.0    2.1  2  AAA              ATPase family associated with various cellul
      3e-15   55.8   0.0    6.2e-15   54.7   0.0    1.6  1  AAA_lid_3        AAA+ lid domain
      7e-09   36.0   0.0    1.5e-07   31.8   0.0    2.3  2  FtsH_ext         FtsH Extracellular
    4.5e-05   23.5   0.0     0.0004   20.4   0.0    2.5  1  AAA_5            AAA domain (dynein-related subfamily)
      5e-05   22.7   0.0    9.7e-05   21.7   0.0    1.4  1  TIP49            TIP49 P-loop domain
    0.00025   20.8   0.0     0.0015   18.3   0.0    2.3  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0003   21.2   0.6      0.036   14.5   0.1    3.0  3  AAA_16           AAA ATPase domain
     0.0012   19.1   0.3       0.29   11.4   0.1    3.2  3  AAA_22           AAA domain
     0.0026   17.9   0.0      0.017   15.3   0.0    2.4  2  AAA_2            AAA domain (Cdc48 subfamily)
     0.0031   17.3   0.0     0.0067   16.2   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
     0.0033   16.8   0.2     0.0069   15.8   0.2    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0046   17.1   0.0      0.013   15.7   0.0    1.8  1  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.036   14.5   0.0      0.098   13.1   0.0    1.8  1  AAA_17           AAA domain
      0.037   14.1   0.0       0.13   12.2   0.0    1.9  2  AAA_14           AAA domain
      0.046   13.2   0.2       0.17   11.4   0.2    1.9  1  AAA_7            P-loop containing dynein motor region
      0.053   13.2   0.0       0.19   11.4   0.0    2.0  1  Sigma54_activat  Sigma-54 interaction domain
      0.066   13.7   0.1       0.25   11.9   0.1    1.9  1  ABC_tran         ABC transporter
      0.091   12.5   0.0       0.38   10.5   0.0    2.0  2  AAA_24           AAA domain
       0.11   11.9   0.2       0.26   10.7   0.2    1.5  1  PhoH             PhoH-like protein
       0.12   12.6   0.0       0.46   10.7   0.0    2.0  2  AAA_28           AAA domain


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.5   0.5   9.3e-69     8e-66       1     191 []     408     594 ..     408     594 .. 0.96

  Alignments for each domain:
  == domain 1  score: 221.5 bits;  conditional E-value: 9.3e-69
                    XX--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHHS-BGGGHHHHHHHHH CS
  Peptidase_M41   1 rvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlslPeedklsltkeellarlavllGGraaEelifgevttGasnDlekatk 96 
                    +v++e+e++++AyHEaGHalv+ ll+++dpv+Kvti+PRg alG+t++lPe+d +s  k+++l+++++l+GGr+aEe++ ++ +tGasnD+e+atk
     EGE27433.1 408 MVLREEERRATAYHEAGHALVAELLPGTDPVHKVTIMPRGWALGVTWQLPEQDAISNYKDKMLNEISILFGGRIAEEIFVNRKSTGASNDFERATK 503
                    5889******************************************************************************************** PP

                    HHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHHH CS
  Peptidase_M41  97 iarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeieel 191
                    +ar+mvt++Gmsd+lG++ +e ee+   f      +++++se+t++++d+e+++++e++y  a +++ e++++++a++eaL++ Et+d+e++ ++
     EGE27433.1 504 LARAMVTRYGMSDELGVMVYEAEEHGGYFG----GSTRTISEATQQKVDDEIRHILEAQYGVAYQLIDENHDKMHAMVEALMKWETIDREQLLQI 594
                    *********************999865555....78899***************************************************99765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   0.0   3.6e-49   3.1e-46       1     131 [.     195     327 ..     195     328 .. 0.97
   2 ?   -1.2   0.0       3.1   2.6e+03      65     114 ..     549     602 ..     502     605 .. 0.64

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 3.6e-49
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vl++GppGtGKTllaka+a e++v+f++isgs++++++vg +++++r++f++ak++a p+i+fiDEida++++r    g+ ++e+e+++nqLl e+dg+
  EGE27433.1 195 VLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEMFVGVGASRVRDMFEQAKKNA-PCIIFIDEIDAVGRHRgsgMGGGHDEREQTLNQLLVEMDGF 292
                 799*****************************************************9.*****************988889****************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 + +++ vivi+atnr+d ld+allr gRfdr++ ++
  EGE27433.1 293 EGNDG-VIVIAATNRVDVLDKALLRpGRFDRQVSVG 327
                 **866.*************************99876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.1
                 ETGGGHHHHH....TTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGG CS
         AAA  65 DEidalaksr....sgseseeeervvnqLlteldgvkkkeskvivigatnrpdk 114
                 DEi  + +++     +  +e+++++ +   + +++++ ++++++ i+a+ +p++
  EGE27433.1 549 DEIRHILEAQygvaYQLIDENHDKMHAMVEALMKWETIDREQLLQIMAGETPRE 602
                 555555555555432223333333333334456666666677777877777665 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   7.3e-18   6.2e-15       2      45 .]     351     394 ..     350     394 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 7.3e-18
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfee 45 
                 vd+++LA+ T+G+SGA la+l++eAal A rr+ ++++m+dfe+
  EGE27433.1 351 VDINALARGTPGFSGAQLANLVNEAALFAARRNKDSVDMHDFED 394
                 9*****************************************96 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   1.7e-10   1.5e-07       2     106 ..       6      91 ..       5      94 .. 0.91
   2 ?    1.9   0.0      0.33   2.8e+02       4      44 ..     102     154 ..      99     186 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.7e-10
    FtsH_ext   2 llwlllallllllllslfggsgtgstkeisyseFledleqgnvekvvvqestisalirrptgdgvsttkkgnstttystptlgsvesleekLeealksk 100
                 llwl +++++++++++l   sg+ +   ++ys F++ ++qg++++v++ + +i+           +t+ +g+ + t+ +        ++++L  +l+++
  EGE27433.1   6 LLWLAIIGIVVVIFSNL--DSGKADADMMNYSAFVTAVSQGEIKDVKISGEEIT-----------GTKVNGSEFETVRPEI------TDNELMPLLREH 85 
                 79***************..99****************************99999...........9999999999988887......778888888888 PP

    FtsH_ext 101 gvdves 106
                 +v+v +
  EGE27433.1  86 NVEVQG 91 
                 888765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.33
    FtsH_ext   4 wlllallllllllslfg...........gsgtgstkeisyseFl.edleqgnv 44 
                 +ll a++ +ll+  lf+           g g g ++ +s+ +   ++l++++v
  EGE27433.1 102 QLLMAAFPILLIVGLFWlimrgmsgggaGGGMGGRNPMSFGKSKaKMLSEDQV 154
                 56677777777777777776766677665555577777773333355554444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.7e-07    0.0004       1     134 [.     194     314 ..     194     317 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.7e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +vl+vGppGtgK+ la+ +a   + +++ + ++++ +    +g  +        v   +  +a+   ++i+++DE++ + ++  + +    +er+  l+
  EGE27433.1 194 GVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEMFVGVGASR--------VRDMFE-QAKknAPCIIFIDEIDAVGRHRGSGMGGGHDEREQTLN 283
                 59****************************9999875444444444........444444.44446889999999999888888888888888887777 PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHH CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspal 134
                 ++  +++  +      + via++n++d     l++al
  EGE27433.1 284 QLLVEMDGFEG--NDGVIVIAATNRVD----VLDKAL 314
                 66655544321..12388888888887....555555 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.1e-07   9.7e-05      50      88 ..     192     228 ..     151     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.1e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88 
                  r+vL++Gp+gtGkt la ai+ e  ++vpf ++sgs++
  EGE27433.1 192 PRGVLMVGPPGTGKTLLAKAIAGE--AKVPFFSISGSDF 228
                 599*******************98..57*********86 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.8e-06    0.0015      36      94 ..     195     261 ..     180     267 .. 0.68
   2 ?   -2.9   0.0       5.9     5e+03      21      38 ..     298     315 ..     292     319 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-06
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgP.vlek.....agdlaalltnleekd..vlfideih 94 
                 vl++GpPG Gkt lak ia e +v + + sg   +e      a+ +  ++ + +++   ++fidei 
  EGE27433.1 195 VLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSdFVEMfvgvgASRVRDMFEQAKKNApcIIFIDEID 261
                 9***********************9988887623443111112223333444333323377777775 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.9
      RuvB_N  21 ifieaakkreealdhvll 38 
                 +++ aa +r + ld  ll
  EGE27433.1 298 VIVIAATNRVDVLDKALL 315
                 667788888888888887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   4.2e-05     0.036      24      48 ..     190     216 ..     168     230 .. 0.73
   2 ?    1.6   0.0      0.37   3.1e+02     123     147 ..     240     263 ..     235     291 .. 0.77
   3 ?    0.8   0.0      0.65   5.6e+02      43     106 ..     550     615 ..     546     627 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.2e-05
      AAA_16  24 p..elvllsGesGvGKsslvrellral 48 
                 +  + vl +G++G+GK+ l+++++ ++
  EGE27433.1 190 TipRGVLMVGPPGTGKTLLAKAIAGEA 216
                 2559****************9998655 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.37
      AAA_16 123 lkrllallsrderplvlvlDdlqwa 147
                 ++++++++++   p ++++D+++ +
  EGE27433.1 240 VRDMFEQAKK-NAPCIIFIDEIDAV 263
                 5667778888.677*******9954 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.65
      AAA_16  43 ellralekdggif...lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala 106
                 e+++ le+++g++   + ++ d+ ++ ++ ++ +++++re+ll+ ++ e+   e+  +++  ++ +a
  EGE27433.1 550 EIRHILEAQYGVAyqlIDENHDKMHAMVEALMKWETIDREQLLQIMAGETPR-EPKNYQHIVQTPVA 615
                 666666666433335566666666666777899999*9*9**9999999444.77777776666555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00034      0.29       9      29 ..     196     216 ..     193     234 .. 0.84
   2 ?    2.7   0.0      0.17   1.4e+02      79     112 ..     241     285 ..     233     308 .. 0.61
   3 ?    0.6   0.0      0.76   6.5e+02      71     123 ..     540     592 ..     485     611 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00034
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 + +G++GtGKT+l++ ++ ++
  EGE27433.1 196 LMVGPPGTGKTLLAKAIAGEA 216
                 569************998776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
      AAA_22  79 lealeqalraravielliiDEaqhlr....s.........eealeeL 112
                 ++++eqa +++  + ++ iDE++ +     s         e+ l++L
  EGE27433.1 241 RDMFEQAKKNA--PCIIFIDEIDAVGrhrgSgmggghderEQTLNQL 285
                 34444444444..46*********96654415556665556666666 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.76
      AAA_22  71 erlsseellealeqalraravielliiDEaqh.lrseealeeLrsllnl.srkgv 123
                 ++++++ + + +++ l+a++ ++  +iDE +  +  ++++e L ++  + +++++
  EGE27433.1 540 SEATQQKVDDEIRHILEAQYGVAYQLIDENHDkM--HAMVEALMKWETIdREQLL 592
                 4556666667777777777776777777777755..5555555444333123333 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.7   4.1e+03      20      54 ..     142     176 ..     130     182 .. 0.76
   2 !   15.3   0.0   1.9e-05     0.017       6      84 ..     195     270 ..     193     296 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.7
                 HHHHHHHTT-....-EEEEEGGG---.----THHHH CS
       AAA_2  20 akalaellfvkkekkliradaselle.eeevehlvs 54 
                  k+ a++l+ +++ k++ ad   + e ++ev+++v+
  EGE27433.1 142 GKSKAKMLS-EDQVKVTFADVAGVEEsKQEVAEIVD 176
                 567788888.89999999998888886667777665 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.9e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----...- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk...e 84 
                 +l++gp g+Gkt+laka+a   +v    ++  +  s++ e   +   v    +   + +++++    i+++DEid + ++   +
  EGE27433.1 195 VLMVGPPGTGKTLLAKAIAGEAKV----PFFSISGSDFVE---MFVGVGASRVRDMFEQAKKN-ApcIIFIDEIDAVGRHrgsG 270
                 6899******************98....************...44444444444444433333.358********998864332 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.8e-06    0.0067      49      90 ..     194     235 ..     184     264 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.8e-06
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveel 90 
                 +++++Gp+G+GK+ la a++ ea    +s++     +++  +
  EGE27433.1 194 GVLMVGPPGTGKTLLAKAIAGEAKVPFFSISGSDFVEMFVGV 235
                 6899***************99986666666555555555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   8.1e-06    0.0069      24      43 ..     194     213 ..     182     217 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.1e-06
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                    +l+vGppG+GKt+lak+++
    EGE27433.1 194 GVLMVGPPGTGKTLLAKAIA 213
                   58***************986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.5e-05     0.013       2      32 ..     195     227 ..     195     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.5e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdt 32 
                 vl+vG+pG+GK+ la+ ++ + +  ++ +s  +
  EGE27433.1 195 VLMVGPPGTGKTLLAKAIAGEAKvpFFSISGSD 227
                 79***************9988776665565555 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00011     0.098       1      54 [.     198     252 ..     198     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
                 EE-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSHSSHHHHCTSHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa.Gdllreeakrgglakardemrklpleek 54 
                 +G+PG GK+ +++ ++ + +++++s  G+ + e+    g+++ rd +++++++  
  EGE27433.1 198 VGPPGTGKTLLAKAIAGEAKVPFFSIsGSDFVEMFVGVGASRVRDMFEQAKKNAP 252
                 7****************99999998767777788888888888888877766655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016      0.13       5      76 ..     195     263 ..     192     311 .. 0.68
   2 ?   -2.2   0.0       4.5   3.9e+03      51      74 ..     549     570 ..     532     589 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla...dpekllelileklkeekktylflDEiqev 76 
                 ++++G+  +GKT l+k ++ e       + ++++   ++ ++      +++ +++ +  k++   ++f+DEi  v
  EGE27433.1 195 VLMVGPPGTGKTLLAKAIAGEAK-----VPFFSISGSDFVEMFvgvGASRVRDMFEQA-KKNAPCIIFIDEIDAV 263
                 6789**************98887.....444444444443333111122455666664.5558999******988 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.5
      AAA_14  51 kllelileklkeekktylflDEiq 74 
                 + ++ ile  +  +  y ++DE +
  EGE27433.1 549 DEIRHILEA-Q-YGVAYQLIDENH 570
                 223344443.2.367888889865 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2    0.0002      0.17      33      58 ..     192     217 ..     181     265 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
       AAA_7  33 kkpvllvGptGtGKtviikdllkkld 58 
                  + vl+vGp GtGKt+++k +  + +
  EGE27433.1 192 PRGVLMVGPPGTGKTLLAKAIAGEAK 217
                 5789*************998776655 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.19      19      45 ..     189     215 ..     176     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
                      CTSSS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  19 aktdlsvlitGesGtGKellaraihea 45 
                      a+ +  vl++G  GtGK+lla+ai  +
       EGE27433.1 189 ATIPRGVLMVGPPGTGKTLLAKAIAGE 215
                      566778*****************9754 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00029      0.25      14      36 ..     195     217 ..     187     227 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00029
                 EEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllk 36 
                 v +vG+ G+GK+ L+k++ag+ k
  EGE27433.1 195 VLMVGPPGTGKTLLAKAIAGEAK 217
                 679*****************976 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00044      0.38       5      76 ..     195     262 ..     192     284 .. 0.62
   2 ?   -1.9   0.0       2.6   2.2e+03     183     190 ..     539     546 ..     502     585 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00044
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtide 76 
                 +l++Gp+g+GKT lak +  + k+ f+ + + ++ ++   ++   +   ++d +++ +++ +   +++iD id 
  EGE27433.1 195 VLMVGPPGTGKTLLAKAIagEAKVPFFSISG-SDFVEMFVGV---GASRVRDMFEQAKKNAP--CIIFIDEIDA 262
                 7899************996544444444433.3233333333...44444444444433333..3566666665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.6
      AAA_24 183 lktskses 190
                 + + +++ 
  EGE27433.1 539 ISEATQQK 546
                 33333332 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2    0.0003      0.26      22      41 ..     195     214 ..     190     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0003
                 EEEE--TTSSTTHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalav 41 
                 v ++Gp GtGKt+la a+a 
  EGE27433.1 195 VLMVGPPGTGKTLLAKAIAG 214
                 6799***********99985 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00054      0.46       2      27 ..     195     221 ..     194     250 .. 0.79
   2 ?   -1.8   0.0       3.7   3.1e+03      12      49 ..     535     576 ..     528     623 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00054
      AAA_28   2 ivitGgestGKTtlleaLa.argypvv 27 
                 + ++G+++tGKT l++a+a + ++p +
  EGE27433.1 195 VLMVGPPGTGKTLLAKAIAgEAKVPFF 221
                 6789**************944466655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.7
      AAA_28  12 KTtlleaLaar....gypvvpEaareileeklakgedalpwv 49 
                  T ++++ +++    +++++ Ea   +  ++ ++++d++++ 
  EGE27433.1 535 STRTISEATQQkvddEIRHILEAQYGVAYQLIDENHDKMHAM 576
                 554444444333444555555555555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 4353.67
//
Query:       EGE27434.1  [L=258]
Description: lyso-ornithine lipid acyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-19   68.7   0.0    1.3e-18   66.9   0.0    1.8  2  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   7.2e-23   1.3e-18       2     134 ..      61     182 ..      60     183 .. 0.96
   2 ?   -1.0   0.0     0.068   1.2e+03      97     107 ..     226     237 ..     205     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 7.2e-23
  Acyltransferase   2 vrvtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklv 95 
                      v+v + e +p+ +  + v+NH s+lD+++   ++       +v++++k+e+ ++p++g l++++g+ fi+R + ++  ++ ++i+e l+eg  v
       EGE27434.1  61 VTVIQIEPVPQ-RHGLWVSNHVSWLDIPVVGSVA-------PVFFLSKAEIGKWPIFGRLAKAGGTLFIQR-GSGDVGSVSDQIAEFLSEGSSV 145
                      67888899997.999*****************77.......9*****************************.8999999*************** PP

  Acyltransferase  96 viFPEGtrsregellpfkkGlvrlaakakkgvpivPvai 134
                      ++FPE t++   ++ + +  l ++a+++  ++pi+P++i
       EGE27434.1 146 IFFPEATTTDGKQIKKIYGKLLKAAIDT--NLPICPMVI 182
                      ****************************..*******97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.068
  Acyltransferase  97 iFPEGtrsre.g 107
                      i+PEG++ re +
       EGE27434.1 226 IYPEGRDHRElT 237
                      899999988843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2009.79
//
Query:       EGE27435.1  [L=786]
Description: penicillin-binding protein 1A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-61  206.6   0.0    3.5e-61  205.8   0.0    1.4  1  Transgly        Transglycosylase
    3.3e-34  118.5   0.0    3.3e-24   85.6   0.0    3.1  2  Transpeptidase  Penicillin binding protein transpeptidase dom
    1.1e-15   58.3   0.0    2.5e-15   57.2   0.0    1.6  1  PCB_OB          Penicillin-binding protein OB-like domain


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.8   0.0   5.9e-65   3.5e-61       2     178 .]      69     244 ..      68     244 .. 0.98

  Alignments for each domain:
  == domain 1  score: 205.8 bits;  conditional E-value: 5.9e-65
    Transgly   2 gellaeleeeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklek 100
                 ++l++++  ++ +  v+++eip+ +++a++a+ED++F+eh+G+++kg+ rA+ + ++ ++ + GgSTit+Q++kn+fls ert++rKl+e+++A k+e+
  EGE27435.1  69 NKLIGQY-GNRYSLPVTFDEIPERMIQAFLAAEDDTFFEHSGISVKGMGRALTEVISDNDAQTGGSTITMQVAKNYFLSPERTINRKLTELFIARKIEN 166
                 6788888.589999************************************************************************************* PP

    Transgly 101 klsKdeILeaYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlermk 178
                 +l+K+eIL++Y+N++ylg+++yGi+aAar+y++k+ + Lt+a++a++agl+kaPs+ynp+ npe+a +rr++++ rm+
  EGE27435.1 167 ELTKNEILTLYVNKIYLGEGTYGIQAAARRYYSKNLESLTIAQMAMIAGLPKAPSAYNPVVNPERAMERRNWIIGRMH 244
                 ***************************************************************************995 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   5.6e-28   3.3e-24       1     204 [.     430     608 ..     430     636 .. 0.85
   2 !   27.4   0.0     3e-10   1.8e-06     207     303 ..     665     752 ..     647     755 .. 0.81

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 5.6e-28
                     EEEEEEETTT-BEEEEEEESE-TTTHHCCTCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-SSSSEE CS
  Transpeptidase   1 gaavvldaktgevlamaskpsydpnakvgkneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdnkgsegi 95 
                     ga v ld+++g+  a ++  +++ +++        nra+q+  +PGS++K+++ aaale+g ++pd+ + d  ++++    ++  + d +  + +
      EGE27435.1 430 GALVSLDPENGALRAVVGGFHFNHSKF--------NRAIQGYRQPGSIIKPFIFAAALESGQYTPDSLISDAAIRVGR---WQPKNADGRYTGDM 513
                     68899*****************98888........88************************************99665...5555555578899* PP

                     EHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTT.SBB-HHHHHHHHHHHHTTTEEE--BSEE CS
  Transpeptidase  96 tlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiG.ltvtplqlaqayaaiangGklvkPhlvk 189
                     tlr+al+ S nt   +l ++ g d+ r+ ++++g  +       + +           +t++++ G   +tplq+a+ +a+i+ngG + +P++++
      EGE27435.1 514 TLRRALTLSRNTPAIRLLRSAGVDESRHLMNAMGGLE------IKRMP----------STLALALGaADATPLQMATGFATIINGGHRIQPYFIE 592
                     ****************************999987333......22222..........35666777789************************** PP

                     EEEECTT.EEEESS-E CS
  Transpeptidase 190 aivdpdg.vrkvkpke 204
                     +i++ d+ ++++ +++
      EGE27435.1 593 RIYNFDNeTIYQANPQ 608
                     ***9998755554444 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 3e-10
                     EE-S-HHHHHHHHHHHHHHHHCTTTTGCGTCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SEEEEEEECTCS....SSSSCCHH CS
  Transpeptidase 207 klpisketaekvkeglkgvvsrgsgtataavegykvagKTGTAevagkkgngkkegakiswfvgyapadnpkyavavlieqpk....eaaggkaa 297
                      ++ s +ta ++ +++++v ++g+g+ ++a    +v gKTGT++ a++           +wf+g+ p+  ++ +v v +++p     +++gg aa
      EGE27435.1 665 PRVLSHQTAYDISNMMREVITSGTGRRARALGRSDVGGKTGTTNLAKD-----------AWFAGFHPT--NVAVVWVGFDTPStlgnSEYGGVAA 746
                     57899******************99999988889************72...........4*******8..5566666666666667777777777 PP

                     HHHHHH CS
  Transpeptidase 298 apiakk 303
                      pi  +
      EGE27435.1 747 LPIWVN 752
                     776655 PP

>> PCB_OB  Penicillin-binding protein OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   4.1e-19   2.5e-15      24     112 .]     339     428 ..     319     428 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 4.1e-19
                 HCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEEEEEE-TT..S-EEEE---SS CS
      PCB_OB  24 alkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvvlvrkeed.egewrLrQvPev 112
                  l+  ++++ ++pA V++v ++s++++l++get+ti ++g++war++ ++++ g    +a +++k+G +v++++ ++ +  wr++ +P+v
  EGE27435.1 339 SLEGRKNFDHIYPAKVTKVHNQSFEAKLQSGETVTIGWSGMNWARRYYDANRVGGGYSNAHQMVKVGNIVRISPINEaKTAWRMESIPKV 428
                 57778899*******************************************************************96579********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 5680.32
//
Query:       EGE27436.1  [L=644]
Description: heat shock protein 90 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.7e-128  429.8   1.3   1.5e-124  416.7   0.2    2.0  2  HSP90        Hsp90 protein
    1.8e-11   44.5   0.1    3.5e-11   43.6   0.1    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.2e-10   41.3   0.4    2.7e-10   40.2   0.4    1.6  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   5.4e-06     0.032       1      28 [.     193     220 ..     193     236 .. 0.85
   2 !  416.7   0.2  2.5e-128  1.5e-124      64     485 ..     230     642 ..     218     644 .] 0.94

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.4e-06
                 GGGSHHHHHHHHHHCCTTSSS-EEEEEE CS
       HSP90   1 eyleekklkelvkkySeFinfpiyllke 28 
                 +yl+++++k+lv+kyS+ i+ pi+++k+
  EGE27436.1 193 NYLNDQHIKSLVNKYSDHISLPIQMHKQ 220
                 59**********************9765 PP

  == domain 2  score: 416.7 bits;  conditional E-value: 2.5e-128
                 .XXXXXXXXXXEEEEEEESXXSXGGGSXGGGSXHHHHHHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEE CS
       HSP90  64 ekkktkkvketvkewellNkqkpiWlrkpkevteeeYkeFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVf 162
                  +++ k    t+ ++e++N+  ++W+++p++++++eY+eFYk+ls d+ +pla++h ++eg v+++ +Lf+P++ap+dl+ +   ++++ +kLYv+rVf
  EGE27436.1 230 GEPTGKGEYITTDDYETVNQANALWTKSPSDISDDEYHEFYKNLSYDYAKPLAYTHNRVEGRVQYTQLLFIPSKAPMDLYAR---EQQHGLKLYVKRVF 325
                 3677777788999********************************************************************6...78999********* PP

                 EESXXTTSSXGGGTTXEEEEEESSSXSSSTHHHHHTCHHHHHHHHHHHHHHHHHHHTSXHHH.......HHTHHHHHHHHHHHHHHHXGGGHHHHHTTX CS
       HSP90 163 itdefedllPkyLsFvkGvvdsddLPLNvsREtlqqnkilkvikkklvrKvlemlkklaeekee.....ykkfykefsknlklGiiedsanrkklakLl 256
                 i++++e+llP yL+FvkGv+d+ dLPLNvsRE+lq+++ +k i+    r+vl +l++la++++      ++ fy+ef++ lk G+ ed++n++++akLl
  EGE27436.1 326 IMEDAEQLLPMYLRFVKGVIDTADLPLNVSREILQESRDVKAIREGNARRVLTLLSSLANSEDAdkqqkFADFYQEFGDVLKEGLGEDQTNQERIAKLL 424
                 **********************************************************99776678888****************************** PP

                 EEEETTEEEEEEEHHHHHHHSXTTXXEEEEEEXSSHHHHHTSGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXX.X.XXHHHHHH CS
       HSP90 257 rfksskseeeltsLedYvermkekqksiYyiageskeevekspflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakeglel.e.eeeeekkk 353
                 r+ +s++++  t + dY  rmk++qk+iYy+++++ +++++sp le +kkkg+ev++++  +De +++ l+e++g  l+n+ak  ++l e ++e+ek++
  EGE27436.1 425 RYATSTDDKIATGFGDYKARMKDGQKAIYYLTADNLAAAKNSPQLELFKKKGIEVILMTARVDEWAMNFLHEFDGTPLQNIAKGAVDLgElTDENEKQE 523
                 ****************************************************************************************64678899999 PP

                 HHHHHHHHHHHHHHHHHTTTTTESEEEEXSSXSSXSEEEEBXTTSXXHHHHHHHHHHHHHHHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHHTTTXHHH CS
       HSP90 354 keelkkkfeeltkllkevlkdkvekvkvserlvdsPcvlvtseygwsanmerimkaqalrdkskssymsskktleinprhpiikeLkkkveedkedeea 452
                  ++ ++k++++++ lk++l+++ ++v+vs+rlvdsP++lv +e  ++++m +++ka   +      + + k +leinp+hp+i++L++  + d      
  EGE27436.1 524 AKQAEEKMQPVVEKLKTTLGKRTKDVRVSSRLVDSPACLVVGEGELTPQMAQMLKAMGQS------VPEIKPVLEINPNHPLIDKLQNSHDFD------ 610
                 999**************************************************9997653......4456899*************9876665...... PP

                 HHHHHHHHHHHHHHTTXXXSXHHHHHHHHHHHH CS
       HSP90 453 kdlaellyetallesGfsledpasfakrierll 485
                  dla++++++all+ G +l+dpa + kr+++ll
  EGE27436.1 611 -DLAQVIFDQALLADGGQLDDPAGYLKRVNKLL 642
                 .9****************************997 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   5.9e-15   3.5e-11       4     111 ..      30     183 ..      27     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 5.9e-15
                 HHHHHHHHHHHHHHHHH..........HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT.......GTCS.TTCH.......HCSTCHTSTSSSH. CS
   HATPase_c   4 krLrqiisnlvdNavkf..........atkageieveikaseddlvisveDnGiGipkedlk.......klfe.kfsq.......ddstkrggggtGl. 76 
                 +++r+++sn++d+ +k             ++ge+ ++i+ ++  ++i+ +DnGiG+++ed         k+++ +f +       +d+  +g++g+G+ 
  EGE27436.1  30 IFVRELVSNASDACDKLrflatsddglYENDGELAIRIDIDNTAKTITFSDNGIGMNEEDAIehlgtiaKSGTkAFLDkladsdkKDGHLIGQFGVGFy 128
                 6889999999999999999987765433366688888887678***************99999999999777777777887677777777779****99 PP

                 .HHHHHHH.HHH.H...........TTTEEEE...........EEETTTEEEEEEEEESS CS
   HATPase_c  77 .Glsivkk.lve.l...........mgGeiwv...........esepgrGttftftlple 111
                  G+ +++k +ve +           +     v           + +p+rGt++t++l+ e
  EGE27436.1 129 sGFIVADKiVVEsRkagesadkgvrW-----VsdgtgqfttesIHKPNRGTSITLYLKDE 183
                 9*******999954555554433330.....355555555566677799*******9975 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.4   4.5e-14   2.7e-10       4     101 ..      29     150 ..      25     176 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 4.5e-14
  HATPase_c_3   4 ekAlaelvdNsldAdaen..................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeak......rksts.....lG 71 
                   + + elv N+ dA  +                   + i +++    +++i++ D+G Gm+ee+ ++ l ++a+s ++a       ++  +     +G
   EGE27436.1  29 DIFVRELVSNASDACDKLrflatsddglyendgelaIRIDIDNT---AKTITFSDNGIGMNEEDAIEHLgTIAKSGTKAFldkladSD--KkdghlIG 121
                  56688********9877789999***********8888888885...58**************9999774799998886543333212..134566** PP

  HATPase_c_3  72 kkGiGlklAslslgkkltvitkkegesstl 101
                  ++G+G + +++ +++k+ v+++k ges   
   EGE27436.1 122 QFGVG-FYSGFIVADKIVVESRKAGESADK 150
                  *****.*******************99843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.32s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 4578.47
//
Query:       EGE27437.1  [L=504]
Description: peptidase C13 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-27   94.2   0.0    4.2e-25   88.7   0.0    2.1  2  Peptidase_C13  Peptidase C13 family
  ------ inclusion threshold ------
      0.055   13.4   0.0      0.065   13.2   0.0    1.2  1  Peptidase_C14  Caspase domain
        5.2    7.4  10.2        5.8    7.2   3.2    2.6  2  DUF1430        Protein of unknown function (DUF1430)


Domain annotation for each model (and alignments):
>> Peptidase_C13  Peptidase C13 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0069        41       1      45 [.     250     293 ..     250     314 .. 0.84
   2 !   88.7   0.0   7.1e-29   4.2e-25     101     254 ..     316     466 ..     307     469 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0069
                    EEEEEEE---SGGGHHHHHHHHHHHHHHHC.TT--GGGEEEEE--- CS
  Peptidase_C13   1 lyavlvAGsngydnyrhqadvchayqllkk.kglkdenivvvmydD 45 
                    +y+++ A  +++d++ +++   +a ql++  +++ +++i +++++ 
     EGE27437.1 250 WYFLGAASYSEQDVFASEII--QARQLFDVkFDTAGRSIALINNPS 293
                    5889999999*****99988..******998***********9975 PP

  == domain 2  score: 88.7 bits;  conditional E-value: 7.1e-29
                    ----TTSEEEEEEES-EETT.........EEE-S..SSSEEEHHHHHHHHHHHHHCT--SEEEEEEESTTGGGGTTTS-TTSSEEEEESS-TTS-- CS
  Peptidase_C13 101 lksgkeDnvfiyltdhGapg.........vlevp..eeddleakdLaeaLkkmhakkkykklviyleaceSgsmfeellkdinvyaltAanadess 185
                    l++  eD++f+ l++hG+ +         ++ +p  +  ++++ +L++aL+k++++++    vi+++ac+Sg ++++ lkd  ++++tA++ad+ s
     EGE27437.1 316 LMNPDEDALFLVLSSHGSVDehgepigelAVTNPpmNLRQIDPFWLKSALDKSGIRWR----VIVVSACYSGTFINA-LKDPYTMIITASKADKAS 406
                    67889**************9999*9998877777899*********************....***************.9***************** PP

                    BEECE.CTTTTCEEEEHHHHHHHHHHHHS-TTT-BHHHHHHHHHHHHSSS--EEEE-GGGGGSBTHHHH CS
  Peptidase_C13 186 fgtycedeedgtylgdlfsvawledsddedlsketlekqfelvkkkvakseveeygdaslkqekvskfq 254
                    fg+  +d++d ty+g++f+ + l +sd        + ++f  +  k++++e   ++++s++q+++++ +
     EGE27437.1 407 FGC--TDDADMTYFGRAFFNESLPRSDG-------VMTAFYDALPKIKEREILMGFEPSEPQLVIGEAM 466
                    ***..9**********************.......8899999999*******************99843 PP

>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.065      49     134 ..     286     390 ..     177     466 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                    S..............-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEET...........EEECTTCSSEEEHHHHHHTTSTTTHGGGTTS-EEE CS
  Peptidase_C14  49 d..............ptgknirkalkwlvksadhspgDslvvhysGHGtrvpae.......civpvdvnsliqdddirdlfggdklpslagkpkti 123
                                    t++ i++ l+       + + D+l++++s+HG  v++         +   + ++l q+d ++  +  d  +s+  + ++i
     EGE27437.1 286 IalinnpstwgeypiATRASIERSLEHIG-GLMNPDEDALFLVLSSHGS-VDEHgepigelAVTNPP-MNLRQIDPFWLKSALD--KSGI-RWRVI 375
                    04444566777777789999999999998.4445779************.44445688765444444.9999999999999554..4444.58999 PP

                    EEESES.SSBC...B CS
  Peptidase_C14 124 iidaCr.ggll...d 134
                    ++ aC  g+ +   +
     EGE27437.1 376 VVSACYsGTFInalK 390
                    999999776655551 PP

>> DUF1430  Protein of unknown function (DUF1430)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.6     0.013        78      49      79 ..     100     130 ..      86     147 .. 0.73
   2 ?    7.2   3.2   0.00097       5.8      44      91 ..     161     208 ..     155     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.013
     DUF1430  49 ivllillvlifiltkekiillvvlvllliel 79 
                  ++++ +++i+ +++ +++ll+v ++l++ +
  EGE27437.1 100 PTIIVAAGIIIAQRSLNYALLFVPAILWLAA 130
                 4567788888888889999999999999865 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00097
     DUF1430  44 liiqlivllillvlifiltkekiillvvlvlllielllillvqekiek 91 
                 l+++l+v+   ++l+++ ++ ++  + ++++l+ +++l ++ q++  +
  EGE27437.1 161 LFLLLFVWQTAALLLIFAKRFNWPWYETVLMLIASIVLLVVWQKNTIN 208
                 8999********************************999999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3658.45
//
Query:       EGE27438.1  [L=446]
Description: glutamate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-78  262.7   0.9    4.6e-78  262.3   0.9    1.2  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    9.3e-51  171.1   0.0      2e-50  170.0   0.0    1.6  1  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
    0.00039   19.8   0.0    0.00072   19.0   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    0.00087   19.7   0.0     0.0018   18.7   0.0    1.5  1  NAD_binding_7    Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.029   13.7   0.0      0.066   12.5   0.0    1.5  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
      0.037   14.1   0.0      0.064   13.3   0.0    1.4  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
      0.061   13.4   0.0        6.2    6.9   0.0    2.5  2  Cro              Cro
      0.066   12.8   0.1       0.36   10.4   0.1    2.0  2  AA_kinase        Amino acid kinase family
       0.13   12.4   1.3        7.5    6.8   0.1    2.6  2  KIP1             KIP1-like protein


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.3   0.9   2.3e-81   4.6e-78       1     243 []     198     444 ..     198     444 .. 0.96

  Alignments for each domain:
  == domain 1  score: 262.3 bits;  conditional E-value: 2.3e-81
                    T--TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE...-HHHHHHHHHCSSSSTTHS CS
  ELFV_dehydrog   1 GGsldrpeaTglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGl...dieellelkeerksvkeyk 93 
                    GGsl+r+eaTg+G+vy++++mlk  + d+legk+v +sG Gnv+++aa+++ +lg kv++ sDs+G+++d+eG+   +i+ +++ k++rk +++y 
     EGE27438.1 198 GGSLIRNEATGYGLVYFLDNMLKA-NDDTLEGKTVLVSGAGNVAQHAAEKALHLGGKVITFSDSQGTLHDDEGFtqeKIDWVKAQKDARKPLSDYV 292
                    9***********************.9999*********************************************77777777777888888***** PP

                    HHSTSTSEEESHHSHHHHSS-SEEEE-SSTTSB-HHHHTHTHHTT-SEEE-SSSS-B-HHHHHHHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog  94 kssekkaeyieneeellelkvdilvPcAtqneideenakalikngvklvvEgANlpttqeAkeileeagvlvvpdkaaNaGGVtvSslEmlqnlar 189
                    ++     e++++  +++++ +di++PcAtqne+ e++ak+l+++gvk+vvEgAN+p+  +A++i +++g++++p+kaaNaGGV+vS+lEm+qn+ r
     EGE27438.1 293 EKFG--GEWLPDT-KPWQFAADIALPCATQNEVCEQEAKQLVESGVKYVVEGANMPLDAQAIDIVRSHGITYAPGKAANAGGVAVSGLEMSQNSVR 385
                    7665..59****6.********************************************************************************** PP

                    ----HHHHHHHHHHHHHHHHHHHHHHHHHCT-T.....HHHHHHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog 190 lswteeevdeklkkimkeifkavveeaeeykqe.....lvkganiagfekvaeamkaqG 243
                     + +  e dekl+ imk+i+++++++a+ey+++     +++gan+agf kva+a  a G
     EGE27438.1 386 QYKSFSELDEKLQGIMKNIHDDLLSAAKEYGKTkdvvdYMTGANVAGFLKVANALVAYG 444
                    *******************************9999******************987665 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.0   9.9e-54     2e-50       1     129 [.      53     180 ..      53     181 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.0 bits;  conditional E-value: 9.9e-54
                      -SEEEEEEEEEE-TTSBEEEEEEEEEEEE-TTSSEEEEEEEETT--HHHHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHHHHH CS
  ELFV_dehydrog_N   1 pervlqvtvpvkrdnGelevikgyraqhssalgPakGGiRfhpsvnldevkaLaalmtyKnalvdlpfGGakggvkidpkklseeeleritrrf 94 
                      p+r+++++v++++d+G++e+++g+r+q+s+a+gP+kGG+Rfhp+vn++ +k+L++++++Knal++lp+GG+kgg+++dpk++s++e++r++ +f
       EGE27438.1  53 PDRIISFRVNWENDQGKVEINRGWRVQFSNAIGPYKGGLRFHPTVNESVLKFLGFEQIFKNALTGLPMGGGKGGSDFDPKGKSDAEIRRFCYAF 146
                      789******************************************************************************************* PP

                      HHHHG.GG-BTTTEEEEBBTTB-HHHHHHHHHHHH CS
  ELFV_dehydrog_N  95 vrelakkfiGpgiDvpApDvgtgaremawladeyk 129
                      +rel+ k iG+++DvpA D+g+g+re+++++  yk
       EGE27438.1 147 MRELH-KNIGKDMDVPAGDIGVGSREVNYMFAMYK 180
                      *****.999***********************998 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.6e-07   0.00072      32      86 ..     224     276 ..     210     284 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.6e-07
                   S-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHH CS
  2-Hacid_dh_C  32 kelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsle 86 
                    +l+gktv + G+G+++q++a+++  +g kvi ++ s+ + +  +++g++ ++++
    EGE27438.1 224 DTLEGKTVLVSGAGNVAQHAAEKALHLGGKVITFSDSQGTLH--DDEGFTQEKID 276
                   579*******************************99976444..55566666665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     9e-07    0.0018       5      76 ..     226     324 ..     225     348 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9e-07
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapev......keeleelvklaeee...........lekdleg...............adlviaa 68 
                    l+gk+vlv G+G+vA++ ++k l  g kv+  +         + +++e++++ + +                 +               ad+++ +
     EGE27438.1 226 LEGKTVLVSGAGNVAQHAAEKALHLGGKVITFSDSQgtlhddEGFTQEKIDWVKAQkdarkplsdyvE-----KfggewlpdtkpwqfaADIALPC 316
                    799*****************************999866666655666777775332222333333220.....23333333334433335555555 PP

  NAD_binding_7  69 tddrelne 76 
                     +++e+ e
     EGE27438.1 317 ATQNEVCE 324
                    55555544 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.3e-05     0.066      30      83 ..     230     283 ..     223     295 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.3e-05
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqee 83 
                  +vlv G+G + ++A++ a  lg kV  +  ++ +l+  e + ++ ++ +k+q++
   EGE27438.1 230 TVLVSGAGNVAQHAAEKALHLGGKVITFSDSQGTLHDDEGFTQEKIDWVKAQKD 283
                  699***********************9999999999999888887888777765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.2e-05     0.064      10      52 ..     215     256 ..     209     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.2e-05
                    CHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE CS
  AdoHcyase_NAD  10 vdgikratdvllaGkvavvaGyGdvGkGcaaslkglGarvivt 52 
                    +d + +a d  l Gk+++v G G+v + +a+   +lG +vi t
     EGE27438.1 215 LDNMLKANDDTLEGKTVLVSGAGNVAQHAAEKALHLGGKVI-T 256
                    799999*************************9999999986.4 PP

>> Cro  Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0031       6.2      23      53 ..     238     268 ..     233     269 .. 0.92
   2 ?    3.6   0.0     0.034        68       3      14 ..     285     296 ..     283     299 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0031
                 TS-HHHHHHHHHCT-EEEEEEETTSEEEEEE CS
         Cro  23 gvkqsaIsKAlkakRnIylivdedGsveaeE 53 
                 +v+q a  KAl+ + ++  + d++G+ + +E
  EGE27438.1 238 NVAQHAAEKALHLGGKVITFSDSQGTLHDDE 268
                 79***********************988766 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.034
                 EEEHHHHHHHHH CS
         Cro   3 risLsdyvtkvG 14 
                 r +Lsdyv+k+G
  EGE27438.1 285 RKPLSDYVEKFG 296
                 789********9 PP

>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00018      0.36       6      63 ..     196     254 ..     195     287 .. 0.73
   2 ?   -0.1   0.0       0.3   5.9e+02       5      44 ..     293     343 ..     290     414 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
                 EE-TTCCCCTCC.....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC CS
   AA_kinase   6 KlGGssltdkee.....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgela 63 
                  +GGs++ ++ +      +l+++++   +   +  k v+V+G+g+++ + +++   l+ g++ 
  EGE27438.1 196 GFGGSLIRNEATgyglvYFLDNMLKANDDT-LE-GKTVLVSGAGNVAQHAAEK--ALHLGGKV 254
                 69******8888787766666666655555.44.577**************99..55554444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.3
                 EEE-TTCCCCTCC...........HHHHHHHHH.HHHHHHHTTEEEEEE--H CS
   AA_kinase   5 vKlGGssltdkee...........aslrrlaeq.iaalkesgnklvvVhGgg 44 
                  K+GG  l d++            a  ++++eq  ++l+esg k  vV G++
  EGE27438.1 293 EKFGGEWLPDTKPwqfaadialpcATQNEVCEQeAKQLVESGVK-YVVEGAN 343
                 56666666655555444444444444444444312333444444.4444443 PP

>> KIP1  KIP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.033        65      40      63 ..       5      28 ..       3      36 .. 0.88
   2 ?    6.8   0.1    0.0037       7.5      18      44 ..     388     414 ..     378     422 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.033
        KIP1 40 sfakraemyykkrpeLielveefy 63
                s  k+ e +y ++pe i+ v+e+ 
  EGE27438.1  5 SVVKKIEKNYAHQPEFIQAVQEVA 28
                67899***************9975 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0037
        KIP1  18 etlseldekvkemlklieedadsfakr 44 
                 +  seldek++ ++k i++d  s ak+
  EGE27438.1 388 KSFSELDEKLQGIMKNIHDDLLSAAKE 414
                 5689*************9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3472.65
//
Query:       EGE27439.1  [L=372]
Description: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-26   90.9   1.3    4.4e-26   90.9   1.3    1.8  2  ADH_N           Alcohol dehydrogenase GroES-like domain
    6.4e-26   90.9   0.3    1.1e-25   90.1   0.3    1.4  1  ADH_zinc_N      Zinc-binding dehydrogenase
    0.00033   20.2   0.0      0.002   17.7   0.0    2.0  1  Glu_dehyd_C     Glucose dehydrogenase C-terminus
     0.0011   20.0   0.0     0.0029   18.7   0.0    1.7  1  ADH_zinc_N_2    Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.018   14.6   0.2      0.028   14.0   0.2    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
        0.1   11.9   0.2       0.26   10.6   0.1    1.6  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   1.3   1.5e-29   4.4e-26       2     108 ..      31     157 ..      30     158 .. 0.88
   2 ?   -3.4   0.1       3.1   9.2e+03      50      61 ..     184     195 ..     173     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 1.5e-29
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-................... CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC................... 81 
                 gevl+++ a+g+C++D  +l+g +++e  +p++lGHE +G+ve+vg++v++++vGd+V+   + +cg+C+ C ++++nlC                   
  EGE27439.1  31 GEVLVRIVATGVCHTDAYTLSG-ADPEGIFPCVLGHEGAGIVEAVGEGVTDFAVGDHVIPLYTAECGQCKMCLSNKTNLCsavretqgkglmpdgtvrf 128
                 79********************.8********************************************************9999999999998888888 PP

                 .....TTBEETTTSS-SSSBSEEEECGGGEEE CS
       ADH_N  82 .....eeakllgvsldGgfaeyvvvpekklvk 108
                      + ++++g+s   +f+ey+vv++ +l+k
  EGE27439.1 129 fkegePIYHYMGTS---TFSEYTVVSQYSLAK 157
                 76443333444444...899999999888776 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.1
                 -CS--TT-EEEE CS
       ADH_N  50 vkklkvGdrVvv 61 
                 + k+k Gd V++
  EGE27439.1 184 TAKVKPGDTVAI 195
                 456899999987 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.3   3.7e-29   1.1e-25       1     118 [.     200     321 ..     200     335 .. 0.89

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 3.7e-29
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTC.H.HHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEE.EEEEECSCTSSEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykea.d.lverikeltggegvdvvfecvGsgatleaalkllkpg.GrlvvvGggkgee 95 
                 g+Glaav  A+++Ga ++i+vd++e+k+++a++lGa+ ++n+++  + +++ i e+t ++gvd++fec+G+ ++++aal+++++g G  v++G+   + 
  EGE27439.1 200 GIGLAAVIGARMAGAgRIIVVDINEDKFAKAQELGATDCVNPNKFdKpIQQVIIEMT-DGGVDFSFECIGNVDVMRAALECCHKGwGESVIIGVAPAGA 297
                 8*****************************************66644699999****.55**********************************55556 PP

                 EEEHHHHH.HTT-EEEEE-SSCHH CS
  ADH_zinc_N  96 efdlrnll.lkeksilGsllgslr 118
                 e+++r++   + +  +Gs +g+++
  EGE27439.1 298 EISTRPFQlVTGRVWRGSAFGDVK 321
                 699999554999999*****9954 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.6e-07     0.002      29     212 .]     187     372 .]     177     372 .] 0.74

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.6e-07
  Glu_dehyd_C  29 wep.esalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYv...dsretpvdei..peaseemdlvvEaTGsakhafeaiea 120
                   +p +++ + G G +GL a  ++ a+  g  r+ v++ ++ +  +    +elGat     ++  +p++++    ++  +d+ +E+ G+  ++ +a+e 
   EGE27439.1 187 VKPgDTVAIFGLGGIGLAA--VIGARMAGAGRIIVVDINEDKFAK---AQELGATDCvnpNKFDKPIQQViiEMTDGGVDFSFECIGNVDVMRAALEC 279
                  55536889*********99..5555668999******86665555...5889988642224556899986224566789*****************98 PP

  Glu_dehyd_C 121 lap.nGvaaLlGvpeds.evevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldeleeAfe..dddetiKtvvel 212
                       G  +++Gv     e++ +  +l +  v +  a +G v  + +      + ++   +  l++++t+ ++ld++++Af+  ++ ++i++v+++
   EGE27439.1 280 CHKgWGESVIIGVAPAGaEISTRPFQLVTGRVWRGSA-FGDVKGRSELPGIVSQYMQ--GDFALSDFITHTMPLDQINAAFDlmHEGKSIRSVIHF 372
                  8652699******865438999999999988888776.6888876654443333333..2344999***************833445789999876 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   9.6e-07    0.0029       2     127 ..     234     365 ..     233     366 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9.6e-07
                   T-SEEE.....ETTSTTHH.HHH-TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHH CS
  ADH_zinc_N_2   2 GAdevi.....dyrtedfe.aatggegvDvvldtvggealleaslkvl.pggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadile 91 
                   GA+ ++     d   +++  + t  +gvD  ++++g+ + ++a+l+++ +g G  v ig  p+ a+++ ++++  +++v     f     +++ +l 
    EGE27439.1 234 GATDCVnpnkfDKPIQQVIiEMT-DGGVDFSFECIGNVDVMRAALECChKGWGESVIIGVAPAGAEISTRPFQLVTGRVWRGSAFG-DV-KGRSELP 327
                   66666643332333233335667.467*********99999*******8888**99999555666677777766666665555553.33.36667*9 PP

                   HHHHHHHHHH..----EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2  92 elaalieeGk..lrpvvdrvfpleeaaeAhrylesgra 127
                    ++  + +G   l   +++++pl++++ A++++++g+ 
    EGE27439.1 328 GIVSQYMQGDfaLSDFITHTMPLDQINAAFDLMHEGKS 365
                   9*99999999668889******************9985 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   9.3e-06     0.028       2      40 ..     192     231 ..     191     252 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.3e-06
                     EEEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHHC CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeig.hevigvDideekvdkln 40 
                     +++++GlG +Gl   +    +g   +i+vDi+e k +k +
      EGE27439.1 192 TVAIFGLGGIGLAAVIGARMAGaGRIIVVDINEDKFAKAQ 231
                     699********9766555555544799*******998866 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   8.7e-05      0.26      36      80 ..     190     235 ..     181     252 .. 0.85
   2 ?   -2.8   0.0       1.1   3.3e+03      89     103 ..     338     352 ..     329     356 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.7e-05
                   TSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgv 80 
                   g tv+i+GlG IG a+   ++  g+ ++i++d +++k ++++elg+
    EGE27439.1 190 GDTVAIFGLGGIGLAAVIGARMAGAgRIIVVDINEDKFAKAQELGA 235
                   78**************99999999889******9887777777766 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.1
                   HHH-SEEEE-S--ST CS
  2-Hacid_dh_C  89 laesDivslhlpltp 103
                   +a sD+++ ++pl +
    EGE27439.1 338 FALSDFITHTMPLDQ 352
                   5679*******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2751.21
//
Query:       EGE27440.1  [L=268]
Description: S-formylglutathione hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-58  198.0   0.0    2.3e-58  197.8   0.0    1.0  1  Esterase         Putative esterase
    6.2e-06   25.7   0.0    3.2e-05   23.3   0.0    1.9  2  Hydrolase_4      Serine aminopeptidase, S33
    1.7e-05   24.4   0.0      3e-05   23.6   0.0    1.4  1  Peptidase_S9     Prolyl oligopeptidase family
     0.0029   17.2   0.1     0.0084   15.7   0.1    1.7  1  DLH              Dienelactone hydrolase family
     0.0095   15.4   0.0      0.048   13.1   0.0    1.9  1  Esterase_phd     Esterase PHB depolymerase
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.025   13.6   0.0    1.6  1  Chlorophyllase   Chlorophyllase
      0.022   13.7   0.0      0.031   13.2   0.0    1.3  1  Chlorophyllase2  Chlorophyllase enzyme
      0.058   13.0   0.0      0.096   12.3   0.0    1.3  1  Abhydrolase_1    alpha/beta hydrolase fold
        0.1   13.1   0.0       0.13   12.9   0.0    1.3  1  Abhydrolase_6    Alpha/beta hydrolase family
       0.14   12.1   0.0       0.22   11.4   0.0    1.3  1  Lipase_3         Lipase (class 3)


Domain annotation for each model (and alignments):
>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   0.0   1.3e-61   2.3e-58       1     250 [.      13     260 ..      13     261 .. 0.98

  Alignments for each domain:
  == domain 1  score: 197.8 bits;  conditional E-value: 1.3e-61
                 ETTTTEEEEEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSB..B.TTEEETTCCCCCCHC.. CS
    Esterase   1 SealgreikvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlg..arfyenategpgaeaye.. 95 
                 S+a ++e++++vyLP++  +g  +pv+y+l+Glt++d+nf++k++ +++a++++i  vi++++prg+++++++ +dlg  a+fy+nat+ p++ +y+  
  EGE27440.1  13 SKAVQSEMTFAVYLPKQALKGACLPVLYYLSGLTCNDENFSTKSGAQQYAAKYGIILVIPDTSPRGETVPDDEAYDLGqgAGFYVNATASPWSVHYQmy 111
                 78999************99999***************************************************************************** PP

                 HHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHC........TTCCHHHCC-CCCCHCHHCHTTSEEEE CS
    Esterase  96 tfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgq........eekeawqendpvllakelsaslkalri 186
                 +++ +eL+ l+++nf++ ++  a+ G+SmGG+gAL ++lk+pd ++s+s+f+pivnps+ +Wgq        e+++ w e+d++ l+   ++  ka  i
  EGE27440.1 112 DYIVDELPRLIEKNFNVGQK--AICGHSMGGHGALQIGLKNPDAYASISAFAPIVNPSKTPWGQkaftaylgEKESDWCEYDSTYLV---AKATKAPPI 205
                 *******************9..**************************************************9999***********...7899999** PP

                 EEEECTTBCCCHTSCHHHHHHHHHHHCCHHHHCCCCCCTT-SCCCC--SSHHHHHHHHHHCHHH CS
    Esterase 187 yldvGtseddlgeqlsveilevlarnrelkeqlaargvegedheydGghsweyWraqLiaalad 250
                  +d+G  +d++ +ql++e +  +a++  +   ++ + ++g+dh+y        ++a++i+ +++
  EGE27440.1 206 RIDQGLADDFYPNQLQPEQFVAAAQENGIN--VELNLHDGYDHSYF-------FVASFIEVHIK 260
                 *****************************9..*************9.......99999998886 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.8e-08   3.2e-05      65     131 ..     121     181 ..      99     213 .. 0.80
   2 ?    0.2   0.0       0.2   3.6e+02     192     235 ..     203     249 ..     191     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.8e-08
  Hydrolase_4  65 fvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllklllkllg 131
                  +   ++++ +  +  ++GhSmGG  al+++l++pd +a +  +aP +++ +   +p+ +k++   lg
   EGE27440.1 121 L---IEKNFNVGQKAICGHSMGGHGALQIGLKNPDAYASISAFAPIVNPSK---TPWGQKAFTAYLG 181
                  3...34444445778********************************9984...6888887766665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.2
  Hydrolase_4 192 lPllllhGeaDkvvdpeas.relyerlgsk..dktlklypglyHell 235
                   P+ + +G aD   +++ + ++++++++ +  +++l+l +g  H+ +
   EGE27440.1 203 PPIRIDQGLADDFYPNQLQpEQFVAAAQENgiNVELNLHDGYDHSYF 249
                  47888999999999999999999999999888999999999999866 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.7e-08     3e-05      67     187 ..     132     247 ..     118     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.7e-08
                   EEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-TH.HH CS
  Peptidase_S9  67 aitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppa.ea 162
                   ai G+S GG  ++ +  ++pd ++ + a +p+v+  ++   ++++t+ y +  ++  +  +y+    ++++   ++ pp+ + +GlaDd  p + ++
    EGE27440.1 132 AICGHSMGGHGALQIGLKNPDAYASISAFAPIVNPSKTPWGQKAFTA-YLGEKES--DWCEYDSTYLVAKA---TKAPPIRIDQGLADDFYPNQlQP 222
                   899**************************************988999.5553333..23334333333333...459************9998549* PP

                   HHHHHHHH--S-SEEEEEETTS-SS CS
  Peptidase_S9 163 lklvaaLqkkgknvlllifpdegHg 187
                   +++vaa q++g nv+l    + +H+
    EGE27440.1 223 EQFVAAAQENGINVELNLHDGYDHS 247
                   *****************99999996 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.7e-06    0.0084      95     190 ..     126     249 ..     104     257 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.7e-06
         DLH  95 vstkkvgvvGfCmGGalalllaaevpevdaavafYG..........................lspekeleeaakika.pilalfgeeDefipade.vek 165
                 +++++ +++G  mGG  al++  ++p + a+++ +                            + +++   a+  ka pi +  g +D f p++   e+
  EGE27440.1 126 FNVGQKAICGHSMGGHGALQIGLKNPDAYASISAFApivnpsktpwgqkaftaylgekesdwCEYDSTYLVAKATKApPIRIDQGLADDFYPNQLqPEQ 224
                 45566789*****************99*****99999**********************9997777777777777763699**********99964789 PP

         DLH 166 leealkaanvdlelkvYpgagHaFa 190
                 +  a +++++++el++++g +H+++
  EGE27440.1 225 FVAAAQENGINVELNLHDGYDHSYF 249
                 ***********************76 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.7e-05     0.048       2     125 ..      21     157 ..      20     167 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-05
  Esterase_phd   2 ayrlylppGarrga.mplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqslranaqkcwnwykdtdraGrGeaa......vvvalvdalvde 91 
                   ++ +ylp  a +ga +p++  l G t + e+f++ +  +  a k+G++++ p+ s r ++    + y+  + aG    a      v   + d +vde
    EGE27440.1  21 TFAVYLPKQALKGAcLPVLYYLSGLTCNDENFSTKSGAQQYAAKYGIILVIPDTSPRGETVPDDEAYDLGQGAGFYVNAtaspwsVHYQMYDYIVDE 117
                   5789****99998757***************************************999887777777666666543222001111223445555553 PP

  Esterase_phd  92 ......hrvdaarvyvaGlsaGaaladllalhypdvfaav 125
                         ++++  +  + G s G+  a  ++l+ pd +a++
    EGE27440.1 118 lprlieKNFNVGQKAICGHSMGGHGALQIGLKNPDAYASI 157
                   2222224566666666666666666666666666666665 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.4e-05     0.025      45     142 ..      35     151 ..      13     169 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
  Chlorophyllase  45 typvvlflhGtllsnkfysk...llnhiashGfivvaPqly...kllpPsaqde........idsaa...evieWlseglkavlptsvea..nls 120
                       pv+ +l G + +++++s+     ++ a +G i+v P      + +p ++  +        ++ +a   +v   +  ++   lp  +e   n+ 
      EGE27440.1  35 CLPVLYYLSGLTCNDENFSTksgAQQYAAKYGIILVIPDTSprgETVPDDEAYDlgqgagfyVNATAspwSVHYQMYDYIVDELPRLIEKnfNVG 129
                     46999999999999998875233679999999999999876332566655555511111111344442223444466677888997666511677 PP

  Chlorophyllase 121 klalvGhsrGGktafalalgys 142
                     + a+ Ghs GG+ a+ + l+  
      EGE27440.1 130 QKAICGHSMGGHGALQIGLKNP 151
                     89**************999543 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05     0.031      16     122 ..      35     161 ..      17     178 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
  Chlorophyllase2  16 eYpvllflhGylllnslYsq...lLkhiashgfivvap..................qlykvaeada.keiksaakvlnWlakgLesvlpeevep 87 
                        pvl +l G++++ + +s+     +  a +g i+v p                  q   +  + + +  +   ++ +++ ++L + ++++   
       EGE27440.1  35 CLPVLYYLSGLTCNDENFSTksgAQQYAAKYGIILVIPdtsprgetvpddeaydlgQGAGFYVNATaSPWSVHYQMYDYIVDELPRLIEKNF-- 126
                      46888888888888777765222567788888888888888888888888777666444433333336666677788888888888887776.. PP

  Chlorophyllase2  88 dlsklalsgHSrGgktafalalgkaktslkfsali 122
                      ++ + a+ gHS Gg+ a+++ l++ ++  ++sa  
       EGE27440.1 127 NVGQKAICGHSMGGHGALQIGLKNPDAYASISAFA 161
                      467889******************99888888865 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.4e-05     0.096      45     106 ..     101     162 ..      95     176 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.4e-05
                    STTTGB.CHHSHHHHHHHHH....HHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE CS
  Abhydrolase_1  45 papacinddygtasvaddld....rildalgddkltlvGhSmGGmialayaaeyperVkalvllga 106
                    ++p++  ++y++ ++  ++d     i   +++++ ++ GhSmGG  al+  +++p+  +++ + ++
     EGE27440.1 101 ASPWS--VHYQMYDY--IVDelprLIEKNFNVGQKAICGHSMGGHGALQIGLKNPDAYASISAFAP 162
                    56676..45555332..2222242558999************************997777666665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.2e-05      0.13      31      99 ..      86     168 ..      58     250 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.2e-05
                    EE--TTST.........S-GGCS--HHH..CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC............EEEEES-..-- CS
  Abhydrolase_6  31 apDlpGhG.........rsdpppldled..ladlaalldelaagggpvvlvGHSlGGalalaaapla..........lvvgvlldpppta 99 
                    a+Dl G+G         ++++ ++   d  +++l +l+++   + g+  + GHS+GG+ al+                 ++ +++p    
     EGE27440.1  86 AYDL-GQGagfyvnataSPWSVHYQMYDyiVDELPRLIEKNF-NVGQKAICGHSMGGHGALQ---IGlknpdayasiSAFAPIVNP--SK 168
                    7899.9987788877666677777776643355555555554.5666689******995555...112222222211113355555..33 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.22      44      79 ..     100     143 ..      58     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                 H.......S-HHHHHHHHHHHHHHHTT-.EEEEEEEETHHHHHH CS
    Lipase_3  44 e.......eslreqvlkelkrllekype.ysivvtGHSLGgalA 79 
                 +        ++++ + +el rl+ek+ +  + +++GHS+Gg  A
  EGE27440.1 100 TaspwsvhYQMYDYIVDELPRLIEKNFNvGQKAICGHSMGGHGA 143
                 344444546799999***********9856899*******9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2083.99
//
Query:       EGE27441.1  [L=284]
Description: hypothetical protein EA1_02222 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-42  145.9  24.0    1.7e-42  145.6  24.0    1.0  1  DsbD_2           Cytochrome C biogenesis protein transmembran
  ------ inclusion threshold ------
        0.4    9.8  15.9        3.1    6.8  15.9    2.1  1  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6  24.0   1.9e-46   1.7e-42       1     198 [.       8     216 ..       8     217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 145.6 bits;  conditional E-value: 1.9e-46
      DsbD_2   1 aafllgLlgslhClgmCggivlalslskp.....kralalllynlGRilsYallGalvgllgsvlqlageleglrallgvllgllllllglklllkkkl 94 
                 aaf +gLlgs hClgmCggiv+a+  s++     kr+l +l y++GR+ sY++lG+lv++lg+ + +   l + +al + llg +l++ +l +l+ + l
  EGE27441.1   8 AAFSMGLLGSPHCLGMCGGIVAAFGISMKntspaKRTLLMLGYHMGRLGSYTILGLLVAALGKHILA--PLMANSALPKYLLGGALVFAALLMLGLPVL 104
                 69**********************887753334467789*************************955..456789************************ PP

      DsbD_2  95 lklerlgkllsrllkklakkl...kslasalllGllnGllpCglvysalllalasgs....aleGalvmlaFgLGTlpalllfglllgllskklrkkll 186
                 ++le++g +++++l +l +k+   +sl++al++Gll+G+lpCglvy al +al  +s     l+   +m++F+LGTlp+ll++g+++++l++k+++  l
  EGE27441.1 105 NRLEKAGLRFWNTLAPLRAKVlpmDSLPKALIAGLLWGFLPCGLVYGALGVALGLASdsqvGLTATTFMVFFWLGTLPMLLATGTVIAWLKSKIHAFNL 203
                 ********************9*****************************999654411224567889***************************8666 PP

      DsbD_2 187 r.lagvllillgl 198
                 r ++gv++++ gl
  EGE27441.1 204 RkFSGVVMLISGL 216
                 66*******9997 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  15.9   0.00034       3.1     221     289 ..      95     191 ..       2     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00034
  ABC2_membrane_3 221 lllilllafgl............................gipfgnlglllllfllfglayialgyllsslfkns..etaqilifivil..llsg 282
                      +l    l++gl                            ++p   +  ll+ fl+ gl+y alg +l+ +++++   ta +++++++l  l+++
       EGE27441.1  95 AL----LMLGLpvlnrlekaglrfwntlaplrakvlpmdSLPKALIAGLLWGFLPCGLVYGALGVALGLASDSQvgLTATTFMVFFWLgtLPML 184
                      12....23444666669999999999999999995554444444556688************************88889999*****9887777 PP

  ABC2_membrane_3 283 ffgglfp 289
                      + +g+++
       EGE27441.1 185 LATGTVI 191
                      7766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2058.56
//
Query:       EGE27442.1  [L=91]
Description: cbb3-type cytochrome oxidase maturation protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-15   56.7   1.2    2.3e-15   56.0   1.2    1.3  1  FixS             Cytochrome oxidase maturation protein cbb3-t
  ------ inclusion threshold ------
      0.018   15.1   0.1       0.02   14.9   0.1    1.2  1  Adipogenin       Adipogenin
      0.022   14.8   0.2      0.033   14.2   0.2    1.3  1  PspB             Phage shock protein B
       0.54   10.7   3.8        2.2    8.7   0.5    2.2  2  FeoB_associated  FeoB-associated Cys-rich membrane protein


Domain annotation for each model (and alignments):
>> FixS  Cytochrome oxidase maturation protein cbb3-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   1.2     5e-19   2.3e-15       2      44 .]      34      76 ..      34      76 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 5e-19
        FixS  2 iLylLiplSlllgllalaaFlWavksGQFDDlegpaeriLfDd 44
                ++ylLiplSl+l ++a++a  +avks+QF+Dl+ ++e i+ Dd
  EGE27442.1 34 SIYLLIPLSLMLFVIAIWAIYYAVKSNQFEDLDNASEQIILDD 76
                59****************************************9 PP

>> Adipogenin  Adipogenin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   4.4e-06      0.02      10      47 ..      26      63 ..      16      82 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.4e-06
  Adipogenin 10 ndltlsflvfwlclpvalllfllivwlrfllsqdseen 47
                  l  ++l ++l +p++l+lf++ +w  +   +  + +
  EGE27442.1 26 YKLRHAMLSIYLLIPLSLMLFVIAIWAIYYAVKSNQFE 63
                467789999*****************877665554444 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   7.4e-06     0.033       4      58 ..      36      87 ..      32      89 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.4e-06
        PspB  4 flavpliifvlfVapiWLiLHYrskkkrskglsaedekrLeellekAekleeRie 58
                +l++pl  ++lfV+ iW  ++Y  k+++ + l++  e+ + +  ++A++ ++Ri+
  EGE27442.1 36 YLLIPLS-LMLFVIAIWA-IYYAVKSNQFEDLDNASEQIILD-DRQARRKTKRIH 87
                5667766.5899999**6.59***********9987777654.467777777775 PP

>> FeoB_associated  FeoB-associated Cys-rich membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2      0.04   1.8e+02       8      22 ..      16      30 ..      15      32 .. 0.85
   2 ?    8.7   0.5    0.0005       2.2       7      23 ..      43      59 ..      41      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.04
  FeoB_associated  8 iiaaavafvirrlik 22
                     ii a++++ +++l+ 
       EGE27442.1 16 IIYAIMGLTFYKLRH 30
                     6779*******9975 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0005
  FeoB_associated  7 liiaaavafvirrlikk 23
                     l+++++++++i++ +k+
       EGE27442.1 43 LMLFVIAIWAIYYAVKS 59
                     7899***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1091  (0.0608511); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 644.52
//
Query:       EGE27443.1  [L=498]
Description: hypothetical protein EA1_02232 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.8e-113  378.8   2.2   4.3e-113  378.6   2.2    1.0  1  UPF0061   Uncharacterized ACR, YdiU/UPF0061 family
  ------ inclusion threshold ------
      0.036   14.2   0.2       0.11   12.6   0.1    1.9  2  DUF5641   Family of unknown function (DUF5641)


Domain annotation for each model (and alignments):
>> UPF0061  Uncharacterized ACR, YdiU/UPF0061 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.6   2.2  4.8e-117  4.3e-113      13     464 ..       9     465 ..       1     469 [. 0.90

  Alignments for each domain:
  == domain 1  score: 378.6 bits;  conditional E-value: 4.8e-117
     UPF0061  13 slgsdfydeveaaefpkkilrvrndalleelgldeeevkdeelieifgke.........kgiepflalrYhGyQFGeynpqLGDGRgfllgqvrdkd.g 101
                 ++ ++ y ++ ++ +++ +l+  n +l ++lgl+  +++ + +++i+++          ++i+p  a++Y+G+QFG++++qLGDGRg+l +q+++k+ g
  EGE27443.1   9 KHDERLYRHTLPTPLDNPKLVSLNAQLIDQLGLS--SLDATAWTDIISGRlspltqiapHKIQPI-AMAYAGHQFGQWAGQLGDGRGVLIAQLHNKKtG 104
                 566778888889999******************9..8889999*****999*******999***9.***************************99877* PP

     UPF0061 102 elydfglKGsGlTPySRsaDGrlvLksgvREvlasealhklgvrtsralslietgekllRedePspersavvvRlarshiRfGtferlkylkrldllkk 200
                 +l d++lKG+GlT ySR +DGr++L s +RE+l + al+ l + +s a+ l+ +++++ R+     e++a ++R++  h+R+G+fe   +   +d  ++
  EGE27443.1 105 KLIDLHLKGAGLTSYSRRGDGRAMLASCIREYLGGHALNGLMIASSDAIGLVVSDTHIQRR---HIEKAAALLRVSDCHVRLGHFEWVAM-YAADYFET 199
                 *************************************************************...9*********************7765.56899*** PP

     UPF0061 201 Lldyvieeyypeladee...ekyaqfyaelvervAelvAqWmaaGFchgVlNTDNmsilGeslDYGPyaFldkydpkftaayfDyagrYsyanQpsiil 296
                  +  +i++yy +l d++    +++q+ +e+   +A+++A+W+ +GFchgV+NTDN+ i+G +lD+GP+aF++ ++p+++ +++D++grY y+nQp+i +
  EGE27443.1 200 FVIKIIQSYYLHLYDTHqntANISQLLHEIAANTARMIAKWQLIGFCHGVMNTDNLNITGTTLDFGPFAFMEGFNPTWINNHSDHTGRYVYQNQPTIGH 298
                 *************666533478899************************************************************************** PP

     UPF0061 297 wNLeqlaeplallieaeeleealeeykevyttkYaqlmlkkLGleklsekekefdselleellelLqetqvdYneffveLaeskskkwr....deaesi 391
                 wNL+ + + ++ l++++++++al +y+ev++++Y++ + +kLG++  +    + + +l  +ll l+q++++dY+++f++L +  ++  +    +++ ++
  EGE27443.1 299 WNLAVVYHHFKRLVNQDDIDDALMTYQEVFENTYHHGLCQKLGIKPSH----Q-AIQLGYRLLMLMQNERLDYTNTFRALIAVADHGENrtqfTHEYTL 392
                 ********************************************3322....2.3578999*******************9887665432222333334 PP

     UPF0061 392 leese...keleeekleeWrelYkklleeleedeleeraerlkkvNpktvllrplieeviekiaeeddlsplkkll 464
                 l++ +   ++++ + +++W + Y ++l+++  +++++  ++l+++Np ++l++ ++e++i + a++ d++++ +l+
  EGE27443.1 393 LANLTnilSATSYDIWQNWVNDYLDCLKQQ--STKQTAIKTLQQTNPIYILRNHMAERAIVS-AHQGDFDEVARLF 465
                 444445555566699*************65..567788899*******************99.9999999998886 PP

>> DUF5641  Family of unknown function (DUF5641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.4   1.2e+04      52      64 ..     295     307 ..     289     310 .. 0.70
   2 ?   12.6   0.1   1.2e-05      0.11       9      48 ..     403     443 ..     397     464 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.4
     DUF5641  52 prlkWplgrviev 64 
                 +  +W+l+ v + 
  EGE27443.1 295 TIGHWNLAVVYHH 307
                 5579999999765 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.2e-05
     DUF5641   9 laqefWkrwskeYLsqLqqrkkwtkkkrnlkv.gdlVlvke 48 
                 +  ++W+ w ++YL  L+q++ +++  ++l++ + + ++++
  EGE27443.1 403 TSYDIWQNWVNDYLDCLKQQSTKQTAIKTLQQtNPIYILRN 443
                 56689************999999888888765144445444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3795.13
//
Query:       EGE27444.1  [L=392]
Description: delta-9 acyl-phospholipid desaturase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-19   69.4  21.4    4.3e-19   69.4  21.4    2.0  2  FA_desaturase   Fatty acid desaturase
  ------ inclusion threshold ------
      0.045   13.6   6.9      0.069   13.0   6.9    1.2  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.087   12.8   3.3       0.13   12.2   3.3    1.2  1  MIP-T3_C        Microtubule-binding protein MIP-T3 C-terminal
        1.4    9.2   6.2        1.9    8.8   6.2    1.2  1  DUF737          Protein of unknown function (DUF737)


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   7.2     0.021        94     133     175 ..      15      58 ..       2      62 .. 0.68
   2 !   69.4  21.4   9.5e-23   4.3e-19       3     239 ..      48     267 ..      45     278 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.021
  FA_desaturase 133 rk...wrllawlllllawlglwlalllllglalllwlvplllllfl 175
                     +   +++l+  l+l++ ++ w+++ +  g++  +w+++++l++++
     EGE27444.1  15 INwvpAIVLLSTLFLAITIVPWYLWTHGVGMG--VWVAFAILMAWT 58 
                    44333556666777777777777777777777..9**999999986 PP

  == domain 2  score: 69.4 bits;  conditional E-value: 9.5e-23
  FA_desaturase   3 wlalllalllglf.llgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHaytngpdeDpdlaplalsrfeglfryll 97 
                    w+a+    +l+++  l+it+++++ ++H ++  ++++ +++  llg  + l++ +s + w+  H++HH+++ ++ +Dp+      s+++g++  ++
     EGE27444.1  48 WVAF---AILMAWtGLSITAGYHRLWSHKSYE-AHPVVKYI-LLLG--ATLAVESSVFDWCSGHRSHHRHVDDEYDDPY------SSRRGFWFSHM 130
                    3333...4455544678889********8777.78888888.3443..66777789**************88888****......7899999999* PP

  FA_desaturase  98 rlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvlnyveHyggdwger 193
                    +++l+ +  g     + +  + +l++ +  + + +++  ++ +  +++ ++++w+    l+      +lv+ ll l+l++ + ++++   + +g+r
     EGE27444.1 131 GWMLRKYPSG----QYDYKNIPDLKKDKLLALQHKYYGFWVIATNVVILAMIGWITGDMLG-----TFLVAGLLRLVLTHHFTFFINSLCHMFGTR 217
                    *****99999....33334777777777777777666666666666555555555555544.....444444444444444434444444455*** PP

  FA_desaturase 194 qvetsasirsaswllnlltgnlnyHieHHlfP.....gvpwyrLpelhrrl 239
                    ++ + +++r ++ ll+++t++ +yH+ HH+f      gv w++++  ++++
     EGE27444.1 218 PYTDENTAR-DNGLLAIVTWGEGYHNYHHYFQydyrnGVKWWQYDPTKWII 267
                    *********.***********************************998754 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   6.9   1.5e-05     0.069      97     182 ..     292     381 ..     275     387 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
                     HCCHCHHHHHHHHHH.HHHHHHHHCHHHHHHHH...HHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXXX CS
  Apolipoprotein  97 lavyaeelrerlerh.vealkarlapyveelrq...klaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanleelk 182
                     l+   + ++er+ ++   +l +rla++ e++ +   +  + +ee++   a + e  +++l++r++e+ ekl++q+++++ ++ +++++++
      EGE27444.1 292 LTMQFKRAQERIVTGgEPSLDERLAAFKERISAeydEFTKTVEEWHTLKAKAIELKRAELADRLNEADEKLKAQLAQIETKILEQSKRVE 381
                     444445566666666433555555555566553222666677777766555555555777788888888888777777777777777666 PP

>> MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.3   2.9e-05      0.13      74     135 ..     320     382 ..     313     387 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
    MIP-T3_C  74 dfiqdDidsMqrELemWrseyrq.qaeelaeerrateealeplkaqlaeleeaIkdqkekisn 135
                 + i    d  ++  e W+  + +  + + ae     +ea e+lkaqla++e +I +q +++++
  EGE27444.1 320 ERISAEYDEFTKTVEEWHTLKAKaIELKRAELADRLNEADEKLKAQLAQIETKILEQSKRVEQ 382
                 677778899999999**986544045555666677799*******************999876 PP

>> DUF737  Protein of unknown function (DUF737)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.2   0.00043       1.9     126     189 ..     316     384 ..     283     391 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00043
      DUF737 126 ailrerlste.dErlkaqllelerkarqLeekekeLkkq....dafYkeqlakLeeknaefykvtaeqf 189
                 a  +er+s+e dE  k+   +  +ka+ +e k +eL+ +    d+  k qla++e k  e  k   + +
  EGE27444.1 316 AAFKERISAEyDEFTKTVEEWHTLKAKAIELKRAELADRlneaDEKLKAQLAQIETKILEQSKRVEQAY 384
                 445666666535556666669999999999999987543333399999999999999999998877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1504  (0.0838864); expected 358.6 (0.02)
Passed bias filter:                      729  (0.0406604); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2811.52
//
Query:       EGE27445.1  [L=37]
Description: hypothetical protein EA1_02242 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 289.23
//
Query:       EGE27446.1  [L=200]
Description: TetR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-05   24.0   0.0    5.4e-05   22.9   0.0    1.6  1  TetR_N    Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     3e-09   5.4e-05      27      47 .]       4      24 ..       2      24 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3e-09
                TSSHHHHHHHTSSHHHHHHHH CS
      TetR_N 27 GvskgalYryFpsKeeLleal 47
                 ++kg+lY++F+sK+eLl+++
  EGE27446.1  4 DLAKGTLYKHFASKDELLLRI 24
                579***************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1589.80
//
Query:       EGE27447.1  [L=462]
Description: putrescine importer [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-34  119.8  43.5    1.5e-34  119.4  43.5    1.1  1  AA_permease    Amino acid permease
    9.1e-32  110.4  48.8    1.2e-31  110.0  48.8    1.1  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
      0.018   15.4   0.0      0.055   13.8   0.0    1.8  1  MMgT           Membrane magnesium transporter


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4  43.5   2.6e-38   1.5e-34       1     408 [.      20     408 ..      20     443 .. 0.85

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 2.6e-38
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  hv++i l+ + + +l+   gvv +  ++  +  +y++a + i+l+ +s g +  ++p+sg++yty ++++ p++Gf++G++ ++ +++   + ++ a+
   EGE27447.1  20 HVIIIGLAYIQPMTLLDTFGVVSRDSSG-HVPMSYIFALIAILLTSVSYGHMIRAYPSSGSAYTYTQKSINPSMGFMVGWSSWLDYLLSPLVNIILAV 116
                  8899999998888887777777777666.99**************************************************9999999999999999* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                  i+++ +  +++++  wv+++ ++++++++nl+g k+ + +  ++ ++ +  i+ f+ ++   l+ g++++g  + ++ ++ +s     + p +++ ++
   EGE27447.1 117 IYLEAL--FPAVN-HWVWVIGLTALMTGVNLFGSKAVAYFNSWIVFVQLAVIAVFVFLTYNALSAGQNADGIiSPENAYHLWS-----MAPFWDSMTS 206
                  ******..*****.*******************************99999999999999878888888888675556666666.....5555555666 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplin 293
                    +++ i ++ i+ f+ftG+ ++ ++a+E+kd + ++Pka++ + ++ ++++++s++++ l +p    + ++ + ++   +  +++  g +v++ ++ 
   EGE27447.1 207 --VAALIKGATILCFSFTGFDALSTLAEETKDAKNTLPKAMILTTLIAGVVFIISTYFMQLYFPNHPETYFKLIDET---QPEILEAVGGAVFKAVVL 299
                  ..9********************************************************************965555...99**************** PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylr 389
                   + +++++ s++s+ +  sR++y + +dg++    ++k +     P++ il+  +++l a     ++++  +v+n l+++ al +++   ++ l +++
   EGE27447.1 300 GFAIVTVMASGISAHAGVSRLMYVMGRDGVISknIFGKIHPTLFTPVNNILIAGVVALTAG---FVTFE--SVIN-LISFGALTAFSFVNISVLFHYV 391
                  ********************************9778888899999***9987766666655...33334..4444.4455556666655666666779 PP

  AA_permease 390 fRkalkyqgrsieelgfka 408
                  fR+++  + +++  l++++
   EGE27447.1 392 FRNKYVHNAKDV--LSYII 408
                  999988887744..55543 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0  48.8     2e-35   1.2e-31      30     402 ..      51     420 ..      16     443 .. 0.76

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 2e-35
  AA_permease_2  30 palilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasyllnalgpdlqgntwltyliaiai 125
                    + + +  +ia+l+  ++v++  +  ++  p+sg +y+yt++ +++ ++f+++w++w++y++  +++++++a  +l al+p ++++ w     +i++
     EGE27447.1  51 M-SYIFALIAILL--TSVSYGHMIRAY--PSSGSAYTYTQKSINPSMGFMVGWSSWLDYLL-SPLVNIILAVIYLEALFPAVNHWVW-----VIGL 135
                    2.22223333333..357777776677..********************************.6799999999999999****88754.....4567 PP

  AA_permease_2 126 lilvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdt...ffpngwpgv......llgllivlwsfdGfesa 207
                    ++l + +n++g k +a+++++++ + +  ++++++ l + ++++g++ +           +   +++ +w+++      + g +i ++sf+Gf++ 
     EGE27447.1 136 TALMTGVNLFGSKAVAYFNSWIVFVQL-AVIAVFVFLTYNALSAGQNADGiispeNA---YhlwSMAPFWDSMtsvaalIKGATILCFSFTGFDAL 227
                    999************************.699****9999999998888777754322...24447777999975555555577889********** PP

  AA_permease_2 208 anvseevkk.k.dvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsllgaintavigssrvlea 301
                    +  +ee k  k ++pka+++  li++v+++  + +++   p    +  + + ++    +eavgg v++++v  ++++ ++ ++++a +g+sr+++ 
     EGE27447.1 228 STLAEETKDaKnTLPKAMILTTLIAGVVFIISTYFMQLYFPNHPETYFKLIDETQPEILEAVGGAVFKAVVLGFAIVTVMASGISAHAGVSRLMYV 323
                    ******9987636*************************999977655554334556799999*999999999************************ PP

  AA_permease_2 302 lardgvlP.rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphl.kr.....pgkilvai 389
                    ++rdgv+  + f k++    +p++ i +  +v+ + + ++       +  + ++ s+g++  + ++ i++l++++ r+++          +i+v i
     EGE27447.1 324 MGRDGVISkNIFGKIHpTLFTPVNNILIAGVVA-LTAGFV------TFESVINLISFGALTAFSFVNISVLFHYVFRNKYvHNakdvlS-YIIVPI 411
                    ****************8888****999999999.443333......2799****************99999988555544344124422.233333 PP

  AA_permease_2 390 igalfllfllval 402
                     g++++++    +
     EGE27447.1 412 AGFISVFL----M 420
                    33333332....2 PP

>> MMgT  Membrane magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.1e-06     0.055      12      57 ..     218     271 ..     203     296 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.1e-06
        MMgT  12 gYSahehsallsaskkseqsatsLPlDitletlvslvllilglvl........s 57 
                 ++S   + al++ ++++++++++LP+ + l tl++ v++i+++ +         
  EGE27447.1 218 CFSFTGFDALSTLAEETKDAKNTLPKAMILTTLIAGVVFIISTYFmqlyfpnhP 271
                 99*********99999**************************998455554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3567.42
//
Query:       EGE27448.1  [L=255]
Description: pteridine reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-40  139.5   0.0    1.4e-40  139.3   0.0    1.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    4.9e-31  107.7   0.0    6.3e-31  107.3   0.0    1.1  1  adh_short      short chain dehydrogenase
    3.7e-07   30.2   0.0      5e-07   29.8   0.0    1.2  1  KR             KR domain
  ------ inclusion threshold ------
       0.01   15.3   0.1      0.029   13.8   0.1    1.7  2  Epimerase      NAD dependent epimerase/dehydratase family
      0.086   13.0   0.0       0.24   11.5   0.0    1.8  2  DUF2325        Uncharacterized protein conserved in bacteria 
       0.11   11.8   0.0       0.24   10.7   0.0    1.5  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.16   11.3   0.0       0.24   10.8   0.0    1.3  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.0   5.6e-44   1.4e-40       3     232 ..      11     247 ..       9     249 .. 0.90

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 5.6e-44
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTT..SEE....EE--T.TSHHHHHHHHHHHHHHHSSEEEEEE-----EG.CSS-GGGH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea.kkrveelaeelg..aev....lecDV.tdeeqvealveevvekfgklDilvnnagiapk.lkgpflet 90 
                   a+ IG+ai  +l+++G +v++++   +a ++++    +++   + +     ++D+  ++eq+ ++ + + ++fg++D l++na    +   +++++t
    EGE27448.1  11 AKRIGAAITNLLHQHGFNVIIHYHTSQAeADKLSHTLNQIRpnS-AttlcANLDIiHHQEQLSEFSKLCIAQFGRIDALIHNASSFYPsDLNDTHQT 106
                   677*********************99998788887777776442.2345788996367899**********************98888777889999 PP

                   -HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEE.EEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTH CS
  adh_short_C2  91 sreefdraldvnlyslfllakaalplmkeg.gsivnl.ssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgf 185
                     +++d+ + +n+++ +ll++a+lp++k++ g iv l    +  + + +y +y++aKaa   ++++lA el+p +iR+N vspg+   + + + + +
    EGE27448.1 107 LLKHWDNLFLTNAKAPLLLSHALLPALKKShGCIVSLlDIHADAKPFIGYPIYNMAKAAHRMMVQSLALELAP-EIRINGVSPGVNIFPENHHSSFS 202
                   9************************777777****99355555667***************************.9******************9999 PP

                   HHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 186 delleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   +++++ l a++pl r+gtpee+a+a+lfL+   +syitGq++++DgG
    EGE27448.1 203 HQIKSDLIASIPLARIGTPEEIAQAVLFLLK--SSYITGQIIAIDGG 247
                   ******************************7..89************ PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   2.5e-34   6.3e-31       1     181 [.       3     190 ..       3     201 .. 0.93

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 2.5e-34
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT...TSEEEEEE-TTT.SHHHHHHHHHHHHHHHSSESEEEE---S...S--S CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee...gakalaiqvDvt.dreevealvekavkklgkldvLvnNAGi...tgsg 91 
                 k++l+tG+++ IG ai + l + G++v++ +  s++++ ++   l++    +a+ l++++D+  ++e+++++ + +++++g++d+L++NA+    +  +
  EGE27448.1   3 KTALITGGAKRIGAAITNLLHQHGFNVIIhYHTSQAEADKLSHTLNQIrpnSATTLCANLDIIhHQEQLSEFSKLCIAQFGRIDALIHNASSfypSDLN 101
                 79***************************99888888877777777766558889999999987999*************************9999999 PP

                 SGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS CS
   adh_short  92 pfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGl 181
                 +++++  + w++++ +N ++++ll++a+lpa lk+s G Iv    +++  +p++g++ Y  +Kaa +++++sla elap+ ir+n+v PG+
  EGE27448.1 102 DTHQTLLKHWDNLFLTNAKAPLLLSHALLPA-LKKSHGCIVSLLDIHAdAKPFIGYPIYNMAKAAHRMMVQSLALELAPE-IRINGVSPGV 190
                 999****************************.6699*******99999789****************************8.********96 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.9e-10     5e-07       2     101 ..       4     104 ..       3     131 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.9e-10
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----T.T-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDv.sdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 t litGG+  +G ++++ l ++g + ++    s+a+ ++ ++++++++ + a+  ++++D+  +++++++  + + a++++i   ih A  +  + l++
  EGE27448.1   4 TALITGGAKRIGAAITNLLHQHGFNVIIHYHTSQAEADKLSHTLNQIRPNSATTLCANLDIiHHQEQLSEFSKLCIAQFGRIDALIHNASSFYPSDLND 102
                 579***********************9999999888888889******************8256789999999999999**********9988877776 PP

                 -- CS
          KR 100 mt 101
                 + 
  EGE27448.1 103 TH 104
                 55 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.1e-05     0.029       1      54 [.       5      68 ..       5     112 .. 0.69
   2 ?   -1.4   0.0       0.5   1.3e+03     142     179 ..     159     198 ..     152     233 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrs 54
                +l+tG++  iG+a+++ l ++g +vi   + s+a++ ++ ++l             +ld+ +++
  EGE27448.1  5 ALITGGAKRIGAAITNLLHQHGFNVIIHYHTSQAEADKLSHTLnqirpnsattLCANLDIIHHQ 68
                59*****************************999998888877888877777633344443333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.5
                 HHHHHHHHHHHHHHHHHHH..T-EEEEEEESEEESTTS-T CS
   Epimerase 142 YaaaKlageklveayaaqy..glnaiilrlfnlyGprnge 179
                 Y +aK+a   +v+++a +   ++++  + +  ++ p n++
  EGE27448.1 159 YNMAKAAHRMMVQSLALELapEIRINGVSPGVNIFPENHH 198
                 8888888888888877765334555555555444444333 PP

>> DUF2325  Uncharacterized protein conserved in bacteria (DUF2325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.5e-05      0.24       2      44 ..       5      47 ..       4      53 .. 0.82
   2 ?   -3.2   0.0       3.6   9.2e+03      24      49 ..      62      87 ..      54      89 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.5e-05
     DUF2325  2 vlivGGddrmeeqyrklleklggklkvfdgrkekkkkkleski 44
                +li GG +r+   +++ll+++g++++++ + ++ +  kl++ +
  EGE27448.1  5 ALITGGAKRIGAAITNLLHQHGFNVIIHYHTSQAEADKLSHTL 47
                6899*******************87777777776666777665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.6
     DUF2325 24 gklkvfdgrkekkkkkleskigkaDl 49
                 ++++++++ ++ +k   ++ g+ D+
  EGE27448.1 62 LDIIHHQEQLSEFSKLCIAQFGRIDA 87
                45666666666555544455555555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.4e-05      0.24      43      96 ..      10      66 ..       3      81 .. 0.76
   2 ?   -3.5   0.0       2.3   5.8e+03     127     145 ..     119     137 ..     112     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.4e-05
                  S-SHHHHHHHHHHHHTT-EEEEESSSHHHHH...CHHHHTCEECSHHHHHHH-SEEE CS
  2-Hacid_dh_C 43 GlGrIGqavakrlkafgmkviaydrskkkee...eeeelgvelvsleellaesDivs 96
                  G+ rIG a+ ++l++ g++vi++ ++ ++e+   +   ++++  s  +l+a+ Di+ 
    EGE27448.1 10 GAKRIGAAITNLLHQHGFNVIIHYHTSQAEAdklSHTLNQIRPNSATTLCANLDIIH 66
                  5679***************99998888876654433444557788899999999886 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.3
                   S-GGGB-HHHHHHHHHTTS CS
  2-Hacid_dh_C 127 aRGglvdeeaLleaLksgk 145
                   a+++l+   aLl aLk+ +
    EGE27448.1 119 AKAPLLLSHALLPALKKSH 137
                   6777778888888888765 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.2e-05      0.24       1      48 [.       6      52 ..       6     100 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.2e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT... CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpke 48
                   LiTG+a  iG+ +++lL + g++v++   ++s+ ++++++h  ++ + 
     EGE27448.1  6 LITGGAKRIGAAITNLLHQHGFNVII-HYHTSQAEADKLSHTLNQIRP 52
                   9***********************75.566777889999998765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2056.97
//
Query:       EGE27449.1  [L=389]
Description: tRNA nucleotidyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-18   66.8   0.1    1.2e-17   64.5   0.1    2.0  1  PolyA_pol        Poly A polymerase head domain
    2.9e-09   36.6   0.0    7.6e-09   35.2   0.0    1.8  1  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym


Domain annotation for each model (and alignments):
>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   1.3e-21   1.2e-17       1     126 []       3     131 ..       3     131 .. 0.78

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 1.3e-21
                 EEEETHHHHHHHTT---CEEEEEECS-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEEEEECCEECEEEEEE---SSHHH...HHHHHHCTSSBGGG CS
   PolyA_pol   1 lylvGGaVRDlllgkepkDvDlatdaapeelakllrkkvkeallsgeefqtiavlekkqllevatfRlekdesdarnpesekstesleeDlkrRDftiN 99 
                 +ylvGGaVRD +lg +  D D+++ +a  ++   l   + +   +g +f +    + + ++ +a++  ++   + + + ++  + +leeDl+rRD+tiN
  EGE27449.1   3 VYLVGGAVRDGVLGLPITDKDFMVVGATPQVLLDL--GFIQ---VGVDFPVFLHPKTQAEYALARIERKSGVGHTAFQVHADPSVRLEEDLIRRDLTIN 96 
                 6*********************9886555554333..2222...47788777666666666666665555555555555555566************** PP

                 S-EEE........CTTTCEE-TTSHHHHHHTTEE- CS
   PolyA_pol 100 alayn........lnkgkvlDlfgGikdLkskvir 126
                 ala++        + +gkv+D++gG+ d++++ +r
  EGE27449.1  97 ALAIEvkglfdetPMTGKVIDFYGGLTDIQNRTLR 131
                 **********99999*****************987 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   8.5e-13   7.6e-09       1      62 [.     158     221 ..     158     223 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 8.5e-13
  PolyA_pol_RNAbd   1 gFtIepeTaaairklap..lLkkispeRifeEllKlLlsghpeaglelLretgLlkylfPelaa 62 
                      gF+I+  Ta+ +++ a+  +++ +s eR++ E++K + ++++ + +  L ++ +l +++P la+
       EGE27449.1 158 GFSIHDSTAKLMQDIAKsgEMSSLSRERLYSEFVKAMRQPQGDQFIACLHQLDILPFILPTLAQ 221
                      8***********************************************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3202.21
//
Query:       EGE27450.1  [L=776]
Description: malic enzyme [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-91  304.4   0.0    1.4e-90  303.8   0.0    1.2  1  PTA_PTB        Phosphate acetyl/butaryl transferase
    7.2e-29  100.9   5.7    6.8e-28   97.7   0.4    3.1  3  malic          Malic enzyme, N-terminal domain
    3.4e-25   88.8   1.4    1.7e-24   86.5   1.4    2.0  1  Malic_M        Malic enzyme, NAD binding domain
  ------ inclusion threshold ------
      0.069   12.9   1.4       0.12   12.1   0.0    2.1  3  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro
       0.16   12.0   0.0       0.31   11.0   0.0    1.4  1  MIT_C          Phospholipase D-like domain at C-terminus of M


Domain annotation for each model (and alignments):
>> PTA_PTB  Phosphate acetyl/butaryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.8   0.0     4e-94   1.4e-90       3     318 ..     449     767 ..     447     768 .. 0.99

  Alignments for each domain:
  == domain 1  score: 303.8 bits;  conditional E-value: 4e-94
                 HHHHHHHHCTS--EEEES-TTSHHHHHHHHHHHHTTSSEEEEES..-HHHHHHHHHHCTB--TT.-EEE-TTT-CCHHHHHHHHHHHCCCC.S-HCCHH CS
     PTA_PTB   3 lerivekakkekkrivlpegedervlkAakelleegiadviLig..deaeikakaleldldlsg.ieivdpetsekleeyadelyelrkrkgvtieear 98 
                 +++++ +ak+++kriv +eged +vl+A++ +++e++a++i+ig  d++e k k+l+l+l+++  +e+vd+++++k+e+y++++++   r gv  e ar
  EGE27450.1 449 MKPVFTQAKQAPKRIVYAEGEDANVLRAVQVVVDENMAQPIIIGrpDVIEAKIKELGLRLTMGEhVEVVDINNNPKHEQYWQHYHQANHRLGVSAELAR 547
                 7899******************************************9***************999********************************** PP

                 HHTT.SHHHHHHHHHHTTSSSEEEE-TTS-HHHHHHHHHHCT-B-TT----EEEEEEEETTEEEEEESSSS-SS--HHHHHHHHHHHHHHHHHCCSS-- CS
     PTA_PTB  99 evvr.datyfaamlvklgeaDglvsGavnttadtlrpalqiiktkpgvklvSsvfimlledrlllfaDcavnvnPtaeelaeialesaktakalgeeep 196
                 + +r + ++++am+v++g+aDgl++G +  +  +l+ ++++i++++gv+   +++ ++l+dr+l+ aD ++++nPta ++ae+++ +a++++++g  ep
  EGE27450.1 548 RDMRrKSSLLGAMMVEQGDADGLLCGTFGYYDLHLNYIRRVIGKRQGVSDYYAMSGVILQDRTLFIADPYIHENPTAAQIAEMTVLAAQSIRRFG-VEP 645
                 ****9******************************************************************************************.*** PP

                 EEEEE-SSSTTSS-SHHHHHHHHHHHHHHHH-TTSEEEEEE-HHHHH-HHHHHHH-TTSTTTT--SEEE-SSHHHHHHHHHHHHHCCTEEEEEEEEESB CS
     PTA_PTB 197 rvAlLSyStkgsakgesvekvrealkivkekapdlvvdGelqlDaAlseevaekkapesevaGkAnvlvfPdLeagnigykivqrlakaeaiGPilqGl 295
                 rvAlLS+S++g ++  s+ k+rea +i+ + ++d++ dGe++ DaAl+ +v+e+  p s+++G+An+l++P L+a+ i++ +++  ++++aiGPil+G 
  EGE27450.1 646 RVALLSHSDFGTSQRTSAVKMREAYQILCNMNVDFEFDGEMHGDAALDVRVREQSHPFSTLHGSANLLIMPTLDAAHIAFNLLKSSSGSSAIGPILLGA 744
                 *************************************************************************************************** PP

                 SS-EEE--TT--HHHHHHHHHHH CS
     PTA_PTB 296 akPvndlSrgasvedivnvaait 318
                 +kPv++l ++ ++++ivn++ai 
  EGE27450.1 745 DKPVHILVPASTARRIVNMTAIV 767
                 *********************96 PP

>> malic  Malic enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.4   1.9e-31   6.8e-28       2     182 .]      40     172 ..      39     172 .. 0.96
   2 ?   -2.6   0.0       1.1     4e+03      46      85 ..     247     286 ..     239     295 .. 0.75
   3 ?   -3.8   0.3       2.7   9.5e+03      67      78 ..     763     774 ..     760     774 .. 0.82

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 1.9e-31
                 TTECCCCCCHHCCCHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS.SS..EEEEE-SSSBTTTBS-G.HHHHHHHHHHHHHH CS
       malic   2 eknetlfykllkekleellpivYtPtvgeacqeyseeyrkarglylsikdkekikeilknlpeedvkvivvtdgeriLGlGdlG.vagvgimvGKlaLy 99 
                 +k++++++k ++++  ++l+++Y+P+v+ +c e++++++ a  +y+++++                 v v+t+g+++LGlG++G +a++++m+GK +L+
  EGE27450.1  40 GKISITPTKKIANQ--RDLALAYSPGVAVPCLEIEKNPKLAA-KYTARNNL----------------VGVITNGTAVLGLGNIGaLASKPVMEGKGVLF 119
                 57888999999999..**********************9999.********................9******************************* PP

                 HHHHS-EGGGEEEEEECS-BS.HHHHC.TT..S.SSB...SHHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHHC CS
       malic 100 talagidPekvlpvvldvgtnneelledplYlGlrkkRvkgeeydefvdefveavkelfppkaliqfEDfkaknafeileryr 182
                 +++agid   v++++++ +                           + d+f+eav++l+p++++i++ED+ka+++f+i++ +r
  EGE27450.1 120 KKFAGID---VFDIEINQN---------------------------DPDKFIEAVASLEPTFGGINLEDIKAPECFKIERELR 172
                 *******...*******99...........................99*******************************9876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
                 CCEGGGETCHHHHHTTSS.SS..EEEEE-SSSBTTTBS-G CS
       malic  46 ylsikdkekikeilknlpeedvkvivvtdgeriLGlGdlG 85 
                  + +++ +  k+++++ ++ +    v+ d++  LGl   G
  EGE27450.1 247 TTRRDNLDASKQLFAQDTNATTLSEVIDDADFFLGLSGPG 286
                 3455667777888888888888889999999999997666 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.7
                 ..EEEEE-SSSB CS
       malic  67 vkvivvtdgeri 78 
                 + +ivvtd++++
  EGE27450.1 763 MTAIVVTDAQKV 774
                 679*****9876 PP

>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   1.4   4.7e-28   1.7e-24       3     228 ..     186     377 ..     184     383 .. 0.91

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 4.7e-28
                 HHHHHHHHHHHHHHHHH-S-GGG--EEEEC-SHHHHHHHHHHHHHHHTTTS-HHHHHTTEEEEETTEE-BTT-S---TTTGGGSBS--SS--S....SH CS
     Malic_M   3 gTaavalagllaalkitgkklseqkivvlGaGsagiGiaeqivealvkeGlseeeakkkiylvDrkGLltedrekleeekkpfakkkeelkeakdkltL 101
                 gTa++a+a+ll+alk+ +k +++ kiv+ GaG+a+i   e+i++  +k        ++++y++D++G++t++r++l+  k+ fa++++ +       tL
  EGE27450.1 186 GTAIIAAAALLNALKLVNKDIADIKIVCSGAGAAAISCLELIIALGAK--------RSNVYVLDSRGVITTRRDNLDASKQLFAQDTNAT-------TL 269
                 9***********************************999999876544........679*************************998877.......5* PP

                 HHHHHHH--SEEEE-SSSSS-S-HHHHHHHHHHSSS-EEEE--SSGGGSSS-HHHHHHHTTT-SEEEESS----EEETSEEE--EE--GGGTHHHHHHH CS
     Malic_M 102 eevvkkvkptvliGlsgvagafteeivremaksterPiilplSNPtskaEataedvlkwtdgkalvasGsPfkpvelngktyeigQaNNayifPglglg 200
                 +ev+++  ++  +Glsg +g++t+++v+ ma    +Pii++l NP    E ++ ++ + ++ ++++a+G          +  +++Q NNa+ fP +  g
  EGE27450.1 270 SEVIDD--ADFFLGLSG-PGILTQDMVKRMAG---NPIIFALANPNP--EIMP-ELAHAARPDVIMATG----------RSDYPNQVNNALCFPYIFRG 349
                 *****8..689*****9.79**********97...6*********87..5555.466678899999998..........57789*************** PP

                 HHHTT-SS--HHHHHHHHHHHHTT--HH CS
     Malic_M 201 vivarakritdemllaaaealaelvsee 228
                 ++ ++a+ +++em  a+ +a+a+++++e
  EGE27450.1 350 ALDVGATIVNEEMKIACVHAIATMAHTE 377
                 ***********************99876 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.3       2.6   9.4e+03      35      53 ..      95     113 ..      87     117 .. 0.81
   2 ?   12.1   0.0   3.3e-05      0.12      10      75 ..     187     254 ..     180     287 .. 0.73
   3 ?   -2.7   0.0       1.1     4e+03      50      94 ..     553     600 ..     550     615 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.6
                    EEEE--SHHHHHHHHHHHH CS
  ELFV_dehydrog  35 vaisGsGnvgsyaalllte 53 
                     a+ G Gn+g  a + ++e
     EGE27450.1  95 TAVLGLGNIGALASKPVME 113
                    5789******999887765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.3e-05
                    HHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-E..EEEEEESSEEEEET.TEE- CS
  ELFV_dehydrog  10 TglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgak..vvavsDssGviydp.eGld 75 
                    T++ +++++ ++lk ++ d +++ +++ sG G  +  + +l++ lgak   v v Ds+Gvi    + ld
     EGE27450.1 187 TAIIAAAALLNALKLVNKD-IADIKIVCSGAGAAAISCLELIIALGAKrsNVYVLDSRGVITTRrDNLD 254
                    5555556666677776666.9999**********************983358899******96514444 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
                    HHHHCT-EEEEEEESSEEEEETTEE...-HHHHHHHHHCSSSSTTHSH CS
  ELFV_dehydrog  50 lltelgakvvavsDssGviydpeGl...dieellelkeerksvkeykk 94 
                    +++ lga +v   D +G ++ + G    +++++ ++  +r++v++y  
     EGE27450.1 553 KSSLLGAMMVEQGDADGLLCGTFGYydlHLNYIRRVIGKRQGVSDYYA 600
                    566689999999999999999999887799999999999999888874 PP

>> MIT_C  Phospholipase D-like domain at C-terminus of MIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.6e-05      0.31      16      92 ..     609     687 ..     596     693 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.6e-05
       MIT_C  16 teikiedpYirar...hqirnlvrllellvkkskklkkikLlTsede.eeedeqkenleelkesleklgielevefsstih 92 
                 +++ i dpYi ++    qi  ++ l+   +++   + ++ Ll+++d  +++++   +++e  + l ++++++  ef+ ++h
  EGE27450.1 609 RTLFIADPYIHENptaAQIAEMTVLAAQSIRRFGVEPRVALLSHSDFgTSQRTSAVKMREAYQILCNMNVDF--EFDGEMH 687
                 45789*****987222455555555555556688999*********95555555555666666666666655..5666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5474.36
//
Query:       EGE27451.1  [L=332]
Description: delta-aminolevulinic acid dehydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-132  439.8   1.1   5.8e-132  439.7   1.1    1.0  1  ALAD      Delta-aminolevulinic acid dehydratase


Domain annotation for each model (and alignments):
>> ALAD  Delta-aminolevulinic acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.7   1.1  3.2e-136  5.8e-132       2     316 ..      11     328 ..      10     329 .. 0.97

  Alignments for each domain:
  == domain 1  score: 439.7 bits;  conditional E-value: 3.2e-136
                 --GGGGGSSHHHHHHC-S----GGGEEEEEEEESS-SS-EE-TTSTT-EEEEGGGHHHHHHHHHHTT--EEEEEEE-SS..-BSS-GGGGSTTSHHHHH CS
        ALAD   2 krlrrlrksealrelvretrlsasdlilplfvkegeeekeeiksmpgvyrlsvdelvkeveelvklgikavllFgvpee..kdeegsealnedglvqra 98 
                 +rlrrlr s+ +re+vret+l + +li+p+fv eg ++k++i+smp+v+r+s+d l++ v+el+++g++ + +F v +   k+++g++a+++d+l+ ra
  EGE27451.1  11 TRLRRLRISDGIREMVRETQLAPCHLIAPVFVIEGMNQKQSIHSMPNVHRYSIDLLIDYVRELYATGVRMIDIFPVIDPklKTPDGQDAYHNDTLAVRA 109
                 79************************************************************************9974446****************** PP

                 HHHHHHH-TTSEEEEEE-STTTBSS-SSSEEESS..EEHHHHHHHHHHHHHHHHHCT-SEEEE-S--TTHHHHHHHHHHHTT-TT-EEB---EEB--CG CS
        ALAD  99 iraikeevpelvvitDvclceytshGhcgileeke.vdndetlellakvavsqaeaGadivapSdmmDgrvaaireaLdeagfeevailsYsaKyaSaf 196
                 +raik++vp+++v+tDv+l++yt+hG++gi++e+  v nd t e+l k+++++a+aGadi++pSdmmDgr++a+r+aL++ g+ ++ai++YsaKyaSa+
  EGE27451.1 110 VRAIKDAVPQMIVMTDVALDPYTTHGQDGIIDESGyVINDITTEALIKQTLAHAKAGADIISPSDMMDGRIQAMRQALENGGYVNTAIMAYSAKYASAY 208
                 *******************************65434*************************************************************** PP

                 GHHHHHHHT---S..S--TTTSB-TT-HHHHHHHHHHHHHTT-SBEEEES-TTGHHHHHHHHTT-SS-EEEEE-HHHHHHHHHHHHTTSS-HHHHHHHH CS
        ALAD 197 YgPFrdaaesaps.fgdrktYqmdpansrealreveldleeGADivmvKPalaylDiirevkeefdlpvaayqvSGEYamikaaaengwldekkvvlEs 294
                 YgPFrda++s+ + +g +k+Yqmdpan+ eal+ev+ld++eGAD+vmvKP+ +ylDi++evk++f +p++ayqvSGEYam +aa++ngwl +++v+lEs
  EGE27451.1 209 YGPFRDAVGSSGNlKGHKKQYQMDPANRAEALHEVALDIQEGADMVMVKPGQPYLDIVSEVKDTFGVPTFAYQVSGEYAMHMAAIQNGWL-TDAVILES 306
                 **********965489*************************************************************************9.799***** PP

                 HHHHHHTT-SEEEETTHHHHHH CS
        ALAD 295 llsikRAGadliltYfakevak 316
                 l++++RAG+d iltYfa ++a+
  EGE27451.1 307 LIGFRRAGCDGILTYFALDAAR 328
                 *******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2664.94
//
Query:       EGE27452.1  [L=170]
Description: hypothetical protein EA1_02277 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1305.20
//
Query:       EGE27453.1  [L=329]
Description: Holliday junction DNA helicase RuvB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-80  268.1   0.0    2.8e-80  267.6   0.0    1.2  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.5e-31  107.9   0.7      3e-31  107.0   0.7    1.5  1  AAA_lid_4        RuvB AAA lid domain
      2e-25   88.5   0.0    3.4e-25   87.7   0.0    1.4  1  RuvB_C           RuvB C-terminal winged helix domain
    4.7e-17   62.6   0.0    7.9e-17   61.9   0.0    1.4  1  AAA              ATPase family associated with various cellul
    2.9e-08   33.8   0.1    1.2e-05   25.3   0.1    2.3  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00015   21.1   0.2     0.0013   18.0   0.0    2.0  2  TIP49            TIP49 P-loop domain
    0.00026   21.3   0.4      0.071   13.4   0.0    2.5  2  AAA_22           AAA domain
    0.00038   20.2   0.0       0.69    9.6   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
    0.00089   18.7   0.4       0.19   11.1   0.0    2.9  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0018   18.2   0.0     0.0028   17.6   0.0    1.4  1  Rad17            Rad17 P-loop domain
     0.0018   18.2   0.0       0.34   10.8   0.0    2.4  2  AAA_3            ATPase family associated with various cellul
     0.0042   17.6   0.0     0.0089   16.6   0.0    1.6  1  AAA_18           AAA domain
     0.0043   17.5   0.4      0.061   13.7   0.0    2.4  3  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.023   15.1   0.0    1.5  1  RNA_helicase     RNA helicase
      0.021   14.9   0.0      0.079   13.0   0.0    1.9  1  AAA_14           AAA domain
      0.025   15.1   0.0      0.052   14.1   0.0    1.5  1  ABC_tran         ABC transporter
      0.029   14.8   0.1      0.069   13.6   0.1    1.7  1  AAA_17           AAA domain
      0.062   13.2   0.6       0.52   10.2   0.1    2.2  2  NTPase_1         NTPase
      0.066   13.3   0.0       0.12   12.5   0.0    1.3  1  Sigma54_activ_2  Sigma-54 interaction domain
      0.068   12.2   0.0       0.12   11.4   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
       0.09   12.5   1.0        0.7    9.6   0.1    2.6  3  IstB_IS21        IstB-like ATP binding protein
      0.099   12.3   0.1       0.24   11.1   0.0    1.5  2  AAA_24           AAA domain
       0.11   12.8   0.7        2.1    8.7   0.1    2.4  2  AAA_19           AAA domain
       0.24   10.6   0.0       0.58    9.3   0.0    1.5  2  NB-ARC           NB-ARC domain


Domain annotation for each model (and alignments):
>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.6   0.0   3.8e-83   2.8e-80       1     159 []      21     179 ..      21     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 267.6 bits;  conditional E-value: 3.8e-83
      RuvB_N   1 lrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaalltnleekdvlfideihrlsra 99 
                 +rP+sl+eyigq kv+e++k+fi aa++r+ealdh+l++GpPGlGkttla+iiake+g +l++tsgPvle+agdlaa+ltnle++dvlfideihrls++
  EGE27453.1  21 IRPSSLDEYIGQPKVREQMKVFIPAARARGEALDHTLIFGPPGLGKTTLANIIAKEMGGNLRSTSGPVLERAGDLAAILTNLEAGDVLFIDEIHRLSPV 119
                 7************************************************************************************************** PP

      RuvB_N 100 veevlysamedfrldivigkGpsarsikldlpkftlvgattragllssPlrdrfgivarl 159
                 +ee+ly+amedf+ldi+ig+Gp+arsikldlp+ftlv+attraglls+Pl drfgiv+rl
  EGE27453.1 120 IEEILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLSAPLFDRFGIVQRL 179
                 *********************************************************997 PP

>> AAA_lid_4  RuvB AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.7     4e-34     3e-31       1      74 []     182     255 ..     182     255 .. 0.99

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 4e-34
   AAA_lid_4   1 YeeeeLeeivkrsakilgveieeegaaeiarRsRGTPRianrLLrRvrDfaqvkgdgkitkevakkaLellevd 74 
                 Y++e+L++ivkrsa++lgv++++ ga e+a+RsRGTPRianrLLrRvrD+a++kgdg  t+++a++aL++l vd
  EGE27453.1 182 YNVEDLTTIVKRSARLLGVAMDDGGALEVAHRSRGTPRIANRLLRRVRDYAEIKGDGVATADIASAALDMLAVD 255
                 9************************************************************************9 PP

>> RuvB_C  RuvB C-terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   4.6e-28   3.4e-25       1      68 [.     256     323 ..     256     325 .. 0.96

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 4.6e-28
                 TT---HHHHHHHHHHHHT.TT--B-HHHHHHHTT--HHHHHHTTHHHHHHTTSEEEETTEEEE-HHHH CS
      RuvB_C   1 elGLdeldikyLkllkekfkggpvglktlaailgeeketiedviEPyLlkeglIertsrGRilTkkgl 68 
                 ++GLd+ld++yL++l ++f+ggp+g+++laa++ e++ t+edviEPyLl++g+I+rts+GRi+++k +
  EGE27453.1 256 KQGLDQLDRRYLSVLSQRFHGGPAGVEALAAAMAEDRGTLEDVIEPYLLQQGYIQRTSKGRIISDKVF 323
                 58**************************************************************9865 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   1.1e-19   7.9e-17       2     130 ..      57     179 ..      56     181 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 1.1e-19
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS. CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk. 99 
                 l++GppG GKT+la+ +ake+g ++ ++sg+ l       ++ +++++++++++     +lfiDEi++l +              + L++++++++ + 
  EGE27453.1  57 LIFGPPGLGKTTLANIIAKEMGGNLRSTSGPVLE------RAGDLAAILTNLEAG---DVLFIDEIHRLSPVI-----------EEILYPAMEDFQLDi 135
                 89*****************************999......9**********9776...6**********8888...........9************** PP

                 ..............SSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA 100 ..............eskvivigatnrpdkldpallrgRfdrkiei 130
                                 ++++++at+r   l+ +l  +Rf +++++
  EGE27453.1 136 migegpaarsikldLPPFTLVAATTRAGLLSAPLF-DRFGIVQRL 179
                 **************888******************.***998776 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   1.6e-08   1.2e-05       2     138 .]      56     173 ..      55     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.6e-08
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleegg 100
                  l+ GppG gK++la  +a+ ++ ++    ++       l    ++          ++ ++ + g++l++DE++r+++ + ++L + +e+ +l+++ g 
  EGE27453.1  56 TLIFGPPGLGKTTLANIIAKEMGGNLRSTSGPV------LERAGDL---------AAILTNLEAGDVLFIDEIHRLSPVIEEILYPAMEDFQLDIMIGE 139
                 6899****************9999987666655......6666666.........66677999*********************************999 PP

                 SEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5 101 elvkaknddllerfrviatanpldrslnelspalrsRf 138
                 +    + +  l++f+++a++ ++      ls++l +Rf
  EGE27453.1 140 GPAARSIKLDLPPFTLVAATTRAG----LLSAPLFDRF 173
                 9997776555666*******9999....8889999998 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.7e-06    0.0013      24      77 ..      27      80 ..      12      85 .. 0.88
   2 ?    0.6   0.1      0.34   2.5e+02     281     291 ..     107     117 ..     100     137 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.7e-06
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 24 eglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelged 77
                +  +Gq k re + v++   +++  a    L+ Gp+g Gkt la  i+ke+g +
  EGE27453.1 27 DEYIGQPKVREQMKVFIPAARARGEALDHTLIFGPPGLGKTTLANIIAKEMGGN 80
                5689****************9999999999*********************965 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.34
                 XXXXXXXXXXX CS
       TIP49 281 vlfiDevhmlD 291
                 vlfiDe+h l 
  EGE27453.1 107 VLFIDEIHRLS 117
                 9*******986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   9.6e-05     0.071       7      26 ..      55      74 ..      51      79 .. 0.87
   2 ?    5.5   0.1     0.026        20      93     110 ..     106     122 ..      73     136 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.6e-05
      AAA_22  7 ilvvtGesGtGKTtllrrll 26
                +++++G++G GKTtl++ ++
  EGE27453.1 55 HTLIFGPPGLGKTTLANIIA 74
                789************98665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.026
      AAA_22  93 elliiDEaqhlrseeale 110
                  +l iDE+++l s+ + e
  EGE27453.1 106 DVLFIDEIHRL-SPVIEE 122
                 58*********.643333 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0029       2.2       8      45 ..      39      76 ..      32      91 .. 0.76
   2 !    9.6   0.0   0.00092      0.69      93     124 ..     104     135 ..      83     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0029
                     HHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat  8 lkelleqikkvaktdlsvlitGesGtGKellaraihea 45
                     +k  +  +++  +   ++li G  G GK++la+ i ++
       EGE27453.1 39 MKVFIPAARARGEALDHTLIFGPPGLGKTTLANIIAKE 76
                     555555555555556799***************99774 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00092
                      TTSEEEEETGGGS-HHHHHHHHHHHHHSEEES CS
  Sigma54_activat  93 dgGtlfLDeigelplelQekLlrvlqegever 124
                       g +lf+Dei++l++ + e L  ++++ ++  
       EGE27453.1 104 AGDVLFIDEIHRLSPVIEEILYPAMEDFQLDI 135
                      5779*****************99999887764 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00025      0.19      23      43 ..      54      74 ..      25      82 .. 0.67
   2 ?    4.3   0.1     0.031        23     109     138 ..     107     136 ..     100     162 .. 0.86
   3 ?   -0.5   0.0      0.89   6.6e+02     184     200 ..     164     180 ..     154     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
  Mg_chelatase 23 HnlllvGppGsGKtmlakrlp 43
                   + l++GppG GKt la+ ++
    EGE27453.1 54 DHTLIFGPPGLGKTTLANIIA 74
                  467889***********9775 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.031
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevtis 138
                   vLf+DE+  ++  + e+L   +ed ++ i+
    EGE27453.1 107 VLFIDEIHRLSPVIEEILYPAMEDFQLDIM 136
                   9***********************998886 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.89
  Mg_chelatase 184 klsgplldRidlqvevk 200
                    ls+pl dR+ +  +++
    EGE27453.1 164 LLSAPLFDRFGIVQRLE 180
                   59********9976665 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.8e-06    0.0028      48      83 ..      56      91 ..      33     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.8e-06
       Rad17 48 LLisGPsGCgkstvvkvLskelgiklrewlnpvslk 83
                 Li GP+G gk+t  ++++ke+g +lr  + pv+ +
  EGE27453.1 56 TLIFGPPGLGKTTLANIIAKEMGGNLRSTSGPVLER 91
                599**************************9999865 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00045      0.34       1      27 [.      55      81 ..      55      85 .. 0.91
   2 ?    4.9   0.0     0.031        23      64      93 ..     106     135 ..      98     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00045
       AAA_3  1 hvllegvPGlaktllvkalakaldlef 27
                h l+ g PGl+kt+l++ +ak ++ ++
  EGE27453.1 55 HTLIFGPPGLGKTTLANIIAKEMGGNL 81
                99*******************998776 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.031
       AAA_3  64 nllladeinrappktqsalleameerqvtv 93 
                 ++l+ dei r +p ++  l  ame+ q+ +
  EGE27453.1 106 DVLFIDEIHRLSPVIEEILYPAMEDFQLDI 135
                 7899********************998765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.2e-05    0.0089       2      30 ..      57      83 ..      57     115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.2e-05
      AAA_18  2 lltGtpGvGKttlakeLskrlgfgvnlrd 30
                l+ G+pG GKttla+ ++k++  g nlr+
  EGE27453.1 57 LIFGPPGLGKTTLANIIAKEM--GGNLRS 83
                689*****************9..777665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   8.2e-05     0.061      22      51 ..      50      80 ..      36     101 .. 0.80
   2 ?    1.1   0.0       0.6   4.5e+02     126     155 ..      98     124 ..      88     136 .. 0.69
   3 ?   -2.6   0.0       8.2   6.1e+03     128     128 ..     230     230 ..     183     277 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.2e-05
      AAA_16 22 grp.elvllsGesGvGKsslvrellralekd 51
                g+    +l+ G++G GK++l++ +++++ ++
  EGE27453.1 50 GEAlDHTLIFGPPGLGKTTLANIIAKEMGGN 80
                3336889***************999887665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.6
      AAA_16 126 llallsrderplvlvlDdlqwadeaslqll 155
                 +l  l+      vl++D+++++ +   ++l
  EGE27453.1  98 ILTNLEA---GDVLFIDEIHRLSPVIEEIL 124
                 4444444...449*******9987655555 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 8.2
      AAA_16 128 a 128
                 +
  EGE27453.1 230 D 230
                 2 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.1e-05     0.023       2      29 ..      57      84 ..      56     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.1e-05
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkklklk 29
                  +++Gp+g GK+tla+ +ak++ ++l ++
    EGE27453.1 57 LIFGPPGLGKTTLANIIAKEMGGNLRST 84
                  689******************9888444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00011     0.079       6      85 ..      57     125 ..      54     143 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpewekalks 85 
                 +i G+   GKTtl++ ++ke           nl + +   l+   +l  ++ ++ +     +lf+DEi++++ + + + +
  EGE27453.1  57 LIFGPPGLGKTTLANIIAKEMG--------GNLRSTSGPVLERAGDLAAILTNL-E--AGDVLFIDEIHRLSPVIEEILY 125
                 799999*******888877766........333333332222222344555554.2..5789*******98665544443 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.9e-05     0.052      14      35 ..      56      77 ..      51     113 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.9e-05
                EEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagll 35
                + i+G+ G GK+tL++++a+++
  EGE27453.1 56 TLIFGPPGLGKTTLANIIAKEM 77
                789***************9876 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   9.2e-05     0.069       1      27 [.      59      85 ..      59     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.2e-05
                EE-TTSSHHHHHHHHHHHHTEEEEEHH CS
      AAA_17  1 lGgPGsGKgtqceklvekygfthlsaG 27
                +G+PG GK+t+++ +++++g    s++
  EGE27453.1 59 FGPPGLGKTTLANIIAKEMGGNLRSTS 85
                6****************9987666664 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00069      0.52       2      23 ..      56      77 ..      55      92 .. 0.82
   2 ?    0.9   0.1      0.49   3.7e+02      88     105 ..      97     114 ..      88     124 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00069
                EEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlell 23
                 +i GppG GKtTl + +++++
  EGE27453.1 56 TLIFGPPGLGKTTLANIIAKEM 77
                5788***********9999887 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.49
                 HHHHHHHHH-EEEE---S CS
    NTPase_1  88 alrkalseadviviDEiG 105
                 a+ + l+  dv+ iDEi 
  EGE27453.1  97 AILTNLEAGDVLFIDEIH 114
                 555667899*******95 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00016      0.12      25      87 ..      57     122 ..      48     135 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
                      EEEEETT--HHHHHHCC--TTS-EE--S...STTHHHH-HHHHHHHTTTSEEEEEE-TT--HHHHH CS
  Sigma54_activ_2  25 fltGekGsgkelvArlLhknsgpwleif...vverlaklpldlleqakggtLylkdiadlskaeqk 87 
                      ++ G++G+gk++ A++++k+ g++l  +   v+er ++l + l +   g +L++ +i+ ls+    
       EGE27453.1  57 LIFGPPGLGKTTLANIIAKEMGGNLRSTsgpVLERAGDLAAILTNLEAGDVLFIDEIHRLSPVIEE 122
                      799******************99887652224555556666666667999**********986655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.12     103     153 ..      24      77 ..      15      82 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
       T2SSE 103 ltlddlgaeealkekiaevlrkavrerg....lilvsGgTgsGKttllyallkei 153
                  +ld+++ +++++e+++ ++ +a r+rg      l+ G+ g GKttl++++ ke+
  EGE27453.1  24 SSLDEYIGQPKVREQMKVFIPAA-RARGealdHTLIFGPPGLGKTTLANIIAKEM 77 
                 5799*****************99.88872222468***************98876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00093       0.7      49      70 ..      55      76 ..      48      85 .. 0.87
   2 ?   -0.5   0.0       1.1   8.6e+02      95     118 ..      91     114 ..      87     125 .. 0.86
   3 ?   -1.1   0.0       1.8   1.3e+03     106     126 ..     246     266 ..     221     275 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00093
   IstB_IS21 49 nivllGpsGvGKshlaialgve 70
                  +++Gp+G GK+ la  +++e
  EGE27453.1 55 HTLIFGPPGLGKTTLANIIAKE 76
                5689************988865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
   IstB_IS21  95 rdgklaralkrllkvdllilDdlg 118
                 r g la +l++l + d+l +D++ 
  EGE27453.1  91 RAGDLAAILTNLEAGDVLFIDEIH 114
                 67899999*************985 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.8
   IstB_IS21 106 llkvdllilDdlgllpldqae 126
                  ++ d+l +D  gl +ld+  
  EGE27453.1 246 SAALDMLAVDKQGLDQLDRRY 266
                 456789999999999998765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00032      0.24       6      22 ..      57      73 ..      55      83 .. 0.87
   2 ?   -2.8   0.0       5.8   4.3e+03      62      79 ..     101     118 ..      92     125 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
      AAA_24  6 liyGpsgiGKTtlakel 22
                li+Gp+g GKTtla+ +
  EGE27453.1 57 LIFGPPGLGKTTLANII 73
                89***********9865 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.8
      AAA_24  62 eladyktlviDtidelee 79 
                 +l+  ++l+iD i  l  
  EGE27453.1 101 NLEAGDVLFIDEIHRLSP 118
                 556668999999988855 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0028       2.1      12      34 ..      55      77 ..      45      92 .. 0.82
   2 ?    2.3   0.0      0.27     2e+02      99     125 ..     101     127 ..      80     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0028
      AAA_19 12 vllvtaGpGtGKTrvlkhivall 34
                + l+ ++pG GKT++ + i +++
  EGE27453.1 55 HTLIFGPPGLGKTTLANIIAKEM 77
                6899**********988887776 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.27
      AAA_19  99 klqeeellivDEfqdvdelqyrLlkal 125
                 +l+++++l++DE+  +++++ ++l   
  EGE27453.1 101 NLEAGDVLFIDEIHRLSPVIEEILYPA 127
                 576788***********9998888655 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00077      0.58      24      43 ..      57      76 ..      47      81 .. 0.85
   2 ?   -3.2   0.0       5.2   3.9e+03     191     211 ..     271     291 ..     263     300 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00077
                EEEESTTSSHHHHHHHHCCS CS
      NB-ARC 24 alvGmgGvGKttlakqilnk 43
                 + G +G+GKttla+ i ++
  EGE27453.1 57 LIFGPPGLGKTTLANIIAKE 76
                589***********999876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.2
                 HHHCTT-HHHHHHHHHHHC-T CS
      NB-ARC 191 vekckGlPlalkvlggllstk 211
                 +++ +G P+ + +l+++++  
  EGE27453.1 271 SQRFHGGPAGVEALAAAMAED 291
                 566789999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2401.30
//
Query:       EGE27454.1  [L=427]
Description: acetyl-CoA acetyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-48  165.1   0.0    3.2e-48  164.3   0.0    1.4  1  Thiolase_N     Thiolase, N-terminal domain
    1.1e-31  109.0   0.1    2.6e-31  107.8   0.1    1.7  1  Thiolase_C     Thiolase, C-terminal domain
  ------ inclusion threshold ------
      0.014   15.0   0.1      0.029   13.9   0.1    1.5  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.3   0.0   5.4e-52   3.2e-48       1     258 [.       6     272 ..       6     274 .. 0.89

  Alignments for each domain:
  == domain 1  score: 164.3 bits;  conditional E-value: 5.4e-52
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 v+i +++r+p+ +++g+++d++  ++l++al +l+++  ++ +++ ev+ G+vl+   + n++r+a+l++++p ++pa  + ++c+ gl+a  ++a++i
  EGE27454.1   6 VAILGGNRIPFARSNGVYADANNIDMLTAALDGLVARFDLADKQIGEVVAGTVLKHSRDLNLTREAVLNTQLPATTPAYDISQACGTGLQAAFAVANKI 104
                 7899*********************************************************************************************** PP

                 HTTSHSEEEEEEEEESTTS-EEETCTTT.............TGGSSSSEEEEEHHHHHHTE......ETTTTSEHHHHHHHHHHHHT--HHHHHHHHHH CS
  Thiolase_N 100 aageadvvvagGvEsmsnaptaestdvr.............sglklgdekakdllipdgla......dafneehmGltaenlakkykisReeqdefAvk 179
                 a g +d  +agG+ + s+ap+a    +r             +     +  a  ++ p+ l       +  +   mG +   +a +++isR++qde A +
  EGE27454.1 105 ALGLIDNGIAGGTDTTSDAPIALGDGLRkpllrlgnaktakQ-----KLSALSTINPKDLLafpqngEPRTRLSMGEHQAITALEWNISRTDQDELAYN 198
                 ************************888899999987544332.....333334444444440111115567789************************* PP

                 HHHHHHHHHHTTTTTTTBE-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTT...SS-BTTSB--BEEEEEEEEEEE CS
  Thiolase_N 180 shqkaaaaqkagkFkdeivPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkke...GtvtAgnasqisDGaaavllms 258
                 shq+ a+a ++g F+d i P k         ++kd+ +r+++t+ekLa+lkpaF k+    t+tAgn+ +++DGa+ vll s
  EGE27454.1 199 SHQNLAQAYESGFFDDLITPYKG--------LTKDNNLRPDTTLEKLASLKPAFGKKnanPTMTAGNSTPLTDGASVVLLSS 272
                 ****************9977654........5799*******************8865567******************987 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.1   4.4e-35   2.6e-31       4     123 .]     284     427 .]     281     427 .] 0.89

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 4.4e-35
                 SEEEEEEEEEE--.......GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G.................GGBSTT--HHHH CS
  Thiolase_C   4 lakirsyaevgvd.......peilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl.................ekvNvnGGaial 78 
                 la+i++ ++++vd        e l ++Paya++k+lk+aglt++d d++Ei+EAFa+q+L+++ a + ++                 +k+NvnG ++a 
  EGE27454.1 284 LAYITHQQTAAVDfigkeglTEGLLMAPAYAVPKMLKRAGLTLQDFDFYEIHEAFASQVLSTLAAWEDETfcktrlgldaplgsidrSKLNVNGSSLAA 382
                 5666666666555333322236799*************************************99999888999************************** PP

                 -B-TTTHHHHHHHHHHHHHHHCTTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C  79 GHPlGasGaRivvtllselkkeggklgvaalCigggqgvalviek 123
                 GHP+ a+G Ri++t+++ l ++g+  +++++C++ggqgv +++e+
  EGE27454.1 383 GHPFAATGGRILATAAKLLAQKGSGRALVSICAAGGQGVVCILER 427
                 ***************************************999985 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   4.9e-06     0.029     162     206 ..      77     121 ..      71     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.9e-06
                    HT--SSEEEEESGGGHH.HHHHHHHHHHHHTTS-SEEEEEEEE--- CS
  ketoacyl-synt 162 lglrGpsvtvdtACsSs.lvavhaavqslrsgeadvalaGGvelll 206
                    l ++ p++ ++ AC ++  +a ++a +++  g +d  +aGG++++ 
     EGE27454.1  77 LPATTPAYDISQACGTGlQAAFAVA-NKIALGLIDNGIAGGTDTTS 121
                    566789999********66666666.****************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3603.92
//
Query:       EGE27455.1  [L=455]
Description: 3-ketoacyl-(acyl-carrier-protein) reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-46  157.5   2.8    2.8e-44  151.4   1.0    2.6  3  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      5e-37  127.3   2.7    1.1e-36  126.1   1.3    2.0  2  adh_short        short chain dehydrogenase
    5.6e-17   62.2   0.7    2.5e-16   60.1   0.7    2.0  1  KR               KR domain
    2.3e-05   24.0   0.1    6.2e-05   22.6   0.1    1.8  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0013   18.1   0.0     0.0037   16.6   0.0    1.7  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
  ------ inclusion threshold ------
      0.048   13.0   0.1       0.12   11.7   0.1    1.8  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.05   13.4   0.4       0.26   11.1   0.2    2.3  2  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.29   7.5e+02     143     165 ..     149     170 ..     126     177 .. 0.84
   2 !    5.0   0.0    0.0059        15     186     228 ..     163     205 ..     153     208 .. 0.83
   3 !  151.4   1.0   1.1e-47   2.8e-44       1     230 [.     226     448 ..     226     449 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.29
                   HHHHHHHHHHHHHHHHHGGGTEE CS
  adh_short_C2 143 aaKaalealtrylAvelgpkgiR 165
                    a  a+ ++++++A+e+ + gi 
    EGE27455.1 149 LAQRAVLGFVKSIAKEFKR-GIS 170
                   6778999********9987.665 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0059
                   HHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEE CS
  adh_short_C2 186 delleelearaplgrlgtpeevaeaalfLasdeasyitGqtlv 228
                   +e+++ + a+    + g  +e a++  f++s +++y++Gq ++
    EGE27455.1 163 KEFKRGISAQVIYVQKGAESELAHTLEFFMSAKSAYVSGQPIY 205
                   56666677777777889999********************987 PP

  == domain 3  score: 151.4 bits;  conditional E-value: 1.1e-47
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Ga +gIG+aiA+ la+ Ga+v + d+ +++  +++++a ++g  +l++D+t +++ e++v++     g+lD++v+nag+ ++  + ++++s+++++ 
    EGE27455.1 226 GASRGIGQAIAEVLARDGAKVYCLDVPDSL-PNLQKVAGQIGGYALPLDITAKDAGEQIVRA----CGTLDGVVHNAGVIRD--KTLAKMSEDKWNL 315
                   999**************************9.89******************99998877765....89**************..************* PP

                   HHHHHTHHHHHHHHHHHH..HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHH CS
  adh_short_C2  98 aldvnlyslfllakaalp..lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleel 192
                   ++++nl +++++  ++++   + e ++iv++ss+++  +  +++ y+++Ka++++l+ + A+ + +   ++Nav+pg+i+T+++ +i+   +++e+ 
    EGE27455.1 316 VMNINLGAIHRVNDYLINhhGLGEAARIVCVSSISGIAGNLGQSNYATSKAGVIGLVEATAKVFKDSARTINAVAPGFIETKMTGQIP--FAIREAG 410
                   ******************5455666**************************************************************9..7899*** PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEES CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvD 230
                   +++  + + g+p +vae++++L+s++a + +G+++ v 
    EGE27455.1 411 RRMNSMSQGGEPVDVAETIAWLLSPKAGGLNGNVVRVC 448
                   **********************************9886 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.25   6.5e+02     154     177 ..     152     174 ..     146     189 .. 0.79
   2 !  126.1   1.3   4.4e-40   1.1e-36       1     189 [.     220     401 ..     220     405 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHGGGTEEEEEE CS
   adh_short 154 aavagltrslakelaptgirvnav 177
                  av g+++s+ake+++ gi+ +++
  EGE27455.1 152 RAVLGFVKSIAKEFKR-GISAQVI 174
                 5899999999999987.5666555 PP

  == domain 2  score: 126.1 bits;  conditional E-value: 4.4e-40
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEES..CHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdr..seekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97 
                 k +lvtGas+GIG+aia+ la++Gakv+++d   s  +l++va +++      +a+++D+t +++ e++v+++    g+ld +v+NAG+ ++++ +++s
  EGE27455.1 220 KKILVTGASRGIGQAIAEVLARDGAKVYCLDVpdSLPNLQKVAGQIGG-----YALPLDITAKDAGEQIVRAC----GTLDGVVHNAGVIRDKTLAKMS 309
                 689**************************7651155678888888885.....89******777777777766....********************** PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 e++w+ v+++Nl ++  +   ++++   ++++rIv vsS+ g  ++ g++ Y++sKa+v+gl+++ ak ++++  ++navaPG+++T+m+ +
  EGE27455.1 310 EDKWNLVMNINLGAIHRVNDYLINHHGLGEAARIVCVSSISGIAGNLGQSNYATSKAGVIGLVEATAKVFKDSARTINAVAPGFIETKMTGQ 401
                 *************************889*************************************************************976 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.7   9.7e-20   2.5e-16       4     154 ..     223     366 ..     221     387 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 9.7e-20
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EE..EE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaev..evvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 l+tG+  g+G+++a+ la++ga+   l   +          + +l++   ++   ++++D++ kda e++++++     ++ Gv+h Agv+rdk+l++m
  EGE27455.1 223 LVTGASRGIGQAIAEVLARDGAKVYCLDVPD---------SLPNLQKVAGQIggYALPLDITAKDAGEQIVRACG----TLDGVVHNAGVIRDKTLAKM 308
                 9*********************988876666.........344444443333116889***************96....999***************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNa 154
                 ++++++ v++  + +++ ++ +l +     +   +v++SSi+g+ g+ gq+nYa+  a
  EGE27455.1 309 SEDKWNLVMNINLGAIHRVNDYLINhhglGEAARIVCVSSISGIAGNLGQSNYATSKA 366
                 *******************999988788889999*******************98765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   2.4e-08   6.2e-05       1      89 [.     222     314 ..     222     423 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.4e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrsalerlfkee.qpdavihlAavggvaassedpadfie 89 
                 ilVtGa+  iG+a+++ l++ g +v +ld   s  n ++ +         ld+t ++a e++++     d v+h A+v   ++ ++  +d ++
  EGE27455.1 222 ILVTGASRGIGQAIAEVLARDGAKVYCLDVPDSLPNLQKVAGQiggYALPLDITAKDAGEQIVRACgTLDGVVHNAGVIRDKTLAKMSEDKWN 314
                 8******************************9999988877779**99***************99999*******996655555555455333 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06    0.0037      12      66 ..     195     249 ..     187     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
                    --SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE CS
  THF_DHG_CYH_C  12 eeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLleknatVtvc 66 
                    ++a+++  p   ++  ++t+ +l+gkk++v G+s+ +g+++a +L++++a V ++
     EGE27455.1 195 KSAYVSGQPIYLTKAATQTHATLQGKKILVTGASRGIGQAIAEVLARDGAKVYCL 249
                    56667777777778888999******************************99876 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   4.9e-05      0.12      26      70 ..     209     254 ..     185     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.9e-05
                   TCCGSBS-GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  26 ekallgkelsgktvGiiGlGr.IGqavakrlkafgmkviaydrskk 70 
                    ++ +  +l+gk++ + G+ r IGqa+a++l+  g+kv++ d+  +
    EGE27455.1 209 AATQTHATLQGKKILVTGASRgIGQAIAEVLARDGAKVYCLDVPDS 254
                   45566779************88******************997654 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   3.4e+03      50      63 ..     145     158 ..     124     164 .. 0.73
   2 ?   11.1   0.2    0.0001      0.26      33      61 ..     210     240 ..     195     251 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
                      SHHHHHHHHHHHHS CS
  Eno-Rase_NADH_b  50 tGYGLAsriaaafg 63 
                       G+ LA r ++ f 
       EGE27455.1 145 IGFSLAQRAVLGFV 158
                      58889999888886 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0001
                      S-----...-SEEEEESTSSHHHHHHHHHHH CS
  Eno-Rase_NADH_b  33 qkkiek..gpkkvLviGaStGYGLAsriaaa 61 
                      +++++   + kk+Lv GaS G G A   ++a
       EGE27455.1 210 ATQTHAtlQGKKILVTGASRGIGQAIAEVLA 240
                      2222223357*************98665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3386.77
//
Query:       EGE27456.1  [L=298]
Description: MaoC-like dehydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-15   56.4   0.2    5.1e-15   55.1   0.1    1.6  2  MaoC_dehydratas  MaoC like domain
     0.0005   20.2   0.4     0.0042   17.2   0.1    2.5  2  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase


Domain annotation for each model (and alignments):
>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.38   3.4e+03      81     105 ..     130     155 ..     120     176 .. 0.56
   2 !   55.1   0.1   5.7e-19   5.1e-15      18      97 ..     191     267 ..     168     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.38
                      EEEEE-S--BTTCEEEEEEEEEE.EE CS
  MaoC_dehydratas  81 ikvrFtkpVlpgdtlkvelevvg.kr 105
                      +++ F+  V + d++  e + +   r
       EGE27456.1 130 QQFDFVTSVWVADEMVWEGVSTYlSR 155
                      55666666666666666555555222 PP

  == domain 2  score: 55.1 bits;  conditional E-value: 5.7e-19
                      EEHHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEEE-S--BTTCEEEE CS
  MaoC_dehydratas  18 vteadialyalvsgDlnpiHvdpefAkkagfggpIahGmltlaivaklveeelgdnvvarvgeikvrFtkpVlpgdtlkv 97 
                      v e+  ++ya vsgD+n iH+ p  A+++gf+++IahGm t a + +++++++    +a +++ +v+F  pV+ +++++ 
       EGE27456.1 191 VEEDIGRRYAFVSGDFNLIHLHPLSARVFGFPKAIAHGMWTKARSLAMIARHFEL--PAAYRM-DVSFKFPVFLPSKIEL 267
                      44666689***********************************************..788876.6*********999875 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.7e-07    0.0042      45     116 ..      62     136 ..      36     147 .. 0.81
   2 ?   -0.6   0.0      0.16   1.4e+03      20      49 ..     197     226 ..     188     250 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.7e-07
  MaoC_dehydrat_N  45 rsliaPptflivlatkap.ell..ealgidlsrllhgeqefeyhepiraGDelttesriadvydkkgvGalefiv 116
                      ++  +P t++ vl+ + + +++  ++++  + +l+h e++++ h+ i   ++++ + r++ +++ +   +++f++
       EGE27456.1  62 DDGRVPATYFAVLSQTLQmNMMakPDFPFAMLGLVHVENSVTQHRVIFDTETVRLSVRLNNLRTHDKGQQFDFVT 136
                      56789****999998555578845555666********************************9954214555554 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.16
  MaoC_dehydrat_N  20 refakavgetnpayldeeaaraagyrslia 49 
                      r++a   g+ n ++l +  ar  g+ + ia
       EGE27456.1 197 RRYAFVSGDFNLIHLHPLSARVFGFPKAIA 226
                      8999999********999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2346.92
//
Query:       EGE27457.1  [L=419]
Description: beta-lactamase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-38  130.4   2.1    6.2e-37  127.6   2.1    1.9  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   2.1   3.5e-41   6.2e-37       5     314 ..      10     401 ..       6     412 .. 0.76

  Alignments for each domain:
  == domain 1  score: 127.6 bits;  conditional E-value: 3.5e-41
                     HHHHHHHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTSTTCTTGGGTTEBHHHH CS
  Beta-lactamase   5 vrelmaqggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylPefagpgkgkiTlrdL 99 
                     +++l+ + + +G a+++++dg++v++++ G+  +  + p++ +tl   +S+ K + a++++ lv eG+ld+ +++s+y+ efa++gk +i+l+d+
      EGE27457.1  10 LQALQFDDAPAGGALVIYKDGQEVVNTATGL--ALPNLPWSSQTLSVNFSIGKGVMATLIAVLVSEGLLDYEARISQYWHEFAQNGKTDIRLKDV 102
                     55555555668*****************995..55566********************************************************* PP

                     HTTHSSCSSSSTSTTCTSHHHTH....HHHHHHHHHSBSSSS.....TTSCEE-SHHHHH.HHHHHHHHHHTSHHHHHHHHHTTTT......... CS
  Beta-lactamase 100 ltHtsGlpdlfasdlleeaaada....aellralatlppkya.....pGtkwgYsntgyg.llgellekvtgrsleqllreeilrp......... 175
                     l+Ht+Gl    ++  + + +a      +e+l+++a++p   +        + +Ys++  g +lg l+e+vt+++l q+l +++++p         
      EGE27457.1 103 LSHTAGL----FNISVVTTDAEVlldwDEMLKRIAAMPTSTPksqeeYHYASAYSALVLGwVLGGLVERVTDMTLNQALNQYLAKPlgvidelyf 193
                     *******....666666666666678899999999999888877676455566*********************************555555555 PP

                     ....................................TTSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHC.................. CS
  Beta-lactamase 176 ....................................Lgmkdtelgppesgdprdaagytgngpearappanlpaeae.................. 216
                                                                                                 +                  
      EGE27457.1 194 gvdadlidkiakperyfgeipkkntprrkpilkpdsE---------------------------------------Tllqtlthlptsplwrasl 249
                     5555555555555555555555555555555555550.......................................1555555555555555555 PP

                     .................................................TTTBEEEEHHHHHHHH.....HHHHHCCSSSSHHHHHHHHHHHTSE CS
  Beta-lactamase 217 .................................................gagglistardlarfl.....glalegglllsaetlaqltaklssg 257
                                                                      +a++++s+a+ lar +     ++  +g+ + s+ + + ++a +  g
      EGE27457.1 250 gdkpittahvnrlyfdtarmnltnyknalmpnakdgleyhrsdvlmatiPAANGVSSANALARIYamhanDGIWQGRTVISKDVVSCMRAIQTDG 344
                     5555555555555555555577777777777777777777*************************777776666667777777777777777777 PP

                     EEECTTEEEECECSSEEE.EECCH.TEEEEEEESTEEEEEEEECGGTEEEEEEESBCSS CS
  Beta-lactamase 258 ttrpagiraglglGwvla.dktga.pgtfghtGggygtyvfvdpeanlvvavltnrdpp 314
                     ++++ + + ++ +G+++    + + p ++gh G + g++ f  p ++l +a+  n d++
      EGE27457.1 345 FDAVMPANMRWRMGFHRLfSLQ-DvPDGYGHMG-YNGSVAFCEPSRRLSFAFIHNFDTT 401
                     7777777777777765430333.25999*****.******************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3017.12
//
Query:       EGE27458.1  [L=178]
Description: hypoxanthine phosphoribosyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-25   87.2   0.2      1e-24   86.9   0.2    1.0  1  Pribosyltran  Phosphoribosyl transferase domain
    1.1e-05   25.0   0.5    1.4e-05   24.6   0.5    1.1  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.2   1.1e-28     1e-24      10     158 ..      15     163 ..      10     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 1.1e-28
                   -EEEEEEETTEEEEEE..--GGGEEEEEEETTTHHHHHHHHHHS..TT-EE-EEEEEE-TTT--EE.........EE----TTSEEEEE-SEESSSH CS
  Pribosyltran  10 aildavarlaaeilee..yngkpdvvvgiargGvpfakiladeL..evplayvrkvkyrpdgseeaargssdes.rlledpagkkVliVDDildtGg 101
                   +i+ +v++l  +i+ +  + +k+ v+vg +rg+v+f  +l +++  + +++++ +++y ++++ +   + +  +  l +++ gk VliV+Di+d+G+
    EGE27458.1  15 QIATKVKELGVQISTHyqDSNKELVLVGLLRGSVIFMADLCRQIdkTHEIDFMTVSSYINKTTVSSGDVKI--IkDLDSEIQGKDVLIVEDIIDSGR 109
                   556688888888888777899***********************77677***********99999875443..33699******************* PP

                   HHHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHHHH-TTS.....EEEEEEE-SEE-T CS
  Pribosyltran 102 TllaalelLkekgpeevriavlvdkpateeevdknakrvfslspdnfvavvgfelds 158
                   Tl +++e+L  ++p +++i++lv kp+++e +   ++ +f+++   ++++vg++ld+
    EGE27458.1 110 TLSKVVEILQTREPNSIEICTLVSKPSRREIPMTVKFCGFEVE---DKFIVGYGLDY 163
                   ****************************************999...99999999987 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.5   1.6e-09   1.4e-05      52     161 ..      20     133 ..       7     142 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.6e-09
     UPRTase  52 ttplgkeysgel.ldeekialVpilRaGeg.meealrel..lpearvghlglqreeet..lepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlL 144
                  + lg + s+++  ++++++lV +lR+    m++ +r++  + e+ ++ +  + +++t     v +++ L ++i+ + vl+++ +i +G+++ +++++L
  EGE27458.1  20 VKELGVQISTHYqDSNKELVLVGLLRGSVIfMADLCRQIdkTHEIDFMTVSSYINKTTvsSGDVKIIKDLDSEIQGKDVLIVEDIIDSGRTLSKVVEIL 118
                 445666666644044569********8876255555555223345677777777887722445899********************************* PP

     UPRTase 145 kergvgeekIlvlsvla 161
                 + r+   ++I ++++++
  EGE27458.1 119 QTRE--PNSIEICTLVS 133
                 **65..55666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1403.70
//
Query:       EGE27459.1  [L=133]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 967.73
//
Query:       EGE27460.1  [L=632]
Description: dihydroxy-acid dehydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-217  723.9   6.2   1.2e-217  723.7   6.2    1.0  1  ILVD_EDD  Dehydratase family


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  723.7   6.2  6.6e-222  1.2e-217       1     517 []      34     624 ..      34     624 .. 0.94

  Alignments for each domain:
  == domain 1  score: 723.7 bits;  conditional E-value: 6.6e-222
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 kpii+ians++++vp+hvhlk++++ v++++e+aggv+ efnti+v+Dgiamg++gm ysLpsR+liadsve+m++a+++Dalv+is+CDKi+Pg+lma
  EGE27460.1  34 KPIIAIANSFTQFVPGHVHLKDMGQLVAREIEKAGGVAKEFNTIAVDDGIAMGHSGMLYSLPSRDLIADSVEYMVNAHCADALVCISNCDKITPGMLMA 132
                 8************************************************************************************************** PP

    ILVD_EDD 100 aarlniPaifvsgGpmea..........gkkk............kldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealG 176
                 a+rlniP+ifvsgGpmea          g  +            ++   + ++a+ ++a++ +s+++++++e++acp++GsCsgm+TAn+m+cl+ealG
  EGE27460.1 133 AMRLNIPTIFVSGGPMEAgkvlastlvdG--SnvhetvvndqgqSIRKLDLVDAMIDAADDLVSDSDVQTVENSACPTCGSCSGMFTANSMNCLTEALG 229
                 ******************55555555551..05555667777764555566699********************************************* PP

    ILVD_EDD 177 lslpgsasipatsaerkelaeeagkrivelv.......ekdlkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpll 268
                 lslpg++s+ at+++rkel+ +ag+ ive++       ++++ pr+i+tk+afeNA+ +++a+GGStN++lHllA+A+eagv ++++d+d+lsr vp+l
  EGE27460.1 230 LSLPGNGSLLATHTKRKELFLKAGRMIVEITkrhyeqgDDSVLPRSIATKSAFENAMSLDIAMGGSTNTILHLLAAANEAGVAFKMADIDRLSRLVPCL 328
                 ******************************9888765444489******************************************************** PP

    ILVD_EDD 269 aklkP.sgkydmedlhraGGvpavlkeLlkagllhgdvltvtgktlaenleeaev.....................................keqdvir 329
                  k++P ++ky+med+hraGGv+ +l+eL++agll++++ tv++ tl+++l++ +v                                     +e+ +ir
  EGE27460.1 329 SKVAPaTQKYHMEDVHRAGGVMGILAELDRAGLLDTSLPTVHSPTLKDALATWDVmnpdntqaralyiaapggvrttqafsqnkeypnldlnRESGCIR 427
                 *****99****************************************9998855569999999************************************ PP

    ILVD_EDD 330 plekplskegglavLkGnLapeGavvKtsaveeellkfegpArvfdseeeaveailkgkikagdvvviryeGPkGgpGmpEmlkptsallgkglgkkva 428
                 ++++++s++gglavL Gn+a++G+vvKt++v++++l+f+g+Arvf+s+++aveail+++i agd+v+iryeGPkGgpGm+Eml+pts+l++kglgk +a
  EGE27460.1 428 DVKHAYSQDGGLAVLFGNIAERGCVVKTAGVDDSILTFTGKARVFESQDDAVEAILADQIIAGDIVIIRYEGPKGGPGMQEMLYPTSYLKSKGLGKACA 526
                 *************************************************************************************************** PP

    ILVD_EDD 429 litDGRfSGaskglvighvsPEAaegGpialvedGDiieidiekrtlelevseeelaaRra........awkpekkvkt.rgllakyaklvssaseGA 517
                 l+tDGRfSG+++gl+igh sPEAaegG+i+lvedGD+i+idi++rt++l+v+ +el++Rr+        awkp+++ ++ +++l++ya++++sa++GA
  EGE27460.1 527 LLTDGRFSGGTSGLSIGHASPEAAEGGAIGLVEDGDTIHIDIPNRTINLAVDPTELQKRREamqvrgkhAWKPANRIRHvSQALRAYAAMTTSADTGA 624
                 ************************************************************75888888888884444455*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4379.05
//
Query:       EGE27461.1  [L=566]
Description: choline/glycine betaine transporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-183  610.8  44.2   1.7e-183  610.6  44.2    1.0  1  BCCT      BCCT, betaine/carnitine/choline family transporter


Domain annotation for each model (and alignments):
>> BCCT  BCCT, betaine/carnitine/choline family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  610.6  44.2  9.2e-188  1.7e-183       1     484 [.      38     519 ..      38     520 .. 0.99

  Alignments for each domain:
  == domain 1  score: 610.6 bits;  conditional E-value: 9.2e-188
        BCCT   1 vflvslliivlfvllalvfpealeevlsslnswilekfgwlylllvllflvfllvlafskygkikLGkddekpefstlsWfamlfaaglgigllfwgva 99 
                 vf+vs++++++f+l++++f+e++ +v+++++++i+++fg+  ++l++l l f+++la+s+yg+i+LG+++e p +s+ sW+ mlf+ag+gigll+wg+a
  EGE27461.1  38 VFAVSAFLVIAFMLYGAIFSEQAGQVFGQMQQFISQNFGFGLVILMNLALAFCVYLALSRYGDIRLGHQTEVPAYSFGSWIGMLFSAGIGIGLLYWGTA 136
                 89************************************************************************************************* PP

        BCCT 100 EplahylspppgaeagteeaaqeAlaytffhwGlhaWaiyalvalalayfayrkglpltissalypllgeringllgkvvDvlavlatvfGvatslGlg 198
                 Epl+h+++ pp ae++t +aa eA++++f+hwGlhaWa+ya+val layf+yr+glpl+++s+l pl+g+ri+g +g++vD+lav++t+fGv+tslGlg
  EGE27461.1 137 EPLYHFAA-PPRAEPETVNAAVEAMQISFLHWGLHAWAVYAVVALSLAYFHYRRGLPLSVRSVLFPLIGKRIYGGWGHTVDILAVFGTMFGVVTSLGLG 234
                 ********.88889************************************************************************************* PP

        BCCT 199 vlqinaglselfgieesltvqlaiivvitalatvsavsGldkGikrlSnlnlvlalllllfvllvGptlfilntfvqslgdylqnlvalslatdaaeea 297
                 v+q+++gl +l+g++ slt++l +i+ it++a++s+++GldkG+krlS+++++ +l++l+f++l+Gpt fi+++f++++g+y+ nl++l l+++a+ ++
  EGE27461.1 235 VMQLETGLAQLWGVTPSLTLKLGLIAGITVCAALSVMAGLDKGVKRLSDITILATLAMLAFMILAGPTRFIFDSFIENIGNYAGNLITLGLWNEAYVDT 333
                 *************************************************************************************************99 PP

        BCCT 298 eewlasWTvFyWawwiawapfvGlFiAriSrGRtiRefilgvllvptlvtflwftvlGgtaielelegeaelaeaaeasveaalfalleqlplgsilsv 396
                 + w++sWT+FyWaww++w+pfvG+FiAriSrGRtiRef++gvl+vp+l+ flwft +Gg+a+++e+ g+  ++ea++a+  +a+f+++e++p+++ l+v
  EGE27461.1 334 D-WQSSWTIFYWAWWVSWSPFVGIFIARISRGRTIREFLFGVLFVPMLLLFLWFTTFGGVAVHMEMLGSYGFVEAVQADYGSAIFRFIEHYPFTKGLMV 431
                 9.************************************************************************************************* PP

        BCCT 397 lavvliiiffvTsaDSatlvlatltsggdenpprkqrvfWgvllgavaavlllagglealqsasiiaalPftlvlllmvvsllkalre 484
                 +++++i+++fvTsaDSa+lv+++lt+gg+++pp+ qr+fW + +g++aavll aggl alq+a+i+a+lPf++v+++m++ l++ l +
  EGE27461.1 432 VIMIMIVLWFVTSADSASLVVDMLTAGGETDPPKIQRLFWVTSEGIIAAVLLAAGGLGALQAAAIVAGLPFAIVVFVMMYCLWRGLGR 519
                 ************************************************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4239.37
//
Query:       EGE27462.1  [L=415]
Description: hypothetical protein EA1_02327 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-46  156.9  40.7    9.9e-46  156.4  40.7    1.2  1  AI-2E_transport  AI-2E family transporter
  ------ inclusion threshold ------
       0.13   12.3   0.3       0.13   12.3   0.3    3.9  5  Phage_holin_3_3  LydA holin phage, holin superfamily III
          8    6.4  10.4       0.57   10.1   0.7    3.0  2  PetG             Cytochrome B6-F complex subunit 5


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4  40.7   1.7e-49   9.9e-46       5     326 ..      14     347 ..      10     348 .. 0.89

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 1.7e-49
  AI-2E_transport   5 lvllllllalypfiselllplliAlvlayllnpvvkfLkk........rgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayi 90 
                       + +l+ll +y++i  ++l +++++++a+ l  +v++L+         +++++ +  ++vl+ l+++l  l +l++ +l+ ql++l   +p+ +
       EGE27462.1  14 VAVVLMLLSFYYLIH-VWLIVFASILMAVWLLSLVEYLTLipwvgqylKKLPHGILLTMVLMGLVGVLSTLAALFGHELALQLENLKLLVPQAF 106
                      567888899999999.7777777777777666666666322223333489*****************************************666 PP

  AI-2E_transport  91 dslqnilnelpslleelen......liqalkqslskilsnilssilnsllsllasllglilslvlvllllffllldgeklrqgilkllpervre 178
                      +  ++ l++  +  +  ++      ++++l+++ ++ l+++ +    +l ++l+  ++++ +lv++ ++  fl      +r+ ++ ++p++ r+
       EGE27462.1 107 EYMNQYLTQYLQTHPAVYEwlagleWARELRDNPQQFLTRFSDGAMAYLPTYLGGMVSGMGTLVVITIIGLFLAISPSVYRRSFVAMVPKDSRD 200
                      6666666665555555553356689********************************************************************* PP

  AI-2E_transport 179 rvkailrelektlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltggikevlivlivvllvqli 272
                      +++ +l +++++++++l gq++v++++g++++i l+++g+p+al l+++++l++++P++G+++++ipi ++ l++   k++l+v +++++vq++
       EGE27462.1 201 KAEYLLDRSYRSMQQWLLGQLVVMAFVGIATGIALWLMGIPFALALGFIAFLLDFVPVLGPWLSAIPILLLTLIVSP-KMLLWVALMIVVVQQL 293
                      *******************************************************************8888888888.**************** PP

  AI-2E_transport 273 egnilePklmgkrlglhplvillsllaggklfGlvGlilavpltavikaileay 326
                      e ++++P++  + ++l+p+++lls+++ g++ G++G+ la pl++++ ++++++
       EGE27462.1 294 ESYVISPIVQNRMVDLPPVALLLSQVIMGSITGILGIALATPLMVMVIVWVQVL 347
                      **************************************************9875 PP

>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.2      0.26   1.5e+03      41      68 ..      14      41 ..       9      55 .. 0.74
   2 ?   -1.4   0.1      0.43   2.6e+03      59      75 ..      77      93 ..      68      96 .. 0.65
   3 ?   -3.5   0.2       1.9   1.1e+04      13      54 ..     163     166 ..     157     178 .. 0.44
   4 ?   12.3   0.3   2.3e-05      0.13      30      65 ..     216     251 ..     199     252 .. 0.87
   5 ?    0.4   0.1      0.12   7.4e+02      31      49 ..     315     333 ..     309     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.26
  Phage_holin_3_3 41 vGllvfllceelglsqlltlaiaglsGy 68
                     v+++++ll++++ +  +l ++++ l ++
       EGE27462.1 14 VAVVLMLLSFYYLIHVWLIVFASILMAV 41
                     5677777888877777777777776654 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.43
  Phage_holin_3_3 59 tlaiaglsGylGarali 75
                     +++++ l++ +G++++ 
       EGE27462.1 77 VGVLSTLAALFGHELAL 93
                     45666677777776665 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.9
  Phage_holin_3_3  13 vsylmrakkgrrrfsikellleivvSgfvGllvfllceelgl 54 
                      vs                                      g+
       EGE27462.1 163 VS--------------------------------------GM 166
                      32......................................22 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 2.3e-05
  Phage_holin_3_3  30 ellleivvSgfvGllvfllceelglsqlltlaiagl 65 
                       ll+++vv +fvG+ +++++  +g+++ l+l+++++
       EGE27462.1 216 WLLGQLVVMAFVGIATGIALWLMGIPFALALGFIAF 251
                      389******************************996 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.12
  Phage_holin_3_3  31 llleivvSgfvGllvfllc 49 
                      ll +++ +  +G+l+ +l+
       EGE27462.1 315 LLSQVIMGSITGILGIALA 333
                      7899999999999999886 PP

>> PetG  Cytochrome B6-F complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   3.2      0.25   1.5e+03       8      21 ..      66      79 ..      62      88 .. 0.52
   2 ?   10.1   0.7   9.5e-05      0.57       6      24 ..     159     180 ..     157     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.25
        PetG  8 GiVLGLvpVTlaGL 21
                Gi L +v   l+G 
  EGE27462.1 66 GILLTMVLMGLVGV 79
                55555555555543 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 9.5e-05
        PetG   6 LlGiVLG...LvpVTlaGLFva 24 
                 L G+V G   Lv++T++GLF a
  EGE27462.1 159 LGGMVSGmgtLVVITIIGLFLA 180
                 56888663357*********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1603  (0.0894082); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 2920.73
//
Query:       EGE27463.1  [L=216]
Description: hypothetical protein EA1_02332 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.4   0.1       0.24   11.2   0.0    1.6  2  DUF3142   Protein of unknown function (DUF3142)


Domain annotation for each model (and alignments):
>> DUF3142  Protein of unknown function (DUF3142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.4e-05      0.24      34      75 ..      22      63 ..       3      94 .. 0.83
   2 ?   -1.7   0.0      0.12   2.1e+03      27      58 ..     132     164 ..     119     206 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.4e-05
     DUF3142 34 WqaqGltvagleiDhDaasarLpayaafLraLrsalpaelkL 75
                ++ + +++a l iD+D     L++y ++  +L++++p + +L
  EGE27463.1 22 FRIHNVKLAQLTIDFDLPQMFLAHYDQLADELKARIPLTPQL 63
                56677899*****************************88776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.12
     DUF3142  27 llellaeWqaqG.ltvagleiDhDaasarLpay 58 
                 + +  a+Wq +G ++v     ++D  s  L + 
  EGE27463.1 132 IHQEAARWQMTGnVNVLFKHTNYDLVSIDLEDN 164
                 456667777777223333345555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1550.24
//
Query:       EGE27464.1  [L=140]
Description: histidine triad (HIT) protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-23   81.4   1.3    8.7e-23   80.9   1.3    1.2  1  HIT       HIT domain
    1.4e-08   35.2   1.1    1.8e-08   34.9   1.1    1.1  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   1.3   9.7e-27   8.7e-23       1      96 [.      16     111 ..      16     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 9.7e-27
                 TGCC-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC- CS
         HIT   1 ekeipstvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprr 96 
                 ++e p++ vyedd++laf di p a gh+Lv+pk  + el+dl+ +  ++++++++kv+ka +++++++g++ v  n ++agqsv h+H+H++p +
  EGE27464.1  16 RGELPCHRVYEDDQTLAFMDIMPVAVGHVLVVPKYPAVELSDLPLQYAQAVIATAQKVMKAQRQVLQTQGITQVQINHPEAGQSVLHYHMHLVPAH 111
                 5799*****************************************************************************************976 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   1.1     2e-12   1.8e-08       3     105 ..      10     113 ..       8     121 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2e-12
                 HHHHHHTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T..-EEEEE--SCCCT--S-S--EEE CS
      DcpS_C   3 vfnilakgkepervvyedekfvvlkDikpkaklhllvipkrdikslrdLtkehlpllkemrekakkvieekyne..vdaeelrvgvhyqPsvyhlHlHv 99 
                 +f ++ +g+ p   vyed++++++ Di p a  h+lv+pk    +l dL  +  + + +  +k+ k+ ++  ++  + + ++    ++ +sv h H+H+
  EGE27464.1  10 IFAKILRGELPCHRVYEDDQTLAFMDIMPVAVGHVLVVPKYPAVELSDLPLQYAQAVIATAQKVMKAQRQVLQTqgITQVQI-NHPEAGQSVLHYHMHL 107
                 7899999*9****************************************555555555554444444444444421334433.4578999********* PP

                 EE.... CS
      DcpS_C 100 isldfe 105
                 +   f+
  EGE27464.1 108 VPAHFS 113
                 986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1013.12
//
Query:       EGE27465.1  [L=257]
Description: ferredoxin-NADP reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-12   46.0   0.0    1.1e-11   45.4   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.9e-06   28.2   0.0    6.2e-06   26.5   0.0    1.8  2  FAD_binding_6  Oxidoreductase FAD-binding domain
  ------ inclusion threshold ------
      0.099   12.8   0.0       0.43   10.7   0.0    2.0  3  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   1.8e-15   1.1e-11       1     107 [.     112     228 ..     112     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1.8e-15
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTT.....EEEEEEEESSCTTTSSSEESSHHHHHHHHHHH.... CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpg.....rlkvvavvsreeagweggkgrvqdalleells.... 87 
                    m+a+GtG+aP++s+ r      ++  kv+lv+G+r+ +dl+yr+ +e+   + +      r k++++     +++ + +grv+d +    l     
     EGE27465.1 112 MLATGTGLAPFLSLCRDPEVY-ERFEKVILVHGVRHVNDLAYRDFFENQLPNDEIfgewiREKFIYY-PTVTRDEFHHTGRVTDLIKSGKLFddig 205
                    9***************99887.788*******************99987554444778897777777.6666666788******998744445899 PP

                    ...HSSTTEEEEEECSHHHHHHH CS
  NAD_binding_1  88 ...lkkeethvyvCGppgMikav 107
                       ++k+++ v++CG  +M +++
     EGE27465.1 206 lpvMNKDDDRVMICGSMAMNADT 228
                    9******************8876 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     1e-09   6.2e-06      13      96 ..      16      98 ..       8     101 .. 0.85
   2 ?   -1.6   0.0       0.6   3.6e+03      29      41 ..     103     115 ..     100     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1e-09
                   TEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEE.EEEE-S CS
  FAD_binding_6 13 dtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtlei.kGPlGk 96
                   + + f++k+ + ++ l+++ G++ ++ + ++g+   R+Y+ i+s+n   ele+   ++p+G +++ L+++++gd l i k P+G+
     EGE27465.1 16 NDSLFTIKTTRGDS-LRFRNGEFAMIGIMVDGKPLARAYS-IASPNWAEELEFFSIKVPDGPLTSRLQHIQVGDELLIsKKPTGT 98
                   55678888886655.*************************.77788888899888889***************988663567776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.6
                    ---TT-EEEEEEC CS
  FAD_binding_6  29 glpvGqhvflrlk 41 
                    +l++G+h+++ ++
     EGE27465.1 103 DLLPGKHLYMLAT 115
                    5899****99876 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.0       2.9   1.7e+04     118     128 ..      57      67 ..      52      72 .. 0.74
   2 ?   10.7   0.0   7.2e-05      0.43       2      23 ..     108     129 ..     107     164 .. 0.81
   3 ?   -1.4   0.0      0.38   2.2e+03     139     151 ..     216     228 ..     205     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 2.9
                    xxxxxxxxxxx RF
  NAD_binding_6 118 RPnlkevlkdi 128
                     Pn+ e+l+ +
     EGE27465.1  57 SPNWAEELEFF 67 
                    69999988755 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 7.2e-05
                    xxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   2 envllvagGiGitpfisilkdl 23 
                    ++++++a G+G++pf+s+++d 
     EGE27465.1 108 KHLYMLATGTGLAPFLSLCRDP 129
                    579*****************95 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.38
                    xxxxxxxxxxxxx RF
  NAD_binding_6 139 vfvCGppklvkev 151
                    v++CG+ +++ ++
     EGE27465.1 216 VMICGSMAMNADT 228
                    899***9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1906.10
//
Query:       EGE27466.1  [L=238]
Description: hypothetical protein EA1_02347 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-43  145.3   0.0    1.3e-42  144.8   0.0    1.3  1  TrmO      tRNA-methyltransferase O
    8.1e-08   32.3   0.1    1.3e-07   31.6   0.1    1.5  1  TrmO_C    TrmO C-terminal domain


Domain annotation for each model (and alignments):
>> TrmO  tRNA-methyltransferase O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.0   1.4e-46   1.3e-42       1     119 []      21     143 ..      21     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 1.4e-46
                 TS-SSGGG--.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS....-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEEE....TTE CS
        TrmO   1 giPrqpglaeeaeaeielepeynseealegleefshlwllfvfhen.aekklkakvrpprlggnervGvfatRsphRpnpiglsvvklekve....gnv 94 
                 giPrqp+l++ ++++ie+ p+y++ +a+eg+e++shlw++++fh+n  +++++++vrppr ggn+++GvfatRs++Rp+p+glsvv+le++e    + +
  EGE27466.1  21 GIPRQPNLVQ-VSSHIEFVPPYDNVAAFEGIENYSHLWIIWQFHHNrPQANFRPQVRPPRFGGNAKMGVFATRSMYRPSPLGLSVVRLERLEvinhKVR 118
                 79********.9********************************77356779***************************************9999889* PP

                 EEEES----TT-EEEEEEE--HHHH CS
        TrmO  95 levsgvDlldgtpvlDiKPYvpyaD 119
                 l++ g+D+ dgtp++DiKPY++++D
  EGE27466.1 119 LYIIGADMADGTPIFDIKPYLAFSD 143
                 *********************9987 PP

>> TrmO_C  TrmO C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   1.4e-11   1.3e-07      26      63 ..     185     221 ..     141     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.4e-11
      TrmO_C  26 kqlIeevLaqDPRPaYkkskpeeriYgmrLydlnirwr 63 
                  q+I+ ++aqDPRPaY++++ +  i+++r+ ++++ + 
  EGE27466.1 185 VQIIQGLIAQDPRPAYRQDEVG-TIFALRYDGVDVDFL 221
                 699****************988.************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1781.85
//
Query:       EGE27467.1  [L=64]
Description: hypothetical protein EA1_02352 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 483.95
//
Query:       EGE27468.1  [L=473]
Description: RND system membrane fusion protein AcrA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-14   51.5   6.9    2.2e-12   46.6   6.9    2.5  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    6.9e-07   29.9   6.3    0.00037   21.2   0.3    3.5  4  HlyD_3           HlyD family secretion protein
    4.4e-06   26.4   2.4    4.4e-06   26.4   2.4    3.4  2  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00016   21.5  11.2    0.00033   20.5  11.2    1.5  1  OEP              Outer membrane efflux protein
     0.0093   15.8   0.1      0.095   12.5   0.0    2.7  3  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
       0.64   10.4  22.4        3.6    7.9   8.5    2.5  2  HrpB7            Bacterial type III secretion protein (HrpB7)
        1.8    8.7   5.8          5    7.3   4.4    2.5  3  DUF2163          Uncharacterized conserved protein (DUF2163)
        4.7    7.2  15.2        2.9    7.8   5.7    2.4  2  YscO             Type III secretion protein YscO


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   6.9     1e-15   2.2e-12      18     214 .]      64     333 ..      53     333 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1e-15
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........................................XXXXXXX CS
    HlyD_D23  18 rlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk.........................................akkklkk 75 
                 ++++v ++v+G ++++    +g+ V++GqpL++++    ++  ++  +a +                                         +      
  EGE27468.1  64 ETSEVRPQVTGIIDEVLFY-EGSMVQAGQPLYRINVDSYTSQVQAGEAAVQnaeaavgnaeatrasaqanlaaqeanlaqaradvmrlegllE------ 155
                 467899***********99.***************9999888888777777666888888777777666666666555555555555555550...... PP

                 X............................XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXX CS
    HlyD_D23  76 ke...........................lleaarerLrllgvs.eeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgdt..lftiadlst 144
                                               +++a + + +   s +++ a+l++++    ++ vkapisGv    +v+ G  v+++++  l+ti+ l++
  EGE27468.1 156 -VeaisrqafdqavtamrtaeanvlaaraAVAQADANIHSATASvQSARANLNASQLDAGRTIVKAPISGVTSISAVTAGALVSANQPtpLVTINRLDE 253
                 .05555555555556666666667777778888888888877762344567888888888999********************8887555********* PP

                 XXXXXXXXXXXX....XXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 145 VWveaevyeqql....alvkvgq......kvevtvealpgktfeGkvdyiyptvdpetRtvkvRieldNpdgkLkpgmfA 214
                 V+v++    +q+    ++++ gq      +v++ +e  +   + G++   + +vd++t  +++R++++NpdgkL pgmf+
  EGE27468.1 254 VYVDISQSSTQMlrlrEQIESGQvgqggaDVQLVLEDGQTYPILGQLLLANAQVDTATGNMTLRAVFPNPDGKLIPGMFV 333
                 ***99988887633334455555222311455555555555688***********************************7 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.2   0.00038      0.85       2      33 ..      68     102 ..      67     162 .. 0.72
   2 ?   -1.9   0.0       2.4   5.4e+03      34      50 ..     177     192 ..     165     210 .. 0.64
   3 !   21.2   0.3   1.7e-07   0.00037       2     103 ..     218     327 ..     217     331 .. 0.91
   4 ?   -3.7   0.0         8   1.8e+04      49      66 ..     406     422 ..     405     431 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00038
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiip...p 33 
                 +r  v+G++ e+   eg++vqag++l +i     +
  EGE27468.1  68 VRPQVTGIIDEVLFYEGSMVQAGQPLYRINVdsyT 102
                 7889************************9863332 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
      HlyD_3  34 dtllveakvpaadlgsi 50 
                 + l+++a+v++ad++ i
  EGE27468.1 177 NVLAARAAVAQADAN-I 192
                 455677777777765.3 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 1.7e-07
      HlyD_3   2 lrApvdGvvvelnveegevvqagde..lleiippdtllveakvpaadlgsik.........kkgqkvtlkldqgsdytlkgkierisptvdaktgaykv 89 
                 ++Ap++Gv +   v++g  v+a+++  l++i   d++ v+++ +++++ +++           g+ v+l l++g+ y++ g++    + vd+ tg++++
  EGE27468.1 218 VKAPISGVTSISAVTAGALVSANQPtpLVTINRLDEVYVDISQSSTQMLRLReqiesgqvgQGGADVQLVLEDGQTYPILGQLLLANAQVDTATGNMTL 316
                 89******999999********99999***********************9999989877766889***999*************************** PP

      HlyD_3  90 evslenpekksipl 103
                 ++ ++np+    +l
  EGE27468.1 317 RAVFPNPD---GKL 327
                 ******94...333 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 8
      HlyD_3  49 sikkkgqkvtlkldqgsd 66 
                 ++ k+ q+v+++  +   
  EGE27468.1 406 KV-KPDQEVNVRELPAAS 422
                 56.488999998774443 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   2.4     2e-09   4.4e-06       2      49 ..      65     112 ..      48     147 .. 0.91
   2 ?   -2.3   0.4       1.8     4e+03      40      49 ..     183     192 ..     180     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2e-09
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49 
                      + ++ ++v G + +++  +G  V+aG+ L++++ + +  +++  ea++
       EGE27468.1  65 TSEVRPQVTGIIDEVLFYEGSMVQAGQPLYRINVDSYTSQVQAGEAAV 112
                      6789*************************************9977665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
  Biotin_lipoyl_2  40 lalaqaeaql 49 
                      +a+aqa a++
       EGE27468.1 183 AAVAQADANI 192
                      7999**9997 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5  11.2   1.5e-07   0.00033      67     185 ..      85     208 ..      26     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
         OEP  67 vgltlsqplfdg.....gkrrarvkaakaqleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqv 160
                  ++++ qpl++       ++ ++ +aa ++ eaa  + e++r + ++++a   ++l +a++ +  +e +l+      ++  ++  a ++ + +vl a++
  EGE27468.1  85 SMVQAGQPLYRInvdsyTSQVQAGEAAVQNAEAAVGNAEATRASAQANLAAQEANLAQARADVMRLEGLLEVEAISRQAFDQAVTAMRTAEANVLAARA 183
                 6899999999999955555555555566666666668999************************************************99988****** PP

         OEP 161 rllqaraelaeaeqqlqlaraqLey 185
                  ++qa a++ +a +++q ara+L++
  EGE27468.1 184 AVAQADANIHSATASVQSARANLNA 208
                 ***********************86 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.2e-05     0.095      44      73 .]      67      96 ..      64      96 .. 0.91
   2 ?   -1.7   0.0       1.2   2.6e+03      13      32 ..     228     242 ..     216     247 .. 0.49
   3 ?   -2.7   0.0       2.4   5.4e+03      27      41 ..     393     407 ..     378     413 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
                   EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 44 eieapkaGvvkeilvkeGdtvevgdllaki 73
                   e+  +++G++ e+l  eG++v++g++l +i
     EGE27468.1 67 EVRPQVTGIIDEVLFYEGSMVQAGQPLYRI 96
                   677889*********************887 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
                    EE.ECSESSSTTCEE-TTSE CS
  Biotin_lipoyl  13 eegvvevlvkvGdkVkagqv 32 
                            v +G  V+a+q+
     EGE27468.1 228 I-----SAVTAGALVSANQP 242
                    2.....34555555555554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.4
                    E-TTSEEEEEECTTE CS
  Biotin_lipoyl  27 VkagqvlaeveamKm 41 
                    ++ g+ ++++   K+
     EGE27468.1 393 INSGDRVVIIGGSKV 407
                    666666666666555 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.5    0.0016       3.6      75     125 ..     106     156 ..     101     163 .. 0.90
   2 ?    6.5   7.4    0.0046        10      81     129 ..     164     212 ..     157     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0016
       HrpB7  75 lacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqida 125
                 +a +a ++ +e+ v+ aea  a a+++l+a+e+++a+ ++ + R+++ +++
  EGE27468.1 106 QAGEAAVQNAEAAVGNAEATRASAQANLAAQEANLAQARADVMRLEGLLEV 156
                 6667888999************************************99987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0046
       HrpB7  81 rdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrer 129
                  d++   +r aea++ aar+a+++a +++    + + +++a+++a +  
  EGE27468.1 164 FDQAVTAMRTAEANVLAARAAVAQADANIHSATASVQSARANLNASQLD 212
                 5788888999999999999999999999999999999999999887765 PP

>> DUF2163  Uncharacterized conserved protein (DUF2163)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.3     0.037        83      92     144 ..      93     145 ..      49     151 .. 0.78
   2 ?    7.3   4.4    0.0022         5      61     143 ..     112     210 ..      76     216 .. 0.67
   3 ?   -2.5   0.0       2.3   5.1e+03      34      54 ..     278     299 ..     252     321 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.037
     DUF2163  92 fdgaevevwrvnwedpeqrvllfrgrlgevrrsggaftaelrglaeaLqqpvg 144
                 +  + v+ ++ + ++ e++v+ ++  +g+ + ++++++a+l+   + L+q   
  EGE27468.1  93 LYRINVDSYTSQVQAGEAAVQNAEAAVGNAEATRASAQANLAAQEANLAQARA 145
                 55678888888999999999999999999999999999999999999988765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0022
     DUF2163  61 sqssglsvdnleitgalssdaite.....................edlaaglfdgaevevwrvnwedpeqrvllfrgrlgevrrsggaftaelrglaea 138
                  q+++ +v n+e+t a  ++ ++                      e++++++fd+a   +++++       vl +r  + + + + +++ta++++ ++ 
  EGE27468.1 112 VQNAEAAVGNAEATRASAQANLAAqeanlaqaradvmrlegllevEAISRQAFDQAVTAMRTAEA-----NVLAARAAVAQADANIHSATASVQSARAN 205
                 55555555555555555444444434222223333333445555667777777776666666655.....89999********************9999 PP

     DUF2163 139 Lqqpv 143
                 L+ ++
  EGE27468.1 206 LNASQ 210
                 99876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.3
     DUF2163  34 gfTdhDrdlvld.Gvtyraasg 54 
                 g   +D +lvl+ G+ty   + 
  EGE27468.1 278 GQGGADVQLVLEdGQTYPILGQ 299
                 4455677777655777765444 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.7    0.0013       2.9      61     127 ..      91     157 ..      88     169 .. 0.85
   2 ?    3.1   3.6     0.038        84      13      48 ..     172     207 ..     150     223 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0013
                 TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  61 klvllkelekvkqqvalLrekeaelekqveeakqqleaerealrqarkelqearraveKfaelarlv 127
                 +++ +  ++ + +qv++ ++++++ e +v  a+++   +  +l++++++l++ar  v +++ l + +
  EGE27468.1  91 QPLYRINVDSYTSQVQAGEAAVQNAEAAVGNAEATRASAQANLAAQEANLAQARADVMRLEGLLEVE 157
                 666667899*********************************************9998877666554 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  13 eraekalkrqeqalaeareaheqaresladyrawra 48 
                 + ae  + ++++a+a+a ++  +a +s++  ra + 
  EGE27468.1 172 RTAEANVLAARAAVAQADANIHSATASVQSARANLN 207
                 345555555556666666666666666655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3291.57
//
Query:       EGE27469.1  [L=1051]
Description: RND system efflux pump AcrB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1251.2  24.8          0 1251.0  24.8    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
      2e-08   33.9  39.5    5.4e-05   22.7   5.8    3.2  3  SecD_SecF  Protein export membrane protein
    4.9e-08   32.3  43.5    1.1e-06   27.8  17.0    3.0  3  MMPL       MMPL family


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1251.0  24.8         0         0       1    1020 [.       1    1029 [.       1    1030 [. 0.99

  Alignments for each domain:
  == domain 1  score: 1251.0 bits;  conditional E-value: 0
                  -HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE.TTSEEEEEEEESTT CS
    ACR_tran    1 iikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS.seglssitltFedg 96  
                  +++ffi+rpifa+v+a++i+l+Gil+i++lP++++P+iapp+v+v++ ypGa++e+ve++vtq++Eq+++g+dgl+y+sS+S  +g++s+tltFe+g
  EGE27469.1    1 MSRFFIHRPIFAWVIAILIMLVGILAINNLPIEQYPKIAPPQVKVRAVYPGADAETVENSVTQIIEQQMKGIDGLMYMSSNSsAAGSASVTLTFENG 97  
                  799*******************************************************************************999************ PP

                  S-HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHH CS
    ACR_tran   97 tdidiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkl 193 
                  td+d A++qvqn+lq+a+++LPe vq++g++++k++s+ ++v a++s+dgs+++ +++d+++t i d++srveGVg  +++G s++a+riwldp+kl
  EGE27469.1   98 TDPDTAQVQVQNKLQSAMSSLPETVQRTGLNVEKSASDFLMVTAFVSEDGSMDQSDIADYVATSIVDPISRVEGVGGTNVFG-SSYAMRIWLDPAKL 193 
                  **********************************************************************************.************** PP

                  HCTT--HHHHHHHHHHHSSB-EEEEE.......TT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEE CS
    ACR_tran  194 aklgltltdvvsalkeqnvnvaaGql.......egqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavll 282 
                  ++++l ++dv+sa+++qnv+v+aGql       ++   ++++++q+ lq++e++e+i++k ++ g++vr++DvA+Velg+e+++ +a++ng+ a++l
  EGE27469.1  194 RAYNLIPSDVSSAIRSQNVQVSAGQLgtlptntDRVVINATVSVQSYLQTPEQFEDILLKtDTAGAQVRIKDVARVELGSENYQFRAQYNGQAASGL 290 
                  ******************************99888899**********************99*********************************** PP

                  EEEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHT CS
    ACR_tran  283 evkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkal 379 
                  ++  +pgana+ev +av  +l+eL++++P g+++vv+yd+t+fvr si +Vv tLlea+vLv+lv+flFLqn+rat+ip++avP+++lgtfavl+++
  EGE27469.1  291 AIMLAPGANALEVREAVGVRLDELSQNFPTGLKMVVPYDTTPFVRLSITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPVVILGTFAVLSVF 387 
                  ************************************************************************************************* PP

                  T--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  380 gfslNlltLfgLvlAiGlvvDdAiVvvEnierklee.egekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsv 475 
                  g+s+N lt+f++vlAiGl+vDdAi+vvEn+er lee    + + a+++sm+ei   +++ial+l++vf+P++f+gG+ G ++rqfa+t++ +++ls+
  EGE27469.1  388 GYSINILTMFAMVLAIGLLVDDAIIVVENVERILEEnPSIQVMDATIQSMREISKVVIGIALILSVVFVPMIFFGGSSGVIYRQFAVTLMTSMVLSA 484 
                  ************************************788888******************************************************* PP

                  HHHHCCHHHHHHHHS---STT-CT...SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-ST CS
    ACR_tran  476 lvaltltPalcallLkerkeekek...kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlpp 569 
                  ++al++tPalc ++Lk + +++ +   +ff +fnr+f +++r+Y++++ k  +++  +l+v+  ++++++l+f+r+p++f+Peed+g ++t vqlp+
  EGE27469.1  485 FIALVFTPALCVTILKRQAHKDINiqtGFFGWFNRFFYQTSRRYENFIGKTYASKLAYLAVYTGIVAVMALIFMRLPSSFVPEEDQGAVMTLVQLPA 581 
                  ********************9988999********************************************************************** PP

                  TB-HHHHHHHHHHHHHHHH..TTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEE.EETTSSCCC CS
    ACR_tran  570 gvsleqtqkvlkqvekilk..ekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvel.lapiqlrel 663 
                  g++l++t++v+++++++ +  e +++esvf+  Gf + g  +g+ns+++fi+Lk+++er ++e++++ +++r++     ip+a +++ +ap+++++ 
  EGE27469.1  582 GSTLDKTNAVMDKLANYYHdkETDNIESVFTISGFGFMG--SGQNSGMAFIKLKDWDERAGSENTAQSIARRAMVMNMMIPEASLIFpIAPPPIQGF 676 
                  ****************76657899*************99..9*****************************************98877********* PP

                  SSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEE CS
    ACR_tran  664 etlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkv 760 
                  +++sg++++l++ + g ++eaL  a++ql+ ++ ++p+++++++ +qed p+l+v+i++++aa++Gv + +indt+++a+ggsyvndfi++gr +kv
  EGE27469.1  677 GNTSGFDLQLKD-IGGVGHEALLDARNQLMGMAMQNPAIASIHPGGQEDAPKLKVDINQAQAAAYGVPLTAINDTIAQAWGGSYVNDFIDRGRIKKV 772 
                  ************.************************************************************************************ PP

                  EEEE-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHH CS
    ACR_tran  761 vvrleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqe 857 
                  +++ e d r+ ped+++++vrn++g+mv ++a++ +++e+g++s+ r+ng++s+v++g++a g+s+++a+ea++++a++  lp+g+++ewtg + ++
  EGE27469.1  773 YIQGEPDSRVVPEDINRWYVRNQSGEMVSFGAFSGSQWEYGSPSLARYNGVSSMVLTGSAALGVSTGDAMEAMAQMASQ--LPAGIDFEWTGLSLEQ 867 
                  *******************************************************************************..**************** PP

                  HHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHH CS
    ACR_tran  858 qeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleea 954 
                  q+++++++il+al++l+vfl+Laalyes+s p++++l++Pl+++G ll + + gl+++v+ qv l+++iGl++kNail++efake++e  g +l++ 
  EGE27469.1  868 QKSGGQAPILYALSILVVFLCLAALYESWSVPFAVILVIPLGVIGSLLLTKIHGLANDVYLQVALLTVIGLSAKNAILIIEFAKEIQE-SGQTLKAS 963 
                  ****************************************************************************************.9999**** PP

                  HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  955 ileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  i++aa++RLrPi+MT+la+ +Gv+PL ++tgaGs++q+++g++vlgG++tst+L+++++P++Yv v
  EGE27469.1  964 IMMAARMRLRPIIMTSLAFGVGVVPLYIATGAGSGSQNAVGTGVLGGVLTSTFLGIFFIPMFYVWV 1029
                  ***************************************************************987 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8  22.0   2.8e-07    0.0016      31     184 ..     339     496 ..     333     501 .. 0.80
   2 ?    0.5   0.1     0.055   3.3e+02      12      64 ..     523     576 ..     516     578 .. 0.69
   3 !   22.7   5.8     9e-09   5.4e-05      37     179 ..     878    1018 ..     864    1031 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.8e-07
                 HHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH..HHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHH CS
   SecD_SecF  31 ekavlallialvliliyvalrFewrvalaaiialvhDvii..tvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinls 127
                 +++v+ ll a+vl+++ v++ F +++   +i +l+  v+i  t +vls++g  ++  t+ a+   iG  v+d ++v + v+  l+++   ++ +++ +s
  EGE27469.1 339 TQVVYTLLEAVVLVFL-VMFLFLQNWRATIIPTLAVPVVIlgTFAVLSVFGYSINILTMFAMVLAIGLLVDDAIIVVENVERILEENPSIQVMDATIQS 436
                 5677788877777665.56667777777778887777776447999****************************************9999999999999 PP

                 HHHHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHHH CS
   SecD_SecF 128 lnqtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiasplll 184
                 + +  +  i   l++ +v v ++++gg    + ++fa++l+  +++ ++ ++ +  +l +
  EGE27469.1 437 MREISKVVIGIALILSVVFVPMIFFGGssgVIYRQFAVTLMTSMVLSAFIALVFTPALCV 496
                 998777777777778889999999999764456899999999998877666655555555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.055
                 -EEEEEEEEE-HHHHHHHHHHHHHH.HHHHHHHHHHHHHHHT-HHHHHHHHHHH CS
   SecD_SecF  12 daekisvetvgpsvskelaekavla.llialvliliyvalrFewrvalaaiial 64 
                 +++++  +++g+++ ++la  av+  +++ ++li++ +   F  +   +a+++l
  EGE27469.1 523 QTSRRYENFIGKTYASKLAYLAVYTgIVAVMALIFMRLPSSFVPEEDQGAVMTL 576
                 5667778999***99999987776515555666666676667666666666665 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 9e-09
                  HHHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHH CS
   SecD_SecF   37 llialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnqtL 132 
                   +++++++++ +a  +e w+v++a+i+ +   vi  + +  + g+  d+   +alLt+iG S ++ +++ +  +e   +++ +tlk  i  +  + L
  EGE27469.1  878 YALSILVVFLCLAALYEsWSVPFAVILVIPLGVIGSLLLTKIHGLANDVYLQVALLTVIGLSAKNAILIIEFAKEI--QESGQTLKASIMMAARMRL 972 
                  44566677777777786699*******9******9999999999**************************998887..567999************* PP

                  HHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHH CS
   SecD_SecF  133 trtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifia 179 
                     i+tsl   + vv l++ +g   +s +    a+  G++ g+++s f+ 
  EGE27469.1  973 RPIIMTSLAFGVGVVPLYIATGagsGSQN----AVGTGVLGGVLTSTFLG 1018
                  *******************9984333333....44456666666665543 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.5       0.1   6.2e+02      28      86 ..     101     148 ..      73     155 .. 0.51
   2 !   27.8  17.0   1.9e-10   1.1e-06     148     307 ..     344     504 ..     330     528 .. 0.77
   3 !   14.8  11.9   1.7e-06      0.01     105     300 ..     840    1027 ..     825    1040 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.1
        MMPL  28 kiivvvlaegdealgsaaaeaavdelvdelkkdt.khvgevsdflsdpdvaaafvSkDgk 86 
                 ++++v + ++       + ++a+  l + +++ + ++ +++sdf     + +afvS+Dg+
  EGE27469.1 101 DTAQVQV-QN-------KLQSAMSSLPETVQRTGlNVEKSASDF----LMVTAFVSEDGS 148
                 3333333.22.......222233333333333220333456666....788888999986 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 1.9e-10
        MMPL 148 ievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfv.lgllvvlliavGtDYallLvsRyreelaagedre..eavira 243
                 + + ++v++++++++ +++  a ++p l v v +l ++++++      +++ s  + +++++vl+i+  +D a+++v      l+++++ +  +a i+ 
  EGE27469.1 344 TLLEAVVLVFLVMFLFLQNWRATIIPTLAVPVVILGTFAVLS------VFGYSINIlTMFAMVLAIGLLVDDAIIVVENVERILEENPSIQvmDATIQS 436
                 556689***********************9998888888844......4455544405569***************976666666665443117***** PP

        MMPL 244 vastgkvvtaaGltvaiamlgLvv...arlpvlaqvGvaialGvlvdvlivlTllPAllvllGraa.l 307
                 ++ + kvv++ +l++ + ++ + +   ++  + +q++v++ ++++++++i+l ++PAl+v++ +++  
  EGE27469.1 437 MREISKVVIGIALILSVVFVPMIFfggSSGVIYRQFAVTLMTSMVLSAFIALVFTPALCVTILKRQaH 504
                 ***************9999999983334566789**************************98777322 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.7e-06
        MMPL  105 esvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelst 201 
                  ++++a ++++++++  +g++ e tG ++  +     s  ++ ++ +++++v+++ L+ +y S   ++ ++l++ ++++ +l l     +++gl+ ++
  EGE27469.1  840 DAMEAMAQMASQLP--AGIDFEWTGLSLEQQK----SGGQAPILYALSILVVFLCLAALYESWSVPFAVILVIPLGVIGSLLL----TKIHGLA-ND 925 
                  55666666666666..9********8877666....99999********************************9999887766....3333332.33 PP

        MMPL  202 fvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTll 295 
                  + l+ + + +i+ ++  a+l++   +e  + g++ +++++ a +   + +++  l + + ++ L +a+    ++ ++vG+ +  Gvl ++++ + ++
  EGE27469.1  926 VYLQVALLTVIGLSAKNAILIIEFAKEIQESGQTLKASIMMAARMRLRPIIMTSLAFGVGVVPLYIATgagSGSQNAVGTGVLGGVLTSTFLGIFFI 1022
                  34444444556777889***********************************************8864333889999**************988888 PP

        MMPL  296 PAllv 300 
                  P + v
  EGE27469.1 1023 PMFYV 1027
                  86655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1270  (0.070835); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.49
# Mc/sec: 6432.37
//
Query:       EGE27470.1  [L=507]
Description: RND system membrane channel OprM [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-49  168.6  33.4    6.4e-27   94.6   8.2    2.1  2  OEP            Outer membrane efflux protein
  ------ inclusion threshold ------
      0.046   13.9   0.1       0.27   11.4   0.0    2.3  2  CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domai
        7.1    6.7   7.3       0.52   10.4   1.7    1.9  2  MnmE_helical   MnmE helical domain


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2  17.1   2.8e-26   1.6e-22       1     188 []      77     262 ..      77     262 .. 0.96
   2 !   94.6   8.2   1.1e-30   6.4e-27       9     188 .]     297     475 ..     291     475 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 2.8e-26
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltl.sqplfdggkrrarvkaakaqleaaeaq 98 
                 l+ l++lal+nn dl++a +++++a+a++++  a   P+++ ++s  ++ n+  +   + +     vgl +  ++l  +gk  ++ ++a  q+ a+ a 
  EGE27470.1  77 LAALIELALQNNKDLQSAVLAVQSARAQYQITEAGSVPQVGSNTSVTRQANNRIDAHASTNYH---VGLAMsGYELDLWGKVASQKQQALHQYLATNAA 172
                 5689*************************************************9999998877...8888855899999******************** PP

         OEP  99 leqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 +++++ ++++ vaq y +l  a +q++lae++lk  e a+ ++++r++aG  s++  lqa ++l +ar++  +a +++ +a+++L++l+g
  EGE27470.1 173 KDAVQISIISSVAQGYVNLAHALAQRQLAEQTLKTREHAMMITQKRFEAGIDSKSPSLQAASSLESARLAVYAADTSILKAKNALQLLIG 262
                 ******************************************************77********************************98 PP

  == domain 2  score: 94.6 bits;  conditional E-value: 1.1e-30
         OEP   9 lennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqarqqlr 107
                 l ++pd+++ae++++aa an+++a+a+++P+++ls++ g+++n+ ++ ++++  g+ s+g  +s+p+fd g+rra+ ++a+  ++ a  ++e+a+q+  
  EGE27470.1 297 LYYRPDIMQAEHRLKAAGANINVARAAYFPSIRLSSNVGFSSNSLNNLFESSALGW-SFGPAISLPIFDAGSRRANHEMAQVAQQSALVDYEKAIQNAF 394
                 4469**********************************************999999.9***************************************** PP

         OEP 108 levaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  ev+  +++  ++  +l+++ ++++++++++++a ar++ Gl ++l vl+a+++l+ +++++++ e +  +++ qL+++lg
  EGE27470.1 395 KEVSDVLAERATLGLRLDAQIRLQDNYRQTYDIAYARFRSGLDNYLTVLDAERSLFINQQNILQLELAKLVSQIQLYQALG 475
                 *******************************************************************************98 PP

>> CO_deh_flav_C  CO dehydrogenase flavoprotein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.5e-05      0.27      27      67 ..     233     273 ..     225     283 .. 0.88
   2 ?   -2.5   0.0      0.96   5.7e+03      63      90 ..     397     424 ..     388     429 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.5e-05
                    TCEECEEEEEEESSSSS-EE-HHHHHHHTTSBSSHHHHHHH CS
  CO_deh_flav_C  27 dgkiedariafggvaptpvraekaeaaLiGkplseelleea 67 
                     +  e+ar+a+ ++ +  + a++a ++LiG+p+ +ell ++
     EGE27470.1 233 ASSLESARLAVYAADTSILKAKNALQLLIGRPVPNELLPAI 273
                    45789****************************99999765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.96
                    HHHHHHHHHHTTCHHHTCTTC-HHHHHH CS
  CO_deh_flav_C  63 lleeaakaleeelspasdprasaeYRrs 90 
                    + +  a++++  l++++++r +  YR++
     EGE27470.1 397 VSDVLAERATLGLRLDAQIRLQDNYRQT 424
                    4445556666677788888888888876 PP

>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.7   8.7e-05      0.52      73     201 ..     125     273 ..      76     274 .. 0.69
   2 ?   -1.6   0.3      0.42   2.5e+03      83      83 ..     423     423 ..     370     499 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.7e-05
                   xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx............xxxxxxxxxxxxxx..xxxxxxxxxxxxxxx.xxxx....xxxxxxxxxxxxx RF
  MnmE_helical  73 elkeelekllatakrgellreGik.Dllkeke............ekeeeevlkiSakt..gegieeLeeaikele.leei....eeeplltnaRhke 149
                   +++++++++ +t  +  l  +G++ Dl  + +            +++ +++++iS+ +   +g  +L +a+++ +  e++    e+  ++t++R  +
    EGE27470.1 125 QANNRIDAHASTNYHVGLAMSGYElDLWGKVAsqkqqalhqylaTNAAKDAVQISIISsvAQGYVNLAHALAQRQlAEQTlktrEHAMMITQKRFEA 221
                   555566666666666666666666844444443333445555553344444445544311469********99553433345555689999999999 PP

                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical 150 alekalealeeakealeaglpldlvaedLrealeaLgeItGevvtedlLdeI 201
                    + +   +l++a +  +a l+  ++  ++ +a +aL+ ++G+ v ++lL  I
    EGE27470.1 222 GIDSKSPSLQAASSLESARLAVYAADTSILKAKNALQLLIGRPVPNELLPAI 273
                   9********9555555555777777999*****************9999766 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.42
                   x RF
  MnmE_helical  83 a 83 
                   +
    EGE27470.1 423 Q 423
                   1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3569.70
//
Query:       EGE27471.1  [L=222]
Description: hypothetical protein EA1_02372 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-13   48.4   0.0    1.1e-12   47.9   0.0    1.2  1  TerD      TerD domain


Domain annotation for each model (and alignments):
>> TerD  TerD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   5.9e-17   1.1e-12      15     136 ..      36     154 ..      23     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 5.9e-17
        TerD  15 k.eapglkkvlvglgWdvaekkgadfdlDasalllgengkvrsdedfvfynnlkspdgsvehtgdnltgegegdd.....eqievdlskvpaevekivf 107
                 + e++gl+++l++l    +  +  ++d+D s+++ ++  ++    + ++y+nl+++++s++h+gd l g+++ dd     eqi+++l+k+ +e +++vf
  EGE27471.1  36 SlEKQGLSALLAKLPLADE--APVAMDIDLSCFVYDKAFNIL---ETIWYGNLRNANESIRHHGDALVGAKSFDDsliqqEQIQIKLDKLLKEAHHLVF 129
                 4456899999999999664..579**********98887777...77***********************9977777888******************* PP

        TerD 108 vvtiyeaeerkqnfgqvenayirvvdaat 136
                 v++ y+    +q +++ ++ ++ + d++t
  EGE27471.1 130 VLSSYH----NQPLQKAKKGMLYFGDKET 154
                 *****5....7777777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1767.60
//
Query:       EGE27472.1  [L=464]
Description: FAD-linked oxidase-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-57  194.9   0.0    2.3e-57  194.5   0.0    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    3.6e-37  127.2   0.8    6.1e-37  126.5   0.8    1.4  1  FAD_binding_4  FAD binding domain
  ------ inclusion threshold ------
       0.11   11.9   0.1       0.17   11.2   0.1    1.2  1  DUF4917        Domain of unknown function (DUF4917)


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.5   0.0   3.8e-61   2.3e-57       6     250 .]     222     462 ..     217     462 .. 0.95

  Alignments for each domain:
  == domain 1  score: 194.5 bits;  conditional E-value: 3.8e-61
                    EEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE...... CS
  FAD-oxidase_C   6 avalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvlvaqd 101
                    + +++++ +f ++v+ ++++ qa + ++a+e+ d+ a+d v a  ++k+++++++++++l+efe+ + ++++ ++  ++e+++e++ + d++++q+
     EGE27472.1 222 TAMVLGVTEFNSVVTLLAQFGQA-LTLTAFEFFDQLAVDKVIAAGHTKAPFESQAPFYVLLEFEAINDDVLDLAMG-VFEQCAEEGLIVDGVMSQS 315
                    678999*****************.*******************************************999999999.******************* PP

                    ....ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHH..EEEEEEEEEETTEEEEEEEEEEE..--T..T--THHHH CS
  FAD-oxidase_C 102 eaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyg..levvlfgHagdgnlhlyilfdladeaee..eraeklvd 193
                      + ++lwk+R+++++        +  ++++ D+sv +s+lad+++di+ ++ +    +e+++fgH+gdgnlhl+il +++ +++e  e+ +++ +
     EGE27472.1 316 IGQLQELWKLRESISE------TISAFTPYKNDISVLISHLADFISDIEHIVTANYpdFEICWFGHIGDGNLHLNILKPANLTKDEffEKCQTVNT 405
                    ****************......88999****************************99*********************998774433367777777 PP

                    HHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 194 evvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                     v+d + +++Gsis+EHGvG+ kk+yl+++++++++++m++iKa++DP+gi NPgk+
     EGE27472.1 406 YVFDTVQKYQGSISAEHGVGMTKKPYLTYTRTQTEIDYMKAIKAVFDPNGIINPGKI 462
                    77888**************************************************96 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.8     1e-40   6.1e-37       2     138 ..      43     180 ..      42     181 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.5 bits;  conditional E-value: 1e-40
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                    +av++p+++eev+ +++lane+++p+++ Gg ++l+ +av ++g vv++++++n+i ++ e+++ ++v aGv+ + l+e+++ +gl + ++++s  
     EGE27472.1  43 QAVIFPKTTEEVSVIVKLANEHQTPLVPSGGRTGLSAAAVaTKGEVVISFDKMNQIGQFYEADRMVEVDAGVITQSLQEFAKNQGLYYAVDFASSG 138
                    69**********************************888879999*************************************************** PP

                    GSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    ++ +GG+i+tnagG  + +yG++rd++lgl+vv+++G +++l
     EGE27472.1 139 SSQIGGNISTNAGGIKVIRYGMTRDQILGLTVVTGKGDILTL 180
                    ***************************************997 PP

>> DUF4917  Domain of unknown function (DUF4917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   2.8e-05      0.17      72     129 ..     320     378 ..     311     420 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.8e-05
     DUF4917  72 qaynklreaLiqtvrnvhpeydevsdhleeiykflkkfktvlsLny.DLlvyWtilvge 129
                 q+  klre++ +t+ +  p  +++s  + ++  f++  +++++ ny D+ + W    g+
  EGE27472.1 320 QELWKLRESISETISAFTPYKNDISVLISHLADFISDIEHIVTANYpDFEICWFGHIGD 378
                 56779************9999*************************8888888766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3420.02
//
Query:       EGE27473.1  [L=469]
Description: U32 family peptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-96  320.9   0.1    4.6e-96  320.5   0.1    1.2  1  Peptidase_U32    Peptidase family U32
    8.3e-19   67.7   0.0    2.1e-18   66.3   0.0    1.7  1  Peptidase_U32_C  Peptidase family U32 C-terminal domain
  ------ inclusion threshold ------
      0.062   13.2   0.9       0.11   12.4   0.9    1.4  1  Tachystatin_B    Antimicrobial chitin binding protein tachyst


Domain annotation for each model (and alignments):
>> Peptidase_U32  Peptidase family U32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.5   0.1  7.8e-100   4.6e-96       1     230 [.      80     360 ..      80     363 .. 0.98

  Alignments for each domain:
  == domain 1  score: 320.5 bits;  conditional E-value: 7.8e-100
  Peptidase_U32   1 leklrkyleklaelgvdavivqDpgvlelareeapelelhlStqanitnseavrflkelGasrvvlaRElsleeikaikekvpdvelEvfvhGalc 96 
                    l+++ + ++++ e+++da+i++D g+++++re +p++ +hlS+qan++n+++v+f++++G+srv+l+RElsl+ei++i ++vpd+e+EvfvhGalc
     EGE27473.1  80 LKTFIEDIRPVIEMKPDALIMSDAGMIMMVREAFPNQVIHLSVQANAVNWATVKFWQQMGISRVILSRELSLKEIEQIIKEVPDMEVEVFVHGALC 175
                    5788999***************************************************************************************** PP

  Peptidase_U32  97 vaysGrcllssylsgrsanrgecaqpcrldyr....................................................lieekekgeeep 140
                    +aysGrclls y+++r+an+g c+++cr++y+                                                    ++e+++kge++ 
     EGE27473.1 176 MAYSGRCLLSGYINKRDANQGTCTNACRWNYNtykavenetgdivpanpevfvpsqgeisnvnlngdvvmdddyvekpsdevvlIEEQGRKGELMA 271
                    ***********************************************************************************777777******* PP

  Peptidase_U32 141 ieedekgtyllspkdlclieelpelleaGvdslKIeGRmkspeyvatvvrvYreaidallagreevkeelkeeleklanrgltsgfllgr 230
                    ++ede+gty++++kdl+++e +p+l+++Gv+slKIeGR+ks +yva++++vYr+aid++lag+ +++ +l  +l+ lanrg+t+gfl ++
     EGE27473.1 272 MYEDEHGTYIMNSKDLRAVELVPDLVNMGVHSLKIEGRTKSHYYVARTAQVYRRAIDDALAGK-PFDTSLITALDGLANRGYTEGFLRRH 360
                    ***************************************************************.***********************988 PP

>> Peptidase_U32_C  Peptidase family U32 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   3.6e-22   2.1e-18       2      80 ..     377     454 ..     376     455 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 3.6e-22
  Peptidase_U32_C   2 eydfvGevlsydeeglaeveqRNkfsvGdelEvltPkgenveftveelydedgeeievaphpgqkvkiklp.velepgdi 80 
                      +++fv+evl+  ++  +++e++Nk+ vGd +E++tPkg n ++t+ +++d++g++i+ a ++g++ kik p  +++++d+
       EGE27473.1 377 HQQFVAEVLDISDD-FLTLEIKNKLMVGDDIEIMTPKG-NLTYTLAKMWDKKGNAIDGALGSGWIAKIKNPfSDISHNDL 454
                      58*******99986.***********************.*****************************988777888876 PP

>> Tachystatin_B  Antimicrobial chitin binding protein tachystatin B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.9   1.9e-05      0.11       5      37 ..     169     198 ..     166     206 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
  Tachystatin_B   5 lfrGarCrvysGrsCCfGyyCrrdfPGsifGtC 37 
                    +  Ga C  ysGr    Gy  +rd      GtC
     EGE27473.1 169 FVHGALCMAYSGRCLLSGYINKRDANQ---GTC 198
                    568********************9643...444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3509.73
//
Query:       EGE27474.1  [L=458]
Description: hypothetical protein EA1_02387 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-20   73.4  25.0    2.7e-20   73.4  25.0    1.9  2  AAA_15           AAA ATPase domain
    1.2e-18   67.9   4.8    2.4e-16   60.4   4.8    2.7  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.7e-07   30.3   1.3    2.2e-06   27.3   1.3    2.1  1  SMC_N            RecF/RecN/SMC N terminal domain
    8.1e-05   23.2   6.5    0.00043   20.8   0.5    3.4  3  ABC_tran         ABC transporter
    9.4e-05   21.8   0.6       0.39    9.9   0.1    2.5  2  DUF2813          Protein of unknown function (DUF2813)
     0.0025   17.5   0.1      0.014   15.1   0.0    2.1  2  AAA_29           P-loop containing region of AAA domain
     0.0037   14.9   0.0      0.076   10.5   0.0    2.1  2  DUF3584          Protein of unknown function (DUF3584)
  ------ inclusion threshold ------
      0.017   15.7  17.8      0.011   16.3  14.2    2.6  2  AAA_23           AAA domain
      0.067   13.7   0.4       0.23   12.0   0.1    2.1  2  AAA_18           AAA domain
      0.078   12.7   0.0       0.16   11.7   0.0    1.6  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.88    9.6   4.7        2.2    8.3   0.1    3.1  3  AAA_14           AAA domain


Domain annotation for each model (and alignments):
>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4  25.0   1.7e-23   2.7e-20       7     369 .]       9     398 ..       7     398 .. 0.70
   2 ?   -3.0   0.4       2.8   4.6e+03     217     250 ..     417     450 ..     405     455 .. 0.41

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 1.7e-23
      AAA_15   7 kikNFRslkdveidlseeltvliGkNnsGKSsilealdlFlnnkekkn........................kkvikiekedleifeniseskdikIdv 81 
                 k++ FR+++++ei+l+  +tv+ G N++GKS++ ++l++     ++++                         + +++e+++ ++   + +++dikI+ 
  EGE27474.1   9 KVEDFRAISQAEIKLDG-ITVVAGVNGCGKSTLSKLLYWVYRGATDFKvladiqfrkdlegvnklvmlfvqtAQHHFLEEQNNNEI--TTNNIDIKIQ- 103
                 8999*************.**************************9999***************99987665533333333332222..4555555554. PP

      AAA_15  82 ef.......................aekekakeyektlkskekkkadlll.....kkkesdlkktikdkklklkknelsdekisvekkkskkelpkeke 152
                                               +++++++ ++ ++k +++       +++++ + +++ ++ +++k     +e+i + ++ +   + ++k 
  EGE27474.1 104 -RmsymtevisilpdwhdlyrlegvN----QQDFIDFFDTAKQKLNEIGNepysaENIIKIFNDIFDEERIEIK----ETENIFDVNIFDFLADLTNKI 193
                 .2446888888888888888665531....33333444433333333222000003333333333333333333....334444444444555555555 PP

      AAA_15 153 eklekekeelkidkedlkklikkleeslkkeeelknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklke 251
                 ++++k+++++k      + l ++++e++  +  l+n+l+ +  +l +++ + ++ + ++   + +++ ++  +  +           e  ++++eklk+
  EGE27474.1 194 FDEHKKNTSIK----PRRFLDNQIKEIFHTKN-LPNLLEISENELPIFKTDYEFLSGLYWIDNVIYIDTPMFFQNYG---------VEHWNDVNEKLKK 278
                 55555555554....44445555556665666.89999999999999999999999999998888888887777764.........5667777777777 PP

      AAA_15 252 idkklaeelk.....kilkkkidkik.kfnykgkkneeieik.ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkv 343
                 + k+++++++       +k+ + + +  +++++ ++ ++ i  ++ e++l +  +G++ + +l+ll  +++ +     +  +l+++EPEahLHpq   +
  EGE27474.1 279 QPKYYSDKINtkeidTLIKNEVLTGQaEIKFNELNDSFTFITpTGAEIDLGDGATGIKAFAVLSLLVKNKSIN-----DKTLLILDEPEAHLHPQWIIE 372
                 777777777764444556666666555555555555555555***********************99999999.....99******************* PP

      AAA_15 344 likllkelandnktQviitTHSphii 369
                 + +ll  + +    ++++ THSp ++
  EGE27474.1 373 FGRLLTLIHKYIGAKIFVATHSPDMV 398
                 ************99*********997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.8
      AAA_15 217 llgklkekileealqekleeelteklkeiqeklk 250
                 +l k++e+++ + +++ l+ e+ +++++++ +l+
  EGE27474.1 417 YLAKADENKNGQFIYQDLNGEIDDIFSSFNISLD 450
                 3333333333333333334444444444444444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   4.8   1.5e-19   2.4e-16       1     301 [.      26     397 ..      26     399 .. 0.66

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.5e-19
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarl.................................drdvegltdelsggggirkipslldlydpeipfefeieefl 66 
                 ++v+ G Ng+GKS+L ++l+++ r                                  + + ++ +                                 
  EGE27474.1  26 ITVVAGVNGCGKSTLSKLLYWVYRGatdfkvladiqfrkdlegvnklvmlfvqtaqhhFLEEQNNNE------------------------------IT 94 
                 79********************775666555444443222222222222222222222222222222..............................22 PP

      AAA_21  67 sqgvryryglrlersqveeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrker 165
                 +++++++     +     + ++s  +++ + + l   +  ++ +f+++a+     + ++   + ++++ ++++f + +++i+++ + +  +  +++  +
  EGE27474.1  95 TNNIDIKIQRMSY----MTEVISILPDWHDLYRLEGVNQQDFIDFFDTAKQKLNEIGNEPYSAENIIKIFNDIFDEERIEIKETENIFDVNIFDFL--A 187
                 2222222222222....2222444444455555555555555555555555555555555555566666666666666666666666666666666..5 PP

      AAA_21 166 igllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrer............................................. 219
                  +++ if+++ +  ++k++++ l +++k+++       + ++l+++    ++e                                              
  EGE27474.1 188 DLTNKIFDEHKKNTSIKPRRF-LDNQIKEIF-------HTKNLPNLLEISENELpifktdyeflsglywidnviyidtpmffqnygvehwndvneklkk 278
                 555555555554444444444.333333333.......2222222222222222455566777778888888999999********************* PP

      AAA_21 220 ...................................gvvflengdgqelparelSdGtkrllalltallralkkg..sllliDEpEngLHPkllrrllel 281
                                                    +++++  + g e+++ +   G k + a+l++l    + +  +ll++DEpE++LHP+++ ++ +l
  EGE27474.1 279 qpkyysdkintkeidtliknevltgqaeikfnelnDSFTFITPTGAEIDLGDGATGIKAF-AVLSLLVKNKSINdkTLLILDEPEAHLHPQWIIEFGRL 376
                 ************************************************************.999999988887799*********************** PP

      AAA_21 282 lkelsr.ngaQviltTHSpll 301
                 l + ++  ga+++++THSp  
  EGE27474.1 377 LTLIHKyIGAKIFVATHSPDM 397
                 *66666679**********76 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   1.3   1.3e-09   2.2e-06       5     204 ..       8     400 ..       6     407 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.3e-09
                 EEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHC.TT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSC..EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
       SMC_N   5 leienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvL.Gersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekee..vsis 100
                 l++e+F+ +   +++++++  +t++ G NG+GKs l   + +v  G ++ k l   ++++ +   ++   +   + + +f +e+++ +i++++  ++i+
  EGE27474.1   8 LKVEDFRAIS--QAEIKLDG-ITVVAGVNGCGKSTLSKLLYWVYrGATDFKVLADIQFRKDLEGVNKLVMLFVQTAQHHFLEEQNNNEITTNNidIKIQ 103
                 68999**995..77777765.*********************984666666666656555555533333333334455554444443444444004444 PP

                 EEEETTSEEEEEE........TTEEE-HHHHHHHHHCTT-STT........................................................ CS
                 xxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxx........................................................ RF
       SMC_N 101 rrvkrkgeseyki........ngkevtkkevsellesagiske........................................................ 135
                 r  + ++   + i          + v++++  +++ +a+ + +                                                        
  EGE27474.1 104 RMSYMTEV--ISIlpdwhdlyRLEGVNQQDFIDFFDTAKQKLNeignepysaeniikifndifdeerieiketenifdvnifdfladltnkifdehkkn 200
                 44444443..33333333333344466677777777666666699****************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  EGE27474.1 201 tsikprrfldnqikeifhtknlpnlleisenelpifktdyeflsglywidnviyidtpmffqnygvehwndvneklkkqpkyysdkintkeidtlikne 299
                 *************************************************************************************************** PP

                 ..............................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHC CS
                 ..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
       SMC_N 136 ..............................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreeml 202
                                                   G k+ + l+Ll+  ++++ + l +lDe +a+L  + + ++ +ll   +k   a ++v +++ +m+
  EGE27474.1 300 vltgqaeikfnelndsftfitptgaeidlgDGATGIKAFAVLSLLVKNKSINDKTLLILDEPEAHLHPQWIIEFGRLLTLIHKYigAKIFVATHSPDMV 398
                 ***************************76666678899999****************************999888888855554449*********999 PP

                 CC CS
                 xx RF
       SMC_N 203 ek 204
                 + 
  EGE27474.1 399 QA 400
                 86 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.5   2.6e-07   0.00043       7      80 ..      20     103 ..      16     175 .. 0.66
   2 ?    2.2   0.3      0.15   2.5e+02      46      80 ..     198     267 ..     156     308 .. 0.72
   3 ?    1.6   0.0      0.23   3.8e+02     124     136 ..     350     362 ..     342     363 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.6e-07
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG.B-HHHCCHCEEEE-SS.--S-TTSBHHHH..........H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxx..........x RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke.qeleslrkeigvlpqe.pqlfpeltvren..........e 80 
                 ++k + ++++ G nG+GKStL kll+  ++ + +    +  +d++  ++le ++k +  + q+ +++f e ++ ++          +
  EGE27474.1  20 EIKLDGITVVAGVNGCGKSTLSKLLYWVYRGATDF---KvLADIQFrKDLEGVNKLVMLFVQTaQHHFLEEQNNNEittnnidikiQ 103
                 677888999*****************999864443...2233444434677777777777777433333332222245555554441 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.15
                 TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...................................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................x RF
    ABC_tran  46 gkdlkeqeleslrkeigvlpqepqlfpeltvren...................................e 80 
                 +k+++ +++++l+++i+ ++++++l + l++ en                                   e
  EGE27474.1 198 KKNTSIKPRRFLDNQIKEIFHTKNLPNLLEISENelpifktdyeflsglywidnviyidtpmffqnygvE 267
                 334444889*******************99*999999887777777777766666666555555554441 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.23
                 HHTSSEEEEESTT CS
                 xxxxxxxxxxxxx RF
    ABC_tran 124 lkkpkllllDEpt 136
                 +++++ll+lDEp 
  EGE27474.1 350 INDKTLLILDEPE 362
                 78899******96 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00024      0.39       7      94 ..       9      90 ..       6     114 .. 0.71
   2 !    9.7   0.1   0.00029      0.47     283     311 ..     352     380 ..     334     402 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00024
     DUF2813  7 eisGFRGinrLSlsleentvLiGENaWGKSSLldALslilnvekelyqFtlkDFhvdeseeeeqekhlqlvltfkeeekeeekarryk 94
                 +  FR i +  ++l+  tv+ G N  GKS L + L  ++   +++       F        + e   +lv+ f ++++++  +++++
  EGE27474.1  9 KVEDFRAISQAEIKLDGITVVAGVNGCGKSTLSKLLYWVYRGATDFKVLADIQFRK------DLEGVNKLVMLFVQTAQHHFLEEQNN 90
                5788****************************999999888777665555444442......22333356666777777666666554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00029
     DUF2813 283 arPilllEdpearLHPtmlaiaWellell 311
                  + +l+l++pea+LHP+ +  + +ll+l+
  EGE27474.1 352 DKTLLILDEPEAHLHPQWIIEFGRLLTLI 380
                 6789****************999999865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.7e-06     0.014      12      38 ..      13      40 ..       8      43 .. 0.88
   2 ?   -1.3   0.0       1.1   1.8e+03      44      56 ..     299     311 ..     294     314 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.7e-06
      AAA_29 12 fdg.htieidlkgatlltGpsGsGKSTl 38
                f+   ++ei+l+g+t+++G +G GKSTl
  EGE27474.1 13 FRAiSQAEIKLDGITVVAGVNGCGKSTL 40
                556677889999***************8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.1
      AAA_29  44 alLvpakkvrfNk 56 
                  +L+++ +++fN+
  EGE27474.1 299 EVLTGQAEIKFNE 311
                 5999*******97 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   4.7e-05     0.076      12      37 ..      19      44 ..      17      66 .. 0.86
   2 ?    1.9   0.0     0.019        31     120     173 ..     267     319 ..     256     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.7e-05
     DUF3584 12 aeldldghtnieGtNaaGKTtLlrLi 37
                ae++ldg t + G+N+ GK tL +L+
  EGE27474.1 19 AEIKLDGITVVAGVNGCGKSTLSKLL 44
                59*********************998 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.019
     DUF3584 120 etveelikelrnngiqvskllntteYRaiIqNdrsllgrerkelrelaaqfslc 173
                 e  +++ ++l+++    s ++nt+e    I+N+  l+g+ + +  el   f + 
  EGE27474.1 267 EHWNDVNEKLKKQPKYYSDKINTKEIDTLIKNE-VLTGQAEIKFNELNDSFTFI 319
                 6678999**************************.55699999*****9999985 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.3  14.2   6.7e-06     0.011       2     170 ..       8     224 ..       8     354 .. 0.68
   2 ?   -2.5   0.1       3.8   6.2e+03     106     131 ..     423     448 ..     397     457 .. 0.48

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.7e-06
      AAA_23   2 LkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrks..................grgfeksdveiese...........gkv 71 
                 Lk+e fr ++  ei ++ g+t++ G NG+GK+T+   + ++  g t +++                                  +           ++ 
  EGE27474.1   8 LKVEDFRAISQAEIKLD-GITVVAGVNGCGKSTLSKLLYWVYRGAT-DFKVLAdiqfrkdlegvnklvmlfV------------QtaqhhfleeqnNN- 91 
                 799**************.*******************999999954.3444332444444444444333321............02222221111122. PP

      AAA_23  72 kayveltfenkdgry....................trsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkd 150
                               +                        ++    + +  +++++ +++ + +++l+++ +e ++ ++ii  + +++++er e +e+++
  EGE27474.1  92 --------------EittnnidikiqrmsymteviSILPDWHDLYRLEGVNQQDFIDFFDTAKQKLNEIGNEPYSAENIIKIFNDIFDEERIEIKETEN 176
                 ..............1222222222233444556665556666666666667777778888888888888888888888877777778888876777766 PP

      AAA_23 151 kke............................rleelekeleeledekk 170
                  ++                             l++ +ke+ + ++  +
  EGE27474.1 177 IFDvnifdfladltnkifdehkkntsikprrFLDNQIKEIFHTKNLPN 224
                 666666663333333333333333344444433333333333333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.8
      AAA_23 106 kaklelleideleqfisellgskkii 131
                 ++k  ++  ++l+ +i+++++s++i+
  EGE27474.1 423 ENKNGQFIYQDLNGEIDDIFSSFNIS 448
                 22222223334444444444444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00014      0.23       2      65 ..      28     116 ..      28     140 .. 0.56
   2 ?   -1.8   0.0       2.6   4.3e+03      60      60 ..     193     193 ..     137     258 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
      AAA_18   2 lltGtpGvGKttlakeL..................skrlgf........gvnlrdvakenglllevdpe...aldeskrldedkldklldale 65 
                 +++G+ G+GK+tl+k L                  +             +    ++a+++ l++ +++e      + k+ ++ ++ +++++l 
  EGE27474.1  28 VVAGVNGCGKSTLSKLLywvyrgatdfkvladiqfR----KdlegvnklVMLFVQTAQHHFLEEQNNNEittNNIDIKIQRMSYMTEVISILP 116
                 589**************7766544443333333332....03333355544444444444444444444444344555555555555555555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.6
      AAA_18  60 l 60 
                 +
  EGE27474.1 193 I 193
                 2 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.5e-05      0.16       1      16 [.      27      42 ..      27      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.5e-05
  Viral_helicase1  1 ivvhGvpGcGKStlir 16
                     +vv+Gv GcGKStl +
       EGE27474.1 27 TVVAGVNGCGKSTLSK 42
                     69***********654 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0014       2.2       4      24 ..      26      46 ..      24     115 .. 0.75
   2 ?   -2.2   0.4       2.5   4.1e+03      54      54 ..     180     180 ..     136     222 .. 0.51
   3 ?    2.1   0.0      0.11   1.8e+02      55      77 ..     343     367 ..     313     441 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0014
      AAA_14  4 ilvitGaRrvGKTtllkqlik 24
                i v+ G+  +GK+tl k l+ 
  EGE27474.1 26 ITVVAGVNGCGKSTLSKLLYW 46
                889************887764 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
      AAA_14  54 e 54 
                  
  EGE27474.1 180 V 180
                 1 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.11
      AAA_14  55 lileklkeekktylflDEiqev..p 77 
                 l+ ++ + ++kt+l+lDE      p
  EGE27474.1 343 LLVKNKSINDKTLLILDEPEAHlhP 367
                 34443222689******96554442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3331.50
//
Query:       EGE27475.1  [L=180]
Description: hypothetical protein EA1_02392 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1474.89
//
Query:       EGE27476.1  [L=32]
Description: hypothetical protein EA1_02397 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        85  (0.00474092); expected 358.6 (0.02)
Passed bias filter:                       72  (0.00401584); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.21s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 278.56
//
Query:       EGE27477.1  [L=86]
Description: 4Fe-4S ferredoxin [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-08   33.7  10.0    5.5e-08   33.3  10.0    1.3  1  Fer4_7       4Fe-4S dicluster domain
    1.6e-07   30.9  19.7    8.9e-06   25.3   4.1    3.1  3  Fer4         4Fe-4S binding domain
    1.7e-06   28.1  11.3    6.6e-06   26.2  11.9    1.6  2  Fer4_9       4Fe-4S dicluster domain
    0.00024   21.0  13.3      0.017   15.2   2.2    2.3  2  Fer4_2       4Fe-4S binding domain
    0.00038   20.5  13.0      0.034   14.2   2.3    2.1  2  Fer4_10      4Fe-4S dicluster domain
    0.00038   20.5  15.4    0.00065   19.8  15.4    1.4  1  Fer4_21      4Fe-4S dicluster domain
     0.0027   17.5   6.9     0.0032   17.2   6.9    1.2  1  GF_recep_IV  Growth factor receptor domain IV
  ------ inclusion threshold ------
       0.04   14.8  14.1      0.076   14.0   6.0    2.4  2  Fer4_16      4Fe-4S double cluster binding domain
       0.11   13.0  13.2       0.13   12.8   3.9    2.5  3  Fer4_17      4Fe-4S dicluster domain
       0.21   12.1  11.1        4.8    7.7  11.1    2.2  1  Fer4_8       4Fe-4S dicluster domain
        1.2   10.2  15.4        1.6    9.8   3.0    2.3  2  Fer4_3       4Fe-4S binding domain
        2.2    8.5  21.2       0.35   11.0   5.2    3.1  2  Fer4_6       4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3  10.0   3.7e-11   5.5e-08       2      51 ..       9      60 ..       8      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.7e-11
      Fer4_7  2 CigCgaCvaaCpvkaieldeeenekgtekveidpekClgC......gaCvavCPtg 51
                Ci+C  C++ Cp++ai++d++    g+++++i+p+ C+ C        C +vCP +
  EGE27477.1  9 CINCDICEPECPNDAISYDQK----GQKTYVINPDLCTEClgfydePTCDKVCPID 60
                ******************997....8999***********66665446******75 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   4.1     6e-09   8.9e-06       5      24 .]       6      25 ..       2      25 .. 0.90
   2 !    9.9   0.2   0.00044      0.66       1      11 [.      34      44 ..      34      45 .. 0.93
   3 ?    5.3   2.7     0.013        19      14      23 ..      53      62 ..      52      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 6e-09
                TTTSSS-THHHHHSTTTEEE CS
        Fer4  5 eekCigCGaCvevCPvgAIt 24
                + +Ci+C +C+  CP++AI+
  EGE27477.1  6 TTDCINCDICEPECPNDAIS 25
                679***************96 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00044
                EEEETTTSSS- CS
        Fer4  1 vvideekCigC 11
                +vi++++C+ C
  EGE27477.1 34 YVINPDLCTEC 44
                69********* PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.013
                HHHHSTTTEE CS
        Fer4 14 CvevCPvgAI 23
                C +vCP ++I
  EGE27477.1 53 CDKVCPIDCI 62
                999******9 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2  11.9   4.4e-09   6.6e-06       1      51 []       8      62 ..       8      62 .. 0.92
   2 !    7.9   3.3    0.0024       3.5       2      25 ..      41      70 ..      40      77 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 4.4e-09
      Fer4_9  1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga......CveaCpkgai 51
                +C++C+ C++ Cp++++++d++++k  + + +   C++C        C ++Cp ++i
  EGE27477.1  8 DCINCDICEPECPNDAISYDQKGQKTYVINPD--LCTECLGfydeptCDKVCPIDCI 62
                5************************9997775..5*****99***********8876 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0024
      Fer4_9  2 CtgC......gaCveaCpagvvvedaaerk 25
                Ct+C       +C ++Cp + +++d+++ +
  EGE27477.1 41 CTEClgfydePTCDKVCPIDCIIKDDSRPE 70
                999987776656******999999887765 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   3.5   0.00021      0.32       7      22 .]       7      21 ..       2      21 .. 0.84
   2 !   15.2   2.2   1.2e-05     0.017       3      21 ..      34      58 ..      32      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
      Fer4_2  7 tdrCigCgaCvsaCPa 22
                td Ci+C +C   CP+
  EGE27477.1  7 TD-CINCDICEPECPN 21
                45.************5 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.2e-05
      Fer4_2  3 vvvdtdrCigCg......aCvsaCP 21
                +v+++d C++C       +C ++CP
  EGE27477.1 34 YVINPDLCTECLgfydepTCDKVCP 58
                689********5588999******9 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   8.1   0.00014      0.21       6      48 ..       6      44 ..       1      44 [. 0.80
   2 !   14.2   2.3   2.3e-05     0.034       3      24 ..      35      63 ..      33      83 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
     Fer4_10  6 ddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgc 48
                +  Ci+C  C   CP     +  ++ ++++++  ++++ Ct+c
  EGE27477.1  6 TTDCINCDICEPECPN----DAISYDQKGQKTYVINPDLCTEC 44
                568*************....77777777777777788889888 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.3e-05
     Fer4_10  3 vidddtCirCg......kCvkaCPadl.t 24
                vi++d C++C       +C k+CP d   
  EGE27477.1 35 VINPDLCTECLgfydepTCDKVCPIDCiI 63
                89********9999999*******97642 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8  15.4   4.3e-07   0.00065       6      57 ..       7      62 ..       3      64 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.3e-07
     Fer4_21  6 dkCigCgkCliaCedtshqaieidaktvlkvv..edeCvGC......nlCssvCPvedci 57
                 +Ci+C  C   C++   +ai++d+k + ++v   d C+ C        C +vCP+ dci
  EGE27477.1  7 TDCINCDICEPECPN---DAISYDQKGQKTYVinPDLCTEClgfydePTCDKVCPI-DCI 62
                58************5...***9998755544333899****55555448******9.998 PP

>> GF_recep_IV  Growth factor receptor domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   6.9   2.2e-06    0.0032      49      96 ..      10      62 ..       2      78 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.2e-06
  GF_recep_IV 49 kkCvkChpeCeklnes.....etCsgpgadeClkCahfkdgseCvseCPegvk 96
                  +C  C+peC +   s     +  +  ++d C++C  f d+++C + CP +  
   EGE27477.1 10 INCDICEPECPNDAISydqkgQKTYVINPDLCTECLGFYDEPTCDKVCPIDCI 62
                 57999*****6543321122367778899********************8754 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   6.0   5.1e-05     0.076       2      22 ..       9      29 ..       8      51 .. 0.77
   2 ?    3.0   4.3      0.13     2e+02       7      20 ..      52      65 ..      40      83 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.1e-05
     Fer4_16  2 CgtCgkCaevCPtnaikekke 22
                C++C  C   CP +ai+ +++
  EGE27477.1  9 CINCDICEPECPNDAISYDQK 29
                *****************8733 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.13
     Fer4_16  7 kCaevCPtnaikek 20
                 C +vCP ++i ++
  EGE27477.1 52 TCDKVCPIDCIIKD 65
                49999999998877 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.9   8.6e-05      0.13      44      59 ..       7      22 ..       3      24 .. 0.84
   2 ?    3.2  14.2     0.085   1.3e+02       2      17 ..       9      24 ..       8      62 .. 0.72
   3 ?    4.1   2.1     0.047        70       2      28 ..      41      78 ..      40      85 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.6e-05
     Fer4_17 44 slCieCgeCerkCPqg 59
                 +Ci+C  Ce +CP++
  EGE27477.1  7 TDCINCDICEPECPND 22
                6899999999999986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.085
     Fer4_17  2 CiqCgyClpeCpsyea 17
                Ci+C  C+peCp  ++
  EGE27477.1  9 CINCDICEPECPNDAI 24
                7777777777776544 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.047
     Fer4_17  2 CiqCgy......ClpeCpsyea.....ydnepkkllra 28
                C++C        C ++Cp   +     +++ p++l+++
  EGE27477.1 41 CTECLGfydeptCDKVCPIDCIikddsRPETPDELMAK 78
                77776333555599999984441222233345566665 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  11.1    0.0032       4.8       4      63 ..       8      59 ..       5      61 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0032
      Fer4_8  4 kCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcga......CtevCpv 63
                +Ci+C  C+ +Cp     +  ++d++g+++  v + +          Ct+c        C++vCp+
  EGE27477.1  8 DCINCDICEPECP----NDAISYDQKGQKTY-VINPDL---------CTECLGfydeptCDKVCPI 59
                7***********9....45566677777444.666666.........6666655668999999997 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.0    0.0011       1.6       1      15 []       9      23 ..       9      23 .. 0.97
   2 ?    6.1   4.7     0.017        25       1      14 [.      41      60 ..      41      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
      Fer4_3  1 CtgCgaCvevCPvgA 15
                C++C  C+  CP++A
  EGE27477.1  9 CINCDICEPECPNDA 23
                ************998 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.017
      Fer4_3  1 CtgC.g.....aCvevCPvg 14
                Ct C g     +C +vCP +
  EGE27477.1 41 CTEClGfydepTCDKVCPID 60
                999*75789999******75 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.2   0.00024      0.35       9      24 .]       9      24 ..       6      24 .. 0.94
   2 ?    1.3   8.1      0.29   4.3e+02       3      20 ..      35      58 ..      35      62 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
      Fer4_6  9 CigCgdCvrvCPegai 24
                Ci C+ C+  CP +ai
  EGE27477.1  9 CINCDICEPECPNDAI 24
                ************9997 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
      Fer4_6  3 eidpdkCigC.gd.....CvrvCP 20
                +i+pd+C+ C g      C +vCP
  EGE27477.1 35 VINPDLCTEClGFydeptCDKVCP 58
                69*******966566666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 649.47
//
Query:       EGE27478.1  [L=148]
Description: Yqey-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-46  156.0   9.5    6.9e-46  155.9   9.5    1.0  1  YqeY             Yqey-like protein
  ------ inclusion threshold ------
       0.02   14.8   0.4       0.02   14.8   0.4    2.2  2  GatB_Yqey        GatB domain
        0.2   12.3   1.4       0.41   11.4   1.4    1.6  1  Vir_act_alpha_C  Virulence activator alpha C-term
       0.97    9.4   7.4       0.76    9.8   4.9    1.9  2  DUF1216          Protein of unknown function (DUF1216)


Domain annotation for each model (and alignments):
>> YqeY  Yqey-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.9   9.5   1.5e-49   6.9e-46       1     143 []       4     146 ..       4     146 .. 0.99

  Alignments for each domain:
  == domain 1  score: 155.9 bits;  conditional E-value: 1.5e-49
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS-----HHHHHHH CS
        YqeY   1 keklkedlkeamkakdkerlstlrllkaaikqeevderkelsdeevlkvlakevkqRresieefekagRedlaekekaEievleeYlPeqlseeeieal 99 
                 k+ l++ +k++mka++ e +++lr ++aaik+ e+d++++l+d++vl++l+k++kqR+es+++++++gR+dla+kek Eiev+ ++lP+ql+e+ ++++
  EGE27478.1   4 KDSLTQTIKSSMKAREMEVVKILRNVQAAIKKVEIDHQTTLDDNAVLELLQKQIKQRQESLDIYQANGRDDLAAKEKFEIEVIGQFLPAQLDEAALNDI 102
                 6789*********************************************************************************************** PP

                 HHHHHHHTT--BGGGHHHHHHHHHHHHTTTS-HHHHHHHHHHH- CS
        YqeY 100 vkeaiaevgaesmkdmGkvmkalkpkvkGkaDgkkvsalvkekL 143
                 ++++i+e++a+smkdmG+vm+a+k+k+ G+aD + +s lvk+ L
  EGE27478.1 103 IAATITELEANSMKDMGRVMNAVKEKTVGQADPAIISGLVKKAL 146
                 *****************************************987 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.3     0.019        86      77     115 ..      30      70 ..       4      78 .. 0.71
   2 ?   14.8   0.4   4.5e-06      0.02      95     148 .]      96     146 ..      88     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.019
                 HHHHHHCTXXXXX..XSSXHHHHHHHHHHTXHHHHHHHTTX CS
   GatB_Yqey  77 eeiieekgLkqis..deeeleklveeviaenpkavedyksg 115
                 +++i++ ++   +  d++++ +l+++ i++ +++++ y++ 
  EGE27478.1  30 QAAIKKVEIDHQTtlDDNAVLELLQKQIKQRQESLDIYQAN 70 
                 44555555543333577999999999999999999988765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4.5e-06
                 HHHHHHHHHTXHHHHHHHTTXXTTSTHHHHHHHHHTTSSXSXHHHHHHHHHHHS CS
   GatB_Yqey  95 eklveeviaenpkavedyksgkekalkflvGqvMkktkGkadpklvnellkekL 148
                 e++++++ia+    + ++++  +k ++  +  v  kt G+adp++++ l+k+ L
  EGE27478.1  96 EAALNDIIAAT---ITELEANSMKDMGRVMNAVKEKTVGQADPAIISGLVKKAL 146
                 56677788877...89999999999**************************987 PP

>> Vir_act_alpha_C  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.4   9.1e-05      0.41      14      46 ..      43      78 ..      41     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.1e-05
  Vir_act_alpha_C 14 vldpealieeLerrreeheekLaeyeeieerl...e 46
                      ld +a++e+L+++ ++++e L+ y++  +++   +
       EGE27478.1 43 TLDDNAVLELLQKQIKQRQESLDIYQANGRDDlaaK 78
                     5899**********************6655555541 PP

>> DUF1216  Protein of unknown function (DUF1216)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.9   0.00017      0.76      44      99 ..       4      58 ..       1      64 [. 0.82
   2 ?   -0.3   0.0      0.22   9.9e+02      56      79 ..     108     132 ..      97     137 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00017
     DUF1216 44 klsksgevkkslqeeqqevmktlkelqsvaskivsekkskkegsltltseqqkeik 99
                k s    +k+s++  ++ev+k l+ +q++++k+ +++++  ++ + l + q+ +ik
  EGE27478.1  4 KDSLTQTIKSSMKAREMEVVKILRNVQAAIKKVEIDHQTTLDDNAVLELLQK-QIK 58
                5577789***************************998888777777766654.355 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.22
     DUF1216  56 qeeqqevmktl.kelqsvaskivse 79 
                  e + + mk + + +++v++k v++
  EGE27478.1 108 TELEANSMKDMgRVMNAVKEKTVGQ 132
                 4445555555535677777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1461  (0.0814881); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1177.49
//
Query:       EGE27479.1  [L=278]
Description: uroporphyrin-III C/tetrapyrrole methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-27   96.2   0.0    3.9e-27   95.6   0.0    1.3  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   2.2e-31   3.9e-27       1     212 [.       4     204 ..       4     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 2.2e-31
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaeal..aealragkdVvllv.sGDPlvyg 94 
                   +ly+V +++G+  ++T  A+ +lk++ +++++d+r+++ ll++ +        ++++   +  ++++  +++  +e+l++g+ V+l++ +G Plv++
    EGE27479.1   4 TLYIVSTPIGNLSDMTEHAISTLKSVNLIACEDTRTSSKLLKHFNI-------TTPT--IAYHEHNADKQTVhlIEKLNSGQSVALISdAGTPLVSD 91 
                   69*******************************9999999877643.......2333..333445555555555*********************** PP

  TP_methylase  95 tgselvealrareagieveviPGvsslqaaaarlgiplteggevlsvllpglakeeereleallangdtlvllkaprklaelaelLkealyddttpv 191
                   +g +lv+a  +  +gi++  i G +++ aa + +g+p + +  + ++   +++  + + l ++ a ++tl++++ap+++ + ++++++   + t+++
    EGE27479.1  92 PGYRLVKASHE--HGINTVPIVGACAAIAALSVAGLPSDRFTFAGFLP--AKSHGRLKALQHWQACTQTLIFYEAPHRIVDSLTDMMTV-FGATREA 183
                   ******88888..9***********************99777776666..55666777777777778**********966666666666.47799** PP

  TP_methylase 192 avveragtedervvrgtleel 212
                   +++++++++ e++ + +l+el
    EGE27479.1 184 TLCRELTKTFETIKKLPLGEL 204
                   ******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2049.19
//
Query:       EGE27480.1  [L=224]
Description: cell division checkpoint GTPase YihA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-18   67.2   0.0    2.2e-18   66.4   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
    1.8e-06   27.6   0.0    3.6e-06   26.6   0.0    1.5  1  FeoB_N       Ferrous iron transport protein B
    6.5e-06   26.1   0.0      0.037   13.9   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
     0.0017   18.4   0.0      0.061   13.4   0.1    2.3  2  Dynamin_N    Dynamin family
     0.0057   16.0   0.0      0.017   14.4   0.0    1.7  2  AIG1         AIG1 family


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   6.2e-22   2.2e-18       1     114 []      32     151 ..      32     151 .. 0.84

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 6.2e-22
                 EEEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS......SHHHHHH.HHHHHHHHHHC.TSEEEEEEETTTTC CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvklkgkeielvDtpGli......egaseek.glgkaflalee.adlillvvdaseek 89 
                 eva++Gr+N+GKS+ in++t +   a+ s++pg T+ in++ v   +++ ++vD+pG +      e+ + ++ ++ +++l  ++    ++l+ d++ + 
  EGE27480.1  32 EVAFAGRSNAGKSSAINTITHQkqLARSSKTPGRTQMINFFMVG--DEQARIVDLPG-YgyaavpESMKIKWqKELEDYLVSRQsLAGLVLMTDIR-HP 126
                 69******************985569***************998..899********.634443347777777666667766663699******99.77 PP

                 SHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  90 lkpldeeleelleeakkplilvlnk 114
                 lk  de++  + ++ k p+ ++l+k
  EGE27480.1 127 LKYFDEQMLHWAKDGKLPVHVLLTK 151
                 8999*******99899999988887 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   9.9e-10   3.6e-06       2     152 ..      32     194 ..      31     197 .. 0.64

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 9.9e-10
                 EEEEEESTTSSHHHHHHHHHTTSE..EEEESTTSSSEEEEEEEEETTEEEEEEE----.SSSSSSSHH...HHHHHHHHH.CTSSSEEEEEEEGGGHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakq..kvgNwpGvtvekkegklklkgkeveivDlPGi.Yslsaysee...ekvardfll.eeepdvvvnvvdatnler 93 
                 +va++G  n+Gk++ +n++t +kq  + +  pG t       + + +++++ivDlPG  Y+  + s+    +k  +d+l+ +++   +v + d  +  +
  EGE27480.1  32 EVAFAGRSNAGKSSAINTITHQKQlaRSSKTPGRTQ--MINFFMVGDEQARIVDLPGYgYAAVPESMKikwQKELEDYLVsRQSLAGLVLMTDIRHPLK 128
                 699******************998334567778774..445566679**********778886666551123344566662455666777777777666 PP

                 HH..HHHHHHHHTTSSEEEEEETHHHHHHTTEE...E-HHHHHHHHTS-..EEEEBTTTTBTHHHH CS
      FeoB_N  94 nL..yLtlqllelgvpvvlalnmideaekkgie...idlkkLsekLgvp..vvktsakkkegieel 152
                  +  +++    + ++pv + l ++d++++   +   + +kk  e L++p  +  +sa kkeg++el
  EGE27480.1 129 YFdeQMLHWAKDGKLPVHVLLTKSDKLKRGAQKsalLATKKQLEVLDLPfsIQLFSALKKEGMDEL 194
                 442234444456678888999999988765444111333333344443322667788888888887 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     1e-05     0.037     102     160 ..      33      86 ..       6      91 .. 0.73
   2 !   10.3   0.0   0.00014      0.49      36      98 ..     132     199 ..     105     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                  EEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT.TEEEESS-S CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae.gglliDtPG 160
                  ++++G S +GKS+ in+++ +++l+     +++  G+  T+  +++ + + ++ ++D PG
   EGE27480.1  33 VAFAGRSNAGKSSAINTITHQKQLAR----SSKTPGR--TQMINFFMVGDeQARIVDLPG 86 
                  78*****************9966542....3334444..444444444332556666666 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00014
                  HHHHHHHHHTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTT..SEEEE--TTTHTTHHHHHHHCT CS
  RsgA_GTPase  36 drfLvlaeekgiepvivlnKiDlleeee...eleelkeelealg..yevllvsaktkegleelkellk 98 
                  +++L  a++ +++++++l+K D l++     +l ++k++le l+  +++ l sa +keg++el+ +l 
   EGE27480.1 132 EQMLHWAKDGKLPVHVLLTKSDKLKRGAqksALLATKKQLEVLDlpFSIQLFSALKKEGMDELALVLG 199
                  67899999****************99885555556666666666224456788889999999987765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.7e-05     0.061       1      29 [.      33      61 ..      33      79 .. 0.88
   2 ?    3.0   0.0     0.025        91     101     128 ..      77     111 ..      67     152 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
                EEEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpn 29
                +a+ G  ++GKSS +n +++++ l r++ 
  EGE27480.1 33 VAFAGRSNAGKSSAINTITHQKQLARSSK 61
                6889******************9999886 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.025
                 -SEEEEE---B-SSSGTTS......HHHHHHH.ST CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdq......elvkeyi.kk 128
                 ++  +vDlPG+   ++ +       + ++ y+  +
  EGE27480.1  77 EQARIVDLPGYGYAAVPESmkikwqKELEDYLvSR 111
                 56789*****9776666655566666666666544 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   4.8e-06     0.017       6     102 ..      36     133 ..      32     141 .. 0.68
   2 ?   -1.3   0.0      0.32   1.2e+03      45      54 ..     165     174 ..     144     221 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.8e-06
                 ESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEE.EETTEEEEEEE--SCCCTTC..C.HHCHHHHHHHHHHHCTT-ESEEEEEEETT.B-SHH CS
        AIG1   6 vGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksr.twdgkkinViDTPglfdlsv..s.adkiskeivrclllseegihalllvlslg.rftee 99 
                  G++ +GkS+++N+i  +k+   + ++ + t+   + +  ++ +++  ++D Pg     v  s + k +ke  + +l+s++++  l+l ++++  ++  
  EGE27480.1  36 AGRSNAGKSSAINTITHQKQLARSSKTPGRTQ---MINFfMVGDEQARIVDLPGYGYAAVpeSmKIKWQKELED-YLVSRQSLAGLVLMTDIRhPLKYF 130
                 69*****************9887755555444...444447777888999999974444311313445566654.888888888888888877555555 PP

                 HHH CS
        AIG1 100 dek 102
                 de+
  EGE27480.1 131 DEQ 133
                 555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.32
                 EETTEEEEEE CS
        AIG1  45 twdgkkinVi 54 
                    +k+++V 
  EGE27480.1 165 LATKKQLEVL 174
                 2333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1684.07
//
Query:       EGE27481.1  [L=41]
Description: hypothetical protein EA1_02422 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      113  (0.00630264); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 332.12
//
Query:       EGE27482.1  [L=433]
Description: homoserine dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-61  206.0   2.0    6.3e-61  205.3   0.1    2.0  2  Homoserine_dh    Homoserine dehydrogenase
    2.1e-17   63.8   0.5    4.6e-17   62.7   0.5    1.6  1  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain
      7e-12   44.9   0.1      7e-12   44.9   0.1    2.0  2  ACT              ACT domain
    0.00029   20.4   0.5     0.0076   15.7   0.5    2.4  1  AP_endonuc_2     Xylose isomerase-like TIM barrel
    0.00031   21.0   0.6    0.00085   19.6   0.6    1.8  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.005   17.4   0.2       0.02   15.5   0.2    2.0  1  ACT_4            ACT domain
  ------ inclusion threshold ------
      0.033   14.9   1.0       0.16   12.7   0.2    2.5  3  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
      0.039   14.1   0.0      0.083   13.0   0.0    1.5  1  Peptidase_S66    LD-carboxypeptidase N-terminal domain


Domain annotation for each model (and alignments):
>> Homoserine_dh  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.37   8.2e+02      57     112 ..      58     126 ..      55     131 .. 0.60
   2 !  205.3   0.1   2.8e-64   6.3e-61       1     173 []     135     313 ..     135     313 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.37
                    THHHHTTHHHHHHHHHHHHHHCTTT--GGGSEE--ST....TS-HHH..........HHHHHCTTEEEEE CS
  Homoserine_dh  57 ptdDveGlDaarKlailarlafgleveledvevegis....kltaed..........ikeakeegkvlkl 112
                     t+D++ +  a+ + i+++++ g+++ +e + ++ i+     +ta++          ++ a+e+g ++++
     EGE27482.1  58 QTADLMSIAEAKDVDIVIEVIGGTDIAYEVI-THAIRhkkhVVTANKallakhgneiFRLAEEHGVQVRY 126
                    5788999999999999999998888877766.56677555422222222222233335555555555555 PP

  == domain 2  score: 205.3 bits;  conditional E-value: 2.8e-64
                    --HHHHHHTCTTSEEEEEEEE--HHHHHHHHHHHCHTT-HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHCTTT--GGGSEE--STTS- CS
  Homoserine_dh   1 PiiktlkeilsgdritrieGilngtlnyiltemeeegasfsevlkeaqelGyaeaDptdDveGlDaarKlailarlafgleveledvevegisklt 96 
                    Piik ++e+l++++i+ ++Gi+ngt n+i+tem++++++f+evl eaq+lGyaeaDpt+DveG+Daa+Kl +la++afg++v++++v++egi+k+ 
     EGE27482.1 135 PIIKIVREALAANKIDWLTGIINGTGNFIMTEMQQKNRKFDEVLVEAQALGYAEADPTFDVEGIDAAHKLSLLASIAFGIPVQFDKVYCEGITKIG 230
                    9**********************************9999********************************************************* PP

                    HHHHHHHHCTTEEEEEEEEE......CEEEEEEEEEETTSGGGHSSST-EEEEEEESSSEEEEEEES-SSHHHHHHHHHHHHH CS
  Homoserine_dh  97 aedikeakeegkvlklvasa......vearVkpelvpkshplasvkgsenavlvetdrlgelviqGpgaGaepTAsavlsDll 173
                     +d+ +ake g+++k+++ a      +e+rV+p+l+p++  la+v+g++nav+++++ lg+ +++G gaGa +TAsav++D++
     EGE27482.1 231 LQDVIYAKELGYTIKHLGFAirrdhgIELRVHPTLIPSQALLANVNGVKNAVMIDAHPLGQSLYYGDGAGAGATASAVMADVM 313
                    ********************9998888******************************************************96 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.5   2.1e-20   4.6e-17       1     117 []      11     127 ..      11     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 2.1e-20
                    --SHHHHHHHHHHHH---S....SEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-.S--HHHHTTHHHHHHTTEEEE-S-- CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqse....ielelvavadrdsllskdrkallasealtldlddliahldpdvvVEc.asseavaelvlkaLkagkdvvtank 91 
                    GlG++G++vl+++k++  e     + +lv+       ++ +r    +s  +t+dl ++++  d+d+v+E+ ++ + + e+++ a++++k+vvtank
     EGE27482.1  11 GLGTVGTGVLNLIKDNVNElarrSGHQLVITHAG---TRRHRHDIDPSINQTADLMSIAEAKDVDIVIEViGGTDIAYEVITHAIRHKKHVVTANK 103
                    9****************99997633333333332...34455556677777777777777668********************************* PP

                    CGGG-HHHHHHHTSSSTTS--.EE-G CS
  NAD_binding_3  92 galadealyeeLreaaeangakiyve 117
                    ++la  ++++e++ +ae++g+++++e
     EGE27482.1 104 ALLA--KHGNEIFRLAEEHGVQVRYE 127
                    ****..*****************997 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       1.5   3.4e+03      24      59 ..      36      75 ..      34      79 .. 0.63
   2 !   44.9   0.1   3.1e-15     7e-12       1      66 [.     352     418 ..     352     419 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
                TTSEEEEEEEEEESTT....ECEEEEEEEEEEHHHHHHHH CS
         ACT 24 rgiNidsieqrssedk....vagivfvvivvdeedleevl 59
                +++ i+++ +r+++      ++  ++++ +++++d++ v+
  EGE27482.1 36 HQLVITHAGTRRHRHDidpsINQTADLMSIAEAKDVDIVI 75
                6777777777777776666666666666666666665555 PP

  == domain 2  score: 44.9 bits;  conditional E-value: 3.1e-15
                 EEEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTT.ECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT   1 tvlrvgvpDrPGlLarvfgaladrgiNidsieqrssedk.vagivfvvivvdeedleevlealkkle 66 
                 ++lr+ v+D++G+La+ +++l+d+giNid i qr  + + +++ +++++ v e++  ++++++++l+
  EGE27482.1 352 YYLRLTVKDEVGVLADTTRILSDNGINIDAILQRDAHKSgLVPVIILTLPVLEKQMNAAIRQIEALG 418
                 79**************************************999999999999999999999999986 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.5   3.4e-06    0.0076      45     134 ..      39     131 ..      24     168 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.4e-06
                   EEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCC..........GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE- CS
  AP_endonuc_2  45 aslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGt..........agagpkgseeeawerlaeslneladyaekegvklalEt 131
                   +  ++ tr +  d        + s++++ + + +a+a ++++++  +G+          a ++ k    ++ ++la++ ne+ + ae++gv++ +E 
    EGE27482.1  39 VITHAGTRRHRHD-------IDPSINQTADLMSIAEAKDVDIVIEVIGGtdiayevithAIRHKKHVVTANKALLAKHGNEIFRLAEEHGVQVRYEA 128
                   3333333333322.......34558888899999999988888888888999999999877888888889999999999999999999999999997 PP

                   -TT CS
  AP_endonuc_2 132 lag 134
                      
    EGE27482.1 129 AVA 131
                   655 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.6   3.8e-07   0.00085       2     101 ..       8     103 ..       7     133 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.8e-07
                      EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHH.HHHHH..HTTSSEEEE-SSGG.GHHHHHHHHHH CS
  Sacchrp_dh_NADP   2 liiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyea.vLaal..lkegdlvvnlsppi.ssldvlkaCie 91 
                       ++G G vG +v+ l++++ +      +a rs ++l  +    +g+r + + +d++  +   L ++   k+ d+v+ +++ +  + +v+  +i+
       EGE27482.1   8 AVLGLGTVGTGVLNLIKDNVNE-----LARRSGHQLVITH---AGTRRHRHDIDPSINQTaDLMSIaeAKDVDIVIEVIGGTdIAYEVITHAIR 93 
                      69*****************998.....7888888843333...45555555555553332023333124555**********9999******** PP

                      HT-EEEESS- CS
  Sacchrp_dh_NADP  92 tgvhyvdtsi 101
                      ++ h+v++  
       EGE27482.1  94 HKKHVVTANK 103
                      ******9543 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   8.9e-06      0.02       9      48 ..     354     393 ..     352     422 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 8.9e-06
       ACT_4   9 leveaedrkglLaditqviseekanivsvnaktrkkdgla 48 
                 l+++++d+ g+Lad t+++s++++ni ++  ++ +k+gl+
  EGE27482.1 354 LRLTVKDEVGVLADTTRILSDNGINIDAILQRDAHKSGLV 393
                 7899************************988887775554 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.5   3.3e+03       3      23 ..       9      28 ..       7      47 .. 0.82
   2 ?   12.7   0.2   7.1e-05      0.16      79     125 ..      59     106 ..      41     110 .. 0.84
   3 ?   -2.1   0.0       2.7     6e+03      20      43 ..     189     211 ..     181     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
                     EESTTSHHHHHHHHHHHHCTT CS
  DXP_reductoisom  3 iLGsTGSIGtqtLdvieenpd 23
                     +LG  G +Gt  L++i++n +
       EGE27482.1  9 VLG-LGTVGTGVLNLIKDNVN 28
                     666.4999*****99998855 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.1e-05
                      HHHHHHHHCHTT-SEEEE--SSG.GGHHHHHHHHHTTSEEEE--SHHH CS
  DXP_reductoisom  79 eealkelaeeeeadvvvaaivGa.aGLkptlaaikagkriaLANKEsL 125
                      ++ l ++ae++++d+v+  i G+ +  +   +ai+++k+++ ANK  L
       EGE27482.1  59 TADLMSIAEAKDVDIVIEVIGGTdIAYEVITHAIRHKKHVVTANKALL 106
                      567899****************8457788889*************766 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.7
                      HCTTTEEEEEEEESSTHHHHHHHH CS
  DXP_reductoisom  20 enpdkfevvalaagsnvellaeqa 43 
                      + p +f+v+++ a ++++lla++a
       EGE27482.1 189 ADP-TFDVEGIDAAHKLSLLASIA 211
                      444.8999***9999999999876 PP

>> Peptidase_S66  LD-carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.7e-05     0.083      24      78 ..      28      83 ..      18     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.7e-05
                   HHH.HHCTEEEEEGCTC--TTTTCSS-HHHHHHHHHHHHC-TTECEEEES--SS-C CS
  Peptidase_S66 24 evl.eelglevvlgksaaksagylagtdeeRaadLnealadpeikaiicarGGyga 78
                   + l +++g+++v++++ ++++++      +  adL+ +++ ++++++i ++GG + 
     EGE27482.1 28 NELaRRSGHQLVITHAGTRRHRHDIDPSINQTADLMSIAEAKDVDIVIEVIGGTDI 83
                   4443778999999887777888888999999**********************864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3199.85
//
Query:       EGE27483.1  [L=267]
Description: protein-disulfide isomerase-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-22   78.7   0.0    6.9e-22   78.0   0.0    1.3  1  Thioredoxin_2  Thioredoxin-like domain
    2.7e-10   39.6   0.0    4.5e-10   38.8   0.0    1.3  1  DsbC_N         Disulfide bond isomerase protein N-terminus
    1.9e-05   24.5   0.1      0.011   15.5   0.0    2.4  2  DSBA           DSBA-like thioredoxin domain
    8.5e-05   22.8   0.2        0.2   11.8   0.1    2.6  3  Thioredoxin_4  Thioredoxin
     0.0065   16.7   0.0      0.022   15.0   0.0    1.9  2  Gp5_OB         Gp5 N-terminal OB domain
  ------ inclusion threshold ------
      0.067   12.9   0.0        3.7    7.2   0.0    2.8  3  Thioredoxin_5  Thioredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0   2.3e-25   6.9e-22       2     106 ..     143     260 ..     142     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 2.3e-25
  Thioredoxin_2   2 kgngkpvlvvftdpdCpyCkklkkelkel..ddvtvrvllfp.lkpsfepkavaiwcakekkkafkd...............ieenvelarkygvr 79 
                     +++k  ++vf+dp+C yC+ l+k++k+l   +++vr+l+ p  +++  p  +aiwc++++k a+++               ++e+ +l+r++gv+
     EGE27483.1 143 TSQHKASIYVFSDPTCHYCRMLHKDIKQLnaGGIEVRYLAWPrSEQD-IPLTEAIWCSQDRKAALTAaklgqtvhakhcknpVQEHLALGRSLGVS 237
                    6899*************************888999999999975555.7************9888889**************************** PP

  Thioredoxin_2  80 gtPtivfldgkeivarlpGyvpaeele 106
                    gtP+++   g+    ++ Gy+pa++l 
     EGE27483.1 238 GTPAVFAESGR----QIGGYMPAKDLI 260
                    ***********....********9985 PP

>> DsbC_N  Disulfide bond isomerase protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.5e-13   4.5e-10       2      51 ..      58     108 ..      57     110 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.5e-13
                 HHHHTTT..--S----B-SSTTEE--EE.TTEE-EEESSSS-EE-S----- CS
      DsbC_N   2 aaLekllpnlkvesvspspipGLyEVvi.ggqvlYtdadgkyliqGnlydl 51 
                  +L++++ +++v++  p+ +p++y+V   +++ ++td++g+yliqG+++ l
  EGE27483.1  58 DNLTQAGVDITVTNALPTTMPDIYWVSFeNAPAMFTDKSGEYLIQGQIVKL 108
                 699*************************999*****************987 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0018       5.5       2      33 ..     150     179 ..     149     184 .. 0.81
   2 !   15.5   0.0   3.6e-06     0.011     132     179 ..     203     250 ..     187     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0018
                 EEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEE CS
        DSBA   2 vdeffDvlCPyCylgkerleklaarspdvkvv 33 
                 + +f+D  C+yC +  +++++l a    ++v+
  EGE27483.1 150 IYVFSDPTCHYCRMLHKDIKQLNAGG--IEVR 179
                 679*************9999987533..6665 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 3.6e-06
                 HTTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEETTCEEE CS
        DSBA 132 kaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvvdgkrmv 179
                 ka l a++l + +  +  k+ v+e+ a+++slgv+G+P+v+++  r++
  EGE27483.1 203 KAALTAAKLGQTVHAKHCKNPVQEHLALGRSLGVSGTPAVFAESGRQI 250
                 78899999*********************************9544344 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.6   4.8e+03     110     139 ..      37      66 ..      24      70 .. 0.60
   2 !   11.8   0.1   6.7e-05       0.2      14      43 ..     147     176 ..     143     180 .. 0.86
   3 !    8.2   0.0   0.00083       2.5     104     160 ..     202     259 ..     179     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
                    HHHHTS-------HHHHHHHHHHHHHHT-- CS
  Thioredoxin_4 110 dekfeacleeekldalveaeskeakkagie 139
                     ++  +++++++  +lv++ + ++++ag+ 
     EGE27483.1  37 ASQPTTQTSSQSDTTLVKTLQDNLTQAGVD 66 
                    344444556666667777777777777776 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 6.7e-05
                    SEEEEEEE-TT-HHHHHHHHHHHHHHHHHH CS
  Thioredoxin_4  14 pvtvieyedlrCphCakfeeeveklleeyi 43 
                    + ++++++d +C +C+ +++++++l +  i
     EGE27483.1 147 KASIYVFSDPTCHYCRMLHKDIKQLNAGGI 176
                    67899*****************99977655 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00083
                    .....HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEE.TTEEE-TT--HHHH CS
  Thioredoxin_4 104 aealdkdekfeacleeekldalveaeskeakkagiestPtfii.ngekveepqtyeel 160
                    ++a+ + +k+ + +  +  ++ v++ ++  + +g+++tP ++   g+++ ++++ ++l
     EGE27483.1 202 RKAALTAAKLGQTVHAKHCKNPVQEHLALGRSLGVSGTPAVFAeSGRQIGGYMPAKDL 259
                    4478889999999*****************************9667778888777665 PP

>> Gp5_OB  Gp5 N-terminal OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.92   2.8e+03      50      77 ..      52      79 ..      35      99 .. 0.73
   2 !   15.0   0.0   7.5e-06     0.022      68     108 ..     140     179 ..     127     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.92
      Gp5_OB 50 vyGfflDkfkqdgvilGtlpgiykekpn 77
                 +   +D+++q gv + +  + ++++p+
  EGE27483.1 52 LVKTLQDNLTQAGVDITVTNALPTTMPD 79
                4555667777777777777777777766 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 7.5e-06
      Gp5_OB  68 lpgiykekpntskGFsDPngqyPryvgnDvnvLarggvdie 108
                 +p+ +++k+     FsDP+ +y r++ +D+  L+ gg+++ 
  EGE27483.1 140 YPATSQHKASI-YVFSDPTCHYCRMLHKDIKQLNAGGIEVR 179
                 66666666655.46***********************7765 PP

>> Thioredoxin_5  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.82   2.5e+03     131     144 ..     117     130 ..     105     135 .. 0.84
   2 ?    7.2   0.0    0.0012       3.7       1      22 [.     151     172 ..     151     180 .. 0.94
   3 ?    2.2   0.0     0.041   1.2e+02     119     162 ..     200     243 ..     186     253 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.82
  Thioredoxin_5 131 keDlesklakkafq 144
                     +D++s+lak+ + 
     EGE27483.1 117 TADIQSSLAKETLA 130
                    67999999999875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0012
  Thioredoxin_5   1 YlFidPlcseCweiEpelkklk 22 
                    Y+F dP c+ C  + + +k+l 
     EGE27483.1 151 YVFSDPTCHYCRMLHKDIKQLN 172
                    9******************996 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.041
  Thioredoxin_5 119 iaekaglDveefkeDlesklakkafqcDlklakemgvtevPtlv 162
                      +ka l   ++ + +++k+ k+  q+ l l + +gv+ +P+++
     EGE27483.1 200 QDRKAALTAAKLGQTVHAKHCKNPVQEHLALGRSLGVSGTPAVF 243
                    5567888889999999*************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       987  (0.0550505); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1921.10
//
Query:       EGE27484.1  [L=490]
Description: inosine-5'-monophosphate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.7e-158  527.1  10.8   1.9e-158  527.0  10.8    1.0  1  IMPDH          IMP dehydrogenase / GMP reductase domain
      5e-17   62.1   2.3    5.1e-10   39.7   0.2    2.8  2  CBS            CBS domain
    4.6e-10   39.4  17.9    9.3e-08   31.8   7.8    2.6  3  NMO            Nitronate monooxygenase
      3e-09   36.4  12.2    8.7e-08   31.6  11.7    2.6  2  FMN_dh         FMN-dependent dehydrogenase
    0.00019   20.7   0.7    0.00019   20.7   0.7    2.8  3  DHO_dh         Dihydroorotate dehydrogenase
    0.00024   20.6   5.5      0.028   13.9   0.1    3.2  3  His_biosynth   Histidine biosynthesis protein
     0.0037   16.5   1.1     0.0037   16.5   1.1    2.1  2  NanE           Putative N-acetylmannosamine-6-phosphate epime
     0.0042   16.7   0.0     0.0088   15.6   0.0    1.5  1  Peripla_BP_2   Periplasmic binding protein
     0.0044   16.2   5.2     0.0044   16.2   5.2    2.4  2  Glu_synthase   Conserved region in glutamate synthase
  ------ inclusion threshold ------
      0.065   13.7   1.2        0.5   10.8   0.3    2.5  2  NAD_binding_7  Putative NAD(P)-binding
        5.3    6.3  13.8      0.028   13.7   3.4    2.3  3  ThiG           Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  527.0  10.8  1.2e-161  1.9e-158       1     345 []       8     476 ..       8     476 .. 0.98

  Alignments for each domain:
  == domain 1  score: 527.0 bits;  conditional E-value: 1.2e-161
                 E--GGGEEEE---B-S-GGGSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
       IMPDH   1 gltfddvllvpaksevlpkevdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs................. 82 
                 +ltfddvll+pa+sevlpk+++l+t+ltk+i++n+P++saamdtvtes+mAia+a+ Gg+g+ihkn++i +qa++v++vk++                 
  EGE27484.1   8 ALTFDDVLLLPAYSEVLPKQTSLTTRLTKDITINLPIISAAMDTVTESKMAIAMAQLGGMGIIHKNMDIAHQARRVRHVKKFeagtvadpitvtadatv 106
                 69************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       IMPDH  83 ................................................................................................... 82 
                                                                                                                    
  EGE27484.1 107 gdllaltrehkisgvpvveagtnkvvgivthrdlrfetnlsqpvanvmtpkdklvtvkegetqerikellhrhriekvvvidddyqlkglitvndfska 205
                 *************************************************************************************************** PP

                 ...TTSXBXTTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-ST CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 ...pnaakdekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGs 178
                    pnaakd+kg+llvgaavg+ +d+++rv+al++a++dv++vd+ahghs++v++ v++ikk++++++vi+Gn+at ++a aL+++gadavkvGiGpGs
  EGE27484.1 206 ennPNAAKDSKGHLLVGAAVGTGADTQARVEALIDAQADVIIVDTAHGHSKGVIDRVAWIKKNYPNIQVIGGNIATGDAALALLDVGADAVKVGIGPGS 304
                 *************************************************************************************************** PP

                 TBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHH..HH-SS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx RF
       IMPDH 179 iCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgam..kkgskd 275
                 iCttr+vag+Gvpq++A+ +va+a k+  +p+iaDGGi++sgdi+kA+aaGa+++m+GsllagteE+pgev l++gr+yK+yrGmgslgam  ++gs+d
  EGE27484.1 305 ICTTRIVAGIGVPQISAIDSVASALKD-RIPLIADGGIRFSGDIAKAIAAGASCIMVGSLLAGTEEAPGEVELFQGRYYKAYRGMGSLGAMsgQNGSSD 402
                 **********************99876.5**************************************************************76668*** PP

                 TTS-..-....-SS-SBEEEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH-EEEEE-HHHHHHHS-- CS
                 xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 276 ryfqkke....klvpeGvegrvpykgsvkevveqlvgglrsgmgylGaktieelkekakfvritaaglkeshvH 345
                 ryfq+++    klvpeG+egrvpykg+v+ ++ ql+gglrs+mgy+G++tie+++++++fv++t+ag+keshvH
  EGE27484.1 403 RYFQDAKdgveKLVPEGIEGRVPYKGPVAGIIGQLAGGLRSSMGYTGCQTIEQMRKNTSFVKVTSAGMKESHVH 476
                 ****5223566**************************************************************9 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.2   3.1e-13   5.1e-10       8      52 ..      96     141 ..      86     143 .. 0.90
   2 !   21.2   0.2   1.7e-07   0.00028       1      51 [.     150     202 ..     150     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 3.1e-13
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTT..BEEEEEEHHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVVdedg..klvGivtlrDll 52 
                 d++tv+ d+t++++l l re+++s++PVV e g  k+vGivt rDl 
  EGE27484.1  96 DPITVTADATVGDLLALTREHKISGVPVV-EAGtnKVVGIVTHRDLR 141
                 89***************************.566559*********96 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 1.7e-07
                 HHHHSBS..SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHH CS
         CBS   1 Vgdimtr..dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDl 51 
                 V+ +mt+  ++vtv++ +t e + el+ ++++  + V+d+d +l G++t  D 
  EGE27484.1 150 VANVMTPkdKLVTVKEGETQERIKELLHRHRIEKVVVIDDDYQLKGLITVNDF 202
                 5678888889*****************8888999966676668******9996 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.4   1.3e-05     0.021       2      55 ..      32      84 ..      31     108 .. 0.79
   2 !   31.8   7.8   5.7e-11   9.3e-08      74     232 ..     205     371 ..     178     381 .. 0.80
   3 ?   -3.5   0.0       3.3   5.3e+03      35      55 ..     389     409 ..     387     420 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
         NMO  2 slltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeir 55
                ++lt+ ++i+ p++ + m  +++ ++a a ++ Gg+G++   +  a + a  +r
  EGE27484.1 32 TRLTKDITINLPIISAAMDTVTESKMAIAMAQLGGMGIIHKNMDIA-HQARRVR 84
                57889999******************************98444333.3333444 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 5.7e-11
         NMO  74 kdaadraekykkeleeaalelnieegvrfyrkvevvldekvevvsfgfglpteevv.......arlkeagvvliptissvkearkvearGaDalivqGp 165
                 ++ ++  + +k+  ++  +++++ +g   + +ve + d +++v+++  +    + v       ++    + v+ + i++ ++a ++   GaDa+ v G 
  EGE27484.1 205 AENNP--NAAKDSKGHLLVGAAVGTGADTQARVEALIDAQADVIIVDTAHGHSKGVidrvawiKKNYPNIQVIGGNIATGDAALALLDVGADAVKV-GI 300
                 22222..4677788888899999999999****************98887654433111111033344455566789****************866.77 PP

         NMO 166 eaGGhqGtpevgd..kglfaLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesd 232
                   G    t+ v++  + +++ +++v++a++  iP+iA GGi    ++a a+a+GAs + +g+ + +t+e++
  EGE27484.1 301 GPGSICTTRIVAGigVPQISAIDSVASALKdrIPLIADGGIRFSGDIAKAIAAGASCIMVGSLLAGTEEAP 371
                 778777777888777889999********99*************************************987 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.3
         NMO  35 GgLGvlasgyltaDrlakeir 55 
                 G LG +++  ++ Dr+ ++ +
  EGE27484.1 389 GSLGAMSGQNGSSDRYFQDAK 409
                 899999999999999988766 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6  11.7   5.3e-11   8.7e-08     202     302 ..     256     363 ..      53     374 .. 0.82
   2 ?    2.7   0.0     0.031        51     315     344 ..     430     459 ..     427     462 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 5.3e-11
                 C--HHHHHHHHHHHSSEEEEEE.E-SHHHHHHHHHTTESEEEE--GGG.....TSSTT.---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT CS
      FMN_dh 202 sltwddikwlreqtklplvvKG.vltaedakraveaGvdgivvSNHGG.....Rqldg.apatidvLpeiveavggrievlvDgGirrGsDvlkAlalG 293
                 +   d ++w++++ +   v+ G + t + a  ++++G+d++ v    G     R + g  ++ i+++ +++ a+++ri++++DgGir   D++kA+a G
  EGE27484.1 256 KGVIDRVAWIKKNYPNIQVIGGnIATGDAALALLDVGADAVKVGIGPGsicttRIVAGiGVPQISAIDSVASALKDRIPLIADGGIRFSGDIAKAIAAG 354
                 3467899****99986555555378888888889*********988887777777776247789999999***************************** PP

                 -SEEEESHH CS
      FMN_dh 294 AdavllGRp 302
                 A+++++G  
  EGE27484.1 355 ASCIMVGSL 363
                 ******965 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHHHHHHHHT-SBHHHHHCG CS
      FMN_dh 315 vervleilraelertmallGvksvaeldrs 344
                 v+ ++  l   l+++m  +G++++++++++
  EGE27484.1 430 VAGIIGQLAGGLRSSMGYTGCQTIEQMRKN 459
                 56678889999***************9875 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.1     0.026        43     243     275 ..     270     301 ..     258     316 .. 0.83
   2 !   20.7   0.7   1.2e-07   0.00019     231     276 ..     319     364 ..     313     371 .. 0.91
   3 ?   -3.8   0.0       3.5   5.7e+03     256     289 ..     449     482 ..     446     484 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.026
                 T.S-EEEESS--SHHHHHHHHHHTECEEEESHH CS
      DHO_dh 243 keipiIgvGGiesgeDalekieaGAslvqvyta 275
                 ++i++Ig G i +g+ al  +  GA +v+v+ +
  EGE27484.1 270 PNIQVIG-GNIATGDAALALLDVGADAVKVGIG 301
                 5799999.99******************99865 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.2e-07
                 HHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHH CS
      DHO_dh 231 lkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytal 276
                 +  i ++++ lk++ip+I+ GGi  + D    i aGAs + v++ l
  EGE27484.1 319 ISAIDSVASALKDRIPLIADGGIRFSGDIAKAIAAGASCIMVGSLL 364
                 567889999**********************************977 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3.5
                 HHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHH CS
      DHO_dh 256 geDalekieaGAslvqvytalvfegpkiakkikk 289
                 g   +e+++   s+v+v +a ++e  +  ++i k
  EGE27484.1 449 GCQTIEQMRKNTSFVKVTSAGMKESHVHDVQITK 482
                 5556777777777777777777777766666665 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.6    0.0032       5.3      61     116 ..     208     263 ..     196     277 .. 0.82
   2 ?    1.2   0.2      0.13   2.2e+02      74     102 ..     270     299 ..     258     302 .. 0.76
   3 !   13.9   0.1   1.7e-05     0.028      63     105 ..     320     364 ..     315     374 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0032
                   HHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHH CS
  His_biosynth  61 nldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaavknpelikela 116
                   n ++ +    ++ +   vG G  +  +ve+l++a ad +i+ ta  +++ +i+++a
    EGE27484.1 208 NPNAAKDSKGHLLVGAAVGTGADTQARVEALIDAQADVIIVDTAHGHSKGVIDRVA 263
                   55555666666667788***************************999999998876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
                   SEEEEESS.SSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  74 ipvqvGGG.Irsledveelleagadkviig 102
                    ++qv GG I + +++ +ll+ gad v +g
    EGE27484.1 270 PNIQVIGGnIATGDAALALLDVGADAVKVG 299
                   456666666****************99776 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.7e-05
                   HHHHHHHHH-S..SEEEEESSSSSHHHHHHHHHCT-SEEEESHHH CS
  His_biosynth  63 dlveeiaeevf..ipvqvGGGIrsledveelleagadkviigtaa 105
                   +++  +a++++  ip+  +GGIr   d+++++ aga+ +++g+  
    EGE27484.1 320 SAIDSVASALKdrIPLIADGGIRFSGDIAKAIAAGASCIMVGSLL 364
                   455555555555588889999999999999999999988888865 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       1.4   2.2e+03       2      20 ..      55      73 ..      43      87 .. 0.70
   2 !   16.5   1.1   2.3e-06    0.0037      56     178 ..     234     366 ..     227     372 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
                HHHHHHHHHHT-SEEEEES CS
        NanE  2 aamakaaeqaGavgirieg 20
                ++ma+a +q G +gi  + 
  EGE27484.1 55 SKMAIAMAQLGGMGIIHKN 73
                4677777777777765444 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.3e-06
                 HHHHHHTTT-SEEEEE--SS--T--HHHHHHHHHHH-...-EEEEE-SSHHHHHHHHHTT-SEEE-TT...TTSSTTS-...SS--HHHHHHH...HHT CS
        NanE  56 dideLaaagadiialDatdrerpvtieelikkikeky...qllmaDistleeglvakklGvdivGttl...sGytkeeek..aepDfalvkal...sea 143
                  +++L++a ad+i +D+++ + +  i+++ + ik++y   q++  +i+t + +l+  ++G+d v   +   s  t++       p ++ + ++   +++
  EGE27484.1 234 RVEALIDAQADVIIVDTAHGHSKGVIDRV-AWIKKNYpniQVIGGNIATGDAALALLDVGADAVKVGIgpgSICTTRIVAgiGVPQISAIDSVasaLKD 331
                 699*************9999888777764.67888888889999******************9866652222234443335666766666555111567 PP

                 T--EEEES---SHHHHHHHHTT--SEEEE-HHHH- CS
        NanE 144 glkviaeGrintPekakkaieiGvdavvvGsaitr 178
                  + +ia+G i      +kai  G+ +++vGs ++ 
  EGE27484.1 332 RIPLIADGGIRFSGDIAKAIAAGASCIMVGSLLAG 366
                 899****************************8865 PP

>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.4e-06    0.0088      27      69 ..     205     252 ..     186     262 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.4e-06
                   GG--GGGGGGT.......TS-BSBESSSB-HHHHHHH--SEEEE-GGG CS
  Peripla_BP_2  27 ttsdpldadklee.....aivevgadgeidvEklaalkPDlvilskgl 69 
                   + ++p++a++ +      a v +gad+++ vE+l++++ D++i+++ +
    EGE27484.1 205 AENNPNAAKDSKGhllvgAAVGTGADTQARVEALIDAQADVIIVDTAH 252
                   33444444443337888899*************************988 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       1.6   2.6e+03     219     238 ..     235     253 ..     220     257 .. 0.72
   2 !   16.2   5.2   2.7e-06    0.0044     220     304 ..     285     362 ..     271     365 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
                   HHHHHHHTT-SEEEEE-TT- CS
  Glu_synthase 219 iaagvakanadiilidGleG 238
                   ++a + +a+ad+i +d  +G
    EGE27484.1 235 VEA-LIDAQADVIIVDTAHG 253
                   334.7899999999998776 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.7e-06
                   HHHHHHTT-SEEEEE-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SH CS
  Glu_synthase 220 aagvakanadiilidGleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigt 304
                   a+ + + +ad++++ G+  G     + ++   G+P + a+  v        l+dr+ liadGg++ + d++ka+a GA  + +g+
    EGE27484.1 285 ALALLDVGADAVKV-GIGPGS-ICTTRIVAGIGVPQISAIDSVAS-----ALKDRIPLIADGGIRFSGDIAKAIAAGASCIMVGS 362
                   55556666666666.333332.34456777889999999988866.....5689************************9999886 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.47   7.6e+02      20      51 ..     169     200 ..     153     225 .. 0.67
   2 ?   10.8   0.3   0.00031       0.5      13      56 ..     225     270 ..     216     300 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.47
  NAD_binding_7  20 arkvrklleag..akvtvvapevkeeleelvkla 51 
                    +++++ ll      kv+v++ +  ++l++l++++
     EGE27484.1 169 QERIKELLHRHriEKVVVIDDD--YQLKGLITVN 200
                    5788888887666788998888..6778777764 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00031
  NAD_binding_7  13 vGgGevAarkvrklleagakvtvvapevkeele...elvklaeeele 56 
                    vG G   + +v+ l++a+a+v++v+ + +  ++   ++v +++++++
     EGE27484.1 225 VGTGADTQARVEALIDAQADVIIVDTA-HGHSKgviDRVAWIKKNYP 270
                    899**********************99.5555545566668877775 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       3.4   5.5e+03     189     197 ..      56      65 ..      37     102 .. 0.50
   2 ?   -0.9   0.2       0.5   8.2e+02     152     187 ..     222     255 ..     216     263 .. 0.66
   3 ?   13.7   3.4   1.7e-05     0.028     139     212 ..     287     369 ..     279     378 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.4
                 HHHHHH.HTT CS
        ThiG 189 daaqam.elG 197
                 + a am +lG
  EGE27484.1  56 KMAIAMaQLG 65 
                 2222221233 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.5
                 SSSTTS----S-HHHHHHHHHH-SS-BEEES---SH CS
        ThiG 152 aapiGsglGllnkealkiiieeakvPvivDAGigsp 187
                 +a++G+  G  +++ ++ +i+     +ivD   g++
  EGE27484.1 222 GAAVGT--GADTQARVEALIDAQADVIIVDTAHGHS 255
                 444544..5667777777777665557888776665 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 1.7e-05
                 HHHHTT-SEBE....E...BSSSTTS----S-HHHHHHHHHH-..SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTSSS CS
        ThiG 139 rleevGcaavm....P...laapiGsglGllnkealkiiieea..kvPvivDAGigspsdaaqamelGadavllntavaeakd 212
                 +l +vG+ av     P    ++ i +g G+ +  a+  + + +  ++P+i D Gi+ + d+a+a+  Ga+ +++ + +a +++
  EGE27484.1 287 ALLDVGADAVKvgigPgsiCTTRIVAGIGVPQISAIDSVASALkdRIPLIADGGIRFSGDIAKAIAAGASCIMVGSLLAGTEE 369
                 566666666642222211123568889999999******9998778*****************************99998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3561.45
//
Query:       EGE27485.1  [L=759]
Description: outer membrane protein CopB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-35  123.0  25.9      3e-35  123.0  25.9    1.9  2  TonB_dep_Rec  TonB dependent receptor
    6.9e-13   49.1   0.8    2.5e-12   47.3   0.8    2.0  1  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.4      0.06   5.3e+02     401     427 ..     180     202 ..      80     246 .. 0.60
   2 !  123.0  25.9   3.4e-39     3e-35      34     470 .]     308     758 ..     281     758 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.06
                   EEEECECCEEEE--EEEEEEEEEEEES CS
  TonB_dep_Rec 401 rygdaantfrrvpgYtlldlslgYklp 427
                   + g a +    + g++++d+ ++Y  +
    EGE27485.1 180 YHGSAFGK--AQTGFGQVDALVSY--N 202
                   11111122..33344444444444..1 PP

  == domain 2  score: 123.0 bits;  conditional E-value: 3.4e-39
                   EEE...........EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.........EEEEEEEE.... CS
  TonB_dep_Rec  34 lsr...........gylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgg.........grsynrdn.... 106
                   + +           +  ++ + + +++++et +k ++l ++ +   nl++ + ++  + Y   +g++++ + g++          +     dn    
    EGE27485.1 308 TPDgkkynvvdangKLVADLD-RNNPTQRETYQKLTNLEWTGK---NLGFANEVT-ANVYKLEHGRNSSSDKGNSYilrdvpntiN-----DNgdsp 394
                   222222222322222222222.333334444455555555444...444533333.233553333333333333334444442221.....113344 PP

                   ...CEEEEEEEEEEEEEEEEEEE..EE...EEEEEEEEEEEEEEEECCBEESCCTCCSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTCS CS
  TonB_dep_Rec 107 ...dyyglgnvlaaeldlngdlw..fG...snladgldyrklsddgydaydplnpsgdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvfg 195
                        +++g + +++ ++n++l+  fG   + l +g++yr +         p+ +++  + +++ +  g+y+++  ++ +++t+++G+R d++++++
    EGE27485.1 395 snmHVVATGANINFDKEFNHGLLkgFGvdhTLLKYGINYRHQ------EAVPPRGIRPGFQNQEKTDAGIYLEAVNQI-NDFTINTGVRVDRFDFKA 484
                   433444477777777777999876766666666666888833......334445553455555777777*********.*****************8 PP

                   SSS...EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEE.CCCCCEEEECSTT---EEEEEEEEEEEEEETTEEEEEEEEEEEE CS
  TonB_dep_Rec 196 kdlragafsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggs.ngaggalsngnpdLkPEtsknyelGlkldddrlnltlayFridi 291
                    d+         ++ +Ps+g++y+++++ls+ ++   + r P +++ + + +   + ++++  n   k+E+++n e+G++++++ +++  +yF++++
    EGE27485.1 485 MDGKKV----GKTDINPSFGVIYDVNPNLSVSGNLIYATRSPRFADAILSRGfRDGVVSIAD-N--AKAEKARNTEIGFNYNNGPYTAFGSYFWQRV 574
                   887555....34788***************************99999996543222222222.3..6*******************9999******* PP

                   EEEEEEESSSSCSTTTCS..EEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECECEEECTTTTSSTTEESEEEEEEEEE.ECSEEEEEE CS
  TonB_dep_Rec 292 knfittdpdgpslgglgd..fqyqNvgkarikGvElelsyrltpgWglglsgggytYydagddsdaddggnplpnvPkhtanlgltY.kfpaggWga 385
                   +n  +t ++++ ++  ++  ++  N g ++++G+El+++y+  + W+   ++g ++ ++       +  + ++   P++ ++ g t+  +       
    EGE27485.1 575 DNARATADAVQHPTVTTAkiTYLGNQGHQTNHGYELGVGYT-EGAWRA--RAG-VAHSKP------TMHNVKFKANPEYAVRTGRTWtAD------- 654
                   *************99999******************99777.333773..444.665444......233333666677777776665333....... PP

                   EE........SEEEEEEECCSSEEEEECE...CCEE.......EE--EEEEEEEEEEEES..SSEEEEEEEESTTETCSCEEESTT.TTTCCEB--S CS
  TonB_dep_Rec 386 gl........llagarYvavggrrygdaa...ntfr.......rvpgYtlldlslgYklp..knltlslgvnNLfdkryyassgyy.glggypgpgR 461
                    +        + +g+r++ v g+ ++d++   + f+          gY + d+++++k+   +++++++ vnN+f+k +y+  ++  ++++ pg+gR
    EGE27485.1 655 -VayrlpnpsVELGVRHTLVEGVDAKDTSilsGKFDdkdgailNREGYNVSDIYANWKPYgnDKVNVNFAVNNVFNK-NYRPHTQRaSIDTLPGAGR 749
                   .222223343336777755555555555544444445555666778***********66599999***********4.4444444466********* PP

                   EEEEEEEEE CS
  TonB_dep_Rec 462 tfrlglryk 470
                    fr+g++++
    EGE27485.1 750 DFRVGVNFT 758
                   *******96 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.8   2.8e-16   2.5e-12       7     108 .]      46     145 ..      40     145 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 2.8e-16
                 SEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHCTTSSTGS CS
        Plug   7 gsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasalyGsdai 105
                   ++vvt  + +++ at+l  +lq  p +    +gg+g++++isiRG+g n++ + +D++ + +  + +++  ++dp++++ ++v kG+  a  G +a+
  EGE27485.1  46 IKTNVVTLREKDESTATDLRGLLQDEPAIG--FGGGNGTSQFISIRGMGHNAIDLKIDNAYQDGQLHYHQGRFMLDPQMVKVVSVQKGAGFASAGIGAT 142
                 56789999999999****************..7****************************************************************** PP

                 SEE CS
        Plug 106 gGv 108
                 +G+
  EGE27485.1 143 NGA 145
                 *96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 5782.41
//
Query:       EGE27486.1  [L=189]
Description: sel1 repeat family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-19   67.8   8.9    2.6e-08   34.3   0.1    3.8  3  Sel1      Sel1 repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.1   1.4e-12   2.6e-08       2      36 ..      48      80 ..      48      81 .. 0.96
   2 !   33.9   0.2   1.9e-12   3.4e-08       1      38 []      83     118 ..      83     118 .. 0.94
   3 ?    3.0   0.7      0.01   1.8e+02      26      37 ..     138     149 ..     120     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.4e-12
        Sel1  2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeq 36
                +A++ L+    +++G gv kD +kA++wy +AAe+
  EGE27486.1 48 HAQFFLA--KRLQKGEGVTKDASKAVYWYTRAAEK 80
                69*****..************************97 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 1.9e-12
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a A+ +LG   +yl G gv +D+  ++ w+ekAA++Gd
  EGE27486.1  83 APAQLNLG--IMYLRGEGVRADIATGRAWLEKAANLGD 118
                 579*****..777***********************97 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.01
        Sel1  26 AiewyekAAeqG 37 
                 A++wy ++A+ G
  EGE27486.1 138 AYKWYDLSAREG 149
                 899999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1527.34
//
Query:       EGE27487.1  [L=36]
Description: hypothetical protein EA1_02452 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 267.68
//
Query:       EGE27488.1  [L=204]
Description: methionine biosynthesis protein MetW [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-73  244.6   0.0    6.6e-73  244.4   0.0    1.0  1  MetW             Methionine biosynthesis protein MetW
    2.1e-12   47.5   0.0    2.9e-12   47.1   0.0    1.2  1  Methyltransf_11  Methyltransferase domain
    1.4e-10   41.7   0.1    2.1e-10   41.1   0.1    1.3  1  Methyltransf_25  Methyltransferase domain
    2.4e-10   40.5   0.0    3.6e-10   39.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.3e-09   38.0   0.0    1.6e-09   37.8   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    2.1e-09   38.0   0.1    3.7e-09   37.2   0.1    1.3  1  Methyltransf_12  Methyltransferase domain
     0.0015   18.1   0.0      0.003   17.1   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0019   17.3   0.0     0.0028   16.8   0.0    1.1  1  DREV             DREV methyltransferase
     0.0036   17.2   0.0     0.0064   16.4   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
     0.0078   15.5   0.0      0.012   14.9   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.012   15.9   0.0      0.024   15.0   0.0    1.5  1  AdoMet_MTase     Predicted AdoMet-dependent methyltransferase
       0.02   14.3   0.1       0.06   12.7   0.1    1.6  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.071   12.5   0.1      0.091   12.1   0.1    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.077   13.0   0.0      0.097   12.7   0.0    1.2  1  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.4   0.0   5.2e-76   6.6e-73       1     193 []       2     201 ..       2     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 244.4 bits;  conditional E-value: 5.2e-76
        MetW   1 radfeliaelikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldell 99 
                 r d++l+ ++i+p+srvldlGcGdG+lle l+++ +v+g+Gle+de  +++++akGl++i+++l+++l+ f+d+sfd vv++++lqa++ p+++l ++l
  EGE27488.1   2 RIDHQLVEQWIEPNSRVLDLGCGDGTLLEHLQKHLGVTGYGLEIDEYKINQAIAKGLNIIEQNLNDGLARFADNSFDTVVMARALQAVKAPDQLLIDML 100
                 78************************************************************************************************* PP

        MetW 100 rigrraivsfPnfGhWrvrlsllskGrmPvtdalPyeWydtpnihlltikdfvelceelnlkvedrvaldekgrkvp.......avklvanllgelavf 191
                 r++++ iv+fPnf +W+ r++l +kG mP +d+lP eWy+tpnihl+t+kdf++lc++ n+++ d+va+++k + +        +vk ++nll+++av+
  EGE27488.1 101 RVAKEGIVTFPNFAYWQNRMYLGIKGMMPISDTLPHEWYNTPNIHLCTFKDFEQLCDKNNIRILDTVAISDKPNPKLppvllnhMVKRIPNLLADVAVY 199
                 *********************************************************************999876654667777888899999999999 PP

        MetW 192 ll 193
                  +
  EGE27488.1 200 HI 201
                 75 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   2.3e-15   2.9e-12       1      91 [.      19     106 ..      19     110 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 2.3e-15
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.T.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaek.l.pfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+GcG G l+e+l+k+   + +g++++++ +++a   + +    ++++++++ + l  f+dnsfD vv+  +l+ v+ p+++l  + Rv k g
       EGE27488.1  19 LDLGCGDGTLLEHLQKHLgVTGYGLEIDEYKINQA---IAKG---LNIIEQNLNDgLaRFADNSFDTVVMARALQAVKAPDQLLIDMLRVAKEG 106
                      8**************7777*************555...4443...66899999988668*******************************9986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.1   1.7e-13   2.1e-10       1      96 [.      18     106 ..      18     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.7e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG..BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed..lpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      vLdlGcG G+l+++l+k+lg  + +g++i+e  +++a ++       +++++++++d    f+d+sfD vv++ al+ ++ +d  ++l  + rv
       EGE27488.1  18 VLDLGCGDGTLLEHLQKHLG-VTGYGLEIDEYKINQAIAKG------LNIIEQNLNDglARFADNSFDTVVMARALQAVKAPD--QLLIDMLRV 102
                      9******************8.99**************9999......89999999887456***********999***99877..99*9****9 PP

                      EEEE CS
  Methyltransf_25  93 Lkpg 96 
                       k+g
       EGE27488.1 103 AKEG 106
                      9987 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   2.8e-13   3.6e-10      18     163 ..      10     164 ..       2     166 .. 0.72

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.8e-13
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlren.gfsvtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatll 109
                      ++ ++++rvLd+GcG+G+lle+l+++ g++ +g ++++ +++ a  k  + + ++ +   a++ +++fd++v+   l  v+ p  ll  + + +
       EGE27488.1  10 QWIEPNSRVLDLGCGDGTLLEHLQKHlGVTGYGLEIDEYKINQAIaKGLNIIEQNLNDGLARFADNSFDTVVMARALQAVKAPDQLLIDMLR-V 102
                      56899******************777699*******999888776666666667776778899999**************************.7 PP

  Methyltransf_23 110 kpgGylllseplaslkedrllldwlyl............vpagrhisffsarslkelleeaGlevv 163
                      + +G + +  ++ ++ ++r++l ++ +            ++ + h++ f   ++++l+ +++ +++
       EGE27488.1 103 AKEGIVTFPNFA-YW-QNRMYLGIKGMmpisdtlphewyNTPNIHLCTFK--DFEQLCDKNNIRIL 164
                      778888887773.33.2222333322212222222222233336666665..88888888887765 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.2e-12   1.6e-09       2     108 ..      13     109 ..      12     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.2e-12
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkil 94 
                      + + rvlDlGCG G+l+  l + lg   + +G++i+e  i++A +       + ++  +++ ++ l   ++d++fD ++   +l+a+++pd+ l
       EGE27488.1  13 EPNSRVLDLGCGDGTLLEHLQKHLG--VTGYGLEIDEYKINQAIA-------KGLNIIEQNLNDgLAR-FADNSFDTVVMARALQAVKAPDQLL 96 
                      6789*****************9876..6789*************9.......4667899999998887.99*********************** PP

  Methyltransf_31  95 eeiervlkpggill 108
                        + rv k +gi+ 
       EGE27488.1  97 IDMLRVAK-EGIVT 109
                      ******99.55555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   2.9e-12   3.7e-09       1      96 [.      19     106 ..      19     107 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.9e-12
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++GcG+G+ll++l ++  +++ +g++i++  i++a +k   ++       e + +d l ++  +sfD+vv++ +l+++k ++++l  + ++ k
       EGE27488.1  19 LDLGCGDGTLLEHLQKH-LGVTGYGLEIDEYKINQAIAKGLNII-------EQNLNDGLARFADNSFDTVVMARALQAVKAPDQLLIDMLRVAK 104
                      8*************999.899999*********44433333333.......33333333333345*********************99999988 PP

  Methyltransf_12  95 pg 96 
                       g
       EGE27488.1 105 EG 106
                      76 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.4e-06     0.003      31     126 ..      14     104 ..       5     109 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.4e-06
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivsNPPfhagkatelavaeeliaeAk 126
                  + +vlDlGcG G l  +l+k+    +   +++d + ++ a   +  ++l+ +e   +d+l+ +++++fd++v+   ++a ka  +++  ++++ Ak
  EGE27488.1  14 PNSRVLDLGCGDGTLLEHLQKHLGV-TGYGLEIDEYKINQA--IA--KGLNiIEQNLNDGLARFADNSFDTVVMARALQAVKA-PDQLLIDMLRVAK 104
                 5678***********8888775554.455566666665543..33..3444489999****************9777766666.5555556666665 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.2e-06    0.0028      95     177 ..      15     102 ..       3     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.2e-06
        DREV  95 dkklldlGaGdGeitkrvaptfee.vyatelsetmrdrlkkkkynvlsal..e.lqe.tdvkldlilclnlldrcfdplklledirsa 177
                 + ++ldlG GdG + +++++++    y  e+ e  +++   k+ n++ ++  + l+  +d  +d ++    l     p +ll d+  +
  EGE27488.1  15 NSRVLDLGCGDGTLLEHLQKHLGVtGYGLEIDEYKINQAIAKGLNIIEQNlnDgLARfADNSFDTVVMARALQAVKAPDQLLIDMLRV 102
                 679******************98636*********************8752246544368999*999999999999999999998764 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     5e-06    0.0064       7      89 ..       7      83 ..       4      84 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5e-06
  Methyltransf_18  7 aiaslvekgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeeevdtvvia 89
                      + +++e++srv+D G+  g l  +l k +   + +  +i e  +++a ++     l + ie  l+dGl+ + ++++dtvv+a
       EGE27488.1  7 LVEQWIEPNSRVLDLGCGDGTLLEHLQK-HLGVTGYGLEIDEYKINQAIAKG----L-NIIEQNLNDGLARFADNSFDTVVMA 83
                     68899*****************988865.5556899*******999997654....3.469************999*****98 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.2e-06     0.012      51     140 ..       3      89 ..       1      97 [. 0.68

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.2e-06
                 HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---.--SEEEEES-GGGT CS
        CMAS  51 ldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde.kvdrvvsvgafehv 140
                 +d+ l    ++p +++Ld+GcG G+l+ +  ++ +v   gl +  +++k  ++  + l+    ++ +  +   +++  +d vv   a+++v
  EGE27488.1   3 IDHQLVEQWIEPNSRVLDLGCGDGTLLEHLQKHLGVTGYGLEI--DEYKINQAIAKGLN--IIEQNLNDGLARFADnSFDTVVMARALQAV 89 
                 67777777899*****************999997776666655..55666555544444..333444445555554467777776666665 PP

>> AdoMet_MTase  Predicted AdoMet-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.9e-05     0.024      60      93 ..      16      50 ..       2      60 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
  AdoMet_MTase 60 tsfvdvgcgng.llvyvlaaegykgygidlrkrkl 93
                      d+gcg+g ll ++ +  g  gyg+++   k+
    EGE27488.1 16 SRVLDLGCGDGtLLEHLQKHLGVTGYGLEIDEYKI 50
                  4578******94455777889*******9988776 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   4.7e-05      0.06      48     146 ..      15     106 ..       5     110 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-05
                      TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHH CS
  Ubie_methyltran  48 gakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayr 141
                       ++vlD+ +G g l  +l++++g +g   +l+i+e  ++++ +    +g   ie    ++    f d+sfD+v ++  l+ v   ++ L ++ r
       EGE27488.1  15 NSRVLDLGCGDGTLLEHLQKHLGVTG--YGLEIDEYKINQAIA----KGLNIIEQNLNDGL-ARFADNSFDTVVMARALQAVKAPDQLLIDMLR 101
                      5689******9999888888888877..355555554443333....34444554444444.47****************************** PP

                      HEEEE CS
  Ubie_methyltran 142 vlkpG 146
                      v k G
       EGE27488.1 102 VAKEG 106
                      **988 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.1e-05     0.091     153     231 ..       6      81 ..       4     106 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.1e-05
        PrmA 153 ealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellkeekadviv 231
                 +++e+ ++++++vlD+G+G G L    +k    + +++ iDe  ++ a +   lN +e++l+    ++  + +++d +v
  EGE27488.1   6 QLVEQWIEPNSRVLDLGCGDGTLLEHLQKHLGVTGYGLEIDEYKINQAIA-KGLNIIEQNLND-GLARFAD-NSFDTVV 81 
                 578999***************87665555444567999999999988875.356777766632.2222323.5566554 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.6e-05     0.097      24      73 ..      13      59 ..       3     124 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.6e-05
  Methyltransf_32 24 sgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraek 73
                     +++ +v+D+G+G g L   l+    ++++  +g+++ e  +++a +   +
       EGE27488.1 13 EPNSRVLDLGCGDGTLLEHLQK---HLGVTGYGLEIDEYKINQAIAKGLN 59
                     44689*****************...8899999999999888887665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1526.26
//
Query:       EGE27489.1  [L=389]
Description: homoserine O-acetyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-37  128.3   0.1    4.8e-37  128.0   0.1    1.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    7.1e-05   23.5   0.0    0.00016   22.4   0.0    1.6  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00053   19.7   0.0    0.00086   19.0   0.0    1.3  1  Esterase       Putative esterase
     0.0019   17.5   0.0     0.0032   16.8   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.1   1.1e-40   4.8e-37       1     255 [.      57     373 ..      57     375 .. 0.92

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 1.1e-40
                    SEEEEE-STTTCGGG............GTTGHHHHHHHHT..TSEEEEEEETTSTTSSSTTTGB.........CHHSHHHHHHHHH.HH..HHHCT CS
  Abhydrolase_1   1 pvlvilhGlpgssdv............waerglapaLakd..gfdvillDlrGvgySspapacin........ddygtasvaddld.ri..ldalg 71 
                    ++++i+h+l gs++             w+ ++++++ a d  +f+v++l+  G++++s++p++in         d++++++ d+++ ++   d+l 
     EGE27489.1  57 NAILICHALSGSHHAagyhsaddtkagWWDNLIGNGKAIDtsKFFVVCLNNIGSCHGSTGPTTINpktgkiygADFPLITIKDWVKtQVmlSDRLE 152
                    68*********999999999999***************99**********************************************94455***** PP

                    TSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESE....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHH.HHHHHHHHCCSCHHHHHHHHHHHH CS
  Abhydrolase_1  72 ddklt.lvGhSmGGmialayaaeyperVkalvllga....idpaaslieaqrqqaksfpdffdgyaadcar.npagplladelaaleqrhrlvdal 161
                    ++k++ +vG+SmGGm+al++  +yp+r +++v +++    ++ +++++e +rq++ s+p+f dg++ +    ++ g++la++++++++ ++   + 
     EGE27489.1 153 IKKWHaIVGGSMGGMQALQWSVDYPDRLSRCVIIAStpklSAQNIAFNEVARQSILSDPEFHDGWYLEHGTyPRRGLILARMVGHITYITEDAMKA 248
                    ****************************************************************99877662678**************9955555 PP

                    HH.......................HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC...THHHHSEEEEEEETTCSSSCH.HHH CS
  Abhydrolase_1 162 kf.......................pdkskrfpssgsdnasslatgalksieqwpttdsaklllrlre...lknvlaptlvisgtsDplvpp.kal 230
                    kf                       + +  rf +++ +n   l t+al ++++  +++ + l +++     l+   +  lvis t+D+ ++p ++ 
     EGE27489.1 249 KFgrdlksgrfmygydvefqvesylRYQGERFSQNFDANTYLLMTKALDYFDPTRDYAPDGLSDEDALkltLSRTRCQFLVISFTTDWRFSPeRSV 344
                    55*********************987777888888888999999999999999999999999999888999999999***************7777 PP

                    HHHHHCHTS....EEEEEEETCSSSHHHH CS
  Abhydrolase_1 231 edlaqllpk....krlvvisdagHlafle 255
                    e  ++l  +    +++ v+++ gH++fl+
     EGE27489.1 345 ELVDALMANtkpvSFVNVDAPHGHDSFLF 373
                    7777774444566*************997 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   3.6e-08   0.00016       5     208 ..      70     371 ..      59     381 .. 0.43

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3.6e-08
                    --GC..........GCHHHH..HHHHCCT....CEEEEE--TTS..TS-GGCS--HHH......CHHH..HHHHCCTT.......TTSE....EEE CS
  Abhydrolase_6   5 HGagss.....assWlvapL..aallaag....vhvlapDlpGh..Grsdpppldled......ladl..aalldelaa.....gggpv....vlv 70 
                    H+ag++     + +W +++L     + a     + v+++   G   G  ++ p++ ++       ad+    + d +++     ++ ++     +v
     EGE27489.1  70 HAAGYHsaddtKAGW-WDNLigN--GKAIdtskFFVVCLNNIGSchG--STGPTTINPktgkiyGADFplITIKDWVKTqvmlsDRLEIkkwhAIV 160
                    334444555555555.4466442..2222345677788888877778..5555555444444331333333333333333334433334556788* PP

                    EETCHHHHHHH.HHHCC....EE.EEES-......----TTTS----TTHHHHHHTT-C..CCCH.....CCHS-HSCCCCHHH..........CC CS
  Abhydrolase_6  71 GHSlGGalala.aapla..lvvg.vlldppp....talpagllaaalelllallallrl..lawl.....sreplprlfladed..........ad 141
                    G S+GG+ al+  ++++  l  + v+++++p             a+ e++++ + + +   ++w         p++ l+la +           ++
     EGE27489.1 161 GGSMGGMQALQwSVDYPdrLS-RcVIIASTPklsaQ------NIAFNEVARQSILSDPEfhDGWYlehgtY--PRRGLILARMVghityitedaMK 247
                    ***********4444448544.35999994433330......33333333333332222333333222110..11112222111111111000011 PP

                    CCHCHCCCGHH.............................................HHCCHHC...HTTCCHHTT-TTGCEEE.CTT-C.....HH CS
  Abhydrolase_6 142 aawrarlarla.............................................allaglg...llpaaawadlpvpllvl.ggeDp.....lv 183
                    a +++ l  ++                                             ++++            + ++++++lv+  ++D        
     EGE27489.1 248 AKFGRDLKSGRfmygydvefqvesylryqgerfsqnfdantyllmtkaldyfdptrDYAPDGLsdeDALKLTLSRTRCQFLVIsFTTDWrfspeRS 343
                    111111111112222223333333333333333333333333333333311111114444222121223446666666668884488887655544 PP

                    HHCHHCCCH..STTEEETCE...SSS..- CS
  Abhydrolase_6 184 prllerlla..qagarlpvvlpgaGH..l 208
                     +l+++l+a  +++  +  v +  GH  +
     EGE27489.1 344 VELVDALMAntKPVSFV-NVDAPHGHdsF 371
                    47788888866555555.55666777533 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.9e-07   0.00086     108     147 ..     149     187 ..     131     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.9e-07
                 HHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES CS
    Esterase 108 anfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfS 147
                 ++++++++ +a++G SmGG+ AL   +++pdr +++   +
  EGE27489.1 149 DRLEIKKW-HAIVGGSMGGMQALQWSVDYPDRLSRCVIIA 187
                 34444455.***********************99998777 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.1e-07    0.0032      77     117 ..     156     196 ..     136     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.1e-07
  Hydrolase_4  77 plfllGhSmGGliallyllrypdkvaglilsaPalkikakl 117
                   + ++G SmGG+ al++  +ypd++++ +++a+  k+ a+ 
   EGE27489.1 156 WHAIVGGSMGGMQALQWSVDYPDRLSRCVIIASTPKLSAQN 196
                  57899*********************999888877766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2856.30
//
Query:       EGE27490.1  [L=165]
Description: FKBP-type peptidyl-prolyl cis-trans isomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-14   52.9   0.0    4.7e-14   52.5   0.0    1.3  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.064   13.4   0.0    1.7  1  Fn3-like  Fibronectin type III-like domain


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   5.3e-18   4.7e-14       4      74 ..      12     104 ..       9     150 .. 0.74

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 5.3e-18
                 BB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTT......................T CS
      FKBP_C   4 eakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYge......................k 74 
                 +++ ++tV++h++  l +g+v+ds+++r++p+++++G++ ++ Gfe+ l ++k+G++rt t   + a+g+                       
  EGE27490.1  12 RITHKSTVSLHFEVSLMNGEVIDSTFHRQEPVTLTIGDESLLAGFEKVLINLKAGDTRTATLSADDAFGQwnpenvqtftrtqfalsepnpvV 104
                 478899****************************************************************66655555555555554444440 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.2e-06     0.064      21      52 ..      53      85 ..      40      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.2e-06
                EEEEEEEE..E-TT-EEEEEEEEECGGG-EEETT CS
    Fn3-like 21 LkgFekve..LapGesktvtftldrkdlsvwdee 52
                L+gFekv   L++G+++t+t++ d +++  w++e
  EGE27490.1 53 LAGFEKVLinLKAGDTRTATLSAD-DAFGQWNPE 85
                9******76699999999999877.477777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1252.77
//
Query:       EGE27491.1  [L=31]
Description: hypothetical protein EA1_02472 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       175  (0.00976072); expected 358.6 (0.02)
Passed bias filter:                      115  (0.00641419); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 256.01
//
Query:       EGE27492.1  [L=170]
Description: lipoprotein signal peptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-39  134.6  10.5    3.2e-39  134.4  10.5    1.0  1  Peptidase_A8     Signal peptidase (SPase) II
     0.0088   16.3   0.0      0.015   15.6   0.0    1.3  1  Peptidase_U32_C  Peptidase family U32 C-terminal domain
  ------ inclusion threshold ------
       0.72   10.2   4.0       0.27   11.5   0.6    2.0  2  MscL             Large-conductance mechanosensitive channel, 
          1    9.6   0.1          1    9.6   0.1    3.4  4  ATPase_gene1     Putative F0F1-ATPase subunit Ca2+/Mg2+ trans


Domain annotation for each model (and alignments):
>> Peptidase_A8  Signal peptidase (SPase) II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4  10.5   7.1e-43   3.2e-39       1     141 []      18     162 ..      18     162 .. 0.94

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 7.1e-43
  Peptidase_A8   1 lallllllDqltKllvvenlkte.svevipgffkltyveNrgaafglle..sgakrkllillslvvilllivlllkkkkkskllrialalilgGalG 94 
                   +a+++l+ Dq+tK++ +++++   svevi+ ++++t+ +N+gaaf++l+  +g++++++++l l+v +++i++l k  k++++l+++l+l+lgGa+G
    EGE27492.1  18 IAIVVLVSDQMTKFYFKNTFQLGeSVEVISPILNWTLAHNYGAAFSFLAdqNGWQKWFFAILGLIVSGFIIIYLKKAPKTANILNLGLSLVLGGAIG 114
                   689*************99998878999********************999999999********99999999999888889**************** PP

  Peptidase_A8  95 NliDrllygkVvDfldfsl.eliefpvFNvADvaitvGvilliiallf 141
                   N+iDr+l+++VvDf+++++   +++p+FN+AD+ i+vG++++i+++lf
    EGE27492.1 115 NVIDRILHNHVVDFIHVHYaDVWHYPIFNIADIGICVGMAMIIYDMLF 162
                   ****************977567788********************997 PP

>> Peptidase_U32_C  Peptidase family U32 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.3e-06     0.015       5      42 ..      17      52 ..      14      58 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.3e-06
  Peptidase_U32_C  5 fvGevlsydeeglaeveqRNkfsvGdelEvltPkgenv 42
                      +++v  + + ++ ++  +N f+ G+++Ev++P   n+
       EGE27492.1 17 LIAIVVLVSD-QMTKFYFKNTFQLGESVEVISPI-LNW 52
                     6788885554.49********************3.355 PP

>> MscL  Large-conductance mechanosensitive channel, MscL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       0.3   1.3e+03      39      47 ..      46      54 ..      12      97 .. 0.56
   2 ?   11.5   0.6   6.1e-05      0.27      12      48 ..      98     134 ..      90     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.3
        MscL 39 impliglll 47
                i+p++++ l
  EGE27492.1 46 ISPILNWTL 54
                444444444 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.1e-05
        MscL  12 GnvidLAvgviiGaaftkiVtslvkdiimpliglllg 48 
                  n+++L   +++G+a++++++ + ++ + ++i +   
  EGE27492.1  98 ANILNLGLSLVLGGAIGNVIDRILHNHVVDFIHVHYA 134
                 79*********************99999999987664 PP

>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.5      0.91   4.1e+03       7      17 ..      13      23 ..      12      24 .. 0.73
   2 ?    1.7   1.7     0.067     3e+02      36      52 ..      73      89 ..      59      91 .. 0.74
   3 ?    9.6   0.1   0.00023         1      10      31 ..     102     123 ..     100     129 .. 0.88
   4 ?   -1.1   0.1       0.5   2.2e+03      43      49 ..     148     154 ..     138     160 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.91
  ATPase_gene1  7 iGielvapill 17
                  +G++l+a+++l
    EGE27492.1 13 MGYYLIAIVVL 23
                  68888888775 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.067
  ATPase_gene1 36 liiglllGlaaGfynvy 52
                    ++ +lGl+++++ ++
    EGE27492.1 73 KWFFAILGLIVSGFIII 89
                  46788999888877665 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00023
  ATPase_gene1  10 elvapillggllGywLDkkfgt 31 
                   +l+++ +lgg++G+ +D+ +++
    EGE27492.1 102 NLGLSLVLGGAIGNVIDRILHN 123
                   78999*************9885 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.5
  ATPase_gene1  43 GlaaGfy 49 
                   G+++G+ 
    EGE27492.1 148 GICVGMA 154
                   4444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1241.84
//
Query:       EGE27493.1  [L=1095]
Description: isoleucyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.8e-204  679.4   0.9   1.8e-118  396.5   0.1    2.2  2  tRNA-synt_1     tRNA synthetases class I (I, L, M and V)
    1.1e-27   96.9   1.0    1.4e-27   96.5   0.2    1.7  2  Anticodon_1     Anticodon-binding domain of tRNA
    4.4e-21   75.1   0.4    9.8e-14   50.9   0.0    3.8  4  tRNA-synt_1g    tRNA synthetases class I (M)
    4.7e-15   56.5   0.0    1.1e-14   55.2   0.0    1.7  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    1.2e-07   31.4   0.1    2.8e-07   30.2   0.1    1.6  1  tRNA-synt_1_2   Leucyl-tRNA synthetase, Domain 2
    2.4e-06   27.3   6.0    2.4e-06   27.3   6.0    2.4  2  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
    6.3e-05   22.5   0.0       0.24   10.7   0.0    2.5  2  tRNA-synt_1e    tRNA synthetases class I (C) catalytic domain
    0.00087   19.5   0.0     0.0027   17.9   0.0    1.8  2  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.5   0.1   4.8e-87   1.1e-83       2     232 ..      32     269 ..      31     302 .. 0.93
   2 !  396.5   0.1  7.8e-122  1.8e-118     229     601 ..     440     814 ..     428     815 .. 0.96

  Alignments for each domain:
  == domain 1  score: 281.5 bits;  conditional E-value: 4.8e-87
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  ++e+We++dv+ + +++++ +k++il+dgPPy++G++H+Gh+++k+lkdi+i+yk+++G++++yvpGwD++Gl+ie+kve+k+g+ ++    k+ +++
   EGE27493.1  32 WLEQWEKDDVYGQIRQARQGRKTYILHDGPPYANGQIHLGHVVNKVLKDIIIKYKTLDGYDAPYVPGWDCHGLPIEQKVEQKIGKVGQ----KVNATK 125
                  799********************************************************************************99986....99**** PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafpladk 197
                  fre +re+++ +++ +  ++krlGv  D+d++ylT++ + e+++++++++++d+g+i rg k+vnw+ ++ +al+e+Evey+dk++ +i+v f++ + 
   EGE27493.1 126 FREACREYAKSQVQLQMADFKRLGVLGDWDNPYLTMNYQQEANIVRALGKIYDNGHIVRGMKPVNWCLDCGSALAEAEVEYQDKTSDAIYVGFDIVNR 223
                  ***********************************************************************************************888 PP

  tRNA-synt_1 198 ee..........vklviaTTtPeTllgdtavavnpeldyv.itkek 232
                  e+           + vi+TTtP+Tl++++a++v+ ++dy+ i+++k
   EGE27493.1 224 ENlpiianisgtLQAVIWTTTPWTLPANQAISVHGDFDYAvIKGKK 269
                  8788888888889**************************9644443 PP

  == domain 2  score: 396.5 bits;  conditional E-value: 7.8e-122
  tRNA-synt_1 229 tkeklilaeallkslvkke.sek.kiledergkeLegkevelpl.vnrkipiiaddyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtl 323
                  +  ++i+a++l+  + k+   ++ k   +++g++L+ +++++pl  +r++pii++++v++++GtG+V++aPah+ dDy vg+kynl+v n++ + g++
   EGE27493.1 440 HTAHFIVANDLVADFSKNVaLDDvKTITTIKGADLTVLNAQHPLiSERQVPIITGEHVTADSGTGLVHTAPAHGVDDYIVGNKYNLPVENPVSDAGVY 537
                  56789************99755569999***************9789*************************************************** PP

  tRNA-synt_1 324 teeaaefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpiiyrateqWfvrvke..ladaalkavekvqfvpkskekryaswleniqdW 419
                   ++a+ f g ++ +a+ k++e+l   g ll ++ki+hs+p+c+r+k+pii+rat+qWf+++++  l+++al+ +++++++p ++++r++ ++  ++dW
   EGE27493.1 538 LDNAKVFVGEHIYKAQPKIIETLGSSGHLLDHKKIRHSYPHCWRHKTPIIFRATPQWFISMEQngLRQKALNDIKNITWTPAWGQNRIEAMIDGRPDW 635
                  **************************************************************999********************************* PP

  tRNA-synt_1 420 ciSRqrwWGhriplfvsketeevvvre.elkelvagreeeeaekkalekeakdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffp 516
                  ciSRqr+WG++i +f++ket++++ r+ el e +a++ e+ + +++++ ++ d l +e ge+ k++d+lDvWF+Sg + f++l+    +++el+   p
   EGE27493.1 636 CISRQRTWGVPITFFIHKETDQLHPRTsELIEKAAQIIEKGGIEAWFDADISDFLSDESGEYYKVTDTLDVWFDSGATNFAVLN----HRKELS--NP 727
                  *************************99899******************************************************....588999..9* PP

  tRNA-synt_1 517 admlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNv..idpldvikkygadalRltlilsdvgrdinl 601
                  ad++leG+D++rgW+++++l+s  + g+ P+k+vl+hg+++d++G+K+SKs+gN+   +p+d+++k+g+d+lRl++ +sd+  ++++
   EGE27493.1 728 ADLYLEGSDQHRGWFQSSLLVSESIYGRPPYKQVLTHGFTVDAKGHKLSKSKGNTkgFEPSDIANKMGVDILRLWVGSSDYRYEMAV 814
                  ******************************************************83359*********************9988776 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.6     1e+04       6      31 ..     108     133 ..     106     135 .. 0.83
   2 !   96.5   0.2   6.3e-31   1.4e-27       1     152 []     859    1013 ..     859    1013 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.6
  Anticodon_1   6 selnklvkevteayeeyrfnkaasal 31 
                  +++++ + +v ++ +  +f++a++++
   EGE27493.1 108 QKVEQKIGKVGQKVNATKFREACREY 133
                  678888999999999999**999875 PP

  == domain 2  score: 96.5 bits;  conditional E-value: 6.3e-31
  Anticodon_1    1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.ra.aqevllevletllrllaPfmPfitEelwqreee 94  
                   d++il ++ ++ +e+ +ay++++f+++++ ++ f+++dl  +yl+++k+r y+ +a+   r+ aq++l++++++llr++aP++ f+++e+wq    
   EGE27493.1  859 DKYILYRTKHIQQEIIQAYHSMDFHQVCQTVMGFCSQDLGGFYLDIIKDRTYTTKADGLpRRsAQTTLYHIAHALLRWIAPVLSFTAQEAWQ---- 950 
                   89***************************************************998777*888****************************5.... PP

  Anticodon_1   95 el.gkkesimlaewpekaeel..ekele..eeevellk.eivkairklrselkikpsselkvvi 152 
                    l + +  i+ aew + ++++  +  +e  + +v+l+k  ++k i+++rs++ ++ + ++kv i
   EGE27493.1  951 VLkDTQGYIFTAEWYQLPDFQmnDISHEdwD-KVALIKdTVNKSIEQARSDKIVSSNLTAKVTI 1013
                   44356799*****987444444544442444.55555405699****************99976 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   4.4e-17   9.8e-14       8     136 ..      62     205 ..      56     211 .. 0.76
   2 !   11.2   0.1   5.1e-05      0.12     155     238 ..     563     648 ..     550     659 .. 0.81
   3 ?   -2.0   0.0      0.52   1.2e+03     100     133 ..     662     693 ..     648     696 .. 0.73
   4 !    8.2   0.0   0.00039      0.88     312     354 ..     758     803 ..     738     824 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 4.4e-17
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHT......TS-H.......HHHHHHHHHHHHHHHHHTT-..--SEEE CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAeke......gvtp.......eelvekvheeikelfkklni..sfdkyg 89 
                   pYang++HlGh+++ +  Di+++yk l g++  +v g D hG pie+k e++      +v++       +e++++  + + ++fk+l++   +d+ +
    EGE27493.1  62 PYANGQIHLGHVVNKVLKDIIIKYKTLDGYDAPYVPGWDCHGLPIEQKVEQKigkvgqKVNAtkfreacREYAKSQVQLQMADFKRLGVlgDWDNPY 158
                   9*********************************************998875322222333311111113333344455667899999944466766 PP

                   ETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-E CS
  tRNA-synt_1g  90 rttseehkelvqeifkklkekgliyekeieqlycpkderflpdryve 136
                    t + +++    + + k++++g+i ++   + +c ++++ l++ +ve
    EGE27493.1 159 LTMNYQQEANIVRALGKIYDNGHIVRGMKPVNWCLDCGSALAEAEVE 205
                   666665555555566899*************************9987 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5.1e-05
                   TSSB-E..................EEE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 155 cgkkleptelin..pksaisgskpevketehlffklskfekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvP 238
                   +g+ l+ +++    p++   ++  +++ t ++f ++++   + k+  + ++ +++    +   e + +g  d++isr+  wG+p+ 
    EGE27493.1 563 SGHLLDHKKIRHsyPHCWRHKTPIIFRATPQWFISMEQNGLRQKALNDIKNITWTPAWGQNRIEAMIDGRPDWCISRQRTWGVPIT 648
                   6777777777653378888888889***********998888888887788889999888888888889***************97 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.52
                   HHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GG CS
  tRNA-synt_1g 100 vqeifkklkekgliyekeieqlycpkderflpdr 133
                   ++e+++k      i+++ ie +++ + + fl+d+
    EGE27493.1 662 TSELIEKA--AQIIEKGGIEAWFDADISDFLSDE 693
                   44555543..4589999**************997 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.00039
                   -S-EEEE--.EEE-----------..---HHHHHHHH-HHHHHHHH CS
  tRNA-synt_1g 312 pkkvvahey.ltvegkKlSkSrgv..vvkakealerldadllRYyl 354
                    k+v +h++ +  +g+KlSkS+g+  +  ++++++++ +d+lR ++
    EGE27493.1 758 YKQVLTHGFtVDAKGHKLSKSKGNtkGFEPSDIANKMGVDILRLWV 803
                   579999**955799********98335899*************876 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   5.1e-18   1.1e-14       2     137 ..     284     414 ..     283     415 .. 0.83

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 5.1e-18
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmrylpepltleea.eewlerawaeeseeegygwaivlkdtg.viGsvglrdleeedeeaelgymla.psfwg 93 
                     ++Lr lt++D +al + +sdp++++++p+ + l e  e ++e+a     +++   +ai++k tg +iG+ ++ + + +d+++ +g+++  p+fwg
      EGE27493.1 284 FTLRTLTKADKQALQACASDPAIWQFMPTKRHLPEVfEPFFEQAV----KDK--AYAIIDKRTGnIIGTTRFCHDNAKDDTIGIGFTFItPEFWG 372
                     58************99*********98775544444244444333....234..489989777736****99999998888****9988577*** PP

  Acetyltransf_3  94 kGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     kG+  e  + ll++af+    + +   i++ N +S +  +klG 
      EGE27493.1 373 KGVNDEIKHTLLNHAFKYR--NAVHFQIHEGNDRSKKAVKKLGA 414
                     ***************9877..899*******************7 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   1.2e-10   2.8e-07      57     144 ..     450     535 ..     416     564 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.2e-10
  tRNA-synt_1_2  57 elaafieevkkksesereletkekeGv.ftglkaihPit.gekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikped 144
                     +a+f ++v+ ++ ++     ++ +G   t l+a hP+  ++++pi + ++v ++ gtg v + Pah   D+   +kynlp+++ ++ ++
     EGE27493.1 450 LVADFSKNVALDDVKT----ITTIKGAdLTVLNAQHPLIsERQVPIITGEHVTADSGTGLVHTAPAHGVDDYIVGNKYNLPVENPVSDAG 535
                    4555555555544443....344677757999*****876999***************************************99877554 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.26   5.8e+02       5      13 ..     577     585 ..     577     591 .. 0.78
   2 !   27.3   6.0   1.1e-09   2.4e-06       3      29 ..    1058    1084 ..    1056    1085 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.26
                   TTT--BBEE CS
  zf-FPG_IleRS   5 pRCwryier 13 
                   p+Cwr+ + 
    EGE27493.1 577 PHCWRHKTP 585
                   89***9765 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 1.1e-09
                    B-TTT--BBEEEECTTEEEEE-TTTT. CS
  zf-FPG_IleRS    3 pCpRCwryiervgqagrstyfCprCqk 29  
                    +C RCw++ ++vg + +++++C rC +
    EGE27493.1 1058 KCVRCWHVRTDVGTHAEHPEICGRCVQ 1084
                    9************************87 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00035      0.78      20     103 ..      65     161 ..      48     214 .. 0.68
   2 !   10.7   0.0   0.00011      0.24     202     296 ..     722     819 ..     716     824 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00035
                   TS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB....--SHHHHHHHHHTTS-.........HHHHHHHHHHHHHHHHHHTT----SB--BGGG CS
  tRNA-synt_1e  20 ydashlGhaRslvafDilrrilqalgYdvqfvqnvt....DidDkiikrareeeks.........vkelaekfieefkkdleaLnvlkptleprvse 103
                     ++hlGh+ + v  Di+ ++    gYd  +v         i+ k+ ++  + +++         ++e a+ +++  ++d++ L+vl    +p  + 
    EGE27493.1  65 NGQIHLGHVVNKVLKDIIIKYKTLDGYDAPYVPGWDchglPIEQKVEQKIGKVGQKvnatkfreaCREYAKSQVQLQMADFKRLGVLGDWDNPYLTM 161
                   5689****************************76421111233333333222222233344444477777777777777888888776555555444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00011
                   HHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSS.S--EEEEEEE--EEETTBE--TTTT--..-BHHHHHTTS-HHHHHHHHHSS-TTS-EEE-HHH CS
  tRNA-synt_1e 202 kllgseidihsGGiDLafPhhenelaqseaafd.kqlvkyflhnghlkiegekmsksLknf..itikdvlkkfdprqlRllllsahyrsqldfkeel 295
                   k l++  d++  G+D      +  l  se+ ++  ++ +   h   +  +g+k+sks +n   +   d+ +k+   +lRl + s +yr ++  ++e 
    EGE27493.1 722 KELSNPADLYLEGSDQHRGWFQSSLLVSESIYGrPPYKQVLTHGFTVDAKGHKLSKSKGNTkgFEPSDIANKMGVDILRLWVGSSDYRYEMAVSKEG 818
                   56677777777888888888888888999999966677777788889*************8446678*********************999888776 PP

                   H CS
  tRNA-synt_1e 296 l 296
                   +
    EGE27493.1 819 F 819
                   5 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-06    0.0027      18     116 ..     314     413 ..     300     414 .. 0.78
   2 ?   -2.9   0.0       3.5   7.9e+03      79      98 ..     663     681 ..     611     689 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.2e-06
                     HHHHHHHHHH...HHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHH CS
  Acetyltransf_1  18 daseeefees...fsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaa 108
                     +   e+fe++   + ++  + ++ ++ g++iG+ +++ ++  k +++ i + ++ pe++gkG+  +   +l+ +a++  ++  + ++++e nd++
      EGE27493.1 314 RHLPEVFEPFfeqAVKDKAYAIIDKRTGNIIGTTRFCHDNA-KDDTIGIGFTFITPEFWGKGVNDEIKHTLLNHAFKYrNA--VHFQIHEGNDRS 405
                     444444444411144444466668888**************.9******************************99999555..677888999999 PP

                     HHHHHHTT CS
  Acetyltransf_1 109 irlYeklG 116
                      +  +klG
      EGE27493.1 406 KKAVKKLG 413
                     98887787 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.5
                     HHHHHHHHHHHHHTTESEEE CS
  Acetyltransf_1  79 saLlealeerareegikkiv 98 
                     s+L+e+++++ ++ gi++ +
      EGE27493.1 663 SELIEKAAQIIEKGGIEA-W 681
                     789999999888888876.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1095 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 7166.86
//
Query:       EGE27494.1  [L=409]
Description: major facilitator superfamily protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-20   73.3  35.6    6.1e-17   61.6  14.4    2.2  2  MFS_1     Major Facilitator Superfamily
    8.9e-09   34.4  27.4    7.7e-07   28.0   7.0    2.9  3  MFS_2     MFS/sugar transport protein
    5.9e-07   28.3   5.7    8.2e-07   27.8   5.7    1.2  1  MFS_3     Transmembrane secretion effector
  ------ inclusion threshold ------
      0.083   13.4  22.8       0.95   10.0   0.8    4.7  4  DUF202    Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6  14.4   1.4e-20   6.1e-17      13     267 ..      21     266 ..      12     269 .. 0.81
   2 !   23.7  21.2   4.4e-09     2e-05       3     166 ..     214     375 ..     212     387 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.4e-20
       MFS_1  13 silgpalplalaedlgispseigllltlyalgaavaslplGrlsd.....rfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgagalfpa 105
                  ++g+++ +++ + +  +p+ +g  +++  + +++a l+++++        + +++ +l++++++++++ llllf+++++++ +  v++++++ +l+p+
  EGE27494.1  21 RTVGFLFAWLMLTVFK-NPQHLGVFIGTSWACQVLALLLFSWVCSqpkftIH-SKKiLLCFCVICLLSF-LLLLFIHNYFIFGIIFVISSIFTILLNPL 116
                 5567777777777788.88888877777777778888888999776865344.6663777777777777.777777*********************** PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkall 204
                 g +l+ d++ +++++ ++ + +  +s+ +il p+++g++++++g + +  ++ i+s+++++   l++  ++ + + + +k+           + +k+ll
  EGE27494.1 117 GTSLTNDLYGGNNKSNGFKVRGFVNSINTILSPAISGFIIHYFGAHQIICACIILSFISGI---LFYGIKNIKLQENLEKQS--------KNT-FKILL 203
                 *************************************************************...888888888888876666........455.99*** PP

       MFS_1 205 kdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrl 267
                 k+p    ++l++ll +f+++ ++ + +p  +   ++l+ ++++g+  + ++++++ +++ + +l
  EGE27494.1 204 KNPIERlMVLVSLLANFIITPMIAYIIPYNIANKFKLP-AFYIGISEGCFGIGMILGSVYFLKL 266
                 ***44347888888888777777777777678888888.7888888888888888877776665 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 4.4e-09
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ++++ +++   +++ ++p  +a+ + + +  ig+  +++++g++++s+ +  l ++ +G+ + ++++++l a+g+ll l+  +++l++ + +++G+g  
  EGE27494.1 214 VSLLANFIITPMIAYIIPYNIANKFKLPAFYIGISEGCFGIGMILGSVYFLKLFNKkIGSHKSVVCSIVLVAIGILLSLL-DGFYLFCMALIMMGVGVV 311
                 444555555556777777788**********************99999996665544*****************444445.****************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv 166
                 +++ ++  +    +pk+ r++   ++ a+  + + +g  l  +++ + g+   fy + i+++l+++
  EGE27494.1 312 MFNINSTHIRCTATPKDIRASFEFIFLACCIVFIPIGVFLTTWVL-NNGFLIYFYGV-IICFLLML 375
                 *******************************************99.66774444443.44444433 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   7.0   1.7e-10   7.7e-07     244     372 ..      24     154 ..       1     162 [. 0.85
   2 !   20.2  12.4   4.1e-08   0.00018     177     333 ..     164     315 ..     156     324 .. 0.74
   3 ?   -3.1   3.5      0.48   2.1e+03      75     335 ..     342     374 ..     330     387 .. 0.38

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.7e-10
       MFS_2 244 nglllYyltyvlgngsaasvfllvvtisallgiplwqplak..rlg..kkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsm 338
                   l++  +  v +n +   vf ++  + ++l+++l++++++  +++   k++ l++ +++++ ++l+l++   n+ +f +++vi+++++++++ l +s+
  EGE27494.1  24 GFLFAWLMLTVFKNPQHLGVFIGTSWACQVLALLLFSWVCSqpKFTihSKKILLCFCVICLLSFLLLLFI--HNYFIFGIIFVISSIFTILLNPLGTSL 120
                 5689999999****************************99844444548888888888888888888888..9************************** PP

       MFS_2 339 ladvvDygelktGkrregvffavlsfisklatgi 372
                 + d++  +   +G + +g++ ++++++s +++g+
  EGE27494.1 121 TNDLYGGNNKSNGFKVRGFVNSINTILSPAISGF 154
                 **************************99998887 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 4.1e-08
       MFS_2 177 iialLmllgvi..ivvlgtkervemrkkekteqkeklslleqlkevfrnraf.lillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtis 271
                 ii++ ++l++i  i+++g k+        k +++   +  + +k +++n+   l++l++ l+++  + + + +  Y++    +  ++ + ++ +++ i+
  EGE27494.1 164 IICACIILSFIsgILFYGIKNI-------KLQENLEKQSKNTFKILLKNPIErLMVLVSLLANFIITPMIAYIIPYNIANKFKlPAFYIGISEGCFGIG 255
                 4555555555422344455544.......3344444445556666667765404555556666667778888899***999999*************** PP

       MFS_2 272 allgip.lwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaal 333
                 ++lg++ + + ++k++g +++++++++l++++ +l ll      +lf+++l++ g+gv+++++
  EGE27494.1 256 MILGSVyFLKLFNKKIGSHKSVVCSIVLVAIGILLSLLD---GFYLFCMALIMMGVGVVMFNI 315
                 **98772566789*****************999999999...9****************9987 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.48
       MFS_2  75 aiilavsiillftppelsqsakfiwllvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgyli 173
                  +++ ++++l  ++                                                                                     
  EGE27494.1 342 IVFIPIGVFLTTWV------------------------------------------------------------------------------------- 355
                 22222222222222..................................................................................... PP

       MFS_2 174 faliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisa 272
                                                                                                                    
  EGE27494.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

       MFS_2 273 llgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallp 335
                                                             +   ++i++ gv++++ll+
  EGE27494.1 356 --------------------------------------------LNNGFLIYFYGVIICFLLM 374
                 ............................................2222222222222222222 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   5.7   1.8e-10   8.2e-07      27     361 ..      19     350 ..       2     402 .. 0.69

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1.8e-10
       MFS_3  27 liqeva..asWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavq.lllalvsvlltvlaalgllspwlllaltllig.iGaalnd 121
                  i++v+   +Wlm ++ + p    +  + ++    +l++l    +   ++ k+ +  + +ll    ++l ++ +l +++ + + +++++i+ i + l +
  EGE27494.1  19 SIRTVGflFAWLMLTVFKNPQHLGV-FIGTSWACQVLALLL--FSWVCSQPKFTIHSKkILLCFCVICLLSFLLLLFIHNYFIFGIIFVISsIFTILLN 114
                 4666663358999888888887763.233333333333332..23334455555544303444455666666777777888888888877526677999 PP

       MFS_3 122 PaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwkrevrksslprEkllealraglRft.aasre 219
                 P     +++l   ++ ++   +      i     PA++G ++  +Ga         +  +++  +  +     k+  ++E+l +  +++++   +   e
  EGE27494.1 115 PLGTSLTNDLYGGNNKSNGFKVRGFVNSINTILSPAISGFIIHYFGAHQII-----CACIILSFISGILFYGIKNIKLQENLEKQSKNTFKILlKNPIE 208
                 ******************999999988899999*************97653.....3333333344444444555567777777777777765134445 PP

       MFS_3 220 ikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrL.RerlsserlvllaavalAlvllslalasslwvavlvlllg 317
                   +vlv   + ++ +  +  ++P  + ++ +  a   Gi  g +G+G ilg++   +L  ++++s++ v ++ v +A+ +  l+l +  ++ +++l++ 
  EGE27494.1 209 RLMVLVSLLANFIITPMIAYIIPYNIANKFKLPAFYIGISEGCFGIGMILGSVYFLKLfNKKIGSHKSVVCSIVLVAIGI-LLSLLDGFYLFCMALIMM 306
                 55677777888899999999********************************9877663789*******99999988765.59**************** PP

       MFS_3 318 GaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsl 361
                 G + ++   +      +a+P+ +++    ++l+ +   +  G +
  EGE27494.1 307 GVGVVMFNINSTHIRCTATPKDIRASFEFIFLACCIVFIPIGVF 350
                 *9987654444444456777777776666666655555555555 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.4     0.012        54      16      58 ..      18      62 ..      16      67 .. 0.60
   2 ?    2.7   3.4     0.038   1.7e+02      24      57 ..      86     113 ..      75     115 .. 0.70
   3 ?   10.0   0.8   0.00021      0.95      17      57 ..     253     293 ..     252     300 .. 0.83
   4 ?    7.9   0.3   0.00094       4.2      16      58 ..     301     355 ..     296     362 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.012
      DUF202 16 tslalialglallrffltgepsalgkilg..lilivlgiltllvg 58
                ts+  +++ +a l +   ++p++lg+ +g  +++ vl++l+++++
  EGE27494.1 18 TSIRTVGFLFAWLMLTVFKNPQHLGVFIGtsWACQVLALLLFSWV 62
                555555555555555556788888888872255666666666654 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.038
      DUF202  24 glallrffltgepsalgkilglilivlgiltllv 57 
                 +++ll     + ++   +i+g+i+++ +i+t+l+
  EGE27494.1  86 SFLLLL----FIHNY--FIFGIIFVISSIFTILL 113
                 334443....34455..89************986 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00021
      DUF202  17 slalialglallrffltgepsalgkilglilivlgiltllv 57 
                 ++++i  ++ +l++f+++  s+ +++++++l+++gil+ l+
  EGE27494.1 253 GIGMILGSVYFLKLFNKKIGSHKSVVCSIVLVAIGILLSLL 293
                 789999999****999666666569************9887 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.00094
      DUF202  16 tslalialglallrffl.....tgepsa.......lgkilglilivlgiltllvg 58 
                 ++l ++++g++++++ +     t  p++       +  ++ +++i++g+++  ++
  EGE27494.1 301 MALIMMGVGVVMFNINSthircTATPKDirasfefIFLACCIVFIPIGVFLTTWV 355
                 4566666666666664477777333333333322224666888999998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1340  (0.0747392); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 2730.47
//
Query:       EGE27495.1  [L=133]
Description: carboxymuconolactone decarboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-12   45.3   0.0    9.4e-12   44.8   0.0    1.3  1  CMD       Carboxymuconolactone decarboxylase family
  ------ inclusion threshold ------
       0.06   13.9   0.2       0.71   10.5   0.1    2.2  2  ATP-cone  ATP cone domain


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0     1e-15   9.4e-12       8      84 ..      42     119 ..      35     120 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1e-15
                 HHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHH.HHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
         CMD   8 talrealla.reggLdpkereLialavsaangceyCv.daHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaae 84 
                  +   + ++ r g L+ ker++++l +++a+g  + + ++   aA + G t+eei+e+l q a+ +g+ +a++A+ +++
  EGE27495.1  42 IDSIYGNIYqR-GVLSIKERHIATLSALIAMGSSERQlSFQGLAAYKLGITKEEIQEILIQNAIFSGFTRAMNAAVVLD 119
                 44445555635.78******************888888***********************************998876 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.044   3.9e+02      26      50 ..      23      47 ..       2      88 .. 0.70
   2 ?   10.5   0.1   7.9e-05      0.71      51      84 ..      89     122 ..      82     127 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.044
                HHH-HHHHHHHHHHHHHHHHHHHII CS
    ATP-cone 26 cegseeeideiaeeveaevrkrlrd 50
                ++  ++++++ia  +++ + ++++ 
  EGE27495.1 23 VRRLNDDLYPIAPDLVEMLIDSIYG 47
                3335666666666666666555444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 7.9e-05
                 T-BHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHH CS
    ATP-cone  51 gisteeIqdlvektliehpdyavaaayilyrnlr 84 
                 gi+ eeIq+++++++i ++    + a+++  + +
  EGE27495.1  89 GITKEEIQEILIQNAIFSGFTRAMNAAVVLDEVY 122
                 79**************766666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1005.82
//
Query:       EGE27496.1  [L=31]
Description: hypothetical protein EA1_02507 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      102  (0.00568911); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.24s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 260.18
//
Query:       EGE27497.1  [L=452]
Description: putative pyrimidine permease RutG [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-93  313.7  51.6    1.9e-93  313.3  51.6    1.2  1  Xan_ur_permease  Permease family


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.3  51.6   1.1e-97   1.9e-93       1     383 [.      28     397 ..      28     403 .. 0.97

  Alignments for each domain:
  == domain 1  score: 313.3 bits;  conditional E-value: 1.1e-97
                      HHHHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-..........HHHH CS
  Xan_ur_permease   1 gqllllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvtalmialGsa......edieia 88 
                      gq ++lglQh+lamf+a+v+ Pll+g +           ++++++sGi t+l+++++g+r+p++lgssfaf++++ +a++ a      ++ ++a
       EGE27497.1  28 GQSIMLGLQHVLAMFGATVLAPLLMGFD----------ANLAIMMSGICTILFFVMTGGRVPSYLGSSFAFIGVVATATAHAtgsganSNLSVA 111
                      589*************************..........699********************************88888887788999999**** PP

                      HHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTT CS
  Xan_ur_permease  89 lagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglf 182
                      l+g++ ++++++v+ +++++tg++ ++ +l+pPvvtg+vv++iGl+la+i v++v g +             l++a++++l++  ++vf+ g++
       EGE27497.1 112 LGGIIACGFLYAVIGFIVMATGTQ-WIEKLMPPVVTGAVVMIIGLNLAPITVSGVQGKP-----------FDLWMALMTVLCMGMIAVFAHGFL 193
                      ***********************6.******************************9997...........568********************* PP

                      TTHHHHHHHHHHHHHHHHHH.HTTSSHH.....HHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TIIIIIHH CS
  Xan_ur_permease 183 sqlpiLigiiagwllalfmg.ivnlspe.....vseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkpkpdlr 270
                      ++l +Lig++++++++++ + i+ l +      +++a wf lp    f++p+f++++++++ +va+++v+e++G+i+av+ ++g++l+  p l+
       EGE27497.1 194 QRLLLLIGLVMAYAIYVIATnILGLGEPinfalITDADWFGLP---NFSSPTFDTNALPIIAPVAFILVAENLGHIKAVGAMTGENLT--PYLG 282
                      ********************8777777689999*********9...9*****************************************..**** PP

                      HHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS CS
  Xan_ur_permease 271 ralladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdl 364
                      ra++adG+at ls+ +G++++tty+eniGv+a+t+v+s+ ++v+ag+++++lg++pk++a++++IP+pvl+G+++vvfg+ia++g ++++++++
       EGE27497.1 283 RAFVADGVATALSASVGGTGMTTYGENIGVMAVTRVYSTLIFVLAGIFAMILGFSPKFGAMIQTIPSPVLTGASIVVFGLIAIAGAKIWIDNKV 376
                      ********************************************************************************************** PP

                      -..SHHHHHHHHHHHHHHHH- CS
  Xan_ur_permease 365 d..sarnllivavslvlGlgv 383
                      +  ++ nl++ a++++lG g 
       EGE27497.1 377 NfaNNKNLMVAAITIILGTGD 397
                      *99***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3131.37
//
Query:       EGE27498.1  [L=499]
Description: amino acid transport protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     2e-153  511.4  33.9   2.5e-153  511.0  33.9    1.1  1  Na_Ala_symp  Sodium:alanine symporter family


Domain annotation for each model (and alignments):
>> Na_Ala_symp  Sodium:alanine symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  511.0  33.9  1.4e-157  2.5e-153       5     391 ..      67     480 ..      63     482 .. 0.96

  Alignments for each domain:
  == domain 1  score: 511.0 bits;  conditional E-value: 1.4e-157
  Na_Ala_symp   5 kkkksegeissfqAlatalaarvGtGniaGvatAialGGpGAvfWmwvvallGmatkfvEstLaqlYkekdek.gevrGGpayyiekglkkkwlavlf 101
                  ++++++ +is fqA++t la+rvG+Gn+aGva+Ai +GG+GAvfWmw++al+Gm+++ +Es Laql+k++d++ g++rGGpayyie+gl++kwl++lf
   EGE27498.1  67 RNQHDDAGISGFQAFVTGLASRVGVGNVAGVAIAIGIGGAGAVFWMWLIALIGMCSALAESSLAQLFKVRDATtGQFRGGPAYYIEQGLGQKWLGCLF 164
                  5667899****************************************************************989************************ PP

  Na_Ala_symp 102 avlliialglginavqansiasaleea.............feveklvvgivlavllalvilggikriakvaevvvPvmailYillalvvillniekvp 186
                  a++li+++gl+++++q+n+i+ a+++a             ++  k ++g++l++l+a +i+ggi+r+ak+ae+vvP+ma++Yil+al++il+ni+++p
   EGE27498.1 165 ALALIVCFGLVYQSIQSNTITLAIQSAlgcvvedaicqnqWQSYKHMIGALLVILTAPIIFGGIRRVAKIAEMVVPIMALIYILVALAIILMNITAIP 262
                  **************************9888888888877767778***************************************************** PP

  Na_Ala_symp 187 evlalifksAFgleavagGilg....aaialGvkRglfSneAGlGsapiaaAaaevshpvkqGlvqalgvfidtlvvCtatalvill.........se 271
                  +++alif++AF +ea+ gG++g     a+++G+kRgl+SneAG+Gsap+aaAaa+v+hp  qG++q++gvf+dtl+vC++ta++ill          +
   EGE27498.1 263 SIIALIFEKAFVFEAAGGGLFGsmvsVAMMQGIKRGLYSNEAGQGSAPNAAAAASVKHPLDQGMIQMFGVFVDTLIVCSCTAFIILLaqmpdnaanLS 360
                  **********************99999************************************************************7777666666* PP

  Na_Ala_symp 272 gvaltqaalesvlgsvgalfvaialllFafstilgnyyygeknleyllgkkkklliyrvlvlllvfvgavaslelvwnlaDialglmalvnliaillL 369
                  g++ltqaales++gs+g++f+ai+l++Fafsti+gny y+e+n+++l++++k l+++r+lvl +v++gav+++++vw+++D+++g+ma++nliaillL
   EGE27498.1 361 GIQLTQAALESHVGSWGQYFLAIILFIFAFSTIIGNYAYAESNMQFLKNNTKVLTLFRLLVLGFVYFGAVVKVDVVWDMGDLTMGTMAFINLIAILLL 458
                  ************************************************99999********************************************* PP

  Na_Ala_symp 370 skvvvkalkdYekqkkkgkkep 391
                  s+ v+  ++dY++q+k g   p
   EGE27498.1 459 SRYVFVLIHDYQSQLKLGVAYP 480
                  ****************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3313.74
//
Query:       EGE27499.1  [L=175]
Description: putative alkyl hydroperoxide reductase/thioredoxin [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-11   42.9   0.0    5.7e-11   42.4   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
    4.1e-07   29.8   0.0    5.1e-07   29.5   0.0    1.1  1  Redoxin        Redoxin
    3.9e-06   27.1   0.0    5.8e-06   26.6   0.0    1.2  1  Thioredoxin_8  Thioredoxin-like
    3.9e-05   23.6   0.1    0.00018   21.4   0.0    1.8  2  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.022   15.2   0.0      0.043   14.3   0.0    1.5  1  Thioredoxin_2  Thioredoxin-like domain
      0.034   14.3   0.2      0.085   13.1   0.2    1.8  1  Thioredoxin_7  Thioredoxin-like
       0.39    9.8   1.4        0.8    8.8   1.4    1.5  1  LisH_2         LisH


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.2e-14   5.7e-11       6     103 ..      44     139 ..      42     154 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.2e-14
                 ---EEESTTCEEEECHHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT-EET CS
    AhpC-TSA   6 pdfelknadgetvslsdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakaygvlke 103
                 p+ +lk+ +g++++ +++ + +pv+++f+ + wc vCt   p+ ++l+++     v  i+v + + +++ ++ +++++ f+ + D++g+++ +++   +
  EGE27499.1  44 PNLQLKDYQGTPIDIAAIsQESPVLVYFWGS-WCHVCTITSPKVNQLHQDGY--SVVSIAVKSGDNAQLGQYLQRHQYHFTTINDTDGQIFANWQGQVT 139
                 899***************666**********.**************997765..6777788888888*************************9987644 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0     2e-10   5.1e-07       7     119 ..      44     143 ..      37     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2e-10
                 ---ECCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHHHHTT-T CS
     Redoxin   7 Pdftlplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaftkalGlr 104
                 P+++l++   +g+++++++  ++ +v+v+f+ + +c +C+   p++++l +  +   v  +av + ++a+  + + +++ +f+ + D ++++++++  +
  EGE27499.1  44 PNLQLKD--YQGTPIDIAAiSQESPVLVYFWGS-WCHVCTITSPKVNQLHQD-G-YSVVSIAVKSGDNAQLGQYLQRHQYHFTTINDTDGQIFANWQGQ 137
                 8888877..9*********98999999999999.*********999999777.3.446777888888999**********************9999866 PP

                 TEEE.GGGEEE-EEE CS
     Redoxin 105 leedaseglrtprya 119
                           tp+++
  EGE27499.1 138 ---------VTPSFV 143
                 .........555555 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.3e-09   5.8e-06       3      90 ..      66     146 ..      64     151 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.3e-09
                    EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE- CS
  Thioredoxin_8   3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvld 90 
                     vl+yf+ swc+ c+   pk+++l+++      v+ ++v++  +  +  +yl+ +    +++++ ++   ++  +++ +  P++v+l 
     EGE27499.1  66 PVLVYFWGSWCHVCTITSPKVNQLHQDGY---SVVSIAVKSGDN-AQLGQYLQRH---QYHFTTINDTDGQIFANWQGQVTPSFVILY 146
                    69**********************99986...888889988875.8888899888...566666666677888889999999999985 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.1e-08   0.00018      14      56 ..      61     101 ..      57     119 .. 0.79
   2 ?   -0.2   0.0      0.38   9.9e+02      63      90 ..     129     156 ..     107     164 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 7.1e-08
                  HTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEE CS
  Thioredoxin  14 vakekklvlveFyApwCghCkalaPeleklaeelkdkvklakv 56 
                  +++ +++vlv F+ +wC  C   +P++++l ++    v+ + v
   EGE27499.1  61 ISQ-ESPVLVYFWGSWCHVCTITSPKVNQLHQDGY-SVVSIAV 101
                  556.99************************99876.3444444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.38
                  HHHHHTT-SSSSEEEEEETTEEEEEEES CS
  Thioredoxin  63 dlakkyevegiPtlklfkngkevkkyeg 90 
                  ++ ++++ +  P ++++ +gk  + + g
   EGE27499.1 129 QIFANWQGQVTPSFVILYQGKMTQGMAG 156
                  4555667788999999999998777766 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.7e-05     0.043       3      97 ..      62     152 ..      60     160 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkel..ddvtvrvllfplkpsfepkavaiwcakekk.........kafkd.ieenvelarkygvrgtPtiv. 85 
                    +++ pvlv+f+ ++C  C     ++ +l  d              ++ +++a++  ++ +           f++  ++  +    ++ + tP++v 
     EGE27499.1  62 SQESPVLVYFWGSWCHVCTITSPKVNQLhqD-------------GYSVVSIAVKSGDNAQlgqylqrhqYHFTTiNDTDGQIFANWQGQVTPSFVi 144
                    6899******************999999443.............4555555555555554332222222334443233344445578899999554 PP

  Thioredoxin_2  86 fldgkeivarlp 97 
                    +++gk    + +
     EGE27499.1 145 LYQGK----MTQ 152
                    88888....333 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   3.3e-05     0.085      13      68 ..      60     112 ..      58     146 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.3e-05
                    HHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.... CS
  Thioredoxin_7  13 aaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdani...l 68 
                    a ++++pvlv+f  swc+ C+      +++++v ++ ++ + ++ + v ++d  +   +
     EGE27499.1  60 AISQESPVLVYFWGSWCHVCT------ITSPKVNQLHQDGYSVVSIAVKSGDNAQlgqY 112
                    55799***************5......66777777688888888888888887665541 PP

>> LisH_2  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.4   0.00031       0.8       8      17 ..     112     121 ..     110     122 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00031
      LisH_2   8 YLqsqgYnYT 17 
                 YLq+++Y++T
  EGE27499.1 112 YLQRHQYHFT 121
                 9********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1253.85
//
Query:       EGE27500.1  [L=37]
Description: hypothetical protein EA1_02527 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 284.94
//
Query:       EGE27501.1  [L=150]
Description: hypothetical protein EA1_02532 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-09   36.0   2.1    9.3e-09   35.6   2.1    1.2  1  CopD      Copper resistance protein D
  ------ inclusion threshold ------
       0.91    9.6  14.2       0.79    9.8   5.5    3.1  2  DUF2269   Predicted integral membrane protein (DUF2269)


Domain annotation for each model (and alignments):
>> CopD  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   2.1     1e-12   9.3e-09       5     101 ..      45     142 ..      41     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 1e-12
        CopD   5 rrFsrlalaavavvlvtGvvnallrvg.lagllt..tayGrlllaKlalllvllalaalnrfrlvprleaatgaggqalrhrlrrsaalelvlalvvll 100
                 + F++l++ a++v ++tG+++a+ +++ ++ l++   +  +l+ +K+  l+++++ a+ +++ ++prl++  + g+++lrh ++ +++l++vl+l+ ++
  EGE27501.1  45 NSFEKLGMTALIVQVLTGFYMAHKYLPsFGMLTDyhNQISVLISMKITWLIFTILTALSAQLIVIPRLKK--DLGNAKLRHIFAGHIILVTVLGLAFMT 141
                 68***********************9977777776666669***************************65..6688999****************9665 PP

        CopD 101 l 101
                  
  EGE27501.1 142 T 142
                 4 PP

>> DUF2269  Predicted integral membrane protein (DUF2269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.5   8.8e-05      0.79       3      70 ..       5      69 ..       3     110 .. 0.77
   2 ?    3.5   1.4    0.0077        69       4      25 ..     120     141 ..     118     145 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 8.8e-05
     DUF2269  3 lkllHilsavlllgtgigiafyll.rasrtrdaaviaevarlvvladwlftatavillpvtGlwlvhla 70
                l + Hil+a++ +g+ + + +  l +a r++d + i +    +      + +ta+i++++tG++++h  
  EGE27501.1  5 LLFWHILGACIWVGGHLYLCLCILpKAVRHQDSQPILNFENSFE----KLGMTALIVQVLTGFYMAHKY 69
                66789999999999988877755536777777776666555443....367899*************86 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0077
     DUF2269   4 kllHilsavlllgtgigiafyl 25 
                 kl Hi++  ++l t++g+af++
  EGE27501.1 120 KLRHIFAGHIILVTVLGLAFMT 141
                 677*****************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1173.52
//
Query:       EGE27502.1  [L=107]
Description: ferredoxin 1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-22   77.1   0.9    9.8e-22   76.7   0.9    1.2  1  DUF3470   Domain of unknown function (DUF3470)
    1.1e-09   37.7  19.9      6e-07   29.0   5.2    3.2  3  Fer4      4Fe-4S binding domain
    4.3e-08   33.1   8.1    0.00011   22.2   0.2    2.1  2  Fer4_10   4Fe-4S dicluster domain
    1.3e-06   29.2   7.8    0.00057   20.8   0.3    2.2  2  Fer4_16   4Fe-4S double cluster binding domain
    2.9e-06   27.1  19.3    0.00018   21.4   4.9    2.3  2  Fer4_6    4Fe-4S binding domain
    3.3e-06   27.1  11.1     0.0023   18.1   0.4    2.2  2  Fer4_21   4Fe-4S dicluster domain
      4e-06   26.6  14.4     0.0021   18.1   3.5    2.3  2  Fer4_2    4Fe-4S binding domain
    1.8e-05   25.2  15.6    0.00015   22.3  15.9    2.0  2  Fer4_7    4Fe-4S dicluster domain
      7e-05   22.9  13.2    0.00023   21.3  13.5    1.7  1  Fer4_9    4Fe-4S dicluster domain
    0.00024   21.5   7.4     0.0096   16.4   0.0    2.2  2  Fer4_8    4Fe-4S dicluster domain
     0.0015   18.9  15.6      0.029   14.8   1.7    2.3  2  Fer4_4    4Fe-4S binding domain
     0.0064   17.0  13.4      0.035   14.7   2.8    2.2  3  Fer4_17   4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.079   13.1   6.0       0.12   12.6   6.0    1.3  1  Fer4_11   4Fe-4S dicluster domain
       0.38   11.8  19.7        1.3   10.1   7.1    2.3  2  Fer4_3    4Fe-4S binding domain
       0.72   10.4  17.9       0.84   10.2   6.4    2.4  2  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
        3.5    7.8   8.8        2.2    8.4   2.9    2.3  2  ETF_QO    Electron transfer flavoprotein-ubiquinone oxidoredu


Domain annotation for each model (and alignments):
>> DUF3470  Domain of unknown function (DUF3470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.9   8.7e-25   9.8e-22       1      42 []      66     107 .]      66     107 .] 0.98

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 8.7e-25
     DUF3470   1 ekfielNaeLAkqWPnItekkdplpDAdewkgvpdKlekLer 42 
                 e+f+++N+eL++ WPnItekkd+lpD ++w+gv++Kl++Ler
  EGE27502.1  66 EEFLKINEELSAVWPNITEKKDALPDYEKWDGVEGKLQYLER 107
                 68**************************************97 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0091        10       3      12 ..       4      13 ..       2      14 .. 0.84
   2 !   11.4   2.3    0.0002      0.23      14      23 ..      17      26 ..      15      27 .. 0.91
   3 !   29.0   5.2   5.3e-10     6e-07       2      23 ..      34      55 ..      33      56 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0091
                EETTTSSS-T CS
        Fer4  3 ideekCigCG 12
                + ++ Ci+C+
  EGE27502.1  4 VVTDNCIRCK 13
                679******7 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0002
                HHHHSTTTEE CS
        Fer4 14 CvevCPvgAI 23
                CvevCPv++ 
  EGE27502.1 17 CVEVCPVDCF 26
                ********96 PP

  == domain 3  score: 29.0 bits;  conditional E-value: 5.3e-10
                EEETTTSSS-THHHHHSTTTEE CS
        Fer4  2 videekCigCGaCvevCPvgAI 23
                vi+++ Ci C +C+  CP +AI
  EGE27502.1 34 VINPDECIDCALCEPECPANAI 55
                8********************9 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   3.3   4.1e-05     0.046       6      21 ..       6      23 ..       2      29 .. 0.85
   2 !   22.2   0.2     1e-07   0.00011       2      24 ..      33      61 ..      32      94 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.1e-05
     Fer4_10  6 ddtCirCg..kCvkaCPa 21
                +d CirC+  +Cv++CP+
  EGE27502.1  6 TDNCIRCKytDCVEVCPV 23
                588999998899999998 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1e-07
     Fer4_10  2 vvidddtCirCgkCvkaCPadl......t 24
                +vi++d Ci C+ C   CPa++       
  EGE27502.1 33 LVINPDECIDCALCEPECPANAifsedeV 61
                589*****************777665552 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   2.3   0.00031      0.35       1      20 [.       8      29 ..       8      38 .. 0.82
   2 !   20.8   0.3     5e-07   0.00057       2      47 ..      40      94 ..      39     101 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00031
     Fer4_16  1 rCgtCgk..CaevCPtnaikek 20
                +C++C+   C+evCP++++ e 
  EGE27502.1  8 NCIRCKYtdCVEVCPVDCFYEG 29
                599**9888*******988665 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 5e-07
     Fer4_16  2 CgtCgkCaevCPtnaikek......kekeiearecisy...ntaekkdlaedeek 47
                C++C  C   CP+nai ++      +e+ ++++e+ s+   n +ekkd+ +d+ek
  EGE27502.1 40 CIDCALCEPECPANAIFSEdevpsgQEEFLKINEELSAvwpNITEKKDALPDYEK 94
                ****************987222222222234444444477777777776666655 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   6.4   0.00021      0.24       6      22 ..       6      24 ..       3      26 .. 0.82
   2 !   21.4   4.9   1.6e-07   0.00018       3      24 .]      34      55 ..      32      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
      Fer4_6  6 pdkCigCgd..CvrvCPeg 22
                 d+Ci C    Cv vCP +
  EGE27502.1  6 TDNCIRCKYtdCVEVCPVD 24
                69*****5558******76 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.6e-07
      Fer4_6  3 eidpdkCigCgdCvrvCPegai 24
                +i+pd Ci+C  C+  CP++ai
  EGE27502.1 34 VINPDECIDCALCEPECPANAI 55
                89*******************8 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   4.8   6.2e-05      0.07      36      56 ..       4      25 ..       1      28 [. 0.84
   2 !   18.1   0.4     2e-06    0.0023       3      56 ..      35      54 ..      30      73 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.2e-05
     Fer4_21 36 vvedeCvGCnl..CssvCPvedc 56
                vv+d+C+ C+   C++vCPv dc
  EGE27502.1  4 VVTDNCIRCKYtdCVEVCPV-DC 25
                789******8656******9.88 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2e-06
     Fer4_21  3 idedkCigCgkCliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPvedc 56
                i++d+Ci+C +C   C+ +                                  +
  EGE27502.1 35 INPDECIDCALCEPECPAN----------------------------------A 54
                5566666666666666543..................................3 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   3.5   1.8e-06    0.0021       4      21 ..       3      22 ..       1      23 [. 0.90
   2 !   14.2   3.2   3.1e-05     0.034       4      22 .]      34      52 ..      31      52 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.8e-06
      Fer4_2  4 vvdtdrCigCg..aCvsaCP 21
                +v+td+Ci+C+   Cv +CP
  EGE27502.1  3 FVVTDNCIRCKytDCVEVCP 22
                689*******889******* PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.1e-05
      Fer4_2  4 vvdtdrCigCgaCvsaCPa 22
                v+++d Ci C  C   CPa
  EGE27502.1 34 VINPDECIDCALCEPECPA 52
                79****************8 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   6.3   0.00098       1.1      34      51 ..       5      24 ..       2      25 .. 0.76
   2 !   22.3  15.9   1.3e-07   0.00015       2      52 .]       9      54 ..       8      54 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00098
      Fer4_7 34 dpekClgCga..CvavCPtg 51
                + ++C+ C+   Cv+vCP++
  EGE27502.1  5 VTDNCIRCKYtdCVEVCPVD 24
                56899999755599999987 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 1.3e-07
      Fer4_7  2 CigCg..aCvaaCpvkaieldeeenekgtekveidpekClgCgaCvavCPtga 52
                Ci C+   Cv++Cpv++++  +         ++i+p++C++C  C+ +CP++a
  EGE27502.1  9 CIRCKytDCVEVCPVDCFYEGPN-------FLVINPDECIDCALCEPECPANA 54
                ****8779**********98776.......489*****************997 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3  13.5     2e-07   0.00023       1      51 []       8      55 ..       8      55 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2e-07
      Fer4_9  1 kCtgCga..CveaCpagvvvedaaerkarlraaseeaCigCgaCveaCpkgai 51
                +C++C++  Cve+Cp + + e  +   ++ +     +Ci+C  C+  Cp +ai
  EGE27502.1  8 NCIRCKYtdCVEVCPVDCFYEGPNFLVINPD-----ECIDCALCEPECPANAI 55
                6****9888**********887776666653.....5*************987 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.4     0.014        15      49      63 ..       7      23 ..       5      27 .. 0.59
   2 !   16.4   0.0   8.6e-06    0.0096       4      22 ..      39      57 ..      37     101 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.014
      Fer4_8 49 wsCttcga..CtevCpv 63
                ++C  c+   C+evCpv
  EGE27502.1  7 DNCIRCKYtdCVEVCPV 23
                45666654446666665 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 8.6e-06
      Fer4_8  4 kCieCgaCqsaCpvlrrtk 22
                +Ci C +C+ +Cp+   + 
  EGE27502.1 39 ECIDCALCEPECPANAIFS 57
                7***********9544443 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   6.4    0.0014       1.5       2      16 ..       7      23 ..       6      26 .. 0.87
   2 !   14.8   1.7   2.6e-05     0.029       1      16 [.      37      52 ..      37      63 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0014
      Fer4_4  2 erCigCgs..CvaaCPq 16
                ++Ci+C+   Cv +CP+
  EGE27502.1  7 DNCIRCKYtdCVEVCPV 23
                89*****667******7 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.6e-05
      Fer4_4  1 qerCigCgsCvaaCPq 16
                ++ Ci+C  C+  CP 
  EGE27502.1 37 PDECIDCALCEPECPA 52
                689************6 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.4     0.014        16       1      15 [.       8      24 ..       8      36 .. 0.84
   2 !   13.9   3.0   5.5e-05     0.061      44      59 ..      38      53 ..      30      55 .. 0.82
   3 !   14.7   2.8   3.1e-05     0.035       1      20 [.      39      58 ..      39      86 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.014
     Fer4_17  1 rCiqCgy..ClpeCpsy 15
                +Ci+C+y  C+++Cp  
  EGE27502.1  8 NCIRCKYtdCVEVCPVD 24
                6*****999*****974 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.5e-05
     Fer4_17 44 slCieCgeCerkCPqg 59
                ++Ci C +Ce +CP++
  EGE27502.1 38 DECIDCALCEPECPAN 53
                6788888888888875 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 3.1e-05
     Fer4_17  1 rCiqCgyClpeCpsyeaydn 20
                +Ci C+ C+peCp +++ ++
  EGE27502.1 39 ECIDCALCEPECPANAIFSE 58
                58888888888887777554 PP

>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   6.0    0.0001      0.12       4      64 ..       3      60 ..       1      67 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
     Fer4_11  4 lflpeqCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykivrknee 64
                +++ ++C  C    Cv+++p++ +++ +     +++++++  ++  +   cP ++++ ++e
  EGE27502.1  3 FVVTDNCIRCKYTDCVEVCPVDCFYEGP--NFLVINPDECI-DCALCEPECPANAIFSEDE 60
                567899*******************999..78899999996.9***********9998876 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   7.1    0.0012       1.3       1      14 [.       9      24 ..       9      25 .. 0.84
   2 ?    7.6   4.7    0.0075       8.4       1      15 []      40      54 ..      40      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0012
      Fer4_3  1 CtgCg..aCvevCPvg 14
                C+ C    CvevCPv+
  EGE27502.1  9 CIRCKytDCVEVCPVD 24
                999*5557******97 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0075
      Fer4_3  1 CtgCgaCvevCPvgA 15
                C+ C +C+  CP +A
  EGE27502.1 40 CIDCALCEPECPANA 54
                9***********987 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.6     0.015        17       4      23 ..       7      29 ..       4      33 .. 0.77
   2 ?   10.2   6.4   0.00075      0.84       1      23 [.      35      59 ..      35      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.015
     Fer4_13  4 dtCiac..gaCvelaP.dvFeed 23
                d+Ci c  + Cve++P d+F e 
  EGE27502.1  7 DNCIRCkyTDCVEVCPvDCFYEG 29
                89****5558******6777665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00075
     Fer4_13  1 VDrdtCiacgaCvelaPd..vFeed 23
                ++ d+Ci+c++C   +P   +F ed
  EGE27502.1 35 INPDECIDCALCEPECPAnaIFSED 59
                789**************63356665 PP

>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   2.6      0.41   4.6e+02      72      83 ..       6      17 ..       2      31 .. 0.83
   2 ?    8.4   2.9     0.002       2.2      66      91 ..      31      56 ..      17      68 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.41
                CCC--S--HHHH CS
      ETF_QO 72 aqnCvhCktCdi 83
                + nC+ Ck  d 
  EGE27502.1  6 TDNCIRCKYTDC 17
                68******8875 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.002
                EEEEE-CCC--S--HHHHH-TT--EE CS
      ETF_QO 66 kklqinaqnCvhCktCdikdpsqnie 91
                + l+in  +C+ C  C+   p + i 
  EGE27502.1 31 NFLVINPDECIDCALCEPECPANAIF 56
                5799*************999999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 838.25
//
Query:       EGE27503.1  [L=171]
Description: hypothetical protein EA1_02542 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.044   13.5   0.0      0.082   12.6   0.0    1.4  1  DUF697    Domain of unknown function (DUF697)


Domain annotation for each model (and alignments):
>> DUF697  Domain of unknown function (DUF697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.6e-06     0.082      21      68 ..      25      71 ..       7      76 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.6e-06
      DUF697 21 eakkliekyawekAlvvavsPlalvDllavaavnlrlirelaelYgie 68
                e ++l  k+ + +++ +av Pl+++D+++ +a+ ++l  e+ e +g++
  EGE27503.1 25 ECQSL-AKSRAKVSAGAAVIPLPFLDVAVDVAMLTKLLPEITERFGLK 71
                44444.45555666667999*****************99999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1271.88
//
Query:       EGE27504.1  [L=516]
Description: integral membrane protein MviN [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.4e-129  430.5  34.5   8.7e-129  430.0  34.5    1.2  1  MurJ             Lipid II flippase MurJ
    1.2e-11   44.9  18.7    1.2e-11   44.9  18.7    4.4  4  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
     0.0046   16.6   5.7     0.0046   16.6   5.7    3.3  3  MatE             MatE


Domain annotation for each model (and alignments):
>> MurJ  Lipid II flippase MurJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.0  34.5  1.5e-132  8.7e-129       3     427 ..      33     467 ..      31     493 .. 0.94

  Alignments for each domain:
  == domain 1  score: 430.0 bits;  conditional E-value: 1.5e-132
        MurJ   3 allGaglladaFnvAfklPnllrrlfaegalssaFvPvlaeak.kkdeekaaefvrkvltllilvlllvtligilaapllirllatgf..deetlelav 98 
                 +++Gag l daF vAfk+Pn+lrrlfaega+s+aFvPvl+e+k +    + + ++ +v+++l+lvll++t+  i++ap++++l+a+gf  d++++  ++
  EGE27504.1  33 SVFGAGGLMDAFLVAFKIPNFLRRLFAEGAFSQAFVPVLTEYKeARTLTEVQLLIARVSGVLSLVLLVLTVAVIFLAPQVVYLFAPGFadDPQKFDTTA 131
                 68*****************************************8888999999********************************************** PP

        MurJ  99 sllrillpylllvslsavfgavLnarkkFfapafsPvllNvsvIltllllanklgeeailaLaiGvliGgvlqllvqlpalkkaglllkprfafrdegl 197
                 +llr+++pyll+vs++a+fg++L+++++F+apaf+PvllN+++I ++l+la+ l+ ++i+aL+++v i g+lqll+qlp l + +ll  p + f+deg+
  EGE27504.1 132 KLLRLTFPYLLFVSMTAFFGSILQSYGRFAAPAFAPVLLNLCMIGGTLILAPMLD-KPIMALGYAVAISGILQLLIQLPQLWQQKLLIPPSISFKDEGV 229
                 *******************************************************.******************************************* PP

        MurJ 198 kkflklllptllgvsvsqlnllvdtalAsflaegsvsilayadrilqlPlglfgvsistvlLPrlSrsakekdedevrdllsqairltllllipvsfgl 296
                 +++lkl+lp+++gvsv q+nll++t++As +++gsvs+++ a+r+ +lPlgl+gv+i tv+LP+lS s ++ d +++r++l++a rl+l++ ip+s  +
  EGE27504.1 230 RRILKLMLPAIFGVSVTQINLLLSTVFASLMIAGSVSWMYAAERLSELPLGLIGVAIGTVILPSLSSSRAKSDDENFRQTLDWAARLILVIGIPASLAI 328
                 *************************************************************************************************** PP

        MurJ 297 lvlskpivsllferGnFseedveataevLaayalgLipyalvklllrvfYAredtktPvkislislvlnills......llllpplgvvglalatslsa 389
                 +vls+ ++ +lf rG+F+++d+ + + +L+  + g++ ++l+k+++++f+A++dtktPvki++is++ n+++s      + l++   + glalat++++
  EGE27504.1 329 FVLSDILMDALFVRGQFTHQDALMSGIALKSLSGGILGFMLIKIFAPAFFANQDTKTPVKIGIISVFANMIFSvvfiglFYLMKLPLHGGLALATTAAS 427
                 *************************************************************************8887766677777789********** PP

        MurJ 390 liglvllyvllrkrlklteargiktflak..lvvllalaa 427
                  ++++lly +l +r  + ++  +k+ +++  ++ ++++++
  EGE27504.1 428 FVNAGLLYAVLHRRGIYRFGTHWKKMIRQfvIANIAMVIS 467
                 ****************999999999999943222222222 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   4.8       1.7     1e+04      79     135 ..      79      97 ..       8     120 .. 0.49
   2 !    6.4  18.1    0.0015       8.7       2     127 ..     134     263 ..     133     295 .. 0.72
   3 ?   -3.3   0.1       1.5   8.7e+03     121     136 ..     316     331 ..     306     337 .. 0.59
   4 !   44.9  18.7     2e-15   1.2e-11       2     142 ..     357     507 ..     356     508 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.7
  Polysacc_synt_C  79 rllgiklellrrllkpllaalvmgivvylllllllgllllaalalllavlvgalvYl 135
                       l+ ++l                                      l+a + g+l  +
       EGE27504.1  79 TLTEVQL--------------------------------------LIARVSGVLSLV 97 
                      2333333......................................222222222222 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0015
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfg..ivGaaiatvlallvvavln...lyalrrllgikl....e 86 
                      L++  ++++f s++ +++siLq+ gr  +++ a v+  l+ ++ +l+l p++   i+   +a +++ ++ ++++   l+  + l+  ++    e
       EGE27504.1 134 LRLTFPYLLFVSMTAFFGSILQSYGRFAAPAFAPVLLNLCMIGGTLILAPMLDkpIMALGYAVAISGILQLLIQlpqLWQQKLLIPPSIsfkdE 227
                      788899********************************************99656666666677776666666621155555555544488886 PP

  Polysacc_synt_C  87 llrrllkpllaalvmgivvylllllllgllllaalalllav 127
                       +rr+lk++l a++ g+ v+ ++lll +++     +l++a+
       EGE27504.1 228 GVRRILKLMLPAIF-GVSVTQINLLLSTVFA----SLMIAG 263
                      67777665444444.4444446666666554....334443 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.5
  Polysacc_synt_C 121 lalllavlvgalvYll 136
                      l+l++++ +  ++++l
       EGE27504.1 316 LILVIGIPASLAIFVL 331
                      3555555555555554 PP

  == domain 4  score: 44.9 bits;  conditional E-value: 2e-15
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfgi......vGaaiatvlallvvavlnlyalrrllgikl..el 87 
                      L  l+ +i+ ++l+ +++  + +   +k+++k+ +i++++++i+++++i lf +       G a+at++a +v a l++  l+r+  +++  + 
       EGE27504.1 357 LKSLSGGILGFMLIKIFAPAFFANQDTKTPVKIGIISVFANMIFSVVFIGLFYLmklplhGGLALATTAASFVNAGLLYAVLHRRGIYRFgtH- 449
                      677999*******************************************8776667788667*****************************55. PP

  Polysacc_synt_C  88 lrrll.kpllaalvmgivvylllllllglllla..alalllavl.vgalvYlllllllr 142
                      +++++   ++a ++m+i +  + l l ++  ++   +a+ll+++ +ga++Y++ ll+++
       EGE27504.1 450 WKKMIrQFVIANIAMVISLS-VILPLYPIDANHwlKIAILLGICgFGAIIYGITLLITG 507
                      66666377788888888843.333232333333334455666544***********997 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   5.7   7.7e-07    0.0046      50     153 ..      65     172 ..      14     180 .. 0.76
   2 !    9.1   9.5   0.00016      0.96       1     160 [.     238     402 ..     238     403 .. 0.83
   3 ?   -2.5   1.4      0.61   3.6e+03     104     134 ..     478     508 ..     445     512 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.7e-07
        MatE  50 talttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslf....tqdeevlelakrylrililgipalalqlvlsgilrgagktkvp 144
                  a  ++ + +  a+  ++++  + +   +l l+ l+++++v+++++q ++lf     +d++    ++++lr++++++++ +++  + +il+++g++ +p
  EGE27504.1  65 QAFVPVLTEYKEARTLTEVQLLIARVSGVLSLVLLVLTVAVIFLAPQVVYLFapgfADDPQKFDTTAKLLRLTFPYLLFVSMTAFFGSILQSYGRFAAP 163
                 5555555666666666666666666666666666666666688888888886222267888************************************** PP

        MatE 145 lyislisll 153
                 +++ ++ +l
  EGE27504.1 164 AFAPVLLNL 172
                 998766555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00016
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfv.fllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqil 98 
                 P+++ + + ++  l++t++++ + + +++ + +a ++++l    ++++++t + +  + +  + + ++++++l  +  l l+++++++l+++++s++++
  EGE27504.1 238 PAIFGVSVTQINLLLSTVFASLMIAGSVSWMYAAERLSELPLGlIGVAIGTVILPSLSSSRAKSDDENFRQTLDWAARLILVIGIPASLAIFVLSDILM 336
                 778888888888888888888888888888888888888755549999999999999999999999********************************* PP

        MatE  99 slftqdee....vlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplny 160
                   +    +     + ++   l+ l  gi+++ l  +++ ++ + ++tk+p+ i +is+  n+++++
  EGE27504.1 337 DALFVRGQfthqDALMSGIALKSLSGGILGFMLIKIFAPAFFANQDTKTPVKIGIISVFANMIFSV 402
                 998888884444233445556667777888888899999999*********************986 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.61
        MatE 104 deevlelakrylrililgipalalqlvlsgi 134
                 d++   +++ +l i ++g+++++++l+++g+
  EGE27504.1 478 DANHWLKIAILLGICGFGAIIYGITLLITGF 508
                 3333334455566666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3552.70
//
Query:       EGE27505.1  [L=195]
Description: N-acetyl-anhydromuranmyl-L-alanine amidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-25   88.2   0.3    8.8e-25   87.6   0.3    1.3  1  Amidase_2  N-acetylmuramoyl-L-alanine amidase


Domain annotation for each model (and alignments):
>> Amidase_2  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.3   4.9e-29   8.8e-25       6     125 ..      35     178 ..      30     179 .. 0.85

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 4.9e-29
                 EEEEEE.................EBSS.-HHHHHHHHHHSHHHHTTTS..S-SEEE-SSSSEEESS-TTCEESSSSS......EHCHHGEEEEEESSTT CS
   Amidase_2   6 dfiviH.................htagssaagalavaaaeyaastngs.igyhylidkdGtiyqlvdengrawHagd......kggNdnsigIElvgng 80 
                 ++iviH                 h +   ++++l+   + y++ +++  +++h++i+++G ++q+v++n+rawHag+      +++Nd +igIEl+g  
  EGE27505.1  35 TGIVIHnislppsqfgqvnadgvHHVKAFFQNQLNPDDHVYFQGIHTLkVSAHLFIERNGSVTQFVNFNDRAWHAGQsaylgrQNCNDFTIGIELEGAD 133
                 5666666666666666666666644456899999998888888766665669*********************************************97 PP

                 EEESCHHHHHHHHHHHHHHHHHHHHTEEEGGGEEEHHHH...TB-TTC CS
   Amidase_2  81 dgkeppteaqyealakLvaallkrygippdrrvvgHsdi...rktdPg 125
                   + p+++ qy+al +++ a+++ y  + +r+++gHsdi   rktdPg
  EGE27505.1 134 --DIPFEAVQYQALGQIIVAIYDAYPAT-RRHLMGHSDIaphRKTDPG 178
                 ..***********************777.566****999999*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1566.30
//
Query:       EGE27506.1  [L=615]
Description: hypothetical protein EA1_02557 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-40  138.2   0.0    3.2e-40  137.5   0.0    1.3  1  DUF4105      Domain of unknown function (DUF4105)
  ------ inclusion threshold ------
      0.044   13.4   0.0        0.1   12.2   0.0    1.7  1  CRPV_capsid  CRPV capsid protein like


Domain annotation for each model (and alignments):
>> DUF4105  Domain of unknown function (DUF4105)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.0   3.6e-44   3.2e-40       2     166 ..     158     323 ..     157     327 .. 0.95

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 3.6e-44
     DUF4105   2 efewwtrtldldslslvlfasaylnnpaSmfGHtlLrfgfkdgeed..ravnysaevrkeenelfyalkglfggyegsfvvapyrdkireytnvekrdv 98 
                 +f+ + +tl++++lsl+ fa+++ nn+aS+f+H+l+r+++ ++e++   a+ny+++ +k ++ +++++k + ggy++++ ++py++k ++y    +rd+
  EGE27506.1 158 DFHAFAGTLNAKRLSLI-FAEEHPNNIASAFAHVLMRVDDGQDEDEaaTAINYTVQPNKADGVIVSTVKSASGGYPAVMEIMPYQKKADDYLVKDERDL 255
                 5788999**********.**********************99988899*************************************************** PP

     DUF4105  99 weyrLnltpeevrallahiwelknkpfdYyflteNCatrllelldaarpgllllsefelwvlPldtvr 166
                 w+++Lnltp+ev ++++hiwe+k+ ++ Y+f+++NCat++++l+d++rp+++ + +    ++P+ +  
  EGE27506.1 256 WQFSLNLTPKEVTQIVRHIWEVKEMKRPYFFTHDNCATEIVRLIDVVRPEGNIQADIGNIAIPSRIAA 323
                 *****************************************************999998899987655 PP

>> CRPV_capsid  CRPV capsid protein like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.1e-05       0.1     111     143 ..     535     567 ..     449     575 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.1e-05
  CRPV_capsid 111 dktgasvyiqpnlegvaefeiPYYsqyrklPat 143
                  +  g  +y ++nl g++++++PYY ++   P  
   EGE27506.1 535 TDIGCIHYANENLRGLMQLSLPYYYHFDNAPSD 567
                  4455556*****************999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4336.05
//
Query:       EGE27507.1  [L=282]
Description: putative nucleoside-diphosphate-sugar epimerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0066   15.9   0.0       0.01   15.3   0.0    1.3  1  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.09   12.9   0.0        1.8    8.7   0.0    2.2  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.2e-06      0.01       7     135 ..       9     134 ..       4     141 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-06
                 TSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHHHHHHHHHHH. CS
   Epimerase   7 tGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAa.vggvaassedpadfieknlqgtlnlleaar. 103
                 +G iG+ l+ +l+++ ++v +++r+ ++  t  l++    ++ +++++a +  ++  ++    hlA  +   +    ++ d+ ++ l++ +++++ a+ 
  EGE27507.1   9 QGNIGKPLAIRLAKA-HTVKTVARRLHEYGT--LAK----YIHFLQKDAKTLTLD--DVKDTTHLAIiITPSNIGRASALDYQKSYLAVCQHIVDLANq 98 
                 588999999998865.676666666333333..332....555555555555555..455556666644444555577889999999999999999996 PP

                 ....HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS- CS
   Epimerase 104 ....kagvkrllflsSsevYGkdaeqpkeettltgp 135
                     ++++k++lf+sS++vYG+++    +et+   p
  EGE27507.1  99 scewQQKLKQVLFVSSTSVYGQNQGEWIDETAPALP 134
                 666666999************999844666665555 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0002       1.8       4      35 ..       6      36 ..       3     115 .. 0.66
   2 ?    2.1   0.0     0.021   1.9e+02      71     109 ..     143     182 ..     131     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0002
                   EE--SHHHHHHHHHHHHTT-EEEEE-SSHHHH CS
  NAD_binding_2  4 fiGlGvMGsnmalnllkagykvavynrtkekv 35
                   +iG G++G+++a +l+ka ++v  + r+  + 
     EGE27507.1  6 MIGQGNIGKPLAIRLAKA-HTVKTVARRLHEY 36
                   8**************987.4555555554444 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.021
                    HHHHS.HCCC--TT-EEEE-S---HHHHHHHHHHHHHTT- CS
  NAD_binding_2  71 evieg.llealkkgdilidgstsspedtrelakelkekgl 109
                    +  e+ l +++ k +i++  + +  +++++l ++++++ l
     EGE27507.1 143 KDAEDlLWQTFGKRAIIVRAGGIYHKNSIRLIEQARQAHL 182
                    33344688999**********************9887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2101.29
//
Query:       EGE27508.1  [L=489]
Description: 2-oxoglutarate/malate translocator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.4e-135  450.8  45.3   7.8e-135  450.5  45.3    1.0  1  Na_sulph_symp  Sodium:sulfate symporter transmembrane region
    2.7e-17   62.9  44.3    2.7e-17   62.9  44.3    2.7  2  CitMHS         Citrate transporter


Domain annotation for each model (and alignments):
>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  450.5  45.3  8.7e-139  7.8e-135       6     472 .]      11     489 .]       8     489 .] 0.97

  Alignments for each domain:
  == domain 1  score: 450.5 bits;  conditional E-value: 8.7e-139
  Na_sulph_symp   6 klllllvvlliilllPapdgleskawrllaifiaaivglileplplavialialsllavligvla.....akalsevlsgfssdttlLvfaallia 96 
                     l++++++ + ill+P+p+g++ +aw lla f+ +i  +i +++p ++ +++a++l+av +++ a     + a++++ls f +  ++L+  +++i+
     EGE27508.1  11 PLVIAIALSVTILLIPTPEGVTDQAWNLLALFVGVIAAIIGKAMPIGALSILAITLVAVTGITVAdggsaNDAMKDALSSFANPLIWLIGVSIMIS 106
                    6899*****************************************************999999999**9999************************ PP

  Na_sulph_symp  97 aavektgLgkRiAlvlvkivGkrtliLgyalvladlllapatpsntAraggivfpvikslssafgsepekqserkigaylmltvvqsasitsiafl 192
                    +++ ktgLg Ri ++++ i+Gk+tl++gy+l +++l+lap+tpsntAr g+i++p+++ ++ +f+s+p k+++  ig+yl l+ + s+ i+s++f+
     EGE27508.1 107 RGLLKTGLGARIGYIFIAIFGKKTLGVGYSLAFSELILAPVTPSNTARGGAIMHPIMRAIADSFDSSPSKNTQDTIGKYLALVNYHSNPISSAMFI 202
                    ************************************************************************************************ PP

  Na_sulph_symp 193 TamApNllllglinsilg..veitwasWflaaiptgvillllvplllyvlyppeikkkeeakavaktelkelGpltarekallilfvlllllWifg 286
                    Ta+ApN+l+++li+++lg  ++++w +W+ a++++g++ + l+pl+ly + pp+ik++++a++ ak++l+ +G +++ e ++l++f +lll W+  
     EGE27508.1 203 TATAPNPLVVNLIAETLGseFRLSWSQWAWAMLIPGLVAFALMPLVLYFVSPPKIKNTPNAVTFAKAKLSDMGTMSRDEIIMLAIFAVLLLCWAGV 298
                    ***************77622689**********************************************************************987 PP

  Na_sulph_symp 287 esln....idattvaivvlvillllrvldWkDivkqktaWntllllgglialakllersgliewlgnklttsls..glspavaiiiilslfvlvhy 376
                     +l     i+at++a+++l++lll+ vl+W+D++ +k+aW+t++++++li++a++l+++gli w++ +l t+ +  gls+  a + +l++++++hy
     EGE27508.1 299 PNLLfnfpINATATAFIGLSLLLLSGVLTWEDVTAEKGAWDTIVWFAALIMMATFLNKLGLITWFSSSLETHIAslGLSGLSAGLLLLIAYMYAHY 394
                    74444566***************************************************************998799******************* PP

  Na_sulph_symp 377 lfaSatAttaallpillavaqaipgappllvalllalatslagfllpyatgpnpivfgagylkvkdywrlGfilsiigllillllgalwwklLvll 472
                    +faS tA+++a+   +l+++ a+ g+pp+l+all+a a+s++ +l++yatg +p++fg+gy    ++w++Gf++s+++++++ l+g lwwk+L+ +
     EGE27508.1 395 MFASTTAHITAMFGAFLSAGVAL-GVPPMLFALLMAAASSIMMTLTHYATGTSPVIFGSGYTTLPEWWKAGFVMSVVNIIVFTLIGGLWWKVLGYW 489
                    ***********************.*********************************************************************987 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9  44.3     3e-21   2.7e-17       4     300 .]      49     429 ..      45     430 .. 0.69
   2 ?    0.6  15.3     0.029   2.6e+02      77     156 ..     386     477 ..     379     486 .. 0.81

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 3e-21
                 xxxxxxxxxxxxxxxxxxx...xxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
      CitMHS   4 lileklrldvvallvlvll...vltiee............alsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvlltalls 86 
                 +i +++++ + ++l+++l+      i +            als +a+p+i+l+++ ++i+++l +tGl  r++  ++ ++g+k+  +   l++   +l+
  EGE27508.1  49 IIGKAMPIGALSILAITLVavtG--ITVadggsandamkdALSSFANPLIWLIGVSIMISRGLLKTGLGARIGYIFIAIFGKKTLgVGYSLAFSELILA 145
                 44444444444544444445331..222335556667777*****************************************987766666********* PP

                 xxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................x RF
      CitMHS  87 afvsndgv..vlimipivlslakrlkklppl.........lliplalaaniggaltpiGtpttraaarpglslpnlll....................l 154
                 ++   +++   +im pi+ ++a +  +++p+         +l ++ + +n  ++++ + t t      p++ ++nl++                    +
  EGE27508.1 146 PVTPSNTArgGAIMHPIMRAIADS-FDSSPSkntqdtigkYLALVNYHSNPISSAM-FITAT-----APNPLVVNLIAetlgsefrlswsqwawamliP 237
                 **9998888**************8.6666666****99997666777777666554.44443.....45666666666666666666666666666669 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxx..................................... RF
      CitMHS 155 alllvgllplvllfmfgvalalpvnap.........kvkkqkaiieaiarsllpvatillla..................................... 207
                 +l++ +l+plvl+f+    ++ ++na                    +++r  + + +i++++                                     
  EGE27508.1 238 GLVAFALMPLVLYFVSPPKIKNTPNAVtfakaklsdM--------GTMSRDEIIMLAIFAVLllcwagvpnllfnfpinatatafiglsllllsgvltw 328
                 9999999*******88888888888876544433331........222332222333333334455777777777777777777777777788888999 PP

                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
      CitMHS 208 ....ykkveWsvlllfaGvfllvgaleqtGilealadllga.......ggplvalalvlglial.lsafisnvavaalmapialgmap.algllspspl 293
                      +k  W+++++fa+++++++ l+++G++++++++l++       +g+ +   l+l++  +  + ++ ++++ ++ +++a+  a  alg   + p+
  EGE27508.1 329 edvtAEKGAWDTIVWFAALIMMATFLNKLGLITWFSSSLEThiaslglSGLSA--GLLLLIAYMyAHYMFASTTAHITAMFGAFLSAGvALG---VPPM 422
                 9999***********************************65576432212222..2334444444555555555555555555554443444...8888 PP

                 xxxxxxx RF
      CitMHS 294 alalavg 300
                 ++al+++
  EGE27508.1 423 LFALLMA 429
                 8888775 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.029
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxx RF
      CitMHS  77 llvlltallsafvsndgvvlimipivlslakrlkklppl.lliplalaaniggaltpiGtpttraa.............arpglslpnllllal 156
                 l++ + a   +f+s+++ +  m  ++ls +    + pp+ +++++a a++i+ +lt+  t t +++             a + +s++n+++  l
  EGE27508.1 386 LIAYMYAHY-MFASTTAHITAMFGAFLSAGVA-LGVPPMlFALLMAAASSIMMTLTHYATGTSPVIfgsgyttlpewwkAGFVMSVVNIIVFTL 477
                 455555555.8888888877788888888886.555555599********************9999************9999999999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3566.93
//
Query:       EGE27509.1  [L=31]
Description: hypothetical protein EA1_02572 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       138  (0.00769703); expected 358.6 (0.02)
Passed bias filter:                       74  (0.00412739); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 243.48
//
Query:       EGE27510.1  [L=975]
Description: valyl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.3e-212  705.3   0.2   6.7e-211  701.7   0.2    2.1  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
      8e-40  136.3   0.6    1.4e-39  135.5   0.6    1.4  1  Anticodon_1      Anticodon-binding domain of tRNA
    1.5e-19   70.1   1.6    3.6e-06   26.0   0.0    4.8  4  tRNA-synt_1g     tRNA synthetases class I (M)
    2.5e-17   62.9   4.3    4.9e-17   62.0   4.3    1.5  1  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
    6.8e-11   42.0   0.0    4.8e-09   36.0   0.0    2.4  2  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
  ------ inclusion threshold ------
      0.015   14.6   0.1      0.029   13.7   0.1    1.4  1  tRNA-synt_1b     tRNA synthetases class I (W and Y)
      0.047   13.2   0.0        4.6    6.7   0.0    2.3  2  Tab2_like        RNA-binding protein Tab2/Atab2
      0.076   11.7   0.0       0.12   11.0   0.0    1.2  1  BLM10_mid        Proteasome-substrate-size regulator, mid reg


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  701.7   0.2    3e-214  6.7e-211       1     602 []      18     644 ..      18     644 .. 0.95

  Alignments for each domain:
  == domain 1  score: 701.7 bits;  conditional E-value: 3e-214
  tRNA-synt_1   1 klyekWeeedvfkkele..kekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklg 96 
                  k+y+ We++++fk++ +   +++++ f+++ +PP+vtGslH+Gh +++t++d+++ry+rm G+++l++pG+DhaG+a++++ve++lg ++  +r++lg
   EGE27510.1  18 KWYKIWEQQGYFKPQPNpaMSDKQNAFSIALPPPNVTGSLHMGHGFNNTIMDTLTRYHRMMGHNTLWQPGTDHAGIATQMVVERQLGLQG-ISRHDLG 114
                  69***********9865215566888************************************************************9998.6****** PP

  tRNA-synt_1  97 reefrekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafpl 194
                  re+f++k+++wk+++ ++i++q++rlG svD++re++T+d++l++avkevfvrl+d+gliyrgk+lvnw++kl+tals+lEve  +++++l+h+++++
   EGE27510.1 115 REKFIDKIWAWKEQSGNTITRQIRRLGSSVDWSRERFTMDDGLSQAVKEVFVRLYDEGLIYRGKRLVNWDPKLHTALSDLEVESVEEQGSLWHFRYHF 212
                  ************************************************************************************************** PP

  tRNA-synt_1 195 adkee......vklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelplvnrkipiiaddyvdke 286
                  ad++        +lv+aTT+PeTllgd avav+p+                               der+++L+gk++ lp+ +r++pi+addyv+k+
   EGE27510.1 213 ADQSLttqdgkNYLVVATTRPETLLGDSAVAVHPD-------------------------------DERYAHLIGKTIVLPISGREVPIVADDYVEKD 279
                  554444444446***********************...............................9******************************* PP

  tRNA-synt_1 287 aGtGvVkiaPahdedDyevgkkynlevinildedgtlteea.................aefeglkvfdarkkvveelkekglllkaekiehsvpfcer 367
                  +GtG+Vki+Pahd++D+e+gk+++l++ini ded++++ e                  a+++gl++f+arkk++e+ ++++ l k+e+ +++ p ++r
   EGE27510.1 280 FGTGCVKITPAHDFNDHELGKRHELPLINIFDEDACIKAEFdliakvgepisnhitapADYAGLERFAARKKLIEQAQNENWLEKIEPYTLKAPRGDR 377
                  ************************************************************************************************** PP

  tRNA-synt_1 368 skkpiiyrateqWfvrvkeladaalkave..kvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekk 463
                  s+++i++ +t+qW+v +++la+ a++av+  ++qfvp++++++y+ w+++iqdWciSRq+wWGhrip++++++ ++v+v         gr e+e+++k
   EGE27510.1 378 SGTVIEPLLTDQWYVAIETLAKPAIEAVQngDIQFVPQQYTNMYMAWMRDIQDWCISRQLWWGHRIPAWYDDN-GNVYV---------GRDESEVRAK 465
                  *****************************999***************************************99.55999.........7888888888 PP

  tRNA-synt_1 464 alekeakdklkkekgelekdedvlDvWFsSgswpfstlgypeedt.....eelkkffpadmlleGlDiirgWvarlillslaltgse......Pfkev 550
                  +            +  l++d+dvlD+WFsS++w+fstl++  +++     + l++f+p+++l++G+Dii++Wvar+i++++++++++      Pfk+v
   EGE27510.1 466 YSLA---------DTPLRQDDDVLDTWFSSALWTFSTLDWTGQTSfddygDALQTFHPTSVLVTGFDIIFFWVARMIMMTMHFIKDKdgkpqvPFKTV 554
                  7442.........3359***********************987542222256899******************************99999999***** PP

  tRNA-synt_1 551 lvhglvrdeeGrKmSKslgNvidpldvik.....................................kygadalRltli.lsdvgrdinls 602
                  +vhglvrd++G+KmSKs+gNv+dp+d+i+                                     + g+dalR+t + l+ +grdin++
   EGE27510.1 555 YVHGLVRDSQGQKMSKSKGNVLDPIDLIDgidlenlvnkrtqglmnpkeadniakqtrqefpngipAFGTDALRFTYAsLAGTGRDINFD 644
                  ******************************************************************************99*******986 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.5   0.6   6.2e-43   1.4e-39       2     150 ..     693     848 ..     692     850 .. 0.88

  Alignments for each domain:
  == domain 1  score: 135.5 bits;  conditional E-value: 6.2e-43
  Anticodon_1   2 rwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.....raaq..evllevletllrllaPfmPfitEelwqr. 91 
                   wi+s+ln ++++++e++ +yrf+ + +a+yef+wn++cdwy+e++k+ l+ +++++      + aq  +vll vle  +++ +P+mP++tEe+wq  
   EGE27510.1 693 HWIISRLNATINDIHEHISQYRFDLMSQAIYEFIWNEYCDWYVEFAKSSLNASEQDSTvsderK-AQirYVLLFVLEMAMKMTHPIMPYLTEEIWQTi 789
                  7*************************************************98887777**9633.6666***************************96 PP

  Anticodon_1  92 eeeel.gkkesimlaewpe.kaeelekeleeeevellkeivkairklrselkikpsselkv 150
                     +l +  +siml+ +p+ ++++ ++++ e+++++l++++ a+r++r+e+k++++ +l v
   EGE27510.1 790 T-PLLgKTGKSIMLSTYPKyDDSKINEQA-ESDMAWLQSLIGAVRNIRGEMKLGNAVRLPV 848
                  3.45524569********77666665555.89*********************99877665 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.6e-09   3.6e-06       6     136 ..      49     197 ..      44     200 .. 0.73
   2 !   25.8   0.1   1.9e-09   4.2e-06     150     247 ..     356     455 ..     347     460 .. 0.90
   3 !   10.5   0.0     8e-05      0.18     311     349 ..     550     589 ..     471     593 .. 0.77
   4 ?    1.4   0.0     0.047     1e+02     344     371 ..     621     648 ..     614     662 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.6e-09
                   --B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHH....TTS-H.....HHHHHHH.......HHHHHHHHHHTT---S CS
  tRNA-synt_1g   6 alpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAek....egvtp.....eelvekv.......heeikelfkklnisfd 86 
                   + p ++g+lH+Gh  +  + D ++Ry+r+ g+++l+  gtD+ G+++++  e+    +g++      e++++k+        ++i+++ ++l+ s d
    EGE27510.1  49 PPPNVTGSLHMGHGFNNTIMDTLTRYHRMMGHNTLWQPGTDHAGIATQMVVERqlglQGISRhdlgrEKFIDKIwawkeqsGNTITRQIRRLGSSVD 145
                   456789*********9999**************************9988766422224555411111556665522211113445566666766666 PP

                   EEEE..TTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-E CS
  tRNA-synt_1g  87 kygr..ttseehkelvqeifkklkekgliyekeieqlycpkderflpdryve 136
                      +  t ++  +++v+e+f +l+++gliy+++  + ++pk ++ l+d +ve
    EGE27510.1 146 WSRErfTMDDGLSQAVKEVFVRLYDEGLIYRGKRLVNWDPKLHTALSDLEVE 197
                   4332237888889999*****************9999999999999998886 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 1.9e-09
                   -EE-TTSSB-E................EEE.EEEEEE-GGGGHHHHHHHH.HH-TT.SHHHHHHHH.HHHHT----EE-ESS-SSS-EET..TECCE CS
  tRNA-synt_1g 150 dqceecgkkleptelinpksaisgskpevketehlffklskfekklkewieeeeke.leenvkkivkewlkegLkdlaisrdldwGipvP..gaekk 243
                    q e+  +k+ep +l+ p+   sg+  e   t++++  ++ ++k   e +++ + +  +++ +++  +w+++ ++d++isr+l wG ++P   +++ 
    EGE27510.1 356 AQNENWLEKIEPYTLKAPRGDRSGTVIEPLLTDQWYVAIETLAKPAIEAVQNGDIQfVPQQYTNMYMAWMRD-IQDWCISRQLWWGHRIPawYDDNG 451
                   566778899******************9999*************99999988887899************99.*****************9877788 PP

                   EE-H CS
  tRNA-synt_1g 244 vlYV 247
                    +YV
    EGE27510.1 452 NVYV 455
                   8888 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 8e-05
                   --S-EEEE--EE.E--------------HHHHHHHH-HHH CS
  tRNA-synt_1g 311 lpkkvvaheylt.vegkKlSkSrgvvvkakealerldadl 349
                     k+v++h+ +   +g+K+SkS+g+v ++ ++++ +d + 
    EGE27510.1 550 PFKTVYVHGLVRdSQGQKMSKSKGNVLDPIDLIDGIDLEN 589
                   457899999986379*****************99998876 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.047
                   HH-HHHHHHHHHHHS-TTS-EEE-HHHH CS
  tRNA-synt_1g 344 rldadllRYylaaeapekkDldfswedf 371
                    + +d+lR+ +a+ a + +D++f ++ +
    EGE27510.1 621 AFGTDALRFTYASLAGTGRDINFDLKRI 648
                   5889*******************99876 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   4.3   2.2e-20   4.9e-17       1      65 [.     908     972 ..     908     973 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 2.2e-20
  Val_tRNA-synt_C   1 DvekeraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklkerLskL 65 
                      D ++e +RL+K  +kl+++++ ++kKL+n +F++KAPa+VVe+e+akl el+ q + ++++   L
       EGE27510.1 908 DPTAELNRLNKVRDKLQTQADAINKKLSNDNFIAKAPAQVVEAERAKLSELQGQLAEVEKQVGAL 972
                      7899*******************************************************997665 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.016        35      16      46 ..     219     249 ..     209     257 .. 0.83
   2 !   36.0   0.0   2.2e-12   4.8e-09      86     150 ..     256     321 ..     247     357 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.016
  tRNA-synt_1_2  16 veeseeklevfttrpdtlfGvtfvalapehp 46 
                     ++ ++ l v ttrp+tl G + va+ p+ +
     EGE27510.1 219 TQDGKNYLVVATTRPETLLGDSAVAVHPDDE 249
                    4555678999**************9998865 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 2.2e-12
  tRNA-synt_1_2  86 glkaihPitgekipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikpedee.kkle 150
                    g +++ Pi+g+++pi   +yv  ++gtg+v   Pahd +D+e  k+++lp++++  ++    ++++
     EGE27510.1 256 GKTIVLPISGREVPIVADDYVEKDFGTGCVKITPAHDFNDHELGKRHELPLINIFDEDACIkAEFD 321
                    778999**********************************************99885443334444 PP

>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.3e-05     0.029     164     227 ..     533     600 ..     531     617 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                   HHHHHHHHHHHHHHSTTSS-EEEEET.-BBSTTSSSBTTCETTC..GC-BTTC...CHHHHHHHHHHCHC CS
  tRNA-synt_1b 164 ielgrdlarrfnkkevfkkpegltvp.lltgldGekKmSKSagn..saIfLdd...ekesvkkkiqkavt 227
                   i ++ + +++   k    + ++++v+ l+ +++G+ KmSKS+gn    I+L d    ++ v+k  q  ++
    EGE27510.1 533 IMMTMHFIKDKDGKPQ-VPFKTVYVHgLVRDSQGQ-KMSKSKGNvlDPIDLIDgidLENLVNKRTQGLMN 600
                   5566666666666622.222333444699999999.********88666665411145555555555555 PP

>> Tab2_like  RNA-binding protein Tab2/Atab2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.014        30      60     106 ..     120     166 ..     102     193 .. 0.90
   2 ?    6.7   0.0     0.002       4.6     191     224 ..     360     394 ..     354     409 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.014
   Tab2_like  60 ekirvFRpqmlnlitkaceelgikvepsrrtlaLkqwleereeevYp 106
                 +ki  +++q+ n it+ +++lg +v  sr  +++ + l++  +ev+ 
  EGE27510.1 120 DKIWAWKEQSGNTITRQIRRLGSSVDWSRERFTMDDGLSQAVKEVFV 166
                 78999**********************************99999874 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.002
   Tab2_like 191 awlsglepvalkl.egekagLiLeaglsdrwilat 224
                 +wl+++ep++lk+ +g+++g ++e  l+d+w +a 
  EGE27510.1 360 NWLEKIEPYTLKApRGDRSGTVIEPLLTDQWYVAI 394
                 6******************************9963 PP

>> BLM10_mid  Proteasome-substrate-size regulator, mid region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.3e-05      0.12     268     314 ..     691     737 ..     677     756 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.3e-05
   BLM10_mid 268 lEesvvnklpatldilleslsdelfdlalkkvvdfvsnnvksnavda 314
                 +E+ +++ l+at++ + e++s+  fdl+++ +++f++n+  +  v+ 
  EGE27510.1 691 PEHWIISRLNATINDIHEHISQYRFDLMSQAIYEFIWNEYCDWYVEF 737
                 78899*********************************966655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (975 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.53
# Mc/sec: 5514.65
//
Query:       EGE27511.1  [L=72]
Description: modification methylase MboIA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-19   68.5   0.0    7.8e-19   68.4   0.0    1.0  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   4.3e-23   7.8e-19       1      58 [.       7      70 ..       7      72 .] 0.98

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 4.3e-23
                     STTTSCTTHHHHHCCS-.....--SEEEETT-TTSCCHHCS......SSCEEEEES-HHHHHHH CS
  MethyltransfD12  1 YiGgKrkllpeIkelipkd...kgktfvepFaGggaVffeakk...qgkkvlinDinedlinly 58
                     ++GgK++ll+ I++ +p+    ++ ++vepF+GggaV++++++   + k+ +inD+n+dlin+y
       EGE27511.1  7 WAGGKNSLLDKIQKRLPDFvysQDFCLVEPFVGGGAVSLWVLSdlpHLKQLIINDYNADLINVY 70
                     9****************99*******************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 546.34
//
Query:       EGE27512.1  [L=259]
Description: putative type II restriction endonuclease DpnI [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-86  287.0   1.8      7e-86  286.5   1.8    1.2  1  DpnI            Dam-replacing family
    1.9e-36  124.0   2.1    1.9e-36  124.0   2.1    2.3  2  DpnI_C          Dam-replacing HTH domain
  ------ inclusion threshold ------
      0.011   15.0   1.0       0.02   14.2   1.0    1.5  1  zf-TFIIB        Transcription factor zinc-finger
      0.011   15.8   0.0      0.021   15.0   0.0    1.5  1  Auto_anti-p27   Sjogren's syndrome/scleroderma autoantigen 1 
      0.024   14.7   0.4          4    7.6   0.1    2.4  2  Zn-ribbon_8     Zinc ribbon domain
       0.14   12.1   0.2       0.25   11.3   0.2    1.4  1  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
       0.15   11.5   0.2       0.15   11.5   0.2    1.7  2  zf-ribbon_3     zinc-ribbon domain
       0.42   10.4   3.4       0.98    9.2   0.3    2.4  2  zinc_ribbon_2   zinc-ribbon domain
       0.42   10.5   4.5       0.87    9.5   4.5    1.6  1  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit


Domain annotation for each model (and alignments):
>> DpnI  Dam-replacing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.5   1.8   3.5e-89     7e-86       1     181 [.       1     180 [.       1     181 [. 0.99

  Alignments for each domain:
  == domain 1  score: 286.5 bits;  conditional E-value: 3.5e-89
                 ---B--HHHHHHTTT-TTHHHHHHHHHHHHH---TTT--SS-EE--------EEE-TTT--EEEEEEEESS--SEEEEEEHHHHHHHHHTT---EEEEE CS
        DpnI   1 lnlkfdkklakeyksksqkaRvltEkWvaknlyCpkCgskklsefennkpvaDfyCesckeefeLkskksklskkivdgaystmierikseknPnlfll 99 
                 +nl+fdk+la+ey+sk+q+aRvltE+Wv +n+yCpkCg+ +lsefenn+pvaDfyC++c eefeLksk+++l++ i+dgay+tmieri+++++Pn+f+l
  EGE27512.1   1 MNLYFDKNLANEYSSKAQIARVLTENWVLNNSYCPKCGNLPLSEFENNRPVADFYCQNCLEEFELKSKNGRLPNVITDGAYATMIERINANNSPNFFFL 99 
                 9************************************************************************************************** PP

                 EE-T.TSBEEEEEEE-GGG--GGGEEEEEEE--------EEEEEEEGGGS-GGG-EEEEETTEE--HHHHHHHHHHGGGGGG CS
        DpnI 100 tYkkkelevenlllipklfftpeiiekRkpLsetarRagwigcnidlskipesgkiflikdskviekeevlekykktlflre 181
                 tY+k +++v+++l+ipk+fftp+ii+kRkpLs++arRagw+gcnid+s++ + gkifl+k+s++i+++ v+e++++tlf+r+
  EGE27512.1 100 TYDK-QWRVNDFLIIPKQFFTPSIIIKRKPLSPNARRAGWVGCNIDISNVVDFGKIFLVKNSQIINQNLVQEHFNNTLFIRT 180
                 ***7.***************************************************************************97 PP

>> DpnI_C  Dam-replacing HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.51     1e+03       8      46 ..     144     181 ..     135     182 .. 0.63
   2 !  124.0   2.1   9.4e-40   1.9e-36       1      70 []     184     253 ..     184     253 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.51
                 HHHHHHHHS-SSEEEHHHHHTTHHHHHHHSTT-S.-HHHH CS
      DpnI_C   8 dilkcidklekkeFtlediykfeeeLkekhpkNn.fikdK 46 
                 di +++d    k F  ++    +++L ++h +N+ fi+ K
  EGE27512.1 144 DISNVVDFG--KIFLVKNSQIINQNLVQEHFNNTlFIRTK 181
                 556666543..35666555566778888888886477766 PP

  == domain 2  score: 124.0 bits;  conditional E-value: 9.4e-40
                 HHHHHHHHHHHHHHHS-SSEEEHHHHHTTHHHHHHHSTT-S-HHHHHHHHHHHHHHTTSEEE-STTEEEE CS
      DpnI_C   1 esrgWlldilkcidklekkeFtlediykfeeeLkekhpkNnfikdKirqqLqvlRDkglieFlgrGkYkk 70 
                 esrgW+ldi++cid+++k++F+l+diy+fee Lk+k+p+NnfikdKirqqLq+lRDkglieF++rG+Ykk
  EGE27512.1 184 ESRGWILDIMMCIDSISKDTFNLKDIYDFEEILKIKYPNNNFIKDKIRQQLQILRDKGLIEFVARGRYKK 253
                 69*******************************************************************8 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.0     1e-05      0.02       1      25 [.      33      59 ..      33      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1e-05
    zf-TFIIB  1 kCPkCqd.eleesergg.veidyCpqC 25
                +CPkC++ +l e+e +  v  +yC +C
  EGE27512.1 33 YCPKCGNlPLSEFENNRpVADFYCQNC 59
                7******9*******666********* PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0     1e-05     0.021       3      39 ..      19      59 ..      17      60 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-05
  Auto_anti-p27  3 mgelLlkGwtMLaetCpvC.gvPLmrdr...kggkvyCvaC 39
                   +++ L   w + +++Cp+C + PL +        + yC +C
     EGE27512.1 19 IARVLTENWVLNNSYCPKCgNLPLSEFEnnrPVADFYCQNC 59
                   77888888****************88776564578999998 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.015        30      27      36 ..      32      42 ..      25      44 .. 0.78
   2 ?    7.6   0.1     0.002         4       5      19 ..      53      67 ..      50      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.015
  Zn-ribbon_8 27 taCPeCgs.ev 36
                   CP+Cg  ++
   EGE27512.1 32 SYCPKCGNlPL 42
                 45****98665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.002
  Zn-ribbon_8  5 eYrCeeCghefevlq 19
                 ++ C++C +efe   
   EGE27512.1 53 DFYCQNCLEEFELKS 67
                 899*********644 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00013      0.25      11      43 ..      25      59 ..      16      62 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
  Zn_Tnp_IS1595 11 ealrWpngfvCPhCgsrkayrikt...rglfqCkeC 43
                   e+++ +n   CP+Cg+  + ++++      f C+ C
     EGE27512.1 25 ENWVLNNSY-CPKCGNLPLSEFENnrpVADFYCQNC 59
                   445555555.*******888888878899999*999 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   7.5e-05      0.15       4      14 ..      33      44 ..      31      48 .. 0.85
   2 ?   -4.7   1.6         9   1.8e+04      19      22 ..      56      59 ..      55      59 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.5e-05
  zf-ribbon_3  4 rCPnCGa.plss 14
                 +CP+CG+ pls+
   EGE27512.1 33 YCPKCGNlPLSE 44
                 8******99986 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 9
  zf-ribbon_3 19 CpyC 22
                 C +C
   EGE27512.1 56 CQNC 59
                 4444 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.3   0.00049      0.98      13      20 ..      31      38 ..      26      39 .. 0.71
   2 ?    1.3   0.3      0.15     3e+02      15      19 ..      54      59 ..      46      63 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00049
  zinc_ribbon_2 13 akFCpyCG 20
                   + +Cp+CG
     EGE27512.1 31 NSYCPKCG 38
                   56777776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.15
  zinc_ribbon_2 15 F.CpyC 19
                   F C +C
     EGE27512.1 54 FyCQNC 59
                   447776 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.5   0.00044      0.87       3      33 ..      33      65 ..      32      68 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00044
                    BESTTTSBEEEEECSCCCE..EEESSSS-EEES CS
  RNA_POL_M_15KD  3 FCpkCgNlLlpkedkegkn..feCrqCgYeepa 33
                     CpkCgNl l+       +  f C +C  e++ 
      EGE27512.1 33 YCPKCGNLPLSEFENNRPVadFYCQNCLEEFEL 65
                    6******9877766666557999****888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1788.59
//
Query:       EGE27513.1  [L=56]
Description: hypothetical protein EA1_02592 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-20   71.9   0.7    3.4e-20   71.6   0.7    1.1  1  DpnD-PcfM  DpnD/PcfM-like protein
  ------ inclusion threshold ------
      0.012   15.7   0.1      0.013   15.6   0.1    1.0  1  SIS_2      SIS domain
      0.049   13.9   0.4      0.066   13.5   0.4    1.2  1  DUF5601    Domain of unknown function (DUF5601)


Domain annotation for each model (and alignments):
>> DpnD-PcfM  DpnD/PcfM-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.7   5.7e-24   3.4e-20       1      46 []       4      49 ..       4      49 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 5.7e-24
   DpnD-PcfM  1 YkVeItEtLsrvVeVeAeseeeAerlVeekYkneeiVLdaddfkgv 46
                Yk++ +EtLs+++e++A++++eA+r+V+e+Y+ne+iVLd+ df+ v
  EGE27513.1  4 YKIQLQETLSKIIEIQASNIDEAIRIVQESYQNEDIVLDWGDFVLV 49
                9******************************************966 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.1   2.1e-06     0.013       2      42 ..       4      44 ..       3      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.1e-06
                HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEE CS
       SIS_2  2 YlaevteilerivetqaeaiekaaeliadslenggkvlvfG 42
                Y  +++e+l++i+e qa++i++a++++ +s +n+ +vl  G
  EGE27513.1  4 YKIQLQETLSKIIEIQASNIDEAIRIVQESYQNEDIVLDWG 44
                667899****************************9998655 PP

>> DUF5601  Domain of unknown function (DUF5601)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   1.1e-05     0.066       3      30 ..       8      36 ..       6      39 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
     DUF5601  3 iksfvrki.sqrsisieelSemVqdFyqn 30
                +++ ++ki +++ ++i+e+  +Vq+ yqn
  EGE27513.1  8 LQETLSKIiEIQASNIDEAIRIVQESYQN 36
                566677774678****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 435.15
//
Query:       EGE27514.1  [L=112]
Description: modification methylase MboIB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-27   96.0   0.0    3.2e-27   95.8   0.0    1.1  1  N6_N4_Mtase      DNA methylase
    1.5e-05   24.8   0.0    2.1e-05   24.3   0.0    1.2  1  UPF0020          Putative RNA methylase family UPF0020
  ------ inclusion threshold ------
      0.025   14.4   0.0       0.03   14.1   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
      0.088   12.4   0.0       0.11   12.1   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   7.1e-31   3.2e-27     143     230 ..       5      87 ..       1      88 [. 0.93

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 7.1e-31
                  CC-B--BSEEE-SCCCTTSTTS-CHH----SS---HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH CS
  N6_N4_Mtase 143 kkgkkiediWdlseiqsnekkskgdtkkkHpaqkPvallerlIklstkkgdivlDpFaGSGtTavaakelgrkfiGieieeeyvelae 230
                  + +k+ +d+W+l+ + s ek +      kHp+qkP+ ll r+I++st+kgd++lDpF GSGtT++aa  lgr+fiGi++e e++el++
   EGE27514.1   5 NGDKQAKDVWRLPAVGSWEKTQG-----KHPTQKPLGLLSRIILSSTQKGDLILDPFSGSGTTGIAATILGRQFIGIDKELEFLELSK 87 
                  568999****9999999999976.....5*******************************************************9987 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.6e-09   2.1e-05      23      65 ..      43      97 ..      38     112 .] 0.72

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.6e-09
                HTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS............H CS
     UPF0020 23 lagwkpgepllDPmCGsGtilIEaallganiapgllrefvle............l 65
                l+  ++g+ +lDP++GsGt  I a +lg++ + +    ++le             
  EGE27514.1 43 LSSTQKGDLILDPFSGSGTTGIAATILGRQFIGIDKELEFLElskrryqaitpkS 97
                7899**************************9955444444446555555555443 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.7e-06      0.03       3      60 ..      48     103 ..      46     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.7e-06
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeq 60 
                      kg  +lD+ +G+G+ ++++   lg   +++GiD + e +el++ + q    +  +eF+q
       EGE27514.1  48 KGDLILDPFSGSGTTGIAAT-ILG--RQFIGIDKELEFLELSKRRYQAITPKsKYEFKQ 103
                      66679************999.555..59****************998777666777766 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.4e-05      0.11       3      41 ..      51      89 ..      49     106 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
  Methyltransf_15  3 vilDlfsGaGGnviqfalvfekviaieinleklacaqhN 41
                     +ilD+fsG+G   i+    +++ i+i+++le l+++++ 
       EGE27514.1 51 LILDPFSGSGTTGIAATILGRQFIGIDKELEFLELSKRR 89
                     79****************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 846.49
//
Query:       EGE27515.1  [L=301]
Description: histone deacetylase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-46  157.9   0.5    1.2e-45  156.4   0.5    1.6  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.5   6.4e-50   1.2e-45       8     294 ..      25     280 ..      17     292 .. 0.86

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 6.4e-50
                    HHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   8 lsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavgavleavd 103
                    ++ i ++l    g++++   l++p+ ++++e+l  H+ +Y ++l++ +  l +ke       ++i         p+s +++k  ++ + a+ e++ 
     EGE27515.1  25 YDLIPKKLLTD-GIITQDN-LFHPELLSEQEILSTHTADYWHKLKTGT--LTDKE------IRKIG-------LPMSASLIKRERYITHATYECAL 103
                    44444445544.4454433.699*********************9755..33443......33333.......89*****************9976 PP

                    HHHTTSSSEEEETT.SS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTSTTSS--TT- CS
                    xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 104 avlsgsvkaafvlv.rPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryegifyPgtgaled 198
                           k ++ l   ++ HH  a++ +GFC++N+v++a + l a+ ++kr++ +D+DvH+GnG+ +++ ++p v+++S+H   ++ yP     +d
     EGE27515.1 104 YAK----KYGISLSvSGGTHHGFADHGEGFCVFNDVCVASNLLLARGQAKRILSVDLDVHQGNGNASIMANNPAVFVFSMHG--KKNYPFIKPPSD 193
                    666....557777669*****************************999**********************************..677**9988888 PP

                    --SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-G..EEEEE-S---H CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Hist_deacetyl 199 lgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkvk.kvvllleGGYnl 293
                    l           ++l++gt+d+ yl+++ + l +++++f+Pd++ ++aG+D l++d+lg+l+ls +g +e  k ++ +a+k + +v ++++GGY++
     EGE27515.1 194 L----------DIELDDGTDDNAYLTILGKTLPKIIHNFDPDMLFYQAGVDVLATDKLGKLSLSLQGCYERDKLVLITAHKAGiPVAVVMGGGYSP 279
                    8..........7*******************************************************************99955**********99 PP

                    H CS
                    x RF
  Hist_deacetyl 294 e 294
                    +
     EGE27515.1 280 D 280
                    5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2219.81
//
Query:       EGE27516.1  [L=241]
Description: hypothetical protein EA1_02607 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-05   24.7   0.0    3.4e-05   23.9   0.0    1.4  1  YbjN      Putative bacterial sensory transduction regulator
  ------ inclusion threshold ------
      0.097   12.5   0.0       0.32   10.9   0.0    2.0  1  UBA_4     UBA-like domain


Domain annotation for each model (and alignments):
>> YbjN  Putative bacterial sensory transduction regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   3.8e-09   3.4e-05       3     115 ..      69     191 ..      68     199 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 3.8e-09
                 HHHHHHHHHH--S-EEEEETTEE.......EEEEEETTEEEEEEE--SSTT-EE.EEEEEEES-.-TTHHHHHHHHHHHTTTTTTT-EEE.EETTEEEE CS
        YbjN   3 dlleevLeeagleyertedddga......ivvvgtwggyrftiallgeseelll.vlafvarvp.eedreallellnrwNrellfgkayl.dedgdvlv 92 
                 d + ++L+++g++ye + +d+         ++ +++  y+   +++  ++  l  ++++  +v  ++ ++++l+++ ++N +  fg+  l  +dg+v +
  EGE27516.1  69 DHIIQYLKRHGWQYEARSNDGTItpqihhLIILFSYTKYQWSCVFRINETSQLVsIFGILPEVVpDSHFAMMLMAIAKANLSIPFGSIELdPTDGEVHA 167
                 67999***********9999999999999889999998887777766444333346666666667*************************666666656 PP

                 EEEEE-..TT--HHHHHHHHHHHH CS
        YbjN  93 ehdldl.dagltpeqldrllalvl 115
                   +ld     l+++ l  +l+ v+
  EGE27516.1 168 KVSLDAeFTPLSDNALGVYLQGVV 191
                 666655555556666666666555 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.5e-05      0.32       8      30 ..      54      83 ..      54      84 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
       UBA_4  8 qaiT.Gade......ekArqlLeannWdLe 30
                q+iT  +++      + ++q+L++++W  e
  EGE27516.1 54 QSITeHQSDtkqpitDHIIQYLKRHGWQYE 83
                56775555557777799**********877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      713  (0.039768); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1885.94
//
Query:       EGE27517.1  [L=252]
Description: heme ABC transporter ATPase subunit CcmA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-15   57.4   0.0    5.2e-15   56.2   0.0    1.6  1  ABC_tran  ABC transporter
    1.1e-05   25.4   0.4       0.05   13.4   0.0    2.1  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    3.3e-05   23.4   0.1     0.0056   16.1   0.0    2.2  2  SMC_N     RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.012   15.5   0.6      0.031   14.2   0.1    1.8  2  NACHT     NACHT domain
      0.021   14.5   0.0      0.055   13.2   0.0    1.7  1  AAA_29    P-loop containing region of AAA domain
      0.028   13.6   0.0      0.042   13.0   0.0    1.2  1  NB-ARC    NB-ARC domain
      0.083   12.5   0.2       0.35   10.4   0.0    1.9  2  AAA_25    AAA domain
       0.16   12.0   0.1       0.33   10.9   0.1    1.5  1  TsaE      Threonylcarbamoyl adenosine biosynthesis protein Ts


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   2.3e-18   5.2e-15       2     136 ..      74     205 ..      73     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 2.3e-18
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdeeiekal 89 
                 ++v+l+l+ g +  ++GenG GK+tL++ +agll    G+              +    + +++++  +   ltv++n           ++d  i++al
  EGE27517.1  74 QEVQLTLEMGDVCHLIGENGLGKTTLMSQIAGLLPIIHGTC-------------VCAGAMVYVSHQLGISAALTVAQNlrfllslygvdADDTLIDEAL 159
                 6899************************************9.............7788899999999999999999999999999988777777***** PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHH...HTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarall...kkpkllllDEpt 136
                  ++gl++l+d        +LS Gq +rv lar+++   ++++++llDEp 
  EGE27517.1 160 WQVGLEGLQDISS----VQLSAGQMRRVGLARLFVltpNEASFWLLDEPL 205
                 *******888777....9***************994445667*******6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.2   0.00021      0.47       4      23 ..      88     107 ..      87     142 .. 0.87
   2 !   13.4   0.0   2.2e-05      0.05     218     298 ..     156     236 ..     133     238 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
      AAA_21   4 liGpNgsGKSnLLdaldlla 23 
                 liG Ng GK++L+  + +l 
  EGE27517.1  88 LIGENGLGKTTLMSQIAGLL 107
                 8************9888884 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.2e-05
      AAA_21 218 ergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 ++ ++++  ++ q++++ +lS G+ r  +l+ ++  ++ ++s+ l+DEp + L+  ++ rl   + + ++ g+ v++t+H+
  EGE27517.1 156 DEALWQVGLEGLQDISSVQLSAGQMRRVGLARLFVLTPNEASFWLLDEPLTALDTTMVQRLEACILAFAKAGGAVLMTSHQ 236
                 337888888999***********99999***************************999999988877777799*******8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0049        11      26      44 ..      85     103 ..      69     115 .. 0.83
   2 !   16.1   0.0   2.5e-06    0.0056     130     200 ..     168     238 ..     124     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0049
                 EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAi 44 
                 +  ++G+NG GK+ l+  i
  EGE27517.1  85 VCHLIGENGLGKTTLMSQI 103
                 5679***********9877 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.5e-06
                 TT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
       SMC_N 130 agiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislree 200
                 ++is+ +LS G+   v la lf +   + a+++llDe   aLD + v+++   + +  k    ++++s++++
  EGE27517.1 168 QDISSVQLSAGQMRRVGLARLFVLT-PNEASFWLLDEPLTALDTTMVQRLEACILAFAKAgGAVLMTSHQAT 238
                 5677889************999665.67899*******************9998877766466677777655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.87   1.9e+03      73      94 ..       8      44 ..       7      63 .. 0.71
   2 ?   14.2   0.1   1.4e-05     0.031       2      23 ..      85     106 ..      84     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.87
                HHHHCCSCCCEE...............EEEE-STT-S CS
       NACHT 73 wavllelperlL...............lilDglDelv 94
                w ++++l++r++               +i+D    + 
  EGE27517.1  8 WRFIIALFDRVVvklgvnlyttvkpiiFIIDTNHAMT 44
                6677777777777777777777777779999765555 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.4e-05
                 CEEEEC-TTTCHHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklala 23 
                 ++ l Ge+G GKTtL+ ++a +
  EGE27517.1  85 VCHLIGENGLGKTTLMSQIAGL 106
                 67899*************9865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.5e-05     0.055      15      42 ..      76     103 ..      69     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAi 42 
                  ++++++ +++ l+G++G GK+Tl+  i
  EGE27517.1  76 VQLTLEMGDVCHLIGENGLGKTTLMSQI 103
                 56778877799*************9544 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.9e-05     0.042      21      66 ..      84     130 ..      73     144 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
                 EEEEEEESTTSSHHHHHHHHCCSHCCCCC.CBTEEEEEEEESXXHHH CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnksdeveg.rFdsvawvvvsktdkse 66 
                 +v  l G  G+GKttl++qi   +  ++g +    a v vs++  ++
  EGE27517.1  84 DVCHLIGENGLGKTTLMSQIAGLLPIIHGtCVCAGAMVYVSHQLGIS 130
                 57789***************988777777444566777777776665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00016      0.35      29      54 ..      79     104 ..      74     107 .. 0.90
   2 ?   -1.0   0.0       0.5   1.1e+03     166     189 ..     214     236 ..     203     242 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00016
      AAA_25  29 llpagelallaGapgtGKttlaldla 54 
                  l +g+++ l+G  g GKttl +++a
  EGE27517.1  79 TLEMGDVCHLIGENGLGKTTLMSQIA 104
                 57899*****************9987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.5
      AAA_25 166 galvealeriarrtgaavllvhHv 189
                 ++l +++  +a++ g avl++ H 
  EGE27517.1 214 QRLEACILAFAKA-GGAVLMTSHQ 236
                 5555666667555.5555555553 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00015      0.33      18      41 ..      80     105 ..      70     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
                 H..TEEEEEEESTTSSHHHHHHHHHH CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglak 41 
                 l  gdv +L G+ G GKTtl+ ++a 
  EGE27517.1  80 LemGDVCHLIGENGLGKTTLMSQIAG 105
                 234899***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2021.62
//
Query:       EGE27518.1  [L=224]
Description: heme ABC transporter permease protein CcmB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-42  145.2  28.0    2.1e-42  145.1  28.0    1.0  1  CcmB             CcmB protein
    0.00049   19.6  16.8    0.00049   19.6  16.8    1.4  2  ABC2_membrane    ABC-2 type transporter
  ------ inclusion threshold ------
        1.5    8.9   7.0       0.48   10.5   0.4    2.6  2  DUF5389          Family of unknown function (DUF5389)
        7.2    5.6  23.9          1    8.4  18.3    2.0  2  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> CcmB  CcmB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1  28.0   4.7e-46   2.1e-42       2     214 ..       7     219 ..       6     220 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.1 bits;  conditional E-value: 4.7e-46
        CcmB   2 lalllrdlrlalRakgelllgllFfllvvtllplavGPdtallsriapgilWvaallaslLsldrlfaadfedGsLellllapvplellvlaKalAhwl 100
                 l++++r+ +++   + + l +l+ fll++tl+pla+G +++ll r+ap+ +W+aalla ++++d lf+++f++G+L ++++a+ pl + vla+ l hwl
  EGE27518.1   7 LTMITREWQIKRQGTVQWLYPLVLFLLIITLFPLAIGNEPKLLLRLAPSAVWIAALLALVIGVDDLFRSEFDNGTLAQMVVAKSPLIIWVLARLLVHWL 105
                 67899*****9999999********************************************************************************** PP

        CcmB 101 ltglplvllapllalllnleaaalgllaltLllGtpalsllgavgaAltvgLkrgglLlslLvlPliiPvlifaveaveaaaegldveaalalllaltv 199
                 ++     +l+ l+ +l+++++   g+l++++ +G+p l  l+a+ + lt +Lk+g +L++l++lP+ +Pvlifa+ av++ a++l+  ++lall+a ++
  EGE27518.1 106 FSAGVVAILSLLVIVLFEMPFGEAGILMVSIFVGSPILLGLSAIASSLTLTLKNGAVLVPLIALPMQLPVLIFATGAVDLYATELNGLPTLALLAAGSI 204
                 *9999999******************************************************************************************* PP

        CcmB 200 vtlvlapfAaaaalr 214
                 +t++++p  +a  l+
  EGE27518.1 205 ITVLVTPWVVASVLK 219
                 ********9998886 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6  16.8   1.1e-07   0.00049       4     174 ..       7     173 ..       5     180 .. 0.80
   2 ?   -3.4   0.2       1.1   5.1e+03     161     175 ..     201     215 ..     195     217 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-07
  ABC2_membrane   4 kallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnr..pgllffsvlflafsaltsvapvferergvlerelvsplyslsayv 97 
                    ++++ re++   + +++  l +l+  ll++++f +++g   n+ + l r  p ++ +++l   ++++  + + +e ++g+l+++ v++  +l   v
     EGE27518.1   7 LTMITREWQIKRQGTVQW-LYPLVLFLLIITLFPLAIG---NEPKLLLRlaPSAVWIAALLALVIGVDDL-FRSEFDNGTLAQMVVAKS-PLIIWV 96 
                    567777776666666555.4455555555555555555...33344433687777666666665556666.******************.****** PP

  ABC2_membrane  98 lakvlvelpvsllqalifllivyflvgldlsrfflflllllltalaasslgllisalapsfedasqlaslvllplll 174
                    la++lv+ ++s+ +++i++l+v++l+ ++    +++++ +++ + ++++l+ + s+l+ +++++++l++l+ lp+ l
     EGE27518.1  97 LARLLVHWLFSAGVVAILSLLVIVLFEMPFGEAGILMVSIFVGSPILLGLSAIASSLTLTLKNGAVLVPLIALPMQL 173
                    *************************999996448889*************************************976 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.1
  ABC2_membrane 161 asqlaslvllpllll 175
                    a+ +++++++p+++ 
     EGE27518.1 201 AGSIITVLVTPWVVA 215
                    666777777777665 PP

>> DUF5389  Family of unknown function (DUF5389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00011      0.48      47      98 ..      15      66 ..       9      72 .. 0.83
   2 ?    1.1   1.0     0.092   4.1e+02      21      35 ..      89     103 ..      73     140 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
     DUF5389 47 qvklmsiflwlyPlvlaiiarilyklnqrkaklakklllisavifygvllyv 98
                q+k    + wlyPlvl+++   l+ l   ++++    l+ sav   ++l  v
  EGE27518.1 15 QIKRQGTVQWLYPLVLFLLIITLFPLAIGNEPKLLLRLAPSAVWIAALLALV 66
                666677899******************9999999999999999887777665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.092
     DUF5389  21 clPvllwPlallisp 35 
                  +P+++w la l+  
  EGE27518.1  89 KSPLIIWVLARLLVH 103
                 345555555555444 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.8     0.089     4e+02     274     292 ..      27      42 ..      13      74 .. 0.48
   2 ?    8.4  18.3   0.00023         1     186     287 ..      76     178 ..      52     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.089
  ABC2_membrane_3 274 fivilllsgffgglfpled 292
                      ++v++   ++++ lfpl  
       EGE27518.1  27 PLVLF---LLIITLFPLAI 42 
                      23322...22222333222 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00023
  ABC2_membrane_3 186 Ekesrikelqlvsgvsplqyw.lskilgdflvyllqlllill..l.afglgipfgnlglllllfllfglayialgyllsslfknsetaqilifi 275
                      E  ++++ +++v+  spl +w l+++l  +l ++ +++++ l  + +f   +pfg+ g+l++ +++++ +++ l++  ssl+ + +++ +l+++
       EGE27518.1  76 EFDNGTLAQMVVA-KSPLIIWvLARLLVHWLFSAGVVAILSLlvIvLFE--MPFGEAGILMVSIFVGSPILLGLSAIASSLTLTLKNGAVLVPL 166
                      6678888899999.77777663577776666665444444331245677..***************************************9999 PP

  ABC2_membrane_3 276 villlsgffggl 287
                      + l++ + ++++
       EGE27518.1 167 IALPMQLPVLIF 178
                      999444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1697.58
//
Query:       EGE27519.1  [L=284]
Description: carbon-nitrogen hydrolase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-40  136.5   0.1    1.1e-39  136.4   0.1    1.0  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   0.1   6.1e-44   1.1e-39       1     253 [.       4     265 ..       4     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 6.1e-44
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEEC......CTTE CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavviglierel......tngk 91 
                   r+A +Ql++ ++d++anl+ + ++i+eAa  +a+ ivlPE + + +    +  ++A+    e+ ++++ la+++g+++ +g+++  +       +++
    EGE27519.1   4 RIATIQLNS-QTDIDANLGIINNAISEAAACDAKFIVLPENACVMG----RQSQLAT-RYDEICQFYQSLAKTYGVHLLAGTLPCPTrpdgsdVPCD 94 
                   79*******.79********************************98....3344455.4558*******************7666556667666666 PP

                   EEEEEEEEEEETTSEEEEEEE-SS--E.ECTTS.CECCGHHTSCS-SS....S-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH.GCCC CS
  CN_hydrolase  92 lqayntavlldldgklvgkyrKlhLfp.geprp.ptaverelfepgdg....ipvfdtpvgkiGaaiCyeigfpellralalkgaeilvnlserapv 182
                   l      +l+d++g++ ++y+K+hLf+ ++ ++ + + e ++fe g +      v+  + +++G++iC + +fp ++  l+++ga+i++     a +
    EGE27519.1  95 L-VRQVSLLIDDQGNIKARYDKIHLFRaTIDDStGNYDEGKTFEHGSRlvcePCVIHGQTINVGMMICFDVRFPAFAQRLRQMGADIITV-P--AAF 187
                   6.34455789****************77766651567788999998877764456688888***************************88.3..789 PP

                   TCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEE..HCETTEEEE--EEEE-TTS-EEEECCSSSTE.....EEEEEEEH CS
  CN_hydrolase 183 pksmgppqwellgraralengcfviaanqvgg..yeqlilwpvghSaiidpdGrilaglgeeeeg.....vliaeidl 253
                   ++++g+++w++l +aral+++c +i ++q g+    ++i++++ghS+i++ +G+i+a+ g++e       +++a+ d 
    EGE27519.1 188 THRTGQAHWQMLLQARALDSQCLIIGSAQGGIhqIGNSIRQTWGHSMIVNAHGQIIADSGRTEVAdngycIAYADYDA 265
                   9*******************************877889*********************9988656677777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2294.83
//
Query:       EGE27520.1  [L=61]
Description: hypothetical protein EA1_02627 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.071   13.1   0.0      0.083   12.8   0.0    1.0  1  DUF5090   Domain of unknown function (DUF5090)


Domain annotation for each model (and alignments):
>> DUF5090  Domain of unknown function (DUF5090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.6e-06     0.083      22      72 ..       6      56 ..       3      60 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.6e-06
     DUF5090 22 eekvkeqiekieeSklGkklPtevknlklkdiikitlllkav.llipiyllv 72
                + +  ++  + ++Sk+ kk+P + +++ + d ++++ll++ + ++  i++++
  EGE27520.1  6 DTRCIDTKFNLQQSKVPKKIPND-DQMPVSDRHWVLLLSHSLpNFASIFMMI 56
                66667777899**********99.59************98873666788887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 517.25
//
Query:       EGE27521.1  [L=66]
Description: putative thiamine biosynthesis protein ThiS [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-09   36.3   0.0    7.7e-09   36.1   0.0    1.0  1  ThiS      ThiS family


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   4.3e-13   7.7e-09       1      77 []       4      66 .]       4      66 .] 0.92

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 4.3e-13
                EEETTCCHHHHTCEEEEESSTSBHHHHHHHHHHHTCHHGTTTTEEEEETTEEEGC.CTTTSB--TTCEEEEEESTTC- CS
        ThiS  1 vllfaelrelageeelelaegstvaelleaLgerypelalerrvavavNgeivpr.lwldtelkdgDevailppVaGG 77
                v+l++++ + +          stv ell+a g  +       r+av++++ +vp+ +   telkdg  ++++++V+GG
  EGE27521.1  4 VTLNGQPTQSD---------HSTVFELLNAHGLTQ------GRFAVEIDEMLVPKsRLTLTELKDGMSIEVVQAVGGG 66
                66777777777.........5**************......**************88********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 551.79
//
Query:       EGE27522.1  [L=127]
Description: hypothetical protein EA1_02637 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-26   91.8   6.3    2.3e-26   91.8   6.3    1.7  2  DUF423           Protein of unknown function (DUF423)


Domain annotation for each model (and alignments):
>> DUF423  Protein of unknown function (DUF423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   6.3   1.3e-30   2.3e-26       1      88 []      21     106 ..      21     106 .. 0.98
   2 ?   -1.8   0.1      0.21   3.8e+03      57      69 ..     108     120 ..     107     124 .. 0.74

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1.3e-30
      DUF423   1 lGAfgaHglkkkleekalesfetavqYqlyhalallavallaskaaasrllklagllflaGivlFSgslyllaltgkkvlgaitPiGG 88 
                 +GAfgaHglk+ ++e+al++++ta+ Y ++hal+ll++++l  ++  + +  lag+l+ +Giv+FSg+ly++al   ++lgaitPiGG
  EGE27522.1  21 FGAFGAHGLKHIADEYALQIWQTATLYLFIHALGLLVIGVL--QHIGRYRSALAGVLLQMGIVIFSGTLYTMALGAPRWLGAITPIGG 106
                 6*********99999**************************..789999**************************************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.21
      DUF423  57 lflaGivlFSgsl 69 
                 l+++G ++F+ ++
  EGE27522.1 108 LLIIGWLVFALQI 120
                 6788888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1038.74
//
Query:       EGE27523.1  [L=371]
Description: RNA polymerase factor sigma-32 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-17   63.0   0.0    4.8e-17   61.5   0.0    1.9  1  Sigma70_r2       Sigma-70 region 2
    1.8e-17   62.6   0.7    8.5e-16   57.2   0.2    2.7  2  Sigma70_r4       Sigma-70, region 4
    1.1e-05   25.3   0.1    2.6e-05   24.2   0.1    1.5  1  Sigma70_r1_2     Sigma-70 factor, region 1.2
  ------ inclusion threshold ------
      0.012   15.0   2.7      0.025   13.9   2.7    1.5  1  T4_neck-protein  Virus neck protein
      0.025   14.4   1.0       0.18   11.7   0.1    2.4  2  HTH_25           Helix-turn-helix domain
       0.11   12.5   3.1       0.28   11.2   0.0    2.8  3  UCR_14kD         Ubiquinol-cytochrome C reductase complex 14k
       0.15   12.1   0.2        4.5    7.4   0.0    2.4  2  HTH_3            Helix-turn-helix
       0.48   10.6   9.4        1.8    8.7   0.3    2.9  3  Sigma70_r3       Sigma-70 region 3
        1.5    8.9   4.6         17    5.6   0.2    2.9  3  ENT              ENT domain


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   2.4e-20   4.8e-17       1      70 [.     136     205 ..     136     206 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 2.4e-20
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 lv ++l++v ++ar++ g g++  Dl+Qe++l+l++av+rfdp++gv++ ++++ +++ ++  ++ k++r
  EGE27523.1 136 LVMSHLRFVIHIARSYSGYGLSQADLIQEGNLGLMKAVKRFDPNKGVRLVSFAVHWIKAEIHEFVIKNWR 205
                 7899*********************************************************999999887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.038        76       5      20 ..     112     127 ..     109     132 .. 0.90
   2 !   57.2   0.2   4.3e-19   8.5e-16       1      50 []     309     360 ..     309     360 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.038
                 S-HHHHHHHHHHHTTT CS
  Sigma70_r4   5 Lpererevlelrfgeg 20 
                 L+++e + l  r++++
  EGE27523.1 112 LTPEEERALAERYYHD 127
                 9************987 PP

  == domain 2  score: 57.2 bits;  conditional E-value: 4.3e-19
                 HHHHS-HHHHHHHHHHH..TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf..geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 a+++L+er r+++++r+  +++ Tl+E++++++iS erVrqiek+A++k+++
  EGE27523.1 309 AMETLDERSRDIITQRWlaDQKSTLHELAATYNISAERVRQIEKNAMNKIKE 360
                 799**********************************************996 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   1.3e-08   2.6e-05       3      27 ..      99     123 ..      99     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.3e-08
                   HHHHHHHHHHSX--THHHHHHHHHH CS
  Sigma70_r1_2   3 vrlYLrEIGriPLLtaeEEveLAkr 27 
                   +++Y++ + +iP Lt+eEE++LA+r
    EGE27523.1  99 LGAYINTVHQIPILTPEEERALAER 123
                   579********************99 PP

>> T4_neck-protein  Virus neck protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.7   1.2e-05     0.025     198     242 ..      16      61 ..       6      84 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
  T4_neck-protein 198 dilnigededeeldldkvraldGrwdigieqgaev.dqiedevdkf 242
                      + ++++   d+e+d d ++aldG ++i+ e++ae+ d+i+d++dk 
       EGE27523.1  16 NHEGYDDTYDDEFDEDLIEALDGFHEIDDEEYAEIiDDIDDDIDKP 61 
                      45678888899***********************648999999984 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.25   5.1e+02      15      32 ..     239     256 ..     229     259 .. 0.84
   2 ?   11.7   0.1     9e-05      0.18       9      45 ..     329     365 ..     327     369 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.25
                 HHHHHSS--HHHHHHHHC CS
      HTH_25  15 evaketkIrkdylealEe 32 
                 ++a+ +++ ++++ ++E+
  EGE27523.1 239 AIANDLNVTVKQVLEMES 256
                 689**********99996 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 9e-05
                 TT--HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHH CS
      HTH_25   9 rglsleevaketkIrkdylealEeddfdalpepvylr 45 
                 ++ +l e+a+  +I+++ ++++E++ ++++ e++ l 
  EGE27523.1 329 QKSTLHELAATYNISAERVRQIEKNAMNKIKEAITLD 365
                 5679**************************9998765 PP

>> UCR_14kD  Ubiquinol-cytochrome C reductase complex 14kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.45   9.1e+02      27      43 ..      20      37 ..      18      48 .. 0.86
   2 ?   11.2   0.0   0.00014      0.28      17      48 ..     148     179 ..     134     183 .. 0.82
   3 ?   -1.7   0.1       1.5     3e+03      35      57 ..     303     325 ..     295     363 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.45
    UCR_14kD 27 ydDllsee.nedvqeALr 43
                ydD++++e +ed+ eAL 
  EGE27523.1 20 YDDTYDDEfDEDLIEALD 37
                8******99999999996 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00014
    UCR_14kD  17 aagyrklGLrydDllseenedvqeALrrLpee 48 
                 a +y  +GL   Dl++e n  + +A++r +++
  EGE27523.1 148 ARSYSGYGLSQADLIQEGNLGLMKAVKRFDPN 179
                 4469************************9886 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.5
    UCR_14kD  35 nedvqeALrrLpeeeaydRvfRl 57 
                 + +++ A++ L+e+  +  ++R 
  EGE27523.1 303 TTALKDAMETLDERSRDIITQRW 325
                 56667777777777666555554 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.098     2e+02      34      52 ..     230     248 ..     222     251 .. 0.85
   2 ?    7.4   0.0    0.0023       4.5       8      32 ..     329     353 ..     324     368 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.098
                 SCSBHHHHHHHHHHHTSEH CS
       HTH_3  34 rnPsletlkklakaLgvsl 52 
                  + +l+ + ++a+ L+v+ 
  EGE27523.1 230 NQLTLDEATAIANDLNVTV 248
                 67899************96 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0023
                 TTHHHHHHHHHHTSSHHHHHHHHTT CS
       HTH_3   8 lglsqeeLAeklGvsrstisriEnG 32 
                 ++ ++ eLA+  ++s   +++iE++
  EGE27523.1 329 QKSTLHELAATYNISAERVRQIEKN 353
                 566899*****************98 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.7       6.3   1.2e+04      54      73 ..      42      60 ..      40      62 .. 0.61
   2 ?    8.7   0.3   0.00091       1.8      26      76 ..     240     291 ..     236     293 .. 0.79
   3 ?    7.7   0.1    0.0019       3.8      22      44 ..     332     354 ..     327     371 .] 0.78

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.3
                SSSSTTXBSTTTXBXSSSXX CS
  Sigma70_r3 54 vgeeedtelgdlleddeaes 73
                + +ee  e+ d + dd ++ 
  EGE27523.1 42 IDDEEYAEIIDDIDDD-IDK 60
                5666666666666666.555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00091
                 HHHHHTXXHHHHHHH.HHHHXXXEETTXBSSSSTTXBSTTTXBXSSSXXHHH CS
  Sigma70_r3  26 iAeeLglseekVrev.leaarepvSldlpvgeeedtelgdlleddeaespee 76 
                 iA+ L++++++V+e+  +++    S++ ++++++++++   l  ++a++p++
  EGE27523.1 240 IANDLNVTVKQVLEMeSRLTSYDASFEAQDSDDDEGRYAPQLFLEDAVNPAD 291
                 9*************944567777999*9999999998766666666677776 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0019
                 XHHHHHHHHTXXHHHHHHHHHHH CS
  Sigma70_r3  22 tpeEiAeeLglseekVrevleaa 44 
                 t +E+A+  ++s e+Vr++ + a
  EGE27523.1 332 TLHELAATYNISAERVRQIEKNA 354
                 889**************985554 PP

>> ENT  ENT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.025        49      30      57 ..      30      57 ..      28      65 .. 0.90
   2 ?   -3.0   0.0       4.1   8.2e+03      45      62 ..     115     132 ..     113     146 .. 0.80
   3 ?    5.6   0.2    0.0085        17      28      56 ..     328     356 ..     318     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.025
         ENT 30 kkllteLrkeLsIsterHraelrrvksD 57
                ++l++ L    +I++e+++++++ +++D
  EGE27523.1 30 EDLIEALDGFHEIDDEEYAEIIDDIDDD 57
                67999999999**************776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.1
         ENT  45 erHraelrrvksDerlkt 62 
                 e+ ra+++r + D  +++
  EGE27523.1 115 EEERALAERYYHDGDVEA 132
                 678899999999987766 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0085
         ENT  28 ekkkllteLrkeLsIsterHraelrrvks 56 
                 ++k+ l+eL  + +Is er r++ +++ +
  EGE27523.1 328 DQKSTLHELAATYNISAERVRQIEKNAMN 356
                 678889****************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2744.58
//
Query:       EGE27524.1  [L=139]
Description: SirA-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-12   46.1   0.0    4.2e-12   45.7   0.0    1.3  1  TusA      Sulfurtransferase TusA
  ------ inclusion threshold ------
      0.046   14.1   2.0        6.2    7.4   0.3    3.0  3  zf-met    Zinc-finger of C2H2 type
      0.077   13.1   0.0       0.14   12.3   0.0    1.4  1  SL4P      Uncharacterized Strongylid L4 protein


Domain annotation for each model (and alignments):
>> TusA  Sulfurtransferase TusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0     7e-16   4.2e-12       3      52 ..      64     113 ..      62     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 7e-16
                 EEBTT-STTCCHHHHHHHHCCCGCT-EEEEEESSCHHHHHHHHHHHHHTE CS
        TusA   3 lDlrGlvCPePllklkkalekleegevlevladdpaatediprfakklgh 52 
                 +D+r+l+CP+Pllk+k +l+ + +++ l ++a+d+ + +d+  +++k+ +
  EGE27524.1  64 YDARNLPCPMPLLKAKVTLRHVTDNQALYLIATDQNSQKDLVTYCNKNAL 113
                 7*********************************************9876 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3     0.001       6.2       6      19 ..      16      29 ..      14      30 .. 0.93
   2 ?    4.6   0.0    0.0074        44      13      23 ..      39      49 ..      35      50 .. 0.89
   3 ?   -0.3   0.0      0.27   1.6e+03       8      19 ..     105     116 ..     104     117 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.001
      zf-met  6 CnvtfnsesqlksH 19
                C ++f+s +q+ +H
  EGE27524.1 16 CLCQFYSVTQMLNH 29
                99************ PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0074
      zf-met 13 esqlksHlqGK 23
                +s+l++Hl +K
  EGE27524.1 39 KSTLNAHLTSK 49
                799*******9 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.27
      zf-met   8 vtfnsesqlksH 19 
                 vt++++++l+ H
  EGE27524.1 105 VTYCNKNALIVH 116
                 788999999888 PP

>> SL4P  Uncharacterized Strongylid L4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.3e-05      0.14      21      87 ..      34     103 ..      29     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
        SL4P  21 ItYkDkddLfekfkkklkelgipldevywvdedgd...rilirnaddLleavkdnavvklyvrdeadsed 87 
                 +t +Dk  L   +  kl+ l++pl+ v   ++ ++   ++ +  a+  l++v+dn++++l+++d++ ++d
  EGE27524.1  34 LTAEDKSTLNAHLTSKLEALNLPLNIVEVFYDARNlpcPMPLLKAKVTLRHVTDNQALYLIATDQNSQKD 103
                 5668*********************7765555544445889999999999***********999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1090.61
//
Query:       EGE27525.1  [L=217]
Description: hypothetical protein EA1_02652 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-11   42.2   0.0    8.8e-11   41.4   0.0    1.5  1  YcxB           YcxB-like protein
     0.0017   17.9   1.2     0.0021   17.6   1.2    1.1  1  DUF373         Domain of unknown function (DUF373)
  ------ inclusion threshold ------
      0.017   15.4   1.8      0.027   14.7   1.8    1.2  1  DUF4181        Domain of unknown function (DUF4181)
       0.25   11.2   1.4       0.33   10.8   1.4    1.2  1  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> YcxB  YcxB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0     2e-14   8.8e-11       4      61 .]     140     202 ..     137     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2e-14
        YcxB   4 dgievdsgggesi.ipWdsiekvkEtkdyfyLfls....ggsafiiPKraf.tkeeaeafrell 61 
                  g++++ g ++s  ipW+ ++++ Et+dy++++++    +g  +iiPKr   ++  +++++++l
  EGE27525.1 140 RGMQMRAGATQSAtIPWHTVSSWDETDDYLFMMFDmkgqKG-SQIIPKRLEkQGLPIDTIKKHL 202
                 78999888888888****************88877755433.49************99999986 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.2   4.6e-07    0.0021     155     254 ..      46     142 ..      34     162 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.6e-07
      DUF373 155 ktiLvplGlllliyalllllglpelalaiillllGlylllrGfgldelleelleklkesleegritfvtyvvallllligiisgyislesvssasvssg 253
                 + i++ l ++  i +l+ + g++++++ ++l+l+G+yll r +g++ +++   ++ ++ + ++++     ++ l +   g++ ++ + ++++++++  g
  EGE27525.1  46 EWIVIALMVVAAIAGLVFVSGYSTIIFWLMLILVGVYLLARTLGMKWYMK---REYEKQVASTQMPEQLHTLQLGVQSHGLVMAMPTSTDLMKSPQMRG 141
                 5567777788889999999***************************9776...5555566666665555555666655666555555555555444444 PP

      DUF373 254 l 254
                 +
  EGE27525.1 142 M 142
                 4 PP

>> DUF4181  Domain of unknown function (DUF4181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.8     6e-06     0.027      29      86 ..      40      97 ..      27     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6e-06
     DUF4181 29 klhkkielilrvlfiifiilsliiilsreyvdiiilifvflvvlelfRav.mewkyere 86
                k  k++e+i+ +l++++ i +l+++ s +++ i++l+ +++ v  l R++ m+w  +re
  EGE27525.1 40 KSLKRTEWIVIALMVVAAIAGLVFV-SGYSTIIFWLMLILVGVYLLARTLgMKWYMKRE 97
                557999***7778888888885555.4455566699999999999****8677766666 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.4   7.3e-05      0.33     129     178 ..      38      86 ..       4     106 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.3e-05
  FA_desaturase 129 ksrrrkwrllawlllllawlglwlalllllglall.lwlvplllllfllal 178
                    + +  k   ++w +++l +++++++l++++g ++  +wl+ +l+++ lla+
     EGE27525.1  38 TLKSLK--RTEWIVIALMVVAAIAGLVFVSGYSTIiFWLMLILVGVYLLAR 86 
                    333333..3333334443466666666666666666999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1024  (0.0571142); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1638.96
//
Query:       EGE27526.1  [L=422]
Description: seryl-tRNA synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-37  129.8   0.0    1.8e-37  129.0   0.0    1.3  1  tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, 
    6.9e-26   90.6   3.6    6.9e-26   90.6   3.6    1.6  2  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
  ------ inclusion threshold ------
      0.074   13.4   6.8       0.16   12.3   6.8    1.5  1  OmpH          Outer membrane protein (OmpH-like)
      0.075   11.6   1.2        0.1   11.2   1.2    1.1  1  FapA          Flagellar Assembly Protein A
      0.092   10.7   2.6       0.14   10.1   2.6    1.2  1  Prominin      Prominin
       0.13   11.7   0.0       0.24   10.9   0.0    1.4  1  PE-PPE        PE-PPE domain
       0.56   10.7   4.2       0.18   12.3   1.0    1.9  2  NPV_P10       Nucleopolyhedrovirus P10 protein
        3.3    6.5   8.7       0.45    9.4   4.7    1.5  2  Spc7          Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   8.2e-41   1.8e-37       3     179 .]     218     398 ..     217     398 .. 0.94

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 8.2e-41
                   EEETTSEEEEE-SSSHHHHHHHHHHHEEEBGGSSEEEEEEEEEEBTTTS....TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   3 ledrndreyiLkPtneetfvelirdevlrskrLPlklyqiqtkyRdEks....dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlg 95 
                   ++ r ++ey+L+Pt+e ++++ +rd +l +++LP+kl++ ++++R E+     d+rGL+R+++F++ + + +  ++s+ + l+d+  +++ ++++l 
    EGE27526.1 218 FKLRGEKEYYLIPTSEVPLTNSVRDTILSPRDLPIKLTAHTPCFRSEAGsagrDTRGLIRQHQFEKVEMVQVTRADSSMQALEDMTAQAEYVLQALE 314
                   5668899*******************888899****************66999******************************************** PP

                   .SCEEEEEEGTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEE.EEHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  tRNA-synt_2b  96 lefraiielmsaksadykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimicaa.igveRllsaileqn 179
                   l++r++ ++++++ +++ +++++e++ +s++ ++ei++++++g+ +++r++a+ +d +  ++ v++++ + ++v R+l+aile++
    EGE27526.1 315 LPYRVMTLCTGDMGFSAVKTYDIEVWLPSQNMYREISSCSNCGDFQARRMSARLKDGKH-SELVHTLNGSgLAVGRTLLAILENH 398
                   ***********999****************************************76665.56788888877************86 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   3.6   3.1e-29   6.9e-26       1     108 []       1     107 [.       1     107 [. 0.99
   2 ?   -2.9   0.1       3.6     8e+03       8      31 ..     277     299 ..     275     314 .. 0.45

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 3.1e-29
                   ---HHHHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   1 MLDiklirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleael 97 
                   MLD+k++r n+e++k+kl+ Rg +++dv+   e++++r+++qv++e+lqa++N+ +k++g++k+ +ed++el+++++ ++e +ka+e+elkel++ +
    EGE27526.1   1 MLDPKFLRGNLEELKAKLAVRG-YDLDVAFWQEVENQRKSIQVKTEALQAKKNAGAKKVGELKRHGEDTSELMNQMQLVSEAMKAAENELKELQNTI 96 
                   *********************5.99************************************************************************ PP

                   HHHHCTS---- CS
  Seryl_tRNA_N  98 eklllaiPNip 108
                   ++++l+iPN+p
    EGE27526.1  97 TTAALQIPNLP 107
                   *********98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.6
                   HH.-HHHHHHHHCCCTCCCHHHHHH CS
  Seryl_tRNA_N   8 re.npeavkeklkkRgedkadvdel 31 
                   r+ ++e+v+  + +R   ++ +++l
    EGE27526.1 277 RQhQFEKVEMVQVTRA--DSSMQAL 299
                   5545555555555553..2333333 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.8   7.1e-05      0.16      33     103 ..      31     101 ..      12     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-05
                 HHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  33 aeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqka..qelqkkqqellkpildkinkaik 103
                 +e+e+++k++q + e+lq+k+++   ++k  el++  ++  ++++q +   e +k+ + +lk++++ i++a  
  EGE27526.1  31 QEVENQRKSIQVKTEALQAKKNA--GAKKVGELKRHGEDTSELMNQMQlvSEAMKAAENELKELQNTITTAAL 101
                 799**************977776..6899999*****999999999999977777777778889999998865 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.2   4.6e-05       0.1     325     406 ..      15     101 ..       9     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
        FapA 325 eievgldepelkekl.keleeeleeleeeleklkkk....ikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelke 406
                 + +++++  +l+  + +e+e++ ++++ ++e l++k     kk+ +lk  ++ +se ++q++ + e++++ ++el+el++ + +   
  EGE27526.1  15 KAKLAVRGYDLDVAFwQEVENQRKSIQVKTEALQAKknagAKKVGELKRHGEDTSELMNQMQLVSEAMKAAENELKELQNTITTAAL 101
                 556666777788888899********888888888877999999999999999************************9999876655 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.6   6.3e-05      0.14     631     715 ..       9      96 ..       3     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.3e-05
    Prominin 631 ekleelanelsngkknlkqslkneaqdlraiqqelvlplessvkklkksvkklde...ensdlqesikkllaaveraenflkkngsei 715
                  +leel+ +l  +  +l +++++e+++ r+  q +++ l+++ +   k+v +l++   ++s+l ++++ + +a+++aen+lk+  ++i
  EGE27526.1   9 GNLEELKAKLAVRGYDLDVAFWQEVENQRKSIQVKTEALQAKKNAGAKKVGELKRhgeDTSELMNQMQLVSEAMKAAENELKELQNTI 96 
                 579999999999999****************************************9988999*******************9876665 PP

>> PE-PPE  PE-PPE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.24     181     204 ..     220     243 ..     168     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
      PE-PPE 181 rgakttyylipteelPLlqplrsl 204
                   ++++yylipt e+PL++ +r+ 
  EGE27526.1 220 LRGEKEYYLIPTSEVPLTNSVRDT 243
                 567899**************9986 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.0   8.2e-05      0.18      15      75 .]      46     108 ..      34     108 .. 0.86
   2 ?   -2.9   0.1       4.3   9.6e+03      27      50 ..     289     305 ..     282     314 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.2e-05
     NPV_P10  15 avddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiLnpde..vPdlpd 75 
                 a++ k +a  ++v +++   +d++el ++++  s+++++ e+++++ q++ ++    +P+lpd
  EGE27526.1  46 ALQAKKNAGAKKVGELKRHGEDTSELMNQMQLVSEAMKAAENELKELQNTITTAAlqIPNLPD 108
                 55666666678999*************************************9776799*9997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.3
     NPV_P10  27 vddvqenlpdvtelnekLdaqsaq 50 
                 v++ ++ ++        L++++aq
  EGE27526.1 289 VTRADSSMQA-------LEDMTAQ 305
                 4444444444.......3333333 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.7    0.0002      0.45     185     252 ..      31      98 ..       7     104 .. 0.63
   2 ?   -4.3   0.1       2.9   6.5e+03     236     256 ..     289     309 ..     279     313 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0002
        Spc7 185 klqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiae 252
                 ++ e +++  +++ e L++ +++ a+   e++++ ++++el +q++ ++e++++++++ +el++ i  
  EGE27526.1  31 QEVENQRKSIQVKTEALQAKKNAGAKKVGELKRHGEDTSELMNQMQLVSEAMKAAENELKELQNTITT 98 
                 44444444455666677777777777777777777777777777777777777777777777777665 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 2.9
        Spc7 236 ieelkeqkseleeeiaeaerv 256
                 ++ ++++++ le+ +a+ae v
  EGE27526.1 289 VTRADSSMQALEDMTAQAEYV 309
                 444555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1449  (0.0808188); expected 358.6 (0.02)
Passed bias filter:                      997  (0.0556082); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 2829.94
//
Query:       EGE27527.1  [L=662]
Description: transketolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.6e-160  531.6   0.2   8.7e-160  531.2   0.2    1.1  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
    1.8e-48  164.6   0.1    3.4e-48  163.7   0.1    1.4  1  Transket_pyr     Transketolase, pyrimidine binding domain
    2.3e-13   50.1   0.2    4.6e-13   49.1   0.2    1.5  1  Transketolase_C  Transketolase, C-terminal domain
    5.4e-06   25.6   0.1    9.9e-06   24.7   0.1    1.4  1  E1_dh            Dehydrogenase E1 component
    0.00013   21.2   0.0     0.0033   16.7   0.0    2.2  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
     0.0023   17.7   0.4        0.2   11.4   0.4    2.6  1  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
  ------ inclusion threshold ------
      0.037   13.8   0.1       0.11   12.4   0.1    1.7  1  DAHP_snth_FXD    DAHP synthase ferredoxin-like domain


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  531.2   0.2  3.4e-163  8.7e-160       3     334 .]       8     337 ..       6     337 .. 0.99

  Alignments for each domain:
  == domain 1  score: 531.2 bits;  conditional E-value: 3.4e-163
                      HHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS- CS
  Transketolase_N   3 kkavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgsktp 96 
                      ++ +naiR+La+Dav++a+sGhPGap+g+adiaevl++++l+hnP++ kw++RDRfvLsnGh+s+llY+llhLtGydls++dlk+frql+skt+
       EGE27527.1   8 RHNANAIRILAMDAVQQANSGHPGAPMGMADIAEVLWREFLRHNPKNAKWVNRDRFVLSNGHGSMLLYALLHLTGYDLSIDDLKNFRQLHSKTA 101
                      5679****************************************************************************************** PP

                      SS--TTTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEE CS
  Transketolase_N  97 GhPelghtagvevttGPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGe 190
                      GhPe+g+++g+e+ttGPLGqGianavg+alaektlaa++nkp+  i+dh+ty++lgDgclmeGvs+ea+slagtl+LgkLi++yDdn isidGe
       EGE27527.1 102 GHPEYGYADGIETTTGPLGQGIANAVGFALAEKTLAAQFNKPDNAIIDHFTYAFLGDGCLMEGVSHEACSLAGTLGLGKLIAYYDDNGISIDGE 195
                      ********************************************************************************************** PP

                      GGGT--S-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHHHHHHTTS-TT-TS- CS
  Transketolase_N 191 teisftedvakrfeaygWhvievedgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaalkkklGfdpeksfe 284
                      +e +f++d+akrfeaygW+v++  dg+d+ ai++a ++akae  kP+li ++t+iG gsp+k+g+e +hGapLg de+a +++++G+  +++f 
       EGE27527.1 196 VEGWFSDDTAKRFEAYGWQVLK-IDGHDADAIRDATNQAKAESAKPTLIICKTIIGLGSPNKQGKEISHGAPLGLDEIALTRTQMGWADTTPFI 288
                      *********************9.9********************************************************************** PP

                      --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT--- CS
  Transketolase_N 285 vpeevydaykekvaegakaeeeWeekfaaykkkapeeaaelerrlsgelP 334
                      + +e+y a++++++ g+  e++W+++fa+y+ k+p+eaael rr sg+lP
       EGE27527.1 289 ITDEMYRAWDATAK-GSTDEAAWNKQFAEYQDKYPKEAAELLRRFSGDLP 337
                      ***********998.*********************************98 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.1   1.3e-51   3.4e-48       2     176 ..     357     527 ..     356     528 .. 0.98

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 1.3e-51
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT..TEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg..egrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqai 96 
                   +ia+rka+++a+a+l+   pe+++++aD+ag++++ ++g +  q+  +g+++++g++E++++++a+G al+g+ ++++ a+F++F++    ya++a+
    EGE27527.1 357 SIATRKASQNAIAALAPHLPEILGGSADLAGSNLTLWSGAKGVQEyaDGNYVHYGVREFGMTAIANGVALHGG-FIPYTATFLMFME----YARNAV 448
                   799*************************************9999999*************************6.*************....****** PP

                   HCHHHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  97 rsgeakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   r +++++k++v+ v+t+++ig+gedGp+hq++e++a lr++p+ +v+rP+d +et+ +++ a++++   P+ l+l++++l 
    EGE27527.1 449 R-MSSLMKQRVInVYTHDSIGLGEDGPTHQPVEQIANLRMTPNHYVWRPCDTVETAVAWKMALKTK-TAPSSLILSRQNLT 527
                   *.**************************************************************76.69**********85 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.2   1.8e-16   4.6e-13      11     124 .]     554     654 ..     545     654 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.8e-16
                      SEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSSEEEEEEE-SS CS
  Transketolase_C  11 dvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgldapvkrvggpdv 104
                      + +++a+Gs+ve a++A e+Le    +++Vv++++ + + k++       + + v+  + ++r+++++++++++++  f gld++v+ ++ +  
       EGE27527.1 554 KAIIIATGSEVELAMQAYEQLE----GVRVVSMPCAEIFVKQDSG-----YIESVLPSDVRVRVAVEAAITDYWYK--FVGLDGKVVGMTTF-- 634
                      679******************8....99****************9.....**************************..***********999.. PP

                      SSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C 105 iepgsaeelekafgldaeki 124
                      +e+++a+ l ++fg++++++
       EGE27527.1 635 GESAPAKVLFEHFGITTQAV 654
                      99**************9876 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   3.9e-09   9.9e-06      96     220 ..     112     243 ..      90     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3.9e-09
                 BEEE-SSTTTHHHHHHHHHHHHH..........HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETTEEHHHH-S---GGG..T CS
       E1_dh  96 ilggngivgaqvplvaGialaak..........iegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygisTeaekasaskeladrar 183
                 i ++ g++g     + G ala k           +  ++ + ++ GDg   +G  +ea  la + +l   i     N++ i  e+e +  s++ a+r  
  EGE27527.1 112 IETTTGPLGQGIANAVGFALAEKtlaaqfnkpdNAIIDHFTYAFLGDGCLMEGVSHEACSLAGTLGLGKlIAYYDDNGISIDGEVE-GWFSDDTAKRFE 209
                 55667777777555558888888888887665544556778999***********************776*******999998875.6778899999** PP

                 TTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEE CS
       E1_dh 184 gvgipglrVdgnDplavyeAvkfAaeraregkgplli 220
                 ++g   l++dg D  a++ A+  A+       +p+li
  EGE27527.1 210 AYGWQVLKIDGHDADAIRDATNQAKAE---SAKPTLI 243
                 **********************99864...3557777 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06    0.0033      22     179 ..      11     196 ..       4     207 .. 0.73
   2 ?    2.1   0.0     0.035        89     234     271 ..     208     245 ..     200     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.3e-06
  DXP_synthase_N  22 aeelrefliesvsk.tggHlasnLgvveLtlalhyvf......d...tpkDklvwDvgHqa...YvhKiltgRkdkfktlrqkgGls....gfpk 99 
                     a+ +r   +++v++ ++gH ++ +g+ +++  l++ f      +    ++D++v   gH +   Y+   ltg   ++++l++   l+    g+p+
      EGE27527.1  11 ANAIRILAMDAVQQaNSGHPGAPMGMADIAEVLWREFlrhnpkNakwVNRDRFVLSNGHGSmllYALLHLTGYDLSIDDLKNFRQLHsktaGHPE 105
                     67788888888864268899999999888888888774432221222357999999999875557777789999888888877777611113333 PP

  DXP_synthase_N 100 rsEseyDafeagHsstsisaalGlavardlkge..........kkkvvaviGDgaltgGmafealnnigelk.kkllvilNdNemsisknv 179
                        ++    ++g  +  i+ a+G+a a+++             ++ + a +GDg l  G+++ea   +g+l   kl+  + dN  si+ +v
      EGE27527.1 106 YGYADGIETTTGPLGQGIANAVGFALAEKTLAAqfnkpdnaiiDHFTYAFLGDGCLMEGVSHEACSLAGTLGlGKLIAYYDDNGISIDGEV 196
                     33333334567788999**********776554355666666669999*********************99626999999*******9887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.035
  DXP_synthase_N 234 feelgfkYlGpidGhdleelikvleevkkl.kgpvllhv 271
                     fe+ g + l  idGhd +++ ++ +++k+   +p+l+ +
      EGE27527.1 208 FEAYGWQVL-KIDGHDADAIRDATNQAKAEsAKPTLIIC 245
                     666666644.69***************985267888865 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.4     8e-05       0.2      22     152 ..     109     244 ..      96     245 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8e-05
                   EC..ETTTS-TTTHHHHHHHHHH....H.....STT.....SEEEEEEEHHHHHHT..GGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTT CS
  TPP_enzyme_C  22 lt..sgglgtmGyglpaAiGakl....a.....kpd.....revvaivGDGgflmi..lqelatavrrnlpitvvvlnNegygmtggqqepfggkrk 100
                    +  ++++g +G g++ A+G +l    +     kpd     +  +a+ GDG+++    +++ + a   +l  ++  ++++g   + g+ e +++   
    EGE27527.1 109 ADgiETTTGPLGQGIANAVGFALaektLaaqfnKPDnaiidHFTYAFLGDGCLMEGvsHEACSLAGTLGLGKLIAYYDDNGIS-IDGEVEGWFS--- 201
                   555577999**************6555056777453334438999*******9976434556666677777777777777773.4443333332... PP

                   TTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH.CSSSEEEEE CS
  TPP_enzyme_C 101 sgpagkdlkpvdfaklaealGakgarvekadveeleealkeal.ekkgpalie 152
                            + d ak  ea+G ++++++ +d + +++a  +a  e+ +p+li 
    EGE27527.1 202 ---------D-DTAKRFEAYGWQVLKIDGHDADAIRDATNQAKaESAKPTLII 244
                   .........2.566777788888777788888888888888877777777775 PP

>> DAHP_snth_FXD  DAHP synthase ferredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.2e-05      0.11      15      62 ..     533     580 ..     525     582 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-05
  DAHP_snth_FXD  15 eevierieelGlkvhvskGeertViGviGdtskldkeqlealpgVekV 62 
                    +e i++ie+ G+   + kG+ + +i + G + +l ++  e+l+gV  V
     EGE27527.1 533 DEQIQNIEKGGYILAPEKGTLKAIIIATGSEVELAMQAYEQLEGVRVV 580
                    667899***************************************866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4625.65
//
Query:       EGE27528.1  [L=241]
Description: uridylate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-25   88.5   0.8    5.7e-25   88.3   0.8    1.0  1  AA_kinase  Amino acid kinase family
  ------ inclusion threshold ------
      0.082   12.8   0.2        1.8    8.5   0.1    2.6  2  WSN        Domain of unknown function


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.8   6.3e-29   5.7e-25       2     241 .]      10     219 ..       9     219 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 6.3e-29
                 EEEEEE-TTCCCCTCC.....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHH CS
   AA_kinase   2 rvVvKlGGssltdkee.....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaalla 95 
                 r+ +Kl G +l+ + +     + l+ +   ia l+  g ++ +V+Ggg+  +g   +k+gl  +                   d++++l++ ++   ++
  EGE27528.1  10 RILLKLSGEALAGGRDmgidaNILDQMSLSIAHLRGLGVQVGIVVGGGNLYRGSTLQKQGLVGRVTG----------------DQMGMLATVMNGLAMR 92 
                 899*********76668***99***************************999999998899999998................**************** PP

                 TTHGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCC CS
   AA_kinase  96 aglpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvp 194
                  +l  ++++ + + a++ +       +ves++++   + l++g+v ++  +    ++    ++++Dt+a+l + +++A  ++ +t VdGVyd+dp  ++
  EGE27528.1  93 DALVRRNIKTRLMSAIAIDT------VVESYSSRDAIRHLNNGEVCIFVAGT--GNP----FFTTDTAACLRGIEIEAGLILKATKVDGVYDKDPTTDD 179
                 *****************999......99999999999999999666555532..233....99************************************ PP

                 TTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 195 darllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvItn 241
                 da++++ +s+de++e           v+++ a+a++r++++p+ +++
  EGE27528.1 180 DAVKFDSLSFDEVLE-------KKLGVMDLTAIALCREHNVPLQVFD 219
                 ***************.......99999****************9985 PP

>> WSN  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0002       1.8       7      33 ..      77     103 ..      76     111 .. 0.94
   2 ?    1.1   0.0     0.043   3.8e+02      18      35 ..     153     170 ..     151     172 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0002
         WSN   7 eklsilaRitNaIsLqaglidgsikvd 33 
                 +++ +la ++N+ ++  +l++ +ik++
  EGE27528.1  77 DQMGMLATVMNGLAMRDALVRRNIKTR 103
                 7899********************986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.043
         WSN  18 aIsLqaglidgsikvddv 35 
                 +I ++agli + +kvd v
  EGE27528.1 153 GIEIEAGLILKATKVDGV 170
                 899***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1888.30
//
Query:       EGE27529.1  [L=184]
Description: ribosome recycling factor [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-57  194.0   1.3      2e-57  193.7   1.3    1.1  1  RRF        Ribosome recycling factor
     0.0048   16.3   4.0     0.0067   15.9   4.0    1.2  1  NBP1       Fungal Nap binding protein NBP1
  ------ inclusion threshold ------
      0.027   14.4   0.3      0.054   13.4   0.3    1.5  1  Paz_1      PAZ domain
       0.11   12.7   1.2        0.6   10.3   0.2    2.3  3  CRS1_YhbY  CRS1 / YhbY (CRM) domain


Domain annotation for each model (and alignments):
>> RRF  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   1.3   4.4e-61     2e-57       2     162 .]      21     182 ..      20     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: 193.7 bits;  conditional E-value: 4.4e-61
                 HHHHHHSS-SSSSCGGGTTSEEEETTEEEEGGGTEEEEESSTTEEEEEESSCCHHHHHHHHHHHSCC-SEEEEESSEEEEE--SSSHHHHHHHHHHHHH CS
         RRF   2 kkelsklrtgranpslldnikVeyygkktpLnqlAqvsvkeartllitpfdkslvkaiekaIlksdlglnpqqdgevlrvpipplTeErrkelvkeakk 100
                 +  +sklrtgra+p++l  ++V+yyg+ tpLnq+A+++v+++rtll++pf++s+v+a+ kaI+++dlglnp    +v+rvp+p lTeE+r+++ k a++
  EGE27529.1  21 EAAFSKLRTGRAHPGILSGVMVSYYGSDTPLNQVASINVEDSRTLLVQPFERSMVQAVDKAIREADLGLNPM-TADVIRVPMPALTEETRRDMQKIARN 118
                 6789*******************************************************************5.7889********************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHH.C.S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
         RRF 101 aaekakvairniRrdankklkklek.k.iseDdvkkaekeiqkltdkyikeidellkakekell 162
                  ae++++++rniRrd+ +++k+l k k iseDd+++a ++iqkltdk+i+ id+ l++ke+el+
  EGE27529.1 119 DAEQTRISVRNIRRDMLSDIKDLLKdKeISEDDERRAADDIQKLTDKFIATIDSRLEKKESELM 182
                 *************************659***********************************8 PP

>> NBP1  Fungal Nap binding protein NBP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   4.0   1.5e-06    0.0067     132     212 ..     105     182 ..      84     184 .] 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-06
        NBP1 132 reerkklkdrilrseaFkkkllelkydkqmleqLrrgrssnkserrvslrnnnleeDqvvlLqkkikklesklkdlekeLe 212
                 +ee+++  ++i+r++a + +++  +  + ml++++   ++++ +++    +    +D  +l  k i  ++s+l+++e+eL 
  EGE27529.1 105 TEETRRDMQKIARNDAEQTRISVRNIRRDMLSDIKDLLKDKEISED---DERRAADDIQKLTDKFIATIDSRLEKKESELM 182
                 68999999**********************************9999...56677777777778889*************96 PP

>> Paz_1  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   1.2e-05     0.054       7      45 ..     115     153 ..     109     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
                 HHHTSSS-TS-EEEETT----EEEEEEEESGGSTTHHHH CS
       Paz_1   7 lerndfnpkrirvkpigidfvgrvqdvfkakekgeeffr 45 
                 + rnd +  ri v+ i  d++  ++d++k ke  e+  r
  EGE27529.1 115 IARNDAEQTRISVRNIRRDMLSDIKDLLKDKEISEDDER 153
                 679*****************************9987655 PP

>> CRS1_YhbY  CRS1 / YhbY (CRM) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.9   8.3e+03      56      66 ..      12      22 ..       5      46 .. 0.71
   2 ?   10.3   0.2   0.00013       0.6       1      44 [.     104     147 ..     104     149 .. 0.97
   3 ?    0.0   0.0      0.22   9.7e+02      26      43 ..     161     178 ..     159     180 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.9
   CRS1_YhbY 56 nmkrmaeiLee 66
                 m++ +e Le+
  EGE27529.1 12 RMQKSIEALEA 22
                46666666665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
   CRS1_YhbY   1 LtekelrrLrhlairlkpkvkiGkaGvtkevvdeiheklkteel 44 
                 Lte+ +r ++++a++  ++++i  + +   ++ +i++ lk++e+
  EGE27529.1 104 LTEETRRDMQKIARNDAEQTRISVRNIRRDMLSDIKDLLKDKEI 147
                 79***************************************996 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.22
   CRS1_YhbY  26 Gvtkevvdeiheklktee 43 
                  +t+++++ i+ +l+++e
  EGE27529.1 161 KLTDKFIATIDSRLEKKE 178
                 5899**********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1073  (0.0598472); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1420.15
//
Query:       EGE27530.1  [L=248]
Description: undecaprenyl pyrophosphate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-71  240.9   0.0    1.3e-71  240.7   0.0    1.0  1  Prenyltransf  Putative undecaprenyl diphosphate synthase


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.7   0.0   7.4e-76   1.3e-71       1     224 []      19     239 ..      19     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 240.7 bits;  conditional E-value: 7.4e-76
                   EE--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEESSGGGS-H CS
  Prenyltransf   1 imDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellkeellkeelkellkegvrvrviGdlellpe 97 
                   imDGN R+ k+++l++ + Gh aG +al  i+e+cl lgv+v+tv+afS+eN+ R+k+evd lm+ll+ +++ e+l +++++++r+r+iGd+++++ 
    EGE27530.1  19 IMDGNNRFGKSKQLATGA-GHVAGKDALDPIVEHCLALGVEVLTVFAFSSENWARPKDEVDLLMRLLS-QTIYEQLPRMNQHRIRLRFIGDRSQIDG 113
                   9************77776.************************************************5.5777888********************* PP

                   HHHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT..SSSG.GGHSHHHHHCTSTT..TSSS-SEEEEESS--S-TTSSTTTTTT-E CS
  Prenyltransf  98 dvlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkekseekkk.eeideetlekhlytakalpdpDlliRtsGeeRlSnFllwqlayse 193
                   d+ + +++ae++t++ +  ++l+ia++Yg++++i++a+++l+k+++  + + ++id ++++ +l  a+ lp++D+liRt+Ge R+SnFllwq+ay+e
    EGE27530.1 114 DLVKLMAQAEAKTADFD-AMTLVIAISYGGQWDITNAAKKLAKQVELGHLSaDDIDIQMIKTQLELAD-LPSVDMLIRTGGEYRISNFLLWQTAYAE 208
                   **************555.5**********************999865444436778999******855.6*************************** PP

                   EEEESSSGGG--HHHHHHHHHHHHHCHHHTT CS
  Prenyltransf 194 lyfldvlWPdfskedllealleyqkrerrfg 224
                   l+f+ +lWP+f+ ++l e+++ ++ rerrfg
    EGE27530.1 209 LFFTPTLWPEFGCDELDEMIRIFAGRERRFG 239
                   *****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1970.46
//
Query:       EGE27531.1  [L=282]
Description: phosphatidate cytidylyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-59  200.5  20.6    4.8e-59  200.3  20.6    1.1  1  CTP_transf_1  Cytidylyltransferase family
    0.00031   20.8   2.7    0.00031   20.8   2.7    2.0  2  CarS-like     CDP-archaeol synthase
     0.0092   16.5   8.0     0.0092   16.5   8.0    3.5  4  SNARE_assoc   SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.3  20.6   8.1e-63   4.8e-59       1     264 [.       2     258 ..       2     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 200.3 bits;  conditional E-value: 8.1e-63
                   HHHHHHHHHHHHHHHHTTTSH...HHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHH...HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH-- CS
  CTP_transf_1   1 kqRvitalvlilivliilllgg..lvflllvavvvilalkElirlvrlkkrekrllllllslvlllllllflylesliallklvlllvlvllllvlk 95 
                   +qR+ ta++l+liv ++l++    +++l l+a+ v++a++E+++l  + ++ ++++l+     +l++++l ++l +++ ++ +v l + v+ +    
    EGE27531.1   2 WQRIKTAIILVLIVGFALFASSmpIFVLPLLAIGVLIAAHEWTKLMPKCRQPVQFILA-----VLIITMLSVALPWTWVFWWAVSLGIWVMATAWVA 93 
                   69*****************9996566777889999***************99999999.....5666666666666655555544444333333332 PP

                   -...HHHHHHHHHHHHHHHHHTHHHH.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---B-S-TTS---BHHHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1  96 vlkskskklervilallallyvvlllqslllienikeglllvllllalvvaaDigaYffGklfGktkllpkiSPkKTveGfigGlvaavvvglllal 192
                      +k++ + r ++++ a++  +++    +++  ++ + ++++++++lv++aD+gaYf+G+ fGk+k++p++SP+K++eG+ gGl+++ vv++++ +
    EGE27531.1  94 QYPNKERWYGRRLVYMGAVILTAAI---TAMYGLWQMSPWWLMYVFLLVWCADSGAYFIGRKFGKRKMAPNVSPNKSIEGLCGGLMVSGVVTVAVGY 187
                   2345555555555554444444444...58999**************************************************************** PP

                   HHHCTS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSS-S-SSSSS-HHHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1 193 vlskalalsllhllllslllslvavfGDLveSglKRafgiKDsGkliPGhGGilDRlDsllfaapvvyllle 264
                   +l+ +  +sl+ +l+ls l++l++++GDL+eS+lKR++giKDsG+++PGhGGilDR+Dsll a+p+++l ++
    EGE27531.1 188 YLQLS-GMSLVLFLILSWLTVLASILGDLFESMLKRRAGIKDSGTILPGHGGILDRIDSLLSAIPIFALGFW 258
                   ***98.69***********************************************************98766 PP

>> CarS-like  CDP-archaeol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.9      0.66   3.9e+03     127     141 ..      55      69 ..      26      93 .. 0.69
   2 !   20.8   2.7   5.2e-08   0.00031       9     136 ..     124     253 ..     115     279 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.66
   CarS-like 127 dfvlgalllaypvkl 141
                 +f+l+ l+++   + 
  EGE27531.1  55 QFILAVLIITMLSVA 69 
                 455555555544444 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 5.2e-08
   CarS-like   9 iylllpayvanasavlvGGGtp.vdlGktlvdGrrliGdGvtyrGtvaGvlvGvlvgliqglleklsilald.ssgsvlefvilalllafGallGdavG 105
                 ++ + p ++  ++ ++         +G+++  G+r +   v+    + G+ +G++v+ +  + +   +  l+ s  s++ f+il++l  + ++lGd+  
  EGE27531.1 124 LWQMSPWWLMYVFLLVWCADSGaYFIGRKF--GKRKMAPNVSPNKSIEGLCGGLMVSGVVTVAV---GYYLQlSGMSLVLFLILSWLTVLASILGDLFE 217
                 566666666666655554433202345554..88888888888889999999998876666553...33444044578999****************** PP

   CarS-like 106 sfikrrlki.erGkpal....ildqldfvlgallla 136
                 s++krr +i + G   +    ild++d +l+a+ + 
  EGE27531.1 218 SMLKRRAGIkDSGTILPghggILDRIDSLLSAIPIF 253
                 ********934566554556699**99999998554 PP

>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.4       1.4   8.3e+03       9      30 ..      15      39 ..       8      43 .. 0.53
   2 ?   -0.0   0.2       0.2   1.2e+03      91     112 ..      65      89 ..      51     105 .. 0.54
   3 !   16.5   8.0   1.5e-06    0.0092       4     100 ..     112     200 ..     109     216 .. 0.72
   4 ?    1.5   1.4     0.067     4e+02      82     110 ..     182     210 ..     174     238 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
  SNARE_assoc  9 aaGvlf...glllgtlvtslgallG 30
                 ++ +lf    ++ +++++++g+l++
   EGE27531.1 15 VGFALFassMPIFVLPLLAIGVLIA 39
                 2222333433444777777777776 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.2
  SNARE_assoc  91 ltrvsf...krFflatfiGsipwal 112
                  +++v +   + F +a  +G+ + a+
   EGE27531.1  65 MLSVALpwtWVFWWAVSLGIWVMAT 89 
                  3333332124444444444444333 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 1.5e-06
  SNARE_assoc   4 evllvaaGvlfglll....gtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaGltrvsfk 97 
                   +l++a  +++gl+      +++++l + +++s ay++gr++g++++   +  +k ++ l   +   g++++            +v+y + l+++s+ 
   EGE27531.1 112 VILTAAITAMYGLWQmspwWLMYVFLLVWCADSGAYFIGRKFGKRKMAPNVSPNKSIEGLCGGLMVSGVVTV------------AVGYYLQLSGMSLV 197
                  47789999*****9999999***********************88888877777777665555534444444............44444444444444 PP

  SNARE_assoc  98 rFf 100
                   F+
   EGE27531.1 198 LFL 200
                  444 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.067
  SNARE_assoc  82 rdlvnyvaGltrvsfkrFflatfiGsipw 110
                  + +v+y + l+++s+  F++ +++  +  
   EGE27531.1 182 TVAVGYYLQLSGMSLVLFLILSWLTVLAS 210
                  34444444444444444444444433222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 2132.67
//
Query:       EGE27532.1  [L=414]
Description: 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-39  136.0   0.6    2.4e-39  135.0   0.6    1.6  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
    6.2e-37  125.6   0.1    1.3e-36  124.6   0.1    1.6  1  DXP_redisom_C    1-deoxy-D-xylulose 5-phosphate reductoisomer
    1.3e-36  125.4   0.0    2.8e-36  124.3   0.0    1.6  1  DXPR_C           DXP reductoisomerase C-terminal domain
    0.00066   20.1   0.3     0.0065   16.9   0.0    2.5  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.6   5.4e-43   2.4e-39       1     129 []       8     135 ..       8     135 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 5.4e-43
                      EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHCHTT-SEE CS
  DXP_reductoisom   1 vviLGsTGSIGtqtLdvieenpdkfevvalaagsnvellaeqakefkpklvavadeeaaeelkealkekelktevlvGeealkelaeeeeadvv 94 
                      ++iLG+TGSIG +tL +i+++p++++++al++ s+ ++l+++a ef+p  ++  + +++++l++++++++l+t +l+G+e+l+e+a+ e +d+v
       EGE27532.1   8 LAILGATGSIGDSTLAIIRQHPNRYRIHALTGFSRADKLLALAMEFHPVKICT-SPDNYAQLSQKVTDAGLDTIILSGDEGLIEIASDEAVDTV 100
                      58**********************************************99997.56788899999999************************** PP

                      EE--SSGGGHHHHHHHHHTTSEEEE--SHHHHHHH CS
  DXP_reductoisom  95 vaaivGaaGLkptlaaikagkriaLANKEsLVvaG 129
                      vaaivGaaGL++tlaa+ agkri+LANKEsLV+aG
       EGE27532.1 101 VAAIVGAAGLSSTLAAAGAGKRILLANKESLVMAG 135
                      **********************************9 PP

>> DXP_redisom_C  1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.1   2.9e-40   1.3e-36       1      84 []     149     242 ..     149     242 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 2.9e-40
                    EEE-SHHHHHHHHHS..........GCCCCTTEEEEEEEE--GTTTTS-HHHHCT-SHHHHHS-SS----HHHHHHHHHSHHHHHHHHHHHHHC CS
  DXP_redisom_C   1 ilpvDsEhsaifqll..........keekkkevekiiltasGGpfrklkleeleevtveealkhPnWsmGkkitvdsatlmNkglEvieakllf 84 
                    ilp+DsEh+ai+q+l           ++++  ++k++ltasGG+f +++ +++++++v+ea++hPnWsmG+ki++dsat+mNkglE+iea++lf
     EGE27532.1 149 ILPIDSEHNAIYQCLpaaiqadntaIHHTSYGIKKLWLTASGGSFLDKSIKQMQNASVKEAVNHPNWSMGQKISIDSATMMNKGLELIEACHLF 242
                    79*************99998877764445689*************************************************************9 PP

>> DXPR_C  DXP reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   6.2e-40   2.8e-36       1     114 [.     274     399 ..     274     400 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 6.2e-40
                 E-SS-THHHHHHHHHTTS-...------HHHHEEEEEB---TTTTCHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTSS-TTHHHHHHHHHHH.... CS
      DXPR_C   1 LgtpDMrlpIayaLayper...gverldlaklgsltFekpdlerFpclklayealkaggtapavlnAAnEvaveaFlegkisFldIaeiieevle.... 92 
                 LgtpDM++pIa+aLayper   gv +ldl++lgsl+F +pdl++F clkla+ a++ g  a+++ln AnE+aveaFl++ki  +dIa i++++l+    
  EGE27532.1 274 LGTPDMKTPIAHALAYPERiksGVMPLDLYQLGSLKFLAPDLDKFACLKLARYAARLGTGACIALNTANEIAVEAFLAEKICLTDIAVIVKACLDdkti 372
                 8******************86559***********************************************************************9999 PP

                 .....TTT....SSHHHHHHHHHHHHH CS
      DXPR_C  93 .....seekseaksledileldaeare 114
                      +   +e   le+il++d+++r+
  EGE27532.1 373 aqdysQDFGDEVLGLERILTMDKKVRK 399
                 99886444688999***********98 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.5e-06    0.0065       2      47 ..       8      54 ..       7     108 .. 0.77
   2 ?    0.1   0.0      0.24   1.1e+03      17      84 ..     196     264 ..     187     269 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-06
                    EEEETTTSHHHHHHHHHHHCTSS.EEEEEEEESTTTTTSBHHHHSG.G CS
  Semialdhyde_dh  2 vaivGatGyvGqellrlLeehpe.velvvllsssrsaGkklaeavk.a 47
                     ai+GatG +G   l ++++hp+ + +++l++ sr a k la a++ +
      EGE27532.1  8 LAILGATGSIGDSTLAIIRQHPNrYRIHALTGFSR-ADKLLALAMEfH 54
                    59********************9677888888888.999888887751 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.24
                     HHHHCTSSEEEEEEEESTT.TTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHH CS
  Semialdhyde_dh  17 rlLeehpevelvvllsssr.saGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelap 84 
                     + +++ +++++  ++ + + s G+k++    ++ ++    +e+++  +lke +i +   p++v ++l++
      EGE27532.1 196 KSIKQMQNASVKEAVNHPNwSMGQKISIDSATMMNKGLELIEACHLFDLKEHQIQVVIHPNSVVHSLVE 264
                     566666777777777888888999999887755555555666799999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3063.49
//
Query:       EGE27533.1  [L=457]
Description: RIP metalloprotease RseP [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-75  253.8   1.0    1.9e-75  253.4   1.0    1.1  1  Peptidase_M50   Peptidase family M50
    1.5e-14   54.0   0.1    5.1e-08   33.1   0.1    2.4  2  PDZ_2           PDZ domain
    1.1e-13   50.8   0.2    1.1e-07   31.6   0.0    2.8  3  PDZ_6           PDZ domain
    1.1e-11   45.0   0.2    1.9e-06   28.1   0.1    2.5  2  PDZ             PDZ domain
    3.8e-05   23.6   0.2      0.022   14.7   0.1    2.6  2  Tricorn_PDZ     Tricorn protease PDZ domain
  ------ inclusion threshold ------
       0.02   14.6   5.8      0.021   14.5   0.1    2.7  3  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.4   1.0   6.2e-79   1.9e-75       2     248 ..      10     441 ..       9     443 .. 0.87

  Alignments for each domain:
  == domain 1  score: 253.4 bits;  conditional E-value: 6.2e-79
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50   2 filllgilvvvHElGHflvAklcgvkveefsigfGpkllsfk..kgeteYaiallpLGGyVkmageepeeelseeeakaflkkspwqrllivlAGp 95 
                    ++ +lg lv++HE+GH++vA+lcgvkv+ +sigfGpkll+++  + +++Y+ia++pLGGyVkm + ++e+   e ++ af++++p+++++iv+AGp
     EGE27533.1  10 AVCILGPLVALHEFGHYIVARLCGVKVQTYSIGFGPKLLAWTskRSGIRYQIAAIPLGGYVKMLDSRQESVADELKSVAFNHQHPLKKIAIVAAGP 105
                    57899**********************************99887899********************998888888888***************** PP

                    XXXXXXXXXXXXX................................................................................... CS
                    xxxxxxxxxxxxx................................................................................... RF
  Peptidase_M50  96 lanfilailvfvv................................................................................... 108
                    ++nf++ai +f+v                                                                                   
     EGE27533.1 106 VMNFLIAIGLFWVlfllpseqlntrigeiidnspaatsglvvgdkiisidsksvntwqqtayalaskmgesttihigvnrdgqvlqktakvlhfmq 201
                    *******************************************************99999998888888888888888888888888888888887 PP

                    .........................................................................................-EEECE. CS
                    .........................................................................................xxxxxx. RF
  Peptidase_M50 109 .........................................................................................pkkske. 114
                                                                                                             p    + 
     EGE27533.1 202 tkdsrqpndplsslgilpyqpiispvvgevlsdgagalmglktgdvftaihgepindwlsatkiiqanpetmldvtvmrqgkqvdlklmP----Rg 293
                    777777777777777777777777777777777777777777777777777777777777777777777777777766555554444432....12 PP

                    ..CTTTSCEE-SEEEC-............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    ..xxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 115 ..seeekrgviGvspkp............vkkegllealkegvektlkvvvltvkalgklitgklslktlggpisiaqlaseaaeaglssflqlla 196
                      +++   g +G++p+             + +++++ea+++++++t++++++t++a+gk+itg + +++l+gpi+ia++++ ++e g++++l+++a
     EGE27533.1 294 vkTQNGVVGQLGIRPQIdtdtlipdeyrmTIQYDVGEAFTQAIRRTYDLSIMTLDAMGKMITGLIGIENLSGPIAIADVSKTSFELGFQEVLSTAA 389
                    22445555566677766******************************************************************************* PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 197 lisvnLgilNLlPipvLDGghllfalleairrkplserkeevanlvglalll 248
                    +is++L++lNLlPipvLDGghl+f+++e+i +k ++e ++ +a ++g++ll+
     EGE27533.1 390 IISLSLAVLNLLPIPVLDGGHLVFYTYEWIMGKSMNEAVQMAAFKAGALLLF 441
                    ************************************************9998 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1   1.7e-11   5.1e-08      16      77 ..     129     191 ..     120     196 .. 0.90
   2 !   18.6   0.0     6e-07    0.0018      17      79 ..     227     288 ..     214     290 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.7e-11
                 EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHH.TS-TT-EEEEEEEETTEEEE CS
       PDZ_2  16 vlvvsVkeggPaakaglkagDvilkvdgkkvksledlislll.kkkpGdtVkltvlRdgkkkt 77 
                   + ++ +++Paa +gl  gD+i+++d+k v++ ++   +l+ k+ + +t+ + v Rdg+ ++
  EGE27533.1 129 TRIGEIIDNSPAATSGLVVGDKIISIDSKSVNTWQQTAYALAsKMGESTTIHIGVNRDGQVLQ 191
                 56778999**********************************9****************9865 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 6e-07
                 EEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEE CS
       PDZ_2  17 lvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktve 79 
                 +v +V ++g  a  glk+gDv +++ g ++ +++   +++ ++ p + + +tv+R+gk+ +++
  EGE27533.1 227 VVGEVLSDGAGALMGLKTGDVFTAIHGEPI-NDWLSATKIIQANPETMLDVTVMRQGKQVDLK 288
                 56779999999999****************.66677889999****************98876 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   3.7e-11   1.1e-07       2      52 ..     131     179 ..     130     181 .. 0.90
   2 ?   -2.6   0.0       1.7   5.2e+03      26      45 ..     186     203 ..     186     207 .. 0.81
   3 !   16.3   0.0   2.1e-06    0.0063       1      45 [.     227     269 ..     227     280 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 3.7e-11
       PDZ_6   2 VtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvl 52 
                 + +++ +sPA++ Gl vGD i+s++ ++v   + ++ a +l+++ ges+++
  EGE27533.1 131 IGEIIDNSPAATSGLVVGDKIISIDSKSV--NTWQQTAYALASKMGESTTI 179
                 778999***********************..99999999999998888876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
       PDZ_6  26 NGqpveglsladvaallrgs 45 
                 +Gq +  +++a v + ++++
  EGE27533.1 186 DGQVL--QKTAKVLHFMQTK 203
                 79999..9999****99965 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 2.1e-06
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgs 45 
                 vV +V  ++ ++ +Gl+ GD+ +++ G+p+   +   +  +++++
  EGE27533.1 227 VVGEVLSDGAGALMGLKTGDVFTAIHGEPI--NDWLSATKIIQAN 269
                 689999************************..5555555555544 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   6.5e-10   1.9e-06      28      80 ..     129     182 ..     122     184 .. 0.87
   2 !   14.5   0.0   1.1e-05     0.034      28      80 ..     226     277 ..     207     279 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 6.5e-10
                 EEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTS.EEEEE CS
         PDZ  28 ifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskg.kvtLt 80 
                   + e+  +++a+++gl vGDkI+s++ ++v+++++++ ++a k+  + ++++ 
  EGE27533.1 129 TRIGEIIDNSPAATSGLVVGDKIISIDSKSVNTWQQTAYALASKMGEStTIHIG 182
                 67999****9**************************999999998877777665 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.1e-05
                 EEEEEECTTSHHHHHTSSTTEEEEEETTEETTTS.HHHHHHHHHHTTTSEEEEE CS
         PDZ  28 ifvsevlpggaaeadglkvGDkIlsvNgvdvenv.sheeavqaikgskgkvtLt 80 
                  +v evl +ga +  glk GD+ +++ g++++++ s ++++qa+ ++   + +t
  EGE27533.1 226 PVVGEVLSDGAGALMGLKTGDVFTAIHGEPINDWlSATKIIQANPET--MLDVT 277
                 6899******************************6666666666555..45555 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   7.3e-06     0.022      30      77 ..     137     182 ..     130     196 .. 0.85
   2 !    6.2   0.0    0.0033       9.8      40      81 ..     242     283 ..     236     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.3e-06
                  B-GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE CS
  Tricorn_PDZ  30 rSPLaepGvnvreGdlilavdgepvskekgiaelLvgkagkeveLtvk 77 
                  +SP a++G+   +Gd i+++d ++v++ ++ a++L++k g+++++++ 
   EGE27533.1 137 NSPAATSGLV--VGDKIISIDSKSVNTWQQTAYALASKMGESTTIHIG 182
                  6999999999..7**************************987777654 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0033
                  -.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-STT CS
  Tricorn_PDZ  40 vreGdlilavdgepvskekgiaelLvgkagkeveLtvkrkdg 81 
                  +++Gd+ +a+ gep++   +  +++  + +++  +tv r+++
   EGE27533.1 242 LKTGDVFTAIHGEPINDWLSATKIIQANPETMLDVTVMRQGK 283
                  459**************9999999999999999999988664 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   7.1e-06     0.021      25      74 ..      18      69 ..       9      71 .. 0.77
   2 ?    2.2   0.0     0.039   1.2e+02      62      89 ..      93     120 ..      86     127 .. 0.86
   3 ?   -2.2   0.7      0.87   2.6e+03     141     141 ..     435     435 ..     381     456 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.1e-06
  Peptidase_M50B 25 vffHElGHalaalLtGgrvkgielhsdesGvtvtrgpgglg..qiltllaGY 74
                    v +HE+GH ++a L+G +v++ ++    + +++t+ ++g++   +++ l+GY
      EGE27533.1 18 VALHEFGHYIVARLCGVKVQTYSIGFGPKLLAWTSKRSGIRyqIAAIPLGGY 69
                    789*****************99998888888888776665411233445666 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.039
  Peptidase_M50B  62 gglgqiltllaGYlgpallGlllillsa 89 
                     + l++i++++aG+++  l+ ++l+++++
      EGE27533.1  93 HPLKKIAIVAAGPVMNFLIAIGLFWVLF 120
                     567899****************999875 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.87
  Peptidase_M50B 141 f 141
                     +
      EGE27533.1 435 A 435
                     1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3483.77
//
Query:       EGE27534.1  [L=813]
Description: outer membrane protein assembly complex protein YaeT [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-63  213.8  13.7    7.4e-63  213.0  13.7    1.4  1  Bac_surface_Ag  Surface antigen
    4.9e-53  177.6  14.0    1.5e-14   54.4   0.1    5.7  5  POTRA           Surface antigen variable number repeat
    4.2e-11   42.5   7.6    1.9e-06   27.6   0.2    5.1  5  POTRA_2         POTRA domain, ShlB-type
     0.0062   15.4   0.3       0.54    9.0   0.0    2.4  2  YqfD            Putative stage IV sporulation protein YqfD
  ------ inclusion threshold ------
       0.03   14.6   4.1        1.5    9.2   0.1    4.4  5  POTRA_1         POTRA domain, FtsQ-type


Domain annotation for each model (and alignments):
>> Bac_surface_Ag  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.0  13.7   2.1e-66   7.4e-63       1     324 []     454     813 .]     454     813 .] 0.93

  Alignments for each domain:
  == domain 1  score: 213.0 bits;  conditional E-value: 2.1e-66
                     STSSSS-EEEEEEEESSSEEEEEEEEEESTSSTTS-EEEEEEEEEE..GGGTBS.S-EEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEES---B CS
  Bac_surface_Ag   1 NllGtGqslslsaslgsyeqslnlsftePyflgdrvslglslfare..sdsdesdsyrtksvgfsvslgrpltenyslslglsvqknkilkdsss 93 
                     N+ GtG+ +++s+s+++ +  ++l+ t+Pyf+ ++vs +ls ++r+  +d++++++y  +s+g+s+s+g+p++en+++s+gl+ +++k+   +  
      EGE27534.1 454 NFMGTGKHVNASFSRSETREVYSLGMTNPYFTVNGVSQSLSGYYRKtkYDNKNISNYVLDSYGGSLSYGYPIDENQRISFGLNADNTKLHGGRFM 548
                     9*********************************************999999999*********************************9999888 PP

                     HHHHHHHH...........S..CS--EEEEEEEEEEEEEEEEEESSSSS-SSEEEEEEEEEEE-..TTSSS-EEEEEEEEEEEEESSTTSSSEEE CS
  Bac_surface_Ag  94 ennrnvss...........a..sklqtgksltsslslslsydtrddalfPtrGvllklrleftgpllggdvsylkldakasyyvpltkekdlvla 175
                       + nv +                + +++++t    l+++y+++d+++fPt+G+  ++ l+++    +gd ++ k+ ++++ y p+   k+ vl+
      EGE27534.1 549 G-ISNVKQlmadggkiqvdNngIPDFKHDYTTYNAILGWNYSSLDRPVFPTQGMSHSVDLTVG----FGDKTHQKVVYQGNIYRPFI--KKSVLR 636
                     8.4446668889998876516788999***************************987766655....69******************..689999 PP

                     EEEEEEEEEESSSS-.--GGG-B-BSSTTSSTEE-TT-BS-EEE............EEEE--BSEEEEEEEEEEEE-SSS-.GGTTEEEEEEEEE CS
  Bac_surface_Ag 176 arvalgyisgygtkdelpfyerFyaGGsnsvRGfesgglgprde............sgdalGGdsyavaslElrfplpflk.kqnsvrlalFfDa 257
                        +lgy     + ++lpfye+FyaGG++svRG+   +lgpr+              g+ +GG+++a+++ El+ plpf     ++vr ++F+  
      EGE27534.1 637 GYAKLGY-----G-NNLPFYENFYAGGYGSVRGYDQSSLGPRSQayltarrgqqttLGEVVGGNALATFGSELILPLPFKGdWIDQVRPVIFIEG 725
                     9999999.....3.35**************************************999***********************974558********* PP

                     EEEE-TT--TTTTTTS--TT......................TS-EEEEEEEEEEEETTEEEEEEEEEEEE-STT--EESEEEEECEEE CS
  Bac_surface_Ag 258 Gnvwdkegqspsssrsasst......................aeirasvGvgLrwqsPlGPlrfdyAiplkkedgdktqrFqFgiGttF 324
                     G v+d++g +++  + +++                       +++r+s+Gvg +w +P+GPl+++yA+pl+k+++d+t++ qF+iG  F
      EGE27534.1 726 GQVFDTTGMDKQTID-LTQFkdpqataeqnakaanrplltqdKQLRYSAGVGATWYTPIGPLSISYAKPLNKKQNDQTDTVQFQIGSVF 813
                     ********9999665.5555799***************************************************************866 PP

>> POTRA  Surface antigen variable number repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.6e-06     0.013       4      79 ..      34      97 ..      32      98 .. 0.90
   2 !   33.1   0.0   1.7e-11   6.1e-08       3      80 .]     101     179 ..      99     179 .. 0.95
   3 !   43.8   0.8   8.2e-15   2.9e-11       2      80 .]     183     269 ..     182     269 .. 0.92
   4 !   36.0   0.2   2.2e-12     8e-09       1      78 [.     272     348 ..     272     349 .. 0.94
   5 !   54.4   0.1   4.1e-18   1.5e-14       1      80 []     353     427 ..     353     427 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.6e-06
                EEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEEHSSTTSEEEEEEEEEEEE CS
       POTRA  4 kkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvelpeddedknrvdltinvdE 79
                ++i ++G ++++ e l+++l+++ g+v ++++l + ++    +++++G f+ +Vqv       +++r  +++ v+E
  EGE27534.1 34 NDIAITGLQRVTIESLQSVLPFRLGQVVSEAQLADGVK----ALYATGNFS-DVQVYH-----QEGR--IIYQVTE 97
                5899***99*****************************....*********.**9954.....4443..9999988 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.7e-11
                 EEEEEEES.SSS-HHHHHTTT...SSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   3 ikkinfeGnkktkdeelrrel...elkegdvynpekleadkealksryanlGyfdasVqvelpeddedknrvdltinvdEg 80 
                 i++infeGn+ +++e l++ l   +l  g+++++++++  + +l+++y ++Gy++ +++v++  +  d nrv+l++++ Eg
  EGE27534.1 101 IAEINFEGNRLIPKEGLQEGLknaGLAVGQPLKQATVQMIETELTNQYISQGYYNTEITVKQ--TMLDGNRVKLDMTFAEG 179
                 89*******************99899********************************9988..789999999****9998 PP

  == domain 3  score: 43.8 bits;  conditional E-value: 8.2e-15
                 EEEEEEEES.SSS-HHHHHTTTSSSTT........SBHCHHHHHHHHHHHHHHHHCTT-EE.EE...EEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   2 kikkinfeGnkktkdeelrrelelkeg........dvynpekleadkealksryanlGyfdasV...qvelpeddedknrvdltinvdEg 80 
                 ++ +in++Gn++++d +l ++l +k +        d y++ekl +++e+l+ +y+n G++ +++   + ++   +edknr+ ++i+++Eg
  EGE27534.1 183 RVVDINIIGNQHFSDADLIDVLAIKDNkinplskaDRYTQEKLVTSLENLRAKYLNAGFVRFEIkdaKLNI---NEDKNRIFVEISLHEG 269
                 6789******************9988888888888*****************************9665555...**************98 PP

  == domain 4  score: 36.0 bits;  conditional E-value: 2.2e-12
                 EEEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EE..EEEEHSSTTSEEEEEEEEEEE CS
       POTRA   1 vkikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasV..qvelpeddedknrvdltinvd 78 
                 +++++ +f Gn  +++ el+++l++k  + +++++le++ ++++ + ++ Gy+ a++  ++++   +++  +vd+++++d
  EGE27534.1 272 YRFGQTQFLGNLTYTQAELEALLKFKAEEGFSQAMLEQTTNNISTKFGDDGYYYAQIrpVTRI---NDESRTVDVEYYID 348
                 78999**************************************************99865555...999999******98 PP

  == domain 5  score: 54.4 bits;  conditional E-value: 4.1e-18
                 EEEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEE...HSSTTSEEEEEEEEEEEE- CS
       POTRA   1 vkikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvel...peddedknrvdltinvdEg 80 
                 v++++inf+Gn kt de+lrre++  eg + + +k++ ++     r++++G+f+ +V+v++   p++++++   d++++v+E+
  EGE27534.1 353 VYVRRINFTGNFKTQDEVLRREMRQLEGALASNQKIQLSRA----RLMRTGFFK-HVTVDTrpvPNSPDQV---DVNFVVEEQ 427
                 69***************************************....*********.**99886455555555...5******95 PP

>> POTRA_2  POTRA domain, ShlB-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.27   9.6e+02       4      43 ..      34      73 ..      31      76 .. 0.87
   2 !   27.6   0.2   5.4e-10   1.9e-06       3      72 ..     101     173 ..     100     176 .. 0.89
   3 ?   -0.5   0.0       0.3   1.1e+03      32      53 ..     221     242 ..     184     246 .. 0.68
   4 !    8.5   0.1   0.00049       1.8       7      57 ..     278     328 ..     275     338 .. 0.91
   5 !    5.7   0.0    0.0035        13       3      43 ..     355     395 ..     353     398 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.27
                SEEEEESGCCSSHCCHHHHHCCCSSSEEEHHHHHHHHHHH CS
     POTRA_2  4 kkielegntllsleeleallqpylgkclgladlnqlakel 43
                ++i ++g ++++ e l+++l   lg+ ++ a+l   +k+l
  EGE27534.1 34 NDIAITGLQRVTIESLQSVLPFRLGQVVSEAQLADGVKAL 73
                67889999999999999999999*********99988876 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 5.4e-10
                 .SEEEEESGCCSSHCCHHHHHCC...CSSSEEEHHHHHHHHHHHHHHHHHTT-TT-EEEEEECCEETTEEEEE CS
     POTRA_2   3 ikkielegntllsleeleallqp...ylgkclgladlnqlakeltnayiekGYvtsrvllppqdlesGtlklk 72 
                 i +i++egn+l+++e l++ l++   ++g++l++a ++ + +eltn+yi++GY  + +++++  l +  +kl 
  EGE27534.1 101 IAEINFEGNRLIPKEGLQEGLKNaglAVGQPLKQATVQMIETELTNQYISQGYYNTEITVKQTMLDGNRVKLD 173
                 679****************999944459********************************9887777778886 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.3
                 EHHHHHHHHHHHHHHHHHTT-T CS
     POTRA_2  32 gladlnqlakeltnayiekGYv 53 
                 +++ l   + +l ++y+++G+v
  EGE27534.1 221 TQEKLVTSLENLRAKYLNAGFV 242
                 4555666667777777777776 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.00049
                 EEESGCCSSHCCHHHHHCCCSSSEEEHHHHHHHHHHHHHHHHHTT-TT-EE CS
     POTRA_2   7 elegntllsleeleallqpylgkclgladlnqlakeltnayiekGYvtsrv 57 
                 ++ gn  ++++eleall+    +  ++a l+q +++++ +  ++GY  +++
  EGE27534.1 278 QFLGNLTYTQAELEALLKFKAEEGFSQAMLEQTTNNISTKFGDDGYYYAQI 328
                 5668888999************************************98876 PP

  == domain 5  score: 5.7 bits;  conditional E-value: 0.0035
                 .SEEEEESGCCSSHCCHHHHHCCCSSSEEEHHHHHHHHHHH CS
     POTRA_2   3 ikkielegntllsleeleallqpylgkclgladlnqlakel 43 
                 +++i+++gn+  ++e l++ +++++g   + + ++  +++l
  EGE27534.1 355 VRRINFTGNFKTQDEVLRREMRQLEGALASNQKIQLSRARL 395
                 799************************99999998877776 PP

>> YqfD  Putative stage IV sporulation protein YqfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00015      0.54     103     150 ..     101     148 ..      99     161 .. 0.92
   2 !    4.0   0.1    0.0051        18     103     168 ..     184     254 ..     181     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00015
        YqfD 103 iwsievegnekvseeeilkaleeeGikpGalkksidleeiekkllekl 150
                 i +i+ egn+ +++e + + l+++G+ +G+  k+  ++ ie +l++++
  EGE27534.1 101 IAEINFEGNRLIPKEGLQEGLKNAGLAVGQPLKQATVQMIETELTNQY 148
                 7789*****************************************997 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0051
        YqfD 103 iwsievegnekvseeeilkal..eeeGikpGalkksidleeie...kklleklpeiaWvgveikGtrlive 168
                 + +i++ gn++ s+++++++l  +++ i+p  +  ++ +e++    ++l++k+ +  +v+ eik  +l+++
  EGE27534.1 184 VVDINIIGNQHFSDADLIDVLaiKDNKINPLSKADRYTQEKLVtslENLRAKYLNAGFVRFEIKDAKLNIN 254
                 899****************87447999**********9999972224566777888888888888877775 PP

>> POTRA_1  POTRA domain, FtsQ-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.39   1.4e+03       4      24 ..      34      54 ..      31      64 .. 0.83
   2 ?    0.9   0.0      0.16   5.8e+02       3      38 ..     101     139 ..     100     149 .. 0.71
   3 ?    9.2   0.1   0.00041       1.5       3      29 ..     184     210 ..     182     227 .. 0.82
   4 ?   -2.4   0.0       1.7   6.2e+03      10      42 ..     281     313 ..     278     317 .. 0.74
   5 ?    1.2   0.0      0.13   4.6e+02       3      57 ..     355     409 ..     354     421 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.39
                -EEEEES-SS--HHHHHHHHH CS
     POTRA_1  4 kqvevsGnkhlsseeiikalg 24
                +++ ++G ++++ e ++ +l 
  EGE27534.1 34 NDIAITGLQRVTIESLQSVLP 54
                689*********999998775 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.16
                 X-EEEEES-SS--HHHHHHHHHTTS...TT-GGGS-HHH CS
     POTRA_1   3 ikqvevsGnkhlsseeiikalgiek...gtslfsldlea 38 
                 i++++++Gn+ +++e +++ l+  +   g++l +  ++ 
  EGE27534.1 101 IAEINFEGNRLIPKEGLQEGLKNAGlavGQPLKQATVQM 139
                 789************999876655544466655555555 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00041
                 X-EEEEES-SS--HHHHHHHHHTTSTT CS
     POTRA_1   3 ikqvevsGnkhlsseeiikalgiekgt 29 
                 + ++++ Gn+h s++++i++l+i++++
  EGE27534.1 184 VVDINIIGNQHFSDADLIDVLAIKDNK 210
                 5689*******************9854 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.7
                 S-SS--HHHHHHHHHTTSTT-GGGS-HHHHHHH CS
     POTRA_1  10 Gnkhlsseeiikalgiekgtslfsldleaieqr 42 
                 Gn + +++e+++ l+ + ++ + +  le+  ++
  EGE27534.1 281 GNLTYTQAELEALLKFKAEEGFSQAMLEQTTNN 313
                 888999999999999999777766666655555 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.13
                 X-EEEEES-SS--HHHHHHHHHTTSTT-GGGS-HHHHHHHHHH-TTEEEEEEEEE CS
     POTRA_1   3 ikqvevsGnkhlsseeiikalgiekgtslfsldleaieqrleklpwvksasVrrq 57 
                 ++ ++++Gn  +++e ++++++  +g     ++++  ++rl++    k+++V  +
  EGE27534.1 355 VRRINFTGNFKTQDEVLRREMRQLEGALASNQKIQLSRARLMRTGFFKHVTVDTR 409
                 6899**************9999999988889999999999998888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5517.19
//
Query:       EGE27535.1  [L=337]
Description: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-25   87.2  45.4    2.1e-06   27.2   8.6    5.7  5  Hexapep     Bacterial transferase hexapeptide (six repeats)
    1.9e-16   59.6   0.3    3.2e-16   58.8   0.3    1.4  1  LpxD        UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr
    5.6e-07   29.2  45.7    0.00032   20.4   9.1    5.8  6  Hexapep_2   Hexapeptide repeat of succinyl-transferase
  ------ inclusion threshold ------
      0.041   12.8   7.7       0.17   10.8   1.3    2.4  2  Fucokinase  L-fucokinase
        3.3    5.7  12.3        3.5    5.6   1.2    2.4  2  DUF4954     Domain of unknown function (DUF4954)


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   8.6   5.9e-10   2.1e-06       1      35 [.     116     150 ..     116     151 .. 0.96
   2 !   27.0   0.6   6.7e-10   2.4e-06       2      35 ..     153     186 ..     152     187 .. 0.96
   3 !   13.2   0.8   1.5e-05     0.055      14      30 ..     212     228 ..     207     231 .. 0.54
   4 !   22.6   5.5   1.7e-08   6.1e-05       1      36 []     233     268 ..     233     268 .. 0.96
   5 !   18.9   0.9   2.5e-07   0.00091       1      34 [.     269     302 ..     269     304 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 5.9e-10
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 s+vIG+ v Ig++avig+ V++ d+v++gagv ig
  EGE27535.1 116 SAVIGNQVSIGANAVIGEKVVLADGVVVGAGVIIG 150
                 68*******************************98 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 6.7e-10
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 t+IG +++I++ +vi+++++IG+ ++I++++ ig
  EGE27535.1 153 TQIGAGSQIDAATVIHHDCIIGEQTRIHSHANIG 186
                 89*****************************997 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 1.5e-05
                 EEEETTEEE-TTEEEET CS
     Hexapep  14 aviggnVkIGdnvkIga 30 
                 ++ig++V IG++++I +
  EGE27535.1 212 VIIGNHVRIGSHTCIDR 228
                 45555555555555555 PP

  == domain 4  score: 22.6 bits;  conditional E-value: 1.7e-08
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 +tvI ++v+I++ ++i++nV+IG ++ I+a+++i+g
  EGE27535.1 233 DTVISDDVIIDNLVQIAHNVHIGCGTAIAANCGIAG 268
                 69********************************86 PP

  == domain 5  score: 18.9 bits;  conditional E-value: 2.5e-07
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 st+IG+n+lIg  + i g+ +I d+v+I + + +
  EGE27535.1 269 STKIGKNCLIGGAVGISGHLTITDDVTITSMSMV 302
                 79**************************887766 PP

>> LpxD  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.3   8.9e-20   3.2e-16       2      69 ..      27      97 ..      26      98 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 8.9e-20
                -EEEEEE-CCC--TTCEEEE-SCCCGGGCCC---SEEEEEHHHHCCHTTSCS....EESS-HHHHHHHHHH CS
        LpxD  2 leItgvapleeAgpgdlsFlanpkylkqlattkAgavivppdlaealpanaal...ivvenPylafakllq 69
                ++Itgva l  A++++++Fla +kyl++l++t+Ag+v++++++ +++++       ++v+++yla+a +++
  EGE27535.1 27 IKITGVANLSAATKHQVAFLAKAKYLDELNQTNAGVVLLSEQFINEARTINPKclyVLVKDAYLAYACVST 97
                79*****************************************999875544489************9876 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   9.1   8.9e-08   0.00032       3      33 ..     118     150 ..     117     151 .. 0.95
   2 !    9.9   1.7   0.00017      0.62       2      27 ..     147     174 ..     146     175 .. 0.89
   3 ?    1.0   0.2       0.1   3.6e+02       3      17 ..     172     186 ..     170     186 .. 0.82
   4 !    7.6   3.0   0.00088       3.1       2      28 ..     212     244 ..     211     246 .. 0.84
   5 ?   -0.2   2.7      0.24   8.7e+02       1      17 [.     251     268 ..     251     270 .. 0.85
   6 !   16.8   2.4   1.2e-06    0.0044       2      26 ..     270     296 ..     269     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 8.9e-08
                 EE-TT-EE-TT-EES..EEE-TT-EE-TT-EE- CS
   Hexapep_2   3 iIGdnCliGanagiG..vslGdncvvgaGvvit 33 
                  IG+ + iGana+iG  v l d++vvgaGv+i 
  EGE27535.1 118 VIGNQVSIGANAVIGekVVLADGVVVGAGVIIG 150
                 69*****************************96 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00017
                 EEE-TT-EE-TT-EES..EEE-TT-EE- CS
   Hexapep_2   2 viIGdnCliGanagiG..vslGdncvvg 27 
                 viIG+++ iGa + i   + +  +c++g
  EGE27535.1 147 VIIGERTQIGAGSQIDaaTVIHHDCIIG 174
                 9*************95559999999997 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.1
                 EE-TT-EE-TT-EES CS
   Hexapep_2   3 iIGdnCliGanagiG 17 
                 iIG+ + i++ a iG
  EGE27535.1 172 IIGEQTRIHSHANIG 186
                 799999999988776 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.00088
                 EEE-TT-EE-TT-EE..S....EEE-TT-EE-T CS
   Hexapep_2   2 viIGdnCliGanagi..G....vslGdncvvga 28 
                 viIG+ + iG+  +i  G    + + d++++++
  EGE27535.1 212 VIIGNHVRIGSHTCIdrGavddTVISDDVIIDN 244
                 9***********8887744445********987 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.24
                 .EEE-TT-EE-TT-EE.S CS
   Hexapep_2   1 pviIGdnCliGanagi.G 17 
                 +v+IG  + i an+gi G
  EGE27535.1 251 NVHIGCGTAIAANCGIaG 268
                 589999999999999866 PP

  == domain 6  score: 16.8 bits;  conditional E-value: 1.2e-06
                 EEE-TT-EE-TT-EE.S.EEE-TT-EE CS
   Hexapep_2   2 viIGdnCliGanagi.G.vslGdncvv 26 
                 ++IG+nCliG   gi G  ++ d++++
  EGE27535.1 270 TKIGKNCLIGGAVGIsGhLTITDDVTI 296
                 79*************889999999988 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.4    0.0021       7.7     274     333 ..     124     182 ..      86     193 .. 0.59
   2 ?   10.8   1.3   4.8e-05      0.17     281     336 ..     248     302 ..     217     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0021
  Fucokinase 274 avvinSvlessvsvgegsviehsslk.gnvsigsnsivsglelesseeslelpddtilqtl 333
                 ++ +n+v+ ++v +++g v+    +  ++++ig++s +    + ++  ++ + ++t ++++
  EGE27535.1 124 SIGANAVIGEKVVLADGVVVGAGVIIgERTQIGAGSQIDAATVIHH--DCIIGEQTRIHSH 182
                 2224556666666666666665555445555666666666666655..3466666666665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.8e-05
  Fucokinase 281 lessvsvg.egsviehsslkgnvsigsnsivsglelesseeslelpddtilqtlslk 336
                 ++++v++g  +++  ++ + g+++ig+n+++ g    s+  +l++ dd+ + ++s++
  EGE27535.1 248 IAHNVHIGcGTAIAANCGIAGSTKIGKNCLIGGAVGISG--HLTITDDVTITSMSMV 302
                 558888885566777******************999998..789****999998876 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.9     0.001       3.8     194     258 ..     114     183 ..     103     202 .. 0.66
   2 ?    5.6   1.2   0.00097       3.5      57     102 ..     217     262 ..     204     281 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.001
     DUF4954 194 gdyatiegasklengtinSsk...eapveiGegViled.fiissGskikdgavis.rcfvGqavklkkqf 258
                  d a+i +  ++   +++ +k   ++ v +G gVi+ + + i +Gs+i  ++vi+ +c++G+ ++++ ++
  EGE27535.1 114 ADSAVIGNQVSIGANAVIGEKvvlADGVVVGAGVIIGErTQIGAGSQIDAATVIHhDCIIGEQTRIHSHA 183
                 4444444444444444444431223567889998875426799999999998886269999999987765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.00097
     DUF4954  57 egglkkksglynatlinceigdnvlienvknyianYeigdeviien 102
                 +  +  ++ + +  + ++ i d+v+i+n+ ++  n +ig +++i  
  EGE27535.1 217 HVRIGSHTCIDRGAVDDTVISDDVIIDNLVQIAHNVHIGCGTAIAA 262
                 55677899999******************9***********99963 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2451.52
//
Query:       EGE27536.1  [L=175]
Description: (3R)-hydroxymyristoyl-ACP dehydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-31  106.7   0.0    8.7e-31  106.4   0.0    1.1  1  FabA             FabA-like domain
  ------ inclusion threshold ------
      0.084   12.4   0.0       0.12   12.0   0.0    1.3  1  MaoC_dehydratas  MaoC like domain


Domain annotation for each model (and alignments):
>> FabA  FabA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   9.7e-35   8.7e-31       1     137 [.      37     162 ..      37     163 .. 0.94

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 9.7e-35
                 ---TT.T---SEEEEEESTCTCTSS.EEEEEEE--TTSHHHHHSSTTS----HHHHHHHHHHHHHHHHHHCC---SCCEEE-EEEEEEECEEEE-S--- CS
        FabA   1 lpark.lllldrvleieeeggkfgkGlivaekdvtpnewfFqgHFpgdPvmPGvLgleamaQlvgfyllksggdegkgrarklvlfagvdevkfrgqvt 98 
                 lp+r+ + l+drv++++ +++      i+++k++++ne  F+gHFp++P+mPGvL +eamaQl+g++ + s g++  +    l+lfagvd+v+f++ vt
  EGE27536.1  37 LPHRYpFMLIDRVTACK-PNEW-----ITGYKNISINEELFNGHFPDNPIMPGVLQVEAMAQLSGILGFISAGQTADD--GYLYLFAGVDKVRFKKVVT 127
                 8****************.8888.....******************************************998855555..4579*************** PP

                 TT-.EEEEEEEEEEEEECCTCEEEEEEEEEETTEEEEEE CS
        FabA  99 Pgdkklvleveikkvseekrviiiadaellvdgklvyea 137
                  gd +lv++ ++     +kr i ++++++ vdg+l ++a
  EGE27536.1 128 SGD-QLVIRSKVLM---NKRDIYKFECTAHVDGQLTCSA 162
                 ***.*****99999...*****************98877 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.3e-05      0.12      74     105 ..     111     143 ..      87     157 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.3e-05
                      EGGGEEEEEEEE-S--BTTCEEEEEEEEEE.EE CS
  MaoC_dehydratas  74 vvarvgeikvrFtkpVlpgdtlkvelevvg.kr 105
                         + g +kvrF k+V  gd+l  + +v   kr
       EGE27536.1 111 LYLFAGVDKVRFKKVVTSGDQLVIRSKVLMnKR 143
                      4567899****************9998765344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1375.99
//
Query:       EGE27537.1  [L=257]
Description: UDP-N-acetylglucosamine acyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-26   90.9   0.0    1.4e-25   89.6   0.0    1.7  2  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
    2.2e-24   84.2  17.7      1e-06   28.2   3.0    5.4  5  Hexapep          Bacterial transferase hexapeptide (six repea
  ------ inclusion threshold ------
       0.21   11.4  13.9       0.55   10.0   0.9    4.3  3  Hexapep_2        Hexapeptide repeat of succinyl-transferase
       0.23   10.3   0.0       0.27   10.1   0.0    1.1  1  5_nucleotid      5' nucleotidase family


Domain annotation for each model (and alignments):
>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         2   8.8e+03       4      12 ..      23      31 ..      21      36 .. 0.78
   2 !   89.6   0.0   3.1e-29   1.4e-25       1      82 []     175     256 ..     175     256 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2
                     TTEEEETTT CS
  Acetyltransf_11  4 Pfvlvagnp 12
                     P+++v +n 
       EGE27537.1 23 PYCIVGKNS 31
                     9***99864 PP

  == domain 2  score: 89.6 bits;  conditional E-value: 3.1e-29
                      BB-TTEEEETTTTEEEEE-HHHHHHTT--HHHHHHHHHHHHHHHSSSS-HHHHHHHHHHHTTTSCCHHHHHHHHHH-SS-B- CS
  Acetyltransf_11   1 DVpPfvlvagnparlrglNlvgLkRrgfseeeikalkkayrllyrsglsleealeeleeeaeespevqelldFieaskRGii 82 
                      DV  +v+++gnpa+++glN +g++R+g+s+++ikal +ayrl++rsgl  +eal+el + +e++p++q l+d+i++skRG++
       EGE27537.1 175 DVAAYVMASGNPAKAHGLNKEGMRRKGWSKDTIKALDEAYRLVFRSGLLRDEALDELTKLVEKEPKIQLLIDSINNSKRGLV 256
                      9*******************************************************************************85 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   8.9e-07     0.004       3      31 ..       2      30 ..       1      31 [. 0.92
   2 !   26.5   1.1   8.1e-10   3.6e-06       2      29 ..      25      52 ..      24      54 .. 0.96
   3 !   10.2   0.0   0.00011      0.51       2      35 ..      61      94 ..      60      95 .. 0.93
   4 !   28.2   3.0   2.2e-10     1e-06       2      36 .]     104     138 ..     103     138 .. 0.96
   5 !   15.3   1.1   2.7e-06     0.012       1      30 [.     139     168 ..     139     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.9e-07
                EEETTEEE-TTEEEETTEEE-TTEEEETT CS
     Hexapep  3 vIGsnvlIgpfaviggnVkIGdnvkIgag 31
                +I+  ++I++ a+i++ ++IG+++++g +
  EGE27537.1  2 TIHPTAIIDKSAMIADSAIIGPYCIVGKN 30
                689999********************977 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 8.1e-10
                EEEETTEEE-TTEEEETTEEE-TTEEEE CS
     Hexapep  2 tvIGsnvlIgpfaviggnVkIGdnvkIg 29
                +++G+n++Ig+ +v++++V++G+n+kIg
  EGE27537.1 25 CIVGKNSQIGAHTVLRSHVIVGENTKIG 52
                89*************************9 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00011
                EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35
                + IG+n +  ++a      +IGd+ +I + ++i+
  EGE27537.1 61 ASIGENPQDLKYAGEQTYLEIGDHNRIREACTIH 94
                67**************************999997 PP

  == domain 4  score: 28.2 bits;  conditional E-value: 2.2e-10
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 t+IG+ +l++ +++i++++++Gd+ +++++v+++g
  EGE27537.1 104 TRIGNQNLLMVNVHIAHDCVVGDDNVLANNVGVAG 138
                 78******************************986 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 2.7e-06
                 TEEEETTEEE-TTEEEETTEEE-TTEEEET CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIga 30 
                 +++IG++v+Ig  + ++  + I d++ +g 
  EGE27537.1 139 HAHIGNHVIIGGQSGVHQFCRIDDYSMVGG 168
                 689************************997 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.9   0.00012      0.55       3      29 ..      20      48 ..      18      52 .. 0.62
   2 ?    1.4   1.2     0.061   2.7e+02      20      30 ..     124     134 ..     113     136 .. 0.85
   3 ?    5.7   0.3    0.0027        12       3      16 ..     141     154 ..     139     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
                EE-TT-EE-TT-EES..EEE-TT-EE-TT CS
   Hexapep_2  3 iIGdnCliGanagiG..vslGdncvvgaG 29
                iIG  C++G+n+ iG  + l+  ++vg +
  EGE27537.1 20 IIGPYCIVGKNSQIGahTVLRSHVIVGEN 48
                67777888888888777555555555433 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.061
                 E-TT-EE-TT- CS
   Hexapep_2  20 lGdncvvgaGv 30 
                 +Gd+ v++++v
  EGE27537.1 124 VGDDNVLANNV 134
                 89999999998 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0027
                 EE-TT-EE-TT-EE CS
   Hexapep_2   3 iIGdnCliGanagi 16 
                 +IG+ ++iG  +g+
  EGE27537.1 141 HIGNHVIIGGQSGV 154
                 8*********9996 PP

>> 5_nucleotid  5' nucleotidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0     6e-05      0.27     159     206 ..     206     253 ..     155     256 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6e-05
                  HHHHHHHHHHHHHHHSHHHHHHHTTHHHHEE--HHHHHHHHHHHHTT- CS
  5_nucleotid 159 lykdvreavdlvHrdgslkkevledlekyiekdpelvelLerlreagk 206
                    k + ea +lv+r+g l++e l++l k +ek+p+++ l+++++++++
   EGE27537.1 206 TIKALDEAYRLVFRSGLLRDEALDELTKLVEKEPKIQLLIDSINNSKR 253
                  567789999********************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2054.25
//
Query:       EGE27538.1  [L=495]
Description: SNF family sodium-dependent transporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-108  363.0  44.6    9.2e-70  235.8  28.0    2.0  2  SNF       Sodium:neurotransmitter symporter family
  ------ inclusion threshold ------
      0.041   12.4   0.4      0.098   11.2   0.4    1.6  1  FUSC      Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> SNF  Sodium:neurotransmitter symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   8.8   1.2e-42   1.1e-38       1     115 [.       5     119 ..       5     132 .. 0.96
   2 !  235.8  28.0     1e-73   9.2e-70     158     512 ..     128     481 ..     122     489 .. 0.89

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 1.2e-42
         SNF   1 RetwskkldfilsvvGfavgLgnvWRFPYlcyknGGGafliPYlilllvaGiPlfflelalGqytreGaitvwrkicPllkgiGyasivvalyvglyYn 99 
                 Re+ws +  fil+++G+avgLgn+WRFPY++y+nGGGaf++PYli+l +aG Pl+fl++ +Gq ++    t++r++    +giG++++ v++++g+yY+
  EGE27538.1   5 RESWSARSGFILAAIGSAVGLGNIWRFPYVSYENGGGAFFLPYLIALATAGFPLLFLDYVMGQKYKGAPPTAYRRFIKSAEGIGWWQVAVCTIIGIYYA 103
                 89************************************************************************************************* PP

         SNF 100 vilawalfYlfssftt 115
                  +l+wa  Y++ ++ +
  EGE27538.1 104 SVLSWAGNYTLFAVGQ 119
                 *********9887766 PP

  == domain 2  score: 235.8 bits;  conditional E-value: 1e-73
         SNF 158 fwerevlklsssi..eelGelrweltlcllvawvvvylailkGvkssgkvvyftatfPyvvllvllvrgvlLpGavkgikfyltpdlekllepkvWida 254
                 f+ ++ l+  s++    + +l + l+++++++++++y +i kGv+ s k+     +   v++ vl+ r+v+LpGa+ g++ ++ p++ek+ +pkvW +a
  EGE27538.1 128 FFFNTYLQNASELtmAYSSQLLIGLVVVWVMVLLILYGGIKKGVELSNKIFIPLLI---VMFGVLVARAVTLPGATVGLDTFFAPNWEKMADPKVWLAA 223
                 55555555554430044566677788888888888888999********9988877...9*************************************** PP

         SNF 255 atqiffslgigfGvlialasYnkfennvyrdallvslinsltsvlaglvvFsvlGfmaeeqgekisevaeeGpgLaFiaypealtklp.lsplwsvlFF 352
                 +  +ffs++igfG+++++asY k++ n++ ++l+v+++ns++++lag+ +FsvlGfma+++g+++sev + G+gLaFia+p++++++  +++l ++lFF
  EGE27538.1 224 YGHVFFSMSIGFGIMVTYASYLKRNANLTGSGLVVGFANSSFELLAGIGIFSVLGFMAQASGVPVSEVVSGGIGLAFIAFPKIISTMGdAGNLVGILFF 322
                 ************************************************************************************99953889******* PP

         SNF 353 lmlillgldsqfgtvegiitavvDefkvllrrrelltlivavlaflvglllv.tegGiyvltlldkyaaslsllvvvlleaiavawvy..glkkflddi 448
                  +l ++g++s+++++++ i+av+D+f     +++  +++v + + +++++l+ ++  i +++++d++++++++++ ++l++i v+w+   +l+ ++++i
  EGE27538.1 323 GSLFIAGVTSMVSILQVPISAVQDKFGW---SKNQSVTVVGLGSAIISITLFgSQNAITFVDVIDNFVNNIGIVFGAILSIIWVTWFNrnKLRGLINHI 418
                 ***************************9...78888888889999999988878899*****************************972256789**** PP

         SNF 449 kemlgfrpllflklcwkfvspllllvlliasivklkpltynayvyPkwae.algwllalssvlvi 512
                 + + + +++  + +++++v+p+ l+v+l  ++++l +++y    yP+ ++ ++gw +++  +++ 
  EGE27538.1 419 NAISSVKVGAIWSFMLTIVTPIALIVTLGLTLKSLLTEGYGG--YPANVQlIFGWGVIIICAILA 481
                 *****************************************9..898755167898877766554 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   1.1e-05     0.098     446     502 ..     355     412 ..     350     425 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.1e-05
        FUSC 446 rlagiglglavffalllapqnamt.ydfatflnsalAlllGvllaavvfrlirpvsae 502
                   +++glg a+  ++l++ qna+t  d+++ + +++++++G +l++++ +++     +
  EGE27538.1 355 SVTVVGLGSAIISITLFGSQNAITfVDVIDNFVNNIGIVFGAILSIIWVTWFNRNKLR 412
                 67899*******************66**********************9998665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 3785.07
//
Query:       EGE27539.1  [L=42]
Description: hypothetical protein EA1_02722 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-10   38.1   2.1      1e-09   38.0   2.1    1.0  1  MaAIMP_sms  Putative methionine and alanine importer, small s


Domain annotation for each model (and alignments):
>> MaAIMP_sms  Putative methionine and alanine importer, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   2.1   5.7e-14     1e-09       1      32 [.       1      32 [.       1      39 [. 0.96

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 5.7e-14
  MaAIMP_sms  1 mstaAiimmvLFiviiWGGLvlaliaLrrePD 32
                m+t A+ +m++ +v iWGGL+++++ L ++PD
  EGE27539.1  1 MGTLALTVMIIAMVAIWGGLIISALHLSKHPD 32
                9******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 343.46
//
Query:       EGE27540.1  [L=534]
Description: cytochrome d ubiquinol oxidase subunit I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.9e-172  573.0  24.2   3.2e-172  572.9  24.2    1.0  1  Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.31   10.9   0.0    1.6  2  DHOase          Dihydro-orotase-like
        1.5    8.6   7.6        1.3    8.8   0.5    3.6  3  Oleosin         Oleosin


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  572.9  24.2  5.4e-176  3.2e-172       1     418 []       9     508 ..       9     508 .. 0.99

  Alignments for each domain:
  == domain 1  score: 572.9 bits;  conditional E-value: 5.4e-176
  Cyt_bd_oxida_I   1 laRlqfaltavfHflfvpltlGlalllailetlylrtgdekykklakfwgklfainFavGvvtGivlefqfgtnWseysrfvGdifgapLaiEgl 95 
                     ++Rlqfa+ta+fHflfvpltlG+++ll+i+e +yl tg++ +k++++fwgklf+inF++Gv+tGi++efqfgtnW++ys++vGd+fgapLaiEgl
      EGE27540.1   9 ISRLQFATTALFHFLFVPLTLGMTWLLVIMEAVYLITGKQIWKDMTRFWGKLFGINFVLGVTTGITMEFQFGTNWAYYSHYVGDVFGAPLAIEGL 103
                     69********************************************************************************************* PP

  Cyt_bd_oxida_I  96 lAFflEstflglmlfgwdrvskklhllatwlvaigtllSalwIlaanswmqtPvGaelnpdtgraeltdflavlfnpsalakflHtvlaalltaa 190
                     +AFflEst++gl++fgwd++s+ +h+++t+l+a+gt+lSalwIl+an+wmq+PvGae+n+dt+r+e+++f+++++np a++kf+Htv+a+++t+a
      EGE27540.1 104 MAFFLESTMVGLFFFGWDKMSRLQHFTTTLLMALGTSLSALWILVANGWMQNPVGAEFNYDTMRMEMVSFAEIFLNPDAQNKFVHTVSAGYVTGA 198
                     *********************************************************************************************** PP

  Cyt_bd_oxida_I 191 ffvagvsawyllr.rekefarkslkialvvalvaallqallGdlsgkevaetqpaKlAAmeglwetee..aplslfgipdeeeeknefaieiPgl 282
                      fv+g+sawyll+ r+ ++a++s+++a++++++a++ +++lGd+sg+++ + q++KlA me++wete   a+++l++ ++e+e+kn+++++iP++
      EGE27540.1 199 SFVLGISAWYLLKgRDVALAKRSFHVAAAFGFAAICSAIVLGDESGYSIGQAQQTKLATMEAMWETEPapAGFNLIADINEAEQKNNWSLHIPYV 293
                     *******************************************************************999************************* PP

  Cyt_bd_oxida_I 283 lsllatgsldgevkGlndlpk......................................................................eevP 307
                     ++++ t+s+d+e+ G++d++k                                                                      + +P
      EGE27540.1 294 MGVIGTRSIDTEILGIQDIKKlnadriingvtavsaldlmrqnklngiknpqalidifeehkkdlgfglllkkytddmakitpqmlskavdDSIP 388
                     *******************99************************************************************************** PP

  Cyt_bd_oxida_I 308 pvalvfwsfrimvglgvlllllallalll.........rwllrllllaiplpfiaveaGWivtevGRqPWivygllrtadavspvsagevllsli 393
                      v+++fwsfr+mvg+gvl+l+l+ l l++          wll++++++ip+p+ia+eaGW+v+e+GRqPW+vyg+l+t+ +vs++ ag+v+lsl+
      EGE27540.1 389 RVTPMFWSFRLMVGMGVLMLILYGLCLFFslkgsfihkPWLLKFAMIMIPAPWIAIEAGWFVAEYGRQPWTVYGILPTHLSVSNIDAGHVILSLA 483
                     *************************99989********89******************************************************* PP

  Cyt_bd_oxida_I 394 lflllylvLlvvevylllklikkgp 418
                     +f+l+y++L +vev+l++k+++ gp
      EGE27540.1 484 GFVLFYTILGIVEVFLMVKYVRLGP 508
                     *********************9886 PP

>> DHOase  Dihydro-orotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.3   7.8e+03      34      65 ..     167     198 ..     127     200 .. 0.65
   2 ?   10.9   0.0   5.2e-05      0.31      20      54 ..     248     282 ..     236     338 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.3
      DHOase  34 gvtfkaPaaitveddseeafiltddtvyvtiq 65 
                  +     a+i ++ d+++ f+ t ++ yvt +
  EGE27540.1 167 RMEMVSFAEIFLNPDAQNKFVHTVSAGYVTGA 198
                 33333337888888888888888888888765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.2e-05
      DHOase  20 geakeliettvaaygvtfkaPaaitveddseeafi 54 
                 g+a++++  t++a+  t +aPa++++  d +ea  
  EGE27540.1 248 GQAQQTKLATMEAMWETEPAPAGFNLIADINEAEQ 282
                 79***********************9999888544 PP

>> Oleosin  Oleosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.17     1e+03      52      74 ..     215     237 ..     213     258 .. 0.85
   2 ?    8.8   0.5   0.00022       1.3       9      50 ..     400     441 ..     394     454 .. 0.87
   3 ?    1.2   0.2     0.048   2.9e+02      11      32 ..     474     495 ..     469     505 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.17
     Oleosin  52 iaLavagflasgafgvaalssls 74 
                 +aLa  +f +++afg aa+ s  
  EGE27540.1 215 VALAKRSFHVAAAFGFAAICSAI 237
                 6899999*********9998865 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00022
     Oleosin   9 lvvlggilLlLsGltLagtvigLavatPllvlfSPvlvPaai 50 
                 +v +g+ +L+L Gl L  ++ g  +  P l+ f  +++Pa  
  EGE27540.1 400 MVGMGVLMLILYGLCLFFSLKGSFIHKPWLLKFAMIMIPAPW 441
                 67789**********************************864 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.048
     Oleosin  11 vlggilLlLsGltLagtvigLa 32 
                  +g ++L L+G++L  t++g++
  EGE27540.1 474 DAGHVILSLAGFVLFYTILGIV 495
                 579999********99999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4130.32
//
Query:       EGE27541.1  [L=382]
Description: cytochrome d ubiquinol oxidase, subunit II [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-97  325.9  36.3      3e-97  325.7  36.3    1.0  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
  ------ inclusion threshold ------
      0.094   12.7   0.3       0.28   11.1   0.3    1.8  1  MRAP             Melanocortin-2 receptor accessory protein fa


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.7  36.3  3.3e-101     3e-97       1     303 []      11     365 ..      11     365 .. 0.95

  Alignments for each domain:
  == domain 1  score: 325.7 bits;  conditional E-value: 3.3e-101
  Cyt_bd_oxida_II   1 lqliwflligvllagYvvldGfDlGvGillpllakkdeerrlllnsigpvWdgnevWLvtaggalfaaFPlayatlfsglylpllliLlglilR 94 
                      l+l+w+l++g+ll+g++++dG D+Gv +llp+++++d err+++n+++p+W+gn+vW+vtagga+faa Pl+yat+fsg+y++l+++L++l++R
       EGE27541.1  11 LKLVWWLIVGILLIGFAIMDGHDIGVCTLLPFVGRSDIERRIIINTVAPHWEGNQVWFVTAGGAIFAALPLVYATAFSGYYWALIAALWALFFR 104
                      689********************************999******************************************************** PP

  Cyt_bd_oxida_II  95 gvafefrskaeskrwrklwdlaffigSllaalllGvalgnllqGvpfdad.....ey.gflsdllnpfallvglllvalflllGalylalkteg 182
                      +v+f++rs ++++rwr++wd+++figS+++al++Gv++gnll G+pf++d     +y g + +ll+pfall+g+++va+++++G +yla +t++
       EGE27541.1 105 PVGFKYRSMIKNDRWRHTWDWLLFIGSAVPALIFGVTFGNLLLGSPFHFDqnlvsTYsGSFIELLTPFALLCGVVSVAMLTMQGGVYLAHRTTE 198
                      **********989**********************************8666788766566668******************************* PP

  Cyt_bd_oxida_II 183 elqerarrlalvlalvllvllvvvllwtll........................................lvllllavlalllavlllrkkreg 236
                      ++q+ a+++++v+al++ +l++++++w+                                          ++l +l+vl+ +++++ll+ +r++
       EGE27541.1 199 SIQSYAKTATNVAALATSLLFAIAGFWVQSldgyllvgdidggavidplskqvqiqsgawltnfydypwlWLLPALGVLMPVMVIILLKIERTL 292
                      *************************88777899999999999999999999999999999999999998644447999999999999999**** PP

  Cyt_bd_oxida_II 237 laflasaltvllvvlllavslfPyllpss......ltianaasseytlkvmlivalillplvlaytawlyrvf 303
                      laf+as+l+vl+++++ +++lfP+ +pss      lt+++a+ss++tl vml+v++illplvl yt w+y v+
       EGE27541.1 293 LAFIASSLAVLGIIATTGAALFPFYMPSStdprssLTVWDATSSHFTLLVMLFVVVILLPLVLTYTSWAYAVM 365
                      **********************************************************************997 PP

>> MRAP  Melanocortin-2 receptor accessory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   3.2e-05      0.28      41      75 ..     339     373 ..     334     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.2e-05
        MRAP  41 afWvsLavfvvllflvLlylsksGspqqrnsekrh 75 
                 ++ v L v v+ll lvL+y s++ ++   + +k++
  EGE27541.1 339 TLLVMLFVVVILLPLVLTYTSWAYAVMRGKVTKAY 373
                 56788999***************999887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 2915.13
//
Query:       EGE27542.1  [L=42]
Description: cyd operon protein YbgT [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-12   46.7  10.2    2.7e-12   46.6  10.2    1.0  1  YbgT_YccB  Membrane bound YbgT-like protein


Domain annotation for each model (and alignments):
>> YbgT_YccB  Membrane bound YbgT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6  10.2   1.5e-16   2.7e-12       1      26 [.       1      26 [.       1      27 [. 0.97

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.5e-16
   YbgT_YccB  1 MWYFaWiLGvlLAvlfgilnalwlEk 26
                MWYFaWiLG+++Avl++++ a+w E+
  EGE27542.1  1 MWYFAWILGLGFAVLLAVVSAVWVEF 26
                *************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 314.81
//
Query:       EGE27543.1  [L=653]
Description: thioredoxin family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-25   87.5   0.1    1.1e-24   86.7   0.1    1.4  1  DsbC           Disulphide bond corrector protein DsbC
      2e-14   54.0  14.9      3e-14   53.4  14.9    1.3  1  DsbD           Cytochrome C biogenesis protein transmembrane 
    1.5e-12   47.9  21.0    1.5e-12   47.9  21.0    1.9  2  DsbD_2         Cytochrome C biogenesis protein transmembrane 
    6.4e-08   32.5   0.0    1.3e-07   31.5   0.0    1.5  1  Thioredoxin    Thioredoxin
      3e-06   27.3   0.0    6.5e-06   26.2   0.0    1.5  1  Thioredoxin_7  Thioredoxin-like
    0.00014   22.3   0.0    0.00035   21.0   0.0    1.7  1  Thioredoxin_2  Thioredoxin-like domain
  ------ inclusion threshold ------
      0.047   14.0   0.6       0.19   12.0   0.6    2.0  1  DUF4022        Protein of unknown function (DUF4022)


Domain annotation for each model (and alignments):
>> DsbC  Disulphide bond corrector protein DsbC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.1   4.4e-28   1.1e-24       1     118 [.      33     148 ..      33     150 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 4.4e-28
                 CCCCCECCCCEEEEEEECCCEEEEEEEE-TTEEEECCCECEEEESCCCC.CEEEEE---.EEEECCCTEEEEEEECSEEEEEEEEECEC.SSEEEEEEE CS
        DsbC   1 aaellkpeeafkfsaagdtntlalrweiapgyylYwdkpsgeltlsagvalgelqlPap.eekedeffglevevYegevtlplplkaaadpaelklkvt 98 
                 ++++l+++eafk+s+++ +++l++++ + p++y+Y++++  +ltl++gv+ g +++ +  ++++d++fg  + v+e++vt++++l+++++ ++  ++++
  EGE27543.1  33 QPKFLPVHEAFKVSSSQVGDELVVNFVVTPKHYVYQERL--SLTLPEGVSSGSWKFDKTpTMIDDPNFG-ITPVFEENVTAKIKLSSQTGIQKQPVQIR 128
                 679************************************..***************97659********.*******************99999***** PP

                 EEEEETTTEEEEEEEEEEEE CS
        DsbC  99 yqgCaeaglCyppetklvll 118
                 +qgCa+aglCyppet++v++
  EGE27543.1 129 WQGCAKAGLCYPPETTTVQI 148
                 ****************9986 PP

>> DsbD  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4  14.9   1.2e-17     3e-14       2     212 ..     262     472 ..     261     473 .. 0.76

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 1.2e-17
        DsbD   2 flaGllsflsPCilpliPaylsyisgvsvedvktekkkvkvllkallFvlGlslvfvslglsaaflgqllkdvkevirrvagli.....villGlhflg 95 
                 flaG+l  ++PC+ p+iP+   +++    ++  +     + +  +l + +G++  + +lg+ +a  gq l ++ ++++r+  li       ++ + +lg
  EGE27543.1 262 FLAGILLAFTPCVYPMIPIVANIVARQHAKSDAK-----RGFALSLAYGVGVASAYGLLGALIAWFGQAL-GIATWLQRAEVLIgaallFAIFAIFMLG 354
                 9******************999998554433222.....46999*************************9.8999998764443110003344455555 PP

        DsbD  96 vfk...ievle.klklllkikkkaelsvlgalllGltFalgwsPCigPvlasvlalaaskeslakgallllvyvlGlaipfllvglllellkkklkslk 190
                  ++    +++  +l+l  ++  +   ++ g++l Gl+ al+ sPC++  +a  l+++a ++++  g  +l++  +G+++p++l+g   ++    + +  
  EGE27543.1 355 WINirlPSAISnQLSLKSQAADNRLGTMGGSYLSGLLSALVVSPCVSAPMAGALTVVAASGNVFFGFAALFALGMGISAPLVLLGTAQGK---WMPKSG 450
                 5444432222202222233333444456689***************9888888999999999***********************99994...446667 PP

        DsbD 191 kyskaveiaggvllvllGvlll 212
                  +++ ++++gg ll  + +ll+
  EGE27543.1 451 AWMQHIRTLGGFLLFGVSLLLI 472
                 89999********998888875 PP

>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9  21.0   5.9e-16   1.5e-12       2     188 ..     261     456 ..     260     470 .. 0.77
   2 ?   -2.0   0.3       1.1   2.8e+03     165     195 ..     486     516 ..     474     521 .. 0.52

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 5.9e-16
      DsbD_2   2 afllgLlgsl.hClgmCggivlalslsk...p..kral.alllynlGRilsYallGalvgllgsvlqlageleglrallgvllgllllllglklllkkk 93 
                 +fl+g+l ++ +C+    +iv+ + +++   +  kr +  +l+y +G  ++Y llGal++++g++l  a+ l+  + l+g +l++++ +  + +l++ +
  EGE27543.1 261 LFLAGILLAFtPCVYPMIPIVANIVARQhakSdaKRGFaLSLAYGVGVASAYGLLGALIAWFGQALGIATWLQRAEVLIGAALLFAIFA--IFMLGWIN 357
                 79999998888****99*******8888443132454635****************************999865444444433333222..22333335 PP

      DsbD_2  94 llklerlgkllsrllkklakklkslasalllGllnGll..pC..glvysalllalasgsaleGalvmlaFgLGTlpalllfglllgllskklrkkllrl 188
                 ++  ++++++ls   ++  ++l ++ +++l Gll +l+  pC  +++  al++++asg+++ G ++++a+g+G   +l+l+g++ g +  k  + ++++
  EGE27543.1 358 IRLPSAISNQLSLKSQAADNRLGTMGGSYLSGLLSALVvsPCvsAPMAGALTVVAASGNVFFGFAALFALGMGISAPLVLLGTAQGKWMPKSGAWMQHI 456
                 55567788889999999999999*************98668*66679*************************************999988877666542 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
      DsbD_2 165 palllfglllgllskklrkkllrlagvllil 195
                 ++ +++ +++ +ls   ++ l++l++++ ++
  EGE27543.1 486 MLWFIAVAAWLYLSVGRHQPLFKLLAIIPMI 516
                 2222333333335556666666666655444 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     5e-11   1.3e-07       9     101 ..     556     651 ..     548     652 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 5e-11
                  HHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHH....HHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHH CS
  Thioredoxin   9 nFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdened....lakkyevegiPtlklfkngkevkkyegarekeklaafl 101
                  + ++ +   +++vlv+ +A+wC  C+ ++ +l +   ++ ++ +++k+d++e +d    + ++y+  g P+l+++++gk  + + g+ + e+l++ l
   EGE27543.1 556 ELDSVLVT-HDKVLVDVTADWCIECRIMERTLFTDRPAVMNDYQVVKLDITETTDdsraILSRYQLFGPPALLIYHQGKLERVLLGETKPETLKQAL 651
                  55666666.99********************9999999999********99876522226789****************999999999889998865 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.6e-09   6.5e-06      17      81 ..     564     629 ..     555     630 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.6e-09
                    T--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.....-TT---SSEEEEE CS
  Thioredoxin_7  17 gkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdani....leldeqgvPvvafl 81 
                    +  vlv+++a+wc +C+ +er++ +d+     + +++ ++++d+te+ +       +++  g P+++++
     EGE27543.1 564 HDKVLVDVTADWCIECRIMERTLFTDRPA---VMNDYQVVKLDITETTDDSrailSRYQLFGPPALLIY 629
                    6689**********************666...4478888888885544444233322222458888776 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.4e-07   0.00035       5     109 .]     564     651 ..     561     651 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.4e-07
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllfp.lkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPt.ivfldgkeivarlpG 98 
                    + +vlv++t+++C  C+ ++++l+++     r    p + ++++ +  +i  +++ +         ++ + +y+++g P+ +++ +gk    +l G
     EGE27543.1 564 HDKVLVDVTADWCIECRIMERTLFTD-----R----PaVMNDYQVVKLDITETTDDS---------RAILSRYQLFGPPAlLIYHQGK-LERVLLG 640
                    789***********************.....2....334566666677777777665.........99999*********66688888.666999* PP

  Thioredoxin_2  99 yvpaeeleall 109
                     +++e l+++l
     EGE27543.1 641 ETKPETLKQAL 651
                    ******99987 PP

>> DUF4022  Protein of unknown function (DUF4022)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6   7.4e-05      0.19       6      72 ..     252     323 ..     248     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.4e-05
     DUF4022   6 imsiitlallllaeilvaii.....ligvsieicsygwkksngikysclllslllgtasilgllaapayffi 72 
                 i  i+t+ ll+la il+a       +i +  +i +    ks+  +   l l+  +g as  gll a   +f 
  EGE27543.1 252 ISPILTIGLLFLAGILLAFTpcvypMIPIVANIVARQHAKSDAKRGFALSLAYGVGVASAYGLLGALIAWFG 323
                 6679*************97544455899999*********************************99766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 4429.59
//
Query:       EGE27544.1  [L=91]
Description: Aldehyde dehydrogenase (NAD(+)) [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 682.14
//
Query:       EGE27545.1  [L=421]
Description: acetaldehyde dehydrogenase 2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.6e-150  499.9   0.0   6.3e-150  499.7   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
     0.0026   17.2   0.0      0.048   13.1   0.0    2.1  1  DUF1487   Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.7   0.0  7.1e-154  6.3e-150      57     461 ..       2     408 ..       1     409 [. 0.96

  Alignments for each domain:
  == domain 1  score: 499.7 bits;  conditional E-value: 7.1e-154
                 HHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT CS
      Aldedh  57 LrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaG 154
                 L k+a+ lee+ e la +et+e+Gkp++e+ a +++ aid++ry+a+ ++  eg + +++e++ a+ ++eP+Gvvg+I+PWNfP+l+aawk+apalaaG
  EGE27545.1   2 LLKIANRLEENLELLAVAETWENGKPIRETLAaDIPLAIDHFRYFAGCIRAQEGGISQIDEDTVAYHYHEPIGVVGQIIPWNFPILMAAWKIAPALAAG 100
                 89****************************************************9999999************************************** PP

                 -EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTS.H... CS
      Aldedh 155 NtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivleda.D... 249
                 N++vlKPae+tp+s+l+l+el+e+  lP+g+lnvv+g+g +vge l+++p++ kv+ftGstevg+ki++ a++n+ + tlElGGk+p++ ++d+ D   
  EGE27545.1 101 NCIVLKPAEQTPVSILVLIELIED-LLPAGILNVVNGYGPDVGELLATNPRIGKVAFTGSTEVGQKIMEYATENIIPATLELGGKSPNVFFADVmDkdd 198
                 ************************.9***************************************************************7777653212 PP

                 ..HHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SS CS
      Aldedh 250 ..ldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeagle 346
                   ldka+e+  + + +n+G+vC+++sr+lv+esi++ef++k ve++kk+k g+pl  +t vG+++s++q++k+ +y++++k+egak+l+Gge  + + +
  EGE27545.1 199 efLDKALEGFTM-FALNQGEVCTCPSRALVHESIAEEFLKKAVERVKKIKTGHPLYTETMVGAQASQEQQDKILGYIDKGKSEGAKMLTGGEV-RYDVD 295
                 556777777666.6789**************************************************************************64.67899 PP

                 STTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES CS
      Aldedh 347 kgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglG 445
                  gy++ePtv+++ +++m+i+++EiFGPVl+v++fkd++eai+iaNdt yGL+agv+t+d ++a r+ ++++aG v+ N+++ + a+a +fgG+k+Sg+G
  EGE27545.1 296 GGYYIEPTVFKG-ENSMEIFRDEIFGPVLAVTTFKDFDEAIKIANDTMYGLGAGVWTRDGSTAYRAGRAIQAGRVWTNCYHIYPAHA-AFGGYKKSGIG 392
                 99*********8.*******************************************************************9999999.*********** PP

                 -BSHHHHHHHTEEEEE CS
      Aldedh 446 reggkegleeytevkt 461
                 re+ k +le+y  +k+
  EGE27545.1 393 RENHKMMLEHYQLTKN 408
                 ***********99986 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   5.3e-06     0.048      39     170 ..     225     375 ..     212     391 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.3e-06
     DUF1487  39 vlveesirdefvervrsklkplseevaeHpsylkalekide..lkaktisa....................ksesakakasPilVldvthsflgdkptg 115
                  lv+esi++ef+++  +++k++++    Hp y++++   +    + + i +                    +++     +  ++  + + + + d+  g
  EGE27545.1 225 ALVHESIAEEFLKKAVERVKKIKT---GHPLYTETMVGAQAsqEQQDKILGyidkgksegakmltggevryDVDGGYYIEPTVFKGENSMEIFRDEIFG 320
                 59*********9998888888875...8*******9766652255666776777787777777777766555555555555555556677777764433 PP

     DUF1487 116 .vvTlhtFrnakEvvkllakeslkfasvsvwneklaavyelvarlnvdvftiNCak 170
                  v+ + tF+   E++k+++          vw    +++y +  +++   +  NC++
  EGE27545.1 321 pVLAVTTFKDFDEAIKIANDTMYG-LGAGVWTRDGSTAYRAGRAIQAGRVWTNCYH 375
                 377788888888888876544444.4457788888888888888887777778875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3249.84
//
Query:       EGE27546.1  [L=501]
Description: sodium/proton-dependent alanine carrier protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.5e-136  455.8  39.5   2.1e-136  455.3  39.5    1.1  1  Na_Ala_symp     Sodium:alanine symporter family
     0.0026   16.7   8.5     0.0026   16.7   8.5    3.9  5  Spore_permease  Spore germination protein


Domain annotation for each model (and alignments):
>> Na_Ala_symp  Sodium:alanine symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.3  39.5  2.3e-140  2.1e-136       7     389 ..      51     475 ..      46     479 .. 0.92

  Alignments for each domain:
  == domain 1  score: 455.3 bits;  conditional E-value: 2.3e-140
  Na_Ala_symp   7 kksegeissfqAlatalaarvGtGniaGvatAialGGpGAvfWmwvvallGmatkfvEstLaqlYkekdekgevrGGpayyiekglkkk...wlavlf 101
                  ++s ++issfqAl+++l++rvG+GniaGva Ai +GGpGAvfWmwvva+lG+at+++EstLaq+Yke+d +g++rGGpayy+ek ++     ++++l+
   EGE27546.1  51 NQSPEGISSFQALTVSLSGRVGMGNIAGVAAAIGFGGPGAVFWMWVVAFLGAATAYTESTLAQIYKEND-RGQYRGGPAYYFEKFFGGGfgkFYGILV 147
                  44899***************************************************************9.**************99865666****** PP

  Na_Ala_symp 102 avlliialglginavqansiasaleea.............feveklvvgivlavllalvilggikriakvaevvvPvmailYillalvvillniekvp 186
                  a+ +ii++gl++++vq+n +++a++               +++++lvv++v++++l+l+i+ggikria+vae+vvP+ma+ Yil+a++++l+ni+++p
   EGE27546.1 148 AISFIISCGLFLPGVQSNGVVKAITGItgegtmvntafgaVGTNTLVVTLVMVLILGLIIFGGIKRIARVAEFVVPLMALGYILMAVLIVLFNINQLP 245
                  *************************97688999888877778999***************************************************** PP

  Na_Ala_symp 187 evlalifksAFgleavagGilgaaialGvkRglfSneAGlGsapiaaAaaevshpvkqGlvqalgvfidtlvvCtatalvills.............. 270
                  ++++li+ +AF+++a +g+++g    +GvkRg++SneAG+G++p+ a aaev+hp++qG+vqa++v++dtl+vC+ata++il++              
   EGE27546.1 246 NIISLIVGDAFTAQAGLGAAIG----WGVKRGVYSNEAGQGTGPHHAGAAEVEHPAQQGMVQAFSVYVDTLFVCSATAFMILMTgmyniqgtlpegqf 339
                  ***************9999999....*********************************************************555555566666666 PP

  Na_Ala_symp 271 ...........egvaltqaalesvlgsvgalfvaialllFafstilgnyyygeknleyllgkkkk...lliyrvlvlllvfvgavaslelvwnlaDia 354
                             +g a+tq a++s +gs+g++fva+a+++F+f+ti+++yy++e n++yl+++ k+   l++++++++++v++ga+++   +wn++D++
   EGE27546.1 340 lvqnvdaatiiSGPAFTQMAVSSIFGSFGNTFVAVAVFFFSFTTIMAYYYIAEVNVAYLTRSIKTtgaLFFIKLVLIFAVAYGAINNSGYIWNMGDVG 437
                  66667777777*************************************************7666567799**************************** PP

  Na_Ala_symp 355 lglmalvnli...aillLskvvvkalkdYekqkkkgkk 389
                  +gl a++n++   ai++++k+++ alkdYe+q+k+g +
   EGE27546.1 438 VGLTAWLNIVgilAIFFMAKPAILALKDYEAQQKAGVT 475
                  ********98222455799****************975 PP

>> Spore_permease  Spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.3     0.095   8.5e+02      87     106 ..      27      46 ..      16      52 .. 0.77
   2 ?    0.1   0.5     0.031   2.8e+02       2      94 ..      57     156 ..      56     161 .. 0.57
   3 !   16.7   8.5   2.9e-07    0.0026     111     167 ..     189     247 ..     178     252 .. 0.92
   4 ?   -2.5   0.1       0.2   1.8e+03     213     236 ..     304     327 ..     294     334 .. 0.75
   5 !    3.0   4.0    0.0041        36     258     320 ..     363     426 ..     341     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.095
  Spore_permease  87 lyFlllaafelRefseliqv 106
                      y +l+ +++lR f e+i +
      EGE27546.1  27 FYSILTRFVQLRHFKEMIRL 46 
                     3558889999******9976 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.031
  Spore_permease   2 istkqlfvlivsfqlGvgiltlprsvaeqatpdg..Wisvllagiiililvllmlkllkkfpekt.......liellkkilgkwLGsllsilfil 87 
                     is++q++++  s  +G+g +  +++++   +p +  W+ v+  ++++   +++ + l + ++e++        + +++k +g   G + +il ++
      EGE27546.1  57 ISSFQALTVSLSGRVGMGNIAGVAAAIGFGGPGAvfWMWVV--AFLGAATAYTESTLAQIYKENDrgqyrggPAYYFEKFFGGGFGKFYGILVAI 149
                     56666666666666777777766666666644433355544..2333333333333333333332111111156789999999999999999999 PP

  Spore_permease  88 yFlllaa 94 
                      F++ ++
      EGE27546.1 150 SFIISCG 156
                     9999886 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 2.9e-07
  Spore_permease 111 dtplwiiilllllvilYlvvkGieslar..eflfiivilliilllillfslklaeiknl 167
                      t + +++l+++l+  +++++Gi+ +ar  ef+++++ l  il+++l++ +++ ++ n+
      EGE27546.1 189 GTNTLVVTLVMVLILGLIIFGGIKRIARvaEFVVPLMALGYILMAVLIVLFNINQLPNI 247
                     6899************************99999999****************9999887 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 0.2
  Spore_permease 213 llgvlistllyllttlivilvlsv 236
                     + +v + tl+++ +t+++il+ ++
      EGE27546.1 304 AFSVYVDTLFVCSATAFMILMTGM 327
                     567888888888888888887665 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.0041
  Spore_permease 258 fierl.evllivvwilvifakialylyaavlgisevfkikkkkllvililiviliasilknsnd 320
                     ++ ++ + ++ v+++   f++i+ y+y+a + ++++ +  k +  +++i +v+++a+ + ++n+
      EGE27546.1 363 IFGSFgNTFVAVAVFFFSFTTIMAYYYIAEVNVAYLTRSIKTTGALFFIKLVLIFAVAYGAINN 426
                     55555345777888899999*****************999999999999999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1043  (0.0581739); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3886.07
//
Query:       EGE27547.1  [L=207]
Description: LemA family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-55  187.2   3.9    1.7e-55  187.0   3.9    1.1  1  LemA      LemA family
  ------ inclusion threshold ------
      0.014   15.2   1.1      0.023   14.6   1.1    1.3  1  LPAM_2    Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> LemA  LemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.0   3.9   1.9e-59   1.7e-55       1     149 []      37     197 ..      37     197 .. 0.98

  Alignments for each domain:
  == domain 1  score: 187.0 bits;  conditional E-value: 1.9e-59
        LemA   1 awsqidvqlkrRaDlipnLvetvkgyakhEketleevteaRaka..........aeaesveekaeaenqlssalsrllavaEnYPdLkanenfleLqee 89 
                 aws++ +q++rRaDl+pnLv++v+ ya+hE+ +++ev+eaRa++          +++++++++++a+ q++salsrl++v+E+YP+Lka++ f++Lq +
  EGE27547.1  37 AWSEVVNQYQRRADLVPNLVQVVERYANHEQAVFSEVAEARARVgsvqltpealNDPQAMQQYQDAQGQMTSALSRLMMVSERYPELKADALFQDLQVQ 135
                 7*****************************************************9******************************************** PP

        LemA  90 legtEnriavaRrrYneavreyntkiesfpsnivaklfgfkekelfea.eeae.reapkVkF 149
                 legtEnri+vaR++Y e vr+ynt++++fp+n++a +fg+k+k+ f++ +ea+ + ap+V+F
  EGE27547.1 136 LEGTENRITVARNHYIEDVRTYNTTVRQFPTNLTAMVFGMKPKPNFSVeNEAAiSVAPTVNF 197
                 ************************************************65666899****99 PP

>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.1   2.5e-06     0.023       3      16 ..      11      24 ..       9      24 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-06
      LPAM_2  3 lllallllLaGCGq 16
                ++lal+l+L+GCG+
  EGE27547.1 11 VILALTLSLSGCGY 24
                79***********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1097  (0.0611858); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1639.22
//
Query:       EGE27548.1  [L=376]
Description: hypothetical protein EA1_02767 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-36  124.7   0.1    3.3e-36  124.2   0.1    1.2  1  TPM_phosphatase  TPM domain
  ------ inclusion threshold ------
      0.054   13.5   0.0       0.13   12.4   0.0    1.6  1  Longin           Regulated-SNARE-like domain


Domain annotation for each model (and alignments):
>> TPM_phosphatase  TPM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.1   3.7e-40   3.3e-36       1     124 [.     104     227 ..     104     228 .. 0.99

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 3.7e-40
                      EEE-SS-S-HHHHHHHHHHHHHHHHTT--EEEEEEESB-TT--HHHHHHHHHHHHSTTTTS-SSEEEEEEETTTTEEEEEE-STTTTT--HHHH CS
  TPM_phosphatase   1 vvDeaglLsdeeeaeleeklaalekktgvqivvvtvdsldgediedyadelfdkwglgkkkkdngvllliavddrkvrietgyglegaltdara 94 
                      vvD a++L+++e  +l+e+l ++++++ +q + v+v+s+dg di dya  ++++w+lg++++d+g+l+ +av+drk++i tgygleg+l+da +
       EGE27548.1 104 VVDVAKILTPSEYLHLTEQLHKIYQDNLAQAALVIVPSTDGIDIFDYALAVAERWQLGQADTDDGLLITVAVNDRKMYILTGYGLEGVLPDAAL 197
                      89******************************************************************************************** PP

                      HHHHHHTHHHHHHHT-HHHHHHHHHHHHHH CS
  TPM_phosphatase  95 esildetilpalkdgdyaggilaavdaiea 124
                      ++i++++i+pa+k+g+ya+g++a++ +i++
       EGE27548.1 198 SRIIRDDITPAFKSGNYAQGLSAGIARIDE 227
                      **************************9986 PP

>> Longin  Regulated-SNARE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05      0.13      28      76 ..      33      78 ..      15      85 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
      Longin 28 laedgltylviadesyprrlaFafLeeikreFlakygtaktadaadlrp 76
                ++ed+lt l+i+ + ++++ + ++L e  reF ++ ++a++ad    +p
  EGE27548.1 33 VSEDDLTALIISANRASQSNPNSLLAESVREFEQAINPANQADT---KP 78
                46899*******************************98755333...44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2975.78
//
Query:       EGE27549.1  [L=156]
Description: hypothetical protein EA1_02772 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-10   40.8   0.0    2.7e-10   40.5   0.0    1.1  1  TPM_phosphatase  TPM domain
  ------ inclusion threshold ------
       0.11   12.9   0.0       0.16   12.4   0.0    1.2  1  Crystall_4       Beta/Gamma crystallin


Domain annotation for each model (and alignments):
>> TPM_phosphatase  TPM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0     3e-14   2.7e-10       8     124 ..      12     132 ..       8     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 3e-14
                      S-HHHHHHHHHHHHHHHHTT--EEEEEEESB-.....TT--HHHHHHHHHHHHSTTTTS-SSEEEEEEETTTTEEEEEE-STTTTT--HHHHHH CS
  TPM_phosphatase   8 Lsdeeeaeleeklaalekktgvqivvvtvdsl.....dgediedyadelfdkwglgkkkkdngvllliavddrkvrietgyglegaltdaraes 96 
                      L++  +++l++++ ++e  +  +i+ ++ + l      ++d +++a  lf ++++ ++++++gvl ++++ ++++ i  ++g++++   +++++
       EGE27549.1  12 LTKTVKTTLTQAIIQAELGHRGEIYLIIENHLpitnaYSQDCRERALYLFATHKVWDTEHNSGVLAYVNLCEHNLEIIADRGIDQKAHMDDWQN 105
                      899999**************************99876666688999999********9*9********888*********************** PP

                      HHHHTHHHHHHHT-HHHHHHHHHHHHHH CS
  TPM_phosphatase  97 ildetilpalkdgdyaggilaavdaiea 124
                      + d+  + ++++g+++ g+++ ++++++
       EGE27549.1 106 MCDD-AVAQFRQGKMQIGLTTLITQLGK 132
                      ****.******************99976 PP

>> Crystall_4  Beta/Gamma crystallin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.8e-05      0.16      28      86 ..      81     141 ..      67     144 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
  Crystall_4  28 iyahdvkveaaegv..avmLsDwdnlsynrlavfegtveneelkkvraanGetldfsrPrs 86 
                 + +h++++ a++g+  + ++ Dw+n+  + +a+f +   +  l++   + G+ l +  P s
  EGE27549.1  81 LCEHNLEIIADRGIdqKAHMDDWQNMCDDAVAQFRQGKMQIGLTTLITQLGKLLKLHYPSS 141
                 468999999999983356799***************9999999999999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1284.21
//
Query:       EGE27550.1  [L=45]
Description: hypothetical protein EA1_02777 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 377.02
//
Query:       EGE27551.1  [L=90]
Description: hypothetical protein EA1_02782 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 705.36
//
Query:       EGE27552.1  [L=97]
Description: IS1016 family transposase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-15   55.2   0.1    9.3e-15   54.9   0.1    1.0  1  DDE_Tnp_IS1595  ISXO2-like transposase domain
  ------ inclusion threshold ------
      0.024   14.3   0.2      0.027   14.2   0.2    1.0  1  Cytomega_US3    Cytomegalovirus US3 protein


Domain annotation for each model (and alignments):
>> DDE_Tnp_IS1595  ISXO2-like transposase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.1     1e-18   9.3e-15      74     152 ..       4      81 ..       2      82 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 1e-18
  DDE_Tnp_IS1595  74 vepgstivtDearaYdalgeegy.dhervnhsekeystegvttnlvesffsrlkrairGtyhkisekylqrYlnefaFRf 152
                     v+p+s i++D++r Y++l+  gy +h rvnhs++e + ++ ++n++esf+s  kr++   + ++ +k +++ l+e+++R+
      EGE27552.1   4 VSPDSVIYSDGWRGYNGLVDVGYaKHFRVNHSKNEFAHGKCHINGIESFWSFTKRRFA-KFNGV-SKNFEWHLKECEWRW 81 
                     99****************999763699**********9*****************998.78888.6789**********8 PP

>> Cytomega_US3  Cytomegalovirus US3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2     3e-06     0.027      19      79 ..       7      73 ..       4      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3e-06
  Cytomega_US3 19 dsvt.....rplkvvvseiksahfeveenrcyidnGklyakGriv.GnlskkvfvdvGivsesyadd 79
                  dsv      r ++ +v      hf+v++ +  +  Gk +++G  +   ++k  f+++ +vs+++  +
    EGE27552.1  7 DSVIysdgwRGYNGLVDVGYAKHFRVNHSKNEFAHGKCHINGIESfWSFTKRRFAKFNGVSKNFEWH 73
                  6666666668888888888899********************766369***************6544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 766.63
//
Query:       EGE27553.1  [L=107]
Description: transposase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-25   88.9   0.8    2.5e-25   88.5   0.8    1.2  1  DUF4096   Putative transposase of IS4/5 family (DUF4096)


Domain annotation for each model (and alignments):
>> DUF4096  Putative transposase of IS4/5 family (DUF4096)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.8   1.4e-29   2.5e-25       1      75 []       2      75 ..       2      75 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 1.4e-29
     DUF4096  1 LtDeqWellepllpepkkrrGrprkvdlrevlngIlyvlrtGcpWrdLPedfgswstvyrrfrrWskagvwerif 75
                L+D+qW+++epl   + +++Gr  k d+r +++++l+++rtG pWrdLPe+fg+w++v++r+rrW ka+ ++ if
  EGE27553.1  2 LSDAQWAKIEPLCAGKVTDAGRSAK-DNRLFIEAVLWIIRTGSPWRDLPEEFGKWNSVFQRYRRWVKAERFAVIF 75
                89***********866665599998.******************************************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 820.92
//
Query:       EGE27554.1  [L=72]
Description: IS4 family transposase, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00039   20.5   0.0    0.00042   20.4   0.0    1.0  1  DDE_Tnp_1_3  Transposase DDE domain
    0.00042   20.0   0.0    0.00044   20.0   0.0    1.0  1  DDE_Tnp_1    Transposase DDE domain
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.18   12.2   0.0    1.2  1  DDE_Tnp_1_2  Transposase DDE domain


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_3  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     7e-08   0.00042      47     108 ..       4      66 ..       2      72 .] 0.87

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7e-08
  DDE_Tnp_1_3  47 kLhliindkGeilavkltpgnvdDrepveelake.llgklfaDkgyiskklaeelleegieli 108
                  k+ ++++  G++++++l pg  +D   ve+l+k+  ++ l+aDk++ +++l eel+e++ + +
   EGE27554.1   4 KILALVDALGNLVSFTLLPGQRHDIVGVEALIKDkEFNALLADKTFDADWLLEELNERACQAV 66 
                  666789999*******************9888752689******************9988766 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   7.3e-08   0.00044      37     107 ..       4      70 ..       1      72 [] 0.91

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7.3e-08
   DDE_Tnp_1  37 klhiavdtrsglilsvvitpgnvhdskglkqlldelrprkgklvlaDaGYasaelldtleekgvdyiirlk 107
                 k+ ++vd+  g ++s+ + pg++hd+ g+++l++     +   +laD+ ++   ll++l e+ ++ +i+++
  EGE27554.1   4 KILALVDAL-GNLVSFTLLPGQRHDIVGVEALIKDK---EFNALLADKTFDADWLLEELNERACQAVIPPR 70 
                 8999*****.789999999************99963...89**********99999*********999985 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     3e-05      0.18       2      29 ..      44      71 ..      43      72 .] 0.94

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3e-05
  DDE_Tnp_1_2  2 laDrgYrsralrealkergIrasipplg 29
                 laD+ ++++ l+e+l er ++a+ipp++
   EGE27554.1 44 LADKTFDADWLLEELNERACQAVIPPRQ 71
                 79***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 547.78
//
Query:       EGE27555.1  [L=269]
Description: ubiquitous surface protein A2H UspA2H, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-28   95.5  32.0    2.4e-16   59.3   6.7    4.0  3  DUF1079        Repeat of unknown function (DUF1079)
    7.4e-16   58.0   6.6    1.3e-15   57.2   6.6    1.4  1  YadA_anchor    YadA-like membrane anchor domain
     0.0011   19.4   7.7       0.11   12.9   0.0    3.5  3  NPV_P10        Nucleopolyhedrovirus P10 protein
     0.0014   18.9  12.9      0.049   13.9   0.0    2.8  3  BLOC1_2        Biogenesis of lysosome-related organelles comp
  ------ inclusion threshold ------
      0.022   15.2  10.2        0.2   12.2   0.3    2.9  2  DUF16          Protein of unknown function DUF16
       0.03   14.9   5.0        9.6    6.9   6.2    3.3  4  SlyX           SlyX
      0.035   14.3  14.6       0.32   11.2   6.3    2.5  2  Fib_alpha      Fibrinogen alpha/beta chain family
      0.042   14.0   2.0        1.5    9.0   2.8    2.4  2  MbeD_MobD      MbeD/MobD like
      0.047   13.5   0.4       0.33   10.8   0.0    2.6  4  TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding d
       0.07   13.2   7.3       0.26   11.3   0.2    2.9  3  DUF1664        Protein of unknown function (DUF1664)
      0.071   13.3  15.6        3.8    7.7  15.9    2.1  2  ATG16          Autophagy protein 16 (ATG16)
       0.11   12.6   2.3       0.76    9.9   0.0    2.5  3  COG2           COG (conserved oligomeric Golgi) complex compo
       0.12   12.1   3.3       0.09   12.5   1.5    1.7  2  Collagen_mid   Bacterial collagen, middle region
        0.3   10.7   6.7        0.4   10.3   6.7    1.3  1  CCDC84         Coiled coil protein 84
       0.84    9.2  11.1          1    8.9  11.1    1.1  1  DUF572         Family of unknown function (DUF572)
        1.2    9.2  15.1         18    5.5   6.6    3.8  3  TMF_DNA_bd     TATA element modulatory factor 1 DNA binding
        1.4    6.4  20.3        2.9    5.3  20.2    1.4  1  DUF3584        Protein of unknown function (DUF3584)
        2.8    8.3  17.7         24    5.3   0.8    3.4  2  Phasin_2       Phasin protein
        4.4    7.4  10.7         22    5.1  10.5    2.2  1  UPF0242        Uncharacterised protein family (UPF0242) N-ter
        4.9    6.4  25.5        2.6    7.3   0.8    2.2  2  DUF4407        Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> DUF1079  Repeat of unknown function (DUF1079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   7.7     2e-15   1.8e-12       1      31 []       7      37 ..       7      37 .. 0.98
   2 !   59.3   6.7   2.7e-19   2.4e-16       1      31 []      50      79 ..      50      79 .. 0.99
   3 ?   -0.2   2.1       1.5   1.3e+03      18      28 ..     119     128 ..     115     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2e-15
     DUF1079  1 ladiyELadQydkkssDAIdaLaKASaeNTd 31
                la ++EL+d y+k+++ AIdaL+KAS+eNT+
  EGE27555.1  7 LAAYNELQDAYAKQQTEAIDALNKASSENTQ 37
                789***************************9 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 2.7e-19
     DUF1079  1 ladiyELadQydkkssDAIdaLaKASaeNTd 31
                +++iyELa+Q+d++ssD I++LaKASa+NTd
  EGE27555.1 50 INNIYELAQQQDQHSSD-IKTLAKASAANTD 79
                8****************.************8 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.5
     DUF1079  18 AIdaLaKASae 28 
                 AIda +KASa+
  EGE27555.1 119 AIDA-NKASAD 128
                 6888.****95 PP

>> YadA_anchor  YadA-like membrane anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   6.6   1.5e-18   1.3e-15       1      60 []     208     269 .]     208     269 .] 0.95

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 1.5e-18
  YadA_anchor   1 pqvslpgkfsvgaGvGgYkgqsAvAvGasarsngnlvvklgvav..ssggsvgggvGvgyqw 60 
                  +q++  gkf+ +a++GgY+++sAvA+Ga++r+n nl++k+g+a+  s++++ ++++Gv+y++
   EGE27555.1 208 FQPYSVGKFNATAALGGYGSKSAVAIGAGYRVNPNLAFKAGAAIntSGNKKGSYNIGVNYEF 269
                  59*****************************************98888889999******98 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   3.5      0.18   1.6e+02      21      56 ..      37      72 ..      20     104 .. 0.82
   2 !   12.9   0.0   0.00013      0.11      21      61 ..     136     176 ..     118     178 .. 0.82
   3 ?    6.4   0.0     0.014        13      13      36 ..     173     196 ..     173     207 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.18
     NPV_P10 21 dalqqqvddvqenlpdvtelnekLdaqsaqLaelet 56
                + + ++ +d+++n++++ el ++ d+ s  +++l +
  EGE27555.1 37 QNIAKNQADIANNINNIYELAQQQDQHSSDIKTLAK 72
                4556666899******************99999976 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00013
     NPV_P10  21 dalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenI 61 
                 da+ ++ + +++n + +t+l +k+d+    +++l+tkv++ 
  EGE27555.1 136 DAITKNGNAITKNAKSITDLGTKVDGFDGRVTALDTKVNAL 176
                 455555599*****************************976 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.014
     NPV_P10  13 ikavddkVdalqqqvddvqenlpd 36 
                 ++a+d+kV+a + +++ +++++++
  EGE27555.1 173 VNALDTKVNAFDGRITALDSKVEN 196
                 789999999999999999998877 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.1     0.011        10       4      72 ..       4      72 ..       1      79 [. 0.90
   2 ?   -0.5   0.2       1.7   1.6e+03      38      60 ..      80     102 ..      67     128 .. 0.55
   3 !   13.9   0.0   5.5e-05     0.049      37      94 ..     136     193 ..     117     195 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.011
     BLOC1_2  4 fekvskyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiek 72
                ++++++y e + + ++++ + + +lN+a+se+ ++++++ a+++++++++ e+ ++ +++ + i+ + k
  EGE27555.1  4 IQDLAAYNELQDAYAKQQTEAIDALNKASSENTQNIAKNQADIANNINNIYELAQQQDQHSSDIKTLAK 72
                6677788888888999999*************************************9999999998876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
     BLOC1_2  38 klkdvaaslekkleklnekyeel 60 
                  ++++ a++ +++e l + +++l
  EGE27555.1  80 RIAKNKADADASFETLTKNQNTL 102
                 44444444444444444444433 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 5.5e-05
     BLOC1_2  37 kklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEak 94 
                 ++++++ + ++k+++ +  +  +++ +  ++ +++++v+ L + v++ D  +++L +k
  EGE27555.1 136 DAITKNGNAITKNAKSITDLGTKVDGFDGRVTALDTKVNALDTKVNAFDGRITALDSK 193
                 3344444455555555555555555555556666666666666666666666666555 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   7.4      0.18   1.6e+02      27      94 ..      30      97 ..       8     112 .. 0.77
   2 ?   12.2   0.3   0.00022       0.2      25      87 ..     120     182 ..      91     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.18
                HB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHH CS
       DUF16 27 efkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqk 94
                +   +n q++ k +a ++ + ++i +l+q+ ++    ik l +   a  +++ k +   +   etL+k
  EGE27555.1 30 KASSENTQNIAKNQADIANNINNIYELAQQQDQHSSDIKTLAKASAANTDRIAKNKADADASFETLTK 97
                33445999999999999999999999999999999999999999999999888666666666666655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00022
                 HHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHH CS
       DUF16  25 lnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetlel 87 
                 ++  k s ++++    + ++k+g+ i k ++ ++ +g k++    ++ a + ++n++d  ++ 
  EGE27555.1 120 IDANKASADTKFAATADAITKNGNAITKNAKSITDLGTKVDGFDGRVTALDTKVNALDTKVNA 182
                 566788889999999999999999999999999999999999988888888888877766654 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.2     0.011       9.6      14      57 ..      20      63 ..      10     111 .. 0.91
   2 ?   -1.5   0.0       4.5     4e+03      23      41 ..      99     117 ..      87     136 .. 0.64
   3 ?    2.1   0.0      0.33     3e+02      10      55 ..     129     174 ..     125     181 .. 0.82
   4 ?    1.5   0.0      0.53   4.8e+02       5      43 ..     166     190 ..     149     203 .. 0.46

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 14 fqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgas 57
                 q ++i++Ln++  e  q i++ q+ ++   +++ el++++ ++
  EGE27555.1 20 QQTEAIDALNKASSENTQNIAKNQADIANNINNIYELAQQQDQH 63
                5789******************************9999997654 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHHHHHHHHH CS
        SlyX  23 ndvvaeqqqqidrlqrqlr 41 
                 +++++e +++ d+l +  +
  EGE27555.1  99 QNTLIEKDKEHDKLITANK 117
                 4566666666666655544 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX  10 iklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55 
                 +k a + d+i +  +++++ ++ i+ l ++++    r+ +l+++ +
  EGE27555.1 129 TKFAATADAITKNGNAITKNAKSITDLGTKVDGFDGRVTALDTKVN 174
                 6778888888888899999999999999999999988888877655 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   5 leeLEiklafqedtieeLndvvaeqqqqidrlqrqlrll 43 
                 +++L +k+  ++               ++ +   ++ +l
  EGE27555.1 166 VTALDTKVNALDT--------------KVNAFDGRITAL 190
                 3333333333333..............333322233333 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   6.3   0.00035      0.32      59     128 ..      11      77 ..       3      80 .. 0.82
   2 ?    7.8   1.4     0.004       3.6      26     126 ..      81     160 ..      77     201 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  59 keikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqk 128
                 +e++d ++++q+++   d +++k s+e  ++i++ ++ i ++++ni +L +  ++ +++i+ L +++++ 
  EGE27555.1  11 NELQDAYAKQQTEAI--D-ALNKASSENTQNIAKNQADIANNINNIYELAQQQDQHSSDIKTLAKASAAN 77 
                 678888888888877..4.55555555555*********************************9998775 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.004
                 CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  26 llkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqd 124
                 + k + d + + e+l+++ +++ ++ ke ++l+++ k+ + ++++s++                      +  a+   i +  n + +n ++i++L ++
  EGE27555.1  81 IAKNKADADASFETLTKNQNTLIEKDKEHDKLITANKTAIDANKASAD---------------------TKFAATADAITKNGNAITKNAKSITDLGTK 158
                 445555555555555555555555555555555555555555555555.....................333333333333333333333333333333 PP

                 HH CS
   Fib_alpha 125 id 126
                 +d
  EGE27555.1 159 VD 160
                 32 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.8    0.0016       1.5       7      68 ..       5      70 ..       1      72 [. 0.64
   2 ?    1.5   0.0      0.37   3.3e+02      50      66 ..     165     181 ..     143     192 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0016
   MbeD_MobD  7 qLLsAlEqLQqdYeqrlqeWesafaelq.rmfeltqrena...aLseqvtgLsqQVesLseqvrRl 68
                q L A  +LQ +Y +++ e  +a ++   +  +  ++++a      + + +L+qQ ++ s  ++ l
  EGE27555.1  5 QDLAAYNELQDAYAKQQTEAIDALNKASsENTQNIAKNQAdiaNNINNIYELAQQQDQHSSDIKTL 70
                5599*************9987776543212222233333333244456778999988888777665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.37
   MbeD_MobD  50 qvtgLsqQVesLseqvr 66 
                 +vt L   V+ L  +v+
  EGE27555.1 165 RVTALDTKVNALDTKVN 181
                 67777777777776664 PP

>> TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       8.9     8e+03      44      52 ..      21      29 ..      15      39 .. 0.62
   2 ?   -2.5   0.1         5   4.5e+03      34      52 ..      53      71 ..      46      73 .. 0.69
   3 ?    0.6   0.0      0.55   4.9e+02       6      25 ..     152     171 ..     149     174 .. 0.70
   4 ?   10.8   0.0   0.00037      0.33       2      36 ..     169     203 ..     168     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.9
  TRAF_BIRC3_bd 44 dqekieaLe 52
                     e i+aL+
     EGE27555.1 21 QTEAIDALN 29
                   345555554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5
  TRAF_BIRC3_bd 34 ieaverqrrldqekieaLe 52
                   i ++++q+ +    i++L 
     EGE27555.1 53 IYELAQQQDQHSSDIKTLA 71
                   5566777777777788775 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.55
  TRAF_BIRC3_bd   6 lsaLetkvatFEnIVsVLnr 25 
                    ++ L tkv  F + V+ L+ 
     EGE27555.1 152 ITDLGTKVDGFDGRVTALDT 171
                    67788888888888887764 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00037
  TRAF_BIRC3_bd   2 lekklsaLetkvatFEnIVsVLnrEverssttiea 36 
                    l  k++aL+tkv+ F + ++ L+  ve   ++ +a
     EGE27555.1 169 LDTKVNALDTKVNAFDGRITALDSKVENGMAAQAA 203
                    6789**********************987766555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   3.5      0.16   1.4e+02      42     111 ..      24      93 ..      11     106 .. 0.60
   2 ?   11.3   0.2   0.00029      0.26      57     123 ..     113     179 ..      90     193 .. 0.71
   3 ?    1.6   0.0      0.29   2.6e+02      55      82 ..     174     201 ..     169     205 .. 0.54

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.16
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeave 111
                 a++ + k   +  +++a+ + +++++i+++ +  ++q + s++ik   ++   ++++i ++    ++ +e
  EGE27555.1  24 AIDALNKASSENTQNIAKNQADIANNINNIYELAQQQDQHSSDIKTLAKASAANTDRIAKNKADADASFE 93 
                 4444555555555666666666666666666666666666666666666666666666655555555555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00029
     DUF1664  57 laatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieek 123
                 ++a k  + ++ ++ d+k  ++++++++  + +t+  + ++++g++v+  +  v+ l++k++ +++k
  EGE27555.1 113 ITANKTAIDANKASADTKFAATADAITKNGNAITKNAKSITDLGTKVDGFDGRVTALDTKVNALDTK 179
                 5556666666666667777777777777777777777777777777777777777777777766654 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.29
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeis 82 
                 ++l +  + +  ri  +d+k+++ ++++
  EGE27555.1 174 NALDTKVNAFDGRITALDSKVENGMAAQ 201
                 3444444556666666666666665555 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  15.9    0.0043       3.8      22     137 ..       8     114 ..       4     126 .. 0.72
   2 ?    3.6   0.0     0.077        69      70     131 ..     132     193 ..     113     205 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0043
       ATG16  22 qaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklke 120
                 +ayn+L d  +++++e+  + ++a+s++         +++ a+++++ +++ ++i +l+q+  q+ ++ ++l k+ + +++r+ + ++  ++  e+l++
  EGE27555.1   8 AAYNELQDAYAKQQTEAIDALNKASSEN---------TQNIAKNQADIANNINNIYELAQQQDQHSSDIKTLAKASAANTDRIAKNKADADASFETLTK 97 
                 5788888888888888777755544333.........23333333334556677888888888888888888888888888888888888888888888 PP

       ATG16 121 deerlaeleaeraalet 137
                 ++++l e  +e+ +l t
  EGE27555.1  98 NQNTLIEKDKEHDKLIT 114
                 88888888888777755 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.077
       ATG16  70 skqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleae 131
                 +++++ i++  +++++  +  ++l  +   +  r+++l +++ +l++k ++ + r+ +l ++
  EGE27555.1 132 AATADAITKNGNAITKNAKSITDLGTKVDGFDGRVTALDTKVNALDTKVNAFDGRITALDSK 193
                 33344444444444444444444444444444445555555555555544444444444443 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.7      0.33     3e+02      73     113 ..      27      60 ..      11      82 .. 0.55
   2 ?   -1.1   0.1       2.1   1.9e+03      71     101 ..      67      97 ..      49     122 .. 0.58
   3 ?    9.9   0.0   0.00084      0.76      52     109 ..     147     204 ..     135     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.33
        COG2  73 evesplaaarkkvesvreklsereeeveskleeakeleekr 113
                  +++  ++       ++++++++++++ +++++  el++++
  EGE27555.1  27 ALNKASSE-------NTQNIAKNQADIANNINNIYELAQQQ 60 
                 33334444.......44444444444444444444444443 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.1
        COG2  71 leevesplaaarkkvesvreklsereeeves 101
                 ++++ +  aa ++++ ++++  ++  e++++
  EGE27555.1  67 IKTLAKASAANTDRIAKNKADADASFETLTK 97 
                 4444444445555555555555555555544 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00084
        COG2  52 edyadFvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakel 109
                 ++ +   +l+++  g++ ++  ++++++a+ +kv+++   + +  ++ve+ ++++++l
  EGE27555.1 147 KNAKSITDLGTKVDGFDGRVTALDTKVNALDTKVNAFDGRITALDSKVENGMAAQAAL 204
                 566666789*****************************************99998776 PP

>> Collagen_mid  Bacterial collagen, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.7   2.4e+03     121     141 ..      21      41 ..      15      76 .. 0.64
   2 ?   12.5   1.5    0.0001      0.09      41     164 ..     124     255 ..     118     264 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.7
  Collagen_mid 121 lssaitPitstvtgttqtvgt 141
                    ++ai  + ++ ++ tq++++
    EGE27555.1  21 QTEAIDALNKASSENTQNIAK 41 
                   455666666666666666553 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0001
  Collagen_mid  41 anpvGtTlastgnvvtelgeavssagslVsaLgtgplaplapvttpvggvvstvgqavtsagttLt...tals.....sgpvqqltqqlssaitPit 129
                   + +  t  a+t++++t+ g+a+++ ++ +++Lgt ++   ++ +t++ + v+ + ++v+++ + +t   +++      +++++ l q  s    + t
    EGE27555.1 124 KASADTKFAATADAITKNGNAITKNAKSITDLGT-KVDGFDGRVTALDTKVNALDTKVNAFDGRITaldSKVEngmaaQAALSGLFQPYSVGKFNAT 219
                   5566678899999999999999999999999999.45556666666666666666666655544330003333000033444444444444444444 PP

  Collagen_mid 130 stvtgttqtvgtatglgapvn.gLLgtvGgavasaG 164
                   +++ g   + + a+g g  vn +L  + G a+++ G
    EGE27555.1 220 AALGGYGSKSAVAIGAGYRVNpNLAFKAGAAINTSG 255
                   444444444444455555555344455566666555 PP

>> CCDC84  Coiled coil protein 84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   6.7   0.00044       0.4     126     216 ..       5     107 ..       1     176 [. 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00044
      CCDC84 126 kdlesteekedefekeeaasiketesnrvevlqslleeeaqiseslgslaelletrkqqsalleslkesaskkstleestsvlqnpkgsh......... 215
                 +dl ++ e +d+++k+++++i + ++ + e  q+  +++a i ++++++ el++++ q+s+  + l + ++ +++   +++ + + +  +         
  EGE27555.1   5 QDLAAYNELQDAYAKQQTEAIDALNKASSENTQNIAKNQADIANNINNIYELAQQQDQHSSDIKTLAKASAANTDRIAKNKADADASFETltknqntli 103
                 5789999************************************99999988888877777777777655555555555444444432222222222222 PP

      CCDC84 216 ...q 216
                    +
  EGE27555.1 104 ekdK 107
                 2220 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  11.1    0.0011         1     119     255 ..      18     151 ..       5     202 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
      DUF572 119 ekeeeeaedamkkl..EkrtkdskkemealesLeeLqelnqrqakvdfd.anlelrkefreekkereeeeedeealkekislekikllpedeedekkak 214
                 +k+++ea da++k   E++ +  k+++++ ++++++ el q+q + + d + l+++ + ++++ ++++++  ++a  e ++ ++ +l+++d+e   ++k
  EGE27555.1  18 AKQQTEAIDALNKAssENTQNIAKNQADIANNINNIYELAQQQDQHSSDiKTLAKASAANTDRIAKNKAD--ADASFETLTKNQNTLIEKDKE---HDK 111
                 3344456666665322777777899999999999999888876443333122333333444444444444..333333343336666655444...467 PP

      DUF572 215 lle.gkteslfasseesaksakkkpt.kkesskekkkeslekk 255
                 l++  kt  ++a+++++ ++    +t    +++ ++ +++ k+
  EGE27555.1 112 LITaNKTA-IDANKASADTKF--AATaDAITKNGNAITKNAKS 151
                 77734442.333222222211..22211112223333333333 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.5     0.049        44      30      57 ..      20      47 ..      12      53 .. 0.86
   2 ?    5.5   6.6      0.02        18      12      69 ..      44     101 ..      39     114 .. 0.79
   3 ?    2.8   0.0      0.13   1.2e+02      37      65 ..     168     196 ..     163     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.049
  TMF_DNA_bd 30 klnntikkLrkknkelekeikelkkkle 57
                ++ ++i+ L+k  +e++++i++ +  ++
  EGE27555.1 20 QQTEAIDALNKASSENTQNIAKNQADIA 47
                6889999*********999999988776 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.02
  TMF_DNA_bd  12 eqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69 
                 + Ia+   +  +L+ ++++++  ik L k  + ++  i++ k   + + + l++ ++ 
  EGE27555.1  44 ADIANNINNIYELAQQQDQHSSDIKTLAKASAANTDRIAKNKADADASFETLTKNQNT 101
                 566666777779**************************99987666665555555554 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.13
  TMF_DNA_bd  37 kLrkknkelekeikelkkkleklekelee 65 
                  L+ k++ l+++++  + ++  l++++e+
  EGE27555.1 168 ALDTKVNALDTKVNAFDGRITALDSKVEN 196
                 68888889999999888888888888887 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  20.2    0.0032       2.9     283     403 ..       8     127 ..       2     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0032
     DUF3584 283 eevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkkyedadieklkadldqlpsirseleeleeeldaltekhqdvqeky 381
                 ++ +e + ++ +q+ +  d+l++a++e +q++ + +a++a+  +++ +l +q++++  +    +ka + + + i ++ ++++++++ lt++++ + ek 
  EGE27555.1   8 AAYNELQDAYAKQQTEAIDALNKASSENTQNIAKNQADIANNINNIYELAQQQDQHSSDIKTLAKASAANTDRIAKNKADADASFETLTKNQNTLIEKD 106
                 67789999***********************************************98655555678999************************997764 PP

     DUF3584 382 drrkqkikeeleeeleklkerl 403
                 ++   k+   +++++  +k+++
  EGE27555.1 107 KEH-DKLITANKTAIDANKASA 127
                 333.333344555555555553 PP

>> Phasin_2  Phasin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   9.9     0.039        35       5      38 ..      16      49 ..      11     104 .. 0.75
   2 ?    5.3   0.8     0.026        24       2      44 ..     111     153 ..     110     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.039
    Phasin_2  5 aaakknlealealaslalegaeklaelqleaara 38
                a ak+++ea+ al++++ e+ +++a+ q+++a+ 
  EGE27555.1 16 AYAKQQTEAIDALNKASSENTQNIAKNQADIANN 49
                679**************************99864 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.026
    Phasin_2   2 qfaaaakknlealealaslalegaeklaelqleaarasleesl 44 
                 +++ a+k++++a  a+a + +++  + ++++ +a+ +++   +
  EGE27555.1 111 KLITANKTAIDANKASADTKFAATADAITKNGNAITKNAKSIT 153
                 6788999999999999999999999999999999999987655 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  10.5     0.025        22      66     180 ..      42     160 ..       4     183 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.025
     UPF0242  66 ekskleekeaklteld...eglktkeealeelqe.eeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetiee 160
                 ++  ++++++++ el    ++++   ++l ++ + ++++ +++ +  +   e l+++++ L ek ++  + + + k +++++ a   +++   +  i++
  EGE27555.1  42 NQADIANNINNIYELAqqqDQHSSDIKTLAKASAaNTDRIAKNKADADASFETLTKNQNTLIEKDKEHDKLITANKTAIDANKASADTKFAATADAITK 140
                 233344444444444422233444444555444314444555566667777888888888888888888888888888888888888888888888888 PP

     UPF0242 161 qrsvlekrqdqieqLeskVr 180
                   + + k  + i +L +kV 
  EGE27555.1 141 NGNAITKNAKSITDLGTKVD 160
                 88888888888888888885 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8  24.3      0.86   7.7e+02     121     242 ..      11     130 ..       2     144 .. 0.50
   2 ?    7.3   0.8    0.0029       2.6     130     164 ..     141     195 ..     113     229 .. 0.54

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.86
     DUF4407 121 kelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...gtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalr 216
                 +el++ +a++ t+ +++l++  ++  ++i++ +a+++++ ++  + ++++    ++  t  +   +++++  ++ ++a+a  ++l++   ++ +l +++
  EGE27555.1  11 NELQDAYAKQQTEAIDALNKASSENTQNIAKNQADIANNINNIYELAQQQDqhsSDIKTLAKASAANTDRIAKNKADADASFETLTK---NQNTLIEKD 106
                 455555555566666666666666666666666666666666553333322332111111222223333333333333333333333...466677777 PP

     DUF4407 217 aelaeleaerakeraasqaaaaaddG 242
                 +e ++l ++ +++++a++a+a  d+ 
  EGE27555.1 107 KEHDKLITANKTAIDANKASA--DTK 130
                 777777666666666666533..333 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0029
     DUF4407 130 a....................ltaelaeleaqiaalqaeidaaearldalraeaq 164
                 +                    ++ ++++l+++++al+++++a + r++al  +++
  EGE27555.1 141 NgnaitknaksitdlgtkvdgFDGRVTALDTKVNALDTKVNAFDGRITALDSKVE 195
                 1244444444444445555556666666666666666666666666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2269  (0.126555); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 1892.40
//
Query:       EGE27556.1  [L=295]
Description: LysR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-37  128.6   0.1    2.6e-37  128.2   0.1    1.2  1  LysR_substrate  LysR substrate binding domain
    1.2e-13   50.7   0.0    2.3e-13   49.9   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.044   13.6   0.3      0.092   12.6   0.3    1.6  1  HTH_5           Bacterial regulatory protein, arsR family
       0.12   12.1   0.1       0.47   10.3   0.0    2.0  2  LexA_DNA_bind   LexA DNA binding domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.1   5.9e-41   2.6e-37       2     206 ..      88     291 ..      87     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 5.9e-41
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                      g++grLr++   + +  +l+p+l  +r +y +vel+ ++g  +e +++l +ge+Dl i++ + + +g+++ pL++++  lv++p hpLa +  +
      EGE27556.1  88 HGQAGRLRLASECHSCFDWLMPILNTYRGQYADVELDFSTGFDPEPHQMLVDGEIDLLITSSDFPIDGIDYLPLFTYESRLVVAPTHPLASQSVI 182
                     5789******************************************************************************************* PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                     +++dL d++li ++ + ++ d + ++l  +g++p    +++ +++l++lva+  G+a lp+++v ++ + g ++ +pl    ++ +ly+++r+++
      EGE27556.1 183 TPQDLCDQTLIAYPVEESHLDIIAQFLTPNGVAPANIRTTELTAMLIQLVASEHGVAALPDWVVLEYERKGWVISRPLGT-GVHCQLYAATRSSD 276
                     ********************************************************************************.************** PP

                     CCHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflre 206
                      +   ++ f+++l++
      EGE27556.1 277 AQLYFMQGFLNLLKD 291
                     999999999998876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0     5e-17   2.3e-13       1      59 [.       4      62 ..       4      63 .. 0.98

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 5e-17
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                +r+l+  +a+ ++gs++  A+e++l+ +a+s+q+k+LE+  + + ++R +r ++ T+aG
  EGE27556.1  4 IRHLQMMHALKRHGSLATTADEMNLTASAISHQLKELENYYDITMVNRRTRPISFTPAG 62
                699*******************************************************9 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   2.1e-05     0.092      21      41 ..      22      42 ..       5      43 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                HHHHHTS-HHHHHHHHHHHHH CS
       HTH_5 21 laeelglsqstvShHLkkLre 41
                 a+e++l+ s++Sh+Lk L++
  EGE27556.1 22 TADEMNLTASAISHQLKELEN 42
                489**************9986 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0001      0.47      27      64 ..      18      54 ..      10      55 .. 0.85
   2 ?   -2.0   0.0      0.73   3.3e+03      12      27 ..     202     217 ..     200     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0001
                   -HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG-CC CS
  LexA_DNA_bind 27 sireiaralglkSpsaveehLkaLerKGyierdpgkpR 64
                   s +  a++++l+ +sa+ ++Lk Le+   i + + + R
     EGE27556.1 18 SLATTADEMNLT-ASAISHQLKELENYYDITMVNRRTR 54
                   677889******.9***********9777777776666 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.73
                    HHHHHHHHHHHSS--- CS
  LexA_DNA_bind  12 ldlikasieetgypPs 27 
                    ld+i ++++ +g +P 
     EGE27556.1 202 LDIIAQFLTPNGVAPA 217
                    78999999999*9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2206.18
//
Query:       EGE27557.1  [L=214]
Description: DedA family membrane protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-21   77.1   6.9    1.5e-21   77.1   6.9    1.9  3  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.012   15.7   7.0      0.027   14.6   1.7    2.7  2  Osw5         Outer spore wall 5


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.2   1.1e+04      65      80 ..      24      39 ..      18      47 .. 0.56
   2 !   77.1   6.9   1.7e-25   1.5e-21       1     119 [.      49     174 ..      49     175 .. 0.96
   3 ?   -2.4   0.2      0.69   6.2e+03      68      79 ..     190     201 ..     181     206 .. 0.47

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
  SNARE_assoc 65 rygflallllrllpiv 80
                  yg ++  +l l+ +v
   EGE27557.1 24 DYGMWIYGILFLIIFV 39
                 4555555555555544 PP

  == domain 2  score: 77.1 bits;  conditional E-value: 1.7e-25
  SNARE_assoc   1 lPsevllvaaGvlf......glllgtlvtslgallGaslayllgrylgr..kalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaG 90 
                  lP++ ll+aaG+l+      +++l ++++sl+a+lG++l+y++g+y+g+     ++++++++++   ++++  +g ++++l+r++p+  r+++++vaG
   EGE27557.1  49 LPGDSLLFAAGALAavtgaiNPILLIILLSLAAVLGDTLNYHIGKYIGPkvFVTNSRWINHQHLVNTQKFFATHGKKTIILARFIPFA-RTFAPFVAG 145
                  699**********99999999999*************************77778899*****************************98.********* PP

  SNARE_assoc  91 ltrvsfkrFflatfiGsipwalvyaylGs 119
                  + +++++ F+ +++iG  +w++ +++lG+
   EGE27557.1 146 AGSMHYRYFLSYNIIGGCLWIMSFVLLGY 174
                  ****************************8 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.69
  SNARE_assoc  68 flallllrllpi 79 
                  ++ ++++ +lp+
   EGE27557.1 190 IFGIIIFSILPV 201
                  333444444444 PP

>> Osw5  Outer spore wall 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.7     3e-06     0.027       5      36 ..      28      60 ..      25      66 .. 0.90
   2 ?    3.2   0.3     0.011        97      30      44 ..     194     208 ..     190     214 .] 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3e-06
        Osw5  5 liYlvlFliigviaslfilPLL.giSfifatgv 36
                 iY +lFlii v   l+++P+L g S++fa g 
  EGE27557.1 28 WIYGILFLIIFVETGLVVMPFLpGDSLLFAAGA 60
                69********************778*****985 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.011
        Osw5  30 fifatgvvvfgFlSn 44 
                 +if+++ v+f+F+ +
  EGE27557.1 194 IIFSILPVIFSFIKQ 208
                 59**********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1734.21
//
Query:       EGE27558.1  [L=122]
Description: SmpA/OmlA family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-21   75.4   0.0      3e-21   75.0   0.0    1.2  1  SmpA_OmlA  SmpA / OmlA family
     0.0064   16.9   0.6      0.012   16.0   0.6    1.5  1  LPAM_1     Prokaryotic membrane lipoprotein lipid attachment 
  ------ inclusion threshold ------
       0.17   11.9   0.0       0.25   11.4   0.0    1.2  1  DUF2198    Uncharacterized protein conserved in bacteria (DUF


Domain annotation for each model (and alignments):
>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0     5e-25     3e-21       1      70 [.      33     111 ..      33     112 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 5e-25
                 .HHTTSHHHHT--TT-BHHHHHHHH-S-SEE-SSSSSEEEEEEEETTE..............EEEEEEEE-TTSBEEEE CS
   SmpA_OmlA   1 GnvvtqeqvdqlkpGmtkeqVryllGsPsltdtfdpnrwdYvynfkrggka.........veqqvlavyFdddglvrsi 70 
                 G+ ++ +q +q+++Gm+ +qV+yllGsP l+dt+ pnrwdY+y+++ g+           + +q l ++F+++g+v++i
  EGE27558.1  33 GTPLSAAQANQIQVGMNANQVLYLLGSPALRDTLAPNRWDYIYDHTAGTDGkrqkksdikNASQYLSIHFNNQGIVTRI 111
                 889999*****************************************966677888999888**************987 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.6   2.1e-06     0.012       1      18 []       1      21 [.       1      21 [. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.1e-06
      LPAM_1  1 MKKi...llalgalllLsGCs 18
                M K+    + lg++l+L+GCs
  EGE27558.1  1 MQKMtykAVGLGLVLALTGCS 21
                7777777789**********9 PP

>> DUF2198  Uncharacterized protein conserved in bacteria (DUF2198)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.2e-05      0.25      18      44 ..       3      28 ..       1      32 [. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
     DUF2198 18 rvTynhyvGllltvaLivasvykgYtk 44
                ++Ty + vGl l++aL   s+++ Yt 
  EGE27558.1  3 KMTY-KAVGLGLVLALTGCSAFRVYTI 28
                78**.********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 926.16
//
Query:       EGE27559.1  [L=30]
Description: hypothetical protein EA1_01667 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 232.36
//
Query:       EGE27560.1  [L=146]
Description: ferric uptake regulation protein Fur [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-42  145.0   1.7    1.2e-42  144.8   1.7    1.0  1  FUR            Ferric uptake regulator family
     0.0064   16.4   0.0      0.015   15.2   0.0    1.6  1  MarR           MarR family
     0.0086   16.0   0.0      0.014   15.4   0.0    1.3  1  HTH_12         Ribonuclease R winged-helix domain
  ------ inclusion threshold ------
      0.013   15.6   1.8        0.3   11.3   0.1    2.3  2  SR1P           SR1 protein
      0.033   14.1   0.1      0.058   13.4   0.1    1.4  1  PadR           Transcriptional regulator PadR-like family
      0.042   13.8   0.1       0.28   11.2   0.0    2.2  3  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.045   13.6   0.0       0.11   12.4   0.0    1.8  1  TrmB           Sugar-specific transcriptional regulator TrmB
      0.091   12.8   0.1       0.15   12.1   0.1    1.3  1  zf-C3HC        C3HC zinc finger-like
      0.092   13.4   0.0       0.14   12.8   0.0    1.3  1  HTH_32         Homeodomain-like domain
      0.098   12.2   0.8       0.15   11.6   0.1    1.7  2  TF_Zn_Ribbon   TFIIB zinc-binding
        0.1   12.9   0.0        2.4    8.5   0.0    2.1  2  HTH_Tnp_Tc3_2  Transposase
       0.11   12.5   0.1       0.13   12.3   0.1    1.1  1  Replic_Relax   Replication-relaxation


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   1.7   8.1e-46   1.2e-42       1     120 []      10     130 ..      10     130 .. 0.99

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 8.1e-46
                 HTTHCHHHHHHHHHHHHHHHSS.SBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESSSSSEEEEEETTT--EEEE--HHHH CS
         FUR   1 eaglklTkqRekilevleksee.hlsaeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelakkehhdhlicekCgkviefkddeie 98 
                 +aglk+T +R kile+le+ e+ h+sae+vy++l  ++++++laTVYr+L+++e+ag+v++++fe++ s++e++++ehhdhl+c  Cgk+ ef++  ie
  EGE27560.1  10 KAGLKVTLPRIKILELLENAEHhHMSAEDVYRALAAQGEDVGLATVYRVLTQFEQAGIVERHNFENNLSVFEIVQDEHHDHLVCDVCGKIVEFHNSVIE 108
                 689*******************9**************************************************************************** PP

                 HHHHHHHHHTT-EEEEEEEEEE CS
         FUR  99 kiqeeiaekegfklvshrlely 120
                 + q ++a++++fkl+ h+l ly
  EGE27560.1 109 EEQFKVAKAHNFKLSGHSLILY 130
                 *******************987 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     1e-05     0.015       2      50 ..      16      71 ..      15      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
                -HHHHHHHHHHHHSTTEEHH......HHHHHH.TS-HHHHHHHHHHHHHTTSEEEE CS
        MarR  2 tltqfviLrilyeqgplsvs......eLakkl.gvskstvtrvldrLekkGlieRs 50
                tl++++iL++l++ + + +s       La +   v  +tv rvl++ e++G +eR 
  EGE27560.1 16 TLPRIKILELLENAEHHHMSaedvyrALAAQGeDVGLATVYRVLTQFEQAGIVERH 71
                899999*********999999999999999852699*******************6 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.2e-06     0.014       1      52 [.      20      72 ..      20      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.2e-06
      HTH_12  1 veILkilaesd.kpigakeiaeeLkkrgydigeravRyrLrkleergltrrvg 52
                ++IL++l++++ + ++a+ +   L  +g+d+g  +v + L   e+ g+++r+ 
  EGE27560.1 20 IKILELLENAEhHHMSAEDVYRALAAQGEDVGLATVYRVLTQFEQAGIVERHN 72
                67999998765246*************************************86 PP

>> SR1P  SR1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3     0.053        79       5      15 ..      92     102 ..      90     114 .. 0.83
   2 ?   11.3   0.1    0.0002       0.3      23      34 ..     128     139 ..     127     142 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.053
        SR1P   5 vCqtCnatIdh 15 
                 vC  C+++++ 
  EGE27560.1  92 VCDVCGKIVEF 102
                 9*******985 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0002
        SR1P  23 tLYgtCnqceCk 34 
                 +LYg+C+++eC 
  EGE27560.1 128 ILYGVCDSPECL 139
                 7**********6 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.9e-05     0.058       2      51 ..      23      72 ..      22      82 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.9e-05
                HHHHCCS-EEHH...HHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEE CS
        PadR  2 LalleeqpsyGy...eiikeleelsegllelseGslYpaLkrLekeglvesew 51
                L+lle+ + + +   ++ ++l++   g +++  +++Y++L+++e+ g+ve+++
  EGE27560.1 23 LELLENAEHHHMsaeDVYRALAAQ--G-EDVGLATVYRVLTQFEQAGIVERHN 72
                666655554443111455666666..7.899******************9986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.88   1.3e+03      43      61 ..       6      24 ..       4      29 .. 0.75
   2 ?   -1.9   0.0       2.4   3.5e+03      28      43 ..      29      44 ..      19      45 .. 0.76
   3 ?   11.2   0.0   0.00019      0.28      36      54 ..      53      71 ..      49      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.88
                HHHHHTTSEE.ETEEEEES- CS
   HTH_Crp_2 43 seLkreglis.rgrririld 61
                ++L+++gl     r i+il 
  EGE27560.1  6 KDLRKAGLKVtLPR-IKILE 24
                68999999773566.88875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
                HHHTTSSHHHHHHHHH CS
   HTH_Crp_2 28 AsmlGltretvsrils 43
                A++  ++ e v r+l+
  EGE27560.1 29 AEHHHMSAEDVYRALA 44
                6667788888888875 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00019
                HHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 36 etvsrilseLkreglisrg 54
                 tv r+l++++++g+++r+
  EGE27560.1 53 ATVYRVLTQFEQAGIVERH 71
                69**************974 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.3e-05      0.11      33      56 ..      49      72 ..      20      85 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.3e-05
                TSSCHCHHHHHHHHHHCTSEEEES CS
        TrmB 33 gvprskvYevLrsLedkGlVerek 56
                +v  ++vY+vL + e++G+Ver  
  EGE27560.1 49 DVGLATVYRVLTQFEQAGIVERHN 72
                56679****************975 PP

>> zf-C3HC  C3HC zinc finger-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   9.9e-05      0.15      40      75 ..      87     121 ..      78     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.9e-05
     zf-C3HC  40 skdrlkCevCgaslvlklksseeesdeqlnkklaek 75 
                  +d+l C+vCg+ + +  +s +ee++++++k+ + k
  EGE27560.1  87 HHDHLVCDVCGKIVEFH-NSVIEEEQFKVAKAHNFK 121
                 589*************9.999999999999887655 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.4e-05      0.14      36      73 .]      21      59 ..       9      59 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.4e-05
      HTH_32 36 riiallreep..rWsprqlaarlaeregvkvShstvyriL 73
                +i++ll+++   ++s++ + ++l + +g++v   tvyr+L
  EGE27560.1 21 KILELLENAEhhHMSAEDVYRAL-AAQGEDVGLATVYRVL 59
                688888543356***********.777799********98 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0001      0.15       8      32 ..      78     103 ..      76     113 .. 0.85
   2 ?   -3.7   0.1       5.8   8.7e+03       4       9 ..     136     141 ..     136     144 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
                   CEE.CHEETSTTCEEESSSSBEEEEC CS
  TF_Zn_Ribbon   8 stn.lveDpergelvCtdCGlVledn 32 
                   s + +v D+ +  lvC  CG ++e +
    EGE27560.1  78 SVFeIVQDEHHDHLVCDVCGKIVEFH 103
                   56668999999999*********976 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.8
                   TTTTCE CS
  TF_Zn_Ribbon   4 PnCgst 9  
                   P+C  +
    EGE27560.1 136 PECLKS 141
                   899865 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.11   1.6e+02      38      54 ..       7      23 ..       4      31 .. 0.86
   2 ?    8.5   0.0    0.0016       2.4      12      42 ..      32      62 ..      21      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.11
  HTH_Tnp_Tc3_2 38 rLrkaglkkrkprkkpl 54
                    Lrkaglk + pr k+l
     EGE27560.1  7 DLRKAGLKVTLPRIKIL 23
                   69**********99986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0016
  HTH_Tnp_Tc3_2 12 PritlreLanelkeeGksvsreTirrrLrka 42
                    +++++++ + l+ +G+ v  +T+ r+L ++
     EGE27560.1 32 HHMSAEDVYRALAAQGEDVGLATVYRVLTQF 62
                   579*********999*************876 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   8.9e-05      0.13       5      46 ..      29      74 ..      23      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-05
  Replic_Relax  5 aehrvlTtrqiarllfashra....tarrrLarLrelgllsrlrkr 46
                  aeh +++++ ++r+l a+++     t++r+L+++++ g+++r++ +
    EGE27560.1 29 AEHHHMSAEDVYRALAAQGEDvglaTVYRVLTQFEQAGIVERHNFE 74
                  69****************************************7654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1134.23
//
Query:       EGE27561.1  [L=349]
Description: type IV pilus retraction ATPase PilT [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-47  162.0   1.7      2e-47  161.6   1.7    1.1  1  T2SSE            Type II/IV secretion system protein
    2.7e-05   23.2   0.1    5.3e-05   22.3   0.1    1.4  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
    9.3e-05   22.7   0.1    0.00021   21.6   0.1    1.5  1  AAA_22           AAA domain
    0.00023   20.5   0.1    0.00039   19.8   0.1    1.3  1  Zeta_toxin       Zeta toxin
    0.00028   21.0   0.1    0.00044   20.4   0.1    1.4  1  DUF87            Helicase HerA, central domain
    0.00029   20.9   0.0     0.0005   20.1   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
     0.0003   21.2   0.3    0.00082   19.8   0.3    2.0  1  AAA_16           AAA ATPase domain
    0.00045   19.9   0.0      0.001   18.8   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
     0.0008   19.9   0.0     0.0014   19.2   0.0    1.3  1  ABC_tran         ABC transporter
     0.0012   19.2   0.5      0.005   17.2   0.5    2.2  1  AAA_19           AAA domain
     0.0014   18.6   0.1     0.0046   17.0   0.1    1.9  1  AAA_14           AAA domain
     0.0017   18.1   0.5      0.017   14.9   0.1    2.3  2  AAA_30           AAA domain
     0.0023   17.8   0.0     0.0036   17.2   0.0    1.3  1  TK               Thymidine kinase
     0.0024   18.4   1.2     0.0044   17.5   0.9    1.5  1  AAA_23           AAA domain
     0.0031   16.9   2.1     0.0038   16.6   0.4    2.0  3  FtsK_SpoIIIE     FtsK/SpoIIIE family
     0.0091   15.9   0.4      0.038   13.9   0.1    2.2  2  NACHT            NACHT domain
     0.0093   15.6   0.1      0.027   14.1   0.1    1.9  1  SRP54            SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.025   14.1   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
      0.014   14.9   0.1       0.04   13.4   0.0    1.6  1  KTI12            Chromatin associated protein KTI12
      0.017   14.6   0.2       0.11   11.9   0.0    2.2  2  PhoH             PhoH-like protein
      0.022   14.0   0.0      0.044   13.0   0.0    1.4  1  KAP_NTPase       KAP family P-loop domain
      0.025   14.3   0.0      0.055   13.2   0.0    1.6  1  Sigma54_activat  Sigma-54 interaction domain
      0.026   14.7   0.0       0.05   13.8   0.0    1.5  1  AAA_33           AAA domain
       0.03   14.3   0.1      0.084   12.9   0.1    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
      0.035   14.0   0.0      0.054   13.4   0.0    1.4  1  ATPase_2         ATPase domain predominantly from Archaea
      0.037   14.0   0.7       0.84    9.5   0.2    2.4  2  NTPase_1         NTPase
      0.037   13.8   0.0      0.095   12.4   0.0    1.8  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.045   13.1   0.0      0.086   12.2   0.0    1.5  1  ATPase           KaiC
      0.047   12.9   0.0       0.23   10.6   0.0    1.9  2  NTPase_P4        ATPase P4 of dsRNA bacteriophage phi-12
      0.051   13.4   0.0      0.073   12.9   0.0    1.3  1  DUF3313          Protein of unknown function (DUF3313)
      0.052   14.0   0.1       0.09   13.2   0.1    1.5  1  AAA              ATPase family associated with various cellul
      0.055   13.1   0.1       0.12   11.9   0.1    1.7  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.062   12.4   0.0        0.1   11.7   0.0    1.4  1  DUF815           Protein of unknown function (DUF815)
      0.072   13.5   0.0       0.17   12.3   0.0    1.6  1  RNA_helicase     RNA helicase
      0.077   12.2   0.0       0.11   11.7   0.0    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.086   12.7   0.0       0.21   11.4   0.0    1.8  1  Helicase_RecD    Helicase
      0.089   12.5   0.0       0.16   11.7   0.0    1.4  1  PRK              Phosphoribulokinase / Uridine kinase family
        0.1   12.4   0.3       0.41   10.4   0.1    1.9  2  RecC_C           RecC C-terminal domain
        0.1   12.4   0.1       0.23   11.2   0.1    1.6  1  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.11   12.1   0.0       0.19   11.3   0.0    1.3  1  AAA_27           AAA domain
       0.14   11.8   0.1        2.8    7.5   0.1    2.2  2  Ras              Ras family


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   1.7   4.5e-50     2e-47      10     269 ..      14     275 ..       7     279 .. 0.89

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 4.5e-50
       T2SSE  10 ddekvsdihvekpervkvrervdg.ielreveelekaalerlisriaalakldiseerplqdarlp.ekgvrlrvvllPvvagealviRkksakeltld 106
                 +++++sd+h++ ++ +++  r+dg +   ++  ++ + ++++++ ++  +  + +++++  d  l+ ++ +r+rv++   ++g a+v R  +++  +l+
  EGE27561.1  14 HQKNASDLHLSAQQPIML--RIDGnLLPMDITPIDTDGIMQMLRLVMDDTDYHQWQHNLEHDFVLSlDGIARFRVNVFFQAHGAAAVFRVIKTHIPSLQ 110
                 5899**********9999..5555489999***********************************988999******************8888888*** PP

       T2SSE 107 dlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks.derivtvEDpvEiqleganqvqlnak...kakvtfadllraaLRlrPD 201
                 +l+++e + + + ++ +      gl+l++G+TgsGK+t+l + +  in++ +++i+t+EDp+E++ + +  + +n++   k +  f+++lr+aLR +PD
  EGE27561.1 111 QLSYDEYVYDSMLKIAKLQ---AGLVLITGATGSGKSTTLASFIDHINQHqKKHIITIEDPIEYEHSSKL-SLINQRqvgKDTRSFQNALRSALREDPD 205
                 **********999999888...9**************************9899***********976543.33444456777999************** PP

       T2SSE 202 rimvGEiRdketlei.lkAvnTGHlgslsTlHansaagalerLeqlgae....veaaelkssilavvdivvrl 269
                 +i+vGE+Rd et+++ l A++TGHl+ l+TlH+ +a ++++r+ +        + +++l++s+ av  +++rl
  EGE27561.1 206 VILVGELRDLETIRLaLTAAETGHLV-LATLHTVNAPKSIDRIIEVFDAgekhMIRTMLADSLKAV--VAQRL 275
                 **************************.*****************9997755566666666666666..66776 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   1.2e-07   5.3e-05      18      48 ..     133     163 ..     125     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.2e-07
  TrwB_AAD_bind  18 ilivGttGsGKtqalekllrairargdraiv 48 
                    +li+G+tGsGK+++l +++++i++ ++++i+
     EGE27561.1 133 VLITGATGSGKSTTLASFIDHINQHQKKHII 163
                    79****************************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   4.7e-07   0.00021       4      66 ..     129     202 ..     126     242 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4.7e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..........erpevvfvtlpsst.sskdllrellralgl 66 
                 +ag++++tG +G+GK+t+l+ + +  ++++k             +++++ +++  + + + +++ ++l +al +
  EGE27561.1 129 QAGLVLITGATGSGKSTTLASFIDHINQHQKKHIitiedpieyeHSSKLSLINQRQVGkDTRSFQNALRSALRE 202
                 6899********************99887655446676666664444444555555555666666666665555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   8.9e-07   0.00039      18     140 ..     132     247 ..     118     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.9e-07
  Zeta_toxin  18 lillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelhPeyeeilkadpkkaseltqkdaselvekllqeaiengyniivegtlrspdvvkklae 115
                 l+l+ G++G+GKs++++ + d ++ +q++ +   +D +   h        + +  + +++ kd++ +++ l+  a+ +  ++i+ g lr+ ++++ la 
  EGE27561.1 132 LVLITGATGSGKSTTLASFIDHINqHQKKHIITIEDPIEYEHSS------KLSLINQRQVGKDTRSFQNALR-SALREDPDVILVGELRDLETIR-LAL 222
                 89********************9988888888889999888844......4556778999999999977665.56666789*************9.666 PP

  Zeta_toxin 116 alkkaGYevevvvvavkkelSrlgv 140
                  +++ G+ v + + +v+   S+ ++
  EGE27561.1 223 TAAETGHLVLATLHTVNAPKSIDRI 247
                 66677**999999888888887665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1     1e-06   0.00044      26      68 ..     133     175 ..     113     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1e-06
       DUF87  26 lAilgsTGsGKSntvavLleellekkgatililDpHGEYgkal 68 
                 ++i g TGsGKS+t a+ ++ + + ++ +i+ +    EY + +
  EGE27561.1 133 VLITGATGSGKSTTLASFIDHINQHQKKHIITIEDPIEYEHSS 175
                 7899*******************97788888664445666655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.1e-06    0.0005      13     118 ..     120     242 ..     103     267 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.1e-06
                 HHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S..................-EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS- CS
      ResIII  13 enlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.............kflflvprkslleqtleefkkflseayke.....igkkvsgdk 93 
                 +++l k+ + +   +li  aTG+GK+ ++a++i+++ +++k+                l l++++++ + t+  f++ l +a  e       +++++ +
  EGE27561.1 120 DSML-KIAKLQAGLVLITGATGSGKSTTLASFIDHINQHQKKHiitiedpieyehsSKLSLINQRQVGKDTR-SFQNALRSALREdpdviLVGELRDLE 216
                 4444.33324555678*********************98665455555555555555555555555555554.33333333333334444333333333 PP

                 B--........-SEEEEEHHHHHHTH CS
      ResIII  94 kka.kekdstnkkilvttiqsldads 118
                  ++    ++++ +++++t ++++a++
  EGE27561.1 217 TIRlALTAAETGHLVLATLHTVNAPK 242
                 33367777778888888888877766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.3   1.9e-06   0.00082      24      63 ..     130     172 ..     120     334 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.9e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekd...ggiflrgkcdql 63 
                  +lvl++G+ G+GKs+ + ++ ++++++   ++i+++   +  
  EGE27561.1 130 AGLVLITGATGSGKSTTLASFIDHINQHqkkHIITIEDPIEYE 172
                 479**********************999554344433333333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.3e-06     0.001      11      39 ..     118     147 ..     110     152 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.3e-06
      AAA_29  11 tfdg..htieidlkgatlltGpsGsGKSTll 39 
                  +d   + +++ ++g +l+tG++GsGKST l
  EGE27561.1 118 VYDSmlKIAKL-QAGLVLITGATGSGKSTTL 147
                 55555233344.4779*************76 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.1e-06    0.0014      13      80 ..     132     213 ..     125     269 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.1e-06
                 EEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................x RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkp.teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..................e 80 
                 +v i+G +G+GKSt l+ ++ + ++ ++ +i   ++++++    + +++++ + q  q+ ++++  +n                   
  EGE27561.1 132 LVLITGATGSGKSTTLASFIDHINQhQKKHIITIEDPIEY----EHSSKLSLINQR-QVGKDTRSFQNalrsalredpdvilvgelR 213
                 688**********999988888776366666444677777....666677777777.444444444444555555555555555550 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   1.1e-05     0.005       5      40 ..     126     160 ..     122     265 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.1e-05
      AAA_19   5 vealkekvllvtaGpGtGKTrvlkhivallvelggv 40 
                 + +l+++++l+t+  G+GK+++l   + ++++ ++ 
  EGE27561.1 126 A-KLQAGLVLITGATGSGKSTTLASFIDHINQHQKK 160
                 4.8999************************998865 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1     1e-05    0.0046       4      47 ..     132     174 ..     129     225 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikell.vkkesilyinldderdkkla 47 
                 +++itGa  +GK+t l  +i++    +k++i+ i  +d+ +++++
  EGE27561.1 132 LVLITGATGSGKSTTLASFIDHINqHQKKHIITI--EDPIEYEHS 174
                 689*****************88776666666655..444443332 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.8e-05     0.017      13      50 ..     125     163 ..     120     166 .. 0.80
   2 ?    0.5   0.0      0.95   4.2e+02     101     131 ..     188     218 ..     183     266 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.8e-05
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaa.ggrvi 50 
                 +++ ++ ++++tG+ G+GK+t+l++  ++++++ ++++i
  EGE27561.1 125 IAKLQAGLVLITGATGSGKSTTLASFIDHINQHqKKHII 163
                 566677799****************98888888455555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.95
      AAA_30 101 dtkqlaallkaaekagakvilvGDerQlasV 131
                 dt+++++ l++a +++  vilvG  r l+ +
  EGE27561.1 188 DTRSFQNALRSALREDPDVILVGELRDLETI 218
                 788899999999999999***9998877766 PP

>> TK  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.2e-06    0.0036       3     119 ..     132     242 ..     130     263 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.2e-06
          TK   3 ielilgpmfaGKsteLlrrvkryqlaekkvvvikaakdnRysegkvvthdgisleakksktssleeikeeleeedvdvvlvDEaqFfeqdivelsekla 101
                 + li+g+  +GKst+L   + ++++ +kk + i+ +    y+++  +  + i+++++ ++t s+++  +++ +ed dv+lv E + +e   ++l+ + a
  EGE27561.1 132 LVLITGATGSGKSTTLASFIDHINQHQKKHI-ITIEDPIEYEHS--SKLSLINQRQVGKDTRSFQNALRSALREDPDVILVGELRDLE--TIRLALTAA 225
                 789*****************99988776654.444444455553..344555566666799******9999999**********9999..677777777 PP

          TK 102 negkivivagLdtdFerk 119
                 ++g  v+ a L+t  + k
  EGE27561.1 226 ETGHLVL-ATLHTVNAPK 242
                 7776665.5666655555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.9     1e-05    0.0044      17      37 ..     128     148 ..     123     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1e-05
      AAA_23  17 FskgltlItGpNGaGKTTild 37 
                 +  gl+lItG +G+GK+T l 
  EGE27561.1 128 LQAGLVLITGATGSGKSTTLA 148
                 578***************986 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.9     3e+03     146     165 ..      51      72 ..      45     114 .. 0.45
   2 !   16.6   0.4   8.7e-06    0.0038      40      60 ..     131     151 ..     103     155 .. 0.86
   3 ?   -2.7   0.0       6.7   2.9e+03      91     116 ..     233     258 ..     220     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.9
                   ---B-TT-.............. CS
  FtsK_SpoIIIE 146 fgdvflvlDnyddlaaene..r 165
                   ++++ lv+D++d  + + +   
    EGE27561.1  51 MQMLRLVMDDTDYHQWQHNleH 72 
                   4555566666554443333331 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 8.7e-06
                   .SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  40 shllvaGatgsGKStalntLi 60 
                   + +l+ GatgsGKSt+l ++i
    EGE27561.1 131 GLVLITGATGSGKSTTLASFI 151
                   569**************9998 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.7
                   TTBSS.S-B-SHHHHHHHHHHHHHHH CS
  FtsK_SpoIIIE  91 phllsvavatdperalraleeLvkem 116
                   + l +v+ +++++r+++++++ +k+m
    EGE27561.1 233 ATLHTVNAPKSIDRIIEVFDAGEKHM 258
                   45566777777777777777777766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       5.4   2.3e+03      84      99 ..      50      70 ..      17     109 .. 0.69
   2 !   13.9   0.1   8.7e-05     0.038       2      30 ..     132     160 ..     131     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.4
                E.....EEEE-STT-SS-TCH CS
       NACHT 84 L.....lilDglDelvtdlgq 99
                      l++D+ D+ +++ + 
  EGE27561.1 50 ImqmlrLVMDDTDYHQWQHNL 70
                055556788888877776554 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 8.7e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklp 30 
                 lv+++G+ GsGK+t l+++++ + + + +
  EGE27561.1 132 LVLITGATGSGKSTTLASFIDHINQHQKK 160
                 699*******************9998865 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   6.2e-05     0.027       4      38 ..     133     167 ..     130     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.2e-05
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD 38 
                 +l+ G +G+GK ttla   +++++++kk ++   D
  EGE27561.1 133 VLITGATGSGKSTTLASFIDHINQHQKKHIITIED 167
                 899**********************9999987766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.8e-05     0.025      20      62 ..     117     159 ..     103     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.8e-05
       AAA_7  20 vrysyllelllknkkpvllvGptGtGKtviikdllkkldkeky 62 
                   y+ +l+    +   vl++G tG+GK++++ ++++++++ + 
  EGE27561.1 117 YVYDSMLKIAKLQAGLVLITGATGSGKSTTLASFIDHINQHQK 159
                 55666666666677789****************9999994332 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.2e-05      0.04       3      57 ..     132     190 ..     131     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.2e-05
                 EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.TTSS....S--GGGHHHHH CS
       KTI12   3 LvvltGlPssGKstrakeLakaleeekrsvvviddeslgiekds....ykdsakekalR 57 
                 Lv++tG   sGKst  + + +++++++++ ++  ++ ++ e++s     ++ +  k++R
  EGE27561.1 132 LVLITGATGSGKSTTLASFIDHINQHQKKHIITIEDPIEYEHSSklslINQRQVGKDTR 190
                 9************************9999999999999988877444333333344444 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00025      0.11      17      68 ..     127     180 ..     113     229 .. 0.75
   2 ?   -0.2   0.0       1.3   5.6e+02      54     107 ..     291     347 ..     283     349 .] 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00025
                 H.H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T..T----SS CS
        PhoH  17 k.kndivfaiGpaGtGKtylavalavealkkkkvkriiltrpavea..geelGfl 68 
                 k +  +v ++G +G+GK+  ++a  ++ +++++ k+ii +   +e     +l   
  EGE27561.1 127 KlQAGLVLITGATGSGKST-TLASFIDHINQHQKKHIITIEDPIEYehSSKLSLI 180
                 356779***********85.78889**************9999987334455544 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
                 EEE-S--T...T----SS---------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEE CS
        PhoH  54 ltrpavea...geelGflpgdleekvdpylrplydaLkdllgaekvekllekgkiev 107
                    pav     ++++  lp  +++ +   +  l+++L+ l ++ k++ ++ +++i++
  EGE27561.1 291 THTPAVAHlirENKISQLPSVIQTSLTQGMIDLTQSLSRLAETGKITPATANEQINM 347
                 555777555668999999999999999999999999999999999999999998876 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0    0.0001     0.044      23      64 ..     133     172 ..     116     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0001
  KAP_NTPase  23 vgLygkWGsGKssllnkledelkefakpvrflfaefnawsfk 64 
                 v ++g+ GsGKs+ l++++d ++++  +++++++  ++  ++
  EGE27561.1 133 VLITGATGSGKSTTLASFIDHINQH--QKKHIITIEDPIEYE 172
                 679**********************..666666655666555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00013     0.055      17      57 ..     124     166 ..     113     200 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00013
                      HHCTSS.S-EEEECSTTSSHH.HHHHHHHHHSTTTTS-EEEEE CS
  Sigma54_activat  17 kvaktd.lsvlitGesGtGKe.llaraiheaskrkekpfvavn 57 
                      k+ak +   vlitG +G+GK+ +la+ i + +++++k++++++
       EGE27561.1 124 KIAKLQaGLVLITGATGSGKStTLASFIDHINQHQKKHIITIE 166
                      5555552579**********73589999888888888888876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   0.00011      0.05       1      93 [.     132     226 ..     132     263 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00011
      AAA_33   1 lvllvGlpGsGKstlaerl......lkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklar 93 
                 lvl+ G+ GsGKst + +       ++k + ++++ +++++   +    s+ ++ +v ++++ ++ + +r+al++  +vil   +++ ++ +  l +a+
  EGE27561.1 132 LVLITGATGSGKSTTLASFidhinqHQKKHIITIEDPIEYEHSSK---LSLINQRQVGKDTRSFQ-NALRSALREDPDVILVGELRDLETIRLALTAAE 226
                 7999*********99998767666666666*******99887775...35555666788888776.777788888888888877777666666666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00019     0.084       2     103 ..     133     239 ..     132     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00019
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHH.....HH--B--.........--------.G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqltrdtteed.....lkgrreikngttslvdsplvraar.egeilvlDEveraesevlnsLlslleer 92 
                 vl+ G++G+gKs+   ++   +   ++ +++ + + +++e+     l+ +r++ +++t+  +++l  a r  +++++++E+   + e++   l+  e+ 
  EGE27561.1 133 VLITGATGSGKSTTLASFIDHInqHQKKHIITIEDPIEYEHssklsLINQRQV-GKDTRSFQNALRSALReDPDVILVGELR--DLETIRLALTAAETG 228
                 799*******************99999******99999886444448888888.5555555567888888889999999998..566666666666666 PP

                 EEE..-SSSEE CS
       AAA_5  93 rllleeggelv 103
                 +l l+ ++++ 
  EGE27561.1 229 HLVLATLHTVN 239
                 66666665555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   0.00012     0.054      20      82 ..     130     196 ..     120     273 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00012
    ATPase_2  20 neiyfiYGpegsGKtaLlkeiienledkdk.yviyy.ialreesiskldefie...eeeekkklekal 82 
                 +  ++i+G  gsGK++ l  +i   ++++k ++i + ++++ e +skl+   +     ++ +++++al
  EGE27561.1 130 AGLVLITGATGSGKSTTLASFIDHINQHQKkHIITIeDPIEYEHSSKLSLI-NqrqVGKDTRSFQNAL 196
                 45689******************9966666244444144555555555544.4343233333344444 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2    0.0019      0.84       2      27 ..     133     158 ..     132     165 .. 0.87
   2 ?    2.7   0.0      0.24     1e+02      78     142 ..     189     245 ..     156     271 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0019
                 EEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssg 27 
                 v+iTG  G+GK+T +   ++ +++++
  EGE27561.1 133 VLITGATGSGKSTTLASFIDHINQHQ 158
                 79*************99999987665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHH-EEEE---STTGGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHH CS
    NTPase_1  78 vesfeelalealrkalseadviviDEiGkmElkskkfkeaveevLksekpvlavihrrkdlalve 142
                 + sf++   +alr   +++dvi++ E   +E     +     ++ +++  vla++h  + ++ ++
  EGE27561.1 189 TRSFQNALRSALR---EDPDVILVGELRDLETIRLAL-----TAAETGHLVLATLHTVNAPKSID 245
                 4445554444444...578888888877777643333.....33456666666666665444454 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00022     0.095       2      29 ..     134     167 ..     133     232 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00022
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts......liltvnr 29 
                      ++ G+ G+GKSt + +++++       +i+t+  
       EGE27561.1 134 LITGATGSGKSTTLASFIDHInqhqkkHIITIED 167
                      799***************9934333333333333 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0002     0.086      18      60 ..     129     169 ..     102     202 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0002
      ATPase  18 egrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa 60 
                 ++  vlitG +G+GK++  + F+ + +++  ++  ++t+e p 
  EGE27561.1 129 QAGLVLITGATGSGKSTTLASFIDH-INQ-HQKKHIITIEDPI 169
                 55689*****************854.455.5667778888776 PP

>> NTPase_P4  ATPase P4 of dsRNA bacteriophage phi-12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00053      0.23     109     129 ..     128     148 ..      93     173 .. 0.84
   2 ?   -0.3   0.0       1.1   4.8e+02     176     210 ..     263     296 ..     236     343 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00053
                 EESEEEEEEESTTSSHHHHHH CS
   NTPase_P4 109 ilsGlvvvvGktgsGkskaLn 129
                   +Glv+++G+tgsGks +L 
  EGE27561.1 128 LQAGLVLITGATGSGKSTTLA 148
                 568**************7775 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.1
                 EEE-GHHHHCCS-SSBBCCCCBHHHHHHHHHHHHH CS
   NTPase_P4 176 viDslrnlvfaikGaassGGisaalydlLtdisnl 210
                   Dsl+ +v +    a  GG  +a++++Lt   ++
  EGE27561.1 263 LADSLKAVVAQRLLPAQGGG-RVAAFEILTHTPAV 296
                 56999999987776666555.56789999876554 PP

>> DUF3313  Protein of unknown function (DUF3313)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00017     0.073      43     113 ..     168     238 ..     138     288 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00017
     DUF3313  43 pvvvypkadptkglspadlqelanyfdraLceeLskryelvdspgpgtL.rvrlaitgvkptnpvlaaasvv 113
                 p+++ + +++   +++++  + ++ f++aL+ +L+++ ++   ++ ++L ++rla+t++++   vla++ +v
  EGE27561.1 168 PIEY-EHSSKLSLINQRQVGKDTRSFQNALRSALREDPDVILVGELRDLeTIRLALTAAETGHLVLATLHTV 238
                 4444.44444445777777778999************************88*****************9998 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   0.00021      0.09       1      85 [.     133     231 ..     133     273 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00021
                 EEEESSTTSSHHHHHHHHHHHHTHE.............EEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgve.............fleisgsell.skyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeer 84 
                 vl++G  G GK+++  + + +++++             +   s  +l+ +  vg+  +++++ +++a ++  p ++++ E+  l + r   ++ e +  
  EGE27561.1 133 VLITGATGSGKSTTLASFIDHINQHqkkhiitiedpieYEHSSKLSLInQRQVGKDTRSFQNALRSALRED-PDVILVGELRDLETIRlALTAAETGHL 230
                 799******************96333444444444333555555555544599***********9998887.*********999888864444444444 PP

                 H CS
         AAA  85 v 85 
                 v
  EGE27561.1 231 V 231
                 4 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00028      0.12       3      35 ..     133     167 ..     132     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00028
                 EEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS CS
        cobW   3 tvltGflGsGKTtLlnhll..enraglklavivNe 35 
                 +++tG  GsGK+t l + +   n++++k  + + +
  EGE27561.1 133 VLITGATGSGKSTTLASFIdhINQHQKKHIITIED 167
                 689****************9733444444333344 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00023       0.1      48      87 ..     125     165 ..      86     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
      DUF815  48 leglpannvLLwGarGtGKSslvkallneyaeeg.Lrliev 87 
                 +++l+a  vL++Ga G+GKS+++ + + ++++++  ++i +
  EGE27561.1 125 IAKLQAGLVLITGATGSGKSTTLASFIDHINQHQkKHIITI 165
                 56788999****************99999987763455555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00039      0.17       1      33 [.     133     161 ..     133     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00039
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkds 33 
                   ++++G++g GKSt+  ++++++ ++     k++
    EGE27561.1 133 VLITGATGSGKSTTLASFIDHINQHQ----KKH 161
                   6799*************999988665....333 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.11       3      26 ..     132     166 ..     130     210 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
     DUF2075   3 vvlVtGvaGtGKtvvllnllael...........e 26 
                 +vl+tG++G+GK+  l +++  +           e
  EGE27561.1 132 LVLITGATGSGKSTTLASFIDHInqhqkkhiitiE 166
                 69***************999999333333332221 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00049      0.21       2      32 ..     135     164 ..     134     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00049
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvt 32 
                    +t++ G GKS++l+ ++ ++ +++k++i+ t
     EGE27561.1 135 ITGATGSGKSTTLASFIDHINQHQKKHII-T 164
                    89******************999986654.4 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00037      0.16       4      46 ..     135     176 ..     132     199 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00037
         PRK   4 vagsSGaGkttvarklekifgrekvkaaeiegdsflrldraek 46 
                 ++g+ G+Gk+t+ + + + ++++++k   i+    ++++   k
  EGE27561.1 135 ITGATGSGKSTTLASFIDHINQHQKK-HIITIEDPIEYEHSSK 176
                 9********************98888.5555555555555444 PP

>> RecC_C  RecC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.4   1.5e+03      88     122 ..     185     231 ..     180     261 .. 0.62
   2 ?   10.4   0.1   0.00094      0.41      55     136 ..     257     337 ..     245     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.4
      RecC_C  88 lleqvealaealrallgeep..........leslevdldlggtg..L 122
                 + ++ + + +alr +l+e p          le++++ l++++tg  +
  EGE27561.1 185 VGKDTRSFQNALRSALREDPdvilvgelrdLETIRLALTAAETGhlV 231
                 55566666777777777666666666665555555555555544432 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00094
      RecC_C  55 rlleallaeellarlrargeLPpgafGelaleelleqvealaealrallgeepleslevdldlggtgLtgtldglrergllr 136
                 ++++++la+  l++  a+ +LP+ + G++a+ e+l+   a a  +r+   ++ ++ ++ +l+ g + Lt +l++l e+g ++
  EGE27561.1 257 HMIRTMLAD-SLKAVVAQRLLPAQGGGRVAAFEILTHTPAVAHLIRENKISQLPSVIQTSLTQGMIDLTQSLSRLAETGKIT 337
                 677888887.99***********************************9999989999999*****99*******99877665 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00052      0.23       1      29 [.     135     162 ..     135     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00052
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvav 29 
                 ++G  GsGK+t   ++++++++ + + ++
  EGE27561.1 135 ITGATGSGKSTTLASFIDHINQHQ-KKHI 162
                 68******************9884.4444 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00044      0.19      15      48 ..     119     152 ..     108     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
      AAA_27  15 tdrsldfsaeeadlhliyGpNEAGKstalrAisd 48 
                  d+ l++ + +a+l li G+  +GKst+l+++ d
  EGE27561.1 119 YDSMLKIAKLQAGLVLITGATGSGKSTTLASFID 152
                 6899999999*******************99866 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0063       2.8       2      35 ..     133     167 ..     132     185 .. 0.74
   2 ?    2.1   0.0       0.3   1.3e+02      82     120 ..     181     219 ..     177     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0063
                 EEEEESTTSSHHHHHHHHHH..SSCSSSCTTTSSEE CS
         Ras   2 lvlvGdsavGKtslllrfvk..dkFkeeyesTigvd 35 
                 +++ G ++ GK++ l +f++  ++ +++++ Ti +d
  EGE27561.1 133 VLITGATGSGKSTTLASFIDhiNQHQKKHIITI-ED 167
                 5678***************93346666666676.44 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.3
                 TBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG- CS
         Ras  82 tsresfenvkkwveeikrvaeenvpivLvGnKvDleekr 120
                 ++r+  ++ +++ + +++  +e+  ++LvG   Dle+ r
  EGE27561.1 181 NQRQVGKDTRSFQNALRSALREDPDVILVGELRDLETIR 219
                 55666677788889999999999************9844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              41  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 2723.18
//
Query:       EGE27562.1  [L=236]
Description: putative alanine racemase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-28   98.4   0.0    6.1e-28   98.0   0.0    1.2  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   3.4e-32   6.1e-28      19     218 ..      32     233 ..       7     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 3.4e-32
                     T......TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESC...STGGGHHHHHHT.TEEEEESSHHHHHHH CS
  Ala_racemase_N  19 p......gaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvleg...fspeelaalaey.dltvtvdsleqleal 103
                     +      +akl+av+K+  +++ +++ +   + +g + fg+++l+Eal   ++  + pi ++++   +++++ +++a++ d+++t+ ++  +++l
      EGE27562.1  32 QmnpthrPAKLIAVSKT--KPVAMIQTLF--H-QGQQDFGENYLQEALGKISQLSQLPI-IWHYigsIQRNKTRDIAKHfDWVHTLEREIIAQRL 120
                     0333445899*******..8888866665..5.56*************77777777799.66666779*************************** PP

                     HHHHHHTTS-EEEEEEBESSSS..SSSBSCHHHHHHHHHHHHTTTEEEEEEE-S-SSTTSTSHHHHHHHHHHHHHHHHHHHTTGGGSEEEEESHH CS
  Ala_racemase_N 104 aaaareagkplrvhlkidtgmg..RlGftpeeleellealaalpglrleglmtHfasadepdeeteaqlarfeealeelekaglrppvvslanSa 196
                     +++++   +pl+v+++i+++ +  ++G++p el++l+e++ + ++l+l+g+m +++     d ++++    f++++ +++   ++ +++s+++S+
      EGE27562.1 121 NEQRA-GMQPLNVLIQINIDDEssKSGCKPTELPTLIEQIINYKNLNLRGVMVIPSQQTV-D-AFARTKVLFDAMARRFD--LPNWDTISMGMSG 210
                     ***96.9************99999*********************************886.6.7889999*********7..899********** PP

                     HHHHSGGG.TTEEEESGGGGT-S CS
  Ala_racemase_N 197 aillaaah.fdmvRpGialyGls 218
                     ++++a  h ++mvR+G+a++G +
      EGE27562.1 211 DMTQAVVHgSTMVRVGTAIFGER 233
                     *****7678************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1800.31
//
Query:       EGE27563.1  [L=563]
Description: NAD+ synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-70  236.3   0.0    3.7e-70  235.8   0.0    1.2  1  NAD_synthase  NAD synthase
    4.4e-28   98.3   0.0    6.6e-28   97.8   0.0    1.2  1  CN_hydrolase  Carbon-nitrogen hydrolase
    4.7e-05   23.0   0.0    7.5e-05   22.3   0.0    1.3  1  QueC          Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.8   0.0   6.1e-74   3.7e-70       2     241 ..     286     535 ..     285     536 .. 0.96

  Alignments for each domain:
  == domain 1  score: 235.8 bits;  conditional E-value: 6.1e-74
                   HHHHHHHHHHHHHHCTTSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSSTTHHHHHHHHHHHHHHTSEEEE---HHHHHHHHH....HHHH CS
  NAD_synthase   2 ieelvdflkeyvkkagakgvvlGlSGGvDSslvaalavkalgkenvlalllPssvsseedvedalalaenlgievktidikpivrafeq....elke 94 
                   +++lv  l++yv+++g+kgv++GlSGG+DS+l+ ++av+alg ++v a+++P +++ + ++eda a a +l++ +++++i+++v+ +++     l +
    EGE27563.1 286 YQALVVGLRDYVNRSGFKGVIVGLSGGIDSALTLCIAVDALGCDRVYAVMMPYEYTAQISLEDAEAQAARLNVSYTVCPIHDAVAGLRSalapLLAN 382
                   6889999*****************************************************************************9999955554555 PP

                   HH-HHHHHHHHHHHHHHHHHHHHHHHTEEEB---BHHHHTTT-S-TTTTT--SBETTTTS-HHHHHHHHHHTT.......--HHHHCS--B--SSTT CS
  NAD_synthase  95 akedlakgNlkaRiRmailyaianklnllvlgTgnksElvvGyfTkyGDgaadlapiaellKtevkeLakeln.......vPervlkkpPsAdLkpg 184
                   ++ d++++Nl+aR+R +il+a +nk++++v++TgnksE +vGy T+yGD+ +++  +++++Kt+v++La++ n       +Perv+++pPsA+L+p+
    EGE27563.1 383 SEPDVTEENLQARARGTILMALSNKFGHMVISTGNKSENAVGYSTLYGDMVGGFDVLKDVYKTDVYRLANYRNrlednpvIPERVITRPPSAELRPN 479
                   558********************************************************************************************** PP

                   -BHHHHHSS-HHHHHHHHT.HSSSS...HHHHHTTT--HHHHHHHHHHHHHTGGGGSS CS
  NAD_synthase 185 qtDeeeLgikYdelDeiLk.lvekkkspeeiikekelpaevvekieklvkksehKrkl 241
                   q D+++Lg  Y++lD iLk +++ +   + i++ ++++ ++veki  +v + e+Kr++
    EGE27563.1 480 QKDQDSLG-DYETLDSILKmYIDDDLGYKAIVA-AGFEPKTVEKILGMVDRAEYKRRQ 535
                   ********.**********99999999999999.**********************97 PP

>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   1.1e-31   6.6e-28       3     253 ..      29     264 ..      27     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1.1e-31
                   EEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEEEEEEE CS
  CN_hydrolase   3 AvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavvigliereltngklqayntav 99 
                   A++Q + +  d+++n++k+ +l   A+ +gad++++PEl+++gy  +++ l +  ++   + +++a+la+  gi+v++g+++ + ++g+   +n+a 
    EGE27563.1  29 AIIQTNFWVGDIAGNVKKMHALTLDAKARGADIVIFPELALVGY-PPEDLL-LRPTLGERVREAMAKLAEIEGIVVILGYPHID-HHGT---FNSAA 119
                   99******************************************.333333.333445589999******************94.5555...5**** PP

                   EEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SSS-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH.GCCCTCHHHHHHHHHHHH CS
  CN_hydrolase 100 lldldgklvgkyrKlhLfpgeprpptaverelfepgdgipvfdtpvgkiGaaiCyeigfpellralalkgaeilvnlserapvpksmgppqwellgr 196
                   +l+++ +  g y+K  L    p+ + + e  +f++g     fd +++ iG++iC++i+++e + al++ ga++++  ++ +p++  +  +  +ll+r
    EGE27563.1 120 ILQDGSQ-KGFYHKQCL----PNYGIFDEQRYFQKGLNQVLFDYKGVTIGLLICEDIWHDEPIQALKQAGADLVIV-INASPFEIGKQTARKSLLTR 210
                   **88888.7*******8....78999*********8877889*********************************9.66788888888888777777 PP

                   HHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEH CS
  CN_hydrolase 197 aralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidl 253
                   + +   + ++i++n vg+  q+++++ g+S i+  dGr++ +  ++  ++l+a  d 
    EGE27563.1 211 HSS-THHLPIIYVNTVGA--QDDIVFDGGSLITQSDGRVAHEGVRFLNQLLMARFDI 264
                   766.68************..********************99888888888887775 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.3e-08   7.5e-05       2      72 ..     305     376 ..     304     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.3e-08
                 EEEE--SSHHHHHHHHHHHHH-..SEEEEEEEESS-TTSHHHHHHHHHHHHT--.-EEEEE-GGGGGGSCGGG CS
        QueC   2 avvllSGGlDSttvlalakkeg..kevealtfdYgqrhkkeleaakkiakelgveehkildldllkelggsaL 72 
                 ++v lSGG+DS+  l++a ++   ++v+a+ + Y+  +++ le a++ a++l+v + ++  ++   +  +saL
  EGE27563.1 305 VIVGLSGGIDSALTLCIAVDALgcDRVYAVMMPYEYTAQISLEDAEAQAARLNV-SYTVCPIHDAVAGLRSAL 376
                 5899*******99888888764449*****************************.888877764444444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3972.07
//
Query:       EGE27564.1  [L=91]
Description: hypothetical protein EA1_01692 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.093   13.1   0.1       0.11   12.8   0.1    1.1  1  DUF3268   zinc-finger-containing domain
       0.16   11.0   0.1       0.36    9.8   0.0    1.5  2  DUF2333   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF3268  zinc-finger-containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.2e-05      0.11       3      50 ..      41      88 ..      39      90 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
     DUF3268  3 trCpyCGekvilvsaseiYkerskgkllylC..pkCdayvgvhkgtkipl 50
                 +C+yCG++ ++ +   +  e++ +   + C   +  +y  +h++ + p+
  EGE27564.1 41 RHCHYCGHALATYRGILLN-EKQPN-ERFFCnaDHLKSYADTHPKENLPM 88
                58*****998877765555.44444.45558778999*******999885 PP

>> DUF2333  Uncharacterized protein conserved in bacteria (DUF2333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0     0.088   7.9e+02      12      38 ..       7      33 ..       2      45 .. 0.72
   2 ?    9.8   0.0     4e-05      0.36     154     185 ..      48      79 ..      38      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.088
     DUF2333 12 lllvlllvvvlvlgiyWssePdafdvr 38
                 ++++ +v+ l+l +++ + P+af  +
  EGE27564.1  7 NIIIISVVMWLFLKFMYPKPPKAFFPK 33
                456677788888899998888887655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 4e-05
     DUF2333 154 kalerYlkrlsdekekdaqFyaradnLneyle 185
                 +al +Y+  l +ek+ + +F+  ad L++y +
  EGE27564.1  48 HALATYRGILLNEKQPNERFFCNADHLKSYAD 79 
                 6899*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 678.42
//
Query:       EGE27565.1  [L=115]
Description: cell division protein ZapA-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-14   52.6   0.2    5.5e-14   52.4   0.2    1.1  1  ZapA           Cell division protein ZapA
  ------ inclusion threshold ------
      0.014   15.7   0.7      0.019   15.2   0.7    1.1  1  ATG16          Autophagy protein 16 (ATG16)
      0.081   12.7   2.3          3    7.7   0.4    2.3  2  DivIC          Septum formation initiator
      0.093   12.8   1.3       0.12   12.5   1.3    1.1  1  TssO           Type VI secretion system, TssO
        0.1   13.1   0.9       0.18   12.2   0.8    1.4  1  DUF4140        N-terminal domain of unknown function (DUF4140
       0.19   11.5   1.6        9.5    6.1   0.3    2.3  2  TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding d
        0.2   12.2   2.5        9.7    6.7   1.3    2.0  2  APG6_N         Apg6 coiled-coil region
       0.41   11.1   2.4        2.1    8.8   0.4    2.1  2  FlaC_arch      Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> ZapA  Cell division protein ZapA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.2   2.5e-17   5.5e-14       1      87 [.      22     110 ..      22     111 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.5e-17
        ZapA   1 vtvtIlgreytlaceegeeeylreaaklvdekikeireaggn..lseerllvmaaLnladellklkkraeeleaeleelaerleelaer 87 
                 ++++I+g   +++c+ +e + l++ a+++++ki+++r+  ++   ++e+ lv+++L l de+++lk + ++  +e +++a+ +++++++
  EGE27565.1  22 IDISIAGTPHRIVCPVDEIKNLEHGAEYINHKIRDLRREIKHktPTNEEFLVLVCLELYDEVQALKTQITKTDDEKAKVAAMIDKINQQ 110
                 89***************************************86667779********************99999999999999999986 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.7   8.6e-06     0.019     124     177 ..      39     100 ..      37     103 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.6e-06
       ATG16 124 rlaeleaeraaletklkdreeelrekeklvq........dlqDElsaLqlqlnqaEeklrkl 177
                 ++++le+  + ++ k++d++ e++ k+ +++        +l DE++aL+ q ++ ++++ k+
  EGE27565.1  39 EIKNLEHGAEYINHKIRDLRREIKHKTPTNEeflvlvclELYDEVQALKTQITKTDDEKAKV 100
                 68999999999*********************************************999987 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1      0.01        23      45      64 ..      38      56 ..      37      70 .. 0.88
   2 ?    7.7   0.4    0.0013         3      22      53 ..      79     109 ..      73     115 .] 0.72

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.01
                HHHCC-XXXXXXXXXXXXXX CS
       DivIC 45 aevkdLksdedyieerARse 64
                +e+k+L+++ +yi  + R +
  EGE27565.1 38 DEIKNLEHGAEYINHKIR-D 56
                599999999999999988.4 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC  22 lkqeiaalqaelaklkaeneeLeaevkdLksd 53 
                 l  e++al+ ++ k  +e+++ +a +++  ++
  EGE27565.1  79 LYDEVQALKTQITKTDDEKAKVAAMIDKI-NQ 109
                 55678888888888888888888888877.33 PP

>> TssO  Type VI secretion system, TssO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.3   5.2e-05      0.12      85     144 ..      48     107 ..      38     111 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.2e-05
        TssO  85 neIkkdlndikntygknssdeRykmyaqiakfykmlledKkelksvseniklfkkqLeec 144
                 ++I+ +++d++  ++ +  ++   +  + +++y++ + +K ++ ++ +++ ++   ++++
  EGE27565.1  48 EYINHKIRDLRREIKHKTPTNEEFLVLVCLELYDEVQALKTQITKTDDEKAKVAAMIDKI 107
                 68**************99999788888899****************99988887776666 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8   8.2e-05      0.18      48      95 ..      53     111 ..      48     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.2e-05
     DUF4140  48 tildvqvervpnreaeee...........elkalraeleeledelaaledelaaaearl 95 
                 +i d++ e +  +++ ee           e++al+ ++++  de+a++ + ++ ++++ 
  EGE27565.1  53 KIRDLRREIKHKTPTNEEflvlvclelydEVQALKTQITKTDDEKAKVAAMIDKINQQA 111
                 577777777777777777999999999988********************999999986 PP

>> TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.012        28      49      62 ..      48      61 ..      39      62 .. 0.87
   2 ?    6.1   0.3    0.0042       9.5      41      61 ..      93     113 ..      78     115 .] 0.74

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
  TRAF_BIRC3_bd 49 eaLekKvrqLerti 62
                   e +++K+r+L+r i
     EGE27565.1 48 EYINHKIRDLRREI 61
                   6789********87 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0042
  TRAF_BIRC3_bd  41 rrldqekieaLekKvrqLert 61 
                       ++ k++a+  K++q+ r+
     EGE27565.1  93 TDDEKAKVAAMIDKINQQARS 113
                    3467899************98 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.017        39      68     101 ..      38      71 ..      36      73 .. 0.90
   2 ?    6.7   1.3    0.0043       9.7      58      92 ..      78     112 ..      68     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.017
      APG6_N  68 eeLkelekereeleaelaaleeelealeeeeerf 101
                  e+k+le+  e ++ ++++l++e +++   +e+f
  EGE27565.1  38 DEIKNLEHGAEYINHKIRDLRREIKHKTPTNEEF 71 
                 699*********************9998888877 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0043
      APG6_N  58 klekeeeelleeLkelekereeleaelaaleeele 92 
                 +l +e ++l +++ ++++e+++++a + ++ ++++
  EGE27565.1  78 ELYDEVQALKTQITKTDDEKAKVAAMIDKINQQAR 112
                 56788999999999999999999999999998875 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.12   2.7e+02      16      37 ..      40      61 ..      37      70 .. 0.55
   2 ?    8.8   0.4   0.00094       2.1       4      41 ..      78     115 .]      77     115 .] 0.91

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
   FlaC_arch 16 letvkkeneelsksveelkenV 37
                +++++   e ++ ++ +l +++
  EGE27565.1 40 IKNLEHGAEYINHKIRDLRREI 61
                4444444444444444444444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00094
   FlaC_arch   4 elEnklsklsteletvkkeneelsksveelkenVkdll 41 
                 el  +++ l+t+++   +e  ++   +++++++ + +l
  EGE27565.1  78 ELYDEVQALKTQITKTDDEKAKVAAMIDKINQQARSML 115
                 56789***************************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1255  (0.0699983); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 937.64
//
Query:       EGE27566.1  [L=119]
Description: hypothetical protein EA1_01702 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00015   21.7  12.0       0.04   13.9   3.7    2.3  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
      0.001   19.4  10.8     0.0026   18.0   3.1    2.3  2  DUF5082          Domain of unknown function (DUF5082)
     0.0013   17.7  10.9     0.0014   17.6  10.9    1.1  1  Spc7             Spc7 kinetochore protein
     0.0013   19.1   8.4     0.0013   19.1   8.4    2.4  2  ZapB             Cell division protein ZapB
      0.003   17.3   9.6     0.0044   16.8   9.6    1.3  1  DUF4201          Domain of unknown function (DUF4201)
      0.004   17.2   8.4     0.0047   17.0   8.4    1.1  1  Rootletin        Ciliary rootlet component, centrosome cohesi
     0.0051   17.0   8.7     0.0054   17.0   4.0    2.3  2  ABC_tran_CTD     ABC transporter C-terminal domain
  ------ inclusion threshold ------
      0.019   13.7   8.1       0.02   13.5   8.1    1.1  1  AAA_13           AAA domain
       0.02   15.0   1.2       0.02   15.0   1.2    2.6  2  bZIP_1           bZIP transcription factor
      0.033   14.8   9.5        0.3   11.8   2.1    2.1  2  YabA             Initiation control protein YabA
       0.04   14.3   3.9       0.04   14.3   3.9    2.3  2  Snapin_Pallidin  Snapin/Pallidin
      0.044   13.3  21.0      0.058   12.9  21.0    1.1  1  MscS_porin       Mechanosensitive ion channel porin domain
      0.046   13.9   1.6      0.046   13.9   1.6    3.1  3  XhlA             Haemolysin XhlA
      0.072   11.6   6.7      0.078   11.5   6.7    1.0  1  FUSC             Fusaric acid resistance protein family
      0.083   12.3  13.4       0.11   12.0  13.4    1.2  1  HBM              Helical bimodular sensor domain
      0.098   12.9  14.4       0.19   11.9  14.4    1.5  1  ATG16            Autophagy protein 16 (ATG16)
        0.1   12.7   4.3       0.17   12.0   4.3    1.4  1  Sigma70_r1_1     Sigma-70 factor, region 1.1
       0.11   10.4   5.9       0.12   10.3   5.9    1.0  1  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.13   12.6   4.6         20    5.6   0.1    3.6  3  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
       0.16   11.9   3.9       0.16   12.0   2.9    1.5  2  DUF4446          Protein of unknown function (DUF4446)
       0.17   11.8   4.9        0.2   11.6   4.3    1.4  1  EMP24_GP25L      emp24/gp25L/p24 family/GOLD
       0.23   11.7   7.7       0.29   11.3   3.9    2.0  2  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
       0.23   11.4   4.5        2.6    8.0   4.5    2.4  1  SLATT_1          SMODS and SLOG-associating 2TM effector doma
       0.24   12.1  18.0        8.7    7.0   4.3    2.7  2  SlyX             SlyX
       0.29   11.6   9.1       0.45   11.0   9.1    1.4  1  DUF16            Protein of unknown function DUF16
        0.3   10.9  12.9       0.12   12.2   9.9    1.7  2  Bacillus_HBL     Bacillus haemolytic enterotoxin (HBL)
       0.31   11.4   8.6        1.4    9.2   5.3    2.3  2  Tup_N            Tup N-terminal
       0.37   10.9  15.5      0.099   12.7   9.2    2.0  2  ADIP             Afadin- and alpha -actinin-Binding
       0.39   10.6   8.8          1    9.3   8.8    1.7  1  Phage_Mu_Gam     Bacteriophage Mu Gam like protein
       0.42   10.8   9.1       0.76   10.0   9.1    1.5  1  K-box            K-box region
       0.43   10.4  21.2        1.6    8.6   5.5    3.1  3  DivIC            Septum formation initiator
       0.46   10.9   6.9       0.75   10.2   6.7    1.6  1  TSNAXIP1_N       Translin-associated factor X-interacting N-t
       0.46   10.9   3.8        4.6    7.7   0.5    2.8  3  FlaC_arch        Flagella accessory protein C (FlaC)
        0.5   10.6  12.7        2.2    8.6   1.9    2.2  2  Spc24            Spc24 subunit of Ndc80
       0.55   10.4   8.1        1.4    9.1   2.9    3.2  3  JIP_LZII         JNK-interacting protein  leucine zipper II
       0.57   10.5  10.8       0.86    9.9  10.1    1.8  1  BLOC1_2          Biogenesis of lysosome-related organelles co
        0.6   10.2  16.1       0.92    9.6   4.4    2.2  2  TolA_bind_tri    TolA binding protein trimerisation
       0.63   10.1  12.9       0.33   11.1   4.9    2.1  2  Mod_r            Modifier of rudimentary (Mod(r)) protein
       0.81    8.2   7.0       0.95    8.0   7.0    1.1  1  FapA             Flagellar Assembly Protein A
       0.83    8.9   8.8       0.84    8.9   7.8    1.6  2  CorA             CorA-like Mg2+ transporter protein
       0.85    7.5   7.3       0.94    7.4   7.3    1.0  1  Prominin         Prominin
       0.92   10.0  13.2        5.5    7.5  13.2    1.9  1  APG6_N           Apg6 coiled-coil region
        1.1    8.8  10.6         12    5.4  10.6    2.0  1  DUF4795          Domain of unknown function (DUF4795)
        1.1    9.1  10.3       0.35   10.7   5.3    2.1  2  Sec34            Sec34-like family
        1.2    9.0   7.1        2.3    8.0   7.0    1.5  1  DUF724           Protein of unknown function (DUF724)
        1.2    9.7   7.9          3    8.4   6.6    2.0  2  UPF0449          Uncharacterised protein family UPF0449
        1.3    9.5  14.4        3.2    8.2   3.8    2.1  2  CENP-H           Centromere protein H (CENP-H)
        1.7    8.7   7.2        3.1    7.9   7.2    1.5  1  DUF1664          Protein of unknown function (DUF1664)
        1.7    8.3  11.7          1    9.0   4.8    2.2  2  GrpE             GrpE
        1.7    7.6   8.9        2.1    7.4   8.9    1.2  1  Atg14            Vacuolar sorting 38 and autophagy-related su
        1.8    8.4   8.4        2.2    8.1   8.4    1.1  1  PCRF             PCRF domain
        1.8    8.8  10.5       0.14   12.3   4.9    2.2  2  T3SS_needle_E    Type III secretion system, cytoplasmic E com
          2    8.3  13.7        2.5    8.0  13.7    1.0  1  JAKMIP_CC3       JAKMIP CC3 domain
          2    7.9  17.5        1.5    8.3   3.8    2.0  2  PspA_IM30        PspA/IM30 family
        2.3    8.5   9.5        3.6    7.9   6.9    2.2  2  DUF948           Bacterial protein of unknown function (DUF94
        4.1    8.2   9.2        3.4    8.4   2.9    2.0  2  DUF2203          Uncharacterized conserved protein (DUF2203)
        4.2    6.6   8.4        4.8    6.4   8.4    1.1  1  FAM76            FAM76 protein
        8.9    6.4  10.1         49    4.0   9.0    2.4  1  DUF2205          Short coiled-coil protein


Domain annotation for each model (and alignments):
>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   3.7   0.00013      0.04      27      73 ..       4      52 ..       2      53 .. 0.87
   2 !   13.4   5.7   0.00018     0.057      13      69 ..      41      97 ..      39     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00013
  TMF_DNA_bd 27 kelklnntikkLrkknkelekeikelkkkle..klekeleeleerlkea 73
                + ++l++ti  ++k+ + + +e+++lk++++  ++ k++e+l+++l +a
  EGE27566.1  4 QLQALEQTIIAMKKQYAVTATELANLKQRIAndDSAKQIETLQAKLNQA 52
                66789**********************8876227889********9886 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00018
  TMF_DNA_bd 13 qIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleer 69
                qI+ L++ + +     +++nn ++ L+++ + le++++el + ++ l  + + l+++
  EGE27566.1 41 QIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDK 97
                9***************************************88777776666666665 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   2.9    0.0012      0.37      74     122 ..      14      67 ..       5      68 .. 0.86
   2 !   18.0   3.1   8.4e-06    0.0026       6      48 ..      57      99 ..      55     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0012
     DUF5082  74 nlessyqtyvdkldelidaieeE.....IerLenqiseaqgvldtlqsqlnslk 122
                  ++++y    ++l +l+++i ++     Ie+L+ ++++a  ++d+ ++ +++l+
  EGE27566.1  14 AMKKQYAVTATELANLKQRIANDdsakqIETLQAKLNQALVDIDHHNNRVDDLQ 67 
                 6889999999999999999987555555************************97 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 8.4e-06
     DUF5082  6 sklqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkk 48
                   ++++++l+++ +ale+++ +L++a ++l ++++ lk+k+ 
  EGE27566.1 57 DHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKNA 99
                567899*********************************9975 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6  10.9   4.5e-06    0.0014     161     258 ..       4      96 ..       1     114 [. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.5e-06
        Spc7 161 qeeeldellpeleeekaeleeeleklqeaaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle 258
                 q + l++   ++++++a    el++l+++ ++    d  +++e+l+ +l+++ ++i+++++++++lq+  ++le++++el +     ++ i + +++++
  EGE27566.1   4 QLQALEQTIIAMKKQYAVTATELANLKQRIAN---DDsAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQ---ANRALITQNQDLKD 96 
                 66778888888999999999999999996654...55489999************************999999999988844...44444444444444 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.1       1.2   3.6e+02       6      32 ..       5      31 ..       1      41 [. 0.41
   2 !   19.1   8.4   4.4e-06    0.0013       4      59 ..      40      95 ..      37     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 1.2
        ZapB  6 LeqLEskiqkaidtitlLqmeieeLke 32
                L+ LE+ i ++  +++    e++ Lk+
  EGE27566.1  5 LQALEQTIIAMKKQYAVTATELANLKQ 31
                333333333333333333333333333 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 4.4e-06
        ZapB  4 elLeqLEskiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawq 59
                 + e L++k ++a+  i++  +++++L++ +++l+++ +el + n +l ++ + ++
  EGE27566.1 40 KQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLK 95
                5889**************************************88888876666555 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   9.6   1.4e-05    0.0044      45     137 ..       6     100 ..       2     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-05
     DUF4201  45 eqlqienqalnkkIeernkeLkrlkkkttkt..vhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggl 137
                 + l+  ++a++k+ +    eL +lk++++++   +++++l+ kl+       +++++ +++++++++l++++ ++ + +  l +qn++lk++++l
  EGE27566.1   6 QALEQTIIAMKKQYAVTATELANLKQRIANDdsAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKNAL 100
                 5677777888888888889********9986448999******************************************************9987 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   8.4   1.5e-05    0.0047      34     117 ..       7      97 ..       2     113 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.5e-05
   Rootletin  34 eleqrlle.......ktselektkltlllssareleeeesadleealakLeeErqrseklaqvnslLreqleearqaneaLtedlqkltkd 117
                  leq + +       + +el + k+++ +    +  e+ +a+l++al   +   +r ++l+q+ + L +q++e  qan+aL + +q l+++
  EGE27566.1   7 ALEQTIIAmkkqyavTATELANLKQRIANDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDK 97 
                 44544444221111122222222222222333334444555669*****************************************999865 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.9      0.38   1.2e+02      17      49 ..       5      32 ..       1      40 [. 0.50
   2 !   17.0   4.0   1.7e-05    0.0054       9      62 ..      25      82 ..      23      83 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.38
  ABC_tran_CTD 17 IeaLEeeiaeleaeladpelysdpeklaelsae 49
                  ++aLE+ i ++ ++ a  +     ++la l ++
    EGE27566.1  5 LQALEQTIIAMKKQYAVTA-----TELANLKQR 32
                  4444444444444444333.....444444444 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.7e-05
  ABC_tran_CTD  9 eleeleaeIea..LEeeiaeleaeladpelysdp..eklaelsaeleeleaeLeelye 62
                  el++l ++I+     ++i++l+a+l+++ +  d+  +++ +l++ +++le++ +ely+
    EGE27566.1 25 ELANLKQRIANddSAKQIETLQAKLNQALVDIDHhnNRVDDLQQTQNALEQQVDELYQ 82
                  66777777764113457777777777776664444799******************96 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   8.1   6.6e-05      0.02     337     426 ..      15     103 ..       1     114 [. 0.68

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.6e-05
      AAA_13 337 LkglqraleaKrkepfksvelesvkakiesikklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykkkykklekaie 426
                 +k+ + +      ++ +++  ++++++ie ++ +++++   i  hN++v++l++ ++++++++   + +  ++ +++ ++ ++k + ai+
  EGE27566.1  15 MKKQYAVTATELANLKQRIANDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQA-NRALITQNQDLKDKNALAIS 103
                 3333333334445556677778888888999999999999***********************985544.45666666655555555555 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.6      0.94   2.9e+02      31      57 ..       8      34 ..       2      54 .. 0.58
   2 ?   15.0   1.2   6.3e-05      0.02      25      57 ..      67      99 ..      66     102 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.94
                HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 31 LerrvkaLekeNksLkseleelkkeve 57
                Le+   a++k+ +  + el +lk  ++
  EGE27566.1  8 LEQTIIAMKKQYAVTATELANLKQRIA 34
                555555555555555555555555444 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 6.3e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 25 qaeieeLerrvkaLekeNksLkseleelkkeve 57
                q+ +++Le++v++L + N +L+ +++ lk++++
  EGE27566.1 67 QQTQNALEQQVDELYQANRALITQNQDLKDKNA 99
                68899************************9875 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.2     0.015       4.7      21      61 ..       2      42 ..       1      59 [. 0.63
   2 ?   11.8   2.1   0.00096       0.3      10      52 ..      56      98 ..      49     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.015
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXX CS
        YabA 21 leeleelkeelaelleenaeLeleneklrerleeeekkeke 61
                l++l++l++++ ++ ++ a   +e  +l++r+++++++++ 
  EGE27566.1  2 LAQLQALEQTIIAMKKQYAVTATELANLKQRIANDDSAKQI 42
                67778888888888888888888888888888433333332 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00096
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA 10 leeleeqleelleeleelkeelaelleenaeLeleneklrerl 52
                +++ ++++++l+++ ++l++++ el++ n++L ++n+ l+++ 
  EGE27566.1 56 IDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKN 98
                5666778888888888888888888888888888888888764 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   4.7      0.45   1.4e+02      20      67 ..       3      51 ..       1      53 [. 0.87
   2 ?   14.3   3.9   0.00013      0.04      14      44 ..      55      85 ..      52     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.45
  Snapin_Pallidin 20 eklkelrqsQeeLleqldrlnekLkeleeaqe.aevlpdlkeyakKLvn 67
                     ++l++l+q+  ++++q    +++L++l++    +++ +++++ ++KL++
       EGE27566.1  3 AQLQALEQTIIAMKKQYAVTATELANLKQRIAnDDSAKQIETLQAKLNQ 51
                     5888999999999999999999999999999999999999999999976 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 0.00013
  Snapin_Pallidin 14 kldeldeklkelrqsQeeLleqldrlnekLk 44
                     ++d +++++ +l+q+Q++L +q+d+l ++ +
       EGE27566.1 55 DIDHHNNRVDDLQQTQNALEQQVDELYQANR 85
                     58999********************987644 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  21.0   0.00019     0.058      80     176 ..       5     103 ..       3     108 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00019
  MscS_porin  80 leeLeqrllqtssqlqelqeqlaqlnsqlve..lqtrperaqqqltearqrlqeirnrLnstaaagealsqaqrtalqaelaaleaqieeleqellsnn 176
                 l++Leq +++ + q + + ++la+l++++++     ++e++q++l +a   +++ +nr ++++++++al+q    ++qa++a+++++ ++ ++ +l  +
  EGE27566.1   5 LQALEQTIIAMKKQYAVTATELANLKQRIANddSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKNALAIS 103
                 789**************************98335678999*************************************************9999888765 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2      0.28        85      12      42 ..       4      34 ..       1      37 [. 0.82
   2 ?   13.9   1.6   0.00015     0.046       3      37 ..      46      80 ..      40      83 .. 0.91
   3 ?    1.7   0.1      0.95   2.9e+02      21      46 ..      92     117 ..      87     119 .] 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.28
        XhlA 12 kldnleervdkleekaaeaeekiknleedlk 42
                +l  le+++   ++  a + +++ nl  +++
  EGE27566.1  4 QLQALEQTIIAMKKQYAVTATELANLKQRIA 34
                5667888888899999999999999998886 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00015
        XhlA  3 kerlerietkldnleervdkleekaaeaeekiknl 37
                + +l++   ++d +++rvd+l++ ++  e+++++l
  EGE27566.1 46 QAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDEL 80
                678999999*********************99876 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.95
        XhlA  21 dkleekaaeaeekiknleedlkkles 46 
                 ++l++k+a a ++++ + + l+k+  
  EGE27566.1  92 QDLKDKNALAISRAEVIRDWLSKIDR 117
                 589*************9999999975 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   6.7   0.00025     0.078     231     343 ..       1     111 [.       1     115 [. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00025
        FUSC 231 llallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslraleaaia 329
                 +la+l++l++   +++++ a ++ ela+l +++a+ ++a++ e+l+a+l++   +++ ++++ ++ ++t+ +l ++++el ++ ++l ++ ++l+   a
  EGE27566.1   1 MLAQLQALEQTIIAMKKQYAVTATELANLKQRIANDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKNA 99 
                 6899*******************99**********5555555555555555555555555555566666666666665555555555555555554433 PP

        FUSC 330 aarraerlarhrdh 343
                    +  r++  rd+
  EGE27566.1 100 --LAISRAEVIRDW 111
                 ..455555666666 PP

>> HBM  Helical bimodular sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  13.4   0.00034      0.11     165     251 ..      12      99 ..       3     101 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00034
                 HHHHHHHHHHHHHHHHHHHHH-G.G.GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
         HBM 165 eqaavtaldaalaeldqlrqala.sdpraalqqlesalskYRaaleqfkaavaaieqarkemteqgdeivkisdeLyqiqtekrdsea 251
                   a+ ++   +  el++l+q++a +d++++++ l+  l++    ++ +++ v+  +q ++++++q+de+++ + +L    ++++d++a
  EGE27566.1  12 IIAMKKQYAVTATELANLKQRIAnDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKNA 99 
                 55666777778899*******996778889***********************************************99999999887 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  14.4   0.00061      0.19      73     158 ..       9      96 ..       1     106 [. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00061
       ATG16  73 sakiqsleqklaqlreelaelyks..rgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqD 158
                 +++i +++++ a + +ela+l ++  + ++a+++ +l+++l +    +   ++r+++l+++ +ale++++++ ++ r + + +qdl+D
  EGE27566.1   9 EQTIIAMKKQYAVTATELANLKQRiaNDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKD 96 
                 45677788888888899999988644789**********************************************************9 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   4.3   0.00055      0.17       5      72 ..       6      76 ..       3      84 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00055
                  HHHHHHHHHHHHHSCEEHHHHHHHGC..CSS--HHHHHHHHHHHHCCT-EEE-SS-..........S-SSS CS
  Sigma70_r1_1  5 aavkeLikkgKkkGyLtyeEindaLp..ddeldseqiediiemLedmgIdvveeaededell.leeeaeda 72
                  +a+++ i   Kk+  +t  E+++  +   ++ ++ qie ++++L+++ +d+  +++  d+l+ ++++ e++
    EGE27566.1  6 QALEQTIIAMKKQYAVTATELANLKQriANDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQqTQNALEQQ 76
                  66777777788888899999998665445668999********************9999987444444433 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.9   0.00039      0.12      39     123 ..       5      94 ..       1     117 [. 0.47

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00039
  V_ATPase_I  39 lrfleeeieklekavikeeea.....eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleeeeeee 123
                 l+ le++i  ++k+ + + ++     ++  +++++k++++l+++l+++  ++ + n+  ++l++++n l+++   l +a++ l +++++ 
  EGE27566.1   5 LQALEQTIIAMKKQYAVTATElanlkQRIANDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDL 94 
                 444444433333333322222333334555556666666666666666666666666666666666666555544444444443332211 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.063        20       9      30 ..      15      36 ..       7      38 .. 0.88
   2 ?    4.6   0.1      0.13        41      17      29 ..      39      51 ..      36      53 .. 0.86
   3 ?    2.6   0.0      0.55   1.7e+02      43      65 ..      58      80 ..      55      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.063
  Val_tRNA-synt_C  9 LeKeLaklekeiervqkKLanp 30
                     ++K++a  ++e++ +++++an 
       EGE27566.1 15 MKKQYAVTATELANLKQRIAND 36
                     689*****************96 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.13
  Val_tRNA-synt_C 17 ekeiervqkKLan 29
                     +k+ie++q KL+ 
       EGE27566.1 39 AKQIETLQAKLNQ 51
                     79*********95 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.55
  Val_tRNA-synt_C 43 eekaklaeleeqaeklkerLskL 65
                        +++ +l++++++l+++ ++L
       EGE27566.1 58 HHNNRVDDLQQTQNALEQQVDEL 80
                     56789999**********99887 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.9   0.00051      0.16      16      80 ..      18      82 ..       5      87 .. 0.89
   2 ?    7.7   0.4      0.01       3.2      38      85 ..      61     108 ..      47     109 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00051
     DUF4446 16 llivllvklkklkkkykklmkgkdgksleellkekleeveelkeeseelekeieeleeklkkslq 80
                 + v+ ++l +lk+++ +  + k+ ++l+ +l++ l ++++ ++++++l++++++le+++++ +q
  EGE27566.1 18 QYAVTATELANLKQRIANDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQ 82
                56788899999999999999999*************************************99988 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.01
     DUF4446  38 kdgksleellkekleeveelkeeseelekeieeleeklkkslqkvglv 85 
                 ++ ++l+++ +   ++v+el +++++l ++ ++l++k + ++++ +++
  EGE27566.1  61 NRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKNALAISRAEVI 108
                 345566666666666777777777777777777777766666666665 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.3   0.00064       0.2      99     150 ..      35      86 ..      14      91 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00064
  EMP24_GP25L  99 seasdykdsakkekletleselkkleekldsikreqkylrereerlrdtnes 150
                  +++s ++ +  + kl++  + ++++++++d+++++q++l+++ ++l+++n  
   EGE27566.1  35 NDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRA 86 
                  222222222235566666666666***********************99975 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.2    0.0045       1.4      24      79 ..      22      83 ..       1      89 [. 0.69
   2 ?   11.3   3.9   0.00095      0.29       8      67 ..      36      95 ..      30     106 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0045
  TMF_TATA_bd 24 lEgElaslkeel......erleaerdeareeivklmkeneelkelkkeleelekeleelqer 79
                   +Ela+lk+++      +++e+ + ++++ +v++ + n+++++l+++ + le++++el + 
   EGE27566.1 22 TATELANLKQRIanddsaKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQA 83
                 55666666665511111156778888899999999999999999999999999999998765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00095
  TMF_TATA_bd  8 gpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkele 67
                   s++ +e l++++ +  +++ + ++++  l++ ++++++++ +l++ n +l +++++l+
   EGE27566.1 36 DDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLK 95
                 556666777777777777777777777777777777777777777777777666666665 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.5    0.0085       2.6      77     107 ..      15      45 ..       3     118 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0085
     SLATT_1  77 laaaYslaaeeLeiiraaleaeateeewakl 107
                 ++++Y+ +a+eL++++++++++++ +++++l
  EGE27566.1  15 MKKQYAVTATELANLKQRIANDDSAKQIETL 45 
                 6789*****************9999999876 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.3     0.028       8.7      18      54 ..       4      40 ..       3      56 .. 0.85
   2 ?    5.9  10.2     0.064        20      12      55 ..      56      99 ..      39     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.028
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
        SlyX 18 tieeLndvvaeqqqqidrlqrqlrllaerlkeleess 54
                ++++L +++++  +q +   ++l+ l++r+++ ++++
  EGE27566.1  4 QLQALEQTIIAMKKQYAVTATELANLKQRIANDDSAK 40
                5899**************************6655543 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.064
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 12 lafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessg 55
                + ++ + +++L+++  + +qq+d+l +  r+l  + ++l+++++
  EGE27566.1 56 IDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKNA 99
                56788889999999999999999999999999999999988765 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   9.1    0.0014      0.45      15      89 ..      15      88 ..       3     116 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0014
                .XTTB.-BHHHHHHB-....BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHH CS
       DUF16 15 vkteY.VTrkqlnefkds..nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetlelil 89
                +k++Y VT  +l + k+   n+   k+    +++l+ ++n+    +++ ++++++l+++q+a +++++++ ++ + ++
  EGE27566.1 15 MKKQYaVTATELANLKQRiaNDDSAKQ----IETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALI 88
                455555888888888877554444444....44555666666677777777777777777777777774444333333 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   9.9   0.00039      0.12     104     175 ..       2      71 ..       1      79 [. 0.87
   2 ?    3.7   1.0      0.15        47     113     148 ..      65     100 ..      59     106 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00039
  Bacillus_HBL 104 lellekLqeeiqqnqkevkqlikeLkklklklakdsknFktdvdeltsilagdsgvisqlqneiedlqgkik 175
                   l++l++L+++i+  +k+   ++ eL +lk+++a+d++   +++++l++ l+    +i++  n++ dlq++++
    EGE27566.1   2 LAQLQALEQTIIAMKKQYAVTATELANLKQRIANDDSA--KQIETLQAKLNQALVDIDHHNNRVDDLQQTQN 71 
                   689********************************985..77888888888888888888888888888765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.15
  Bacillus_HBL 113 eiqqnqkevkqlikeLkklklklakdsknFktdvde 148
                   ++qq q++ +q++ eL + + +l   ++++k + + 
    EGE27566.1  65 DLQQTQNALEQQVDELYQANRALITQNQDLKDKNAL 100
                   689999999999999999999999999998877665 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2      0.13        40      47      75 ..       4      35 ..       1      37 [. 0.72
   2 ?    9.2   5.3    0.0047       1.4      16      67 ..      29      82 ..      24      92 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.13
       Tup_N 47 tlyeLeeahrkikqqYE...eeiarLkaeLes 75
                +l  Le++  ++k+qY     e+a+Lk+++ +
  EGE27566.1  4 QLQALEQTIIAMKKQYAvtaTELANLKQRIAN 35
                56778999999999995333688888887765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0047
       Tup_N 16 lsqeass..lkaqkdeyelkiqsqiqElqqirqtlyeLeeahrkikqqYEeeia 67
                l+q + +  + +q + + +k+++ + ++++  + + +L+++++++ qq +e  +
  EGE27566.1 29 LKQRIANddSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQ 82
                55555443355688999******************************9887555 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   3.5      0.28        86      68     111 ..       4      49 ..       1      51 [. 0.55
   2 ?   12.7   9.2   0.00032     0.099      49     112 ..      36      99 ..      33     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.28
        ADIP  68 eierlqskierlktqleqlerelalvqakerq..lekklktleqkl 111
                  ++ l+++i  +k+q++ +++ela ++++ ++    k+++tl++kl
  EGE27566.1   4 QLQALEQTIIAMKKQYAVTATELANLKQRIANddSAKQIETLQAKL 49 
                 4556666677777777777777775555544311445555555555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00032
        ADIP  49 drdleqreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklk 112
                 d  ++q e+l++++++   +i++ +++++ l++   +le++++ + ++ r l +++++l++k+ 
  EGE27566.1  36 DDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKNA 99 
                 6667888999999999999999999999999999999999999888888888888888888875 PP

>> Phage_Mu_Gam  Bacteriophage Mu Gam like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.8    0.0032         1      15      74 ..      39      97 ..       2     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0032
                  HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-..-----E CS
  Phage_Mu_Gam 15 kreleeieaeaneeiaaikekleaeleplkkeieylesllkqYaeankdeLfkdgktKsl 74
                   +++e ++a++n++   i++ +++ ++ l++ +++le+++ + ++an++ ++++++ K +
    EGE27566.1 39 AKQIETLQAKLNQALVDIDH-HNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDK 97
                  45666677777777777764.57778888************************9999965 PP

>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   9.1    0.0025      0.76       8      91 ..       5      97 ..       2      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0025
       K-box  8 eeelkqEvskLkkeieklqrsqRkllGedleslslkeLqqLEqqLekslkkiRsrKe.........qllleeieelkkkekqleeenkeLrek 91
                 + l+q +  +kk++    +++ +l     ++ s k+ + L+ +L+++l  i ++ +         + l+++++el + ++ l  +n+ L++k
  EGE27566.1  5 LQALEQTIIAMKKQYAVTATELANLKQRIANDDSAKQIETLQAKLNQALVDIDHHNNrvddlqqtqNALEQQVDELYQANRALITQNQDLKDK 97
                57799999******************9999**********************9999666666666699**********************987 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.7     0.011       3.6      18      49 ..       4      35 ..       1      39 [. 0.72
   2 ?    6.1   5.2     0.031       9.5      23      60 ..      39      76 ..      35      76 .. 0.93
   3 ?    8.6   5.5    0.0052       1.6      17      46 ..      68      97 ..      67     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       DivIC 18 aykqlkqeiaalqaelaklkaeneeLeaevkd 49
                ++++l+q i a ++++a    e ++L++++++
  EGE27566.1  4 QLQALEQTIIAMKKQYAVTATELANLKQRIAN 35
                66777777777777777777777777777765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.031
                HHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXX CS
       DivIC 23 kqeiaalqaelaklkaeneeLeaevkdLksdedyieer 60
                 ++i++lqa+l++   +++  + +v+dL+++++++e++
  EGE27566.1 39 AKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQ 76
                589*******************************9986 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0052
                XHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 17 laykqlkqeiaalqaelaklkaeneeLeae 46
                +++ +l+q++++l + + +l  +n++L+++
  EGE27566.1 68 QTQNALEQQVDELYQANRALITQNQDLKDK 97
                578899*********************987 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.7    0.0024      0.75      46     110 ..      14      80 ..       2      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0024
  TSNAXIP1_N  46 eIKkEYelyiahllesqreaqyl..kaklktlsessdkraleleekreelralekeskalleeidkl 110
                 ++Kk+Y  +  +l + +++      +++++tl+++ ++  +++++ ++++ +l++ ++al++++d+l
  EGE27566.1  14 AMKKQYAVTATELANLKQRIANDdsAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDEL 80 
                 68999999988887755555444467999**********************************9997 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.5      0.11        35       5      39 ..      29      65 ..       3      66 .. 0.62
   2 ?    7.7   0.5     0.015       4.6       2      40 ..      42      80 ..      41      89 .. 0.67
   3 ?    5.8   0.2     0.057        18       1      35 [.      62      96 ..      62      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.11
   FlaC_arch  5 lEnklsklst..eletvkkeneelsksveelkenVkd 39
                l +++ + ++  ++et+++++++   +++  + +V d
  EGE27566.1 29 LKQRIANDDSakQIETLQAKLNQALVDIDHHNNRVDD 65
                4444444444456666666666666666666666655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.015
   FlaC_arch  2 idelEnklsklsteletvkkeneelsksveelkenVkdl 40
                i++l+ kl++  + ++   +  ++l+++ + l+++V +l
  EGE27566.1 42 IETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDEL 80
                677778888777766666666666666666666666654 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.057
   FlaC_arch  1 ridelEnklsklsteletvkkeneelsksveelke 35
                r+d+l++  + l+ +++ + + n  l ++ ++lk+
  EGE27566.1 62 RVDDLQQTQNALEQQVDELYQANRALITQNQDLKD 96
                78999999999999999999888888888888876 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.9    0.0071       2.2      12      48 ..       4      40 ..       1      58 [. 0.76
   2 ?    5.6   6.3     0.057        18      12      56 ..      55     101 ..      39     109 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0071
       Spc24 12 elsdleselesleselaelkeeleeleeeseekeser 48
                +l+ le+++ +++++ a   +el++l++   +++s+ 
  EGE27566.1  4 QLQALEQTIIAMKKQYAVTATELANLKQRIANDDSAK 40
                7999************************999933332 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.057
       Spc24  12 elsdleselesleselaelkeeleeleeesee...keservedetllk 56 
                 ++++ ++ +++l+++++ l+++++el + + +   ++++  +d+++l 
  EGE27566.1  55 DIDHHNNRVDDLQQTQNALEQQVDELYQANRAlitQNQD-LKDKNALA 101
                 455556666677777777777777777666666532222.45666655 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2       1.4   4.3e+02      38      63 ..       8      33 ..       1      58 [. 0.60
   2 ?    9.1   2.9    0.0046       1.4      33      67 ..      61      95 ..      39      97 .. 0.89
   3 ?    6.2   0.2     0.037        12       9      32 ..      86     108 ..      83     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 1.4
    JIP_LZII 38 LtsereiLreEleslqkakerlesri 63
                L +   ++++    + ++++ l++ri
  EGE27566.1  8 LEQTIIAMKKQYAVTATELANLKQRI 33
                44444444555555555555555554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0046
    JIP_LZII 33 arvdeLtsereiLreEleslqkakerlesrikelE 67
                +rvd+L++ +++L++ +++l +a+++l ++ ++l 
  EGE27566.1 61 NRVDDLQQTQNALEQQVDELYQANRALITQNQDLK 95
                79***********************9999999886 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.037
    JIP_LZII   9 nLikENteLletknaLnvvkddLI 32 
                  Li +N++L++ knaL + + + I
  EGE27566.1  86 ALITQNQDLKD-KNALAISRAEVI 108
                 69******987.9*****998877 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  10.1    0.0028      0.86      13      91 ..       3      80 ..       1      90 [. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0028
     BLOC1_2 13 aeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeL 91
                a+l+a  + +  ++k   +++++ ++lk+++a+  +++++++ ++++l++ l  id  +++v++L+++ ++L++ + eL
  EGE27566.1  3 AQLQALEQTIIAMKKQYAVTATELANLKQRIAN-DDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDEL 80
                677777888888888888888899999988886.678899999999999999999999999999999999999999888 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.4     0.003      0.92      12      69 ..       4      63 ..       1      67 [. 0.87
   2 ?    5.4   5.7     0.062        19      17      54 ..      67     104 ..      60     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.003
  TolA_bind_tri 12 ilearsqlllelqqqlealqqelreLRG..qiEelqyqleqleerQrdlYldlDerlrkl 69
                   +l+a +q+++ + +q     +el+ L+    +++ + q+e+l+ + ++  +d+D   +++
     EGE27566.1  4 QLQALEQTIIAMKKQYAVTATELANLKQriANDDSAKQIETLQAKLNQALVDIDHHNNRV 63
                   57777899******************76225799********************988875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.062
  TolA_bind_tri  17 sqlllelqqqlealqqelreLRGqiEelqyqleqleer 54 
                    +q++  l qq+++l q  r L  q+++l+ ++  ++ r
     EGE27566.1  67 QQTQNALEQQVDELYQANRALITQNQDLKDKNALAISR 104
                    57888888999999999999888888888777666655 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.1     0.011       3.5      27      91 ..       4      77 ..       1      79 [. 0.76
   2 ?   11.1   4.9    0.0011      0.33       7      70 ..      48     112 ..      46     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.011
       Mod_r 27 evkqlkeekeellaeneslaeknlslep.........eleelrselqekleelkelekefeekeqeldellqkf 91
                ++++l++    + ++   +a +  +l++         ++e l+++l+++l  +++ ++++++++q +++l q++
  EGE27566.1  4 QLQALEQTIIAMKKQYAVTATELANLKQrianddsakQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQV 77
                5566666666666666666666666655566666777*******************************998876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0011
       Mod_r   7 eLqelledeeklealvktl.pevkqlkeekeellaeneslaeknlslepeleelrselqekleel 70 
                 +L++ l d +  +++v++l ++ ++l+++ +el ++n++l  +n +l+++     s+ +  +++l
  EGE27566.1  48 KLNQALVDIDHHNNRVDDLqQTQNALEQQVDELYQANRALITQNQDLKDKNALAISRAEVIRDWL 112
                 688999999999999**994447789******************999886666666555555555 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.0    0.0031      0.95     339     419 ..       5      90 ..       1     110 [. 0.53

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0031
        FapA 339 lkeleeeleeleeeleklkkkikklpklkaekq....lesekkeqlkklletkeklkeeleeleeelkelkeeleskkeea..kikv 419
                 l++le+ + +++++      +++ l++ ++ ++    + ++ + +l+++l +  ++++++ +l++ +++l++++++ ++++   i  
  EGE27566.1   5 LQALEQTIIAMKKQYAVTATELANLKQ-RIANDdsakQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANraLITQ 90 
                 455555555554444444444444444.33222000023333444444444448888888888888888888888886655423333 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   7.8    0.0027      0.84     152     226 ..       4      74 ..       1      94 [. 0.82
   2 ?   -0.8   0.1       2.4   7.6e+02     169     196 ..      83     110 ..      73     118 .. 0.40

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0027
        CorA 152 elaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdlldelerllemlealrerleslqdtyssll 226
                 +l +l+++++ ++++ a + + l ++l+   +   +d+ ++++++l+ +l+++l ++++  +r++ lq+t ++l 
  EGE27566.1   4 QLQALEQTIIAMKKQYAVTATEL-ANLK---QRIANDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALE 74 
                 56677788888888888888888.5555...57777777888***************************999875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.4
        CorA 169 pnrevlkrllakaddkllddedkeylrd 196
                 +nr++++++ + +d++ l   ++e +rd
  EGE27566.1  83 ANRALITQNQDLKDKNALAISRAEVIRD 110
                 3333333333333333333333333443 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.3     0.003      0.94     620     698 ..      20      95 ..       3     115 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.003
    Prominin 620 kltkvnletlaekleelanelsngk.....knlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkll 698
                  +t ++l +l+++   +an+          ++l+ +l+++  d++  ++++v+ l+++ + l+++v +l + n+ l ++ ++l 
  EGE27566.1  20 AVTATELANLKQR---IAND----DsakqiETLQAKLNQALVDID-HHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLK 95 
                 3444444444444...3333....233234566666666666664.58889999999999999999999995555544444433 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  13.2     0.018       5.5      20     110 ..      14      96 ..       1     109 [. 0.55

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.018
      APG6_N  20 qaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelql 110
                 +++k+     + l++lk++           +++ +++e+l+++ +++l  ++   +  ++l++  +ale++ ++l + +++ +++ ++l+ 
  EGE27566.1  14 AMKKQYAVTATELANLKQRI--------ANDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKD 96 
                 33333333333333333332........334556666666666666666666666666666666666666666666666666666666554 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  10.6      0.04        12       6      60 ..      39      93 ..       1     107 [. 0.72

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.04
     DUF4795  6 aellkklqeaieklqeelekleekvkelekrledkekklealkkqieelekvkad 60
                a+ ++ lq+++ +   +++  +++v +l+++++++e++++ l+++ ++l ++++d
  EGE27566.1 39 AKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQD 93
                3344444444444444444566888899999999999999999988888888766 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1       1.2   3.7e+02      16      45 ..       2      31 ..       1      36 [. 0.56
   2 ?   10.7   5.3    0.0011      0.35       3      59 ..      40      96 ..      36     105 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.2
       Sec34 16 leqtdealeqLeeleekfksvsektsslhe 45
                l+q++++++++  +++++   +++  +l++
  EGE27566.1  2 LAQLQALEQTIIAMKKQYAVTATELANLKQ 31
                555566666666666666666655555554 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0011
       Sec34  3 dqLeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrlee 59
                +q+e+ ++++++ l ++d  ++ +++l++  ++ +++  +l +a   l++++++l++
  EGE27566.1 40 KQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKD 96
                455555666666666666666666666666666666666666666666666666654 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.0    0.0075       2.3      95     176 ..      10      93 ..       2     101 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0075
      DUF724  95 nkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallk...ekkeaadkeiarlkseaekleeeled 176
                 ++++++k++++ +++e+ +l+++i++++s+k+ +e+  ++l+++ +++  ++ ++    + ++a ++++ +l + +++l ++ +d
  EGE27566.1  10 QTIIAMKKQYAVTATELANLKQRIANDDSAKQ-IETLQAKLNQALVDIDHHNNRVDdlqQTQNALEQQVDELYQANRALITQNQD 93 
                 56778888888888888888888888777666.7888888888888777777665555455556666666666666555555555 PP

>> UPF0449  Uncharacterised protein family UPF0449
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.4       1.2   3.8e+02      65      96 ..      17      50 ..       3      57 .. 0.58
   2 ?    8.4   6.6    0.0096         3      36      79 ..      58      99 ..      25     118 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 1.2
     UPF0449 65 rtylelnerLeeakeeLkq..kceeLktageeLe 96
                ++y  + ++L + k+++ +    ++++t+  +L+
  EGE27566.1 17 KQYAVTATELANLKQRIANddSAKQIETLQAKLN 50
                4555666666666666643113445555555555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0096
     UPF0449 36 sdsveedkkassseeedleaeveelYeqvrtylelnerLeeake 79
                +++ + d+ +  + +++le++v+elY+  r+++  n+ L+ ++ 
  EGE27566.1 58 HHNNRVDDLQ--QTQNALEQQVDELYQANRALITQNQDLKDKNA 99
                3332222222..24677777788888888888887777776554 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.8      0.01       3.2      27      78 ..       3      52 ..       1      57 [. 0.89
   2 ?    7.6   3.4     0.015       4.7       7      46 ..      55      94 ..      49     113 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.01
      CENP-H 27 eeltevekenlrlkrknrelaaellelakekesekeklkeelekleaelkks 78
                ++l+ +e+ ++++k++ +  a+el+ l++  ++++   ++++e+l+a+l+++
  EGE27566.1  3 AQLQALEQTIIAMKKQYAVTATELANLKQRIANDD--SAKQIETLQAKLNQA 52
                78999*******************99999999998..689999999999875 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.015
      CENP-H  7 qrdelssellklsqelrelqeeltevekenlrlkrknrel 46
                 +d+ + ++ +l+q  ++l+++++e+ + n++l ++n+ l
  EGE27566.1 55 DIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDL 94
                5667777777788888888888888888888888888776 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   7.2    0.0099       3.1      44     120 ..      13      80 ..       1      98 [. 0.45

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0099
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkl..deqkeiskeikeevtevredlseigedvesvkeavegleskleri 120
                   + kq     +           +++++ +++  d++++ ++ ++++++++  d+++ ++ v+ ++++ + le++++++
  EGE27566.1  13 IAMKKQYAVTAT-----------ELANLKQRIanDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDEL 80 
                 333333333333...........34444443322334444444444444444444444444444444444444444444 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.8    0.0033         1      19      70 ..       3      55 ..       1      70 [. 0.71
   2 ?    1.8   5.0      0.56   1.7e+02      29      54 ..      43      68 ..      38     110 .. 0.42

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0033
                CCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHH.HHHHHHHHHHHHHHHH CS
        GrpE 19 eeleelekevkelkekllrllaefenlrkrtekeke.eakkfaiekfakdLLp 70
                ++l++le+ + ++k+++  ++ e+ nl++r +++ + +  ++   k+ ++L++
  EGE27566.1  3 AQLQALEQTIIAMKKQYAVTATELANLKQRIANDDSaKQIETLQAKLNQALVD 55
                68899999999999999999999999999997776614444444455555544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.56
                TSCCCCCCTTTTTTTTHHHHHHHHHH CS
        GrpE 29 kelkekllrllaefenlrkrtekeke 54
                + l+ kl+++l +++ +++r+++ ++
  EGE27566.1 43 ETLQAKLNQALVDIDHHNNRVDDLQQ 68
                33333333333333333333322111 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.9    0.0066       2.1      24     115 ..      12      98 ..       3     118 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0066
       Atg14  24 lyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRr 115
                 ++  ++++a + +e + lk++i    + k+  e+l++k+ +   +++   +++ dl++  + l++++++l +++    + l +++++lk+++
  EGE27566.1  12 IIAMKKQYAVTATELANLKQRIANDDSAKQ-IETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQAN----RALITQNQDLKDKN 98 
                 566667777777777777777775555555.4444445555555555555555555555555555555554444....44444444444333 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.4    0.0073       2.2      12     101 ..       7      99 ..       2     106 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0073
                 T.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT.......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTSEE CS
        PCRF  12 lsdpevwedqekakklskelaeleeivealeeleealedleeakell.e..edeelaelaeeeleelekeleeleeelkklLlpkdendekna 101
                 + ++++++ ++++  +++ela+l++ +++ +++++ +   ++++++l +  + ++  +  ++  ++le++++el +  + l++ ++   +kna
  EGE27566.1   7 ALEQTIIAMKKQYAVTATELANLKQRIANDDSAKQIETLQAKLNQALvDidHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKNA 99 
                 446678888899999999999999999988888888877777777763332222222344667899999999997777777775555555555 PP

>> T3SS_needle_E  Type III secretion system, cytoplasmic E component of needle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.9   0.00046      0.14       4      57 ..      29      84 ..      26      94 .. 0.84
   2 ?    2.2   1.7      0.66     2e+02      16      35 ..      66      85 ..      58     114 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00046
                   HHHHHCCCC.THHHHHHHHHHHHHHHHHHHHHCCTSSHHHHHH.HHHHHHHHHHHH CS
  T3SS_needle_E  4 LEdrLrhap.geqakelqdrLeaArarLkqalsspqspeeYqq.lqllaeAleaAe 57
                   L  r+++++ ++q++ lq++L++A+ ++   + +  ++++ q  l+++ + l +A 
     EGE27566.1 29 LKQRIANDDsAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNaLEQQVDELYQAN 84
                   557899***9******************************9963666666666665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.66
                   HHHHHHHHHHHHHHHHHHHC CS
  T3SS_needle_E 16 akelqdrLeaArarLkqals 35
                   +++ q+ Le+   +L qa++
     EGE27566.1 66 LQQTQNALEQQVDELYQANR 85
                   33333333333333333333 PP

>> JAKMIP_CC3  JAKMIP CC3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  13.7     0.008       2.5      80     181 ..       2     100 ..       1     104 [. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.008
  JAKMIP_CC3  80 laeyqalqrayalLreklggeldaerelkareqleselrktkskikdLeeaLaqkGqdskwveekQalikrnqeLvekikkleeeeskLkqeiqdlrdq 178
                 la+ qal ++   ++++ +++     +lk+r       +++++  ++L++aL    + +  v++ Q   +++  L +++++l + +  L  + qdl+d+
  EGE27566.1   2 LAQLQALEQTIIAMKKQYAVTATELANLKQRIANDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQ---QTQNALEQQVDELYQANRALITQNQDLKDK 97 
                 677788888888888888777766667776665566667777777779999999999999999977...45555999********************** PP

  JAKMIP_CC3 179 nel 181
                 n l
  EGE27566.1  98 NAL 100
                 *87 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.8     0.031       9.5      90     136 ..       2      50 ..       1      54 [. 0.85
   2 ?    8.3   3.8     0.005       1.5      88     146 ..      51     109 ..      49     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.031
   PspA_IM30  90 laeikslekqaealetqlaqqrsaveqlrkqle..aletkieelkakke 136
                 la+++ le+++ a ++q+a  ++  ++l++ ++  + +++ie l+ak +
  EGE27566.1   2 LAQLQALEQTIIAMKKQYAVTATELANLKQRIAndDSAKQIETLQAKLN 50 
                 899*****************************82246788888888876 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.005
   PspA_IM30  88 ealaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaak 146
                  al  i  + + + +l++ ++ ++++v++l ++ +al t+ ++lk+k  l ++r+++++
  EGE27566.1  51 QALVDIDHHNNRVDDLQQTQNALEQQVDELYQANRALITQNQDLKDKNALAISRAEVIR 109
                 678889999**************************************999999999875 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.9     0.012       3.6      20      87 ..      11      80 ..       2      82 .. 0.84
   2 ?    6.3   1.4     0.037        12      26      59 ..      61      94 ..      54     110 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.012
      DUF948 20 vllklkktldeaaatieelekqv..dpilkevedllakvnelledvneklekvdplteavadlgesvsel 87
                +++ +kk    +a+ +++l++++  d   k++e+l ak n+ l d+ ++ ++vd l +  + l ++v el
  EGE27566.1 11 TIIAMKKQYAVTATELANLKQRIanDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDEL 80
                66777777778888888888887446799***************************99999999999887 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.037
      DUF948 26 ktldeaaatieelekqvdpilkevedllakvnel 59
                + +d +++t + le+qvd++ +  ++l+++ ++l
  EGE27566.1 61 NRVDDLQQTQNALEQQVDELYQANRALITQNQDL 94
                5688899999999999999876555555554443 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.9     0.011       3.4      11      80 ..       1      67 [.       1      69 [. 0.85
   2 ?    6.1   0.9     0.057        18      17      70 ..      61     116 ..      52     119 .] 0.60

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.011
     DUF2203 11 lLpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeieelGvevkdle 80
                +L +l+ l + ++a++k+++ +++el++ k++ +       ++++e+l+a++++++  i+++   v dl+
  EGE27566.1  1 MLAQLQALEQTIIAMKKQYAVTATELANLKQRIA---NDDSAKQIETLQAKLNQALVDIDHHNNRVDDLQ 67
                5889999999999*******************97...567788899999999999999888888777775 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.057
     DUF2203  17 elleelralrkeleeleeeleeakaeaekse..aaeleaeleeleaeieelveeie 70 
                 +++++l+++++ le+ ++el +a+++  +++   + ++a   + ++ i++++++i+
  EGE27566.1  61 NRVDDLQQTQNALEQQVDELYQANRALITQNqdLKDKNALAISRAEVIRDWLSKID 116
                 45666666666666666666666555443334344555555566667788888776 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   8.4     0.016       4.8     220     299 ..       4      84 ..       1      98 [. 0.73

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.016
       FAM76 220 avtqLkeeiaslkkqleqkdqellekdkkitel.kaellekekelreklkelekeakekieklekkirellkevaelskkk 299
                 +++ L+++i  +kkq +   +el + ++ i++   a+++e+ +   ++      +++++++ l+++ ++l ++v el +++
  EGE27566.1   4 QLQALEQTIIAMKKQYAVTATELANLKQRIANDdSAKQIETLQAKLNQALVDIDHHNNRVDDLQQTQNALEQQVDELYQAN 84 
                 567788888889999999999999888888865134455554544555555677888888889988888888888877654 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   9.0      0.16        49       9      57 ..      41      95 ..      20     109 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.16
     DUF2205  9 dveklerearerLqq......qakeLqssLqaLaervdeVkeehdKLesenrfLq 57
                ++e l+    ++L        +++ Lq++ +aL ++vde  + +  L ++n+ L 
  EGE27566.1 41 QIETLQAKLNQALVDidhhnnRVDDLQQTQNALEQQVDELYQANRALITQNQDLK 95
                4444444444444446666669999999999999999999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2623  (0.146299); expected 358.6 (0.02)
Passed bias filter:                      808  (0.0450667); expected 358.6 (0.02)
Passed Vit filter:                       156  (0.00870099); expected 17.9 (0.001)
Passed Fwd filter:                        64  (0.00356964); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 783.45
//
Query:       EGE27567.1  [L=212]
Description: yecA family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-15   58.5   1.0    1.4e-15   58.0   1.0    1.1  1  UPF0149   Uncharacterised protein family (UPF0149)


Domain annotation for each model (and alignments):
>> UPF0149  Uncharacterised protein family (UPF0149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   1.0   7.9e-20   1.4e-15      17     168 ..      22     168 ..      11     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 7.9e-20
                 ...HHHHHHHHHHHHCT.HHHCCCHHHHCCCC.......STCHHHHHHHHHHHHHHHHHHCTTTT.S------....S-HHHHHHHHHHHHHHHHHHHH CS
     UPF0149  17 ldlaelhGfltgllcgpellppeeWlpallgeapafsdeeegeallallkrlyneiaaqLadede.fefelll....edladraeplaeWceGFlqGlg 110
                 ++++elhG++tg++   ++ + + W  +l + +     +   e +l+ll  + +++  +L+d+d+ ++ e+l     ++l +r+ +l +W+ G++ G+g
  EGE27567.1  22 ISISELHGIMTGIMTVCHAPDNDVWVRLLEEMS----FGIPSESALELLTDYAEDVSFALKDKDDaYGYEPLVpddeHELYERVLALKDWAGGYITGIG 116
                 689************************998883....5689999****************9976625678888****99******************** PP

                 HCTTT.GGG-SSHHHHHHHHHHHHHCT---TTTS-SSHHHHHHHHHHHHHHHHHHHHH CS
     UPF0149 111 lagddWlkdasseelaelLedlaalarleiaeeeeedeedeealeelieavpvavlll 168
                 +ag   l    s++ +el+  l+++a + + ++ee  e  ee++ +l+e++++  ++l
  EGE27567.1 117 VAGVT-L----SADENELIGTLMEIAAIRL-DDEESLEGGEEMWLQLFEFARMVPVSL 168
                 ***99.4....68889*************7.9999*****************987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1547.69
//
Query:       EGE27568.1  [L=323]
Description: riboflavin biosynthesis protein RibF [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-44  150.4   0.0    5.2e-44  149.9   0.0    1.1  1  FAD_syn          FAD synthetase
    2.9e-27   95.2   0.0    4.4e-27   94.6   0.0    1.3  1  Flavokinase      Riboflavin kinase
     0.0004   20.6   0.0    0.00069   19.8   0.0    1.4  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   8.7e-48   5.2e-44       8     157 ..      17     160 ..      12     161 .. 0.97

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 8.7e-48
     FAD_syn   8 avvtlGnFDGvHlGHqallkkaveaakekglpsvvvtFephPrevlakekaparLttleeklelleelgvdavlvvdFtkefaelsaeeFiekllvekl 106
                  ++t+Gn+DGvHlGHqall+ + + ak+ gl  +v++Fep+Pre+++++++parLt+l+ek+e++ +lgv++++v  F+ +f +lsa +F++ ll  +l
  EGE27568.1  17 LALTIGNYDGVHLGHQALLSALADDAKAMGLLPAVMVFEPQPREYFSPDNPPARLTNLTEKAEQITQLGVQYLIVASFDDAFRSLSAAAFVD-LLH-SL 113
                 689****************************************************************************************5.476.9* PP

     FAD_syn 107 kvkavvvGfdfrfGkkregdvellkelgaklgfevevvpkveleeekisst 157
                 +v+++v+G+dfrfG++r gd ++l+++g    f+v+ +p++++++++iss+
  EGE27568.1 114 NVSHLVLGDDFRFGQDRVGDKAFLQAAG----FSVDNLPSITQNGVRISSS 160
                 ************************9998....*****************97 PP

>> Flavokinase  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   7.4e-31   4.4e-27       1     106 [.     178     314 ..     178     318 .. 0.94

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 7.4e-31
                  HTS-EEEEEEEES-SSCHTTTT--EEEEE-S-B-.GTSEEEEEEEE...........................EEEEEEEETTTSSE...EEEEETT- CS
  Flavokinase   1 LgrpyslsgkVvkGkkrGrelgfpTaNlelekll.pkkGVYavrvk...........................gvaniGvrptfknk...vEvhildf 67 
                  Lgr+y ++g V +G+k+Gr+l+fpTaN++l +l  + +G++a+ v                            g+++iG rp +++k   +Evh+ df
   EGE27568.1 178 LGRSYGITGVVEHGDKIGRTLDFPTANVSLGRLKpALHGIFAADVIayqngvrldwaslgqggvmglkqgslfGAVSIGLRPSVGGKqwrLEVHLPDF 275
                  89****************************5555378********99*************************************9977889******* PP

                  -S--TTSEEEEEEEEEEEE----SSHHHHHHHHHHHHHH CS
  Flavokinase  68 sedlygkelrvellkflRpekkFdsleaLkaqikkDvek 106
                  +++lyg +l v +++fl+ e+++d+++aLka i++Dv +
   EGE27568.1 276 NGELYGVTLWVVFTHFLHGERHYDGVDALKAGITNDVVA 314
                  ************************************965 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.2e-07   0.00069       1     142 [.      19     164 ..      19     165 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.2e-07
                      EEEE--TT--HHHHHHHHHHHHHSSES.....EEEEEESSTHCSST-SCSSTHHHHHHHHHHH..TTCTTEEEEEEESEHH........HHHHH CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleed.....livgvpsdeppkkkkkplasaeeRlemlela..kevdevisvdpweltr........evlkk 79 
                      l+ G++D +HlGH +ll  +++  +       ++v+ p +++  +   p+a + + +e  e++    v+++i++++++  r        ++l++
       EGE27568.1  19 LTIGNYDGVHLGHQALLSALADDAKAMgllpaVMVFEPQPREYFSPDNPPARLTNLTEKAEQItqLGVQYLIVASFDDAFRslsaaafvDLLHS 112
                      578****************999999999885555555555555555466666666666666665559*************************** PP

                      TTTTEEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHH CS
  CTP_transf_like  80 lkpdklylvigadvledfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkire 142
                      l++    lv+g+d        ++     + ++ +++s++      l   +++   iSs+ +r+
       EGE27568.1 113 LNVS--HLVLGDDFRF----GQDRVGDKAFLQAAGFSVD-----NLPSITQNGVRISSSLVRQ 164
                      ****..******9633....3333333333445555444.....3334456677788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2519.56
//
Query:       EGE27569.1  [L=276]
Description: tRNA (guanine-N(7)-)-methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-51  173.0   0.0    5.5e-51  172.5   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
    6.4e-06   26.8   0.0    1.8e-05   25.4   0.0    1.8  2  Methyltransf_25  Methyltransferase domain
      0.003   17.4   0.0     0.0066   16.3   0.0    1.6  1  Methyltransf_31  Methyltransferase domain
     0.0073   16.9   0.1       0.03   15.0   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.015   16.0   0.0      0.079   13.7   0.0    2.2  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.5   0.0   1.5e-54   5.5e-51       2     173 .]     103     271 ..     102     271 .. 0.97

  Alignments for each domain:
  == domain 1  score: 172.5 bits;  conditional E-value: 1.5e-54
                     -EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTS CS
  Methyltransf_4   2 apvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllq 96 
                     a++vleiG+G+G++l ++Ak+ P++nf+G+E++++++ ++++ +++ +l+Nl+i++gda+ +l + l++++l+ +++ FPDPw Kkrh KrR+++
      EGE27569.1 103 ASLVLEIGFGMGDSLFEMAKNSPTTNFVGVEVHEPGIGRLVALADEAKLHNLKIINGDAVALL-DNLPPQHLDTVQLYFPDPWQKKRHYKRRFVT 196
                     6799*******************************************************6666.889**************************** PP

                     HHHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCSTTEEESSCCCSCCTCHCHHCCCSSTTCCCCCCTTSS-EEE CS
  Methyltransf_4  97 pellkelarvLkkgGvlelaTDveeyaeemlkvleeeplferlskeeeleeeplsvlriatkyeqkvqskgkeiyel 173
                     + +++++arvLk gG +++aTD+e ya +ml+vl+  p+f + +++ +  ++p   +r++tk+e++  + g+ +++l
      EGE27569.1 197 HDRMAKVARVLKSGGKFHAATDWEHYAFWMLEVLDGMPEFINSCEKGNFTPRPD--FRPLTKFEKRGITHGHGVWDL 271
                     ***************************************************999..******************985 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.2     8e+03      58      59 ..      34      35 ..       8      70 .. 0.51
   2 !   25.4   0.0     5e-09   1.8e-05       1      97 []     106     211 ..     106     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.2
                     BS CS
  Methyltransf_25 58 lp 59
                     l 
       EGE27569.1 34 LA 35
                     22 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 5e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS..SSTTTEEEEEE.....EST.GGGSSHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlp..fedgsfDlvvs.....sga.lhhlsdedleka 85 
                      vL++G G G+ ++++ak+ +  +++gv++ e  + +  + a+e++l n+++++gda +l   ++ ++ D v +     ++   h+  +  +++ 
       EGE27569.1 106 VLEIGFGMGDSLFEMAKNSPTTNFVGVEVHEPGIGRLVALADEAKLhNLKIINGDAVALLdnLPPQHLDTVQLyfpdpWQKkRHYKRRFVTHDR 199
                      9*****************889********************999999*********88742368889999998656664454556666677889 PP

                      HHHHHHHEEEEE CS
  Methyltransf_25  86 lkeiarvLkpgG 97 
                      ++++arvLk gG
       EGE27569.1 200 MAKVARVLKSGG 211
                      999******999 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.8e-06    0.0066       7     113 ..     106     219 ..     101     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-06
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkile.... 95 
                      vl++G G G+ +fe+a +  p  ++vG++  e  i +  + a++ +l n++   gd+ + l++ l ++  D +       +++dp +  +    
       EGE27569.1 106 VLEIGFGMGDSLFEMA-KNSPTTNFVGVEVHEPGIGRLVALADEAKLHNLKIINGDAVAlLDN-LPPQHLDTVQL-----YFPDPWQKKRhykr 192
                      99**************.7788999***********************************6776.68889999766.....44444444444445 PP

  Methyltransf_31  96 .........eiervlkpggilliedpr 113
                               ++ rvlk+gg + +++ +
       EGE27569.1 193 rfvthdrmaKVARVLKSGGKFHAATDW 219
                      555666666889999999988776655 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.3   1.2e+04      23      42 ..      21      40 ..       9      56 .. 0.61
   2 !   15.0   0.0   8.2e-06      0.03       1      94 [.     107     213 ..     107     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.3
                     EEES-HHHHHHHHHHCCHHT CS
  Methyltransf_11 23 gvDlskemlklakekaseeg 42
                     ++D ++  ++lak ++ +e+
       EGE27569.1 21 AIDKDEISTRLAKLAQTPEQ 40
                     45555555555555555554 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 8.2e-06
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCT..SS-TT-EEEEEEES-CCC-C........CHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadaekl..pfednsfDlvvssevlhhve........dpekal 81 
                      L++G G G  + ++ak+   ++ vgv++ +  + +  + a e++l +++++ +da  l  +++ +  D v +++   + +          ++ +
       EGE27569.1 107 LEIGFGMGDSLFEMAKNSptTNFVGVEVHEPGIGRLVALADEAKLhNLKIINGDAVALldNLPPQHLDTVQLYFPDPWQKkrhykrrfVTHDRM 200
                      89*************99899*************88877777777789*********96577************944444223334455677889 PP

                      HHHHHHEEEEEEE CS
  Methyltransf_11  82 keiaRvLkpgGll 94 
                      +++aRvLk gG++
       EGE27569.1 201 AKVARVLKSGGKF 213
                      99*********97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.2e-05     0.079       1      71 [.     107     177 ..     107     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvv 71 
                      LeiG G G+ l++++++ p+++++gv++++  i +  +   + + +n + ++ +a  lld  ++++ D+v 
       EGE27569.1 107 LEIGFGMGDSLFEMAKNSPTTNFVGVEVHEPGIGRLVALADEAKLHNLKIINGDAVALLDNLPPQHLDTVQ 177
                      8********************************88888888889999999999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2286.52
//
Query:       EGE27570.1  [L=312]
Description: hypothetical protein EA1_01722 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-22   77.3   9.1    8.8e-22   77.3   9.1    1.9  2  DUF2628        Protein of unknown function (DUF2628)
    7.8e-05   23.6   0.4    0.00011   23.0   0.4    1.2  1  Pilin          Pilin (bacterial filament)
  ------ inclusion threshold ------
       0.68    9.9   6.9       0.19   11.7   3.1    2.0  2  TB2_DP1_HVA22  TB2/DP1, HVA22 family


Domain annotation for each model (and alignments):
>> DUF2628  Protein of unknown function (DUF2628)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   9.1   1.5e-25   8.8e-22       9      94 .]      30     146 ..      22     146 .. 0.90
   2 ?   -1.9   0.2      0.74   4.4e+03      48      63 ..     175     190 ..     172     205 .. 0.57

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 1.5e-25
     DUF2628   9 l............erfafvedg.kirlsfnvwAfffgfiwLlyrklwlkalvllv.....iavavsvvlavl..........gfsdavrlllalliail 79 
                 +            +rfa +++  ++   ++++Aff++f+wLlyrk++l+++v++v     i+v+++++lav+          g+++ vr+l++l+++++
  EGE27570.1  30 RwfighrsqayylRRFAEFDRVgRLHAKWHWAAFFMTFGWLLYRKRYLDCVVYCVagwsfIKVNIVIILAVAeyaligfladGMQWPVRILIGLAVWVF 128
                 45555555666779*****998899999*********************************************************************** PP

     DUF2628  80 lgleans...lyylkleR 94 
                 ++ ++++   +yy++++R
  EGE27570.1 129 WSGMVARwadAYYYRTAR 146
                 ****9998999****998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.74
     DUF2628  48 llviavavsvvlavlg 63 
                 ll+++va++++  +l+
  EGE27570.1 175 LLGLSVAFAMFGLILS 190
                 5555555555544443 PP

>> Pilin  Pilin (bacterial filament)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.4   1.9e-08   0.00011      17     108 ..     221     310 ..     211     311 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.9e-08
                 HHHHHHHCCCSSSCTCCCCCTTBSTCSCCTCEEEEECCCEECCEEEEEECCCSSTC..CTTEEEEEEEECTTSCEEEEEEES-SS-GGGSSGGC CS
       Pilin  17 tavaeaalnegktpttaaadiGlasstaicgvisvtveaatggtitatfggnaaak..ikgktltltrtadsgsgkWtCgtattvdekflPagC 108
                  +v  +++n+g++p++ +     +  ++i+ v + + + +t+++++at+ +++     +kg+tlt+  t ++ + +W C+t  ++ +k  P+ C
  EGE27570.1 221 KRVDVIMANTGQCPVNLPV-TSTHHRADIQ-VVTQADGINTKCAVVATVLKASYPLsyLKGRTLTIYSTPTQHGLVWRCQT--SLSKKQTPKRC 310
                 5566678899999999887.6666666664.44445556666******9999887799***********9999********..9********99 PP

>> TB2_DP1_HVA22  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.1   3.1e-05      0.19      18      62 ..      57     102 ..      44     109 .. 0.89
   2 ?   -2.5   0.1      0.86   5.1e+03      34      48 ..     189     201 ..     179     213 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
  TB2_DP1_HVA22  18 t.kwltYWvvfafltvvesladvllswiPfYylfKllfllwlvlpq 62 
                    + +w  ++++f+ l+  ++++d++++++  ++++K+ +++ l++ +
     EGE27570.1  57 KwHWAAFFMTFGWLLYRKRYLDCVVYCVAGWSFIKVNIVIILAVAE 102
                    447************************************9998865 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.86
  TB2_DP1_HVA22  34 esladvllswiPfYy 48 
                     s+  ++ +++P+Y 
     EGE27570.1 189 LSI--IVGQFVPMYI 201
                    222..3445778885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2696.42
//
Query:       EGE27571.1  [L=242]
Description: putative fimbrial assembly protein FimC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-32  111.0  26.3    9.7e-32  110.8  26.3    1.0  1  TraX      TraX protein


Domain annotation for each model (and alignments):
>> TraX  TraX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8  26.3   5.4e-36   9.7e-32       3     215 ..      14     238 ..      12     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 5.4e-36
        TraX   3 gdllKilAlvlMviDHvgllvlknkai....lrilGRlAfPlFafllaeglartenrkrylkrLllFalisevpfdlavk......llfelvslNilft 91 
                 ++ lK++ l+ M+iDH+g +++++  +    ++ +GRl +P+ a+ l++gl +t+n++ yl+rLl+Fa++s+++f+++         + ++ + N+lf+
  EGE27571.1  14 TFHLKLITLIAMLIDHIGWVFVATYSMtaeiMHTVGRLVAPMMAYFLVMGLCHTQNQWAYLGRLLAFAVLSQPIFMAFQYvigsvdIVTQVLWGNVLFS 112
                 678***************5554443333444********************************************9998888888889999******** PP

        TraX  92 lllgllvlllieklkkeeklliivlvivlivvlssldygiagvllilvfylllrrklkrkalvavlaivvlalnllasv....gvrqliallaipllll 186
                 l++ l++l++++ +   +    +  v+++++++++ +yg+a v  ++vf ++ ++kl ++ + a+ + ++ +l + ++     g+ ++ + +a+pl+  
  EGE27571.1 113 LAASLAALMIWQMSVPMTL--RVLGVLAMAMIAEIGEYGAAMVMWVMVFEIFKHDKLLQLTAYALSVPLAHYLIYGWALtvglGWMNVGMFFALPLIYY 209
                 ************9998664..4555555556677889************99999977666555554444433333333346779*************99 PP

        TraX 187 yakngkkgkklkylfyafYpvHLliLlll 215
                  + ++ ++   +y+fy+fYp+HLl+L+ l
  EGE27571.1 210 HTGQQGRRLGGRYFFYLFYPIHLLMLVCL 238
                 98888888889***************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2124.26
//
Query:       EGE27572.1  [L=762]
Description: replication restart DNA helicase PriA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-27   94.1   0.0    8.4e-27   92.9   0.0    1.7  1  PriA_3primeBD   3′ DNA-binding domain (3′BD)
    5.9e-18   65.5   0.3    2.3e-17   63.6   0.3    2.1  1  PriA_C          Primosomal protein N C-terminal domain
    3.4e-14   53.2   0.1    1.3e-13   51.3   0.0    2.1  2  ResIII          Type III restriction enzyme, res subunit
    3.6e-14   52.9   0.1      4e-13   49.5   0.0    2.2  2  DEAD            DEAD/DEAH box helicase
    1.3e-11   44.8   0.1    2.6e-05   24.5   0.1    3.1  3  Helicase_C      Helicase conserved C-terminal domain
    2.5e-07   30.5   8.5    2.5e-07   30.5   8.5    3.9  3  PriA_CRR        PriA DNA helicase Cys-rich region (CRR) domai
     0.0021   17.3   0.1     0.0041   16.3   0.1    1.4  1  DAP3            Mitochondrial ribosomal death-associated prot
     0.0027   17.6   0.8     0.0027   17.6   0.8    3.2  3  zinc_ribbon_4   zinc-ribbon domain
  ------ inclusion threshold ------
      0.017   14.6   8.1       0.12   11.9   0.5    3.4  4  TF_Zn_Ribbon    TFIIB zinc-binding
      0.022   14.8   0.7      0.022   14.8   0.7    2.5  2  HypA            Hydrogenase/urease nickel incorporation, meta
      0.023   13.6   0.0      0.043   12.7   0.0    1.3  1  TrwB_AAD_bind   Type IV secretion-system coupling protein DNA
      0.025   14.3   0.0      0.095   12.4   0.0    2.1  2  AAA_30          AAA domain
      0.025   13.8   0.1       0.06   12.5   0.1    1.7  1  PIF1            PIF1-like helicase
      0.033   14.4   0.0       0.21   11.8   0.0    2.2  2  AAA_22          AAA domain
      0.044   13.8   9.3       0.15   12.0   9.3    1.9  1  zinc-ribbons_6  zinc-ribbons
       0.21   10.8   0.0       0.35   10.0   0.0    1.3  1  DUF2075         Uncharacterized conserved protein (DUF2075)
       0.46   10.9   0.0       0.46   10.9   0.0    3.2  3  zf-IS66         zinc-finger binding domain of transposase IS6
        5.1    6.9   5.4        1.1    9.0   0.3    2.3  2  zinc_ribbon_5   zinc-ribbon domain
        5.7    7.1   6.0         27    4.9   6.2    1.9  2  Elf1            Transcription elongation factor Elf1 like
        6.1    7.0  13.7         65    3.7  13.7    2.3  1  DZR             Double zinc ribbon


Domain annotation for each model (and alignments):
>> PriA_3primeBD  3′ DNA-binding domain (3′BD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   9.4e-30   8.4e-27       1      96 []      14     112 ..      14     112 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 9.4e-30
  PriA_3primeBD   1 eVavdlpldrtfdYrvpeel.evkiGsrVlVpfgkrklvGiVvalkeese..veeeklkpieevldeepllteellelaewlaeyylaplgevlka 93 
                    +Va+++p+   fdY++p++l  +kiG rVlV fg r+l+GiV++l + s+  ++++kl+pi++++d+  ++++ell+la wl++yy++plg+v+ +
     EGE27572.1  14 QVALAVPVADFFDYLCPSHLpLPKIGARVLVYFGARRLIGIVIGLIDASDslIAPHKLRPIKQLIDDDAIIDDELLKLASWLSSYYHHPLGDVYCV 109
                    7*******************88899*********************99662366****************************************** PP

  PriA_3primeBD  94 alP 96 
                    +lP
     EGE27572.1 110 MLP 112
                    **9 PP

>> PriA_C  Primosomal protein N C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.3   2.6e-20   2.3e-17       1      94 []     666     759 ..     666     759 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.6e-20
      PriA_C   1 PFsrlalirvsgkdeekveeaaeelaellkealkleeveilgpapapiakikgryryqillksksrkalqkllkellekleklk..k.vrvsiDvDP 94 
                 PFs+ +lir+++   +++++a+ +++ l+ ++   ++  i  p+ ap+ k ++ry++q+l+ +k+r++l+++l+++ +++++l+  k vr+siD+DP
  EGE27572.1 666 PFSHAVLIRAESLHHQQAKDAIIAAKGLIPAN---HPFAINAPIDAPMTKKNNRYQVQMLILAKTRPPLHEFLQTWWPSVQSLPssKaVRMSIDIDP 759
                 9****************************993...5678******************************************9998856********9 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   1.5e-16   1.3e-13       3     170 ..     208     372 ..     206     373 .. 0.78
   2 ?   -2.8   0.0       5.9   5.3e+03      69     111 ..     550     573 ..     517     593 .. 0.47

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 1.5e-16
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka..kek 99 
                 + ++ Q+ a+++++ + +  + + +l+   TG+GKT v+++++ ++l +gk  ++l+lvp++ l+ qt+ +f++ ++ +      k+++ ++ +  ++ 
  EGE27572.1 208 DANDEQQIALDAIKTASDLGQYQGFLLDGVTGSGKTEVYLQAMHHVLDQGK--QVLILVPEIGLTPQTKGRFASRFHANICVLHSKMNDTERLQgwQAC 304
                 56789********9888856777888**********************988..9***********************9944444444444444477777 PP

                 ....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T............TTHHHHHT---SEEEEEESS-S CS
      ResIII 100 dstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk............swreilekfkeavllglTATpe 170
                 +  +++i++ t + +  +              +  +iiiDEaH +++k+             +r++  k+   ++lg TATp 
  EGE27572.1 305 RLGHAQIIIGTRSGILYPF------------ANLGMIIIDEAHDASYKQqdhlryhacdvaMMRALFAKI--PIILG-TATPS 372
                 7777888888887777777............8899************83556644444454555555555..59999.***96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.9
                 HHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEH CS
      ResIII  69 qtleefkkflseaykeigkkvsgdkkkakekdstnkkilvtti 111
                 q ++++++++++                    +tn+  +++ +
  EGE27572.1 550 QKKDAWTQMTKNI-------------------NTNRPAILVGT 573
                 2223333333333...................33333333333 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   4.4e-16     4e-13      13     174 ..     228     377 ..     210     379 .. 0.77
   2 ?    0.9   0.0      0.37   3.3e+02      84     132 ..     552     595 ..     518     624 .. 0.67

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 4.4e-16
                 TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgtpgrldd 110
                 + + +l+ + TGsGKT+++l ++ + +     ++g+++li++P   L+ qt  ++ ++++   + +++ ++++++ + +++ + g ++i++gt + ++ 
  EGE27572.1 228 QYQGFLLDGVTGSGKTEVYLQAMHHVL-----DQGKQVLILVPEIGLTPQTKGRFASRFHANICVLHSKMNDTERLQGWQACRLGhAQIIIGTRSGILY 321
                 336688999***********9999666.....8999**********************9963334446677777777777777556********99998 PP

                 HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS.HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.xxxx RF
        DEAD 111 llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp.kdvk 174
                         + ++ ++++DEa+  + + ++d+++  +  ++    +   ++  +i+ +AT++ +++k
  EGE27572.1 322 -------PFANLGMIIIDEAHDASYK-QQDHLRYHACDVA--MMRALfAKIPIILGTATPSlEQLK 377
                 .......3789*************99.9999999666663..3333335667*******9977665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.37
                 TSSHHHHHHHHH.TTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  84 gvaardqlskld.ngvdivvgtpgrlddllstgklnlsqvrflVlDEadr 132
                 ++a ++  ++++ n++ i+vgt         +g+ ++++v+++V+  ad 
  EGE27572.1 552 KDAWTQMTKNINtNRPAILVGTQMIA-----KGH-HFENVTLVVIANADL 595
                 33334444555436699999998333.....334.599999999988883 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.2e-05      0.01      13      74 ..     254     316 ..     242     328 .. 0.86
   2 ?   -0.8   0.0       2.1   1.9e+03       9      27 ..     436     451 ..     428     489 .. 0.67
   3 !   24.5   0.1   2.9e-08   2.6e-05      41     111 .]     539     623 ..     517     623 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-05
                 TTTTSEEEEEESSHH...HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C  13 eeeggkilifvntid...rlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatd 74 
                   +g+++li v+ i    +      + ++++ +++vlh++++  er++  ++ + g+ +++i t+
  EGE27572.1 254 LDQGKQVLILVPEIGltpQT--KGRFASRFHANICVLHSKMNDTERLQGWQACRLGHAQIIIGTR 316
                 47899**********54333..68898999********************************997 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.1
                 HHHHTTTTSEEEEEESSHH CS
  Helicase_C   9 llkleeeggkilifvntid 27 
                 +l   ++g+++l+f+n++ 
  EGE27572.1 436 CL---AKGEQVLVFLNRRG 451
                 44...78999****99986 PP

  == domain 3  score: 24.5 bits;  conditional E-value: 2.9e-08
                 STEEEESTTSTHHHHH..HHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS........SSH....HHHHHHHTTSSSTT CS
  Helicase_C  41 ikvavlhgelpqnere..eileqfnkgesdvLiatdvaerGidipkvnlVinfdlp........rnv....tsyiqriGRtgRag 111
                 + +  ++ ++ q++    ++ ++ n ++  +L+ t+++++G  +++v+lV++ +++        r++    +++iq +GR+gRa+
  EGE27572.1 539 YPIYQIDKDTMQKKDAwtQMTKNINTNRPAILVGTQMIAKGHHFENVTLVVIANADlgflsadfRSPehtaQRIIQVAGRAGRAK 623
                 555666665555554422444555565556*********************99999777776663325556************95 PP

>> PriA_CRR  PriA DNA helicase Cys-rich region (CRR) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       3.5   3.1e+03       3       8 ..     349     354 ..     339     354 .. 0.62
   2 ?    3.4   0.2     0.088        79      16      25 ..     455     464 ..     452     465 .. 0.86
   3 !   30.5   8.5   2.8e-10   2.5e-07       1      25 [.     467     496 ..     467     497 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.5
    PriA_CRR   3 nCdvsl 8  
                  Cdv++
  EGE27572.1 349 ACDVAM 354
                 466665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.088
    PriA_CRR  16 rLrCHyCgyt 25 
                  L+C  Cg++
  EGE27572.1 455 ILICRSCGHQ 464
                 79*******8 PP

  == domain 3  score: 30.5 bits;  conditional E-value: 2.8e-10
    PriA_CRR   1 CpnCdvsltyHks.....rnrLrCHyCgyt 25 
                 CpnCd++lt+Hk+     +++LrCH+Cgy+
  EGE27572.1 467 CPNCDAHLTVHKKsvqpmHGELRCHHCGYR 496
                 *************44444599********7 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   4.6e-06    0.0041      12      59 ..     218     266 ..     213     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.6e-06
                 HHHTTS-SSS---EEEEE-SSSSSTTTTHHHHHHHGGGS.--EEEEES- CS
        DAP3  12 kklkkadkkkkvkrlvltGekgsGKSvlLlqalayAlek.gwvvlhvpe 59 
                 + +k a++ ++ + ++l+G +gsGK+ + lqa+++ l++ + v++ vpe
  EGE27572.1 218 DAIKTASDLGQYQGFLLDGVTGSGKTEVYLQAMHHVLDQgKQVLILVPE 266
                 566777777888889************************8899999998 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3       2.5   2.3e+03      28      33 ..     458     463 ..     456     465 .. 0.81
   2 !   17.6   0.8     3e-06    0.0027       4      33 ..     466     495 ..     464     496 .. 0.94
   3 ?    0.4   1.2      0.72   6.4e+02       4      10 ..     502     508 ..     501     509 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
  zinc_ribbon_4  28 CskCgh 33 
                    C  Cgh
     EGE27572.1 458 CRSCGH 463
                    889998 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 3e-06
  zinc_ribbon_4   4 tCpsCkakyeiddeklpakgvkvrCskCgh 33 
                     Cp+C a  ++  + +++ ++++rC +Cg 
     EGE27572.1 466 NCPNCDAHLTVHKKSVQPMHGELRCHHCGY 495
                    7***************************95 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.72
  zinc_ribbon_4   4 tCpsCka 10 
                    tCp+C++
     EGE27572.1 502 TCPECHS 508
                    8****95 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       4.3   3.9e+03      26      38 ..     183     195 ..     183     196 .. 0.89
   2 ?   -1.0   0.1       1.4   1.3e+03      20      27 ..     456     463 ..     456     464 .. 0.80
   3 ?   11.9   0.5   0.00013      0.12       3      27 ..     467     495 ..     465     497 .. 0.85
   4 ?    5.8   0.1     0.011        10       2      10 ..     502     510 ..     501     522 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.3
                   SBEEEECCCCCCC CS
  TF_Zn_Ribbon  26 GlVlednsidegp 38 
                   GlV+ d+ i +++
    EGE27572.1 183 GLVITDEHIPPNK 195
                   99******99987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
                   EEESSSSB CS
  TF_Zn_Ribbon  20 lvCtdCGl 27 
                   l+C +CG 
    EGE27572.1 456 LICRSCGH 463
                   58999995 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00013
                   ETTTTCEEC....HEETSTTCEEESSSSB CS
  TF_Zn_Ribbon   3 CPnCgstnl....veDpergelvCtdCGl 27 
                   CPnC    +     + p++gel+C  CG+
    EGE27572.1 467 CPNCDAHLTvhkkSVQPMHGELRCHHCGY 495
                   *****98764666666************6 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.011
                   EETTTTCEE CS
  TF_Zn_Ribbon   2 kCPnCgstn 10 
                   +CP+C+s+n
    EGE27572.1 502 TCPECHSPN 510
                   7******98 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   2.5       0.1        94      68      95 ..     453     473 ..     423     480 .. 0.71
   2 ?   14.8   0.7   2.4e-05     0.022      64     100 ..     481     514 ..     473     526 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.1
                 --EEEETTTS-EEECHHHHHS-TTTSSS CS
        HypA  68 pvkvrCreCgkefeleekalrCpkCgsa 95 
                    + Cr+Cg++        +Cp+C+++
  EGE27572.1 453 APILICRSCGHQA-------NCPNCDAH 473
                 56789*****544.......5****986 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.4e-05
                 EEEE--EEEETTTS-EEECHHHHHS-TTTSSS-EEEE CS
        HypA  64 ieevpvkvrCreCgkefeleekalrCpkCgsadveiv 100
                 ++ ++ ++rC++Cg+++++    ++Cp+C+s +++  
  EGE27572.1 481 VQPMHGELRCHHCGYRTSIP---TTCPECHSPNMDSF 514
                 56678899*********987...36******998754 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.8e-05     0.043      16      50 ..     230     264 ..     217     288 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.8e-05
  TrwB_AAD_bind  16 qhilivGttGsGKtqalekllrairargdraivlD 50 
                    q +l+ G tGsGKt++  + ++++  +g+++++l 
     EGE27572.1 230 QGFLLDGVTGSGKTEVYLQAMHHVLDQGKQVLILV 264
                    7899**************************99984 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011     0.095       3     114 ..     210     351 ..     208     360 .. 0.65
   2 ?   -2.7   0.0       4.5   4.1e+03     139     163 ..     628     652 ..     622     664 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
      AAA_30   3 naeQaaavealltsgdrva....vltGpAGtGKttalkalreaweaaggrviglApt........gkaAkvLaeelgi...eastiakllkrlk..... 81 
                 n+eQ+ a++a+ t +d+ +    +l G+ G+GKt +  ++ +++ ++g++v++l p+        g+ A +  +++ +   + + +++l  +++     
  EGE27572.1 210 NDEQQIALDAIKTASDLGQyqgfLLDGVTGSGKTEVYLQAMHHVLDQGKQVLILVPEigltpqtkGRFASRFHANICVlhsKMNDTERLQGWQAcrlgh 308
                 7888888888888776433223389**********9888888888888888766654100000113344444443333444444444554444488899 PP

      AAA_30  82 .............grarlepgtllivDEagmvdtkqlaallkaaek 114
                                  +++  ++i+DEa  ++ kq ++l  +a +
  EGE27572.1 309 aqiiigtrsgilyP---FANLGMIIIDEAHDASYKQQDHLRYHACD 351
                 99999999875542...44458999999999999999888877766 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.5
      AAA_30 139 dlveaagigtaeLtevvRqkeseer 163
                  l+++ +++ + Lt++vRq  ++++
  EGE27572.1 628 VLIQTLQPDNTLLTQLVRQGYHAFA 652
                 4455557899999*****9654443 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.7e-05      0.06       3      61 ..     210     269 ..     208     368 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.7e-05
                 -HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEE.EEESSHH CS
        PIF1   3 neeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrsegkivl.avAssGv 61 
                 n+eQ+ ++dai  a    + + f ++G  G+gKt ++ + ++ +  +gk+vl  v   G+
  EGE27572.1 210 NDEQQIALDAIKTASDLGQYQGFLLDGVTGSGKTEVYLQAMHHVLDQGKQVLiLVPEIGL 269
                 89*********88888899999************99977666666666666514555565 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00024      0.21       9     109 ..     233     345 ..     227     379 .. 0.75
   2 ?   -0.9   0.0         2   1.8e+03      15     100 ..     515     593 ..     514     611 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00024
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsst..sskdllrellralglelka.....erlsseell.ealeqalrarav....... 91 
                 ++ G +G+GKT ++ + ++    +      +++v+ +v   ++t  +   +++++  ++ + +++     + +  ++++  + +  + +r+        
  EGE27572.1 233 LLDGVTGSGKTEVYLQAMHHVLDQ------GKQVLiLVPEIGLTpqTKGRFASRFHANICVLHSKmndteRLQGWQACRlGHAQIIIGTRSGilypfan 325
                 688*********998877776433......344334444444446668888888888888888887778888888888877777777777779****** PP

      AAA_22  92 ielliiDEaqhlr..seeal 109
                  +++iiDEa+  +  ++++l
  EGE27572.1 326 LGMIIIDEAHDASykQQDHL 345
                 **********9844324444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
      AAA_22  15 GtGKTtllrrlleqldeeakaee..erpevv..fvtlpsst.sskdllrellralglelkaerlsseell.ealeqalraravielliiDEa 100
                 G+G T+l+++l+  +      +    +       +++ ++t   kd ++++ ++++       ++   l+ +++    ++   + l++i +a
  EGE27572.1 515 GAGTTRLVEQLHALFA-----NPqvSHT--TypIYQIDKDTmQKKDAWTQMTKNINT------NRPAILVgTQMIAKGHHFENVTLVVIANA 593
                 6666777777766662.....1222222..134777777776666777777777773......34445555555555555555555555555 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   9.3   0.00017      0.15       2      38 ..     466     509 ..     456     518 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
                     --SSS-S--E.E-S......SEEE-TTT--EEEEEEE-SSS-S- CS
  zinc-ribbons_6   2 kCpeCqqele.krg......eqyhCeaCqedlkkealCpeCeqe 38 
                     +Cp+C+++l+ +++       +++C++C  + +  ++CpeC+++
      EGE27572.1 466 NCPNCDAHLTvHKKsvqpmhGELRCHHCGYRTSIPTTCPECHSP 509
                     7*******995444899*999********************986 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0004      0.35       4     107 ..     232     344 ..     230     366 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0004
     DUF2075   4 vlVtGvaGtGKtvvllnllael....edde...........eertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeep 87 
                 +l  Gv+G+GKt v l++++ +    +  +            + +  ++s+ h+ + vl ++++ +e+ +  ++   + +++i  ++         +  
  EGE27572.1 232 FLLDGVTGSGKTEVYLQAMHHVldqgK--QvlilvpeigltPQTKGRFASRFHANICVLHSKMNDTERLQGWQACRLGHAQIIIGTR----SGILYPFA 324
                 6789*****************966540..1455555555557888889999999999999999999977777777777777777777....67778999 PP

     DUF2075  88 kedvvivDEAhrlltksdqa 107
                 ++ ++i+DEAh +  k++ +
  EGE27572.1 325 NLGMIIIDEAHDASYKQQDH 344
                 ***********998855543 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3       5.5   4.9e+03      38      46 .]     454     462 ..     452     462 .. 0.77
   2 ?   -0.4   0.3       1.8   1.6e+03       3      10 ..     466     474 ..     464     481 .. 0.72
   3 ?   10.9   0.0   0.00051      0.46       1      40 [.     500     542 ..     500     543 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5.5
     zf-IS66  38 pkyaCpcCe 46 
                 p + C++C+
  EGE27572.1 454 PILICRSCG 462
                 677899996 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.8
     zf-IS66   3 tCpcCGg.l 10 
                 +Cp+C + l
  EGE27572.1 466 NCPNCDAhL 474
                 699998744 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00051
     zf-IS66   1 prtCpcCGg.llkpigedrvr..eeldipPakfrViehirpky 40 
                 p+tCp+C++  ++  g   +r  e+l    a + V ++ +p y
  EGE27572.1 500 PTTCPECHSpNMDSFGAGTTRlvEQLHALFANPQVSHTTYPIY 542
                 79*******66******988899***99999999999999988 PP

>> zinc_ribbon_5  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0013       1.1       4      32 ..     466     494 ..     464     495 .. 0.95
   2 ?   -0.9   0.8       1.7   1.5e+03       3      10 ..     501     508 ..     499     509 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0013
  zinc_ribbon_5   4 rCpdCdtkFklvdsklKksgkkVrCakCa 32 
                     Cp+Cd    +    +    +  rC +C+
     EGE27572.1 466 NCPNCDAHLTVHKKSVQPMHGELRCHHCG 494
                    6***************************8 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.7
  zinc_ribbon_5   3 irCpdCdt 10 
                    + Cp+C +
     EGE27572.1 501 TTCPECHS 508
                    78****87 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2       1.2     1e+03      35      57 ..     445     467 ..     435     468 .. 0.70
   2 ?    4.9   6.2     0.031        27      21      57 ..     464     499 ..     457     509 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.2
        Elf1  35 vkldkkekiaevsCkvCgesfet 57 
                 v l+++    ++ C++Cg ++++
  EGE27572.1 445 VFLNRRGYAPILICRSCGHQANC 467
                 55555555667899999998876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.031
        Elf1  21 kFdCpfCnheksvevkldkkekiaevsCkvCgesfet 57 
                 + +Cp+C+++ +v+ k   +   +e++C+ Cg ++++
  EGE27572.1 464 QANCPNCDAHLTVHKKSV-QPMHGELRCHHCGYRTSI 499
                 558*******77765544.4469*********98775 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  13.7     0.072        65       1      48 [.     458     506 ..     453     514 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.072
         DZR   1 CpqCgeelppdarfCseCgtklkavaa.......edrCpsCgekvdpearfCpeC 48 
                 C +Cg++       C++C ++l   ++       e rC +Cg+ ++   ++CpeC
  EGE27572.1 458 CRSCGHQ-----ANCPNCDAHLTVHKKsvqpmhgELRCHHCGYRTSIP-TTCPEC 506
                 6666666.....679999999875555899999988888888886665.578888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.40
# Mc/sec: 5655.09
//
Query:       EGE27573.1  [L=301]
Description: dyp-type peroxidase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-82  275.6   0.0    6.6e-82  275.1   0.0    1.2  1  Dyp_perox  Dyp-type peroxidase family


Domain annotation for each model (and alignments):
>> Dyp_perox  Dyp-type peroxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.1   0.0   3.7e-86   6.6e-82       1     326 [.       6     297 ..       6     298 .. 0.94

  Alignments for each domain:
  == domain 1  score: 275.1 bits;  conditional E-value: 3.7e-86
                 BSSSSS-C-SEEEEEEEEE-TTCHHHHHHHHHHHHHHHHHHHHCCCCSCSSHCTCCCTHSTTTT-EEEEEEEHHHHHHTTSCGGS-TTCS----ETTTT CS
   Dyp_perox   1 qagiltplqaaaifvaldvkakdkakleallrkltarverLtagekappadtgealkarkpdsrLtvtvgiGsslfdrlglkekrpkeLkplpelkndk 99 
                 q++i++++++a if++ d+ ++++a+++++ r+  +++++L+               a++ +++L++t+g+G ++++r+g + k++ ++kp++ l+n+ 
  EGE27573.1   6 QSAIIPDHCRAGIFMEGDFITNNTATIADACRRALHTLNELQ---------------AKFTGESLGLTIGFGAQAWQRFGYT-KEGGQIKPFRPLGNG- 87 
                 899******************999999999999999999977...............2334689******************.***************. PP

                 EEGGGS--SEEEEEEESSHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEHCTSTTCB-TTSSBSSTTS--TCHHHHHHHS-CSSSGGGTT-EEEEEEEEE CS
   Dyp_perox 100 ldapstdgDlliqiraeredvafealrailkafgdavevrdevkGFrsssgkvtarnLlGFvDGTeNpkgeeakeavvlikdedewaagGsYvvvrkir 198
                   ap+t++D++++i++ r+d++f+++++++  f+d v++++e++GFr+    v++r L GFvDGTeNp+++     v+ i+d+  ++agGsYv+++k+r
  EGE27573.1  88 -LAPATQHDVMFHIQSMRHDINFSLAKELVAIFKDIVQIQSETHGFRW----VENRGLEGFVDGTENPQDDAVSG-VAAIADG--DDAGGSYVLLQKYR 178
                 .9**********************************************....****************9987777.5999***..9************* PP

                 E-HHHHTTS-HHHHHHHHTB-TTT--BTTTTSTTSTTTGSSS-TTSHHHHHSGESTTTEC--EE--EEEEEEE-TTSSCEEEEEEEEEESSCHHCHHHH CS
   Dyp_perox 199 hdleaWdrlslkeQedviGRrKedgaeldddkeaddseekvipkdsHvrlaklkedgkglkilRralsygeGldkvgkldaGllFiaYqrtlenteqml 297
                 hdl++Wd+l++ +Qe+ iGR K d++e+d++         ++ +dsH+++++lkedgk l+++Rr+l++g+    v  +++Gl++iaY+++l+n+e++l
  EGE27573.1 179 HDLNKWDKLPVCDQENSIGRSKVDNIEFDKA---------KRLSDSHLGRTNLKEDGKTLEVVRRSLPFGT----VT-GEHGLMYIAYAARLWNIEAQL 263
                 ****************************999.........99*****************************....43.69******************* PP

                 HHHH....SCB-GGG.GCEEEEEEEEEEE-BHHH CS
   Dyp_perox 298 qrml....gktdaLl.efikavtgglFfapsgvk 326
                 ++m+    gk d Ll ++++av+g++++aps+++
  EGE27573.1 264 LSMFgetdGKIDLLLkHVSTAVSGAYYYAPSVER 297
                 ****888888888775899************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2386.92
//
Query:       EGE27574.1  [L=126]
Description: endoribonuclease L-PSP [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-36  124.8   0.1    1.9e-36  124.7   0.1    1.0  1  Ribonuc_L-PSP    Endoribonuclease L-PSP
  ------ inclusion threshold ------
      0.032   14.4   0.3      0.093   12.9   0.3    1.7  1  YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endori


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   0.1   2.2e-40   1.9e-36       2     119 ..       9     123 ..       8     125 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 2.2e-40
                    TTSTTTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS-- CS
  Ribonuc_L-PSP   2 eaapaaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaP 97 
                    ++apaa++ Ysqavk+g+++y+sGql+ldp+t++l ++ +++q++qa++nl+a+ +aag slsd Vk +v l+d++dfa++nev +  +++++  P
     EGE27574.1   9 DDAPAAVGTYSQAVKVGDTIYISGQLGLDPKTMTL-KEGFKAQAEQAMDNLQAIAKAAGGSLSDAVKFNVSLTDLSDFATLNEVFDACLNAPY--P 101
                    689*******************************9.999*****************************************************7..* PP

                    EEEEEE-SBSGGG-SEEEEEEE CS
  Ribonuc_L-PSP  98 arsaveVaaLpkgakvEIeaia 119
                    ar+av+VaaLpkg  vEIeai 
     EGE27574.1 102 ARAAVQVAALPKGGVVEIEAIL 123
                    ********************97 PP

>> YjgF_endoribonc  YjgF/chorismate_mutase-like, putative endoribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3     1e-05     0.093      13      77 ..      10      64 ..       5      99 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
                     -----SSSS-SEEEETTEEEE--B--EETTEE--BS-BTTTB-HHHHHHHHHHHHHHHHHHHHHH CS
  YjgF_endoribonc 13 kvaaalGayepyaivasflttsfqlpylqekllyvGllGddvsvseGiaaarlaalnalaqlkea 77
                     +++aa+G+y    +v++ +  s+ql  + +++          + +eG+ a    a++ l  +++a
       EGE27574.1 10 DAPAAVGTYSQAVKVGDTIYISGQLGLDPKTM----------TLKEGFKAQAEQAMDNLQAIAKA 64
                     57899999999999999999999998877665..........44444444443344333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1025.20
//
Query:       EGE27575.1  [L=59]
Description: hypothetical protein EA1_01747 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 496.32
//
Query:       EGE27576.1  [L=728]
Description: metal dependent phosphohydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-39  133.4   0.1    1.3e-38  132.2   0.1    1.5  1  HD_4      HD domain
    5.9e-11   42.2   0.0    1.3e-10   41.1   0.0    1.6  1  TGS       TGS domain
    1.1e-08   35.3   0.2    3.4e-08   33.7   0.1    1.9  2  HD        HD domain
  ------ inclusion threshold ------
      0.039   14.3   0.0        4.5    7.7   0.0    3.4  3  MKT1_N    Temperature dependent protein affecting M2 dsRNA re
      0.068   13.4   0.0       0.34   11.2   0.0    2.1  2  Cas_Csa5  CRISPR-associated protein (Cas_Csa5)
      0.097   13.3   0.6       0.56   10.8   0.1    2.3  2  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.1   4.2e-42   1.3e-38       1     151 [.      43     187 ..      43     191 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 4.2e-42
        HD_4   1 AlelaaelhagqrkltgepllahalevAailaelgldaetviAalLhdvveda.lsleeirerfGeevarLvegvsklkrlqkvaaadeaeekaeqven 98 
                 A+ + + +h ++++++gep+++h+++vA+ila+ +ld +t++Aa+Lhd++ed+  ++e ++++fG+ va+Lv+gv+klk            ++++q+ +
  EGE27576.1  43 ACHFGDVAHIKDKRKSGEPYITHPIAVAEILAGFRLDRDTIVAAILHDTIEDTeVTDEMVTQEFGQMVAQLVDGVTKLKSSGMS-------KQQSQAAT 134
                 777788889999*****************************************777799**********************999.......9******* PP

        HD_4  99 lRkmLlAmveDirvvliklAdrlqtlrslaaakeekrrdvaretldiyaplAn 151
                 + k+L A  +D+rv++ikl drl+++ +l+a +eek+++ a+etld y p+A+
  EGE27576.1 135 FHKILTATLSDPRVLIIKLSDRLHNMSTLDAVSEEKQKRTAKETLDFYIPFAR 187
                 ***************************************************97 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   4.5e-14   1.3e-10       3      58 ..     402     457 ..     400     459 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 4.5e-14
                 EEETTSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEE CS
         TGS   3 vytPdGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveI 58 
                  y P+G++ +lprg+t+ DfAy+++  +++ +++A +n ++  l  vL dgd+v+I
  EGE27576.1 402 CYSPKGRAYELPRGSTALDFAYAVGPAIGNIATGADINHKHGKLGLVLADGDIVSI 457
                 589***************************************************99 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   1.2e-11   3.4e-08       1     122 []      62     160 ..      62     160 .. 0.87
   2 ?   -2.7   0.0       2.2   6.6e+03      70      93 ..     375     400 ..     370     419 .. 0.70

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.2e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH CS
          HD   1 rleHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgldledvaklirehheswegkkrpr 99 
                 +++H+++Va++++ +  d++       + +aa+lHD++++++  + e  ++ef++++a  ++g+++l+ ++ ++       ++++  h           
  EGE27576.1  62 YITHPIAVAEILAGFRLDRD-------TIVAAILHDTIEDTEV-TDEMVTQEFGQMVAQLVDGVTKLKSSGMSK-----QQSQAATFHKILTA------ 141
                 689*****************.......**************55.34444777******************9999.....56777777777776...... PP

                 HHHCCTSCHHHHHHHHHHHHHHH CS
          HD 100 glaerqlslearivklaDrlaam 122
                        +++++i+kl Drl++m
  EGE27576.1 142 ----TLSDPRVLIIKLSDRLHNM 160
                 ....589**************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
                 HHHHHHHH..HHHHHHHHHTTCCHHH CS
          HD  70 vekrlgld..ledvaklirehheswe 93 
                 ++k +g+d  + ++ +li++ he++ 
  EGE27576.1 375 AGKAEGDDahVVIIEELISYLHERKI 400
                 55555555667778888888888776 PP

>> MKT1_N  Temperature dependent protein affecting M2 dsRNA replication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.34     1e+03      29      61 ..      83     115 ..      80     142 .. 0.82
   2 ?    1.3   0.0      0.15   4.5e+02      22      60 ..     141     179 ..     128     199 .. 0.82
   3 ?    7.7   0.0    0.0015       4.5       3      31 ..     523     551 ..     522     567 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.34
      MKT1_N  29 ilnaltsgelieeppldggdseeYrklvtdllt 61 
                 i+ a+ + +++++  +d+ +++e+ ++v +l  
  EGE27576.1  83 IVAAILHDTIEDTEVTDEMVTQEFGQMVAQLVD 115
                 778999999999999999*******99999875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.15
      MKT1_N  22 rGligprilnaltsgelieeppldggdseeYrklvtdll 60 
                   l  pr+l +  s  l+   +ld+++ e++++  +++l
  EGE27576.1 141 ATLSDPRVLIIKLSDRLHNMSTLDAVSEEKQKRTAKETL 179
                 4456799999999999*****************999887 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0015
      MKT1_N   3 DlheylgqrLPeelyyylsrGligpriln 31 
                 D+ +  g   P+el++ ls+G++ p+++ 
  EGE27576.1 523 DILKWRGINTPDELFMQLSTGMLLPQLVV 551
                 6666668889**************99865 PP

>> Cas_Csa5  CRISPR-associated protein (Cas_Csa5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.7   4.9e+03      66      98 ..     466     503 ..     437     510 .. 0.64
   2 ?   11.2   0.0   0.00012      0.34      12      49 ..     651     687 ..     645     714 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.7
    Cas_Csa5  66 kyevvGylpsde...dvedFlelverD..iyvarkvga 98 
                 + e +G++++++   ++ +Fl+ + +D  i + +++  
  EGE27576.1 466 RAEWLGFVATNKarnEILKFLKHLPEDqkIHYGKQALD 503
                 45666777776433378888888876644566666555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00012
    Cas_Csa5  12 RianaLskeavakvlydaqRivqmglergeiksdtvki 49 
                 Ri   L++e + +v+y++ R+++ g+e+  ik+dt+  
  EGE27576.1 651 RIYASLNEEQISQVIYEM-RVLNIGVEQTHIKTDTKSD 687
                 88899***********96.9*************99854 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.82   2.5e+03       7      26 ..     345     364 ..     344     373 .. 0.87
   2 ?   10.8   0.1   0.00019      0.56       5      72 ..     646     717 ..     643     724 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.82
       ACT_4   7 vrleveaedrkglLaditqv 26 
                 +rl ++++dr g+ ++++q+
  EGE27576.1 345 ARLGIISNDRAGVSQSVIQA 364
                 789999******99999876 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00019
       ACT_4   5 ytvrleveaedrkglLaditqviseekani..vsvnaktrkk..dglaeikitveVkdvehLsrviakLrai 72 
                 +++ l+++a+ +   +++++      ++ +  ++++++t+++  +++ + ++++ V++++hL++ i+kLr +
  EGE27576.1 646 FPAMLRIYASLNEEQISQVIYEMRVLNIGVeqTHIKTDTKSDqsSKVGTTTLHIVVRSRSHLAEGIEKLRTL 717
                 666666666544444444444444444444114555555444668999*********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.37
# Mc/sec: 5967.96
//
Query:       EGE27577.1  [L=90]
Description: DNA-directed RNA polymerase subunit omega [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-16   60.6   0.0    1.5e-16   60.1   0.0    1.2  1  RNA_pol_Rpb6  RNA polymerase Rpb6


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb6  RNA polymerase Rpb6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   8.2e-21   1.5e-16       1      47 [.       8      59 ..       8      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 8.2e-21
                  HHTTSS--HHHHHHHHHHHHHHH..........HTSS-SSSSTTCHHHHTT-S CS
  RNA_pol_Rpb6  1 rltskvltrYelvriaakRArQieeg..e....sletqkpvviAlrEiaegki 47
                  +++++v++r+el+++a+kRArQ+++g  e      +++kp+v AlrEi++g +
    EGE27577.1  8 DCLENVDNRFELILVASKRARQLANGkvEptvaV-DNDKPTVLALREISAGHV 59
                  7**********************77645466532.589*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 799.39
//
Query:       EGE27578.1  [L=209]
Description: guanylate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-51  172.3   0.0    9.4e-51  172.1   0.0    1.0  1  Guanylate_kin  Guanylate kinase
    5.2e-05   23.3   0.0    6.4e-05   23.0   0.0    1.5  1  MMR_HSR1       50S ribosome-binding GTPase
    0.00036   21.0   3.0    0.00098   19.5   3.0    1.7  1  AAA_16         AAA ATPase domain
     0.0016   18.6   0.0     0.0054   16.9   0.0    1.9  1  AAA_33         AAA domain
     0.0016   19.0   0.1     0.0064   17.0   0.1    2.0  2  AAA_18         AAA domain
  ------ inclusion threshold ------
      0.034   13.9   0.1       0.08   12.6   0.1    1.8  1  AAA_24         AAA domain
      0.053   13.4   0.4       0.13   12.2   0.1    1.8  2  MobB           Molybdopterin guanine dinucleotide synthesis p
      0.057   13.7   0.2        0.1   12.8   0.0    1.7  2  AAA_22         AAA domain
      0.088   12.6   0.1       0.93    9.2   0.0    2.0  2  IPPT           IPP transferase
        0.1   12.9   1.7       0.31   11.4   0.4    2.2  2  AAA_19         AAA domain
       0.12   12.0   1.2       0.18   11.4   0.5    1.7  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
       0.27   10.8   1.4       0.54    9.8   0.1    1.9  2  AAA_25         AAA domain


Domain annotation for each model (and alignments):
>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   0.0   6.3e-54   9.4e-51       3     181 ..       4     182 ..       2     183 .. 0.96

  Alignments for each domain:
  == domain 1  score: 172.1 bits;  conditional E-value: 6.3e-54
                    SEEEEESTTTSSHHHHHHHHHHHSTTTEEE--EEESS---TTS-TTTSEEE--HHHHHHHHHTTTEEEEEEETTEEEEEEHHHHHHHHHTTSEEEE CS
  Guanylate_kin   3 rpvvlvgpsgaGksslkkaLlselpekfgvsvshtTrdprkgevdGkdYyFvskeemekdiskneflEaaefsgnlygtsveaieevlekgkiviL 98 
                    ++ ++ ++sg+Gk sl k+Ll+  +    vs+shtTr+pr+ge++G +Y+F+ + ++++ i++ eflE+a++ +++ygts++a+   l++g +viL
     EGE27578.1   4 TLFIITAASGTGKTSLVKELLKCTKG-LCVSISHTTRQPRPGEINGIHYHFIDTASFQSLIQASEFLEYAQVFDHYYGTSKQAVIDLLAQGIDVIL 98 
                    5689*****************98764.569****************************************************************** PP

                    E--CHHHHHHHHTTTTEEEEEEEESSHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHGGG.CSSEEEEESSHHHHHHHHHHHHHH CS
  Guanylate_kin  99 DvdiqavkqlrkaelspiivFikppslkelqrrlksrgkeqeeklakrlaaaekelqey.efdvvivnddleealkklkellea 181
                     +d+q++ q++++  +++++Fi pp+ ++l +rl +rg++++e+++krla +  e+++y  fd+v+ nd +e al +l++++++
     EGE27578.1  99 EIDWQGALQVKAQFDQAVMIFILPPTRQALAERLSNRGQDSQEVIKKRLAGSLDEIRQYdQFDYVVINDRFEMALDDLQTIIKS 182
                    ***********************************************************66********************986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   4.3e-08   6.4e-05       8      69 ..      12      74 ..       6     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4.3e-08
                TTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS...HHHHHHHHHHH CS
    MMR_HSR1  8 pNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie...gaseekglgka 69
                + +GK++L++ l++  k    ++  tTr+++ g+++  g +++++Dt+ + +   +ase  + ++ 
  EGE27578.1 12 SGTGKTSLVKELLKCtKGLCVSISHTTRQPRPGEIN--GIHYHFIDTASF-QsliQASEFLEYAQV 74
                679***********868999***************9..9*********94.322223333333322 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   3.0   6.6e-07   0.00098      26     158 ..       5     201 ..       2     207 .. 0.50

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 6.6e-07
      AAA_16  26 lvllsGesGvGKsslvrellralekdggif.lrgkcdql.esa....ipysalaqalareellrqllde............aesaeleawrekleeala 106
                 l +++ +sG+GK+slv+ell+  +++g  + ++ +++q  + +    i+y ++++++++ +l+++ +              +++a  +  ++ ++  l+
  EGE27578.1   5 LFIITAASGTGKTSLVKELLK--CTKGLCVsISHTTRQPrP-GeingIHY-HFIDTASFQSLIQASEFLeyaqvfdhyygtSKQAVIDLLAQGIDVILE 99 
                 67899***************8..666322224444444420.13334443.333333333333333322222222223333444455555555555555 PP

      AAA_16 107 ........................avpelagaea.......srllellkrll.allsrder..............plvlvlDdlq..........wade 149
                                              + a+a       ++  e++k+ l   l    +               + + lDdlq           a++
  EGE27578.1 100 idwqgalqvkaqfdqavmifilppT----RQALAerlsnrgQDSQEVIKKRLaGSLD---EirqydqfdyvvindRFEMALDDLQtiikshrltlHAQQ 191
                 7777777777778888888855441....4444433445553333333333322222...122455566666666688888888877777755554443 PP

      AAA_16 150 aslql.laaL 158
                 a +++ +aaL
  EGE27578.1 192 ARHAAlIAAL 201
                 3333335555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.6e-06    0.0054       7     122 ..      11     139 ..       5     159 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.6e-06
      AAA_33   7 lpGsGKstlaerllkklgavllssdt.................lrrrlfgtdqqskt..............dytrvldrlyqilnelarkalsagrnvi 74 
                 ++G+GK+ l+++llk +++  +s                    +                           +y++v d+ y++ ++ + + l++g++vi
  EGE27578.1  11 ASGTGKTSLVKELLKCTKGLCVSISHttrqprpgeingihyhfI------------DtasfqsliqaseflEYAQVFDHYYGTSKQAVIDLLAQGIDVI 97 
                 69************988855555555226666665555555432............03333344444456699***********99999********** PP

      AAA_33  75 ldatnlsrrerarflklarrlgvpvrivvvetdeetlkeRlakRaang 122
                 l        +++  l++  +++ +v i ++ + ++ l+eRl  R +++
  EGE27578.1  98 LE------IDWQGALQVKAQFDQAVMIFILPPTRQALAERLSNRGQDS 139
                 95......5677777777777777778888888888888888888764 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.3e-06    0.0064       2     119 ..       7     141 ..       7     158 .. 0.62
   2 ?    2.2   0.0      0.17   2.5e+02      18      35 ..     128     146 ..     126     194 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.3e-06
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf..............gvnlrdvakenglllevdpe.aldeskrldedkldklldaleenss............... 69 
                 ++t ++G+GKt+l keL k + g+                                +   ++  + +  + l ++++ le +                 
  EGE27578.1   7 IITAASGTGKTSLVKELLKCTkGLcvsishttrqprpgE----------------INGiHYHFIDTASFQSLIQASEFLEYAQVfdhyygtskqavidl 89 
                 69999************5544333444455555555552................44432333333333333333333333222444444444444445 PP

      AAA_18  70 .aleegknlvidghlaeleseaakdikk.vvLtaspeelleRlekRgyeeak 119
                  a++    l id++ a  +++++ ++++ ++L    + l+eRl++Rg+ + +
  EGE27578.1  90 lAQGIDVILEIDWQGALQVKAQFDQAVMiFILPPTRQALAERLSNRGQDSQE 141
                 555666777899999999999999999755555555***********87765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.17
      AAA_18  18 Lskrlgf.gvnlrdvaken 35 
                 L++rl + g+ +++v+k++
  EGE27578.1 128 LAERLSNrGQDSQEVIKKR 146
                 3333322155555555543 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   5.4e-05      0.08       6      74 ..       7      90 ..       3     194 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.4e-05
      AAA_24  6 liyGpsgiGKTtlakel..gpkplfidtekGlksldadkfpdie.......swedfldevvel......aaeladyktlviDti 74
                +i++ sg+GKT+l+kel    k l++ + + +++  + +++ i+       s++ ++++ ++l      +  + + k  viD +
  EGE27578.1  7 IITAASGTGKTSLVKELlkCTKGLCVSISHTTRQPRPGEINGIHyhfidtaSFQSLIQASEFLeyaqvfDHYYGTSKQAVIDLL 90
                7999*************8877888888888887777777777777777788666666655555554555555555555555555 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   8.5e-05      0.13       2      30 ..       6      34 ..       5      46 .. 0.82
   2 ?   -1.7   0.0       1.7   2.5e+03      85      85 ..     154     154 ..     115     199 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.5e-05
        MobB  2 lgivgksgsGKTtLleklipelkarglrv 30
                + i++ sg+GKT+L+++l+++ k   +++
  EGE27578.1  6 FIITAASGTGKTSLVKELLKCTKGLCVSI 34
                56899**************9877655554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
        MobB  85 l 85 
                 +
  EGE27578.1 154 I 154
                 2 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     7e-05       0.1       6      27 ..       4      25 ..       1      93 [. 0.90
   2 ?   -2.0   0.0       2.7     4e+03      80      89 ..     145     154 ..     121     198 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlle 27
                ++ ++t+ sGtGKT l+++ll+
  EGE27578.1  4 TLFIITAASGTGKTSLVKELLK 25
                6789***************986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.7
      AAA_22  80 ealeqalrar 89 
                 ++l+  l++ 
  EGE27578.1 145 KRLAGSLDEI 154
                 4433333333 PP

>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00062      0.93      10      45 ..      38      73 ..      33      88 .. 0.89
   2 ?    1.2   0.0      0.18   2.7e+02     138     163 ..     112     138 ..      91     191 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00062
                TT---HHHHTTS-EESSS-B-TTS---HHHHHHHHH CS
        IPPT 10 TakptaeeragvphhlidildpdeeysvadFqkdal 45
                T +p + e +g+++h+id  + +  +++++F + a+
  EGE27578.1 38 TRQPRPGEINGIHYHFIDTASFQSLIQASEFLEYAQ 73
                89999**************************99987 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.18
                 HHE.CEEEEEECSHHHHHHHHHHHHHH CS
        IPPT 138 lse.llviglesdreelyeridkRvde 163
                 + + +++++l   r+ l er+++R ++
  EGE27578.1 112 FDQaVMIFILPPTRQALAERLSNRGQD 138
                 334245555546999999999998543 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   0.00021      0.31      11      34 ..       4      27 ..       1      37 [. 0.86
   2 ?    0.4   0.0      0.51   7.6e+02      41      62 ..     114     136 ..     100     199 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
      AAA_19 11 kvllvtaGpGtGKTrvlkhivall 34
                +++++ta  GtGKT ++k+ +++ 
  EGE27578.1  4 TLFIITAASGTGKTSLVKELLKCT 27
                6789*************9998875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.51
      AAA_19  41 kpeeillvaftgrA.akelrerl 62 
                 ++  i ++ +t++A a++l++r 
  EGE27578.1 114 QAVMIFILPPTRQAlAERLSNRG 136
                 45667777777777445555544 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   0.00012      0.18       3      29 ..       6      32 ..       4      35 .. 0.88
   2 ?   -2.3   0.0         2   2.9e+03      31      34 ..     163     166 ..     129     184 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                EEEEESTTCCHHHHHHHHHCT--SS-E CS
        cobW  3 tvltGflGsGKTtLlnhllenraglkl 29
                +++t   G+GKT+L+++ll++++gl +
  EGE27578.1  6 FIITAASGTGKTSLVKELLKCTKGLCV 32
                689999***************998755 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2
                 EEES CS
        cobW  31 vivN 34 
                 v++N
  EGE27578.1 163 VVIN 166
                 3444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00036      0.54      32      54 ..       2      24 ..       1      45 [. 0.81
   2 ?   -0.3   0.1      0.46   6.8e+02      81     110 ..     138     178 ..     123     204 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00036
      AAA_25 32 agelallaGapgtGKttlaldla 54
                ag+l ++++a+gtGKt l+ +l 
  EGE27578.1  2 AGTLFIITAASGTGKTSLVKELL 24
                6999************9986664 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.46
      AAA_25  81 dsedelrrRlravgeal...........rddarllvldlag 110
                 ds++ +++Rl+  + ++           +d+ + ++ dl++
  EGE27578.1 138 DSQEVIKKRLAGSLDEIrqydqfdyvviNDRFEMALDDLQT 178
                 66777777777777666444444444443333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      738  (0.0411624); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1469.87
//
Query:       EGE27579.1  [L=313]
Description: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-90  301.7   0.0    4.3e-90  301.5   0.0    1.0  1  LYTB      LytB protein
  ------ inclusion threshold ------
        0.1   12.9   0.1        0.2   11.9   0.1    1.4  1  DUF1363   Protein of unknown function (DUF1363)


Domain annotation for each model (and alignments):
>> LYTB  LytB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.5   0.0   4.8e-94   4.3e-90       1     263 [.       3     283 ..       3     284 .. 0.95

  Alignments for each domain:
  == domain 1  score: 301.5 bits;  conditional E-value: 4.8e-94
                 EEE-TT-SS-HHHHHHHHHHHHHHCCC-S.EEECS-SSS-HHHHHHHHHCTEEEESSSST.....EEEE-TT---HHHHHHHHHTTEEEEE---HHHHH CS
        LYTB   1 illaksaGfCfGVerAieiaeealeekke.vyvlgeivHNeqvverLeekgvkfieelee.....vviirAhGvskeveeelkekglevvDatCplVkk 93 
                 illa+++GfC+GV+rAi+i++eal++++  +yv++e+vHN+ vve+L+++g+ f+eel+e     +vi++AhGvsk+ve+e+k+++l+v+DatCplV+k
  EGE27579.1   3 ILLANPRGFCAGVDRAIAIVNEALRRFNPpIYVRHEVVHNKFVVEDLARRGAVFVEELDEvpdgaIVIFSAHGVSKAVEDEAKRRDLTVFDATCPLVTK 101
                 789************************99**************************99664334567********************************* PP

                 HHHHHHHHHHCT-EEEEES-TT-HHHHHHHCC....T--TEEEESSCHHHHHG......CEEEEE-TTS-HHHHHHHHHHHHHHSTCEEE..C-S--CH CS
        LYTB  94 vqkevkklakegyeiviiGkkkHpEvegilgq....aeekvvvveeseevekl......kvalvsQTTlsveefeeivealkkklkelev..kdtiCka 180
                 v+ ev k+ak g++ ++iG+++HpEveg++g      + ++++ve+ e+v+kl      ++a+v+QTTls+++++++++alk++++ +++  kd+iC+a
  EGE27579.1 102 VHIEVGKFAKGGMDAILIGHAGHPEVEGTMGRfdtsFGGRIHLVEDVEDVAKLdferdkSLAFVTQTTLSMDDTANVIDALKDRFPAINAprKDDICYA 200
                 ********************************55443677****99999999999**988**************************999888******* PP

                 HHHHHHHHHHHHGHSSEEEEES-TT-HHHHHHHHHHHHCSCTEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH CS
        LYTB 181 tqeRqeavkelakevdlvivvGgknSsNtkkLveiakeknkktyliesaeeldeewlegvkkvgitaGaStpeelieeviekl 263
                 tq+Rq+avk l++++++v+vvG+ nSsN+++L e+a++ ++++yli++a +++++w+egv+ vg+taGaS+pe li+ev+++l
  EGE27579.1 201 TQNRQDAVKLLSRHCEVVLVVGSPNSSNSNRLRELAERMGRRAYLIDNAGQMSQAWFEGVTYVGVTAGASAPEILIQEVLDTL 283
                 ********************************************************************************988 PP

>> DUF1363  Protein of unknown function (DUF1363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.3e-05       0.2      38      91 ..     181     234 ..     169     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
     DUF1363  38 dlkareaqnnntnsdticfsthlhkrsnrrldrrceyifgicsikgnsaarrkk 91 
                  lk r    n    d ic++t+ ++ + + l r+ce ++ + s +  ++ r ++
  EGE27579.1 181 ALKDRFPAINAPRKDDICYATQNRQDAVKLLSRHCEVVLVVGSPNSSNSNRLRE 234
                 57888888899999*************************999977665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2332.79
//
Query:       EGE27580.1  [L=589]
Description: single-stranded-DNA-specific exonuclease RecJ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-23   82.4   0.0    6.7e-23   81.6   0.0    1.4  1  DHHA1     DHHA1 domain
    1.7e-18   66.8   0.0    3.4e-18   65.9   0.0    1.5  1  RecJ_OB   RecJ OB domain
    4.1e-09   36.6   0.0    7.6e-09   35.7   0.0    1.5  1  DHH       DHH family
  ------ inclusion threshold ------
       0.13   12.9   0.2       0.35   11.5   0.2    1.7  1  PIGA      PIGA (GPI anchor biosynthesis)


Domain annotation for each model (and alignments):
>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   1.5e-26   6.7e-23       1     137 [.     323     459 ..     323     460 .. 0.92

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.5e-26
                 HHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEECTCEEEEEECHCCHHHHHHHHHHHHHHTHGBTTCEEEEEEEE...CT..EEEEEEEESSHSS CS
       DHHA1   1 leslneerkelekeleelkealaklkaeellekaeevkgvkvlvaevgeewdagalgiaadklksklkkpvivfvakee...gd..kvkvsarskkdgv 94 
                 l++ln+ r+ +e  +  + +a+a+++  + +++     + +  ++ ++++w++g++gi+a++lk+kl++p+ivf+ ++    g+   +k+sars++ g+
  EGE27580.1 323 LNQLNQSRRHVEMSM--KDDAIAIVQSLSEFDE-----TPPKGIVLYQDDWHQGVIGIVAGRLKEKLYRPSIVFAPADTalvGKsdDIKGSARSIA-GI 413
                 689************..*********9999988.....9999999999**************************998852222347**********.** PP

                 -HHHHHHH...HHHHTTCCEEEETCEEEEEEEHCHHHHHHHHHHHH CS
       DHHA1  95 dagelake...aaaklgggGGGHdlAaGagipaekleealealeea 137
                 +++++++    a+++l+  +GGH++AaG++i++ ++e + +al+++
  EGE27580.1 414 HIRDVIESvalAHPDLIKHFGGHAMAAGLTIQKADFERFNQALQAV 459
                 ********9999*****************************99876 PP

>> RecJ_OB  RecJ OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   7.6e-22   3.4e-18       2     108 .]     475     578 ..     474     578 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 7.6e-22
     RecJ_OB   2 DaeldlseiteelleelerlePfGkgnpePvfllknvkvesarivgkeknhlklkledes.gksleaiaFnlaekleelekgdkvdiaytleinefngr 99 
                 D+ l ++e ++++++ l+ +  +G+g+  Pvf  k+ +v + ri+++  +hlkl+l+ ++ +  ++ai+Fn + +  +      v+i+ytl+ine++g 
  EGE27580.1 475 DGALLPDEFSLSFVDRLKNISVWGNGFVPPVFDGKF-EVINHRILKD--KHLKLSLKMAGvQYPIDAIWFNYQADSWD-YRAFGVHILYTLDINEWQGS 569
                 89999*******************************.**********..*******9999999********7766554.55589*************** PP

     RecJ_OB 100 etlqlrikd 108
                 ++lql ikd
  EGE27580.1 570 QSLQLVIKD 578
                 *******98 PP

>> DHH  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.7e-12   7.6e-09       1      71 [.      80     187 ..      80     234 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.7e-12
                 EEEEE-ECSSSHHHHHH.HHHHHH.......................................CECS--TCGGCGCCHHCCCSEEEEEEE-S---S... CS
                 xxxxxxxxxxxxxxxxx.xxxxxx.......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF
         DHH   1 kilivghknpDtDsigS.aialan.......................................llvDhneksqavegeakeeaedviiiDHHrlge... 56 
                 +ili  ++++D+D+++S a++++                                        ++vD++++s++ +++a + + +v+i+DHH   +   
  EGE27580.1  80 RILI--VGDFDCDGATStALMVRVlrqmgalvdflvpdrfkfgygltpqivehgaalyrpnliITVDNGISSHDGVATAHQMGIKVVITDHHLTTKpsp 176
                 5778..99*********88888887777777777777777777777777777777777777777*****************************986443 PP

                 .S---SS--EEEE-SS CS
                 .xxxxxxxxxxxxxxx RF
         DHH  57 .efetlapilflnepv 71 
                        + ++  +++
  EGE27580.1 177 pA-----DAVVNPNQL 187
                 30.....333333333 PP

>> PIGA  PIGA (GPI anchor biosynthesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   7.7e-05      0.35      64      85 ..     149     170 ..     140     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.7e-05
        PIGA  64 aheailhaktlGlktvftDhsL 85 
                 +h+ +  a+ +G+k+v tDh L
  EGE27580.1 149 SHDGVATAHQMGIKVVITDHHL 170
                 7999****************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4173.10
//
Query:       EGE27581.1  [L=213]
Description: hypothetical protein EA1_01777 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-40  136.3  14.9    4.1e-22   77.8   3.1    2.4  3  UPF0126   UPF0126 domain


Domain annotation for each model (and alignments):
>> UPF0126  UPF0126 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   2.6     2e-22   3.6e-18       3      76 ..      16      88 ..      14      90 .. 0.93
   2 !   77.8   3.1   2.3e-26   4.1e-22       2      76 ..     101     173 ..     100     174 .. 0.96
   3 ?   -3.2   0.0      0.44   7.8e+03       7      19 ..     185     198 ..     184     204 .. 0.63

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 2e-22
                HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHTTSSSSGHHHSSTCHHHHHHHHHHHHHHH CS
     UPF0126  3 ldaiGlaafavsGalvAlkkgldllgvvvlGvvTAvgGGvlRDvllgrevPvvllreelyataallgalvvvll 76
                ld+iG+ a a++ +  A+ k++dl+g++++ +v A+gGG lRD++l+r  P++++++  y++++  +++++ l+
  EGE27581.1 16 LDMIGISACAIAATTLAMYKRFDLFGCILVSMVNAIGGGSLRDIILDR-HPLFWMTDLTYVILITTTSIICQLF 88
                8**********************************************6.9*******99999999888887665 PP

  == domain 2  score: 77.8 bits;  conditional E-value: 2.3e-26
                 HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHTTSSSSGHHHSSTCHHHHHHHHHHHHHHH CS
     UPF0126   2 ildaiGlaafavsGalvAlkkgldllgvvvlGvvTAvgGGvlRDvllgrevPvvllreelyataallgalvvvll 76 
                 ++daiGla+f+v+G  vAl+ + ++l++v+++v+T ++GG++RD++++ e+P+vl +e +y++a+++g++++++l
  EGE27581.1 101 FFDAIGLAVFSVIGLTVALSFDAHPLIAVMMAVMTSIAGGIMRDMICN-EIPLVLQKE-IYISASIIGSALYLVL 173
                 79**********************************************.6*****776.*************987 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.44
                 HHHHHHHHHH.HHH CS
     UPF0126   7 GlaafavsGa.lvA 19 
                 Gla+ ++ G+ + A
  EGE27581.1 185 GLALVSIFGIrMLA 198
                 67777777764444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1672.05
//
Query:       EGE27582.1  [L=266]
Description: radical SAM superfamily protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-10   39.3   0.0    1.3e-09   38.6   0.0    1.3  1  Radical_SAM  Radical SAM superfamily
    2.9e-09   37.1   0.1      6e-09   36.1   0.0    1.5  2  Fer4_14      4Fe-4S single cluster domain
    1.5e-06   28.5   0.0    2.4e-06   27.8   0.0    1.3  1  Fer4_12      4Fe-4S single cluster domain
  ------ inclusion threshold ------
        0.1   12.5   0.1       0.23   11.4   0.1    1.5  1  PyrI_C       Aspartate carbamoyltransferase regulatory chain,


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0     3e-13   1.3e-09       3      88 ..      72     147 ..      70     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 3e-13
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtl 88 
                   + gC+lrC++C++++   +   g+   +++i+ ++ ++     +  v ++ggepl++p+ + l+ +l++    g+++++et g l
   EGE27582.1  72 RLTGCPLRCHYCDTTY---SFSGGERWGLDDIMTHIAQYP----CWRVCVTGGEPLAQPNAIALMHKLIQS---GYEVSLETAGAL 147
                  678************9...79***************9998....99************************8...********9976 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.3e-12     6e-09       1      92 [.      69     148 ..      69     164 .. 0.84
   2 ?   -3.5   0.0       2.5   1.1e+04      80      96 ..     188     204 ..     178     216 .. 0.59

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.3e-12
     Fer4_14   1 lfvrlsgCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngtle 92 
                 +f+rl gC+l C  Cd++  ++++ g+    +++ + +    ++ +    + +tGGePL    +++ + l+++l +++  +++ let g l 
  EGE27582.1  69 IFIRLTGCPLRCHYCDTT--YSFSGGERWGLDDIMTHI---AQYPC--WRVCVTGGEPL---AQPNAIALMHKLIQSG--YEVSLETAGALS 148
                 7**************976..589999998888887777...44444..359********...679*************..*******99887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.5
     Fer4_14  80 ekkiwletngtleiele 96 
                 ++ i   t + +++++ 
  EGE27582.1 188 KIVIANRTDYEWAKNII 204
                 44555566666665554 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   5.4e-10   2.4e-06       8      81 ..      69     138 ..      57     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 5.4e-10
     Fer4_12   8 lslfvsgCnlsCkgCfnketwsfksgkeftkelleeiiedlkkesiegltllGGEPllpena.eallelvkevke 81 
                 ++++++gC+l+C +C    t sf++g+ +    l+ i+++++++    + ++GGEPl++ na   + +l+++ +e
  EGE27582.1  69 IFIRLTGCPLRCHYCD--TTYSFSGGERWG---LDDIMTHIAQYPCWRVCVTGGEPLAQPNAiALMHKLIQSGYE 138
                 5888**********97..999******998...88999********************88873444567776665 PP

>> PyrI_C  Aspartate carbamoyltransferase regulatory chain, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.1e-05      0.23      31      44 ..      75      88 ..      65      90 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.1e-05
                TTEEEETTT--EEE CS
      PyrI_C 31 kvklkCkYCekeis 44
                 + l+C+YC++++s
  EGE27582.1 75 GCPLRCHYCDTTYS 88
                5679*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1936.12
//
Query:       EGE27583.1  [L=458]
Description: diaminobutyrate--2-oxoglutarate aminotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-98  327.8   0.0    9.3e-98  327.5   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
     0.0019   17.4   0.0      0.034   13.3   0.0    2.0  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.5   0.0    1e-101   9.3e-98       8     406 .]      39     449 ..      32     449 .. 0.93

  Alignments for each domain:
  == domain 1  score: 327.5 bits;  conditional E-value: 1e-101
                  -SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHH CS
  Aminotran_3   8 nlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlK 105
                  +l+l+i ka+G+++tdv+g++ylD +++   ++lGh+hP+ ++a+k+++++   +    +t+    +++ekll+ +pk++   f   +G++ +e+A+K
   EGE27583.1  39 KLPLAIAKAQGCWVTDVEGNEYLDCLAGAGTLALGHNHPATINAIKDVLDSGLPLHTLDITTPIKDAFTEKLLSFFPKDFVLQFCGPTGADGTEAAIK 136
                  45699**********************************************98777667777777889**********88899999************ PP

                  HHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HH...HHHHHHHHHHHHHH.CHTCCCE..EEEE CS
  Aminotran_3 106 larkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkene...eeeaalleeleale.kkkkdev..aAvi 197
                  la+       +t + ++iaf+g++HG t+gal++tg+    k+++g+++++v +l+yp e++++         +al+ ++e+ + ++++  v  aAvi
   EGE27583.1 137 LAKT------YTGRDNVIAFSGGYHGMTHGALAMTGN-LSAKQKVGNLMAGVQFLPYPHEYRCPLGLggeAGVDALTYYFENFIeDVESGVVkpAAVI 227
                  ****......9**************************.99***********************9976444566788889999885333333355**** PP

                  E-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-H CS
  Aminotran_3 198 vEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnp 295
                  +E+iqgegGvv+a++++l+k+re++++hd++li DEvq Gf+r+Gk+fA eha++ pD+++++Ka++gGlpl++ + ++   +a++p +h +Tf Gn 
   EGE27583.1 228 LEAIQGEGGVVPAPKKWLQKVREVTARHDIVLILDEVQAGFARSGKMFAFEHAEIVPDVVVMSKAVGGGLPLAVLAINK-KFDAWSPAGHTGTFRGNQ 324
                  ************************************************************************8766655.579999************ PP

                  HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC............HHHHHHHHHCTEE-EEETT.. CS
  Aminotran_3 296 lacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke............keilkkakekGvlilsaGd.. 379
                  la+a+  +vl+ i +++l++na+  g+ l+++L++++++y  i++vRg Glm++ie+++e+++ +            ++i k+  ++ +l+   G+  
   EGE27583.1 325 LAMAAGYNVLTQISQNNLADNARIQGEFLRTELQKIASQYPCIGHVRGCGLMMGIEIVDERQEADhmgsypadgelaAAIQKACFDNKLLLERGGRgg 422
                  ************************************************************997779**********8778888899999999888888 PP

                  TEEEE---TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 380 nvirllppliitdeeidelleilkkal 406
                  +v+rll p +it +e++++++++kka+
   EGE27583.1 423 TVVRLLCPITITTDECEQVITRFKKAV 449
                  ************************986 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.01        94      11     111 ..      70     162 ..      66     170 .. 0.69
   2 !   13.3   0.0   3.8e-06     0.034     139     216 ..     213     288 ..     196     380 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.01
                    TTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THH CS
  Aminotran_1_2  11 ylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasy 106
                    +  + ++p   +++k   ++ l  +tl +++pi+  +++ e+l +f+        +   + +  +Ga+   +a++ + ++   d++++++  y  +
     EGE27583.1  70 LALGHNHPATINAIKDVLDSGLPLHTLDITTPIK--DAFTEKLLSFFP------KDFVLQFCGPTGADGTEAAIKLAKTYTGRDNVIAFSGGYHGM 157
                    5556566667777777777667777777777777..999999999999......333333455567777777777777677899999999999998 PP

                    HHHHH CS
  Aminotran_1_2 107 knilr 111
                    ++++ 
     EGE27583.1 158 THGAL 162
                    88765 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.8e-06
                    HTTHHCTTETEEEEEEESS-TTT--B--HHHH.HHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEE CS
  Aminotran_1_2 139 lkeapegnkktkvilvesphNPtGtvatleel.eklldlakkynlllfvDeaYagfvfgsldavatranveeepnlliv 216
                    +++  +g +k+  +++e ++   G+v+ ++++ +k+ +++ ++ ++l++De+ agf+   + +    ++ +e + +++v
     EGE27583.1 213 IEDVESGVVKPAAVILEAIQGEGGVVPAPKKWlQKVREVTARHDIVLILDEVQAGFARSGKMF---AFEHAEIVPDVVV 288
                    34444467788899999999999999887776489**********************998765...3333333334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3490.86
//
Query:       EGE27584.1  [L=46]
Description: hypothetical protein EA1_01792 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.071   13.2   0.0      0.088   12.9   0.0    1.2  1  SPO11_like  SPO11 homologue


Domain annotation for each model (and alignments):
>> SPO11_like  SPO11 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.9e-06     0.088      11      25 ..      21      35 ..      19      43 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.9e-06
  SPO11_like 11 FFevLDrHRasLLAa 25
                FF+  D+H+asL  +
  EGE27584.1 21 FFKLFDKHKASLSYK 35
                ***********9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 389.55
//
Query:       EGE27585.1  [L=514]
Description: L-2,4-diaminobutyrate decarboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-60  204.4   0.1    2.9e-60  204.0   0.1    1.1  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    7.9e-08   31.9   0.1    1.6e-07   30.9   0.1    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00018   20.4   0.0    0.00029   19.7   0.0    1.2  1  SepSecS          O-phosphoseryl-tRNA(Sec) selenium transferas
    0.00019   20.6   0.8    0.00052   19.1   0.3    1.9  2  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.039   12.7   0.1      0.076   11.7   0.1    1.5  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain
      0.074   12.2   0.1       0.13   11.4   0.1    1.4  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.0   0.1   9.7e-64   2.9e-60      36     374 ..      83     428 ..      52     429 .. 0.88

  Alignments for each domain:
  == domain 1  score: 204.0 bits;  conditional E-value: 9.7e-64
                    -TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-EEEEESSHHHHHHHHHHHHH.HHHHHHH CS
  Pyridoxal_deC  36 twhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegggvlqvgssestllallAar.tkvikem 130
                      h+p+  + l   + + s ++++L +a n+ + +w++sPa  ++ev+++dwl++ +g      +    gv+++g++ s+l+++l ar + + k++
     EGE27585.1  83 KVHHPHSLAHLHCPTMVTSQIAEILINATNQSMDSWDQSPAGSLMEVLLIDWLRQKVGYG---AG--RAGVFTSGGTQSNLMGVLLARdWCIAKHY 173
                    3588**99***999********************************************99...23..479************98777715555666 PP

                    HHH.TTTS...HH....HHHCCEEEEEETTS-HHHHHHHHHHT-E...EEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB-- CS
  Pyridoxal_deC 131 kek.gkelk..ea....eildklvlytsdqahssvekaalvlgvk...lrvipldengklrgaalekaieedkekGlipffvvatlGttvlgaFdd 216
                     +k gk+++        + ++   + +s++ah sv+k  +++g++   + +ip+++n ++ ++al   + + ++ G i+ +vvat+Gtt  ga dd
     EGE27585.1 174 TDKdGKPWSvqRDgippDAMQNVKVLCSQNAHFSVQKNMAMMGMGfasVVSIPVNDNAQMDTQALADIMADLHADGNIVACVVATAGTTDAGAIDD 269
                    5541566642122122246788999**********9999999999888999********************************************* PP

                    HHHHHHHHHHCT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHHH-EEECCCT.TT..TTTSEECCCG CS
  Pyridoxal_deC 217 lkelgdicekydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvlldcsalivkdkealqqalqleaeYLehed..sdvaadlgtk 310
                    +k +  +c+k + wlHvDAA++G+++++  +r +l gi + dS+t+  hK     + c+a+++kd+++    ++ eaeYL+ +       ++l  k
     EGE27585.1 270 IKAIRALCDKFGAWLHVDAAWGGALLLSNDYRSMLDGIHLTDSVTLDFHKHYFQSISCGAFLLKDEQNYR-FMHYEAEYLNSAYdeEHGVPNLVSK 364
                    *****************************************************************99975.5569*****96545534468999** PP

                    SSSSSGHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTBSSEEEEEE CS
  Pyridoxal_deC 311 aiplsrrvrilklwfvlralGveglqnqirksvelakyleklirkderfeivaevelglVcFrl 374
                     +++ rr+++lklw+ + alG e +   i++ v+l k++++ ir+    e+  e++++ V Fr+
     EGE27585.1 365 SLQTTRRFDALKLWLTIEALGEELYGSMIDHGVNLTKQVADYIRHADGLELLVEPQFASVLFRV 428
                    **************************************************************97 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.1   5.4e-11   1.6e-07      73     234 ..     197     408 ..     192     437 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 5.4e-11
                      EEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEE CS
  Beta_elim_lyase  73 evivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhl 166
                      +v+++++ah+  + + a+  ++ + ++ ++ +++ +md ++l++++++    ++   + ++  T  t    +  ++ +++++a+++k g  lh+
       EGE27585.1 197 KVLCSQNAHFSVQKNMAMMGMGFASVVSIPVNDNAQMDTQALADIMADLH--ADGNIVACVVATAGT--TDAGAIDDIKAIRALCDKFGAWLHV 286
                      799***************9**99*******9999**********999944..455555555555554..567789******************* PP

                      EETTHHHHHHHHTS-CHHHH...TTSSEEEEESSSTT--SS..-EEEEE-HH.......................................... CS
  Beta_elim_lyase 167 DgARfanaakslgeivkemf...syvDsvtmslkKdllanv..Ggvlafrddel........................................ 215
                      D+A  +  a  l+ + ++m+      Dsvt+ + K  +  +  G++l+ +++++                                        
       EGE27585.1 287 DAA--WGGALLLSNDYRSMLdgiHLTDSVTLDFHKHYFQSIscGAFLLKDEQNYrfmhyeaeylnsaydeehgvpnlvskslqttrrfdalklw 378
                      **9..666779999999999666779**********9876633788888888778888887777777777777777777777777776666666 PP

                      .............HHHHHHHHHHHHT---S CS
  Beta_elim_lyase 216 ...........edylaerveqrkylggglr 234
                                    +++ v++ k++++ +r
       EGE27585.1 379 ltiealgeelyGSMIDHGVNLTKQVADYIR 408
                      666666666664455555555555555444 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   9.6e-08   0.00029     108     195 ..     202     291 ..     190     317 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9.6e-08
                 EEETCHHHHHHHCTT-EEEEE-EEECTTEEEEHHHHHHHHH..HCCTCCCEEEEEECSSTTTTB----HHHHHHHHHCCT--EEEEGCCC CS
     SepSecS 108 ridekSslkavelaGleialvekvlegDelitdvedveeii..ekkreevilavlstlsffaprspDdvkeiakiCaeydvPhlvNgAYa 195
                 + ++ S  k + ++G+  a v  +  +D+++ d+++  +i+   +  ++ +++v++t  +      Dd+k+i ++C++++  + v +A++
  EGE27585.1 202 QNAHFSVQKNMAMMGMGFASVVSIPVNDNAQMDTQALADIMadLHADGNIVACVVATAGTTDAGAIDDIKAIRALCDKFGAWLHVDAAWG 291
                 44566999********************************954456788999***9999888888888************9999999987 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.54   1.6e+03      65      77 ..     148     160 ..     145     171 .. 0.78
   2 !   19.1   0.3   1.7e-07   0.00052      90     177 ..     197     289 ..     190     292 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.54
                  EEESSHHHHHHHH CS
  Aminotran_5  65 iftsGtteainlv 77 
                  +ftsG+t+++ + 
   EGE27585.1 148 VFTSGGTQSNLMG 160
                  8******887655 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.7e-07
                  EEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH-......-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-T CS
  Aminotran_5  90 eivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekll......nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaa 177
                  +++ +++ h +    ++++     a v+ ip++++ ++d+++l++ +       + ++ v  t+  +  G i+++++i +l+ k ga+++vDaa
   EGE27585.1 197 KVLCSQNAHFSVQKNMAMMG-MGFASVVSIPVNDNAQMDTQALADIMadlhadGNIVACVVATAGTTDAGAIDDIKAIRALCDKFGAWLHVDAA 289
                  57778888888886666666.566899************99999888666664456778889999****************************8 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.6e-05     0.076     149     213 ..     231     297 ..     191     353 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.6e-05
                 GGGSHHHHHHHHHHSTTTGSESEEEE.ESS.-TTSEEE-HHHHHHHHTTSESEEEEE-TT-TTGGGS CS
    OKR_DC_1 149 kefeeetlkekikevpdakaprlavi.tns.TYdGvlynakeivdkleklsdrilfDeAwvgyeqfi 213
                  +++++ l+  +++   + + + +v+ t + T  G + ++k i  + +k++  +++D Aw+g   ++
  EGE27585.1 231 AQMDTQALADIMADLHADGNIVACVVaTAGtTDAGAIDDIKAIRALCDKFGAWLHVDAAWGGALLLS 297
                 34566667777776655555566666255525569*************************9976655 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.4e-05      0.13     107     199 ..     209     299 ..     192     326 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.4e-05
                    HHHHHHTTSE...EEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSH CS
  Aminotran_1_2 107 knilrlsgge...vvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsld 199
                    +++  ++g+    vv++p++  ++ ++d +al +  ++++++     +++   +   t ++   ++++++ +l++k +++l vD a +g  + s d
     EGE27585.1 209 QKNMAMMGMGfasVVSIPVN--DNAQMDTQALADIMADLHADGN---IVACVVATAGTTDAGAIDDIKAIRALCDKFGAWLHVDAAWGGALLLSND 299
                    55555544433156777755..*****************99999...66666666777778899999999999*************9987666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3791.21
//
Query:       EGE27586.1  [L=616]
Description: excinuclease ABC subunit C [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-48  164.8   0.6    3.1e-47  160.3   0.0    2.3  2  UvrC_HhH_N     UvrC Helix-hairpin-helix N-terminal
    5.9e-10   39.3   0.9    1.3e-09   38.2   0.1    2.1  2  GIY-YIG        GIY-YIG catalytic domain
    6.5e-09   35.3   2.2    1.7e-08   33.9   2.2    1.7  1  UVR            UvrB/uvrC motif
    5.9e-07   29.5   0.0    1.6e-06   28.1   0.0    1.7  1  HHH_2          Helix-hairpin-helix motif
      7e-06   26.6   0.0    1.8e-05   25.3   0.0    1.7  1  HHH_5          Helix-hairpin-helix domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.063   13.2   0.0    2.3  2  HHH            Helix-hairpin-helix motif
      0.037   13.9   0.3       0.14   12.1   0.0    2.2  3  HEPN-like_int  HEPN-like integron domain


Domain annotation for each model (and alignments):
>> UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.4     0.063   1.6e+02      91     154 .]     203     268 ..     197     268 .. 0.73
   2 !  160.3   0.0   1.2e-50   3.1e-47      10     154 .]     406     548 ..     402     548 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.063
                 HHHHHHHHHHTT----EEEEES............SSSEE....EE--TT-HHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxx RF
  UvrC_HhH_N  91 lnaakevleelglkipvvglaKdkkrktrakaeereeev....lelkkssealkllqrirdeaHrfAI 154
                 ++aa + l+    +++ + ++K ++ + + +   ++  +    l + ++ +a + + r++ ea+ fAI
  EGE27586.1 203 VRAALAFLQGHSHEVQAILVKKMEEAAAALN--FEQAAFyrdrLAMISDLQAKQAVFRLQGEADVFAI 268
                 7788888888888888887777544433333..232334667799999999999************98 PP

  == domain 2  score: 160.3 bits;  conditional E-value: 1.2e-50
                 --EEEEEEEEEETTTEEEEEEEEEETTEE-GGG-EEEEEE.-SS--HHHHHHHHHHHHHTTS.....---SEEEESSSHHHHHHHHHHHHHTT-..--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx RF
  UvrC_HhH_N  10 pkriecyDiShiqgtntvgsmvvfedgkpkkseyRkfkiksvkegdDyaamrevlrRrfkrllkefsklPdLiliDGGkgqlnaakevleelgl..kip 106
                 + riec+DiSh++g++++gs+vvf++++pkk++yR++ i++ ++gdDyaamr+vl Rr+++     ++lPdL+liDGGkgqln+a evl+elg   +  
  EGE27586.1 406 IDRIECFDISHTMGEAAIGSCVVFDQNGPKKRDYRQYAIHDITAGDDYAAMRQVLMRRYTK-----HPLPDLLLIDGGKGQLNVAIEVLSELGKltDTL 499
                 78*********************************************************99.....589************************989999 PP

                 EEEEES................SSSEEEE--TT-HHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  UvrC_HhH_N 107 vvglaKdkkrktraka....eereeevlelkkssealkllqrirdeaHrfAI 154
                 +vg+aK++ rk   ++    ++   e ++l+ +s+al+l+++irdeaHrfAI
  EGE27586.1 500 LVGVAKGEGRKAGLEVlhfvTH---EPIDLPADSKALHLIMQIRDEAHRFAI 548
                 *******999888887854433...34************************8 PP

>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       3.3   8.6e+03      24      32 ..      15      23 ..      12      25 .. 0.81
   2 !   38.2   0.1     5e-13   1.3e-09       3      78 .]      30     104 ..      28     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.3
                HHHHHHHHH CS
     GIY-YIG 24 ekRlkqHna 32
                ++RlkqH +
  EGE27586.1 15 RQRLKQHAN 23
                69*****65 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 5e-13
                 EEEEEEETTT--EEEEEESSHHHHHHHHHHHHHHT--S-HS.STEEEEEEEE----HHHHHHHHHHHHHHTTSSSS CS
     GIY-YIG   3 gvYiirskenkliYvGstknlekRlkqHnagkkakytrkkgkkpfeliileifptksealelEkklikkyksnkyn 78 
                 g+Y +  k ++++YvG++k+l++R ++++a++  + ++++ ++  e i + i   ++eal lE+ lik++++  yn
  EGE27586.1  30 GIYKMLGKSGEILYVGKAKSLKNRVGSYFAKTIEHPKTQALVQRIEQIEIIITRGETEALLLEQNLIKNHRP-PYN 104
                 89**************************************9999****9***********************.998 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   2.2   6.7e-12   1.7e-08       7      34 ..     221     248 ..     217     250 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 6.7e-12
         UVR   7 LeeemeeAaenedFEkAAklRDqinalk 34 
                 L ++meeAa++++FE+AA++RD+++ ++
  EGE27586.1 221 LVKKMEEAAAALNFEQAAFYRDRLAMIS 248
                 789*********************9986 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   6.2e-10   1.6e-06       8      56 ..     567     615 ..     565     616 .] 0.95

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 6.2e-10
       HHH_2   8 IrhVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsivefFe 56 
                 I+  G+   ++L ++F+ +++L  as +e+++v++iG+  A  i++ ++
  EGE27586.1 567 IPGLGQVRRRDLLNHFGGIQQLLGASQDEIAQVKGIGPMLAGTIYKALH 615
                 899999999***********************************99887 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     7e-09   1.8e-05       4      56 ..     564     615 ..     561     616 .] 0.93

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 7e-09
                 HHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5   4 LlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilelk 56 
                 L  ++G+G ++ + ll++ ++ +++l+ a+++e+a+++GiG+ +A  i  +l 
  EGE27586.1 564 LEVIPGLGQVRRRDLLNH-FGGIQQLLGASQDEIAQVKGIGPMLAGTIYKALH 615
                 5569**************.***************************9999885 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.1   5.5e+03      16      28 ..     567     579 ..     564     581 .. 0.79
   2 ?   13.2   0.0   2.5e-05     0.063       8      28 ..     591     611 ..     585     613 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.1
                 STT-SHHHHHHHH CS
         HHH  16 lPGVGpktAeaIl 28 
                 +PG G  + +  l
  EGE27586.1 567 IPGLGQVRRRDLL 579
                 8****99888776 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.5e-05
                 SSHHHHHTSTT-SHHHHHHHH CS
         HHH   8 asreeLlalPGVGpktAeaIl 28 
                 as +e+++++G+Gp  A+ I+
  EGE27586.1 591 ASQDEIAQVKGIGPMLAGTIY 611
                 899**************9997 PP

>> HEPN-like_int  HEPN-like integron domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.1   5.4e+03      11      32 ..     209     230 ..     206     251 .. 0.68
   2 ?   -3.3   0.1         3   7.7e+03       5      23 ..     313     332 ..     310     348 .. 0.57
   3 ?   12.1   0.0   5.4e-05      0.14      74     139 ..     514     577 ..     484     579 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.1
  HEPN-like_int  11 yiqdvaieirsavledliegke 32 
                    ++q  ++e++  +++++ e   
     EGE27586.1 209 FLQGHSHEVQAILVKKMEEAAA 230
                    6788899999888877765543 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3
  HEPN-like_int   5 llklyfyiq.dvaieirsav 23 
                    ll +yf +  d   ei s+v
     EGE27586.1 313 LLSFYFQVSdDLPDEIISSV 332
                    67766655413455555555 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 5.4e-05
  HEPN-like_int  74 EkkdrlltslpiElakelkelkkkffledikeyRntyvaHvldkdkekflsqeElirtlekilkvd 139
                    E+ + + t+ pi+l  + k+l+ +++ +d   +R  + aH   +dk++  s++E+i  l ++   d
     EGE27586.1 514 EVLHFV-THEPIDLPADSKALHLIMQIRD-EAHRFAITAHRKKRDKKRSSSVLEVIPGLGQVRRRD 577
                    555544.999******************9.689***********************9999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4669.01
//
Query:       EGE27587.1  [L=225]
Description: phosphoglycolate phosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-36  126.6   0.0    1.3e-36  126.4   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    7.1e-20   72.2   0.0    2.3e-19   70.5   0.0    1.7  1  Hydrolase       haloacid dehalogenase-like hydrolase
    8.6e-11   41.8   0.0    1.7e-10   40.8   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
      2e-09   38.2   0.1    7.2e-09   36.3   0.1    1.9  1  HAD             haloacid dehalogenase-like hydrolase
    5.9e-07   29.5   0.2      0.069   12.9   0.0    3.2  3  Hydrolase_3     haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.011   15.3   0.0       0.64    9.5   0.0    2.4  2  S6PP            Sucrose-6F-phosphate phosphohydrolase
      0.017   15.3   0.1       0.13   12.4   0.1    2.1  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0     5e-40   1.3e-36       1     178 []      12     194 ..      12     194 .. 0.97

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 5e-40
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee......kieellrkyneekkkkevkpydgvkelLeeLke 93 
                 iiFDlDgTl+d+ + +++a+n ++++ +l+ ++ + +++ +g  + +l++++ +  +  +       +e +l +y ++  + +++ y gv++ Le Lk+
  EGE27587.1  12 IIFDLDGTLIDSAPDLAAAVNGMYAKLNLPPMPIDIIKSWVGNGSLKLVERAMQAHHIYDttmihhAHELFLAEYAHKTIE-NTQSYAGVIQGLERLKA 109
                 8**************************************************999877766898888999999999999999.***************** PP

       HAD_2  94 agyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178
                 ag+ l+i T+k ++ + + l+++g+ ++Fd+++++++ + kKPdp++++ ++++l++ + ++i+vGDs++Di ++++agi+++av
  EGE27587.1 110 AGFYLAICTNKPERYLPKILSHFGWLTLFDQVIGGDTLSVKKPDPTPLLYLCQSLGIAPTDAIMVGDSKNDILSGQAAGITTLAV 194
                 **********************************************************************************987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   9.2e-23   2.3e-19       2     210 .]      10     188 ..       9     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 9.2e-23
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH.HHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar.sgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrt 99 
                 k+++fD+dGTL+++ p +  +++                        a  ++ + +++ +        +  g+ +++++     + +   ++   ++  
  EGE27587.1  10 KLIIFDLDGTLIDSAPDLAAAVNGM---------------------YAKLNLpPMPIDIIKS-----WVGNGSLKLVERA---MQAHHIYDTTMIHHAH 79 
                 89***********************.....................3333336888899999.....8888888888888...3333344444445555 PP

                 HHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 100 vallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVG 197
                 + +l   ++a  ti+++ + + ++ + +++Lkaag+ ++++t+  ++   ++++++G    fd vi++d+  v+kp+p  ++++++ L++ p + +mVG
  EGE27587.1  80 ELFL--AEYAHKTIENT-QSYAGVIQGLERLKAAGFYLAICTNKPERYLPKILSHFGwLTLFDQVIGGDTLSVKKPDPTPLLYLCQSLGIAPTDAIMVG 175
                 5555..66777777766.7******************************************************************************** PP

                 SSHHHHHHHHHTT CS
                 xxxxxxxxxxxxx RF
   Hydrolase 198 DgvnDaaalaaAg 210
                 D+ nD+  ++aAg
  EGE27587.1 176 DSKNDILSGQAAG 188
                 ***********98 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   6.7e-14   1.7e-10       3      73 ..     150     217 ..     148     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 6.7e-14
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddla 73 
                      KP p+ + +  + lg++p + +m+GD+ + Di+++++aG+++++V+ G +  e+     ++p++ +dd++
      EGE27587.1 150 KKPDPTPLLYLCQSLGIAPTDAIMVGDS-KNDILSGQAAGITTLAVRYGYNYGEKID--LANPDAAFDDFD 217
                     7***************************.********************98887755..357999999876 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.1   2.8e-12   7.2e-09       1     184 [.      12     181 ..      12     185 .. 0.56

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.8e-12
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpk..lldpgalellaah 97 
                 ++fD+DgTL+d+ ++ + +    ++ a+  +  +   + +++   ++    + ++++   +   +  + ++ + + +a++  +    +  g+ + l++ 
  EGE27587.1  12 IIFDLDGTLIDSAPDLAAAV--NGMYAKLNLPPMPIDIIKSWVGNGSLKLVERAMQAHHIYDTTMIHHAHELFLAEYAHKTIENtqSY-AGVIQGLERL 107
                 79**********55553333..233222224444444444443444444344444444444444444444444444433333333223.4555555555 PP

         HAD  98 raaGdrvvvvSgglrplvepllaelg....adevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDl 184
                 +aaG+ ++++++ +++++  +l ++g    +d+v++       +     +++++p                ++ gi++ + + +GDs +D+
  EGE27587.1 108 KAAGFYLAICTNKPERYLPKILSHFGwltlFDQVIGG------DTLSVKKPDPTPLLY-----L------CQSLGIAPTDAIMVGDSKNDI 181
                 5*************************77777777777......222221223333222.....2......334667777778888888887 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0013       3.3       1      13 [.      12      24 ..      12      38 .. 0.86
   2 !    5.8   0.0    0.0039        10      20      53 ..     100     133 ..      71     142 .. 0.88
   3 !   12.9   0.0   2.7e-05     0.069     192     216 ..     157     181 ..     155     189 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0013
                 EEEEIIIIIS-TT CS
  Hydrolase_3  1 ialDlDGTLlnsd 13
                 i++DlDGTL++s 
   EGE27587.1 12 IIFDLDGTLIDSA 24
                 89********986 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0039
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCC CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelg 53 
                   ++ +++lk++g++++i+T  + r + ++l ++g
   EGE27587.1 100 VIQGLERLKAAGFYLAICTNKPERYLPKILSHFG 133
                  67889*****************999999887665 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 2.7e-05
                  HHHHHHHCT--GGGEEEEESSGGGH CS
  Hydrolase_3 192 lkklakelnisleeviafGDgeNDi 216
                  l +l++ l+i + + i +GD++NDi
   EGE27587.1 157 LLYLCQSLGIAPTDAIMVGDSKNDI 181
                  679*********************8 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.018        46       2      17 ..       9      24 ..       8      40 .. 0.71
   2 ?    9.5   0.0   0.00025      0.64     170     194 ..     157     181 ..     145     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.018
                SEEEEE-TBTTTB.S- CS
        S6PP  2 klllvsdLDntlvdgd 17
                k+l++ dLD+tl+d+ 
  EGE27587.1  9 KKLIIFDLDGTLIDSA 24
                589**********433 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00025
                 HHHHHHHHT--GGGEEEEE-SGGGH CS
        S6PP 170 lryLakkleleleqilvcGdsgnDe 194
                 l yL++ l++ +   +++Gds+nD+
  EGE27587.1 157 LLYLCQSLGIAPTDAIMVGDSKNDI 181
                 78**********************6 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     5e-05      0.13       1      46 [.      12     127 ..      12     143 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
                  EEEESTTTSE......................................................................ETTEE-TTHHHHHHHHHH CS
  Hydrolase_6   1 flfDidGvLw......................................................................rgdkaipgaaealnalra 28 
                  ++fD+dG+L+                                                                      ++++ + g+ + l++l+a
   EGE27587.1  12 IIFDLDGTLIdsapdlaaavngmyaklnlppmpidiikswvgngslklveramqahhiydttmihhahelflaeyahktiENTQSYAGVIQGLERLKA 109
                  689999999999999999999999999999999999999999999999999999999999999999999999999998888999************** PP

                  TT-EEEEEE---SS-HHH CS
  Hydrolase_6  29 agkpvvllTNnsskseee 46 
                  ag  ++++TN+  +   +
   EGE27587.1 110 AGFYLAICTNKPERYLPK 127
                  **********98876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1797.23
//
Query:       EGE27588.1  [L=180]
Description: outer membrane protein J [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-19   68.2  14.8    1.1e-18   68.0  14.8    1.0  1  OMP_b-brl      Outer membrane protein beta-barrel domain
    2.1e-06   27.6   6.9    6.1e-06   26.1   6.9    1.7  1  OmpA_membrane  OmpA-like transmembrane domain


Domain annotation for each model (and alignments):
>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0  14.8   1.2e-22   1.1e-18       2     157 ..      14     167 ..      12     180 .] 0.84

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 1.2e-22
   OMP_b-brl   2 allllaalsaaaaaassfggfyvggglglskvkvdgvgsdsgfgfgvgagyefndnvgvegglsysgdkdysgs.gktdikinllsvpvnagyafnlsd 99 
                 +ll+++a +a ++ +s+++++yvg+ +g++++k   +g  +++++g+ agy+f++n+gve+++  s++k+ + +     +k +  s++++  y++n+ +
  EGE27588.1  14 SLLAMSANAAISYGNSADAQPYVGAKIGQVDAK-QING--KNTAYGIYAGYNFDQNFGVEAEFVGSDAKEFNAGmS--PVKGDVKSFGAYGTYRYNFIN 107
                 68999999999*****************99999.3334..579**********************99998888543..445566667777777777766 PP

   OMP_b-brl 100 s.vlpyggaGlgytkvevdvsgng.asdsdtdfglglgaGveyaladnwslkaeYrytdl 157
                 + ++  g++G+++tkv+v+ ++ +  s+++++++l +g+Gv+++   n+ ++a+Y+y   
  EGE27588.1 108 TpFYAKGKLGIAKTKVDVTSRNATtYSNKSDKTSLAGGVGVGFKPLANVGVEASYNYLSE 167
                 6699999999999988888776669********************************766 PP

>> OmpA_membrane  OmpA-like transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   6.9   6.8e-10   6.1e-06       7     157 ..      35     171 ..      29     177 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 6.8e-10
                    EEEEEEEEESTSSSS.....CSS-SSSSSEEEEEEEEEEEEETTEEEEEEEEEEEESSS-SS--....-S-EEEEEEEEEEEEEEESSSSEEEEEE CS
  OmpA_membrane   7 YvGakaGwasfhdtinqeknekkknierdsvtagvFgGYqinnqlalElGYdylGrakakgkkk....vvkhkaqgvtLslklsyellddldvYak 98 
                    YvGak+G+               k+i+  ++++g+++GY++ +++++E    ++G    +++      +++ k+ g+  + +  + ++  + + +k
     EGE27588.1  35 YVGAKIGQVD------------AKQINGKNTAYGIYAGYNFDQNFGVEAE--FVGSDAKEFNAGmspvKGDVKSFGAYGTYRYNF-INTPFYAKGK 115
                    6666666543............345566789*****************85..556554444333344477788888775554444.7778999999 PP

                    EEEEEEEEEEESSSSB.....EEEEEEEEEEEEEEEEEEEETTEEEEEEEEEESSSSSB CS
  OmpA_membrane  99 vGvalvradykvkedkkskekknhdtkvslllavGveyaitpelalrleYqylnnvgdl 157
                    +G+a +++d    +++++++ +n+ +k+sl  +vGv ++ + ++ + + Y yl++ +++
     EGE27588.1 116 LGIAKTKVDV---TSRNATTYSNKSDKTSLAGGVGVGFKPLANVGVEASYNYLSEDANA 171
                    9***999999...778889999999****************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1482.86
//
Query:       EGE27589.1  [L=305]
Description: glutamate-tRNA ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-46  159.0   0.0    1.5e-46  158.7   0.0    1.1  1  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d
  ------ inclusion threshold ------
       0.02   13.1   0.1       0.06   11.6   0.1    1.6  2  COG6          Conserved oligomeric complex COG6
      0.032   14.0   0.5        3.6    7.4   0.1    2.5  2  Ski_Sno       SKI/SNO/DAC family


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.0   2.5e-50   1.5e-46       5     278 ..       8     270 ..       6     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 2.5e-50
                   EE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE-STH CS
  tRNA-synt_1c   5 RfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvcectk 101
                   RfaP+Pt +LH+G+  +a+ ++   k+ +G+ +lRieD d er ++++++sil+dl+ lg++wd+++tyqs+r d+++++  + +++   Y c+c+ 
    EGE27589.1   8 RFAPSPTHHLHLGSLTTAVASFCHIKSLGGDWLLRIEDVDFERCQPKYTDSILHDLDKLGLHWDKEVTYQSKRTDIYDEILSNRLSD-ITYACQCSR 103
                   9*********************************************************************************99986.79******* PP

                   HHHHHHHCCSSHSS-TTTT.S-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSSGGGSSTEEEEEEESGGG.SBTTTBTSTSEEE-HHHHHHHHHH CS
  tRNA-synt_1c 102 eeleeereeqeklgskerd.rydeenlklfeeemkkgkaegekavvRlkideessvefrDlvrgriklepqe.ihdlvivksdiyPtYdfavvidDa 196
                    +le++r+++ k ++ +++  y + +l+       +  ++  k  +Rl++++ ++ +f D+++g i  +p   ++d+v+++++++  Y +a++idD 
    EGE27589.1 104 KQLEAHRNQNAKPHALNQPtLYPRFCLHK------DLDKSHPKSKIRLQLPNVET-AFVDELQGVIWDNPALsLGDVVVKRQNQMINYILACAIDDG 193
                   *******9955444333220344444443......4556677888******9987.**********98885348*********************** PP

                   HTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-E.EEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB- CS
  tRNA-synt_1c 197 leeithvlrteefldntpkyiwllealglevpp.fiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwt 278
                   l +ith++r+ + +  t  +i++l++ +l++p  f+h++l++n +++klSK +l++ +      +   ++e+ll +l +lG  
    EGE27589.1 194 LQNITHIMRGLDIMPMTVAQINILHKCRLPIPSyFYHLPLLMNTDGQKLSKQNLATPI------NTTKPSEMLLYALKLLGQH 270
                   ******************************97526899***************99983......3345666777777776655 PP

>> COG6  Conserved oligomeric complex COG6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.028   1.7e+02     409     461 ..      58     109 ..      52     121 .. 0.80
   2 ?   11.6   0.1     1e-05      0.06     400     481 ..     133     227 ..      76     249 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.028
        COG6 409 ealskllelletyesslaseaserekdfeevlsalldpllqacersakklekk 461
                   l++l +l  + ++ ++  +s+r  +++e+ls+ l  +  ac+ s k+le+ 
  EGE27589.1  58 SILHDLDKLGLHWDKEVTY-QSKRTDIYDEILSNRLSDITYACQCSRKQLEAH 109
                 5677777777777888887.888999*****************9999999844 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1e-05
        COG6 400 d...........LspPewlsealskllell.etyesslas.easer..ekdfeevlsalldpllqacersakklekkdkaifliNcldliqstLspy 481
                 d           L+ P+  + ++++l+ ++ ++   sl +     +  ++ ++ +l++++d  lq+++ + + l+   + + +iN+l+ ++ ++ +y
  EGE27589.1 133 DldkshpkskirLQLPNVETAFVDELQGVIwDNPALSLGDvV--VKrqNQMINYILACAIDDGLQNITHIMRGLDIMPMTVAQINILHKCRLPIPSY 227
                 144444555577***************999455555555542..3335889999**********************************999888777 PP

>> Ski_Sno  SKI/SNO/DAC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0053        32      66      89 ..      97     120 ..      81     126 .. 0.78
   2 ?    7.4   0.1   0.00061       3.6      42     105 ..     180     245 ..     178     248 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0053
     Ski_Sno  66 tcvrCtpeQleiLrelgalppsvk 89 
                 +  +C+++Qle+ r+ +a p   +
  EGE27589.1  97 YACQCSRKQLEAHRNQNAKPHALN 120
                 5679**********9999887655 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00061
     Ski_Sno  42 qilnlvLkdf...sleeintklkeLeitcvrCtpeQleiLrelga.lppsvkrcglitkrdaerLvka 105
                 q++n +L      +l++i + ++ L+i+++  t++Q++iL+++   +p+      l+ ++d ++L k+
  EGE27589.1 180 QMINYILACAiddGLQNITHIMRGLDIMPM--TVAQINILHKCRLpIPSYFYHLPLLMNTDGQKLSKQ 245
                 667777765556699**************8..799******997548888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2274.59
//
Query:       EGE27590.1  [L=42]
Description: hypothetical protein EA1_01847 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      147  (0.00819901); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 352.61
//
Query:       EGE27591.1  [L=139]
Description: RNA polymerase-binding protein DksA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-11   44.2   3.0    2.4e-11   43.4   3.0    1.3  1  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
  ------ inclusion threshold ------
      0.012   15.6   0.3       0.02   14.9   0.3    1.3  1  DZR           Double zinc ribbon
      0.012   15.5   0.8      0.022   14.7   0.8    1.5  1  zf-C2HCIx2C   Zinc-finger


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   3.0     4e-15   2.4e-11       2      33 ..      97     128 ..      97     130 .. 0.93

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 4e-15
  zf-dskA_traR   2 iygsCeeCGEpIpeaRlralPgarlCveCqek 33 
                   +yg+Ce+CG +I+  Rl+a+P+a+ C++C++ 
    EGE27591.1  97 DYGYCETCGTEIGLRRLEARPTATQCIDCKTL 128
                   59***************************975 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.3   3.4e-06      0.02      12      41 ..      98     132 ..      92     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.4e-06
         DZR  12 arfCseCgtk.....lkavaaedrCpsCgekvdpe 41 
                   +C++Cgt+     l+a +++++C  C++  + +
  EGE27591.1  98 YGYCETCGTEiglrrLEARPTATQCIDCKTLSEIK 132
                 569*******88666666666********986655 PP

>> zf-C2HCIx2C  Zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.8   3.7e-06     0.022       7      42 ..      90     124 ..      80     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-06
  zf-C2HCIx2C   7 lkeideLletyCegCflkkhfrkekgktyahsFCin 42 
                  l++i+ L+  yCe C  +  +r+ + +  a++ Ci 
   EGE27591.1  90 LADIETLDYGYCETCGTEIGLRRLEARPTATQ-CID 124
                  789*****************************.*95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1142.05
//
Query:       EGE27592.1  [L=277]
Description: calcineurin-like phosphoesterase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-16   60.7   9.7    3.6e-16   60.3   9.7    1.2  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   9.7     2e-20   3.6e-16       1     203 [.      10     207 ..      10     208 .. 0.72

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2e-20
                  EEEEEEESBTB...TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHHHHHHHHHHHHHH...H CS
  Metallophos   1 lrilvigDlHl...algggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHegfeeellnkygylgif...s 92 
                  ++i++++DlHl     +  +++++l++++ ++   +pdl ll+GDlv++g+ +  +  l+++l + +ip+ +++GNH+  ++e+    +++++     
   EGE27592.1  10 FNIVQLSDLHLtgdIGQAPSYQRFLAVFQTAKH-LNPDLWLLTGDLVNDGNSDA-YDWLFNQLQATKIPYLAVAGNHD-VTHEIGIHLAHQERIhvpI 104
                  68*********9998788899999999977655.5***************5555.6666777777778**********.6666666666666552223 PP

                  HHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHHHH..... CS
  Metallophos  93 epwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepgdewlkdlekrekadwvivlgHsplyrgsgylfgdeale..... 185
                   p r+ +++f +   a++  +   +lll+       vs +  g l++e+       +wl ++      +++i+l+H+p    s+++ + + l+     
   EGE27592.1 105 LPDRRLKNCFRYTFQAGHDWQ---ILLLNSS-----VSGEIFGLLTHET------LLWLDQTLTTHFEQTIIALHHHPTK-VSSDWIDAHLLKnhqdf 187
                  333333555555554443333...3333333.....3444444444444......88999999999999***********.99999999999999976 PP

                  ..HHHHHTTESEEEEESSSS CS
  Metallophos 186 ..dllkkygvdlvisGHtHv 203
                     ++k   v+ +++GH+H+
   EGE27592.1 188 wcVIKKHAHVHTILCGHVHQ 207
                  64556666699********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2251.90
//
Query:       EGE27593.1  [L=267]
Description: zinc ABC transporter permease protein ZnuB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-49  166.8  24.7    7.5e-49  166.6  24.7    1.0  1  ABC-3     ABC 3 transport family
    1.4e-06   27.6  26.3    1.4e-06   27.6  26.3    1.4  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6  24.7   8.3e-53   7.5e-49       4     256 ..       7     258 ..       5     260 .. 0.96

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 8.3e-53
       ABC-3   4 flqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvnlllgailvgliaavalellkrktklkedtaigivlsvflalglvlvs 102
                 ++ +a++a++l++l +a+lg++v++rr+++++d+l+H al G+a+a +l+++  lg+ ++++++ +al+llk  ++l +d+ +++++s+ l lgl++++
  EGE27593.1   7 IIAPAWIAGVLIALLSAPLGCLVLWRRMAFFSDTLAHGALLGIAFAVWLNLPADLGIGMISIAVIIALTLLKD-KRLPNDATLAVLASTLLCLGLLTLT 104
                 7889************************************************877777777777777777765.69*********************** PP

       ABC-3 103 likkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLvialliiPaa 201
                 +  + ++++  +LfG++l ++  dl  +  + a+ l++l  +w++ + +  +e+lA+ +g+++   +l ++ l+a   +valqavG +L++ lli+Pa 
  EGE27593.1 105 QLTQQQANVLGFLFGSLLDMDWSDLPRLGTLIAMGLVILKRIWQSQVKLATSEALAQIQGINPLHQHLFFMGLLAGFCAVALQAVGSLLISGLLILPAL 203
                 *************************************************************************************************** PP

       ABC-3 202 tArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllall 256
                 +Ar++++s+++++ ++i+++ ++v+aG++ S+ ld+ tG +ivl++++ f++ ++
  EGE27593.1 204 IARLFAQSPTMMVFLSIIFAQMAVTAGVWGSVWLDIQTGLSIVLMLAIGFFITFA 258
                 **************************************************99987 PP

>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6  26.3   1.6e-10   1.4e-06      97     306 ..      50     255 ..      34     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.6e-10
       FecCD  97 slslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvlllllllllll 195
                 ++ ++  + a +  ++++++++++l+  + +  p    La +a ++l+ +l +l +l+   ++ +++l  l+Gsl  ++ws++  l  l++++l++l  
  EGE27593.1  50 AFAVWLNLPADLGIGMISIAVIIALTLLKDKRLPNDATLAVLASTLLCLGLLTLTQLT---QQQANVLGFLFGSLLDMDWSDLPRLGTLIAMGLVILKR 145
                 34455555555666778888888888889999999*********************88...68899********************************* PP

       FecCD 196 larkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGL.ivPhiarllvgadhrkllplsallGallllladllarlllsptelp 293
                 + +    la+++++A+  G+n+    l+++ l a  +ava  +vG +   GL i P ++ +l+ ++ + +++ls++++ + +++  + + +l  ++++ 
  EGE27593.1 146 IWQSQVKLATSEALAQIQGINPLHQHLFFMGLLAGFCAVALQAVGSLLISGLlILPALIARLFAQSPTMMVFLSIIFAQMAVTAGVWGSVWL--DIQTG 242
                 ***************************************************7367****************************999999999..67777 PP

       FecCD 294 vgivtaliGapff 306
                 ++iv+ l ++ f 
  EGE27593.1 243 LSIVLMLAIGFFI 255
                 8888877776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2001.26
//
Query:       EGE27594.1  [L=258]
Description: zinc ABC transporter ATPase subunit ZnuC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-27   96.1   0.0    4.6e-27   95.2   0.0    1.5  1  ABC_tran      ABC transporter
    4.2e-10   39.9   3.1    0.00021   21.2   0.2    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.3e-06   28.9   0.1    2.2e-06   28.2   0.1    1.4  1  AAA_16        AAA ATPase domain
    1.4e-05   24.7   0.2    2.6e-05   23.9   0.2    1.4  1  AAA_29        P-loop containing region of AAA domain
    7.8e-05   23.0   0.0    0.00019   21.7   0.0    1.7  2  AAA_22        AAA domain
    0.00014   21.4   0.3      0.067   12.6   0.1    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0013   18.7   0.1     0.0063   16.4   0.2    2.0  2  RsgA_GTPase   RsgA GTPase
     0.0062   16.3   0.0     0.0083   15.9   0.0    1.2  1  AAA_15        AAA ATPase domain
     0.0075   16.8   0.4      0.012   16.1   0.3    1.3  1  AAA_23        AAA domain
  ------ inclusion threshold ------
      0.012   15.5   1.0      0.072   13.0   1.0    2.0  1  NACHT         NACHT domain
      0.014   15.1   0.5        4.5    7.0   0.1    2.2  2  IstB_IS21     IstB-like ATP binding protein
      0.016   15.5   0.0        0.5   10.6   0.0    2.3  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.017   15.0   0.1      0.025   14.5   0.1    1.5  1  NTPase_1      NTPase
      0.022   14.2   0.4      0.043   13.2   0.1    1.6  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.04   13.5   0.0       0.12   12.0   0.0    1.7  1  AAA_25        AAA domain
      0.044   13.8   0.0        0.1   12.6   0.0    1.6  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
        0.1   12.8   0.1       0.15   12.2   0.1    1.6  1  AAA_33        AAA domain
       0.12   11.6   0.4       0.64    9.2   0.4    2.0  1  NB-ARC        NB-ARC domain
       0.18   11.9   0.0       0.33   11.1   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
       0.19   11.7   0.1       0.44   10.5   0.1    1.6  1  AAA_5         AAA domain (dynein-related subfamily)
       0.21   12.0   0.2       0.37   11.2   0.2    1.6  1  AAA           ATPase family associated with various cellular 


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   5.4e-30   4.6e-27       2     136 ..      29     157 ..      28     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 5.4e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeiekals 90 
                 + vsl++++ge++ ++G+nGaGKStL+kl++gll+pt G+i            ++  ++i+++pq  ++   l +r              +++ +++ +
  EGE27594.1  29 SGVSLNIHAGEMISLIGPNGAGKSTLVKLILGLLTPTHGKI------------TKKVRHISYVPQRFNIPTILPLRAIdllrqanpkrLNQAQKDDIFD 115
                 579**************************************............33455677777774433333333334555566666788889***** PP

                 HSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  91 klglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 kl+++ l  + +    ++LSgG+ qrv l+rall kp+ll+lDEp+
  EGE27594.1 116 KLSITSLLSKQM----HHLSGGETQRVLLVRALLDKPELLILDEPM 157
                 ******999999....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   2.5e-07   0.00021       4      41 ..      43      85 ..      40      97 .. 0.71
   2 !   19.3   0.3   9.4e-07   0.00081     234     299 ..     127     190 ..      95     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.5e-07
      AAA_21  4 liGpNgsGKSnLLdaldllarl.....drdvegltdelsgggg 41
                liGpNg+GKS+L +++ +l         + v++  +++++++ 
  EGE27594.1 43 LIGPNGAGKSTLVKLILGLLTPthgkiTKKVRHISYVPQRFNI 85
                9***************999655555555555555555555554 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 9.4e-07
      AAA_21 234 arelSdG.tkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv..iltTHSp 299
                 +++lS G t+r+  l+ all+ +    ll++DEp  gL+P+  + l+++l++l +   Q+  ++++H+ 
  EGE27594.1 127 MHHLSGGeTQRV-LLVRALLDKP---ELLILDEPMQGLDPESESWLYQFLDQLPE-FLQCamLVVSHDL 190
                 567777734555.8888888766...9***********************99999.6777668899986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   2.6e-09   2.2e-06      22     163 ..      36     176 ..      26     186 .. 0.64

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.6e-09
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy..sa.laqalareellrqlldeaesaeleawrekleealaavpelagaeas 117
                 + +e++ l+G+ G GKs+lv+ +l  l+ +      gk ++  + i+y  +   + ++   + +  l ++  +++ +a ++ + + l++++ l+ + ++
  EGE27594.1  36 HAGEMISLIGPNGAGKSTLVKLILGLLTPT-----HGKITKKVRHISYvpQRfNIPTILPLRAIDLLRQANPKRLNQAQKDDIFDKLSITSLLSKQMHH 129
                 55699*******************777766.....4444444444455442223333334455555555544455555555555666655555555554 PP

      AAA_16 118 rllellkrll.allsrderplvlvlD.dlqwadeaslqllaaLlrlle 163
                     + +r l +++   ++p +l+lD  +q +d++s ++l+++l+ l 
  EGE27594.1 130 LSGGETQRVLlVRALL-DKPELLILDePMQGLDPESESWLYQFLDQLP 176
                 4455555555555555.77866666637**************999876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.2     3e-08   2.6e-05      13      50 ..      29      66 ..      20      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 3e-08
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                +g +++i+  +++ l+Gp+G+GKSTl+  i  lL+p++
  EGE27594.1 29 SGVSLNIHAGEMISLIGPNGAGKSTLVKLILGLLTPTH 66
                567788996669***********************987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.2e-07   0.00019       6     119 ..      39     176 ..      35     201 .. 0.63
   2 ?   -2.1   0.0         5   4.3e+03      43      82 ..     201     248 ..     187     257 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.2e-07
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsst..sskdl.lrellralglelka................erlsseell.eal 82 
                  ++ ++G+ G+GK+tl++ +l  l+    + +  ++++ +++ ++  +  +   l + +llr+ + ++ +                  ++ ++l     
  EGE27594.1  39 EMISLIGPNGAGKSTLVKLILGLLTP--THGKitKKVRHISYVPQRFNipTILPLrAIDLLRQANPKRLNqaqkddifdklsitslLSKQMHHLSgGET 135
                 6899******************9953..33336677777777777777444444444455555554444466667777433334444444444444444 PP

      AAA_22  83 eqalrarav...........ielliiDE.aqhlrseealeeLrsllnl.s 119
                                     +elli+DE +q l  +e  ++L ++l+   
  EGE27594.1 136 --------QrvllvralldkPELLILDEpMQGL-DPESESWLYQFLDQlP 176
                 ........255555555999********77889.7777777777766552 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5
      AAA_22  43 v....fvtlpsstsskdllrellralglelka...erlsseell.eal 82 
                 +    ++++++  s+  ++ e+++ +g ++ +    ++  ++l  e+l
  EGE27594.1 201 IclnkHICCQGVPSQIAIAPEFVQLFGYQAPYihqHTHCDHHLDhEHL 248
                 344667778777888888888888888776665554444455444444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   7.9e-05     0.067      25      50 ..      39      64 ..      30      79 .. 0.78
   2 !    6.9   0.0    0.0043       3.7     134     206 ..     127     197 ..      98     208 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.9e-05
                SEEEEEESTTSSHHHHHHHHHHHCTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAilFvLGe 50
                ++ +++GpNG+GKs l+  il +L  
  EGE27594.1 39 EMISLIGPNGAGKSTLVKLILGLLTP 64
                57789***********9998766655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0043
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSE..EEEE-SSHHHCCC-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQ..fivislreemlekad 206
                 ++ LSgGe + v   L+ A+   ++  l +lDe  + LD +  + + ++l++  +  Q  ++v+s++ + + k +
  EGE27594.1 127 MHHLSGGETQRV--LLVRAL--LDKPELLILDEPMQGLDPESESWLYQFLDQLPEFLQcaMLVVSHDLHWVMKGS 197
                 346899986533..233333..3555699**********************999877633799999877766654 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   7.4e-06    0.0063      93     133 ..      31      72 ..      12      78 .. 0.76
   2 ?   -1.6   0.0       2.7   2.3e+03      48      87 ..     198     238 ..     191     252 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.4e-06
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpelelktgevsek 133
                  ++ +++  +++ l+G+ G+GKStL++ +l+ l+   g++ +k
   EGE27594.1  31 VSLNIHAgEMISLIGPNGAGKSTLVKLILGLLTPTHGKITKK 72 
                  55555555999****************999877777777665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
                  EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTH CS
  RsgA_GTPase  48 epvivlnKiDlleeee.eleelkeelealgyevllvsaktk 87 
                  + vi+lnK  +++    ++    e ++ +gy+  +++++t+
   EGE27594.1 198 RRVICLNKHICCQGVPsQIAIAPEFVQLFGYQAPYIHQHTH 238
                  66899999988877664555666666667777777666654 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.7e-06    0.0083      19      50 ..      35      65 ..      31     129 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.7e-06
      AAA_15 19 idlseeltvliGkNnsGKSsilealdlFlnnk 50
                i+  e +  liG+N++GKS++++++  +l+ +
  EGE27594.1 35 IHAGE-MISLIGPNGAGKSTLVKLILGLLTPT 65
                55666.889****************9998876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   1.4e-05     0.012      22      46 ..      41      65 ..      30      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-05
      AAA_23 22 tlItGpNGaGKTTildAiklaLyge 46
                  ++GpNGaGK+T++  i   L+  
  EGE27594.1 41 ISLIGPNGAGKSTLVKLILGLLTPT 65
                5679***********9998888754 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.0   8.4e-05     0.072       3      88 ..      41     154 ..      39     189 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.4e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC.-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C...........................CH CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqga.fklvFflslrelsrsgnarsladllfsqlpepaapvse...........................vw 73 
                 + l G++G GK+tL++ +  ++   + +  + ++++ ++++r        ++ +dll++  p+   + ++                           v 
  EGE27594.1  41 ISLIGPNGAGKSTLVKLILGLLTPTHGKITKkVRHISYVPQRFNIPTILPLRAIDLLRQANPKRLNQAQKddifdklsitsllskqmhhlsggetqrVL 139
                 6799************99988875554443337888888877544444446999999999999888888888888886555555555555555554555 PP

                 HHHCCSCCCEEEEEE CS
       NACHT  74 avllelperlLlilD 88 
                  v++ l +  LlilD
  EGE27594.1 140 LVRALLDKPELLILD 154
                 555555555557776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0052       4.5      44      64 ..      35      55 ..      24      75 .. 0.87
   2 ?    6.4   0.0    0.0078       6.7     104     137 ..     143     175 ..     115     191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0052
   IstB_IS21 44 iekkenivllGpsGvGKshla 64
                i++ e i l+Gp G+GKs l 
  EGE27594.1 35 IHAGEMISLIGPNGAGKSTLV 55
                6778999***********885 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0078
   IstB_IS21 104 krllkvdllilDdlgllpldqaeaellfeviekr 137
                 + l k++llilD+  ++ ld ++++ l++ +++ 
  EGE27594.1 143 ALLDKPELLILDE-PMQGLDPESESWLYQFLDQL 175
                 457899******9.5899***********99985 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00059       0.5      26      88 ..     123     172 ..     110     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00059
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 ls+++  lSGGe+q ++ +      +al+++       ++l++LDE  ++lD+es + l ++l
  EGE27594.1 123 LSKQMHHLSGGETQRVLLV------RALLDK-------PELLILDEPMQGLDPESESWLYQFL 172
                 7888999999999655433......344444.......8999999999999999877776666 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.9e-05     0.025       2      51 ..      41      87 ..      40     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.9e-05
                EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE-.------EEEEEE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfyteevr.eggrrigFkivd 51
                + + Gp G GK+Tlvk +l ll     + +G +t++vr        F+i +
  EGE27594.1 41 ISLIGPNGAGKSTLVKLILGLL----TPTHGKITKKVRhISYVPQRFNIPT 87
                5678******************....799********93344455666655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     5e-05     0.043      23      61 ..      39      77 ..      28      94 .. 0.81
   2 ?   -3.0   0.0       4.6   3.9e+03     111     120 ..     171     180 ..     170     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5e-05
  Mg_chelatase 23 HnlllvGppGsGKtmlakrlpsllpplseeealevakia 61
                    + l+Gp G+GK+ l k + +ll+p + + + +v++i+
    EGE27594.1 39 EMISLIGPNGAGKSTLVKLILGLLTPTHGKITKKVRHIS 77
                  45789********************99887777766665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.6
  Mg_chelatase 111 fLDElpefkr 120
                   fLD lpef +
    EGE27594.1 171 FLDQLPEFLQ 180
                   9******976 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014      0.12      30     188 ..      35     188 ..      26     190 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
      AAA_25  30 lpagelallaGapgtGKttlaldlalava...tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal.......rddarllvldlagv.eslpLf 117
                 + age + l+G+ g+GK+tl+  l l ++    Gk  ++  +++++  +   +  +   l+ R+  +++++       +        + ++  ++l ++
  EGE27594.1  35 IHAGEMISLIGPNGAGKSTLVK-LILGLLtptHGK-ITK--KVRHISYVPQRFNIPT-ILPLRAIDLLRQAnpkrlnqA--------QKDDIfDKLSIT 120
                 5689***************974.444444142333.333..4577777777888888.888888888887755544431........222222222222 PP

      AAA_25 118 ..akdrggtlltadvda..leaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                    +++ ++l  +++++  l +a+ +  +++l+++D    + g d++s+s   +++++l ++   +++a l+v H
  EGE27594.1 121 slLSKQMHHLSGGETQRvlLVRALLD--KPELLILDE--PMQGLDPESESWLYQFLDQLPEF---LQCAMLVVSH 188
                 00223333333333333004444444..388888884..45566777777777777777776...7888888877 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012       0.1      17      44 ..      36      63 ..      25     124 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
                CHTEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE 17 algdvilLeGdLGaGKTtlvrglakalg 44
                ++g++i L G+ GaGK+tlv+ ++  l 
  EGE27594.1 36 HAGEMISLIGPNGAGKSTLVKLILGLLT 63
                33889****************9998773 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00017      0.15       2      21 ..      41      60 ..      40     182 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
      AAA_33  2 vllvGlpGsGKstlaerllk 21
                + l+G++G+GKstl++ +l 
  EGE27594.1 41 ISLIGPNGAGKSTLVKLILG 60
                679************97765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00075      0.64      22      52 ..      40      70 ..      32     161 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00075
                EEEEEESTTSSHHHHHHHHCCSHCCCCCCBT CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnksdevegrFd 52
                +++l G  G GK+tl+k il  +  ++g+  
  EGE27594.1 40 MISLIGPNGAGKSTLVKLILGLLTPTHGKIT 70
                799**************99876555555433 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00038      0.33       2      22 ..      41      65 ..      40      97 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00038
                EEEEESTTSSHHHHHHHHHT....S CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg....e 22
                + ++G   +GKStL++ ++g    +
  EGE27594.1 41 ISLIGPNGAGKSTLVKLILGlltpT 65
                789***************9833331 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00052      0.44       4      23 ..      43      62 ..      40      76 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00052
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                L+Gp G gKs+l++ ++ +l
  EGE27594.1 43 LIGPNGAGKSTLVKLILGLL 62
                9**************99988 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00044      0.37       3      22 ..      43      62 ..      41     166 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00044
                EESSTTSSHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakel 22
                l+Gp G GK++l+k +   l
  EGE27594.1 43 LIGPNGAGKSTLVKLILGLL 62
                89*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.49u 0.32s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 1827.80
//
Query:       EGE27595.1  [L=171]
Description: Fur family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-09   37.6   0.0      2e-09   37.6   0.0    1.8  2  FUR       Ferric uptake regulator family
     0.0026   17.3   0.0     0.0043   16.6   0.0    1.3  1  HTH_24    Winged helix-turn-helix DNA-binding
     0.0045   16.8   0.0      0.016   15.1   0.0    1.8  2  HTH_5     Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.031   14.1   0.0    1.6  1  HTH_IclR  IclR helix-turn-helix domain
       0.03   14.2   0.0        0.2   11.6   0.0    2.1  2  TrmB      Sugar-specific transcriptional regulator TrmB
      0.059   13.3   0.0       0.71    9.9   0.0    2.1  1  TBPIP     TBPIP/Hop2 winged helix domain
        2.4    8.8  12.5        3.9    8.1   0.1    3.1  3  Whib      Transcription factor WhiB


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -11.2   8.4         7   1.8e+04      77      80 ..       6       9 ..       2      15 .. 0.45
   2 !   37.6   0.0   7.8e-13     2e-09       1     119 [.      33     160 ..      33     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: -11.2 bits;  conditional E-value: 7
                SEEE CS
         FUR 77 hhdh 80
                hh h
  EGE27595.1  6 HHCH 9 
                3333 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 7.8e-13
                 HTTHCHHHHHHHHHHHHHHHSSSBEHHHHHHHHH........HTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS...SSSEEEEEETTT-- CS
         FUR   1 eaglklTkqRekilevlekseehlsaeevykelk........eedpeislaTVYrtLklleeaglvkelefedgesryelak...kehhdhlicekCgk 88 
                 ++g + T+ Re++ +++ + e+ + a ++  +l+         ++ +i   TVYr L++l e+gl+++l+    +++   ++   ++  + lic+ C k
  EGE27595.1  33 KRGARFTPLREEVFQLILQAEKPMGAYDLISALQqsrlsdanAKKTNIAPPTVYRSLEFLIEEGLIHQLSSM--NAYVPCCHprdRHAAAFLICRCCQK 129
                 5799******************99999999888743333333467899999***************999877..34444433433666778******** PP

                 EEEE--HHHHHHHHHHHHHTT-EEEEEEEEE CS
         FUR  89 viefkddeiekiqeeiaekegfklvshrlel 119
                 v+e ++  ++ + + +a++ +f +++ ++el
  EGE27595.1 130 VEECSNLPVDSMMNFAAKDANFLVERSTIEL 160
                 **********************999888875 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.7e-06    0.0043      24      47 ..      75      98 ..      75      99 .. 0.98

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.7e-06
      HTH_24 24 AerlglSpstvnrrlkrLeeeGlI 47
                A+++++ p+tv r l+ L+eeGlI
  EGE27595.1 75 AKKTNIAPPTVYRSLEFLIEEGLI 98
                89*********************9 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.1   2.8e+03      12      28 ..      52      68 ..      47      69 .. 0.79
   2 !   15.1   0.0   6.2e-06     0.016      22      46 ..      75      99 ..      75     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
                TTSSEEHHHHHHHHTS- CS
       HTH_5 12 aegelcvcelaeelgls 28
                ae+++ + +l  +l+ s
  EGE27595.1 52 AEKPMGAYDLISALQQS 68
                46888899999998877 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 6.2e-06
                HHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 22 aeelglsqstvShHLkkLreaGLVe 46
                a+++++ ++tv + L +L e+GL++
  EGE27595.1 75 AKKTNIAPPTVYRSLEFLIEEGLIH 99
                6789*******************96 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05     0.031      25      50 ..      75     100 ..      45     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                 HHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  25 ArrtglpkStvhRlLqtLvelGyveq 50 
                 A++t ++++tv+R L  L+e+G++ q
  EGE27595.1  75 AKKTNIAPPTVYRSLEFLIEEGLIHQ 100
                 889********************998 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.39     1e+03      12      34 ..      44      67 ..      38      71 .. 0.79
   2 ?   11.6   0.0   7.7e-05       0.2      29      55 ..      75     101 ..      71     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.39
                CHCHHHH.HHCCCHHCHHCCCTTS CS
        TrmB 12 kvYlaLl.klgpatadeiaeelgv 34
                +v++ +l +++p+ a+++ ++l  
  EGE27595.1 44 EVFQLILqAEKPMGAYDLISALQQ 67
                678888889999999999888765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.7e-05
                 CCCTTSSCHCHHHHHHHHHHCTSEEEE CS
        TrmB  29 aeelgvprskvYevLrsLedkGlVere 55 
                 a+++++  ++vY++L+ L++ Gl++  
  EGE27595.1  75 AKKTNIAPPTVYRSLEFLIEEGLIHQL 101
                 78999******************9875 PP

>> TBPIP  TBPIP/Hop2 winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00028      0.71       5      38 ..      44      78 ..      42     101 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00028
       TBPIP  5 lvleylqeqnrPfsvqdvvanlqk.klgKtavqka 38
                 v++++ +  +P+++ d +++lq+ +l+ +++ k+
  EGE27595.1 44 EVFQLILQAEKPMGAYDLISALQQsRLSDANAKKT 78
                6889999999************9996665555442 PP

>> Whib  Transcription factor WhiB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0015       3.9       4      32 ..       5      33 ..       3      63 .. 0.84
   2 ?    3.2   5.0     0.052   1.3e+02      19      45 ..     113     139 ..     100     145 .. 0.81
   3 ?    1.4   0.1      0.19   4.9e+02      21      34 ..     155     168 ..     138     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0015
        Whib  4 raaCrgedpelffpekgdreeeAkavCar 32
                + +C++   + + +++++r ++Aka Ca+
  EGE27595.1  5 HHHCHSHHHDSYHQNPEQRLADAKAYCAK 33
                568************************75 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.052
        Whib  19 kgdreeeAkavCarCpVrreCleeale 45 
                 ++dr ++A  +C+ C+  +eC +  ++
  EGE27595.1 113 PRDRHAAAFLICRCCQKVEECSNLPVD 139
                 34899999*************887655 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.19
        Whib  21 dreeeAkavCarCp 34 
                 +++ e k vC+ C 
  EGE27595.1 155 RSTIELKGVCRDCH 168
                 77889999*****5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1324.72
//
Query:       EGE27596.1  [L=296]
Description: zinc ABC transporter substrate binding protein ZnuA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-25   90.7   0.0    1.3e-25   90.2   0.0    1.2  1  ZnuA      Zinc-uptake complex component A periplasmic
  ------ inclusion threshold ------
      0.091   12.6   0.0       0.25   11.1   0.0    1.7  2  DUF2064   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   1.5e-29   1.3e-25       1     256 []      40     292 ..      40     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 1.5e-29
                 EEESSHHHHHHHHHHHGGGCEEEECS-TTSTTTT----HHHHHHHHHSSEEEESSTTTSGTHHHHHHHHTT.........CCCEEEEETTTTCCSEBCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxx RF
        ZnuA   1 VvattsplgdlvrqvaGdrvevtvLvppgadpHsyeptprdvrklaeAdllvynglelEtwldkllasssq.........atrvevidlsegveeeeee 90 
                 V ++ +pl+ l  +v   + + +vL+ +g   H+ +++p++v+ ++++d +++ g  lE+ l k la++++          +r+ +    +g ++++++
  EGE27596.1  40 VSVSNYPLALLSHEVTQGQHDAKVLLTAGDVGHHGSLSPSKVKLVEDSDYVIWFGESLEQNLVKTLADAPNaisllqfnaFNRLPLR-HIDG-SQKPDS 136
                 67899***********9999***************************************9999999888763444433331122222.2246.578889 PP

                 SESTGGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHHHHTT-EEEEEESSSSS....HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xx RF
        ZnuA  91 eDpHiWlspknaiamveniadaLveadpanadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgylarayglevagiagiste....aa 185
                 eD HiWl+p+na+a+v+++      a+p+++++y++na ++++++++  + ++          + +  +hdaf+y ++a gl++ag+ + ++     a+
  EGE27596.1 137 EDAHIWLDPENAKAIVRALSVVHGHANPEHKAKYAQNATDFERRMDKAVQSVQVNGM------TPYWAYHDAFQYIEQAAGLKFAGALTPDHHlnpkAS 229
                 9********************************************998888875544......3589******************98655555866677 PP

                 HHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHHHT.-EEEEE-STSSSTSTTSTTSHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA 186 qiaalieeikeagvkaifveplaspklaetlaeeag.vkvatlysldslgdegsaetYidmmranleslkea 256
                 q ++l ++ + +   ++ ++ +    + + ++++ g v+v  ++  d  g +   e++i+   a++++l+++
  EGE27596.1 230 QFKRLNQT-RPQPFMCLASQGV----VSDGIKNKLGnVNVTIIQE-DMSGMG---EDFISAWVAQVNALQTC 292
                 77776655.3444444444334....4444555554377655666.443333...58999988888888876 PP

>> DUF2064  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.8e-05      0.25       9      61 ..     135     193 ..     128     197 .. 0.87
   2 ?   -3.5   0.0      0.94   8.4e+03      63      88 ..     263     288 ..     253     294 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.8e-05
                 SSSEEEEEE----TTHHHHHH......HH-TTSEEEE--SSSHHHHHHHHHHHHHHTT- CS
     DUF2064   9 daaevvlaldgaldkalaeql......alakglevlpQqggdlgeRlarafdrafeage 61 
                 d+ + +++ld++++ka  ++l      a++++ + ++Q+  d+  R+ +a++++  +g+
  EGE27596.1 135 DSEDAHIWLDPENAKAIVRALsvvhghANPEHKAKYAQNATDFERRMDKAVQSVQVNGM 193
                 667899************999*****9999999999****************9965555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.94
                 EEEEE-SS-TT--HHHHHHHHHHTTT CS
     DUF2064  63 pvlliGsDcpqltaalleqAfeaLee 88 
                 +v +i  D+  + ++ +++ +++ ++
  EGE27596.1 263 NVTIIQEDMSGMGEDFISAWVAQVNA 288
                 67788888888888877776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2215.53
//
Query:       EGE27597.1  [L=132]
Description: hypothetical protein EA1_01882 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-13   50.9  12.1      2e-13   50.6  12.1    1.1  1  ATP-synt_I  ATP synthase I chain
     0.0022   17.9   9.5     0.0032   17.4   9.5    1.2  1  DUF4271     Domain of unknown function (DUF4271)
  ------ inclusion threshold ------
       0.27   11.4   4.7         11    6.2   3.4    2.4  2  TMEM223     Transmembrane protein 223
       0.91    9.6   4.6        1.7    8.8   4.6    1.6  1  GWT1        GWT1


Domain annotation for each model (and alignments):
>> ATP-synt_I  ATP synthase I chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6  12.1   4.4e-17     2e-13       7     100 .]      22     118 ..      15     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 4.4e-17
  ATP-synt_I   7 lvllavlalgwllt....gsas.valsallGglisvlpfalfalrvfrfsgalarkkkkivrslylgeairlaltiallilalklvkelsllallvGll 100
                 +v+l v+++g++l+    ++ + +a+++ +G+li+++ +++f + ++ ++ga ++  ++i+ + ylg++i++a t+al+++++  ++++s +++++G++
  EGE27597.1  22 WVVLGVMIFGLVLSyvmaDGDRlIAKGLSIGALIAFIGQLIFTRIAYHTVGAKHA--RQIMLNTYLGFVIKWATTLALFAFVFLKIQPISTVSVIIGYI 118
                 33333333333333222333337***********************888886666..****************************************96 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   9.5   7.1e-07    0.0032      57     174 ..      20     131 ..       4     132 .] 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.1e-07
     DUF4271  57 ltclllglllylllsefgslfgsylassllllliiflilllylllKlllykllgwlFfdkkkirqwifsylsylsllglllfplvlllvyfplssqill 155
                 + +++lg++++ l+ ++ +          l+   ++++ l+ ++ +l++ ++  ++   k   + ++++yl +++ +++ l +++++++ ++++s++++
  EGE27597.1  20 QIWVVLGVMIFGLVLSYVMAD-----GDRLIAKGLSIGALIAFIGQLIFTRIAYHTVGAKHARQIMLNTYLGFVIKWATTLALFAFVFLKIQPISTVSV 113
                 444555555554444433333.....455666667778888999******************************************************* PP

     DUF4271 156 ililiillliklllllyks 174
                 i++ iil+++  l  l+k+
  EGE27597.1 114 IIGYIILIISQNLV-LIKM 131
                 **********9999.7765 PP

>> TMEM223  Transmembrane protein 223
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.4    0.0023        11      68     113 ..      49      94 ..       1     113 [. 0.81
   2 ?   -2.5   0.0       1.1   4.9e+03      63      77 ..     108     122 ..     102     126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0023
     TMEM223  68 llvgvlilllgllfplRsvkkvvllkggktveivTyapfgkkrsfe 113
                 l +g+li+++g l+ +R   + v  k ++++ ++Ty  f +k+ ++
  EGE27597.1  49 LSIGALIAFIGQLIFTRIAYHTVGAKHARQIMLNTYLGFVIKWATT 94 
                 6789999999999999999999999999999999998888777655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
     TMEM223  63 ltlicllvgvlilll 77 
                 ++++++++g++il++
  EGE27597.1 108 ISTVSVIIGYIILII 122
                 677888888888876 PP

>> GWT1  GWT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.6   0.00037       1.7      44      99 ..      74     129 ..       3     131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00037
        GWT1  44 kkesketlkllikllllsilllllllllelyvefvSRrlaNlpYvlwvvalnltll 99 
                 k+ ++ +l++   +++  + +l+l+ ++ l+++++S + + ++Y+++++++nl+l+
  EGE27597.1  74 KHARQIMLNTYLGFVIKWATTLALFAFVFLKIQPISTVSVIIGYIILIISQNLVLI 129
                 334455667777777777777777788899999*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 920.84
//
Query:       EGE27598.1  [L=289]
Description: F0F1 ATP synthase subunit A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-57  192.3  20.8    1.2e-56  192.0  20.8    1.1  1  ATP-synt_A  ATP synthase A chain


Domain annotation for each model (and alignments):
>> ATP-synt_A  ATP synthase A chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0  20.8   6.6e-61   1.2e-56       1     211 []      50     281 ..      50     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: 192.0 bits;  conditional E-value: 6.6e-61
                 HHHHHHHHHHHHCCC.CCSS.T.TTTSHHHHHHHHHHHHHHHHHHHHCTSSSTXHHHHHHHHHHHHHHHHHCCHCCSST.................... CS
  ATP-synt_A   1 vlttlivllilllllllatrkkkkklpgklqnlvealvefvdnlvksvigkkkkkkffpliltlflfilvsNllgliPg.................... 79 
                 +l+++ + +++l l++++ rk+++++p+klq++ve++v+fvdn v+++ +    k ++pl lt+f++i+++Nl++l+P+                    
  EGE27598.1  50 MLWSIGLGIFFLALFWAVGRKATSGVPTKLQAFVEMIVDFVDNSVRESYNG-PSKLIAPLSLTIFVWIFLMNLMDLVPIdwmpslaqwvgslmghdphh 147
                 577888888888999999*9999999***********************63.5689*********************7777777888888888888888 PP

                 ...TTTTTCHHHHHHHHHHHHHHHHHHHHHHHHGG..GGCHHH.......SS..SCCCCHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_A  80 ...lraatadinvtlalAlivfllvlilgikkkglkgyfkklf.......vp..plllvplllpielisefarpvsLalRLfgNifAGelllallagll 166
                     + +t+d n+tl++A+ vf+l++ +g+k+kg++g++ +++        p  + +l+p++l++e+++ +a+p+sL+lRLfgN++AGel+++l+a++ 
  EGE27598.1 148 vyfKIVPTTDPNITLGMAIGVFFLIIGFGLKYKGVGGFIAEFTlhpfsakNPilQAILIPINLVLEIVTLLAKPISLGLRLFGNMYAGELIFILIALMP 246
                 8878889***********************************877655552278999**************************************9442 PP

                 CCCTGCCCTTCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_A 167 llllllavllsvli.lllavlllllelfvgfiQAfvFtlLtlvYis 211
                            ++i ++l+v++++++++v+++QAfvF++Lt+vY+s
  EGE27598.1 247 -----------FWIqWALSVPWAIFHILVITLQAFVFMMLTIVYLS 281
                 ...........22335689*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2114.80
//
Query:       EGE27599.1  [L=81]
Description: F0F1 ATP synthase subunit C [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-10   38.7   9.0    1.1e-09   38.4   9.0    1.1  1  ATP-synt_C  ATP synthase subunit C


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   9.0   6.4e-14   1.1e-09       1      60 []      11      74 ..      11      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 6.4e-14
                HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSG....HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  1 lgaglavGlsalgsGigiGkagsagiravarnp....klftksliilafaeaialygLivalil 60
                l+++l +G +al++Gig +++g++ ++++ar+p    +l+tk++i++++  a+ ++g+ +a++l
  EGE27599.1 11 LAVALLIGAGALATGIGFAILGGKFLESTARQPelgsQLQTKMFIVAGLLDAVPMIGVGIAMLL 74
                79************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 657.34
//
Query:       EGE27600.1  [L=155]
Description: F0F1 ATP synthase subunit B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-32  110.4  15.7    8.1e-32  110.1  15.7    1.1  1  ATP-synt_B  ATP synthase B/B' CF(0)
  ------ inclusion threshold ------
       0.12   12.4  21.9        0.2   11.7  19.4    2.1  2  DivIVA      DivIVA protein
        5.1    6.9  15.3        6.3    6.6  15.3    1.1  1  HrpE        HrpE/YscL/FliH and V-type ATPase subunit E


Domain annotation for each model (and alignments):
>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1  15.7   1.4e-35   8.1e-32       1     132 []       5     136 ..       5     136 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 1.4e-35
  ATP-synt_B   1 tlvvnliallilvgllikfawkplkkvLdkReekIadeiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkes 99 
                 t++ +lia++i+v++++kf+w+pl +++++R++kI+++++ Ae++++++  ++++ e++ + A+ eAa ii+ A+k a++  e+++++a+ e er++ +
  EGE27600.1   5 TIFGQLIAFAIFVLFCMKFVWPPLIGAINERQRKIEEGLNAAEKAKADLVSAEKQVEAEFAAAKTEAASIIERANKTANQMIEDAKEQARLEGERIIVA 103
                 7999*********************************************************************************************** PP

  ATP-synt_B 100 AaaeIeqekdralaeLreqvvalavqiaeklle 132
                 A+a +eqe ++ +++Lr qv++lav +aek+l+
  EGE27600.1 104 AHAAVEQEAAQTREQLRSQVASLAVLGAEKILQ 136
                 *******************************96 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  19.4   3.3e-05       0.2      48     110 ..      32      94 ..      28     126 .. 0.83
   2 ?   -0.2   2.0      0.16   9.8e+02      69     103 ..     100     136 ..      97     153 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
                 HHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  48 vkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeak 110
                 ++e ++k++e  ++ e+ k  lv+a++  e   a+ak+ea  ii+ A+k+a++++e+a+e+a+
  EGE27600.1  32 INERQRKIEEGLNAAEKAKADLVSAEKQVEAEFAAAKTEAASIIERANKTANQMIEDAKEQAR 94 
                 788899999999999999999***********************************9998875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
                 XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXX CS
      DivIVA  69 lvvaqetaeevkanakkea..eliikeAekkaekive 103
                 ++va ++a e  a++++e+  +++ + A   aeki++
  EGE27600.1 100 IIVAAHAAVEQEAAQTREQlrSQVASLAVLGAEKILQ 136
                 4444444444444444443113334444455555554 PP

>> HrpE  HrpE/YscL/FliH and V-type ATPase subunit E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  15.3    0.0011       6.3      22     126 ..      50     154 ..      36     155 .] 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0011
        HrpE  22 rreqlaeslrarellaeArlqAeqllaqarekaeellevaveqAeaqFWeqAnalLrglqqeRealeeqlltaveqLLsdalarlLdetplaeRasALl 120
                 +++ + ++++ ++ +a A+  A +++++a++ a++++e a eqA  +  +   a   ++ qe ++ +eql ++v +L     +++L++  + + +  +l
  EGE27600.1  50 KADLVSAEKQVEAEFAAAKTEAASIIERANKTANQMIEDAKEQARLEGERIIVAAHAAVEQEAAQTREQLRSQVASLAVLGAEKILQDKINEQEHASML 148
                 56777788888888999*********************9*9*999999999999999999******************9999****9999999999999 PP

        HrpE 121 RqLlks 126
                  qL+++
  EGE27600.1 149 EQLAAK 154
                 999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2355  (0.131351); expected 358.6 (0.02)
Passed bias filter:                      770  (0.0429472); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1187.99
//
Query:       EGE27601.1  [L=182]
Description: F0F1 ATP synthase subunit delta [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-55  186.2   1.3      6e-55  186.0   1.3    1.0  1  OSCP      ATP synthase delta (OSCP) subunit
  ------ inclusion threshold ------
      0.059   13.9   0.5        1.3    9.6   0.2    2.2  2  DUF3106   Protein of unknown function (DUF3106)


Domain annotation for each model (and alignments):
>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0   1.3   6.7e-59     6e-55       1     172 []       7     180 ..       7     180 .. 0.98

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 6.7e-59
        OSCP   1 iarrYAkAlfelAkekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfke....klseavknflkllaenkRlalLpeiaeefeel 95 
                 +ar+YAkA+f++Ake++a+ ++e++l  + + +++++++a+ll+npa+sa++k+d+l +  ++    ++s+a++nf+k+lae++Rlal+pei +++ +l
  EGE27601.1   7 LARPYAKAAFDYAKEHNAISNWEAFLLIA-SDVVRNEDFASLLNNPAISAQQKADILMDAYGKltaeQASQALTNFIKQLAEHDRLALMPEITAHYTKL 104
                 69************************888.9999***********************9999999999******************************** PP

        OSCP  96 laeargiveaeVtsavpLtdeqlekleaalakklgkkkvkleekvdpsliGGvvvkvgdkviDgSvkgkLeklkeqL 172
                 + ++ ++v+a+Vtsa+pLt++q +kl+++la ++g+  v l+e+vdp+l+GG+++kvgdk+ DgSv+gkL++lk+qL
  EGE27601.1 105 KSQELKQVDAYVTSAFPLTEAQSKKLQERLALSTGS-IVILHESVDPNLLGGATIKVGDKFTDGSVRGKLKQLKTQL 180
                 ************************************.6*************************************98 PP

>> DUF3106  Protein of unknown function (DUF3106)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00014       1.3      43     101 ..      54     111 ..      40     114 .. 0.82
   2 ?    9.5   0.2   0.00015       1.3       4      71 ..      69     135 ..      66     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00014
     DUF3106  43 eeqkrlqermeewakLspeqreqarenyqklkqLppeereelrek.weeyqkLppeerkk 101
                   q+++   m+++ kL+ eq +qa  n+  +kqL+ ++r +l  +   +y kL+ +e k+
  EGE27601.1  54 SAQQKADILMDAYGKLTAEQASQALTNF--IKQLAEHDRLALMPEiTAHYTKLKSQELKQ 111
                 578999999***************9998..789999999887655156799998887666 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00015
     DUF3106   4 LspeqrqaLaplaeewnelspeqrekll.eiaerykkltpeeqkrlqermeewakLspeqreqarenyq 71 
                 L++eq +  + l +  ++l ++ r  l+ ei+++y kl+ +e k++ + +++   L+++q ++++e+++
  EGE27601.1  69 LTAEQAS--QALTNFIKQLAEHDRLALMpEITAHYTKLKSQELKQVDAYVTSAFPLTEAQSKKLQERLA 135
                 5555533..234445566777777777779********************9999999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1486.80
//
Query:       EGE27602.1  [L=514]
Description: F0F1 ATP synthase subunit alpha [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-74  249.1   0.1    4.9e-74  248.6   0.1    1.3  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    7.4e-47  158.8   0.8    1.2e-46  158.1   0.8    1.4  1  ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal doma
    3.1e-14   53.3   1.4    6.6e-14   52.2   1.4    1.6  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
    1.2e-05   25.4   0.4    3.3e-05   24.0   0.4    1.8  1  HAS-barrel     HAS barrel domain
    0.00052   19.4   0.1     0.0012   18.3   0.1    1.6  1  ATPase         KaiC
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.24   11.3   0.0    1.5  1  ATPase_2       ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.6   0.1   1.7e-77   4.9e-74       1     213 []     150     376 ..     150     376 .. 0.97

  Alignments for each domain:
  == domain 1  score: 248.6 bits;  conditional E-value: 1.7e-77
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHH.HHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvis.qslskqsnsddaiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlA 97 
                  G +++D+++pi++Gqr+li+g++++Gkt+++ ++++ q+ns   ++yv+iG++++++a+v+++++e++++++t++v+++++ep+a++++++y g+t++
   EGE27602.1 150 GYKAVDTMIPIGRGQRELIIGDRQTGKTALAiDAIIAQKNSGIKCVYVAIGQKRSTIANVVRKLEETGALAYTTVVVASASEPAALQYIAPYSGCTMG 247
                  889****************************99*****998889****************************************************** PP

                  HHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEE.............TSSEEEEEEEEEEE-GGCSTTSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  98 EyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagka.............pdrtGsvtivaavspaggDfsdpvtta 182
                  Eyfrd+g+++l+++d+ls++a A+r+isl+l+++p++++yp+++++ +++l+ERa ++             + +tGs+t+++++++++gD+s+ v+t+
   EGE27602.1 248 EYFRDRGEDALIVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERASRVnadyveaftngevKGKTGSLTALPIIETQAGDVSAFVPTN 345
                  **********************************************************8888888887777777************************ PP

                  HHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 183 tlgitdgfivLdkklaqrkhfPainvlvSvS 213
                  +++itdg+i+L+++l++++++Pa+n ++SvS
   EGE27602.1 346 VISITDGQIFLESNLFNSGIRPAVNAGISVS 376
                  *****************************99 PP

>> ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1   0.8   4.1e-50   1.2e-46       1     126 []     383     508 ..     383     508 .. 0.99

  Alignments for each domain:
  == domain 1  score: 158.1 bits;  conditional E-value: 4.1e-50
  ATP-synt_ab_C   1 QtkamkkvagsLklelaqYrEleaFaqFgsdLDeatkkqLerGerlvelLkQkqysplsveeqviilyaatngllddipvekvkefekelleylee 96 
                    Qtk++kk++g ++++laqYrEl+aFaqF+sdLD+atk+qLe+G r++el+kQkqy+p+s+++q++++ya ++g+l+d+pvek+ +fe+++l+yl++
     EGE27602.1 383 QTKIIKKLSGGIRTALAQYRELAAFAQFASDLDDATKQQLEHGVRVTELMKQKQYAPMSIADQAAVIYASNEGYLSDVPVEKIGAFEEAFLRYLRN 478
                    9*********************************************************************************************** PP

  ATP-synt_ab_C  97 ekkeileeieekkklsdeleeklkeaikef 126
                    +++++++ei+e+ +++d++e++lk+a+++f
     EGE27602.1 479 DHATLMSEIDETANYNDDIESRLKAAVESF 508
                    **************************9987 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   1.4   2.2e-17   6.6e-14       6      69 .]      30      93 ..      26      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.2e-17
                   TTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  6 GpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   G +v+v +gi +++g+ +a+ +e+ ef+ +++g+alnl++d+V+++v+g++  l++G++ + TG
     EGE27602.1 30 GVIVSVSDGIVQIHGLEEAMYGEMIEFEGGVYGMALNLEQDSVGAVVLGEYLSLQEGQKAYCTG 93
                   99************************************************************98 PP

>> HAS-barrel  HAS barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.4   1.1e-08   3.3e-05       8      92 .]      33     110 ..      27     110 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.1e-08
  HAS-barrel   8 stssslifrvegskdvkvGeyVeielpdgeivlGmvtdirrgnselsndlalvlsleeleeangddevalatedt....................gvkv 86 
                 +++s++i+ ++g+++ ++Ge++e+e+     v+Gm +++++                       d+++a++++++                    g ++
  EGE27602.1  33 VSVSDGIVQIHGLEEAMYGEMIEFEGG----VYGMALNLEQ-----------------------DSVGAVVLGEYlslqegqkayctgrilevpvGPEL 104
                 5779*********************55....**********.......................99999999999999999999999999999999999 PP

  HAS-barrel  87 lGeved 92 
                 lG+v d
  EGE27602.1 105 LGRVVD 110
                 999976 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.9e-07    0.0012       3      70 ..     149     213 ..     147     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.9e-07
      ATPase   3 tgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenaksl 70 
                 tg +  D+++   i +g+  li G+  tGKt +a   +i + ++ g ++v+v++ ++ + + + +++l
  EGE27602.1 149 TGYKAVDTMI--PIGRGQRELIIGDRQTGKTALAIDAIIAQKNS-GIKCVYVAIGQKRSTIANVVRKL 213
                 6666677776..56688899*********************666.**********9998777666655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.2e-05      0.24      23      91 ..     166     235 ..     152     279 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.2e-05
    ATPase_2  23 yfiYGpegsGKtaLlkeiienledkdkyviyyialr.eesiskldefieeeeekkklekalgiavpkael 91 
                  +i G ++ GKtaL   +i  +++++ + +y+   + ++ i+++ +++ee+    + + ++++a + a+l
  EGE27602.1 166 ELIIGDRQTGKTALAIDAIIAQKNSGIKCVYVAIGQkRSTIANVVRKLEETGALAYTTVVVASASEPAAL 235
                 5799**********999999999********976651567899999999887777666666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.36
# Mc/sec: 4254.56
//
Query:       EGE27603.1  [L=290]
Description: F0F1 ATP synthase subunit gamma [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-94  314.2   1.0    1.1e-93  314.1   1.0    1.0  1  ATP-synt  ATP synthase


Domain annotation for each model (and alignments):
>> ATP-synt  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.1   1.0   5.9e-98   1.1e-93       1     278 [.       3     288 ..       3     289 .. 0.94

  Alignments for each domain:
  == domain 1  score: 314.1 bits;  conditional E-value: 5.9e-98
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHCEHHHHTTT..SS.G.S.SSEEEEEEE--SSSSSTTHHHHHHHHH.H CS
    ATP-synt   1 slkeikrRiksvkstkkItkAmkmVaaaklrkaqealeaarpyaekleevlealakreeeekhpl.lkeeekkvllivitSDrGLcGgfNsnvikka.e 97 
                 slkei+ ++ s+kst+kIt+Am+mVaa+k+r+aqe++e  rpy++++++v+++l++++++ khp+ +++++++v+++v+tSDrGL+Gg+N n++k++ +
  EGE27603.1   3 SLKEIRAKVTSIKSTQKITRAMQMVAASKMRRAQERMELGRPYSDGIRRVISHLVQAQSDYKHPYmINRPVNRVGFVVVTSDRGLAGGLNINLFKNLlK 101
                 69****************************************************9999999***966667***************************55 PP

                 HHHHHHHTTT.ETEEEEESHHHHHHH.HHSS.EHHTTCE-TSS--HHHHHHHHHHHHSHHHTTSBSEEEEEEEEECCTSEEEEEEEEESST...HC... CS
    ATP-synt  98 klieelkkeg.evklvvvGkkgreyf.krkvevqleftgvskkptfeeaseiaeeildlyeegeideveivynkfksaisqeptvekllplekeee... 191
                 ++ ++ ++++ e+++ v+G kg  +f + + +v+  +t+ +++p +e+++  ++++ld+y +g++d++++vyn+f++a+ q+p+ve+++pl ++e    
  EGE27603.1 102 TV-KSYQEQSvEIEFAVIGAKGVGFFkNFGGRVTSAVTDYGDNPALEQINTPVQTMLDDYLNGKLDRIYLVYNQFINAMAQKPVVEQIVPLAESEFddt 199
                 54.4556677789*************6668899888999999************************************************766555788 PP

                 ..S..SSTSEESS.HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ATP-synt 192 ..kkekseyefepdeeevleellpeylasliyrallesaasEqaaRmtaMdnAtknakelidkltleyNraRQaaITqELieIvsGaeA 278
                   ++++++y++epd ++++++ll +y++s +y+++ e+ asEq+aRm+aM++At+na++li++l+l yN++RQaaIT+E++eIv+Ga+A
  EGE27603.1 200 elQAHSWDYIYEPDTKTLIDSLLLRYIESVVYQSVRENIASEQSARMVAMKAATDNAGNLIKDLQLVYNKLRQAAITREISEIVGGAAA 288
                 88*************************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2147.26
//
Query:       EGE27604.1  [L=111]
Description: hypothetical protein EA1_01917 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 830.07
//
Query:       EGE27605.1  [L=473]
Description: F0F1 ATP synthase subunit beta [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-59  200.6   0.0    3.5e-59  200.0   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    1.1e-19   70.7   1.3    2.6e-19   69.5   1.3    1.7  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
  ------ inclusion threshold ------
      0.026   14.4   0.3       0.18   11.7   0.3    2.2  1  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
      0.056   13.8   0.0       0.11   12.9   0.0    1.4  1  RNA_helicase   RNA helicase
       0.12   11.7   0.1       0.22   10.8   0.1    1.4  1  ATPase         KaiC


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.0   0.0   9.7e-63   3.5e-59       1     213 []     127     353 ..     127     353 .. 0.93

  Alignments for each domain:
  == domain 1  score: 200.0 bits;  conditional E-value: 9.7e-63
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS.S.EEEEEEESEEHHHHHHHHHHCHH....SS...GGGGEEEEEEETTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxx....xx...xxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd.d.aiiyvgiGergnevaevleefpe....gt...imkrtvlvantsnepvaareas 89 
                  Gi+v+D+l+p+++G++++++g++gvGktv + +l+++   + + +++++g+Ger++e +++++e++e    +t     +++ +v+ ++nep+  r+++
   EGE27605.1 127 GIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELINNIALKhSgLSVFAGVGERTREGNDFYHEMQEagvvNTedfTQSKVAMVYGQMNEPPGNRLRV 224
                  99***************************999999888777447***********************7766225678889****************** PP

                  HHHHHHHHHHHHHT.......TSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHH CS
                  xxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  90 iytgitlAEyfrdq.......gknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvt 180
                  ++tg+t+AEyfrd+       g++vll++d++ r++ A  e+s++lg+mp++ gy+++l+ ++  l+ER++++  ++Gs+t+v+av+++++D++dp +
   EGE27605.1 225 ALTGLTMAEYFRDEkdeatgkGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGLLQERITST--QSGSITSVQAVYVPADDLTDPSP 320
                  ************963455555679*************************************************..88********************* PP

                  HHHHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 181 tatlgitdgfivLdkklaqrkhfPainvlvSvS 213
                   +t++++d+++vL++++a+++++Pa+++l S+S
   EGE27605.1 321 ATTFAHLDATVVLSRDIASQGIYPAVDPLDSTS 353
                  *******************************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   1.3   7.3e-23   2.6e-19       1      69 []       5      70 ..       5      70 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 7.3e-23
                   EEEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  1 ivqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   ivq+iG+v+dvef +g +p+i +al+v++    + +l+v+++lg+++Vr+i+mgst+Gl+rG +V + G
     EGE27605.1  5 IVQIIGAVIDVEFSRGDVPQIFDALHVDG---TETTLEVQQQLGDGVVRTIAMGSTEGLKRGLPVSNSG 70
                   89**************************4...569******************************8876 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   4.9e-05      0.18       3      28 ..     363     388 ..     361     423 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.9e-05
  T3SS_ATPase_C   3 pehlqaarklrellatyqenedLini 28 
                    +eh+  ar + e+l++y+e +d+i i
     EGE27605.1 363 EEHYSVARGVQEVLQRYKELKDIIAI 388
                    89**********************98 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     3e-05      0.11       3      63 ..     145     207 ..     143     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
  RNA_helicase   3 lyGpsgeGKStlakeLakall.kklklkkkdsvys.rnpeddfwdgYtgqevvvidDfgqvkd 63 
                   l+G +g+GK++ + eL+++++ k+++l     v       +df++  ++  vv  +Df q+k 
    EGE27605.1 145 LFGGAGVGKTVNMMELINNIAlKHSGLSVFAGVGErTREGNDFYHEMQEAGVVNTEDFTQSKV 207
                   79******************9667766666666665667789999999999999999999875 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.2e-05      0.22       2      84 ..     125     208 ..     124     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.2e-05
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa...edlrenakslGw.dlekleeegkla 84 
                 +tgI+ +D ++   + +g  v + G++G GKt+  ++ + + a k     vf  v e+    +d+++++++ G+ ++e++ ++ k+a
  EGE27605.1 125 ETGIKVIDLLC--PFAKGGKVGLFGGAGVGKTVNMMELINNIALKHSGLSVFAGVGERTregNDFYHEMQEAGVvNTEDFTQS-KVA 208
                 79******998..8*******************************999999****999999999******9996366666555.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3621.28
//
Query:       EGE27606.1  [L=139]
Description: F0F1 ATP synthase subunit epsilon [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-27   95.1   0.1    2.5e-27   94.6   0.1    1.2  1  ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwi
     0.0028   17.9  11.4     0.0047   17.1  11.4    1.4  1  ATP-synt_DE    ATP synthase, Delta/Epsilon chain, long alpha-


Domain annotation for each model (and alignments):
>> ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.1   2.8e-31   2.5e-27       1      80 []       4      84 ..       4      84 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 2.8e-31
                   EEEEEEESSSEEEEEEEEEEEEEESSSEEEE-TT--SEEEEEESEEEEEEEGG.GEEEEEEESSEEEEEETTEEEEEESSS CS
  ATP-synt_DE_N  1 lkleivtpervvfsgeveevvaptteGelgilpgHaplitaLkpgelrikted.geeesiavsgGflevqdnkvtiladta 80
                   +k+++v++ ++++ g++++++a++ +Ge+gil+gH+plit Lkpg++r+k++d ++ee+++vsgG+levq++ vt+lad+a
     EGE27606.1  4 FKCRVVSAREEIYVGDISMLIANGHSGEIGILAGHTPLITLLKPGPMRMKSADgSSEEVVYVSGGVLEVQPHVVTVLADSA 84
                   789************************************************994578999*******************98 PP

>> ATP-synt_DE  ATP synthase, Delta/Epsilon chain, long alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1  11.4   5.3e-07    0.0047       2      47 .]      89     133 ..      83     133 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.3e-07
                  C--HHHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHTT CS
  ATP-synt_DE   2 dIDverAeeAkerAeerLeeasddnidyarAqaaLrRAlaRlqvak 47 
                  d+D+++  eA++ Ae++L+++ ++nid   A  aL++ la+lq+++
   EGE27606.1  89 DLDEAKIAEARRNAEQALANQ-SANIDTTAALTALAESLAQLQTIQ 133
                  78999999*************.888******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1023.49
//
Query:       EGE27607.1  [L=237]
Description: two-component system response regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-25   87.9   0.3    6.7e-25   87.4   0.3    1.2  1  Response_reg  Response regulator receiver domain
    1.8e-23   82.4   0.4    3.7e-23   81.4   0.0    1.7  2  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.3   7.5e-29   6.7e-25       1     112 []      11     120 ..      11     120 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 7.5e-29
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +liv+Dd+ +++l++++l+++g+ +va  +dg+ a++ +  e++dl++lD+++pg dGl +++e+r++  + p+++lta++++ d v +l++gadd+
    EGE27607.1  11 ILIVEDDERLAMLTQDYLRKNGL-DVAIETDGARAIRRIIGEQPDLVVLDVMLPGSDGLAVCREVRAHY-QQPILMLTARTDDMDQVLGLEMGADDY 105
                   8**********************.*******************************************99.99************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   ++Kp++p+ Ll++++
    EGE27607.1 106 VAKPVQPRVLLARIR 120
                   **********99985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1         1   9.1e+03      48      59 ..     114     125 ..     113     130 .. 0.73
   2 !   81.4   0.0   4.1e-27   3.7e-23       3      77 .]     158     232 ..     155     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1
                  HHHHHHHHHHHT CS
  Trans_reg_C  48 vhisrLRkkLed 59 
                  v  +r+R  L+ 
   EGE27607.1 114 VLLARIRALLRR 125
                  677888988877 PP

  == domain 2  score: 81.4 bits;  conditional E-value: 4.1e-27
                  EEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   3 eveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                   v++t+ e++lL+lL++n+gr++sre+++e++ g ++d++dr++dv isr+R k++dd+++p++I+tvr++GY +
   EGE27607.1 158 LVDFTSAEYDLLWLLASNAGRILSREDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDSENPKRIKTVRSKGYLF 232
                  4899*********************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1892.95
//
Query:       EGE27608.1  [L=590]
Description: two-component system sensor histidine kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-18   65.6   0.0    9.7e-18   64.7   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    8.8e-12   44.9   0.8    2.4e-11   43.5   0.8    1.8  1  HisKA        His Kinase A (phospho-acceptor) domain
      6e-08   33.0   1.6      1e-07   32.2   0.2    2.2  2  HAMP         HAMP domain
    6.8e-05   22.7   0.0    0.00013   21.8   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   2.2e-21   9.7e-18       2     110 ..     452     560 ..     451     562 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 2.2e-21
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET. CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep. 98 
                 d + L+++++nlv+Na+++   +++i ++  + +++  isveD+G Gi++e+++k+f +f + dds++r +gg GlGlsiv +++  ++ +++v+++p 
  EGE27608.1 452 DRRYLHRVVQNLVGNALRY--AQSTIMLSAGVVKGEAFISVEDDGHGISEENREKVFIPFARlDDSRTRASGGYGLGLSIVSRIAFWFNAKLSVDESPt 548
                 7789**************9..45677666666668************************************************9999*******88887 PP

                 TTEEEEEEEEES CS
   HATPase_c  99 grGttftftlpl 110
                  +G +f+++ p 
  EGE27608.1 549 LHGARFIMKWPA 560
                 889999998876 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.8   5.4e-15   2.4e-11       1      67 []     342     407 ..     342     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 5.4e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHH.HHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelke.yletiesearrldhlvedlLdlsrieag 67 
                 s+++++  v+HELrtP++ i++++++L ++   +e+ ++ + + i + ++ l++l++++L+++++e+g
  EGE27608.1 342 SQRELTRAVSHELRTPVARIRFAVDMLADT--DDEDSRQlQRQFIDEDIESLNELIDEILTYAKLEEG 407
                 6899***********************995..445555548889999******************987 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.2   2.3e-11     1e-07       8      52 ..     293     337 ..     293     338 .. 0.96
   2 ?   -3.0   0.1       2.3     1e+04       6      24 ..     354     372 ..     349     377 .. 0.72

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.3e-11
                 HHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   8 rPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 r+L+ L   ++r+a+G+ldt + v g+D i++L  +fNaM ++++
  EGE27608.1 293 RRLQLLQLGVNRVAQGNLDTKVQVVGQDDIARLSMTFNAMTEHIK 337
                 79999************************************9986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.3
                 THHHHHHHHHHHHHHTTTB CS
        HAMP   6 ilrPLrrLaraarriaaGd 24 
                 +  P+ r++ a++ +a+ d
  EGE27608.1 354 LRTPVARIRFAVDMLADTD 372
                 6678889988999999764 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.8e-08   0.00013       4      78 ..     457     528 ..     454     573 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.8e-08
  HATPase_c_3   4 ekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslGkkGiGlk 78 
                  + ++  lv N+l     ++ +++   +  ++ i++eDdG+G+see+ ++++  +a+ + +     +  G +G+Gl 
   EGE27608.1 457 HRVVQNLVGNALRYAQSTIMLSAGVVK-GEAFISVEDDGHGISEENREKVFiPFARLDDS---RTRASGGYGLGLS 528
                  567889999999988888888888776.4789*****************55378998888...5788899999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4594.86
//
Query:       EGE27609.1  [L=476]
Description: two-component system sensor histidine kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.9e-16   58.4   0.0    1.7e-15   57.5   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.1e-07   31.7   0.0    2.5e-07   30.6   0.0    1.6  1  HisKA        His Kinase A (phospho-acceptor) domain
      3e-05   24.3   0.3    0.00018   21.8   0.1    2.4  2  HAMP         HAMP domain
  ------ inclusion threshold ------
      0.085   12.7   0.0       0.16   11.8   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   3.9e-19   1.7e-15       6     110 ..     341     456 ..     338     458 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 3.9e-19
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEE......EE......TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEE CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveika......se......ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGei 92 
                 ++++i nlv Na+++  +  ++  +i +      ++       +lv+ v+D G G+ +++l++++++f + ++++r+++g+GlGl+iv +++ l++G +
  EGE27609.1 341 IKRLIVNLVNNAIRYGEQPIHLIAKIIPpaqntqNDhifdhyPTLVLCVKDEGEGVAEDQLERIMQPFER-GESARTTQGSGLGLAIVSRIAHLHQGVV 438
                 6899**********9333334444444365554311455556799*************************.**************************** PP

                 EEEEETTTEEEEEEEEES CS
   HATPase_c  93 wvesepgrGttftftlpl 110
                 + ++ p++G ++ +++pl
  EGE27609.1 439 EAINHPNGGLQVCIKIPL 456
                 ************999997 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   5.6e-11   2.5e-07       3      31 ..     244     282 ..     242     317 .. 0.68

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 5.6e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC............ CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkre..........g 31 
                 + +lag++H+LrtPL+ ++++ae+L +e          +
  EGE27609.1 244 TIMLAGISHDLRTPLTRMRLTAEMLPDEffreglvydiE 282
                 568**********************88544444443332 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   3.9e-08   0.00018       1      53 []     185     238 ..     185     238 .. 0.90
   2 ?   -1.5   0.0      0.75   3.4e+03       7      20 ..     255     268 ..     250     275 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.9e-08
                 HHHHTTHHHHHHHHHHHHHHT.TTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarria.aGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 +l+r + rPL++L+raa++   +G+ +t ++ +g++Ei+    afN++ + L++
  EGE27609.1 185 VLVRGLNRPLKKLERAANNYIlHGHATTLPTQTGPNEIRKANTAFNRLFTTLNQ 238
                 5899***************9978887776666******************9986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHHH CS
        HAMP   7 lrPLrrLaraarri 20 
                   PL r++ +a+ +
  EGE27609.1 255 RTPLTRMRLTAEML 268
                 57999999999877 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.6e-05      0.16      32      71 ..     383     419 ..     340     436 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.6e-05
  HATPase_c_3  32 ktgeivieDdGkGmseeelknalrlatsskeakrkstslG 71 
                   t  ++++D+G+G+ e++l++ +++ +  ++a   +t+ G
   EGE27609.1 383 PTLVLCVKDEGEGVAEDQLERIMQPFERGESA---RTTQG 419
                  34789******************988877774...33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3548.86
//
Query:       EGE27610.1  [L=82]
Description: 30S ribosomal protein S16 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-23   82.1   0.1    2.6e-23   81.8   0.1    1.1  1  Ribosomal_S16  Ribosomal protein S16


Domain annotation for each model (and alignments):
>> Ribosomal_S16  Ribosomal protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.1   1.5e-27   2.6e-23       1      62 []       8      68 ..       8      68 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 1.5e-27
                   EESCTTCEEEEEEEEETTSSTTSSESEEEEEEETTTTSSTS.SEEE-HHHHHHHHHTTEEEE CS
  Ribosomal_S16  1 RfGrknrPfYrivvadsrkprdgrpiEklGtYdPlakkkekkevelneerikyWlgvGAqpt 62
                   R G+k+rPfY++vvad+r+ rdgr+iEk+G+++P+a+ +e  e +++ e  + W+++GAqpt
     EGE27610.1  8 RGGSKKRPFYQVVVADKRASRDGRFIEKIGFFNPMARGQEV-ETRIDLEAYNAWIAKGAQPT 68
                   89********************************9988876.5******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 664.35
//
Query:       EGE27611.1  [L=185]
Description: 16S rRNA processing protein RimM [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-19   70.0   0.0      2e-19   69.6   0.0    1.2  1  RimM      RimM N-terminal domain
    4.6e-10   39.4   0.0    6.9e-10   38.9   0.0    1.2  1  PRC       PRC-barrel domain


Domain annotation for each model (and alignments):
>> RimM  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   2.3e-23     2e-19       2      82 ..      21     100 ..      20     102 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 2.3e-23
                 EEEEEEEETTTTEEEEEE-SSSGGGGGGSSSEEEE.ETTEEEEE-EEEEEEETTEEEEEETT--SHHHHHTTTT-EEEEET CS
        RimM   2 vGkIvgahGlkGevkVkpftdfpealfkygrvlleakkgetreltvesvrvhkkgvivklegvddrdaAealkgaelfvpr 82 
                 ++++ +++G+kG++ V++ td+ +++f++++++++ +    ++ltv+ +r++++g+++ + +v dr+ Ae ++g+ ++v +
  EGE27611.1  21 IATLKKPYGIKGWLWVFSQTDERASIFQMQPWWMK-TATGFKPLTVKDWRIQGQGLVACFNEVPDRNVAETMNGTSIWVCK 100
                 78899******************************.7777899**********************************9966 PP

>> PRC  PRC-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   7.7e-14   6.9e-10       2      72 ..     109     179 ..     108     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 7.7e-14
                 EECCS---TT-EEEETTSSEEEEEEEEEEETTTTEEEEEEEEETTT.....-EEEEEGG.....CEECCCTEEEE CS
         PRC   2 defrasdliGkeVytedGeklGkVkDvvidekegrvralvvsvggflgigekevliPfd....lavkigkdriiv 72 
                 de++ sdliG++V++e+ e+lG++k++ ++++++++ +l+ +     +i+++  liP++    l v++ +++++v
  EGE27611.1 109 DEYYWSDLIGLTVMNEQAENLGVIKEM-FETGAHEIISLKPTAQ---SIDNEPRLIPWHsdvvLSVDLSAGTMLV 179
                 89************************9.**************99...889*********8877777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1351.87
//
Query:       EGE27612.1  [L=250]
Description: tRNA (guanine-N(1)-)-methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-52  177.8   0.0    2.5e-52  177.4   0.0    1.1  1  tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase


Domain annotation for each model (and alignments):
>> tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   0.0   1.4e-56   2.5e-52       2     195 .]      23     229 ..      22     229 .. 0.97

  Alignments for each domain:
  == domain 1  score: 177.4 bits;  conditional E-value: 1.4e-56
                  GGSHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEETSSHHHHHHHHHHHCCGH...........HCGG-TTEEEESSCGGHHHHCCCHHHCGGGEEEEE CS
  tRNA_m1G_MT   2 kkasekelvslevqllrdytanrrntvddelygggagmvlkaepelealesv...........ntekwkvilltptGkkftqelaeeLsekeklvylc 88 
                  ++a ++++v+++v+++r++t++ +++ d +++ggg+gmv++aep  +a+ ++           + +   v++l+p+Gk +++ l+  + + + +++lc
   EGE27612.1  23 GRAVKNGQVNIQVINPRNFTTDNYKRIDERPFGGGPGMVMMAEPLEKAILYAkklagragcdiQNGRCPVVYLSPQGKTLSEPLVATMPNLDGMILLC 120
                  6899*******************************************9988778899999866458899***************************** PP

                  TTTSSBECCGGTTSSE.EEEEESSSSTTCSTTHHHHHHHHHHHHTTTC..EEB-S-CCC...CHCTS..CTTSEHHTEHHHHHHHHHCCCTTTHHHHH CS
  tRNA_m1G_MT  89 gdyegvdervdddkvd.eysIGdfVlkggekgalvlidavkrllaGvl.ntaslpedsfsnrllekpnytrpltlrglkVpeiLlsgnhakienWrlk 184
                  g+yeg+der++  +vd e+sIGd+Vl+gge++a+vl+d+v r+l+ ++ ++ s ++dsf ++ll++p+yt+pl++ g  Vp +Llsg+ha+i++Wr  
   EGE27612.1 121 GRYEGIDERLITCYVDqEISIGDYVLTGGELPAMVLMDSVIRRLPQIMgDDLSAEQDSFVDGLLDYPHYTKPLDFHGQTVPSVLLSGHHANINKWRFL 218
                  ***************9********************************************************************************** PP

                  HHHHHHSCSXS CS
  tRNA_m1G_MT 185 ealertvprRk 195
                  e+++rt++rR+
   EGE27612.1 219 EQVKRTKARRP 229
                  **********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1997.08
//
Query:       EGE27613.1  [L=123]
Description: 50S ribosomal protein L19 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-48  162.7   1.7    2.6e-48  162.5   1.7    1.0  1  Ribosomal_L19  Ribosomal protein L19


Domain annotation for each model (and alignments):
>> Ribosomal_L19  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   1.7   1.5e-52   2.6e-48       2     111 .]       7     115 ..       6     115 .. 0.97

  Alignments for each domain:
  == domain 1  score: 162.5 bits;  conditional E-value: 1.5e-52
  Ribosomal_L19   2 likeiekeqlkkdlpefkvGdtvkVkvkikegkkeRiqafeGvviarkgkgisetftvRkisegvgvervfplhspkiekievvrrgkvrrakLyY 97 
                    l++ +e++ql kd p+f++Gdtv V+vk++eg++eR qafeGvvia++++g+++ ftvRkis+gvgver f+lhsp i++iev rrg+vrrakLyY
     EGE27613.1   7 LVQVVENAQL-KDHPSFAPGDTVVVQVKVREGDRERQQAFEGVVIAKRNRGLNSAFTVRKISSGVGVERAFQLHSPLIASIEVKRRGDVRRAKLYY 101
                    5788999996.689********************************************************************************** PP

  Ribosomal_L19  98 Lrelkgkaarikek 111
                    Lre++gk+arikek
     EGE27613.1 102 LRERSGKSARIKEK 115
                    ************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1039.17
//
Query:       EGE27614.1  [L=150]
Description: type IV pilin PilA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-19   68.7   6.2    9.1e-19   68.4   6.2    1.1  1  Pilin         Pilin (bacterial filament)
    2.6e-09   36.2   4.9    3.9e-09   35.7   4.9    1.3  1  N_methyl      Prokaryotic N-terminal methylation motif
      0.004   17.1   1.1      0.009   16.0   1.1    1.6  1  Big_1         Bacterial Ig-like domain (group 1)
  ------ inclusion threshold ------
      0.053   14.4   0.5       0.11   13.4   0.2    1.6  2  DUF2547       Protein of unknown function (DUF2547)
       0.13   12.5   0.3       0.17   12.1   0.3    1.2  1  Babuvirus_MP  Movement and RNA silencing protein
       0.16   11.7   2.1       0.18   11.5   1.2    1.5  2  TadF          Putative tight adherence pilin protein F


Domain annotation for each model (and alignments):
>> Pilin  Pilin (bacterial filament)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   6.2     3e-22   9.1e-19       3     109 .]      37     136 ..      35     136 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 3e-22
                 HHHHHHHHHHHHHHHHHHHHHCCCSSSCTCCCCCTTBSTCSCCTCEEEEECCCEECCEEEEEECCCSSTCCTTEEEEEEEECTTSCEEEEEEES-SS-G CS
       Pilin   3 aqvsealalasglKtavaeaalnegktpttaaadiGlasstaicgvisvtveaatggtitatfggnaaakikgktltltrtadsgsgkWtCgtattvde 101
                 aqv ++++++s+l+tav e++l +g t +t+ + + ++s+  +++ i ++ +a+ ++ti+atf  +aa++++++ +t+t ta+   g+W C+t  tvd+
  EGE27614.1  37 AQVNRVMMETSQLRTAV-EMCLLQGITDSTKCD-AVISSDLVKNTDIGLAQQANGTNTIKATFSDTAANALHNQSITWTHTAA---GGWRCTT--TVDK 128
                 9****************.999999988887776.5666655555589999999999***************************...*******..**** PP

                 GGSSGGCE CS
       Pilin 102 kflPagCr 109
                 +++P+gC+
  EGE27614.1 129 DLAPKGCT 136
                 *******6 PP

>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   4.9   1.3e-12   3.9e-09       1      26 [.       1      26 [.       1      27 [. 0.95

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.3e-12
    N_methyl  1 mrkqrGFTLiElLvalaIlaillaaa 26
                m+ q+GFTLiEl+++++I+++l++ a
  EGE27614.1  1 MKAQQGFTLIELMIVILIIGVLAMFA 26
                899********************987 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.1     3e-06     0.009       6      33 ..      90     118 ..      87     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3e-06
       Big_1   6 tntltatvkDangnpvagatVtfsvsg.g 33 
                 tnt++at  D   n++ ++++t++ ++ g
  EGE27614.1  90 TNTIKATFSDTAANALHNQSITWTHTAaG 118
                 799*********************99855 PP

>> DUF2547  Protein of unknown function (DUF2547)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   3.8e-05      0.11       8      33 ..      17      42 ..      13      79 .. 0.69
   2 ?   -2.1   0.0       2.6   7.8e+03      38      50 ..      92     104 ..      72     116 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.8e-05
     DUF2547  8 LllgivAifaLPeaqelaneeaveny 33
                L++g++A+fa+P+ q+   + +v+  
  EGE27614.1 17 LIIGVLAMFAIPQYQKRVVTAQVNRV 42
                899************98766655332 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
     DUF2547  38 svqqqvletaall 50 
                 +++  ++ taa++
  EGE27614.1  92 TIKATFSDTAANA 104
                 3334444444433 PP

>> Babuvirus_MP  Movement and RNA silencing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   5.6e-05      0.17      18      69 ..       7      53 ..       4      79 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.6e-05
  Babuvirus_MP 18 fgaifiaitilyillvllfevpryikelvrclveyltrrrvwmqrtqlteat 69
                  f  i + i il i ++ +f +p+y k +v + v+     rv m+ +ql  a 
    EGE27614.1  7 FTLIELMIVILIIGVLAMFAIPQYQKRVVTAQVN-----RVMMETSQLRTAV 53
                  55677889999999999***********999885.....7778877776664 PP

>> TadF  Putative tight adherence pilin protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   6.1e-05      0.18       4      43 ..       2      41 ..       1      45 [. 0.90
   2 ?   -1.0   0.0      0.44   1.3e+03      73     101 ..      49      77 ..      29     117 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.1e-05
        TadF  4 kkqrGsvtielalvllflsllliflvdvaillstkgkLdr 43
                k q+G   iel++v+l++ +l +f +   +++ ++++ +r
  EGE27614.1  2 KAQQGFTLIELMIVILIIGVLAMFAIPQYQKRVVTAQVNR 41
                78***********************999999988888877 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.44
        TadF  73 leklAkrllrggesddkkigvvleelkfe 101
                 l +  +  l +g +d  k+++v+ +   +
  EGE27614.1  49 LRTAVEMCLLQGITDSTKCDAVISSDLVK 77 
                 44444444445555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1051  (0.0586201); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1054.06
//
Query:       EGE27615.1  [L=873]
Description: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-93  311.1   0.0    5.2e-93  310.3   0.0    1.4  1  Aconitase_2_N    Aconitate hydratase 2 N-terminus
    3.6e-64  215.5   0.2    6.8e-64  214.6   0.2    1.5  1  Aconitase_B_N    Aconitate B N-terminal domain
    8.4e-40  137.1   0.0    7.3e-38  130.7   0.0    2.5  1  Aconitase        Aconitase family (aconitate hydratase)
  ------ inclusion threshold ------
      0.093   12.7   0.0       0.22   11.6   0.0    1.6  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
       0.15   11.2   0.0       0.37   10.0   0.0    1.5  2  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly


Domain annotation for each model (and alignments):
>> Aconitase_2_N  Aconitate hydratase 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.3   0.0   1.5e-96   5.2e-93       1     204 []     167     383 ..     167     383 .. 0.97

  Alignments for each domain:
  == domain 1  score: 310.3 bits;  conditional E-value: 1.5e-96
                    EEEEEEEEEEEHHHHS-GGGGGGTTSHHHHHCCTT-S-BTT..........SHHHHHHHHTTSS-EEEEEEEEEES---THHHHHHHHHHSEEETT CS
  Aconitase_2_N   1 vtvfkveGetntDdlsPasdAwsRsDiplHakamlkkkaee..........elkaieelkkkgvplayvgdvvGtGssRksavnsvlWtigedipy 86 
                    +tvfkv+GetntDdlsPa+dAwsR+DiplHa+amlk+++e+          +l++i+el ++g+p+ayvgdvvGtGssRksa+nsvlW++ge+ip+
     EGE27615.1 167 ITVFKVTGETNTDDLSPAQDAWSRPDIPLHANAMLKNEREGihpekngevgPLTQIQELLDRGHPVAYVGDVVGTGSSRKSATNSVLWFFGEEIPH 262
                    58********************************************************************************************** PP

                    EEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE---TT--TT-EEE..EETTTTEEEE.TT--EEEE---S-TCHHHHHHHTSHHHHHHHHHHHHHH CS
  Aconitase_2_N  87 vPnkraggvvlGgkiaPiFfntvedsGalpieadvskletGdvie..ikpkegkikk.eegevvsefklkpetlldevraggripliigrglteka 179
                    +Pnk+ ggv+lGgkiaPiFfnt+ed+Galp+e+dv+++++Gd i+  i++++ ++   ++g+ ++++klk+ +lldevraggri+liigr+lt+ka
     EGE27615.1 263 IPNKKDGGVCLGGKIAPIFFNTMEDAGALPVEIDVTEMNMGDEITlkIDHANATVAAfKDGTQIAKSKLKTPVLLDEVRAGGRINLIIGRNLTSKA 358
                    ******************************************875226788888988899************************************ PP

                    HHHTT-----SS----------S-- CS
  Aconitase_2_N 180 realgleasdvFakpkepaeegkgy 204
                    re+lgle+s++F++p++pa++gkg+
     EGE27615.1 359 RESLGLEPSTLFRTPEQPADTGKGF 383
                    ************************8 PP

>> Aconitase_B_N  Aconitate B N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.6   0.2   1.9e-67   6.8e-64       1     154 []       4     155 ..       4     155 .. 0.99

  Alignments for each domain:
  == domain 1  score: 214.6 bits;  conditional E-value: 1.9e-67
  Aconitase_B_N   1 eyrkhveeraalgipplPLdaeqtaelvellknpkageeellleLltnrvppGvdeaayvKAefLaaiakgeaesplispeeAvelLgtMlGGynv 96 
                    eyr+hv+er+alg+pp+PL+  qta+l+ellknp++geee+l++Ll+nrvp+Gvd+aayvKA+fL+ai+kge++spli++e+Av lLgtMlGGynv
     EGE27615.1   4 EYRAHVAEREALGVPPQPLTDVQTADLIELLKNPPQGEEEYLIDLLENRVPAGVDQAAYVKAAFLNAIVKGETSSPLINKERAVYLLGTMLGGYNV 99 
                    6*********************************************************************************************** PP

  Aconitase_B_N  97 ksLidllkekdeelaeeaaeaLkktllvydafedveelake.naaakevleswaeaewF 154
                    ++L++ll+   +el e aa+aLkktllv+daf+d+ee+ak+ na+ak+vleswae+ewF
     EGE27615.1 100 APLVELLD---DELGEMAAKALKKTLLVFDAFHDIEEKAKAgNANAKAVLESWAEGEWF 155
                    *******9...99*********************************************9 PP

>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.0     2e-41   7.3e-38     102     461 .]     476     826 ..     467     826 .. 0.83

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 2e-41
   Aconitase 102 vppgqGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlav......igklrk 194
                   pg G++H   l+  ++lp+++  g+DSHT+   g   + ++ G+  ++ + ++  + l +p++v vk++Gk+++g+t +Dlv+a+      +g l++
  EGE27615.1 476 LRPGDGVIHSW-LNR-MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVKFKGKMQPGITLRDLVHAIpyyaiqAGDLTV 569
                 5799******9.666.7***************9999...89*******************************************998444433333443 PP

   Aconitase 195 kgvv.........gkvvEffG.egvesLsledraTiaNMaaEvGAt.tglfpvdektleYLkatgr..........eeaavlveaydkaqalf.e...l 268
                              g+++E    e  ++L++e+ + +++ +aE  A  +++   +ek+ eYL+ +             +a++l ++++++q+++ +   l
  EGE27615.1 570 ---EkkgkknifsGRILEIDLtEMENDLTVEQAFELSDASAERSAAgCAITVSEEKVAEYLRSNIVmlkwmiaegyGDARTLARRAENMQKWLdNpslL 665
                 ...033124555688888754255568***************9877255555567999****5444777777776544443455556666644425679 PP

   Aconitase 269 aadedaeydkvleldlstl.epsvagpkrPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaagllakav 366
                 +ad+daey+kv+e+dl+++ ep +  p+ P+da  lse +                              k+d ++igSC+ +++ ++raa +ll+ +v
  EGE27615.1 666 KADADAEYAKVYEIDLADIkEPILCCPNDPDDAKLLSEVA----------------------------GDKIDEVFIGSCM-TNIGHFRAAGKLLQ-EV 734
                 9******************56999********99994443............................22599*******8.6789*********9.88 PP

   Aconitase 367 ekglkvkpgvktsvaPGSevvkayleaeGlleiLekaGfevvgagCstCignsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                  +g  +    ++++aP ++  +++l  eG+ ++  +aG+ +  +gCs C+gn+ r++++ ++vs+s+RNF +R g++++ yLaS el+ +a++ G
  EGE27615.1 735 PAGSLTT---RLWIAPPTKMDERQLMDEGYYNTYAQAGARTEMPGCSLCMGNQARIAPNCTAVSTSTRNFPNRLGQGANVYLASAELASVASVLG 826
                 8884333...69****************************************************************************9998876 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.1e-05      0.22      57      93 ..     693     727 ..     691     736 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.1e-05
                      HHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGG CS
  Ketoacyl-synt_C  57 gDpiElealkkvfgekarkqplavgSvKsniGHleaA 93 
                      +Dp  +++l++v g+k   +++++gS+ +niGH  aA
       EGE27615.1 693 NDPDDAKLLSEVAGDKI--DEVFIGSCMTNIGHFRAA 727
                      79999**********99..56************9998 PP

>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0001      0.37     102     140 ..     630     668 ..     618     705 .. 0.80
   2 ?   -3.6   0.0       1.4   5.1e+03     175     206 ..     811     842 ..     802     855 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0001
                      HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSBT CS
  Bac_rhamnosid6H 102 aivivpwelyetygDkeilkkqYesmkryldylkqrsdd 140
                       iv++ w++ e ygD ++l+++ e+m+++ld  +  + d
       EGE27615.1 630 NIVMLKWMIAEGYGDARTLARRAENMQKWLDNPSLLKAD 668
                      689***************************986555544 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.4
                      HHHHHHHHHHHHHHTTS..--HHHHHHHHHHH CS
  Bac_rhamnosid6H 175 lvrslklvakiaellgkeedakkyaalaeelk 206
                      ++ +  ++a +a++lg+  ++++y   a +l+
       EGE27615.1 811 VYLASAELASVASVLGRLPTVEEYMGYAGKLE 842
                      55666778888999999888888877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5997.29
//
Query:       EGE27616.1  [L=571]
Description: urocanate hydratase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-91  305.3   0.2    2.1e-91  304.7   0.2    1.3  1  Urocanase_C  Urocanase C-terminal domain
    5.6e-77  258.1   0.1    7.9e-77  257.6   0.1    1.2  1  Urocanase    Urocanase Rossmann-like domain
    3.2e-60  201.4   0.0    6.1e-60  200.5   0.0    1.5  1  Urocanase_N  Urocanase N-terminal domain


Domain annotation for each model (and alignments):
>> Urocanase_C  Urocanase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.7   0.2   3.5e-95   2.1e-91       1     195 [.     367     561 ..     367     562 .. 0.99

  Alignments for each domain:
  == domain 1  score: 304.7 bits;  conditional E-value: 3.5e-95
                  HHHTTT---EEEEETT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----SS-EEE----TTHHHHHHHHHHHHHHHSSSSS-EEEEE-S-STTS CS
  Urocanase_C   1 plFsegkGPFRwvalsgdpeDlaktdeavlellkekedlirWikeAeekvkvqGlpaRilyldaeeRekialafnelvregeikapvvlgRDhlDvgs 98 
                  plF++gkGPFRwvalsgdpeD++ktd+ ++el++e++++++W+++A++++++qGlpaRi++l+ +eR+k++lafne+v++ge+k+p+v+gRDhlD+gs
   EGE27616.1 367 PLFCQGKGPFRWVALSGDPEDIYKTDQKIKELFPENTHVHNWLDMAKDRIHFQGLPARICWLGLGERDKAGLAFNEMVKNGELKGPIVIGRDHLDTGS 464
                  79************************************************************************************************ PP

                  EE-TTTTTTT-TTS-TTB-HHHHHHHHHHHHHT-SEEEEEESTTT-TTS-EEEEEEEEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHH CS
  Urocanase_C  99 vasPfretenikDGsdaiaDwavlnallnaargatwvslhnGGgvgiGesinagfvvvldGteeaeerlervltaDvalGvvRradagyeealevak 195
                  vasP+re+e++kDG+da++Dwa+ln +ln+a gatwvslh+GGgvg+G+s+++g+v+v+dGte+a++rl++vl +D ++Gv+R+adagye a+e+ak
   EGE27616.1 465 VASPNRESESMKDGTDAVSDWALLNGMLNVAGGATWVSLHHGGGVGMGYSQHSGMVIVADGTEAAAKRLANVLVNDCGSGVMRHADAGYELAIETAK 561
                  *********************************************************************************************9987 PP

>> Urocanase  Urocanase Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.6   0.1   1.3e-80   7.9e-77       1     210 []     142     364 ..     142     364 .. 0.95

  Alignments for each domain:
  == domain 1  score: 257.6 bits;  conditional E-value: 1.3e-80
                 TTHHHHHHHHHHHHHHHHHHS.......T.T--TT-EEEEE--STTGGGHHHHHHHTT-EEEEEES-HHHHHHHHHTTS-SEEES-HHHHHHHHHHHHH CS
   Urocanase   1 GpQGivqGTyetllnaarkkl.......gkgdlkgklvvtaGlGgMsgaQplAatiagavalvvevdesriekrleqgyvdevaddldealalikeakk 92 
                 G+QGivqGTyet+++a+r+++       ++++ kg++++taGlGgM+gaQplAat+aga++l +e+++s+i+ rl++gyvd++a+dld+a +like+++
  EGE27616.1 142 GTQGIVQGTYETFAEAGRQHFgtkkgdkSTDNWKGRWILTAGLGGMGGAQPLAATFAGATSLNIECQQSSIDFRLRTGYVDKQANDLDHAYELIKEHTS 240
                 9********************8877665568899***************************************************************** PP

                 CT--EEEEEES-HHHHHHHHHCT....T---SEE---S-TT-TTTS---TT--HHHHHHHHH..H-HHHHHHHHHHHHHHHHHHHHHHHHTT-EE-B-S CS
   Urocanase  93 ekealsigllgnvvdvleelvee....gvlvdlvsdqtsahdplnGYlPegltleeakelrk..edpekfkeevkeslarhveailklqekGavvfdYG 185
                 ++ea+si+llgn++++l+++v++     +++d+v+dqtsahd ++GYlP g+t+++++++++  ++++k+++e+ +s+a hv+a+l+lq+ G+ + dYG
  EGE27616.1 241 KGEAVSIALLGNAAQILPQIVQRakngDIKPDFVTDQTSAHDLIHGYLPIGWTVDDWRAAQQdpSQHAKLTQEAAKSCAIHVQAMLDLQKMGVPATDYG 339
                 **********************9998659****************************9777622355678999************************** PP

                 S-HHHHHHHTT-TTGGGS-BHHHHT CS
   Urocanase 186 nnlrkeakeagvkeafkypsyvedi 210
                 nn+r+ a++agvk+af++p++v+++
  EGE27616.1 340 NNIRQVAFDAGVKNAFDFPGFVPAY 364
                 ***********************98 PP

>> Urocanase_N  Urocanase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.5   0.0     1e-63   6.1e-60       1     127 []      13     139 ..      13     139 .. 0.99

  Alignments for each domain:
  == domain 1  score: 200.5 bits;  conditional E-value: 1e-63
                  -----SS--SSSSHHHHHHHHHHHHCT-TTT-SBGGGTEEETTTEESSSSHHHHHHHHHHHHH--TTEEEEEETTEEEEEEE--TTS-SEEEEES-B- CS
  Urocanase_N   1 ikakrgeelkaksweaeailrmleNnLdpevaekpeeLvvYggtgkaarnweqfelivktLkeleedetLlvqsGkpvglfksheeaPrvliansnlv 98 
                  ika++g++l++ksw +ea +rm++NnL+p+vae+p+ LvvYgg+g+aarnwe++++i+++Lk+le+d+tLl+qsGkpvg+f++he+aPrvliansnlv
   EGE27616.1  13 IKAPTGTALTCKSWLSEAPYRMIQNNLHPDVAENPQSLVVYGGIGRAARNWECYDQILASLKQLEDDQTLLIQSGKPVGVFNTHENAPRVLIANSNLV 110
                  79************************************************************************************************ PP

                  GGG-SHHHHHHHHHTT---B-TTTTTTT- CS
  Urocanase_N  99 pkyateeefeeleakgltmyGqmtAgswi 127
                  p++at+e+f+el++k+l myGqmtAgswi
   EGE27616.1 111 PRWATWEHFNELDRKDLFMYGQMTAGSWI 139
                  ****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4362.58
//
Query:       EGE27617.1  [L=517]
Description: histidine ammonia-lyase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.1e-183  609.7   7.7   3.5e-183  609.5   7.7    1.0  1  Lyase_aromatic  Aromatic amino acid lyase


Domain annotation for each model (and alignments):
>> Lyase_aromatic  Aromatic amino acid lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  609.5   7.7    2e-187  3.5e-183       1     464 []      11     475 ..      11     475 .. 0.98

  Alignments for each domain:
  == domain 1  score: 609.5 bits;  conditional E-value: 2e-187
                     --HHHHHHHHTCCCEEEE-HHHHHHHHHHHHHHHHHHHCTB--TTTSB-SGGGGGBB--HHHHHHHHHHHHHHC---EEEE--HHHHHHHHHHHH CS
  Lyase_aromatic   1 LtledvvavargkakvelspearerveasravleeilaegepvYGvntGfGaladvripkedleelqrnllrshaaGvgeplpeevvRaamllrl 95 
                     Lt++++ +v +g +k++l+p a e+++asr+++++i+a+++p YG+ntGfG la++ri++++le lqrnl+ sh++G+g+ lp+evvR++m++++
      EGE27617.1  11 LTFAQLRQVYDGPVKISLDPTAYEAIDASRQAVQAIIAKDKPAYGINTGFGLLAKKRISDNELELLQRNLILSHSVGTGDRLPDEVVRLIMVMKV 105
                     899******************************************************************************************** PP

                     HHHTTS-S---HHHHHHHHHHHHCTEEE--EEES-------HHHHHHHHHHHTTSSTCCETTEEEEHHHHHHHTT------TTTHHHHCCSTTHH CS
  Lyase_aromatic  96 nslakGysGvrpevverllellnagitPvvperGSvGaSGDLaplahlalvliGegevyykgerlpaaealaeaglepleleakEgLAlinGtal 190
                     +sla+G sGvr evv++ll l+n++i+P +p +GSvGaSGDLapl+h++l+++G g+v ++ge ++a++al+ agl+p+ l+akEgLAlinGt+ 
      EGE27617.1 106 SSLAQGVSGVRREVVDSLLGLINHNIIPHIPAKGSVGASGDLAPLSHMTLAMLGFGDVSVNGENMSAKKALDDAGLTPIVLAAKEGLALINGTQT 200
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-BCGGG-HHHHCCS--HHHHHHHHHHHHHTTT-SSS...-SB-SS-SS--HHHHTHHHHHHHHH CS
  Lyase_aromatic 191 mtalaalaledaerllrladvaaAlslealrGsteafdprihalrphpgqievAarlrallegSelv.shekdeerlvQDayslRcaPqvhGavl 284
                     +tala+  ++ a+ ll++a+v++++s++a +Gs+++fd+rih++r h gq ++A++ r+l+++S++  sh++d+er vQD+y+lRc Pqv+Ga+l
      EGE27617.1 201 STALALRGYFMAQDLLAAATVVGSMSIDAAKGSDAPFDARIHDARGHHGQTQIASAHRQLIADSQIRaSHKEDDER-VQDPYCLRCQPQVMGACL 294
                     *******************************************************************999666666.****************** PP

                     HHHHHHHHHHHHHHTS--SSSEE..EGCCTCCE---TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTTTTT--GGG-SSTCTTB-TTHHH CS
  Lyase_aromatic 285 dalaaarevleiElnsatDNPlvd.deeegavlsgGnFhgepvalalDklaialaelaniserrierLvnpalsegLpafLaaeepglnsgfmia 378
                     d +++a ++l iE+n++tDNPl+  d+++  ++sgGnFh+epva+a+D+la+a++e++++serri+ L++ +ls gLpafL+ ++pg+nsgfmia
      EGE27617.1 295 DVINQAGKTLLIEANAVTDNPLIFnDNDGPVAISGGNFHAEPVAFAADMLALAISEIGSMSERRIALLIDATLS-GLPAFLV-KNPGVNSGFMIA 387
                     ***********************746667788******************************************.*******.************ PP

                     HHHHHHHHHHHHCHCS-SGGG--TCTTTTCSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..TCC-HHHHHHHHHHHC CS
  Lyase_aromatic 379 qytaaalvsenktlahPasvdsiptsanqeDhvSmgliaarkllevvenlekvlAiellaaaqaldlrrk..lksspateavyeavre 464
                     ++taaal+senk+ ahPasvdsiptsanqeDhvSm+++a r+l +++ n++++++iellaaaq++d++ +  l++sp+++ v++++r+
      EGE27617.1 388 HVTAAALASENKSHAHPASVDSIPTSANQEDHVSMATYAGRRLYDMACNTATIVGIELLAAAQGVDFHLEegLHTSPKLASVHQTLRQ 475
                     *******************************************************************87666666********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3693.94
//
Query:       EGE27618.1  [L=354]
Description: formimidoylglutamase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-54  184.2   0.2    4.3e-54  183.9   0.2    1.0  1  Arginase       Arginase family
  ------ inclusion threshold ------
       0.18   12.2   0.1       0.35   11.3   0.1    1.4  1  baeRF_family6  Bacterial archaeo-eukaryotic release factor fa


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   0.2   4.8e-58   4.3e-54       2     275 ..      53     338 ..      52     343 .. 0.88

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 4.8e-58
                 EEEEEEEE--T...TTSSSGGGGGHHHHHHHHHHTSBTHCHEETTTTE.SCCSEEEEEEEEE--......SSCHHH.HHHHHHHHHHHHHHTTCEEEEE CS
    Arginase   2 dvallGvPfda...agsgrpGarfGPraireasarleealeynlelgv.leelkivdlgdvavt......pvdnee.vleqieeavaeilkagklpivl 89 
                 ++al+G+++d    +++gr Ga+++P+ai +  a+l    +y++++ + +    ++d+g+v ++      p +  e + +  +++++++l+a++lpi l
  EGE27618.1  53 KIALIGFACDQgvnRNQGRIGAKHAPDAIKSSFAKLPI--SYQTQQAFqSMAGIVTDAGNVVCDdddticP-NLLEiAQQDYADKISTVLNANALPIGL 148
                 69*********99899******************9994..3555444433444578999999996666543.3344349999999999*********** PP

                 ESSGGGHHHHHHHHHHHH......STTEEEEEESSS----SSCTTTBSSSTTSHHHHHHHHTSECG..CEEEEEEE-STCSH..HHHHHHHTTSEEEEH CS
    Arginase  90 GGDHsialgilralaeky......gkplgvihfDAHaDlrtpetegsgnshGtpfrraaeegllkp..kklvqiGirsvdne..eyelakelgirvitm 178
                 GG+H+ia+g++ +l +++       +++g+i++DAH+Dlr+++      ++Gtpfr++ae+  +k+  +++++iGi +++n+   ye a +lg+ vi +
  EGE27618.1 149 GGGHEIAWGSFLGLWQHMavaptpLANIGIINLDAHFDLRQDQ----YATSGTPFRQIAEHLDIKEqpFHYLCIGISQFSNTasLYEQAFDLGVSVIGD 243
                 **********************99557*************987....589*********884444446**************998999988******** PP

                 HHHHHHHHHHHHHHHHHHHTCTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSSTTTHHHHHHHHHHH CS
    Arginase 179 reidelglkavveeilervgaeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldteaeqtarlaarlvr 275
                 +++++l+ +a+ ++il++++   d +yl++D+D+l  +v+P++++ ++ Gl+l+ +++++  + +++++  +D++Ev+P++d+++ +  ++a rl++
  EGE27618.1 244 DDCHRLDWQAIEQKILAFIA-PLDVIYLTIDMDCLAGSVMPAVSAVAAKGLSLDFVERCVLLIINTGKVKVIDMAEVSPKYDIDG-RGLKVAGRLLA 338
                 *******************6.669**************************************9999*****************76.88888888776 PP

>> baeRF_family6  Bacterial archaeo-eukaryotic release factor family 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.9e-05      0.35      63     116 ..      15      70 ..       7     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.9e-05
  baeRF_family6  63 ayhGhnekdeekkid.lenYyqavdkaLkeeleneka.plvLaaleelqplfrkvn 116
                    ay G  e+ e++k   + +Y qa d+aL+++ +++++ ++ L++    q + r+  
     EGE27618.1  15 AYTGRAEPFENDKACyWYQYIQAFDDALNRKNNQKNQpKIALIGFACDQGVNRNQG 70 
                    7899999988888877***************9999998999999877776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2847.94
//
Query:       EGE27619.1  [L=423]
Description: imidazolonepropionase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-23   82.6   0.0      1e-22   80.9   0.0    1.7  1  Amidohydro_1  Amidohydrolase family
    7.7e-22   78.4   0.1    1.9e-15   57.3   0.0    2.4  2  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
       0.04   13.3   0.0       0.06   12.7   0.0    1.2  1  A_deaminase   Adenosine/AMP deaminase
       0.11   13.0   0.0        0.3   11.6   0.0    1.7  1  ILEI          Interleukin-like EMT inducer
       0.11   12.0   0.0        3.5    7.2   0.0    2.2  2  SapC          SapC


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   2.9e-26     1e-22       2     320 ..      84     406 ..      83     423 .] 0.81

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 2.9e-26
                   EEE-EEEEEEECETTECSSSGHHHHH........................STTHHHHHHHHHHHHHHHHTTEEEEE.EEEHSSTH..HHHHHHHHHH CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrgatledwl........................vppetaaealesgiktalksGtttva.dmgattst..giealleaae 71 
                   ++P+lID H+Hl    +r++ +e  l                        ++ +++++ +e+ +k++l  G+ t   ++g+   +  + + +l+ a+
    EGE27619.1  84 LTPALIDCHTHLVYAGNRSDEFEARLtgvsyeqiakngggiistvnatrqASFDELYAQSEKRLKALLAEGVATLEiKSGY-GLDlqNERKMLQVAR 179
                   89**********98888887444444566677777***************9999******************887514444.4445799******** PP

                   TSSSEEEEEEESSEGGS......GCCCSHHHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE..TSSCHHH CS
  Amidohydro_1  72 elplglrilggkvsldr......gsaetskasreklkagaaetikgkadgvvk.valapheapafsdeelkealkeakkrdlpvaiHa..letkgev 159
                   +l ++++i ++ + l+       ++++   a+  + ++ + e++ + + +++  +  a  e  af + ++k+++++a   +lpv  Ha  l++    
    EGE27619.1 180 KLGQDYGITVKTTYLAAhatppeYKDDDGNAQNDAYIDKVCEWLPILHQEGLVdAVDAFCENIAFNKQQVKKVFEVAQSLGLPVKLHAeqLSDMSGG 276
                   *988*******999999******7777777777777777789999988888887999999****************************875555555 PP

                   HHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEE..HHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCC CS
  Amidohydro_1 160 edaeaafgetiehgthlevaeslglldeiklilahgvhlt..pteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgns 254
                    + +a f+    ++ h e++ +    d+i+ +++ g+     pt + +l                   +++++++ k+ ++Gv ++++tD ++ g s
    EGE27619.1 277 -ALVASFD--GLSADHIEYLSD----DSIQRMAQSGTVGVllPTAFYVL------------------KETQLPPIDKMRQQGVSMAISTD-CNPGTS 347
                   .5555555..355556777666....88888888888777777744443..................56699999999999*********.988888 PP

                   G..GHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC.C CS
  Amidohydro_1 255 l..nlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl.d 320
                   +  ++l  + +a+             +l+++eal+ +T+n+Akalgl d +G+i+ G+dAD++++d   
    EGE27619.1 348 PstSILLAMNMAC----------TLFKLTPEEALAGTTLNAAKALGLQDSKGKIAIGYDADIALWDIeR 406
                   8667777777777..........3467**************************************8742 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.7e-07   0.00097       2      25 ..      76      99 ..      75     113 .. 0.86
   2 !   57.3   0.0   5.2e-19   1.9e-15     259     449 ..     243     406 ..     130     411 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.7e-07
  Amidohydro_3  2 viDakGrlvlPGFvDsHtHlaggg 25
                   iDa+G+ ++P+++D HtHl  +g
    EGE27619.1 76 LIDAQGKWLTPALIDCHTHLVYAG 99
                  7******************87666 PP

  == domain 2  score: 57.3 bits;  conditional E-value: 5.2e-19
  Amidohydro_3 259 dfedealaelvaaadergldvaihaigdaavd..dvldafeaaaekngnqdrrrlehaegvtesqiervaalqvaagvqpvfnf...edelldsrlg 350
                    f +++++++++ a+  gl+v +ha + ++ +  ++++ f+            +++h e ++++ i+r+a  +   gv + ++f   +         
    EGE27619.1 243 AFNKQQVKKVFEVAQSLGLPVKLHAEQLSDMSggALVASFDGL----------SADHIEYLSDDSIQRMAQSGT-VGVLLPTAFyvlK--------- 319
                   477899************************9976777777554..........9***************98765.5566566663431......... PP

  Amidohydro_3 351 perargstpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvlda 447
                       ++++p+  ++++gv++a ++D++ g+  + + + a++m  t           +l+ eeala +T ++Akalgl+d kG +++G+dAD++++d+
    EGE27619.1 320 ---ETQLPPIDKMRQQGVSMAISTDCNPGTSPSTSILLAMNMACTLF---------KLTPEEALAGTTLNAAKALGLQDSKGKIAIGYDADIALWDI 404
                   ...3678******************8888888888888888877754.........48**************************************7 PP

  Amidohydro_3 448 dp 449
                   ++
    EGE27619.1 405 ER 406
                   64 PP

>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.7e-05      0.06     255     319 ..     319     386 ..     310     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
                  -TTTT-CHHHHHHTT-EEEE--B.SCCCCT-S.HHHHHHHHHHHHT--.HHHHHHHHHHHHHCSSS-H CS
  A_deaminase 255 leyaenPlkeflerglnvslntD.DPlqfgtt.LieeYaiaaqvfkls.eedlaelarNsvkqsflsa 319
                  +e +  P+++  ++g+ ++++tD +P  + +t +   +++a   fkl+ ee la  + N++k+ +l++
   EGE27619.1 319 KETQLPPIDKMRQQGVSMAISTDcNPGTSPSTsILLAMNMACTLFKLTpEEALAGTTLNAAKALGLQD 386
                  5666779****************99***99999**************944569999999999888765 PP

>> ILEI  Interleukin-like EMT inducer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.4e-05       0.3       4      62 ..      18      78 ..      17      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.4e-05
        ILEI  4 nvvvvdektgkvldsksFdty.eeesk..rlveflksipdgsiVlvavkdeassnlsdeark 62
                n+++++ + g  ld++s +t+ + ++   +l+++  +i+dg+iV +  +d+ass   d++++
  EGE27619.1 18 NIATMNSDFGFHLDNQSNQTTkT-ATPygQLTNHAIGINDGKIVWIGHHDDASSFTADRLID 78
                89999999999999999999532.33378***********************9888887776 PP

>> SapC  SapC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.026        93     170     200 ..     129     159 ..     124     166 .. 0.83
   2 ?    7.2   0.0   0.00096       3.5     130     207 ..     232     309 ..     227     314 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.026
        SapC 170 ddgeklnlsglytideekLnaLsdealeelr 200
                 + +++ ++++ly+ +e++L+aL +e +++l+
  EGE27619.1 129 NATRQASFDELYAQSEKRLKALLAEGVATLE 159
                 55678899**************999999886 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00096
        SapC 130 lekvlefleeleegkertqafiaaLeeldLlepvelkvtlddgeklnlsglytideekLnaLsdealeelrkkgaLal 207
                 +++v +f+e+++ +k++ +++++  ++l+L ++++++   d      ++ +   + ++++ Lsd+ ++++ ++g + +
  EGE27619.1 232 VDAVDAFCENIAFNKQQVKKVFEVAQSLGLPVKLHAEQLSDMSGGALVASFDGLSADHIEYLSDDSIQRMAQSGTVGV 309
                 667889************************888888877777777779*************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3252.88
//
Query:       EGE27620.1  [L=305]
Description: hypothetical protein EA1_01997 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-21   75.1  44.0    1.2e-10   41.7  16.7    2.1  2  EamA      EamA-like transporter family
  ------ inclusion threshold ------
        4.1    7.5  10.8        0.7    9.9   0.5    3.0  2  TMEM234   Putative transmembrane family 234


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7  16.7   1.3e-14   1.2e-10       3     136 ..      22     153 ..      20     154 .. 0.90
   2 !   39.5  19.3   6.3e-14   5.7e-10       2     133 ..     165     296 ..     164     297 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.3e-14
        EamA   3 gillallaalfwaiyfvlskil.lrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnasli.ts 99 
                 g+l+ ++ +++w++ ++++++  +  +  + ++ +rf ia+++ll+i+++k+  +        + ll+l+l+g++ + ++ + ++ + +++  +++ + 
  EGE27620.1  22 GYLFTFITMCIWGAFGLMARMNaYWHIQIWDVLLLRFGIAAAVLLPILWWKKDYQ----FLFDFKLLILALVGSIGYCIFVYNGFFYAPVAHGVVFlNG 116
                 99*****************87646666777********************99999....4445677999999999999*************88777699 PP

        EamA 100 lePvftlilsvlllgekltlkqllgivlillGvllil 136
                 + P+f+++++++ l+ ++   + +g+ +i++ +ll++
  EGE27620.1 117 TFPLFAALIGYIMLRSPIDRQTGIGLSIIVMTLLLMT 153
                 ********************************99986 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 6.3e-14
        EamA   2 lgillallaalfwaiyfvls.killrkvspl.tltfvrfliagillliiallkegklaklslkdwlll.lllgllgtvlafllffyalkktsasnasli 97 
                 +g+l+++++ l+w++  vl  k+ ++ ++ +  ++ ++ +i +++  i++ +  ++    +++++++  ++ g++ +++a l +  a+ k++  +a+ i
  EGE27620.1 165 RGDLMFIASGLCWGLFSVLLrKWSFSAWHIMcGVAIWSAVIYSLIYAIFITPAFHTA---TPTHLAIQgIFHGIFVVIIATLTYAEAVAKIGIFKAGSI 260
                 699*****************6666777777655555666666666666666666666...888999998****************************** PP

        EamA  98 tslePvftlilsvlllgekltlkqllgivlillGvl 133
                  +l+P ++ i++v llge l+ + ++g++ + +G+l
  EGE27620.1 261 ANLAPFIASIIAVPLLGEMLNTTLVMGLIGMAIGAL 296
                 *********************************986 PP

>> TMEM234  Putative transmembrane family 234
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5   7.8e-05       0.7      51     115 ..      84     152 ..      62     153 .. 0.79
   2 ?   -0.3   4.2      0.12     1e+03       4      95 ..     173     279 ..     170     296 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.8e-05
     TMEM234  51 lllNqsgSvlfflllgk....adlslavpiaNslafvfTvltelllgekvlkkktvlgmllvvvgialc 115
                 l+l ++gS+ + + + +    a+++ +v+  N    +f +l+++++ +  + ++t +g+ ++v+ + l+
  EGE27620.1  84 LILALVGSIGYCIFVYNgffyAPVAHGVVFLNGTFPLFAALIGYIMLRSPIDRQTGIGLSIIVMTLLLM 152
                 3456667766655554333339*****************************************999887 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
     TMEM234   4 vgilWGitnPllkrgskgleevkeksklsq.lllelkf...............lllrlkyliplllNqsgSvlfflllgkadlslavpiaNslafvfTv 86 
                  g++WG+   ll++ s    ++    ++++ ++++l +               l+ +  +   + +   + + +  +++k+ +  a  iaN   f++ +
  EGE27620.1 173 SGLCWGLFSVLLRKWSFSAWHIMCGVAIWSaVIYSLIYaifitpafhtatpthLAIQGIFH-GIFVVIIATLTYAEAVAKIGIFKAGSIANLAPFIASI 270
                 5667777666666666555555444444332333333232222222222221111111111.1222334555566666666666666677777777777 PP

     TMEM234  87 ltelllgek 95 
                 +   llge 
  EGE27620.1 271 IAVPLLGEM 279
                 766666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2228.22
//
Query:       EGE27621.1  [L=249]
Description: electron transfer flavoprotein alpha/beta-subunit-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-45  153.6   2.8    6.8e-45  153.2   2.8    1.1  1  ETF             Electron transfer flavoprotein domain
     0.0062   16.2   0.6       0.01   15.5   0.6    1.4  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   2.8   7.6e-49   6.8e-45       9     181 ..      31     206 ..      25     207 .. 0.96

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 7.6e-49
                 .CCCE-HHHHHHHHHHHHHHHHHT.--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHHHHC--SEEEEESSCC.H..HH CS
         ETF   9 vdgklnpvdlealeaArrlkekag.gevtavvvGppeaeealrealaamGadkvilvddpalagydaeatakalaalikkedpdlvlagatai.g..kq 103
                 +++++np+++ a+e+A+rlkek+   e++av++G++++ e++r ala  Gad+ ilv+++a a  +++++ak+l+ ++++e++++vl+g++ai +  +q
  EGE27621.1  31 AKMSVNPFCEIAIEEAVRLKEKGVaSEIIAVSIGTSQSSEQIRSALA-LGADRGILVETDAKA--QPLQVAKILKGVAEAEGVQIVLLGKQAIdDdnNQ 126
                 5899******************445**********************.*************98..9***************************66**** PP

                 HHHHHHHHCT-EEEEEESEEEEETCCEEEEEECCCCTEEEEEE-TSSSEEEEE-TTSS--.....--S-TT---EEEE--HHH CS
         ETF 104 vaprlAalLgvplitdvteleveggkltvtRpieggnglaevveadlpavltvrpgafep.....aaimaakkkeveevevad 181
                 ++++lAal+gv++ t ++e+ veg+k++vtR+i+g  gl ++v ++lpav+t++ +++ep     ++imaakkk++ + ++ad
  EGE27621.1 127 TGQMLAALMGVGQGTFASEVVVEGDKVHVTREIDG--GL-QTVALPLPAVITTDLRLNEPrfpklPNIMAAKKKPLDTKSPAD 206
                 ***********************************..**.99**********************************9999876 PP

>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.6   1.1e-06      0.01      25      87 ..      17      77 ..       4     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-06
                    EE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESC...STGGGHHHHHH CS
  Ala_racemase_N 25 avvKanayghgavevaralaeggadgfgvatleEalelreagitapilvleg...fspeelaalae 87
                    + vKa+  g++++++ +      ++ f++  +eEa++l+e+g++ +i+ ++     s+e+++++++
      EGE27621.1 17 VRVKADESGVELANAKM----S-VNPFCEIAIEEAVRLKEKGVASEIIAVSIgtsQSSEQIRSALA 77
                    459**999999944433....5.99**********************9998874445666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1880.24
//
Query:       EGE27622.1  [L=309]
Description: electron transfer flavoprotein, alpha subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-40  136.4  13.5    1.4e-39  135.9  13.5    1.2  1  ETF        Electron transfer flavoprotein domain
    6.8e-35  119.0   2.4    1.2e-34  118.2   0.3    2.3  2  ETF_alpha  Electron transfer flavoprotein FAD-binding domain


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9  13.5   1.5e-43   1.4e-39       2     181 ..       4     170 ..       3     172 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 1.5e-43
                 EEEE-EC.CCCE-HHHHHHHHHHHHHHHHHT--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHHHHC--SEEEEESSCC CS
         ETF   2 lvlaehgvdgklnpvdlealeaArrlkekaggevtavvvGppeaeealrealaamGadkvilvddpalagydaeatakalaalikkedpdlvlagatai 100
                 lv+aeh+ + +l+p++l +++aA++     g +v+++v+G +++++a +ea +  G++kv+++d++a+a+ +ae+++ +++al+++  +++v+a+at++
  EGE27622.1   4 LVYAEHD-NKELKPATLATVTAAVQM----GSDVHLLVAGADCQAVA-QEATKVAGVSKVLVADNAAYANQLAENVSLLVKALAAD--YSHVVAPATTT 94 
                 89****7.******************....89*********999888.999999********************************..9********** PP

                 HHHHHHHHHHHCT-EEEEEESEEEEETCCEEEEEECCCCTEEEEEE-TSSSEEEEE-TTSS----S-TT---EEEE--HHH CS
         ETF 101 gkqvaprlAalLgvplitdvteleveggkltvtRpieggnglaevveadlpavltvrpgafepaaimaakkkeveevevad 181
                 gk+++pr+AalL+v++++d+t++ ++ +  t++Rpi++gn++a+v+++++++v++vr +afepa+   ++++ +e v+ a+
  EGE27622.1  95 GKNFLPRVAALLDVSMVSDITAVIDA-N--TFERPIYAGNAIATVKSSENVVVVSVRGTAFEPAEL--TGSASIEAVDIAE 170
                 **********************8887.6..*********************************655..5677888887764 PP

>> ETF_alpha  Electron transfer flavoprotein FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.14   1.3e+03      26      47 ..      42      63 ..      19      88 .. 0.77
   2 !  118.2   0.3   1.3e-38   1.2e-34       2      84 .]     189     272 ..     188     272 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.14
                HHHHHHHT-EEEE-HHHHTTTS CS
   ETF_alpha 26 eelaealgaavgasRavvdagw 47
                +++a++     g+s+++v ++ 
  EGE27622.1 42 QAVAQEATKVAGVSKVLVADNA 63
                6677777777888888877653 PP

  == domain 2  score: 118.2 bits;  conditional E-value: 1.3e-38
                 -TTT-S-EEEE-GGGSSGGGH.HHHHHHHHHHT-EEEE-HHHHTTTSS-CCCB-SSSS-----S-EEEES----HHHHGGGTT- CS
   ETF_alpha   2 dLeeakvvvsgGrGlkskenl.elleelaealgaavgasRavvdagwipeerqvGqtGktvaPklyiavGisGaiqhlaGmkes 84 
                 +L++a++vvsgGr+l+s en+ + +e la++lgaavgasRa+vdag++p++ qvGqtGk+vaP+lyia+GisGaiqhlaGmk+s
  EGE27622.1 189 ELTSANIVVSGGRALASGENFtKYIEPLADKLGAAVGASRAAVDAGFVPNDMQVGQTGKIVAPNLYIAIGISGAIQHLAGMKDS 272
                 79******************9559**********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2375.00
//
Query:       EGE27623.1  [L=258]
Description: tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-27   96.6   0.0    2.5e-27   95.8   0.0    1.3  1  SpoU_methylase  SpoU rRNA Methylase family
    0.00024   21.3   0.0    0.00046   20.4   0.0    1.4  1  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   2.7e-31   2.5e-27       4     142 .]     114     248 ..     112     248 .. 0.94

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 2.7e-31
                     EEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGCCSHHHTTE CS
  SpoU_methylase   4 vvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgkslseidlkekv 97 
                     ++l++++d gN+G+++Rt +a+g+ + v+++p++a+l++p+ +ra++ga++ + ++++  ++e+l++lk     l+ats+  +k +++ dl++++
      EGE27623.1 114 LILDGLQDLGNIGTLLRTTSAVGI-QTVITSPNTAHLWSPKCLRAGMGAHFSISIYEHIAVDEILQKLKTP---LYATSShTNKVIYDHDLTGPI 204
                     79**********************.5555699999**********************************99...9***996777788******** PP

                     EEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  98 alvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                     a+v+G E++G+++e+l++a   + +p+ g +eSLNv  A ++++y
      EGE27623.1 205 AWVLGHEGQGVRDEFLNNAIP-IALPQPGGQESLNVGIAGSVCFY 248
                     *******************96.99******************998 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   5.1e-08   0.00046       1      46 [.      31      77 ..      31      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.1e-08
  SpoU_sub_bind  1 liyGlhaVleaLksgrriekllvteg.radkrleellklakkrgikv 46
                   +i+G+h+V++ Lk+ + +++++v+e+  a++++ +ll+++  + i +
     EGE27623.1 31 VIEGVHLVEAYLKQTPAVHRIIVSESaTAHDEVLPLLSQIDPKQITI 77
                   59************999*********877777889999888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2115.37
//
Query:       EGE27624.1  [L=331]
Description: fructose-1,6-bisphosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-52  177.6   0.4    2.3e-52  177.2   0.4    1.2  1  FBPase      Fructose-1-6-bisphosphatase, N-terminal domain
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.022   14.5   0.0    1.5  1  NOG1        Nucleolar GTP-binding protein 1 (NOG1)
      0.036   13.6   0.0       0.92    9.0   0.0    2.2  2  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.4   3.9e-56   2.3e-52      13     186 ..       7     179 ..       1     182 [. 0.95

  Alignments for each domain:
  == domain 1  score: 177.2 bits;  conditional E-value: 3.9e-56
      FBPase  13 eeanatgeltallsalklalkiisskvrkaelvnllGlagaeNvtGdeqkklDvladeiliealkaseevkvlvSEEeeelivlerekegkyvvafDPl 111
                  +++a +el   l +l+ +  +is  + k++l+ + G ag +N++G+ qkklDv+a+++l +al+++ +++ ++SEE +e+     + +g   v fDPl
  EGE27624.1   7 LQSHASDELASTLGTLANSSIAISALLDKGALAGIHGEAGNQNIQGEAQKKLDVIANNLLLDALTKNPHCAGVASEELDEISPA--HDDGTLLVTFDPL 103
                 5567999**************************************************************************998..99*********** PP

      FBPase 112 DGSSnidtnvsvGtifsiyrkksedeetti.dvlqpGkeqvAAgyvvYGsstmlVltlgaGvngFtlDpslgefil 186
                 DGSSnid+n++vGtifsi + +  ++++t+ d+lq G  q+AAgy +YG+stml +tlg+Gv +F lDp++ e+  
  EGE27624.1 104 DGSSNIDINMTVGTIFSILPYQRVGSQATEaDFLQKGTSQLAAGYFIYGTSTMLAMTLGQGVVMFSLDPTTQEYLR 179
                 ********************99988888888***************************************999975 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.6e-06     0.022       6      38 ..     155     187 ..     153     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.6e-06
        NOG1   6 AiaALkhladavlFllDpseecgysleeQlsLl 38 
                 +++A++  +++v+F lDp+ + +  +++Q+++ 
  EGE27624.1 155 TMLAMTLGQGVVMFSLDPTTQEYLRIDNQVKID 187
                 68899999**********************985 PP

>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00015      0.92      28      98 ..      40     108 ..      14     108 .. 0.76
   2 ?    2.0   0.0     0.021   1.3e+02      77     127 ..     188     252 ..     174     284 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00015
                 EEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHH CS
  Inositol_P  28 elvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTkn 98 
                  ++ e++ ++ + + ++++d  ++ l+l+al ++ +   + +ee  ++      ++ +l +  DP+DG +n
  EGE27624.1  40 GIHGEAGNQNIQGEAQKKLDVIANNLLLDALTKNPHCAGVASEELDEISP--AHDDGTLLVTFDPLDGSSN 108
                 455555556777888999999*********99999999988877655555..55777799999*****876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.021
                 C...CT.SSSSSEEEEEEEEETHHHHHHT-..............SG-EEEEEEEETTEEEEEEEEETT CS
  Inositol_P  77 e...kseltedgltwivDPiDGTknFvrgi..............pqvaVsigllvegkpvlGviaqPl 127
                 e   ++ ++++++  ++DPi   k++++g               ++va +i+ +++  +  Gv   P+
  EGE27624.1 188 EsatEYAINASNYRYWLDPI---KEYINGLvagdmgirnkdynmRWVAAMIADVHRILIRGGVFMYPF 252
                 134568899999********...888888777777777777777777777776666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2721.36
//
Query:       EGE27625.1  [L=339]
Description: aspartate carbamoyltransferase catalytic subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-39  133.6   0.0    8.6e-39  132.9   0.0    1.3  1  OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl
    1.1e-26   93.8   0.0    3.1e-26   92.3   0.0    1.8  1  OTCace    Aspartate/ornithine carbamoyltransferase, Asp/Orn b
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.22   11.4   0.0    1.3  1  TSP_C     Thrombospondin C-terminal region


Domain annotation for each model (and alignments):
>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   0.0   1.4e-42   8.6e-39       1     147 [.      26     169 ..      26     170 .. 0.93

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 1.4e-42
                 S-BSSGGGS-HHHHHHHHHHHHHHHHHHHTTT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCTTTGGSTTSSCHHHHHHHHHH CS
    OTCace_N   1 rhllsledlskeeieelldlaaelkekvkkekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediqlssvskgrkEsleDtarvlsr 99 
                 rh++s+e l++ ++e ++d+a  + ++  k  +++ l+gkt+++lF+e+StRTr+ fe+A krlG++vl+l+ a     ss++kg  E+l+Dt+  l++
  EGE27625.1  26 RHFISVEGLTRPQLEGIIDKAMGYFDEDGKLINTTELSGKTVMNLFFENSTRTRTTFEAAQKRLGANVLNLDIA----RSSTNKG--ETLRDTLWNLEA 118
                 8*********************99999998999999************************************66....7889999..************ PP

                 HT.SEEEEEES..SHHHHHHHHHHH..SSEEEEEEETSSB-HHHHHHHHHHHH CS
    OTCace_N 100 yv.daiviRhp..gaeeleelakya..svpviNagdgdgeHPtQaLaDlltir 147
                 ++ d++v+Rh+  g   ++ +a     +v +iNagdg + HPtQa++D+lti+
  EGE27625.1 119 MSaDMFVVRHSasG--AAHYMATEVtpNVAIINAGDGWHAHPTQAMLDMLTIY 169
                 ***********554..47777754478************************97 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   5.2e-30   3.1e-26       2     156 ..     178     324 ..     177     325 .. 0.90

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 5.2e-30
                 C.EEEEESS.TTSHHHHHHHHHHHHCT-E.EEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEESSCHHHHTT-SEEEE--SSETTCCGGHH......HH CS
      OTCace   2 glkiafvGd.kknnvanslikllarlgmd.vvlvaPkglepdkevleeakknakksggsititedleeavkgaDvvytdvwvsmgeekere......er 92 
                 +l +a+vGd k+++va+s i +l+ lg+  ++++aPk+l p  + +       + +   + + + + + v++aDv++  +++     +er       + 
  EGE27625.1 178 ELSVAIVGDiKHSRVARSDISALTTLGVRdIRVIAPKTLLP--KGI-------ERY--GVLVFDGIDKGVADADVIIGLRIQ-----NERIgspllpST 260
                 689*************************99********766..344.......333..4778899*****************.....555556666688 PP

                 HHHHCCCSB-HHHHHHS-TT-EEEE-S---BTTTB-HHHHTSTTBHHHHHHHHHHHHHHHHHHH CS
      OTCace  93 lkklkdyqvteellklakkdaivlHcLPakrgeEvtdeVfdsprsvvfeqaeNrlhtikAllvl 156
                  + +k y +te+ lklak++a+v+H+ P++rg E++++V d+++sv+ +q++N++ +++A+++l
  EGE27625.1 261 SEYFKMYGITEQRLKLAKPNALVMHPGPMNRGVEIASSVADGEQSVILKQVNNGIAVRMAVMAL 324
                 888999********************************************************86 PP

>> TSP_C  Thrombospondin C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.6e-05      0.22      82     129 ..      86     133 ..      69     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.6e-05
       TSP_C  82 fraeaekgiqlklvksttGpgealrnalwhtkdtknqvkllwkdpkkk 129
                  +  + + ++l    s+t+ ge+lr++lw+ ++++ ++ ++ +  + +
  EGE27625.1  86 QKRLGANVLNLDIARSSTNKGETLRDTLWNLEAMSADMFVVRHSASGA 133
                 35667788999**************************99998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2593.34
//
Query:       EGE27626.1  [L=162]
Description: tetratricopeptide repeat family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-31  108.5  22.6    6.4e-13   48.9   1.1    4.7  4  Sel1      Sel1 repeat
    2.4e-06   27.7  10.2       0.06   13.7   0.3    4.3  4  TPR_12    Tetratricopeptide repeat
    1.6e-05   24.5  17.1      0.017   15.0   0.7    6.0  6  TPR_1     Tetratricopeptide repeat
    6.5e-05   23.5  12.7      0.011   16.3   3.4    3.8  4  TPR_16    Tetratricopeptide repeat
    0.00016   21.9   8.3     0.0095   16.3   1.1    3.1  3  TPR_20    Tetratricopeptide repeat
    0.00019   21.3  18.3     0.0024   17.9   1.1    5.5  6  TPR_2     Tetratricopeptide repeat
    0.00056   20.1   5.8      0.032   14.5   0.2    2.3  2  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
      0.001   18.9   7.3       0.65   10.0   0.1    4.6  4  TPR_10    Tetratricopeptide repeat
     0.0069   17.0   7.8        2.6    8.9   0.2    3.8  3  TPR_6     Tetratricopeptide repeat
     0.0097   16.1  11.0       0.24   11.7   0.2    4.7  3  TPR_8     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   14.9   0.4       0.15   12.1   0.4    2.4  2  DUF627    Protein of unknown function (DUF627)
       0.18   11.5  16.7        7.4    6.4   0.2    4.6  4  TPR_11    TPR repeat
        1.3    9.8   6.8        2.7    8.9   0.1    4.0  5  TPR_4     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.8   1.4e-05     0.019       3      38 .]      37      66 ..      35      66 .. 0.82
   2 !   40.9   2.6   1.5e-13   2.1e-10       1      38 []      67     102 ..      67     102 .. 0.94
   3 !   48.9   1.1   4.6e-16   6.4e-13       1      38 []     103     138 ..     103     138 .. 0.95
   4 !   15.3   0.1   1.8e-05     0.024       1      24 [.     139     160 ..     139     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
        Sel1  3 AmyrLG.mfylylnGlgvpkDpekAiewyekAAeqGd 38
                A+++L+  +y  + G     +  kA+ew  kAA qGd
  EGE27626.1 37 AQFNLAdEYY--QQG-----NHAKAFEWTTKAAHQGD 66
                8999994444..666.....9***************7 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 1.5e-13
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a A+y+LG   +y  G+gv +D+ k +ewy kAA+qG+
  EGE27626.1  67 AQAQYNLG--VMYAQGKGVRQDYYKSVEWYTKAAKQGY 102
                 68******..777***********************96 PP

  == domain 3  score: 48.9 bits;  conditional E-value: 4.6e-16
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 a+A+++L+  ++y++G+gv +D++kA+ew+ kAA qG+
  EGE27626.1 103 ADAQFNLA--LMYYEGQGVRQDYHKAFEWFTKAAHQGH 138
                 68******..666************************9 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 1.8e-05
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpe 24 
                 a+A+ +LG   +y++G gv +D++
  EGE27626.1 139 AAAQSNLG--VMYDKGHGVRQDYQ 160
                 68******..777*********86 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   4.3e-05      0.06      45      70 ..      35      60 ..      19      62 .. 0.83
   2 ?    3.7   0.1     0.054        75      41      59 ..      63      80 ..      58      82 .. 0.79
   3 !   10.3   1.5   0.00049      0.68       3      71 ..      67     133 ..      65     133 .. 0.75
   4 !    8.0   0.1    0.0024       3.3      24      56 ..     121     150 ..     119     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.3e-05
      TPR_12 45 attlrnLgrlyralgryeeAlellee 70
                a +++nL++ y+++g++++A e+ ++
  EGE27626.1 35 AGAQFNLADEYYQQGNHAKAFEWTTK 60
                66889***************998665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.054
      TPR_12 41 hpltattlrnLgrlyralg 59
                h + a++++nLg +y a+g
  EGE27626.1 63 HQGDAQAQYNLGVMY-AQG 80
                778899999999999.444 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00049
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyra.lg...ryeeAlelleea 71 
                 a+a++nl++++ ++g+    ++ + k++e ++++   +  ++a +++nL+ +y++ +g   +y +A e++++a
  EGE27626.1  67 AQAQYNLGVMY-AQGK--GVRQDYYKSVEWYTKA--AKQ-GYADAQFNLALMYYEgQGvrqDYHKAFEWFTKA 133
                 66788888888.4444..559999*******988..655.7***********974244444777887777776 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0024
      TPR_12  24 ellekaleiarrllGpdhpltattlrnLgrlyr 56 
                 + ++ka e ++++    h + a+++ nLg +y+
  EGE27626.1 121 QDYHKAFEWFTKA--A-HQGHAAAQSNLGVMYD 150
                 5688999999777..4.7799********9996 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.7   1.2e-05     0.017       3      27 ..      37      61 ..      35      63 .. 0.90
   2 !    5.9   0.1     0.009        12       1      13 [.      67      79 ..      67      81 .. 0.89
   3 ?    2.5   0.1       0.1   1.4e+02      15      28 ..      85      98 ..      83     100 .. 0.87
   4 ?    3.8   0.1     0.042        57       1      12 [.     103     114 ..     103     116 .. 0.90
   5 ?    2.8   0.0     0.085   1.2e+02      15      27 ..     121     133 ..     119     135 .. 0.89
   6 ?    2.2   0.0      0.12   1.7e+02       1      13 [.     139     151 ..     139     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
                HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1  3 alynlGnayfklgkydeAleyyekA 27
                a +nl+  y+++g++ +A e   kA
  EGE27626.1 37 AQFNLADEYYQQGNHAKAFEWTTKA 61
                789***************9988887 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHH CS
       TPR_1  1 akalynlGnayfk 13
                a+a ynlG++y +
  EGE27626.1 67 AQAQYNLGVMYAQ 79
                789********86 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.1
                T-HHHHHHHHHHHH CS
       TPR_1 15 gkydeAleyyekAL 28
                ++y + +e y kA 
  EGE27626.1 85 QDYYKSVEWYTKAA 98
                6999********95 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.042
                 HHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayf 12 
                 a+a +nl+++y+
  EGE27626.1 103 ADAQFNLALMYY 114
                 7999*******8 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.085
                 T-HHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekA 27 
                 ++y +A e + kA
  EGE27626.1 121 QDYHKAFEWFTKA 133
                 699********99 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfk 13 
                 a a  nlG++y k
  EGE27626.1 139 AAAQSNLGVMYDK 151
                 67999******76 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.6   0.00012      0.16      33      62 ..      34      63 ..      18      66 .. 0.82
   2 !   16.3   3.4   8.1e-06     0.011       2      63 ..      40     100 ..      39     105 .. 0.85
   3 !    7.7   3.3     0.004       5.5      20      62 ..      94     137 ..      84     143 .. 0.78
   4 !    7.4   0.5     0.005       6.9       6      44 ..     113     149 ..     109     153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
      TPR_16 33 aaeAllllgdaalrqgrlaeAaalyraalr 62
                +a A+++l+d +++qg++a+A ++  +a+ 
  EGE27626.1 34 DAGAQFNLADEYYQQGNHAKAFEWTTKAAH 63
                789*********************999864 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 8.1e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq....grlaeAaalyraalra 63 
                 +la++++++g+ ++A    e+++k++  +  +a+A+++lg+++++     +++ + +++y +a+++
  EGE27626.1  40 NLADEYYQQGNHAKAF---EWTTKAA--HQGDAQAQYNLGVMYAQGkgvrQDYYKSVEWYTKAAKQ 100
                 79**********8765...8888888..777*************9988889999999999888754 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.004
      TPR_16  20 leaalkrdpssPdaaeAllllgdaalrq....grlaeAaalyraal..r 62 
                 ++ a k++      a+A+++l++++++     +++ +A +++ +a+  +
  EGE27626.1  94 YTKAAKQG-----YADAQFNLALMYYEGqgvrQDYHKAFEWFTKAAhqG 137
                 34444444.....9************999999***********998543 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.005
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaa 44 
                 ++  +g  +d  +a+e+++k++  +  +a+A+ +lg+++
  EGE27626.1 113 YYEGQGVRQDYHKAFEWFTKAA--HQGHAAAQSNLGVMY 149
                 67777888999***********..899*********987 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.1   6.9e-06    0.0095       5      43 ..      20      56 ..      16      60 .. 0.82
   2 ?    4.2   0.1      0.04        55      16      36 ..      61      81 ..      57      86 .. 0.86
   3 ?    5.2   0.1     0.019        26      18      61 ..      99     142 ..      90     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.9e-06
      TPR_20  5 apelaeleaalaanpddldarldlAlallaagryeeAle 43
                a+++a+l +++  +  d  a+++lA+ ++++g++++A+e
  EGE27626.1 20 AADMATLTRQA--QNGDAGAQFNLADEYYQQGNHAKAFE 56
                56666666654..557999******************97 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.04
      TPR_20 16 aanpddldarldlAlallaag 36
                aa+  d +a+++l   +++++
  EGE27626.1 61 AAHQGDAQAQYNLGVMYAQGK 81
                78899************9986 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.019
      TPR_20  18 npddldarldlAlallaagryeeAleqLleilkrdrkweddaar 61 
                 +    da+++lAl +++++ +++   + +e++ +  +    aa+
  EGE27626.1  99 KQGYADAQFNLALMYYEGQGVRQDYHKAFEWFTKAAHQGHAAAQ 142
                 455579***********998888888888888777766666665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.1   1.7e-06    0.0024       2      27 ..      36      61 ..      35      64 .. 0.92
   2 ?    2.3   0.1      0.16   2.2e+02       1      13 [.      67      79 ..      67      81 .. 0.86
   3 ?    3.0   0.1       0.1   1.4e+02      15      29 ..      85      99 ..      83     100 .. 0.88
   4 ?    2.7   0.1      0.12   1.7e+02       1      13 [.     103     115 ..     103     117 .. 0.89
   5 ?    4.4   0.1     0.035        49      15      28 ..     121     134 ..     119     136 .. 0.90
   6 ?   -1.7   0.0       3.1   4.2e+03       1      12 [.     139     150 ..     139     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.7e-06
       TPR_2  2 ealynlGlayyklgdyeeAleafekA 27
                 a +nl++ yy++g++++A e+  kA
  EGE27626.1 36 GAQFNLADEYYQQGNHAKAFEWTTKA 61
                589*******************9999 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.16
       TPR_2  1 aealynlGlayyk 13
                a+a ynlG  y++
  EGE27626.1 67 AQAQYNLGVMYAQ 79
                6799*****9986 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.1
       TPR_2 15 gdyeeAleafekAle 29
                +dy + +e++ kA +
  EGE27626.1 85 QDYYKSVEWYTKAAK 99
                7999*********87 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.12
       TPR_2   1 aealynlGlayyk 13 
                 a+a +nl+l yy+
  EGE27626.1 103 ADAQFNLALMYYE 115
                 7899*******96 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.035
       TPR_2  15 gdyeeAleafekAl 28 
                 +dy +A e+f kA 
  EGE27626.1 121 QDYHKAFEWFTKAA 134
                 79**********95 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 3.1
       TPR_2   1 aealynlGlayy 12 
                 a a  nlG  y 
  EGE27626.1 139 AAAQSNLGVMYD 150
                 578899999985 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   2.3e-05     0.032      15      54 ..      27      65 ..      10      81 .. 0.78
   2 !    7.9   1.1    0.0025       3.5      12      55 ..      94     137 ..      83     143 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.3e-05
                HH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC CS
      ANAPC3 15 llaaetespedayllAlclylngqykrAyellrkaklnsk 54
                  +a++ ++ + + lA  +y++g++ +A+e++ ka     
  EGE27626.1 27 TRQAQNGDAGAQFNLADEYYQQGNHAKAFEWTTKA-AHQG 65
                44577788888999********************9.3233 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0025
                 HHHHH.HHH--HHHHHHHHHHHHH....TT-HHHHHHHHHCTSHHHC- CS
      ANAPC3  12 aerllaaetespedayllAlclyl....ngqykrAyellrkaklnsks 55 
                 + ++   ++  +++ + lAl +y+    +++y++A+e++ ka  +++ 
  EGE27626.1  94 YTKAA--KQGYADAQFNLALMYYEgqgvRQDYHKAFEWFTKA--AHQG 137
                 44444..666677788899999985444678**********9..4443 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00047      0.65       7      24 ..      40      57 ..      35      61 .. 0.88
   2 ?    3.8   0.1      0.04        55       2      14 ..      67      79 ..      67      83 .. 0.84
   3 ?    0.7   0.2      0.38   5.3e+02       7      14 ..     108     115 ..     103     134 .. 0.73
   4 ?    5.2   0.0     0.015        21       2      12 ..     139     149 ..     138     152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00047
      TPR_10  7 NLanalrqrgrydeAeal 24
                NLa  ++q+g++++A ++
  EGE27626.1 40 NLADEYYQQGNHAKAFEW 57
                9**************886 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.04
      TPR_10  2 AsslnNLanalrq 14
                A ++ NL++++ q
  EGE27626.1 67 AQAQYNLGVMYAQ 79
                77999******65 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.38
      TPR_10   7 NLanalrq 14 
                 NLa ++++
  EGE27626.1 108 NLALMYYE 115
                 88888875 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.015
      TPR_10   2 AsslnNLanal 12 
                 A++++NL++++
  EGE27626.1 139 AAAQSNLGVMY 149
                 89********9 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2    0.0074        10       2      20 ..      37      55 ..      37      56 .. 0.92
   2 ?    3.7   0.2     0.082   1.1e+02       1      14 [.      68      81 ..      68     100 .. 0.78
   3 !    8.9   0.2    0.0019       2.6       1      19 [.     104     126 ..     104     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0074
                HHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 AlyklalsyrklgdtdkAl 20
                A+++la  y+++g+++kA 
  EGE27626.1 37 AQFNLADEYYQQGNHAKAF 55
                89***************95 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.082
                HHHHHHHHHHHHHH CS
       TPR_6  1 dAlyklalsyrklg 14
                +A+y+l+  y +++
  EGE27626.1 68 QAQYNLGVMYAQGK 81
                69********9863 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHH.H...HHHHHH CS
       TPR_6   1 dAlyklalsyrk.l...gdtdkA 19 
                 dA+++lal y++ +   +d+ kA
  EGE27626.1 104 DAQFNLALMYYEgQgvrQDYHKA 126
                 8***********55776666666 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2   0.00017      0.24       2      26 ..      36      60 ..      35      62 .. 0.86
   2 ?    3.3   0.9     0.089   1.2e+02       2      28 ..      68      98 ..      67     100 .. 0.60
   3 ?    3.9   0.3     0.053        74      15      27 ..     121     133 ..     103     134 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
                CHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAkeyyek 26
                 a +nl++ y ++g++ +A e+  k
  EGE27626.1 36 GAQFNLADEYYQQGNHAKAFEWTTK 60
                5889***************997655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.089
                CHHHHHHHHHHH.TT...-HHHHHHHHHHHH CS
       TPR_8  2 eayynlgsiylk.lg...dyeeAkeyyekal 28
                +a ynlg  y + +g   dy +++e+y ka 
  EGE27626.1 68 QAQYNLGVMYAQgKGvrqDYYKSVEWYTKAA 98
                6667777666431323338888888888885 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.053
                 T-HHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyeka 27 
                 +dy++A e++ ka
  EGE27626.1 121 QDYHKAFEWFTKA 133
                 4999999999998 PP

>> DUF627  Protein of unknown function (DUF627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   0.00011      0.15       2      28 ..      42      68 ..      41     143 .. 0.88
   2 ?   -0.2   0.0      0.69   9.5e+02       8      27 ..     120     139 ..     113     152 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      DUF627  2 AkdllargnhikALeiiedlisrhged 28
                A +++++gnh kA+e + ++  +   +
  EGE27626.1 42 ADEYYQQGNHAKAFEWTTKAAHQGDAQ 68
                889**************9998666554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.69
      DUF627   8 rgnhikALeiiedlisrhge 27 
                 r+++ kA+e + ++  +   
  EGE27626.1 120 RQDYHKAFEWFTKAAHQGHA 139
                 68999999998888755544 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2    0.0053       7.4       2      13 ..      43      54 ..      34      57 .. 0.79
   2 ?    6.3   0.2    0.0056       7.7      27      42 .]      66      80 ..      64      80 .. 0.78
   3 ?    5.4   3.1     0.011        15       8      40 ..      85     115 ..      84     116 .. 0.84
   4 ?   -0.4   0.0      0.71   9.8e+02      28      38 ..     139     149 ..     138     152 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0053
      TPR_11  2 dayyeqGkyeeA 13
                d+yy+qG+  +A
  EGE27626.1 43 DEYYQQGNHAKA 54
                788999988888 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0056
      TPR_11 27 naeayynLGlayykqG 42
                +a a ynLG+ y+ qG
  EGE27626.1 66 DAQAQYNLGVMYA-QG 80
                799******6555.55 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.011
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 ++y +++e+Y kA k  + +a+a +nL+l yy+
  EGE27626.1  85 QDYYKSVEWYTKAAK--QGYADAQFNLALMYYE 115
                 577888899999886..679***********95 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.71
      TPR_11  28 aeayynLGlay 38 
                 a a +nLG+ y
  EGE27626.1 139 AAAQSNLGVMY 149
                 67899***544 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1    0.0019       2.7       2      20 ..      36      54 ..      35      57 .. 0.91
   2 ?   -1.6   0.0       4.6   6.3e+03      11      17 ..      61      67 ..      61      69 .. 0.74
   3 ?    1.5   0.0      0.46   6.4e+02       1      13 [.      67      79 ..      67      80 .. 0.84
   4 ?   -1.2   0.0       3.6     5e+03       3      12 ..     105     114 ..     103     115 .. 0.78
   5 ?   -0.7   0.1       2.5   3.4e+03       1       7 [.     139     145 ..     133     149 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0019
       TPR_4  2 rallaLArallalGdldeA 20
                 a+ +LA  ++++G+++ A
  EGE27626.1 36 GAQFNLADEYYQQGNHAKA 54
                699**************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.6
       TPR_4 11 llalGdl 17
                ++++Gd+
  EGE27626.1 61 AAHQGDA 67
                5789997 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.46
       TPR_4  1 arallaLAralla 13
                a+a+++L+  +++
  EGE27626.1 67 AQAQYNLGVMYAQ 79
                6899****99875 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 3.6
       TPR_4   3 allaLArall 12 
                 a+ +LA  ++
  EGE27626.1 105 AQFNLALMYY 114
                 8899999875 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 2.5
       TPR_4   1 arallaL 7  
                 a+a+++L
  EGE27626.1 139 AAAQSNL 145
                 3455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1237.33
//
Query:       EGE27627.1  [L=53]
Description: tetratricopeptide repeat family protein, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-14   53.6   4.7    1.3e-11   44.7   0.6    2.1  2  Sel1      Sel1 repeat
  ------ inclusion threshold ------
       0.06   14.0   0.6       0.17   12.6   0.2    1.9  2  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.3     6e-05      0.54      28      38 .]      11      21 ..      11      21 .. 0.93
   2 !   44.7   0.6   1.5e-15   1.3e-11       1      34 [.      22      53 .]      22      53 .] 0.95

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6e-05
        Sel1 28 ewyekAAeqGd 38
                ewy kAA+qG+
  EGE27627.1 11 EWYTKAANQGY 21
                7********96 PP

  == domain 2  score: 44.7 bits;  conditional E-value: 1.5e-15
        Sel1  1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAA 34
                a+A+++L+  ++y++G+gv +D +kA+ewy kAA
  EGE27627.1 22 ADAQFNLA--LMYYEGQGVSQDDQKAVEWYTKAA 53
                68******..666********************9 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.47   4.2e+03       5      13 ..       8      16 ..       6      20 .. 0.71
   2 ?   12.6   0.2   1.9e-05      0.17       1      21 [.      23      47 ..      23      52 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.47
                HHHHHHHHH CS
       TPR_6  5 klalsyrkl 13
                k+++ y k+
  EGE27627.1  8 KIGEWYTKA 16
                688888773 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.9e-05
                HHHHHHHHHHHH.H...HHHHHHHH CS
       TPR_6  1 dAlyklalsyrk.l...gdtdkAle 21
                dA+++lal y++ +   +d +kA+e
  EGE27627.1 23 DAQFNLALMYYEgQgvsQDDQKAVE 47
                8***********5588888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 425.39
//
Query:       EGE27628.1  [L=260]
Description: hypothetical protein EA1_01632, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-36  125.7   0.0      3e-36  125.2   0.0    1.2  1  baeRF_family3   Bacterial archaeo-eukaryotic release factor f
    2.2e-07   31.2   0.0    1.9e-06   28.2   0.0    2.2  1  baeRF_family7   Bacterial archaeo-eukaryotic release factor f
    1.2e-05   25.4   0.0    2.8e-05   24.2   0.0    1.7  1  baeRF_family8   Bacterial archaeo-eukaryotic release factor f
    3.7e-05   24.1   0.0     0.0001   22.7   0.0    1.8  2  baeRF_family11  Bacterial archaeo-eukaryotic release factor f
    7.4e-05   23.2   0.0     0.0002   21.8   0.0    1.8  1  baeRF_family6   Bacterial archaeo-eukaryotic release factor f
  ------ inclusion threshold ------
      0.053   13.7   0.6      0.091   12.9   0.6    1.3  1  HDAC4_Gln       Glutamine rich N terminal domain of histone d


Domain annotation for each model (and alignments):
>> baeRF_family3  Bacterial archaeo-eukaryotic release factor family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.0     1e-39     3e-36       1     168 []      13     187 ..      13     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 1e-39
  baeRF_family3   1 rYwVLaLsqdkvrLfegtrdsleeveadgfPltl.eealgeedperqe.....ghgdkkseyrdedtrrFlreVdkalqevlsesplplvlaGvee 90 
                    +Y+VL+++ +++rL+ gt+ +l +++ ++ P++  +++l  +  ++++     +++++ s+++++++++F+++Vdk+lq+++++splp++l+G+ +
     EGE27628.1  13 NYYVLVVTSENARLLVGTNGTLIKEVVGDSPRQEvHDELA-FLIKNTTlptgsKSDRTGSSDDHSYLKEFMNRVDKSLQRIYNASPLPVILVGDSR 107
                    6******************************888688888.88888889998755667788899******************************** PP

  baeRF_family3  91 nlslfrevsknpsliegglegnp..aelsaeeLreaawplveayaeeeraealeeldeargrgkfaagldevwqaareGR 168
                     l ++++v++n+s+i g++++ p  ++++a+e+ + +++lve +++ + ++a  el++ar+++ + ++l++++++a+eG+
     EGE27628.1 108 TLGFYEQVCDNSSIILGKVDNLPhlKDGNAQEIIDGVQELVENQRKTRYETAQGELEKARNEKMVRTDLQQIYRSAVEGN 187
                    *******************99998999***************************************************96 PP

>> baeRF_family7  Bacterial archaeo-eukaryotic release factor family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   6.2e-10   1.9e-06       1     142 [.      14     148 ..      14     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 6.2e-10
  baeRF_family7   1 FylLalsqnkvrLyeatres.ieeieleevpssleealkldekekqlqfhtgsagggaavfhGqgggsddekeellrYfrkvdngvekllkkensp 95 
                    +y+L++  +++rL+ +t+ + i+e+  ++  ++++++l +  k+++l   ++s          + +gs+d+++ l +++++vd+ ++++ ++++ p
     EGE27628.1  14 YYVLVVTSENARLLVGTNGTlIKEVVGDSPRQEVHDELAFLIKNTTLPTGSKS----------DRTGSSDDHSYLKEFMNRVDKSLQRIYNASPLP 99 
                    89999999999999999866367777777778888888888888877666655..........5567778889*********************** PP

  baeRF_family7  96 LvlAgvdylipiYrevnkYkhLleeaisgnp..dqlskeeLhekaweiv 142
                    ++l g+   +  Y++v + + ++ ++++  p  ++ +++e+ +   e+v
     EGE27628.1 100 VILVGDSRTLGFYEQVCDNSSIILGKVDNLPhlKDGNAQEIIDGVQELV 148
                    **********************999998877334556666666666665 PP

>> baeRF_family8  Bacterial archaeo-eukaryotic release factor family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   9.5e-09   2.8e-05       3     138 ..      13     153 ..      11     156 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 9.5e-09
  baeRF_family8   3 aayvLaLsqdsvrLvevsaelpaeevdvpelptdvadalgkasiegrsp...hgriqgsegqkvrlrkYaRkvdraLrpllkgqdlpLILaatepl 95 
                    ++yvL + ++++rL+  ++ +  +ev      ++v d+l     + + p   +  ++gs+     l++++ +vd+ L+ +++ + lp+IL++    
     EGE27628.1  13 NYYVLVVTSENARLLVGTNGTLIKEVVGDSPRQEVHDELAFLIKNTTLPtgsKSDRTGSSDDHSYLKEFMNRVDKSLQRIYNASPLPVILVGDSRT 108
                    6889999999999988888444444433444445555333322222223233444567777778899***************************** PP

  baeRF_family8  96 asifrsvssypelldegIegnpeels..deeLasaarevlddlya 138
                     + + +v+ +++ +   + + p  ++  ++e+ + ++e++++ ++
     EGE27628.1 109 LGFYEQVCDNSSIILGKVDNLPHLKDgnAQEIIDGVQELVENQRK 153
                    **********99998888777765555578888888888888776 PP

>> baeRF_family11  Bacterial archaeo-eukaryotic release factor family 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.3e-08    0.0001      17     117 ..      36     130 ..      13     154 .. 0.74
   2 ?   -3.2   0.0       3.3   9.9e+03      94     104 ..     175     185 ..     173     191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.3e-08
  baeRF_family11  17 vevtadlpaeevkvpglpkdaasaagkssindrsesgrlqgaegqkvrleqYarkvdkalrpvLagrdlPLiLaaaeplaslyrsvnsypkLlee 111
                      ev  d+p +ev+     +++a  ++++++    ++ + +g+  ++  l++++++vdk l+++ + + lP+iL++ +     y +v+++ +++  
      EGE27628.1  36 KEVVGDSPRQEVH-----DELAFLIKNTTL-PTGSKSDRTGSSDDHSYLKEFMNRVDKSLQRIYNASPLPVILVGDSRTLGFYEQVCDNSSIILG 124
                     3455555555544.....455555555555.4555677789999********************************************9999888 PP

  baeRF_family11 112 giegsp 117
                     ++++ p
      EGE27628.1 125 KVDNLP 130
                     877766 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.3
  baeRF_family11  94 plaslyrsvns 104
                     +l+++yrs+ +
      EGE27628.1 175 DLQQIYRSAVE 185
                     79999998755 PP

>> baeRF_family6  Bacterial archaeo-eukaryotic release factor family 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.7e-08    0.0002       2     145 ..      13     147 ..      12     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.7e-08
  baeRF_family6   2 rfylLaLsqdsvrLyevtnkqvkevelpedaPksleealgdeltggqlnvstrgggskeggayhGhnekdeekkidlenYyqavdkaLkeelenek 97 
                    ++y+L    ++ rL+ +tn ++ +  +  d P++    ++del     n++ ++g+        +  +++ +++  l++++++vdk L++ ++   
     EGE27628.1  13 NYYVLVVTSENARLLVGTNGTLIKE-VVGDSPRQ---EVHDELAFLIKNTTLPTGS-------KSDRTGSSDDHSYLKEFMNRVDKSLQRIYNASP 97 
                    69******************99884.55999*95...5567764444444444444.......7888999*******************9777666 PP

  baeRF_family6  98 aplvLaaleelqplfrkvnkypylaeeaisgspe..qlsaeelhekaeei 145
                     p++L++ +  +  + +v ++++++  ++++ p   + +a+e+ + ++e+
     EGE27628.1  98 LPVILVGDSRTLGFYEQVCDNSSIILGKVDNLPHlkDGNAQEIIDGVQEL 147
                    6********************99988777776641134455666655555 PP

>> HDAC4_Gln  Glutamine rich N terminal domain of histone deacetylase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6     3e-05     0.091      50      90 ..     131     171 ..     125     172 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
   HDAC4_Gln  50 hikqqqellalkrqqellekqrklekqrqerelekqrreqq 90 
                 h+k  +   +++  qel+e+qrk++ +  + elek r e+ 
  EGE27628.1 131 HLKDGNAQEIIDGVQELVENQRKTRYETAQGELEKARNEKM 171
                 9999999999*****************9999******9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1919.08
//
Query:       EGE27629.1  [L=741]
Description: isocitrate dehydrogenase, NADP-dependent [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
          0 1292.1   1.5          0 1291.9   1.5    1.0  1  IDH          Monomeric isocitrate dehydrogenase
  ------ inclusion threshold ------
      0.036   14.2   0.3       0.17   12.0   0.1    2.3  3  MHC_II_beta  Class II histocompatibility antigen, beta domain
        0.1   12.8   0.1        0.3   11.3   0.1    1.8  1  PsaN         Photosystem I reaction centre subunit N (PSAN or


Domain annotation for each model (and alignments):
>> IDH  Monomeric isocitrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1291.9   1.5         0         0       1     733 [.       5     737 ..       5     738 .. 1.00

  Alignments for each domain:
  == domain 1  score: 1291.9 bits;  conditional E-value: 0
                 EEEEEE-SHHHHHHHHHHHHHHHHHHGGGT-EEEEEE-SHHHHHHHH-GGGS-TTT----HHHHHHHHTTSTT-EEEE-----B-HHHHHHHHHHHHTT CS
         IDH   1 kiiytktDeaPalatysllPivkaftkaagievetkdislagrilaafpelLkeeqrvedaLaelgelakkpeaniiklPnisasvpqlkaaikeLqek 99 
                 +iiyt+tDeaPalat+sllPi++af ++ag+++ t+dislagrilaafpe+L++eq+++daLa+l+el+++p+aniiklPnisas+pql aaikeLq++
  EGE27629.1   5 TIIYTHTDEAPALATHSLLPIIRAFGATAGVDFVTSDISLAGRILAAFPEYLTQEQQTPDALAQLAELVTQPKANIIKLPNISASMPQLLAAIKELQAQ 103
                 69************************************************************************************************* PP

                 T-------SS-SSHHHHHHHHHHGCCSBS-SHHHH--B-EEEE--HHHHHHHHHS--------TT---EEE--SSSSHHHH-EEEE-SS-EEEEEEEEE CS
         IDH 100 GyklpdypeepktdeekeikarydkvlGsavnPvLreGnsdrrapkavkeyakknPhsmgewskdsktkvatmeegDfyeseksvtlekatkvkiefva 198
                 Gy+lpdyp++p+td+ek+i++rydk++GsavnPvLreGnsdrrapkavk++akk+Phsmg+wskds+++vatm+ gDf+++e+s t+++at+v++ f++
  EGE27629.1 104 GYQLPDYPTNPQTDQEKDIQKRYDKIKGSAVNPVLREGNSDRRAPKAVKNFAKKYPHSMGQWSKDSQSHVATMNGGDFFANEQSKTVADATTVSFIFTD 202
                 *************************************************************************************************** PP

                 TTS-EEEEEEEEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT-EEEE-B-CCCS-TTS-HHHHHHHHHHTHHHHHCTHHHHHHTT--GGGHHHHHH CS
         IDH 199 kdgevtvlkeklkleagevidatvlsakalkefleeqieeakeegvlfslhlkatmmkvsdPiifGhavkvffkdvfekyaeelkelgvnannGlgdll 297
                 ++g+++ l++ l+l+age+idat++s+kal +fl+eq+++ak+++vlfslh+katmmkvsdPiifGhav+vff+ vfe+y+++l+e+g+n+nnG+g+ll
  EGE27629.1 203 TQGNQSQLRKPLALKAGEIIDATMMSKKALLSFLKEQVQDAKQKDVLFSLHMKATMMKVSDPIIFGHAVRVFFAPVFEQYGDKLAEAGINVNNGFGHLL 301
                 *************************************************************************************************** PP

                 HHSSTS-HHHHHHHHHHHHHHGGGS--B-EEETTTTEETTS-TTTSBHHHHHHHHHHTTSEEE-TTS-EEEEEEE-S--TTTHHHHHHHHHHHHH-S-- CS
         IDH 298 akieklpeekkeeieadieavlekrpelamvdsdkgitnlhvpsdviiDasmpavirdsgkmwnkdgkekdtkaviPdrsyakvyqeviedckkngafd 396
                 a+++kl++++++ ++++i+++++++p++amvdsdkgitnlhvpsdvi+Dasmpa+ir+sg+mw+k+g++kdtkaviPd+sya+vyq+vi++c+++gafd
  EGE27629.1 302 ANLDKLDADTRTGVTDAIAQAYATNPDIAMVDSDKGITNLHVPSDVIVDASMPAMIRNSGRMWDKNGNAKDTKAVIPDSSYAHVYQAVIDFCREHGAFD 400
                 *************************************************************************************************** PP

                 TTT-----EEE--TTT-CGGGGGGSEEE-SSSEEEEEEETT--EEEEEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHH---EEEE--TTSHHHHHHH CS
         IDH 397 pttmGsvsnvGLmaqkaeeYGshdktfeieadGtvrvvdeegevllehevekgDiwracqtkdapirdWvklaverarasgtpavfWLdeerahdaeli 495
                 pttmGsv+nvGLmaqkaeeYGshdktfeie+dGtv+++d++g+vl +h+ve+gDiwracqtkda+++dWv lav+rar sgtpa+fWLd++rahdaeli
  EGE27629.1 401 PTTMGSVPNVGLMAQKAEEYGSHDKTFEIEHDGTVELIDDHGTVLSSHTVEAGDIWRACQTKDAAVKDWVSLAVNRARLSGTPAIFWLDKNRAHDAELI 499
                 *************************************************************************************************** PP

                 HHHHHHHCCS--TT--EEEE-HHHHHHHHHHHHTTT---EEEE-HHHHHHHHHHHHHHHHSSGGGSEEEEEBTTS-EEEESSSS---HHHHHHHHHHS- CS
         IDH 496 kkvekylkehdtegldikilspveatklslerirkgkdtisvtGnvlrDyltDlfPilelgtsakmlsivpllaGGglfetGaGGsaPkhvqqlleenh 594
                 kkv++yl + dt+gldi+il p++a+ +sler+++g dtisvtGnvlrDy+tDlfPilelgtsakmlsivpl++GGg+fetGaGGsaPkhvqq+ eenh
  EGE27629.1 500 KKVHHYLGDLDTDGLDIQILPPADACLASLERMKQGLDTISVTGNVLRDYNTDLFPILELGTSAKMLSIVPLMNGGGMFETGAGGSAPKHVQQFNEENH 598
                 *************************************************************************************************** PP

                 -----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT-S--SSTTS--HHHHHHHHHHHHHHHHHH-SS-HHHHHHHHHHHHHHHHTHHH CS
         IDH 595 LrWdslgeflalaasleelaekkenkkakvladtldkateklLendksPsrkvgelDnrgshfylalywaealaaqtedaelkakfakvakeleeneek 693
                 LrWdslgeflala+s+e+la++++n+ka+vla+tld+ateklL ndksP+rkvgelDnrgshfyla+yw++alaaq++d+++++kfa++ak+l++ne++
  EGE27629.1 599 LRWDSLGEFLALAVSFEHLAQTTNNAKAQVLAETLDRATEKLLLNDKSPKRKVGELDNRGSHFYLAMYWSQALAAQNSDTAMADKFAPIAKALSDNEDT 697
                 *************************************************************************************************** PP

                 HHHHHHHTTTS----S-SSS--HHHHHHHH---HHHHHHH CS
         IDH 694 iveelaaaqgkpvdigGyykpdeekvekamrpsatlnail 733
                 iv+el+++qg++vdigGyy+pd +k+++amrps+tl++il
  EGE27629.1 698 IVAELNQVQGQSVDIGGYYAPDFAKTAAAMRPSQTLEQIL 737
                 **************************************98 PP

>> MHC_II_beta  Class II histocompatibility antigen, beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.7   1.6e+04      27      47 ..     164     184 ..     162     186 .. 0.83
   2 ?   -3.9   0.0       2.6   1.5e+04      56      66 ..     529     539 ..     527     540 .. 0.86
   3 ?   12.0   0.1   2.9e-05      0.17      19      54 ..     592     626 ..     588     637 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.7
                  EEETTTSSEEESSGGGHHHHH CS
  MHC_II_beta  27 rfDsdvgefvavtelgrplae 47 
                  ++  d  ++va   +g ++a+
   EGE27629.1 164 QWSKDSQSHVATMNGGDFFAN 184
                  688889999999999999887 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.6
                  HHHHHTHHHHT CS
  MHC_II_beta  56 lerlraevdtv 66 
                  ler+++++dt+
   EGE27629.1 529 LERMKQGLDTI 539
                  99*******97 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 2.9e-05
                  EETTEEEEEEETTTSSEEESSGGGHHHHHHHHTSHH CS
  MHC_II_beta  19 iyNkeelvrfDsdvgefvavtelgrplaeywNkqkd 54 
                   +N+e ++r+Ds +gef a+    + la+  N+ k+
   EGE27629.1 592 QFNEENHLRWDS-LGEFLALAVSFEHLAQTTNNAKA 626
                  59*********9.7*****************99875 PP

>> PsaN  Photosystem I reaction centre subunit N (PSAN or PSI-N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1     5e-05       0.3      26      66 ..     605     645 ..     585     654 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5e-05
        PsaN  26 aallgLaavlavtaaaaasakagvideyLekskankeLndk 66 
                  + l+La+ +   a+++ +aka+v+ e L+++     Lndk
  EGE27629.1 605 GEFLALAVSFEHLAQTTNNAKAQVLAETLDRATEKLLLNDK 645
                 57899****************************9999***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5070.56
//
Query:       EGE27630.1  [L=348]
Description: putative DNA-binding/iron metalloprotein/AP endonuclease, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.4e-102  340.9   0.0   7.3e-102  340.7   0.0    1.0  1  Peptidase_M22   Glycoprotease family
    2.5e-07   30.7   0.0    5.1e-07   29.7   0.0    1.5  2  Carbam_trans_N  Carbamoyltransferase N-terminus
  ------ inclusion threshold ------
      0.041   13.0   0.0      0.063   12.4   0.0    1.2  1  AnmK            Anhydro-N-acetylmuramic acid kinase


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.7   0.0  1.2e-105  7.3e-102       2     271 .]      29     315 ..      28     315 .. 0.97

  Alignments for each domain:
  == domain 1  score: 340.7 bits;  conditional E-value: 1.2e-105
                    CEXEEEEEEEEE....SSSSHHHHHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCC CS
  Peptidase_M22   2 vlanvvasqkelhakyGGvvPelasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaa 97 
                    vl++v++sq++lha yGGvvPelasr H ++l+pl +e+l++a+++++d+da+a+tkgPGl+++L+ G+ f+++la++l++P vgV+h+e+h+la+
     EGE27630.1  29 VLSQVLYSQINLHATYGGVVPELASRDHIRKLVPLFNEMLDQANITKSDIDAVAYTKGPGLIGALMTGALFGRTLAYGLGVPAVGVHHMEGHLLAP 124
                    89********************************************************************************************** PP

                    HCT.SEC.SSC.EEEEESSSTEEEEEECT.TEEEEEEEESSSEHHHHHHHHHHHHT..SSCCHHHHHHHCTC..S.......EET..TEEE.CHHH CS
  Peptidase_M22  98 rle.eke.efP.vvllvsGghtqvylvke.gryeilgetlddaagealdkvarllglpypggpkieklakeg..kkiefprplkg..ldfsfsGlk 185
                     l  +++ +fP v+llvsGght+++ +++ g y+ilge++dda+ge++dk+a++l+lpypggp+ieklak+g  +++e+prp+ +  ldfsfsG+k
     EGE27630.1 125 LLAsDDPpSFPfVCLLVSGGHTMLVRADGvGVYQILGESIDDAVGECFDKTAKMLKLPYPGGPNIEKLAKNGnpHAYELPRPMLHkgLDFSFSGMK 220
                    **964448****************************************************************9999********99********** PP

                    HHHHHHHST..T.......HHHHHHHHHHHHHHHHHHHHHHHHHHCTBSEEEEESGGGGXHHHHHCHCCHHHHTTSEEEXXXHHHHSSXCHHHHH CS
  Peptidase_M22 186 tavlkelek..e.......vedlaasfqeavvdhlvekteralklpkakelvilGGvaankrLrealeeeaeelglkliiPplkyctdnaamiaw 271
                    ta+++++++  +       ++d+aasf+ avvd+lv+k+ +al+ +++++lv++GGv+an+ Lr++l+e  ++++++++  p ++ctdn+amia+
     EGE27630.1 221 TAIHNLIKDtpNaqsdpatRADIAASFEYAVVDTLVKKCTKALQMTGIRQLVVAGGVSANQTLRRTLTETLRQIDASVYHAPTELCTDNGAMIAY 315
                    *******554437899****************************************************99888********************97 PP

>> Carbam_trans_N  Carbamoyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.77   4.6e+03      51      72 ..      67      88 ..      63      95 .. 0.81
   2 !   29.7   0.0   8.6e-11   5.1e-07     243     315 ..     219     290 ..     188     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.77
  Carbam_trans_N 51 aleeagvelsdiDqivfdeidg 72
                    +l++a + +sdiD +++ + +g
      EGE27630.1 67 MLDQANITKSDIDAVAYTKGPG 88
                    5788999999***999987766 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 8.6e-11
  Carbam_trans_N 243 skkkvhdffeasalrlkearekdedlaAsiqvflErlvvevlnivyeklkirnLclaGGvalNiklNsalles 315
                     +k ++h++++++  + +  ++   d+aAs+++++ +++v+   ++ + ++ir+L +aGGv++N +l   l e+
      EGE27630.1 219 MKTAIHNLIKDTP-NAQSDPATRADIAASFEYAVVDTLVKKCTKALQMTGIRQLVVAGGVSANQTLRRTLTET 290
                     4667888888877.3444444457***************************************9998888775 PP

>> AnmK  Anhydro-N-acetylmuramic acid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     1e-05     0.063     259     318 ..     238     299 ..     210     327 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1e-05
                 H..HHHHHHHHHHHHHHHHHHHHHH.-TT.--EEEEESGGGG-HHHHHHHHHHSTTSEEEEG CS
        AnmK 259 alpeDvqatLveltavtiadallka.qad.aerllvcGGGaknpvlmarlaallpevevest 318
                 a  +D+ a      + t++ +++ka q +  ++l+v+GG + n  l ++l+++l +++ +  
  EGE27630.1 238 ATRADIAASFEYAVVDTLVKKCTKAlQMTgIRQLVVAGGVSANQTLRRTLTETLRQIDASVY 299
                 3368999999988999999999875244469***********************99876543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2761.98
//
Query:       EGE27631.1  [L=101]
Description: hypothetical protein EA1_01627 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.15   11.6   0.5       0.17   11.4   0.5    1.1  1  NTP_transferase  Nucleotidyl transferase


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   9.6e-06      0.17      36     102 ..       3      72 ..       1      79 [. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.6e-06
                      HHHHHHHHTT-SEEEEEEETTTH...HHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTHHHHTTSSE CS
  NTP_transferase  36 atlsrlansgieeiivvltqehs...flveeqlkegskfgvevlialepegkgtAdAvalaaelledeks 102
                      atl++l + + +  + +  + h+   +  ++ ++ +++++v +  ++e+  k tAdA++++++   de +
       EGE27631.1   3 ATLKQLKQTQANPAVSIFVKTHRthpENEQDAIALKNQLKVAEDRITEEHDKRTADAILVNITAQTDELD 72 
                      5666666655555555544444400045556677778888********************9999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1050  (0.0585643); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 816.41
//
Query:       EGE27632.1  [L=34]
Description: Cof-like hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00093   19.0   0.0    0.00095   19.0   0.0    1.0  1  Hydrolase_3  haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.3e-08   0.00095     228     253 ..       1      26 [.       1      28 [. 0.95

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.3e-08
                  ETTS-HHHHHHSSEEE--GGGTHHHH CS
  Hydrolase_3 228 mgnaseevkkaAdyvtksnnedGVak 253
                  mgna++ +k++A+ +++ +++dG+ k
   EGE27632.1   1 MGNAHPILKQHAHIICPRHDQDGIEK 26 
                  9**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       164  (0.00914719); expected 358.6 (0.02)
Passed bias filter:                      126  (0.00702772); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 255.76
//
Query:       EGE27633.1  [L=194]
Description: hypothetical protein EA1_01523 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-23   84.1   0.1    1.6e-23   83.7   0.1    1.1  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
    3.3e-05   23.5   0.0    9.9e-05   22.0   0.0    1.7  2  S6PP             Sucrose-6F-phosphate phosphohydrolase
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.027   14.8   0.0    1.6  2  Hydrolase        haloacid dehalogenase-like hydrolase
      0.013   15.6   0.0       0.24   11.5   0.0    2.1  2  HAD_2            Haloacid dehalogenase-like hydrolase
        0.1   11.7   0.0       0.17   11.0   0.0    1.3  1  Trehalose_PPase  Trehalose-phosphatase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.1   4.5e-27   1.6e-23      43     222 ..      13     182 ..       9     185 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 4.5e-27
                  HHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTTCEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHC CS
  Hydrolase_3  43 ravlpvleelgldlpvialNGaliddekgkilykstiskedvkeiikllkennveillytedkvyvlnkeksekkkkeeektkkkkeeidseeelede 140
                   +v+++++e+g+d +++++NG++  +  gk l++ +++ ++vk+i++ ++++n+  +++t  ++++ n+  +++ k+     + + +  ++e+ +  +
   EGE27633.1  13 IEVRKLIDEVGID-YLLTMNGQYN-EFAGKKLFDFPLQYQQVKKILEVFEHHNIATAFMTRAEIFCFNQ--NHNLKTALGALDITPQPANKETFDFYQ 106
                  5799*********.*********9.99999999************************************..666666677777777777777788889 PP

                  SESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHS CS
  Hydrolase_3 141 eiakililkdkekldelekelksklnklltitssskgyleimpkgvsKgtalkklakelnisleeviafGDgeNDieMLeaa 222
                  +i++il ++++++ ++++  l++++    ++t+++++ ++++  + sK+ ++ +l+++lnis++  +afGD+ ND+eM+++ 
   EGE27633.1 107 PIYQILAFYEDHEAEKII--LPPDI----KTTRWHRYAVDVLDYQSSKARSIARLLNQLNISKSGAVAFGDDLNDMEMFKWW 182
                  9*****888888888875..67776....89*************************************************95 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.53   1.9e+03     156     167 ..      89     100 ..      83     105 .. 0.88
   2 !   22.0   0.0   2.8e-08   9.9e-05     154     198 ..     136     180 ..     127     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.53
                 EEEEEETT-SHH CS
        S6PP 156 dlDvlPkraskg 167
                 +lD+ P+ a+k+
  EGE27633.1  89 ALDITPQPANKE 100
                 79********97 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 2.8e-08
                 TTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHT CS
        S6PP 154 gkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeelli 198
                   ++Dvl  ++sk+++++ L+++l++  +  +  Gd  nD e+++
  EGE27633.1 136 RYAVDVLDYQSSKARSIARLLNQLNISKSGAVAFGDDLNDMEMFK 180
                 678****************************************95 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.2   4.4e+03      30      50 ..      52      72 ..      41      90 .. 0.73
   2 ?   14.8   0.0   7.5e-06     0.027     163     207 ..     136     180 ..     101     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.2
                HHHHHHHHHHCHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 30 laaaletgsehpigkalvaaa 50
                 +++le+   h i+ a+   a
  EGE27633.1 52 VKKILEVFEHHNIATAFMTRA 72
                456677777788887775444 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 7.5e-06
                 EEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 163 viasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaala 207
                  +a+d+      + +   +++++L+++++  +++GD +nD+++++
  EGE27633.1 136 RYAVDVLDYQSSKARSIARLLNQLNISKSGAVAFGDDLNDMEMFK 180
                 555555557778899999*************************87 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.051   1.8e+02      71     103 ..      40      71 ..      11      85 .. 0.75
   2 ?   11.5   0.0   6.6e-05      0.24     134     167 ..     147     178 ..     136     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.051
       HAD_2  71 eekkkkevkpydgvkelLeeLkeagyklgivTs 103
                 +++ + +   y++vk++Le  +++++  + +T 
  EGE27633.1  40 KKLFD-FPLQYQQVKKILEVFEHHNIATAFMTR 71 
                 34444.7788999**********9999998886 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.6e-05
       HAD_2 134 kKPdpeviekaleklklkkeeviyvGDsptDiea 167
                 +K  +++i+++l++l+++k+ ++ +GD  +D+e 
  EGE27633.1 147 SK--ARSIARLLNQLNISKSGAVAFGDDLNDMEM 178
                 55..899*************************97 PP

>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.8e-05      0.17     161     203 ..     145     184 ..     128     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.8e-05
                      ---HHHHHHHHHHTS--------EEEEEE-SSTTHHHHTTS-T CS
  Trehalose_PPase 161 gvsKGkaverlleslgsadseddfvlciGDdrtDedmFsvlrk 203
                        sK   ++rll++l+ +    + +++ GDd+ D +mF++ ++
       EGE27633.1 145 QSSKARSIARLLNQLNIS---KSGAVAFGDDLNDMEMFKWWEQ 184
                      4569999999****9999...99999*************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1474.60
//
Query:       EGE27634.1  [L=64]
Description: hypothetical protein EA1_01528 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-09   36.4   0.0    4.8e-09   36.3   0.0    1.0  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
     0.0024   17.5   0.0     0.0026   17.3   0.0    1.0  1  S6PP         Sucrose-6F-phosphate phosphohydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   5.3e-13   4.8e-09       1      46 [.      12      58 ..      12      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 5.3e-13
                 EEEEIIIII.S-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHH CS
  Hydrolase_3  1 ialDlDGTL.lnsdkkisektkeaikklkekgikvviATGRslravl 46
                 i+lD+D+TL ++++++i+++ k a+  lk++g+ ++iATGR    ++
   EGE27634.1 12 IFLDIDDTLyIKDEQRIPQSVKPALLALKNQGVLLAIATGRTWDYTH 58
                 89*******5555555*************************987665 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.9e-07    0.0026       2      50 ..       9      58 ..       8      63 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.9e-07
                SEEEEE-TBTTTB..S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHH CS
        S6PP  2 klllvsdLDntlv.dgdnealarlnelleaeerkdvllvfaTGRsldsak 50
                ++++  d+D+tl  + +++  ++ +  l a +++ vll +aTGR+ d + 
  EGE27634.1  9 PKIIFLDIDDTLYiKDEQRIPQSVKPALLALKNQGVLLAIATGRTWDYTH 58
                5899********955555555778877778**************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 502.95
//
Query:       EGE27635.1  [L=208]
Description: alkaline phosphatase-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-21   74.7   5.6    1.5e-20   73.9   5.6    1.4  1  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   5.6   8.3e-25   1.5e-20       1     118 [.      33     162 ..      33     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 8.3e-25
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgr........kalrrkllsekrvkalerlverygflallllrllpivPrdlv 85 
                  +Pse+++ aaG+++     +l+ ++++  +g+++Ga+  y++g +l +        ++++  l+    v  ++++++r+g ++++++r++p + r+l+
   EGE27635.1  33 IPSELIMPAAGFAAatgqmNLFAVIIAGTIGSIIGALPLYYIGTKLDKarlihltnRYGKYFLITANDVSNAQKWFDRHGKSVIFFGRMIPAI-RSLI 129
                  79999999999999788888888**************************9998888888888888888888**********************.**** PP

  SNARE_assoc  86 nyvaGltrvsfkrFflatfiGsipwalvyaylG 118
                  +++aG++++++ +F++ t +Gs++w+ ++ay+G
   EGE27635.1 130 SIPAGMAHMPLLPFLILTGLGSLIWSAILAYAG 162
                  *******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1568.63
//
Query:       EGE27636.1  [L=232]
Description: cell division protein FtsQ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-15   56.6   1.1    2.1e-14   54.3   0.3    1.9  2  FtsQ      Cell division protein FtsQ
    3.4e-07   30.4   1.2    2.2e-06   27.9   0.6    2.6  3  POTRA_1   POTRA domain, FtsQ-type
  ------ inclusion threshold ------
       0.19   11.2   0.0       0.32   10.5   0.0    1.3  1  DUF5527   Family of unknown function (DUF5527)


Domain annotation for each model (and alignments):
>> FtsQ  Cell division protein FtsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.12   7.3e+02      43      81 ..      56      96 ..      22     101 .. 0.66
   2 !   54.3   0.3   3.5e-18   2.1e-14       7     117 .]     107     219 ..     103     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.12
                HHHHHCCS-HHHHH...S-SEE-SS-TTEEEE-T.TS-EEE CS
        FtsQ 43 vlevlaelpeelkp..leiseialserrrwqlvlddgvevk 81
                 +  ++ + ++l +  ++is+++++e  +++   ++gv v 
  EGE27636.1 56 PIGKVQFFGADLVKihQTISQLTWVESANVRRDWNNGVVVS 96
                44455555555666888999998888888888444888775 PP

  == domain 2  score: 54.3 bits;  conditional E-value: 3.5e-18
                 E.EEEEETT--B-C........CC.B.SS-EEE......S-HHHHHCCS-HHHHH...S-SEE-SS-TTEEEE-T.TS-EEEEES....TTHHHHHHT- CS
        FtsQ   7 gedalidaeGevfea...deeaed.e.klPlltGpegsekevlevlaelpeelkp..leiseialserrrwqlvlddgvevklgreelaedleeklarl 98 
                 g d+l+da+G+v e+   +   +  + +l+ l G +++++++++ l++++++ +p   +++ + l++r+ w +++++g+++++ +e+ ++    kl  l
  EGE27636.1 107 GSDRLLDADGVVYEPaesS---QLmNpNLVNLHGQDTESQQIMQKLKRINTWYAPldVQVQDLILTPRQTWIIRFNNGMRIMVDHEDAEQ----KLYNL 198
                 6689**********94432...222435******999999*********************************************76666....99888 PP

                 CCHHHC............CCCT CS
        FtsQ  99 vkilpqlrlgre...ieyiDLR 117
                 +  l++  l ++   i+++DLR
  EGE27636.1 199 AIQLQSA-LANDfgrIDSVDLR 219
                 7777775.43334479*****9 PP

>> POTRA_1  POTRA domain, FtsQ-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.6   3.7e-10   2.2e-06      18      66 ..      49      97 ..      31     100 .. 0.83
   2 ?   -1.6   0.0      0.58   3.5e+03      16      45 ..     142     151 ..     134     162 .. 0.62
   3 ?   -0.7   0.0      0.31   1.9e+03      38      57 ..     201     221 ..     185     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 3.7e-10
                HHHHHHHTTSTT-GGGS-HHHHHHHHHH-TTEEEEEEEEETTTEEEEEE CS
     POTRA_1 18 eiikalgiekgtslfsldleaieqrleklpwvksasVrrqwPntleitv 66
                ++++a++  ++  +f+ dl +i q++ +l wv+sa+Vrr w n +++ v
  EGE27636.1 49 ALQQAIEPIGKVQFFGADLVKIHQTISQLTWVESANVRRDWNNGVVVSV 97
                6778888888899**********************************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.58
                 HHHHHHHHHTTSTT-GGGS-HHHHHHHHHH CS
     POTRA_1  16 seeiikalgiekgtslfsldleaieqrlek 45 
                 s++i++                    +l++
  EGE27636.1 142 SQQIMQ--------------------KLKR 151
                 444444....................4444 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.31
                 HHHHHHHH.-TTEEEEEEEEE CS
     POTRA_1  38 aieqrlek.lpwvksasVrrq 57 
                 +++++l+  + +++s+ +r++
  EGE27636.1 201 QLQSALANdFGRIDSVDLRYK 221
                 677888888888888888875 PP

>> DUF5527  Family of unknown function (DUF5527)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.3e-05      0.32      42      73 ..      10      41 ..       2      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.3e-05
     DUF5527 42 piiialvCiflllatflifvtlCkPaaldqsr 73
                 +ii+l+ if ll+ +l+     kP+++++++
  EGE27636.1 10 LMIIVLIAIFGLLTNYLLNNETVKPIVIEPNQ 41
                689***********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1833.71
//
Query:       EGE27637.1  [L=432]
Description: cell division protein FtsA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-13   50.8   0.2    9.9e-11   42.0   0.0    2.3  2  FtsA       Cell division protein FtsA
    8.7e-09   34.9   0.1    1.2e-06   27.8   0.1    2.4  2  PilM_2     Type IV pilus assembly protein PilM;
      1e-08   34.4   1.8    1.6e-07   30.5   1.7    2.2  1  MreB_Mbl   MreB/Mbl protein
    1.9e-05   23.8   0.1    3.4e-05   22.9   0.1    1.4  1  EutA       Ethanolamine utilisation protein EutA
     0.0024   18.2   0.8     0.0051   17.2   0.8    1.5  1  SHS2_FTSA  SHS2 domain inserted in FTSA
  ------ inclusion threshold ------
       0.16   10.6   0.3        5.2    5.6   0.0    2.2  2  Actin      Actin


Domain annotation for each model (and alignments):
>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0027         8      23      85 ..      30     176 ..       5     197 .. 0.64
   2 !   42.0   0.0   3.3e-14   9.9e-11       2      86 ..     206     347 ..     205     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0027
                 EEEES--HHHHHHH..........HHHHHT--HHHHHHHHHHH--S--................EEEEEHHHHH......................... CS
                 xxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxx......................... RF
        FtsA  23 lrvigvggngitkd..........iakalrtaveeAerikikyGsala................ekeigrkels......................... 70 
                 lrv  vg  + +            +  a++++v eA  ++   G ++                 +     +e++                         
  EGE27637.1  30 LRVSAVGLAHTDAFfggrvdhreyLLSAIHKSVREASDMA---GLQIIspvlcmasammnmqnmS-----NEVNidtadrmvtpehirqatqamsdqii 120
                 4444443333322244455555678889************...6666666667776666644441.....22324455566666777777777777777 PP

                 .........................................GGGGSTTHHHHHHHH CS
                 .........................................xxxxxxxxxxxxxxx RF
        FtsA  71 .........................................ggsalpnleelaera 85 
                                                           +++l++++ l+e+ 
  EGE27637.1 121 sqdrapfqmnrqlifledyhvqdakglmtdkicvashvidmPTNQLKQMISLVEQD 176
                 78888888888888888888888888888888888888888888888888888886 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 3.3e-14
                 EEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHHHHHHHT--HHHHHHHHHHH--S--.................EEEEEHHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxx............. RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigvggngitkdiakalrtaveeAerikikyGsala.................ekeigrkels............. 70 
                  +DiGag+t+v +++dg l++++ + +gg  ++ diak +++ +++A + k++ G++++                 ek++ r+el+             
  EGE27637.1 206 FIDIGAGMTKVCIYKDGILIYSHCLDMGGVTVDMDIAKECGILLADADSFKRQEGTLNRhkyssgavvtykrhtkhEKTMLRRELNqviearyrklfdk 304
                 69*******************************************************999999999898888877755555556658888999999999 PP

                 .....................GGGGSTTHHHHHHHH......H CS
                 .....................xxxxxxxxxxxxxxx......x RF
        FtsA  71 .....................ggsalpnleelaera......l 86 
                                      ggs++ +l ++ ++       l
  EGE27637.1 305 videidasllvsldagivlagGGSSMDGLLDFTRNHigmkvrL 347
                 999999***********************99999884433331 PP

>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   3.9e-10   1.2e-06     146     237 ..     162     259 ..     148     294 .. 0.82
   2 !    4.5   0.0     0.005        15     278     311 ..     321     354 ..     311     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 3.9e-10
      PilM_2 146 eaaglkakvvDvesyAleral......eliasqlpdkgkekvvaivdigasrttlsvlrdgkivYtreqafGgeqltqeivrrYglsleeaekkkrsg 237
                 ++ +lk +++ ve+  l+ a       +  + +l++++k++ v+ +diga +t++++++dg  +Y+    +Gg  +  +i+++ g+ l +a++ kr++
  EGE27637.1 162 PTNQLKQMISLVEQDDLQVASclfdgiAGAEYALSEDEKQAGVCFIDIGAGMTKVCIYKDGILIYSHCLDMGGVTVDMDIAKECGILLADADSFKRQE 259
                 5566777777777777777764444334566789999999****************************************************998875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.005
      PilM_2 278 ilLaGGtaslpgleelleeelgisttvanpfaem 311
                 i+LaGG +s+ gl +   +++g+++ ++     +
  EGE27637.1 321 IVLAGGGSSMDGLLDFTRNHIGMKVRLITNNPRV 354
                 9***********************9998554444 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   1.7   5.3e-11   1.6e-07      45     304 ..      98     348 ..      77     356 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 5.3e-11
                 HHHTTTTS-GTTEE.EE-SEETTEESSHHHHHHHHHH..HHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT-- CS
    MreB_Mbl  45 eAkkmlgktpgnik.avrPlkdGviadlevaeellky..fikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglp 140
                  A +m+  tp++i+ a++ ++d +i++ ++  ++ ++  f+++ + +++    +  icv s++ ++  + +k++ + +  ++ ++ +  +    Ga+  
  EGE27637.1  98 TADRMV--TPEHIRqATQAMSDQIISQDRAPFQMNRQliFLEDYHVQDAKGLMTDKICVASHVIDMPTNQLKQMISLVEQDDLQVASCLFDGIAGAEYA 194
                 577777..799995378899999999988888888872245777777666666667899999************9999999999999999888999988 PP

                 TTS...SS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEE CS
    MreB_Mbl 141 vee...psgnmvvdiGggttevavislggivtsksvrvaGdeldeaiikyirkkynlliGertaekikieigsavkeeeeekmeikGrdlvtglpkeve 236
                 ++e    +g   +diG+g t+v +   g +++s+ + ++G ++d +i k    +  +l+  + a++ k + g++  ++ ++   ++ +       +e +
  EGE27637.1 195 LSEdekQAGVCFIDIGAGMTKVCIYKDGILIYSHCLDMGGVTVDMDIAK----ECGILL--ADADSFKRQEGTLNRHKYSSGAVVTYKR---HTKHEKT 284
                 865222568899**********************************985....566666..67999******99998888766665544...2345666 PP

                 EEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE- CS
    MreB_Mbl 237 vsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkva 304
                 +  +e++++++   +++ +   +v++++ + L    +d givl+GGg+ + gl ++ ++++g++v++ 
  EGE27637.1 285 MLRRELNQVIEARYRKLFD---KVIDEIDASLLVS-LDAGIVLAGGGSSMDGLLDFTRNHIGMKVRLI 348
                 6777777777777777665...5677778888776.599**************************854 PP

>> EutA  Ethanolamine utilisation protein EutA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   1.1e-08   3.4e-05     136     185 ..     194     244 ..     182     330 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.1e-08
        EutA 136 alsk.ekstrvlniDiGGGtsnlalfkeGevidtacldvGGrlikidkdtk 185
                 als+ ek++ v  iDiG G + + ++k+G +i + cld+GG  + +d  ++
  EGE27637.1 194 ALSEdEKQAGVCFIDIGAGMTKVCIYKDGILIYSHCLDMGGVTVDMDIAKE 244
                 4565156788**********************************9997433 PP

>> SHS2_FTSA  SHS2 domain inserted in FTSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.8   1.7e-06    0.0051       5      78 ..      86     159 ..      83     160 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-06
                 .EEEEEEEEE-TTS-.E--HHHHHHHHHHH....CHTTEEEEEEEEEEEEETTTEEESB-TT-EESEEEEEEEEE CS
   SHS2_FTSA   5 ksvnskgvvaisged.eiteedvervleaakavaipedreilhvipqeyivDgqegikdPvGmsGvrLevevhvi 78 
                 +++n +++v+i + d  +t e+++++ +a++ + i++dr   ++  q   + +   ++d  G++ +++ v  hvi
  EGE27637.1  86 NMQNMSNEVNIDTADrMVTPEHIRQATQAMSDQIISQDRAPFQMNRQLIFLEDY-HVQDAKGLMTDKICVASHVI 159
                 6789999999999999************************************98.5*************999998 PP

>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.014        40     143     186 ..     203     244 ..     181     299 .. 0.77
   2 ?    5.6   0.0    0.0017       5.2     308     342 ..     301     335 ..     296     356 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.014
       Actin 143 tglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkel 186
                   + +D+Ga++t v+   dG+ +  +  ++d+gG +++  +++ 
  EGE27637.1 203 GVCFIDIGAGMTKVCIYKDGILIYSH--CLDMGGVTVDMDIAKE 244
                 56789**********99999999865..6889998888877764 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0017
       Actin 308 livaainacdvdlrpeLlanivvtGGnsllpglte 342
                 l+ + i+++d+ l  +L a iv++GG s++ gl +
  EGE27637.1 301 LFDKVIDEIDASLLVSLDAGIVLAGGGSSMDGLLD 335
                 66678999************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 3530.93
//
Query:       EGE27638.1  [L=373]
Description: cell division protein FtsZ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-40  139.1   2.6    4.8e-40  137.9   2.6    1.6  1  Tubulin    Tubulin/FtsZ family, GTPase domain
    1.1e-24   86.6   2.1    4.1e-24   84.7   2.1    2.1  1  FtsZ_C     FtsZ family, C-terminal domain
  ------ inclusion threshold ------
       0.57    9.3   6.8        5.4    6.1   2.7    3.0  2  Tubulin_2  Tubulin like


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   2.6   8.1e-44   4.8e-40       1     195 [.      14     173 ..      14     175 .. 0.96

  Alignments for each domain:
  == domain 1  score: 137.9 bits;  conditional E-value: 8.1e-44
                 EEEEEEEHHHHHHHHHHHHH...HHHCH....HHHT.....TTEEEEE....EEESBHHHHHTS-GS......EEEE--CCCCTTC--TT-HHHHHHHH CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdgdslesfFsesgkveyiprsvaidtdpqvlneikagselfnpnklllgkegagnngaggypevgkeaa 99 
                 +iiv+gvG++G+++++++++    + ++              g  +++     ++td q+ln++ a       nk+++g + ++++gag++pevg+ aa
  EGE27638.1  14 RIIVFGVGGGGGNAVEHMVR----Q-NV-------------LG-ITFV----CANTDLQALNKLSAP------NKIQIGADATRGLGAGANPEVGRNAA 83 
                 69******************....3.55.............56.7888....***************......************************** PP

                 HHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--GG.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHHCC CS
     Tubulin 100 eeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPsefsevvvepynailalkelieesdavividNdaLlki 195
                 e++++eir ++e+ ++    fita++gGGTG+G++pv+++++ke+  ++l+v+vv++P++f e++++   a  ++ +l +++d++i+i+Nd+L + 
  EGE27638.1  84 ESNEDEIRAMLEGYNM---AFITAGMGGGTGTGAAPVVARIAKEM--GILTVAVVTTPFSF-EGKRRAAAARNGIDALTQHVDSIITIPNDKLTQA 173
                 ****************...**************************..**************.*******************************986 PP

>> FtsZ_C  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   2.1   6.9e-28   4.1e-24       1      94 [.     222     315 ..     222     316 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 6.9e-28
                 EEEEEEEEEEESTTHHHHHHHHHHTSGGGT.--GGG-SEEEEEEEE-TT--HHHHHHHHHHHHHHS-TTSEEEEEEEE-TT--SEEEEEEEEES- CS
      FtsZ_C   1 GvAmmgvGeasgedraeeaaeaaisspLLd.vdlsgAkgvlvnitggsdltlkEveevaetireevdeeanvivGavideeledeirvtvvatgl 94 
                 G Ammg+G+asg +ra+ea e+ai+spLLd ++l++A+g ++ni g s ++++Ev +++   +  +de+a+v +G v d+++edei+vtvvatgl
  EGE27638.1 222 GHAMMGIGRASGTNRASEAMEKAIRSPLLDdLNLRNAQGLIINIIG-SGVSMDEVMSIVAIGEGMMDEDAHVFYGLVEDPDMEDEIHVTVVATGL 315
                 89******************************************85.689********************************************8 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1    0.0053        32       1      52 [.      16      58 ..      16      69 .. 0.72
   2 ?    6.1   2.7    0.0009       5.4     115     202 ..      70     138 ..      56     176 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0053
   Tubulin_2  1 lviGLGGtGgkvlaelrrrlreelgslelpdkvqFlyiDtdeneknrlkdat 52
                +v G+GG Gg++++++ r+    +        + F+++ td +++n+l  ++
  EGE27638.1 16 IVFGVGGGGGNAVEHMVRQN---V------LGITFVCANTDLQALNKLSAPN 58
                67799999998877665554...5......3579999999999999874333 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0009
   Tubulin_2 115 eGAGqiRtvGRlalfanleeirealrdaikrlrgsageeeglnvfVvgSLaGGTGSGiflDvayllrkilkeekqkvkiiglvllPdv 202
                  GAG ++ vGR a  +n +eir+ l+                  f+  ++ GGTG G +  va + +++ +     + ++++v++P  
  EGE27638.1  70 LGAGANPEVGRNAAESNEDEIRAMLEGY-------------NMAFITAGMGGGTGTGAAPVVARIAKEM-G-----ILTVAVVTTPFS 138
                 5899999999999999888888776543.............3569999999999999887666655443.2.....234455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3134.63
//
Query:       EGE27639.1  [L=314]
Description: PHP-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-08   35.5   0.1    1.3e-08   35.3   0.1    1.2  1  PHP       PHP domain


Domain annotation for each model (and alignments):
>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   7.3e-13   1.3e-08       1      74 [.      19     128 ..      19     257 .. 0.68

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 7.3e-13
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE.................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayvaddse.......................... 73 
                 dlH+H++ s  dg+++++el+kk++  g++  a+TDh+ + g  e+ + a   +  g+++i G+e++ +                              
  EGE27639.1  19 DLHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTA---KMVGVELIRGVEVSCTHTLSggygkhqeidkiihvvalnfsdtlkm 112
                 89***9998..455666*************************88888888...6678********8877766677777666666666666666666665 PP

                 ................ CS
                 ...............x RF
         PHP  74 ...............k 74 
                                +
  EGE27639.1 113 nealqslqdsrhlrgR 128
                 5555555555555552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 2753.25
//
Query:       EGE27640.1  [L=298]
Description: RecX family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-18   66.1   0.1    1.5e-17   64.2   0.0    2.0  1  RecX      RecX family
  ------ inclusion threshold ------
      0.094   12.2   0.0       0.17   11.3   0.0    1.5  1  DUF4780   Domain of unknown function (DUF4780)


Domain annotation for each model (and alignments):
>> RecX  RecX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   1.7e-21   1.5e-17       1     117 [.     152     289 ..     152     294 .. 0.87

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 1.7e-21
                 SGGGT--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH----HHHHHHHHHTTT--HHHHHHHHTTS-HHHH.......................HH CS
        RecX   1 LakkgfpeevieavierlkeeglldDerfAesfvrsrlrsrgyGprrikqeLkqkGiseelieqaleeldeeeq.......................ar 76 
                 L +kg +++++e+ +++++ +g+++DerfA ++vr+ +r +g+G++ i q Lk  +++   + + +++l +++                        a 
  EGE27640.1 152 LLAKGCEPQAVEDLLQEFAHKGYQSDERFAMMLVRESIR-KGRGKNHILQVLKSAKVNLPESVDSIDQLIQQAGadsltdgtiltcdesetvnwlklAV 249
                 568999********************************8.*****************865555555522222222445779999999************ PP

                 HHHHHHHHHTTTS-HHHHHHHHHHHHHHTT--HHHHHHHHH CS
        RecX  77 elaekklkklkkeedekekqklvrfLarrGFssevirevlk 117
                 e+ ++k++ +  ++++k+k+k+ rfL++rGF++ v+ e+lk
  EGE27640.1 250 EVRTRKYGDT-IPTTPKDKAKQLRFLQYRGFEFWVCLEALK 289
                 *********9.5999******************99999987 PP

>> DUF4780  Domain of unknown function (DUF4780)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.9e-05      0.17       4      78 ..     177     250 ..     174     274 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.9e-05
     DUF4780   4 pedlkvaivpesypeerlsseqleeikaallkeieelkfsesappsfsdcilkkGallvvCsdsksrdWLervvs 78 
                 +e+  + +v+es  ++   ++++++++++ +  + e+ +s+ + ++  +    ++  +++C+ s++++WL+ +v+
  EGE27640.1 177 DERFAMMLVRESIRKG-RGKNHILQVLKSAKVNLPESVDSIDQLIQQAGADSLTDGTILTCDESETVNWLKLAVE 250
                 5666677777777777.566677777777777788888888888888888888888999************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 2536.84
//
Query:       EGE27641.1  [L=349]
Description: recombinase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-148  493.8   2.6   1.5e-148  493.4   2.6    1.1  1  RecA      recA bacterial DNA recombination protein
    2.7e-12   46.5   1.3    1.1e-11   44.5   1.2    1.7  1  Rad51     Rad51
    2.3e-08   33.7   1.7    6.8e-07   28.9   1.8    2.9  2  ATPase    KaiC
    0.00019   21.4   0.0     0.0005   20.1   0.0    1.7  1  ATPase_2  ATPase domain predominantly from Archaea
    0.00083   19.0   0.3      0.024   14.2   0.3    2.4  1  AAA_25    AAA domain
     0.0015   18.3   0.0     0.0027   17.5   0.0    1.5  1  AAA_24    AAA domain
  ------ inclusion threshold ------
       0.02   13.8   0.0      0.032   13.1   0.0    1.2  1  AAA_35    AAA-like domain
      0.024   14.5   0.0       0.11   12.4   0.0    2.0  2  MobB      Molybdopterin guanine dinucleotide synthesis protei
      0.029   14.9   0.1      0.076   13.5   0.0    1.8  2  ABC_tran  ABC transporter
      0.082   12.9   0.0       0.36   10.9   0.0    2.0  2  AAA_14    AAA domain


Domain annotation for each model (and alignments):
>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.4   2.6  8.3e-152  1.5e-148       1     263 []       7     269 ..       7     269 .. 1.00

  Alignments for each domain:
  == domain 1  score: 493.4 bits;  conditional E-value: 8.3e-152
                 HHHHHHHHHHHHHH-TTSS--TTS--.-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEESS----HHHHH CS
        RecA   1 kaleaalkqiekkfGkgsimklgdekeklkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaqkkggvaafidaehaldpkyak 99 
                 kal+aal+qiek+fGk++im+lgde++kl+v+++s+Gsl+ldialGiGGlpkGriiei+GpessGkttl+l++iae+qk+gg++afidaehaldp yak
  EGE27641.1   7 KALKAALAQIEKQFGKNTIMHLGDETAKLDVDVVSTGSLGLDIALGIGGLPKGRIIEIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALDPIYAK 105
                 79************************************************************************************************* PP

                 HTT--GGG-EEE--SSHHHHHHHHHHHHTTT--SEEEEE-TTT---STT-----------HHHHHHHHHHHHHHHHHTTT--EEEEEEE---------- CS
        RecA 100 klGvdidellvsqpdtGeqaleiadalvrsgaidlivvdsvaalvpkaeieGemgdskvglqarlmsqalrkltgaisksntvvifinqirekiGvmfg 198
                 klGv+id+llvsqpd+Geqaleiad+lvrsgaidlivvdsvaal+pkaeieGemgds++glqarlmsqalrk+tg+ ++sn++vifinqir+kiGvmfg
  EGE27641.1 106 KLGVNIDDLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGDSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFG 204
                 *************************************************************************************************** PP

                 -------HHHHHHH-SEEEEEEEES---------EEEEEEEEEEESSS----EEEEEEETTTEE- CS
        RecA 199 npetttGGralkfyasvrldvrrieeikekeevignktkvkvvknkvappfkeaeldilygeGis 263
                 +petttGG+alkfyasvrld+rri+++k+++e+ig++t+vkv+knk+appf+++e++i+ygeGi+
  EGE27641.1 205 SPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGSETRVKVIKNKMAPPFRQTEFQIMYGEGIN 269
                 ***************************************************************96 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   1.2     6e-15   1.1e-11      15     234 ..      36     249 ..      16     270 .. 0.75

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 6e-15
                 SS-EE--S-HHHHHHHT.SSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HHHHGGGEEEEE-- CS
       Rad51  15 ellqlttGskklDelLg.GGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldkeevlenvayaRay 112
                 ++  ++tGs  lD  Lg GG++ g i eifG   sGkt l+ +    +q         g +++id+e ++ p      a++ +++ +++l         
  EGE27641.1  36 DVDVVSTGSLGLDIALGiGGLPKGRIIEIFGPESSGKTTLTLQTIAECQKQ------GGTCAFIDAEHALDPI----YAKKLGVNIDDLLVSQ------ 118
                 455699*******99955********************9999988888843......468***********96....5889999999988654...... PP

                 STTHHHHHHHHTHHHHHHS-EEEEEEETTTGGG.CH-----...--THHHHHHHHHHHHHHHHHHHHH--EEEEEEE-------.------------HH CS
       Rad51 113 tiehqeellqqaaallaedkfallivDsvtaly.Rtdfsgr...gelakRqqklgkllrtLrkladefevavvitnqvvaqvdgqaalfsadpkkPigG 207
                   ++ e+ l+ a +l+ +  + l++vDsv+al  +++ +g      +    + +++ lr+++  a++ +  v+  nq+  +++    +f + p+   gG
  EGE27641.1 119 -PDNGEQALEIADMLVRSGAIDLIVVDSVAALTpKAEIEGEmgdSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGV---MF-GSPETTTGG 212
                 .467777888888889999************8636776543111344445555667777777779999***********99988...55.6788899** PP

                 HHHHHH-SEEEEEEE-ST..........TEEEEEEES CS
       Rad51 208 lvlahasttRlalrkgkg..........eeRivkvvd 234
                 + l   +++Rl +r+             e+R+  + +
  EGE27641.1 213 NALKFYASVRLDIRRIGSvkdgdeiigsETRVKVIKN 249
                 ************9975333445677776555443333 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   1.8   3.8e-10   6.8e-07       1      78 [.      40     115 ..      40     269 .. 0.87
   2 ?   -2.0   0.0       1.1   1.9e+03      69     120 ..     276     328 ..     272     334 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.8e-10
      ATPase   1 vktgIeglDeil.kgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenakslGwdlekle 78 
                 v+tg  glD  l  gG+p+gr++ i G   +GKt++ lq + +  +k g  + f+  e     ++  ak+lG+++++l 
  EGE27641.1  40 VSTGSLGLDIALgIGGLPKGRIIEIFGPESSGKTTLTLQTIAEC-QKQGGTCAFIDAEHALDPIY--AKKLGVNIDDLL 115
                 689999*****989*************************77766.666********999888875..789999998875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
      ATPase  69 slGwdlekleeegklaiidasesaeesaee.kdkedleelieelaeaikeika 120
                  lG+d+ ++ ++g ++     + ++++a+  k+ ++  ++++e++  ++eik 
  EGE27641.1 276 DLGVDIGAVGKSGAWYSYGDGKIGQGKANTvKYLQENPAIASEIEAKVREIKL 328
                 58999999999999888877777777666667777778888888888888875 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.8e-07    0.0005      21     126 ..      60     194 ..      55     207 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.8e-07
    ATPase_2  21 eiyfiYGpegsGKtaLlkeiienledkdkyviyyialre...esiskldefie........eeeekkklekal..............giavpkaeleei 94 
                 +i+ i+Gpe+sGKt+L  + i + ++++    +++a +    ++ +kl   i+        + e++ +++++l              +  +pkae+e  
  EGE27641.1  60 RIIEIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHAldpIYAKKLGVNIDdllvsqpdNGEQALEIADMLvrsgaidlivvdsvAALTPKAEIEGE 158
                 6889********************999999999987555100444444444447766655544444444444477788888888877777777777666 PP

    ATPase_2  95 lk.eksklvfkaielllekikkkgkk...iiiiiDe 126
                 +  ++  l  + ++++l+ki+ ++k+   ++i+i  
  EGE27641.1 159 MGdSHMGLQARLMSQALRKITGNAKRsncMVIFINQ 194
                 665666666677777777777777777767776655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   1.3e-05     0.024      28      84 ..      55     100 ..      51     196 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
      AAA_25  28 gllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsed 84 
                 g lp+g ++ ++G++ +GKttl+l+  +++ +          + g++ +++aE + d
  EGE27641.1  55 G-LPKGRIIEIFGPESSGKTTLTLQTIAECQK----------QGGTCAFIDAEHALD 100
                 4.59*********************9988873..........456677777776664 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06    0.0027       5      78 ..      62     150 ..      58     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
      AAA_24   5 iliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdie..........swedfldevvelaaeladyktlviDtidele 78 
                 i i+Gp+ +GKTtl ++        g + +fid e+ l+ ++a+k+   +          + e+ l+ ++ l +  a ++ +v+D++  l 
  EGE27641.1  62 IEIFGPESSGKTTLTLQTiaecqkqGGTCAFIDAEHALDPIYAKKLGV-NiddllvsqpdNGEQALEIADMLVRSGA-IDLIVVDSVAALT 150
                 679**************************************9999763.2357778555555555555555566666.9999999988775 PP

>> AAA_35  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.032      30      71 ..      58      99 ..      56     108 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
      AAA_35 30 pGalirikapkkmGKtSLlarilakakqqgyktvsldlqlad 71
                +G +i i +p+  GKt L  +++a++++qg   + +d ++a 
  EGE27641.1 58 KGRIIEIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHAL 99
                699****************************99999988775 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-05      0.11       1      37 [.      61      97 ..      61     108 .. 0.88
   2 ?   -0.9   0.0      0.78   1.4e+03      73      97 ..     120     144 ..     104     156 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-05
        MobB  1 vlgivgksgsGKTtLleklipelkarglrvgtiKhah 37
                ++ i g + sGKTtL  + i+e +++g + + i  +h
  EGE27641.1 61 IIEIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEH 97
                68999**********************9999986554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.78
        MobB  73 eleeaelsleellarlsevDlvlvE 97 
                 +  e+ l+++++l r  ++Dl++v 
  EGE27641.1 120 DNGEQALEIADMLVRSGAIDLIVVD 144
                 446778899999999999***9996 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.3e-05     0.076       8      47 ..      56      95 ..      54     190 .. 0.78
   2 ?   -3.1   0.0       5.8     1e+04      18      35 ..     296     313 ..     296     339 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.3e-05
                EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTC CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  8 lkegekvaivGenGaGKStLlkllagllkpteGeilldgk 47
                l +g+++ i+G+  +GK+tL    + + +++ G+  + ++
  EGE27641.1 56 LPKGRIIEIFGPESSGKTTLTLQTIAECQKQGGTCAFIDA 95
                789*****************99999999999999865433 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.8
                 ESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  18 GenGaGKStLlkllagll 35 
                 G+ G GK   +k l ++ 
  EGE27641.1 296 GKIGQGKANTVKYLQENP 313
                 556777777777766554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.28   5.1e+02      91     119 ..      35      63 ..      18      64 .. 0.75
   2 ?   10.9   0.0    0.0002      0.36       2      43 ..      59     100 ..      58     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.28
      AAA_14  91 knldvivtGSnskllskeiatslagrvae 119
                  ++dv+ tGS+ +++   i   + gr+ e
  EGE27641.1  35 LDVDVVSTGSLGLDIALGIGGLPKGRIIE 63 
                 4689******9999988888888888766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0002
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderd 43 
                 ++i+ i G+  +GKTtl  q i e   +   + +i+ ++  d
  EGE27641.1  59 GRIIEIFGPESSGKTTLTLQTIAECQKQGGTCAFIDAEHALD 100
                 57899****************998876667777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 2886.84
//
Query:       EGE27642.1  [L=76]
Description: hypothetical protein EA1_01568 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 672.55
//
Query:       EGE27643.1  [L=65]
Description: hypothetical protein EA1_01573 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 573.88
//
Query:       EGE27644.1  [L=472]
Description: D-lactate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-65  220.1   0.0    8.9e-65  218.8   0.0    1.7  2  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    2.4e-37  127.8   0.2    4.1e-37  127.0   0.2    1.3  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.68   6.1e+03     125     160 ..     159     194 ..     148     202 .. 0.74
   2 !  218.8   0.0   9.9e-69   8.9e-65       2     250 .]     217     456 ..     216     456 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.68
                    CTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEE CS
  FAD-oxidase_C 125 kagvavlseDtsvPvsrladlvrdikalldkyglev 160
                      + +vls ++++P  ++ +   ++k+  + y+l+ 
     EGE27644.1 159 TMKEVVLSLEVVLPTGEIIKTGTRAKKSSAGYDLTR 194
                    567788888899998888888888888887777554 PP

  == domain 2  score: 218.8 bits;  conditional E-value: 9.9e-69
                    -SEEEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE.. CS
  FAD-oxidase_C   2 pearavalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvl 97 
                    pe++ ++ + fps++ a++a+ +++q+ +++a++el+d ++++++++++g       +e+a+l+vef+g++ + + e+++ l+e+i e++g++d+ 
     EGE27644.1 217 PEVIGSGTCHFPSIDTACQATIATIQMCLPIARIELLDPIQIRACNQYSGL----SLPEKATLFVEFHGTK-QSVAEQAT-LFEQIIEDFGGSDFE 306
                    8999999********************9***********************....9***************.99999999.*************** PP

                    ........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--THHHH CS
  FAD-oxidase_C  98 vaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeeraeklvd 193
                    + +dea +++lw aR+ a+     ++l++    ls+D +vP+srla++v +++a ++k+g+ + ++gH+gdgn+h+++l+d ++++e+++ae++ +
     EGE27644.1 307 WGSDEAVRKKLWSARHHAYY--AACALRPTARGLSTDACVPISRLAECVTQTQADIQKSGMLAPIVGHVGDGNFHVLLLVDTNNDEERQKAEEILE 400
                    *******************9..8889********************************************************************** PP

                    HHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 194 evvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                    +++ +a+e+gG+++gEHG+G+ k++y+++e g  ++ +m++iK+a+DP+gi+NPgk+
     EGE27644.1 401 RLAVRAIEMGGTCTGEHGIGQGKRKYMQKEHGA-AIGVMQAIKQAIDPRGIMNPGKI 456
                    *******************************88.*********************96 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   0.2   4.6e-41   4.1e-37       2     139 .]      44     180 ..      43     180 .. 0.97

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 4.6e-41
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                    +av+++++  +va+a +++ e+++pv+++G Gssl gq     gg+ +d+s+++ i+ i+ee+ tatv+aG t + l+ +l+a+gl+++l+pg+  
     EGE27644.1  44 DAVLTAKHKYDVADAAKICYEHHMPVIAFGIGSSLEGQLNaPYGGLCIDMSQMDEIVAINEEDLTATVQAGMTREVLNDYLRATGLFFPLDPGA-- 137
                    89**********************************99888****************************************************9.. PP

                    GSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrls 139
                     +t+GG++at+a+G+++ +yG+++++vl+levvl++Ge+++++
     EGE27644.1 138 NATIGGMVATRASGTNAVRYGTMKEVVLSLEVVLPTGEIIKTG 180
                    699************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3422.60
//
Query:       EGE27645.1  [L=180]
Description: hypothetical protein EA1_01583 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   31.2   1.0    1.9e-07   30.3   1.0    1.5  1  N_methyl  Prokaryotic N-terminal methylation motif
    0.00056   20.3   0.0    0.00075   19.9   0.0    1.1  1  GspH      Type II transport protein GspH
  ------ inclusion threshold ------
      0.044   13.9   0.0      0.081   13.1   0.0    1.4  1  DUF2325   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   1.0   3.2e-11   1.9e-07       2      26 ..       6      30 ..       5      31 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 3.2e-11
    N_methyl  2 rkqrGFTLiElLvalaIlaillaaa 26
                + q+GFTLiE Lv+l+Il i+ ++a
  EGE27645.1  6 NTQQGFTLIETLVVLSILVIIGMIA 30
                579******************9998 PP

>> GspH  Type II transport protein GspH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.3e-07   0.00075       6     107 ..      51     164 ..      48     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHHHHHHHSS-EEEECTT....E...EEESCEES.SSCCCCEETTTCSSEEEEEESSSSTTESSECTT--SCEEE-TTS..SCB--EEEEEE. CS
        GspH   6 aaalqlArseAvrrgrpvtlcpss....g...wqggWrvf.vdanangtldggedvlrrgaaldggdtltgaakgtpqitFnpsG..geltpgtltlc. 93 
                 + al+ A+ e  + +++v +cp +    +    q+g  vf +++ +n+ +d+++ vl+ +  l+ g    + a  + +i F+ +     + +g++++c 
  EGE27645.1  51 QEALRRAKIESALHQKDVIICPINtlgvCdrfGQSGLMVFiDKNKNNRKDDSDALVLKESFELKYGMLSMTVALHRHYIKFMGDNakPRGYMGNVRYCs 149
                 578999***************9996754133334999999444555555555567****************************887988899******8 PP

                 TTCTCCEE.EEEEST CS
        GspH  94 tsasagrs.rvvvsa 107
                  +++a+ s + +++ 
  EGE27645.1 150 LNGDAALShQTTINM 164
                 888888888888876 PP

>> DUF2325  Uncharacterized protein conserved in bacteria (DUF2325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.3e-05     0.081       1      57 [.      21      76 ..      21      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
     DUF2325  1 svlivGGddrmeeqyrklleklggklkvfdgrkekkkkkleskigkaDlvvlftdtv 57
                s+l++ G+    + y  l+++++ ++     ++  +++k+es + + D+++++++t+
  EGE27645.1 21 SILVIIGMI-AIPAYDSLMRRYESQMVGRYVQEALRRAKIESALHQKDVIICPINTL 76
                689999998.89************88777777777788****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1407.05
//
Query:       EGE27646.1  [L=349]
Description: 5'-nucleotidase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.5e-103  343.8   0.0   5.4e-103  343.5   0.0    1.1  1  5-nucleotidase  5'-nucleotidase
  ------ inclusion threshold ------
      0.036   13.4   1.2       0.17   11.2   0.0    2.5  3  CMS1            U3-containing 90S pre-ribosomal complex subun


Domain annotation for each model (and alignments):
>> 5-nucleotidase  5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.5   0.0  6.1e-107  5.4e-103       2     264 ..      46     317 ..      45     319 .. 0.95

  Alignments for each domain:
  == domain 1  score: 343.5 bits;  conditional E-value: 6.1e-107
  5-nucleotidase   2 yqeehedeilkpGvafplvkkllalneklae....kekelvevvllsrnspetglrvfnsiehygLdieraaftsGespaeYlkafkvdLFLsan 92 
                     yq+ +e+eil++G+++pl+++ll+ln+++       e++ vevv++s++sp++g++v+nsi++ygL i+r+af+sG+ +a+Y+k+f+vdLFL++n
      EGE27646.1  46 YQQVRENEILDKGSGYPLIEALLNLNKHQPPmeyhIESPYVEVVIVSKSSPDIGIQVLNSIRAYGLGITRSAFISGDLVADYIKDFNVDLFLTTN 140
                     9*************************875447774499********************************************************* PP

  5-nucleotidase  93 eedvreaieagvaaalvl..eskkekeeeeeelriaFDgDavlfsdeservfkeegleafqehEkekakkpleeGPlkklleklsklqkkfeeke 185
                     ++d +++++a+++a++vl  ++ + ++ ++++lriaFDgDavlf+d+ e vfk+egl af+++E+e+a+ p+e+GP++++l klsklq+k ++++
      EGE27646.1 141 HKDAQQVVDAKICACAVLdaTPISIDKLDSHQLRIAFDGDAVLFDDSGELVFKQEGLYAFHARETEMADLPIEKGPYADFLIKLSKLQAKLPNQS 235
                     ******************5334458999****************************************************************855 PP

  5-nucleotidase 186 e...eapirtalvTaRsapaheRviktLrawgvevdeafflgGleKkevLkalkphiFFDDqeshlesaaevvpsahvpygv 264
                     +   ++pir+alvTaR+apa++R+iktLr+wgv+vd afflgGl+K++vLk+++phiFFDD+ +h+++a++vvpsa vpy++
      EGE27646.1 236 TdapHNPIRIALVTARNAPADMRAIKTLRQWGVTVDMAFFLGGLDKTNVLKTFAPHIFFDDSIKHIDAARSVVPSALVPYHS 317
                     557899**************************************************************************86 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.12     1e+03     128     152 ..       7      34 ..       5      52 .. 0.70
   2 ?   -1.5   0.0      0.14   1.3e+03      51      72 ..     117     134 ..     103     167 .. 0.57
   3 ?   11.2   0.0   1.8e-05      0.17      90     177 ..     204     305 ..     186     311 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.12
        CMS1 128 elLvltlaalRaaDlaralkklq...tk 152
                 ++L+++++a    Dla+   kl     k
  EGE27646.1   7 NTLIVAISATALFDLAKNEAKLAelvAK 34 
                 5899999999999999977666533333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.14
        CMS1  51 alqdpelLadylaqklkriekD 72 
                 a  +++l+ady+ +       D
  EGE27646.1 117 AFISGDLVADYIKDFN----VD 134
                 5567777777776532....22 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 1.8e-05
        CMS1  90 DttsftkPrtldnlpdyleelsefakklv.ksaksngsPelLvltlaalRaaDlaralkklq..............tkdskvakLFakhikleesvtyl 173
                 +t +   P  +  + d+l +ls++++kl  +s+ ++ +P  + l +a    aD+ ra+k l+                +++v k Fa hi  ++s++ +
  EGE27646.1 204 ETEMADLPIEKGPYADFLIKLSKLQAKLPnQSTDAPHNPIRIALVTARNAPADM-RAIKTLRqwgvtvdmafflggLDKTNVLKTFAPHIFFDDSIKHI 301
                 6777778888999***************62566778888777777666555664.55555554556667778887755678999999999999999998 PP

        CMS1 174 kksr 177
                  ++r
  EGE27646.1 302 DAAR 305
                 8877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2657.44
//
Query:       EGE27647.1  [L=279]
Description: tatD-related deoxyribonuclease [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-50  169.6   0.0    9.3e-50  169.4   0.0    1.0  1  TatD_DNase  TatD related DNase


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   0.0   5.2e-54   9.3e-50       1     253 [.       5     271 ..       5     273 .. 0.88

  Alignments for each domain:
  == domain 1  score: 169.4 bits;  conditional E-value: 5.2e-54
                 EEEEE-TTSCCCTTTHHHHHHHHHHTTEEEEEEE-SSGGGHH...HHHHHHTT....TTTEEEEE---GGGGGCC.CCHHHHHHHHHHCCCTSEEEEEE CS
  TatD_DNase   1 iDaHcHldskefeedreeileraeeagvaavvvvgtsskdsk...avlelakk...ypnkvyavlGiHPnevdeasedlleelkelanvkhskvvaiGe 93 
                 iD+H+H+d +e++++r +  ++a+++gv +++ +g   k ++    v + ++    +p   + ++G+HP +++e+++d+l  l+++  +++++++a Ge
  EGE27647.1   5 IDTHTHFDIPEYDDKRVQFAQNADKNGVRHLLLIGYLAKYFErmvLVNQAINAlkhAPR-SHLAFGLHPLYINEQHDDDLGILEDY--LNNYPTIAMGE 100
                 8***********999***99***************999544433344444443442676.9*************************..*********** PP

                 EEEET-CCCCCGH...HHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCGGCCS..EEEETT--S-HHHHHHHHHTTEEEEE-GGGGTTTTHH CS
  TatD_DNase  94 iGLDyysreestk...eaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaaeaka..kvvlHsfsgsaeeakkflklgyyislsglltfknake 187
                 iGLD y +  +++   ++q+++F eq++lAk ++lp+ +H rk ++d+l+il e +   +  +++ Hsfsg ++ea +f+k g+ ++++g +t  nak+
  EGE27647.1 101 IGLDTYAKPLKQPdifQKQKRFFVEQIQLAKAYDLPILLHIRKNHADVLKILAEQNYHAHdrGGIAHSFSGGEQEALAFVKHGFKLGITGQITNPNAKK 199
                 *****85554444556**************************************99888899************************************* PP

                 HHHHH....HHS-GGGEEE---TTSSEECCCTT..SE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHH CS
  TatD_DNase 188 lrelv....kavpldrlLiETDaPyltpkpyrg..krnepanvayvveklaelkaltleelaeitaeNakrl 253
                 lr++v     +   + ++iETD+P++ p p  +  + nepa ++ v+++l+el + + + la+++++N++ +
  EGE27647.1 200 LRRSVkavfDKYGIEAFVIETDCPDMMPLPCSHlgQFNEPAHLHCVLDELSELFNYDKQLLANQLWKNSCDA 271
                 9999933334456789************7766545*********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2283.18
//
Query:       EGE27648.1  [L=261]
Description: ThiF family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-31  108.3   0.7    4.7e-31  108.0   0.7    1.1  1  ThiF             ThiF family
     0.0091   16.3   0.6        1.6    9.0   0.2    2.3  2  TrkA_N           TrkA-N domain
  ------ inclusion threshold ------
       0.14   12.4   3.7        1.4    9.2   3.6    2.2  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.7   7.9e-35   4.7e-31       8     209 ..      20     259 ..       9     261 .] 0.82

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 7.9e-35
                 HHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGCC..... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
        ThiF   8 lgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritdet..... 101
                  g+++ +k +++ v ++G+Gg+Gs++++ La++ +g++ lvD+D+   sN nRq  + ++  G++K ev+ae+l+ inp v++  + e +t+++     
  EGE27648.1  20 YGQQNHDKFAKAIVYVIGVGGVGSWVAEGLARTAIGQIVLVDMDVLVESNINRQLPALSQTLGENKIEVMAERLRGINPRVQLDCIDEFLTTDNiktil 118
                 45589999**********************************************************************************997734433 PP

                 ..S-HHHHTT-...........SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEE............................ECCS-E CS
                 ..xxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxx RF
        ThiF 102 ..vleellesv...........DlVvdalDniearrlvnracvkkgiplieagtlgfegqvvvii............................pgktgc 159
                           +            +V+d++D ++a+++++  c++++i+++ ag +g++ + + i                             ++++  
  EGE27648.1 119 pnR-------ArvaalkaegraVIVLDCVDDMSAKLAIALHCRFNKIKCVIAGGAGAKIDPTRIGvadlrdttqdpllarlrsklrekgigisHKEKFG 210
                 330.......13333344444489****************************************54678888888888888888887777776577777 PP

                 CTSS-TGGS.EECCCCEEHHHHHHCT...E-B-HHHHHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 160 yeCldpsstedptekkvplctsiagn...ipaiatttavvaglaalellklls 209
                 ++C +   ++ p++ + +lc ++  n     +   +ta v++l++ e+lk++s
  EGE27648.1 211 LRCVY---SDEPPKLTNNLC-QTHLNcggFGSAVVITATVGMLMVGEALKIIS 259
                 78875...588888888999.443334556677788***************97 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.2   0.00027       1.6       2      30 ..      34      63 ..      33      79 .. 0.81
   2 !    5.5   0.0    0.0033        20      19      55 ..     110     145 ..      89     163 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00027
                EEES-SHHHHHHHHHHHHTT.EEEEEEESS CS
      TrkA_N  2 iiiGlGrvGrslaeeLsegg.kdvvvidkd 30
                 +iG+G vG+ +ae L +    ++v++d d
  EGE27648.1 34 YVIGVGGVGSWVAEGLARTAiGQIVLVDMD 63
                69****************54457*****98 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0033
                 HTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHH CS
      TrkA_N  19 eggkdvvvidkdeerveelreeglevvvgdatdeevL 55 
                 +   ++  i  +++rv+ l++eg  v+v d+ d+   
  EGE27648.1 110 TTD-NIKTILPNRARVAALKAEGRAVIVLDCVDDMSA 145
                 433.4899999*******************9998665 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.6   0.00023       1.4       1      41 [.      33      71 ..      33     164 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00023
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskekleala 41
                     v +iG G+vG+ vae lar+     +i+++d +     ++ 
       EGE27648.1 33 VYVIGVGGVGSWVAEGLARTAIG--QIVLVDMDVLVESNIN 71
                     679****************9744..9999998765555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2174.37
//
Query:       EGE27649.1  [L=273]
Description: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-25   88.8   0.5    3.2e-25   88.1   0.5    1.3  1  THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-ter
    3.3e-13   49.2   1.6    3.3e-13   49.2   1.6    2.6  2  Hexapep_2  Hexapeptide repeat of succinyl-transferase
    6.6e-12   44.7   8.8    4.7e-07   29.3   0.9    3.0  2  Hexapep    Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.5   5.3e-29   3.2e-25       2      67 .]       4      69 ..       3      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 5.3e-29
                HHHHHHHHHHTGGG--SSS--HHHHHHHHHHHHHHHTTSS-SEEEETTEEEE-HHHHHHHHHHHHH CS
   THDPS_N_2  2 LesdIeaawerrdelepetagaearaaveevleaLdaGelRvAekkdgeWevneWvKkAiLLsFrl 67
                L ++Ie+a+++r++ +++t++ e+raav+ev+eaLd+G lRvA+k dgeW+v++WvKkA+LLsF++
  EGE27649.1  4 LATIIETAFDDRANFTAQTVSPEIRAAVDEVIEALDNGSLRVAQKIDGEWVVHQWVKKAVLLSFKI 69
                889*************************************************************97 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.7     0.014        85      18      31 ..     150     163 ..     144     165 .. 0.79
   2 !   49.2   1.6   5.5e-17   3.3e-13       1      33 [.     175     209 ..     175     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.014
                 EEE-TT-EE-TT-E CS
   Hexapep_2  18 vslGdncvvgaGvv 31 
                  ++G+n++++ Gv 
  EGE27649.1 150 AQIGKNVHLSGGVG 163
                 589******99995 PP

  == domain 2  score: 49.2 bits;  conditional E-value: 5.5e-17
                 .EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2   1 pviIGdnCliGanagi..GvslGdncvvgaGvvit 33 
                 p+iI+dnC+iGa+++i  Gv++++++v+++Gv+i 
  EGE27649.1 175 PTIIEDNCFIGARSEIveGVIVEEGSVISMGVYIG 209
                 89*************889***************96 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.6   2.3e-07    0.0014       3      36 .]     133     166 ..     114     166 .. 0.90
   2 !   29.3   0.9   7.9e-11   4.7e-07       2      35 ..     176     209 ..     175     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.3e-07
                 EEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   3 vIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                  + ++++++ +a++g+ ++IG+nv++  gv+igg
  EGE27649.1 133 YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGG 166
                 5568899999**********************97 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 7.9e-11
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 t+I++n++Ig+ + i ++V++ ++++I  gv+ig
  EGE27649.1 176 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVYIG 209
                 89*******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2273.42
//
Query:       EGE27650.1  [L=358]
Description: lysophospholipase-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-49  165.8   0.1    1.3e-48  165.4   0.1    1.1  1  Hydrolase_4    Serine aminopeptidase, S33
    9.2e-13   48.4   0.3    5.9e-12   45.8   0.3    2.0  1  Abhydrolase_1  alpha/beta hydrolase fold
      1e-09   39.4   0.0    1.3e-09   39.0   0.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    2.8e-08   33.5   0.1    0.00094   18.7   0.0    2.5  2  Peptidase_S9   Prolyl oligopeptidase family
    0.00012   21.7   0.0    0.00023   20.8   0.0    1.5  1  LIDHydrolase   Lipid-droplet associated hydrolase
    0.00072   19.2   0.0     0.0023   17.5   0.0    1.8  1  DLH            Dienelactone hydrolase family
  ------ inclusion threshold ------
      0.039   13.2   0.0      0.065   12.5   0.0    1.3  1  Acyl_transf_2  Acyl transferase
      0.059   13.1   0.0       0.32   10.8   0.0    2.2  2  Abhydrolase_5  Alpha/beta hydrolase family
       0.08   12.8   0.0       0.67    9.8   0.0    2.2  2  Ser_hydrolase  Serine hydrolase
       0.12   12.2   0.0        3.5    7.4   0.0    2.3  1  Abhydrolase_3  alpha/beta hydrolase fold
       0.15   11.7   0.0        0.3   10.7   0.0    1.5  1  Catalase_C     C-terminal domain found in long catalases
       0.16   11.6   0.0       0.23   11.1   0.0    1.3  1  Esterase       Putative esterase


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.1   8.7e-52   1.3e-48       2     239 .]      70     340 ..      69     340 .. 0.87

  Alignments for each domain:
  == domain 1  score: 165.4 bits;  conditional E-value: 8.7e-52
  Hydrolase_4   2 epkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse......gkrghvpsfddyvdDlaafvekvkeehpel.....plfllGhSmGGl 88 
                  e ka++++vHG+ eh grya++a+ La++G+ v+++D+ GhG++       g   + ++++++++D+  + +k+k++ ++l     p++++GhSmG++
   EGE27650.1  70 EIKATLLIVHGMSEHGGRYADFARFLADNGVLVATYDQLGHGQTVkdkyelGFFDEKHPVQTLCKDVIIMADKLKDKARTLtsrpvPHYIMGHSMGSF 167
                  689******************************************9999999999999****************988877788999************ PP

  Hydrolase_4  89 iallyllrypdkvaglilsaPalkikakl.........kappllklllkllgkllpklqv......snnlkadslsrdpevvaayeadplvhgkitvr 171
                  i+ ++l++++ +++g+il+++a +                + ++k +++ +++l+ ++ +       + + +++ls++ + v+a+e+dpl+++++t++
   EGE27650.1 168 IVRTVLTHHSTRFDGVILMGTADSFGLLNrmslvsfglLNQLFAKQVNQKAAHLMNHVLLsqlrspISASPFAWLSENIDAVRAFETDPLTGFAFTNN 265
                  **********************888876655666555313334444444445554444448888887889**************************** PP

  Hydrolase_4 172 lllelldamkrleeraakit....lPllllhGeaDkvvdpeas.relyerlgsk..dktlklypglyHellnEpd 239
                   +++l+ +m+r+ + ++  +    +P+ll++G +D+v ++++  + l e+l ++   ++++lyp+++He l+E++
   EGE27650.1 266 GWMTLFALMQRAMRPDWYTNmpsnYPILLISGNNDPVGNMGQDiQTLQEKLIHAncSVSVQLYPNMRHEPLHEKQ 340
                  *****************999788888**************99976666666665458899*************86 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.3   3.9e-15   5.9e-12       2     201 ..      74     317 ..      73     340 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 3.9e-15
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.............CHHSHHHHHHHHH.HHHHHCTTSSEE.EEEETHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin............ddygtasvaddld.rildalgddklt.lvGhSmG 83 
                    +l+i+hG+ + ++ +a   +a+ La++g  v ++D++G+g++ + + +              +d  +  +ad l+ +++  +    ++ ++GhSmG
     EGE27650.1  74 TLLIVHGMSEHGGRYAD--FARFLADNGVLVATYDQLGHGQTVKDKYELGffdekhpvqtlcKDVII--MADKLKdKARTLTSRPVPHyIMGHSMG 165
                    69***************..*************************99988788888887777777777..88888889999999999999******* PP

                    HHHHHHHHHHHGGGEEEEEEESE.........CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH....... CS
  Abhydrolase_1  84 GmialayaaeyperVkalvllga.........idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf....... 163
                    ++i+++++  +  r ++++l+g+         ++  +     q+++ +  ++++  +  +   +   p++a++ a+l  + ++v a++        
     EGE27650.1 166 SFIVRTVLTHHSTRFDGVILMGTadsfgllnrMSLVSFGLLNQLFAKQVNQKAAHLMNHVLLSQLRSPISASPFAWLSENIDAVRAFETdpltgfa 261
                    ***********************6666665555555555555555555555555555556666666777777777777777777777667777777 PP

                    ..................HCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHH CS
  Abhydrolase_1 164 ..................pdkskrfpssgsdnasslatgalksieqwpttdsakll 201
                                      pd++ ++ps+++   +s+    ++++ q  +t+  kl+
     EGE27650.1 262 ftnngwmtlfalmqramrPDWYTNMPSNYPILLISGNNDPVGNMGQDIQTLQEKLI 317
                    77777777777777777777777777777777777766666666666666666655 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   8.8e-13   1.3e-09       1     211 [.      75     338 ..      75     347 .. 0.56

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 8.8e-13
                    EEEE--GC.....GCHHHHHHHHCCT...CEEEEE--TTSTS-GGCS--HHH......C....HHHHHHHCCTT.......TTSE..EEEEETCHH CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaag...vhvlapDlpGhGrsdpppldled......l....adlaalldelaa.....gggpv..vlvGHSlGG 76 
                    +l +HG + +++ ++   +a++la+    v   ++D  GhG +  + ++l        +     d+  ++d+l++       +pv  +++GHS+G 
     EGE27650.1  75 LLIVHGMSEHGGRYA--DFARFLADNgvlV--ATYDQLGHGQTVKDKYELGFfdekhpVqtlcKDVIIMADKLKDkartlTSRPVphYIMGHSMGS 166
                    6899**666677776..7777778887554..78*******4433333333322222222223555555555555666685555567********* PP

                    HHHHH.HHHCC....EE.EEES-..----TTT............................S----TTHH..HHHHTT-C......CCCHCCH.S-H CS
  Abhydrolase_6  77 alala.aapla..lvvg.vlldppptalpagl............................laaalelll..allallrl......lawlsre.plp 131
                    +++   +  +   +  g +l+ +   a+ +gl                             +      l  +l+    +      +awls++ ++ 
     EGE27650.1 167 FIVRTvL-THHstRFDGvILMGT---ADSFGLlnrmslvsfgllnqlfakqvnqkaahlmNHV-----LlsQLR----SpisaspFAWLSENiDAV 249
                    *999943.333576677677777...4555544455555554454455555554322221111.....122111....123334469998887555 PP

                    SCCCCHHH...C..CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEECTT-C......HHHHCHHCCCHSTTEEET.CE...SSS.-HHH CS
  Abhydrolase_6 132 rlfladed...a..daawrarlarlaallaglgllpaaawadlpvpllvlggeDp......lvprllerllaqagarlp.vvlpgaGH.lphl 211
                    r f  d+    a     w + +a +++ + +++   +++ +   + ll+ g +Dp       ++ l e+l + a + +  +++p+  H  +h+
     EGE27650.1 250 RAFETDPLtgfAftNNGWMTLFALMQRAMRPDW---YTNMPSNYPILLISGNNDPvgnmgqDIQTLQEKLIH-ANCSVSvQLYPNMRHePLHE 338
                    455555554441447889999999888888777...556666666664426777777666544444444444.44444337777777744443 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.3e-07   0.00094       8      93 ..      93     184 ..      88     193 .. 0.83
   2 !   12.3   0.0   5.9e-05     0.088     137     209 ..     283     356 ..     260     358 .] 0.88

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.3e-07
                   HHHHCCT-EEEEE--TTSSTTHCHHHHTT...SGGGGHHHHHHHHHHHHHHHHTTS--GGG...EEEEEETHHHHHHHHHHHH-GGG-SEEE CS
  Peptidase_S9   8 qlladrGyvvvvanirGsggyGeafhdag...krklgqnefdDfiaaaealakegyvdser...laitGgSyGGyltgaalnqrpdlFkaav 93 
                    +lad+G+ v+  +  G g+  ++ ++ g   +++  q   +D+i +a++l ++  + ++r    +i+G+S G + + ++l++++ +F++++
    EGE27650.1  93 RFLADNGVLVATYDQLGHGQTVKDKYELGffdEKHPVQTLCKDVIIMADKLKDKARTLTSRpvpHYIMGHSMGSFIVRTVLTHHSTRFDGVI 184
                   57899999999999999999999988888454455557889**********999955555422258***********************998 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.9e-05
                   GGG-----EEEEEEETT-SSS-THHHHHHHH.HHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHHHHHC CS
  Peptidase_S9 137 ldnvkaypplLlihGlaDdrvppaealklva.aLqkkgknvlllifpdegHgvgkprakveelarllaFlkeal 209
                   ++n+  + p+Lli G +D    + + ++ ++ +L  ++  v ++ +p+ +H    +++ ++ + ++la+++++l
    EGE27650.1 283 YTNMPSNYPILLISGNNDPVGNMGQDIQTLQeKLIHANCSVSVQLYPNMRHEPLHEKQAQKVFVDILAWIERHL 356
                   56666889***************888876642899****************999999999***********998 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.6e-07   0.00023      18     118 ..      88     186 ..      86     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.6e-07
  LIDHydrolase  18 YetFlsllseklnpelevlgishaGfeleeee....keakenekvfsLedQiehkedflkellekaksekdvklilvGHSvGaYialevlkrlsers 110
                   Y +F++ l+++    + v ++ + G+ ++ ++       +e+++v +L + +    d+lk+  + +  ++ v  +++GHS G++i+  vl+++s+r 
    EGE27650.1  88 YADFARFLADN---GVLVATYDQLGHGQTVKDkyelGFFDEKHPVQTLCKDVIIMADKLKDKAR-TLTSRPVPHYIMGHSMGSFIVRTVLTHHSTR- 179
                   77888888888...56677777777777666644555668889999999999999999999987.667889999*********************9. PP

  LIDHydrolase 111 ikkvvlLf 118
                   +++v+l +
    EGE27650.1 180 FDGVIL-M 186
                   555543.3 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06    0.0023     144     188 ..     289     334 ..     279     354 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
         DLH 144 kapilalfgeeDefipade.vekleealkaanvdlelkvYpgagHa 188
                 + pil + g++D++ ++++ +++l+e+l++an  + +++Yp+  H 
  EGE27650.1 289 NYPILLISGNNDPVGNMGQdIQTLQEKLIHANCSVSVQLYPNMRHE 334
                 68**************98779*********************9995 PP

>> Acyl_transf_2  Acyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.3e-05     0.065      30      68 ..      72     110 ..      49     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
                    S-EEEEE-TT-GGGGGGHHHHHHHHTTT--EEEE---B- CS
  Acyl_transf_2  30 nntiviasgfarrmdhfaglaeylsengfhvirydslnh 68 
                    + t++i  g++     +a +a +l++ng  v  yd l h
     EGE27650.1  72 KATLLIVHGMSEHGGRYADFARFLADNGVLVATYDQLGH 110
                    689**********************************99 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.32      53      90 ..     153     189 ..     131     230 .. 0.71
   2 ?   -0.9   0.0      0.83   1.2e+03      98     125 ..     287     315 ..     258     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
  Abhydrolase_5  53 apklekfvvgGhslGGvvasrfaaeee.kiegvvflasY 90 
                     p ++ +++ Ghs+G  ++  + ++++ + +gv+++++ 
     EGE27650.1 153 RP-VP-HYIMGHSMGSFIVRTVLTHHStRFDGVILMGTA 189
                    34.44.6789******999999888866*******9864 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.83
  Abhydrolase_5  98 elskkvlsivgteDgvlnv.kslekakkf 125
                      + ++l i g++D v n+ ++++  +++
     EGE27650.1 287 PSNYPILLISGNNDPVGNMgQDIQTLQEK 315
                    46789999999999998873345555555 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00045      0.67      48      92 ..     148     191 ..     138     253 .. 0.80
   2 ?    0.2   0.0       0.4   5.9e+02     108     132 ..     283     307 ..     268     315 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00045
                    HHHHC-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SG CS
  Ser_hydrolase  48 aaveaaeekvvlvAHSlgclavlhaaelqlakkvagalLVapadv 92 
                    ++++  + + +++ HS+g  +v  ++  ++  + +g++L   ad 
     EGE27650.1 148 RTLTSRPVPHYIMGHSMGSFIVRTVL-THHSTRFDGVILMGTADS 191
                    4556667789************9999.9*************9996 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.4
                    S-SSHHCCHCEEEEETTBTTC-HHH CS
  Ser_hydrolase 108 lpreklpfpslvvaSenDpyvsfee 132
                    + + + ++p l+++ +nDp+ ++ +
     EGE27650.1 283 YTNMPSNYPILLISGNNDPVGNMGQ 307
                    45556677779********998876 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0024       3.5      43     208 ..     127     334 ..     125     337 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0024
                    S-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---....................................... CS
  Abhydrolase_3  43 hpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepk....................................... 99 
                    hp+ + ++d++ ++  l+++a +l   p   +++G S G  ++  v+     +                                           
     EGE27650.1 127 HPVQTLCKDVIIMADKLKDKARTLTSRPVPHYIMGHSMGSFIVRTVLTHHSTRF--Dgvilmgtadsfgllnrmslvsfgllnqlfakqvnqkaah 220
                    555566666666666666665566666666666666666666555553333331..1122334444444444444444444444444444444444 PP

                    .........EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSC..HHHHHHHHHHHS.SGGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHH CS
  Abhydrolase_3 100 .........vagqvliyPvtdlertesesikkaeeladgpllt..raaldlfwrlyl.peadrddplaspllaedlsglpptlvvvaefDplrdeg 183
                             ++  +  +P     +  se+i+  ++++++pl      +  +++   l ++a r d++ +           p+l++ + +Dp  + g
     EGE27650.1 221 lmnhvllsqLRSPISASPF----AWLSENIDAVRAFETDPLTGfaFTNNGWMTLFALmQRAMRPDWYTNMP------SNYPILLISGNNDPVGNMG 306
                    3333222122222222221....222344444455544455331122222322222222444445555544......3457888888888866555 PP

                    ...HHHHHHHHHTT--EEEEEETTEETT CS
  Abhydrolase_3 184 ...eayaerlraagvevelieyegmvHg 208
                       + + e+l +a+ +v+++ y++m H+
     EGE27650.1 307 qdiQTLQEKLIHANCSVSVQLYPNMRHE 334
                    1114566777788888888888888886 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0002       0.3      20      70 ..     143     191 ..     135     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
  Catalase_C  20 akalaaalaaegvdvtvvaeklgsaegvnrTYstadaveFDaivvadgaes 70 
                 +k+ a++l+++ v   + ++++   + + rT +t  ++ FD++++ + a+s
  EGE27650.1 143 LKDKARTLTSRPVPHYIMGHSM--GSFIVRTVLTHHSTRFDGVILMGTADS 191
                 5566778999999999999999..889*****************9988765 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00015      0.23     106     146 ..     143     186 ..      81     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
                 HHHHCSEECCC...EEEEEETHHHHHHHHHHHCSTTTCCEEEEE CS
    Esterase 106 ldanfrtapdg...ravaGqSmGGlgALilalkhpdrFgsvssf 146
                 l+++ rt +++   + ++G+SmG ++  ++ ++h +rF  v+ +
  EGE27650.1 143 LKDKARTLTSRpvpHYIMGHSMGSFIVRTVLTHHSTRFDGVILM 186
                 66666776666777************************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2570.78
//
Query:       EGE27651.1  [L=354]
Description: lipoyl synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-10   39.5   0.0    1.2e-09   38.8   0.0    1.3  1  Radical_SAM  Radical SAM superfamily
    1.3e-05   25.5   0.2    2.9e-05   24.4   0.2    1.5  1  LIAS_N       N-terminal domain of lipoyl synthase of Radical_


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.3e-13   1.2e-09       4     167 .]      98     259 ..      95     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.3e-13
                  ESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEECSSCHGHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   4 trgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla....vpgiritvetngtlpdeeklerl 97 
                  +  C++rC+fC + +     gr+  l+++e ++ ++ +    g k+ ++++ + ++ +d     +  + ++    +p+  i + ++ ++ +e ++  l
   EGE27651.1  98 GDICTRRCPFCEVAH-----GRPNPLDKDEPKHTAETI-LGLGLKYAVITSVDRDDLKDGGAGHFVDVINEskalSPNCLIEILVPDFRGREQVALDL 189
                  678***********7.....9*****************.89999999999999999988888888888888788899999999999999996666666 PP

                  HHTT.-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET..EEEEEEEBTTTSHHHHHHHHHHH CS
                  xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  98 lelg.vdrvslgleaaddekvlklmnrghtfeevlealeklreagikr..vvdrivglpGendeeleellell 167
                  l    +d++++++e++      k +++g ++++ l++l+ ++++  ++  ++ + +++ Ge+++e+ +ll++l
   EGE27651.1 190 LTQTaPDVFNHNIETVPRL--YKAFRPGSDYQHSLNLLKEYKAR-RPDvaTKCGFMVGLGETEDEVYALLDDL 259
                  66666************95..66666******************.6777*9999999999******9999875 PP

>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.2   3.2e-09   2.9e-05      72     108 .]      44      80 ..      33      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3.2e-09
      LIAS_N  72 rLPswlktkiPlGknynkikndlreLnLhtvCeeaRC 108
                 + P+w++ k+   ++ ++ik +lr+ +L tvCeea C
  EGE27651.1  44 KKPDWIRVKLSSPAEVERIKGTLRKQKLYTVCEEAAC 80 
                 569********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2821.66
//
Query:       EGE27652.1  [L=321]
Description: ferrochelatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.3e-106  354.3   0.0   5.9e-106  354.1   0.0    1.0  1  Ferrochelatase  Ferrochelatase


Domain annotation for each model (and alignments):
>> Ferrochelatase  Ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.1   0.0  3.3e-110  5.9e-106       1     315 [.       3     319 ..       3     321 .] 0.98

  Alignments for each domain:
  == domain 1  score: 354.1 bits;  conditional E-value: 3.3e-110
                     .EEEEEEE----SSC..CCHHHHHHHHCT-TTTS-S-.TTTHHHHHHHHHHHHHHHHHHHHHHT..TSS-SHHHHHHHHHHHHHHHHHHH---EE CS
  Ferrochelatase   1 ktavLLlnlGgPekp..edvrpflenllsdrrvielp.lllqkllaklilkerlekvaekYeki..gggSPlneitrkqaealekelaergidvk 90 
                     kta++L+nlG+P++p  ++vr++l+++lsd+rvie+p l++q +l +++l++r+++va++Y++i  ++gSPl++i ++qa+ l++ l+++gi+ +
      EGE27652.1   3 KTAIILVNLGTPDAPtpKSVRRYLKEFLSDTRVIEIPkLIWQVILTGFVLTTRPKRVAHAYASIwmDDGSPLLVILKNQAKDLQDLLSQQGIKTP 97 
                     79***************************************************************9***************************** PP

                     EEEEESSSSSBHHHHHHHHHCTT-SEEEEEES-SS--TTTHHHHHHHHHHHHHHTT-SSEEEEE---TT-HHHHHHHHHHHHHHHTTS-HC.C-E CS
  Ferrochelatase  91 vylamrywePsiedaleelkadgvervvvlplyPqysasttgssleeleralkkkreapevrvirqfydhpgyiealaesikealeelpeekkak 185
                     vy a +y++Psi++++e+l adgv  ++vlpl+Pqysa++t+++++++++ l +kr+ pe+++i ++++hp+yieala+s++++++ +  ++++k
      EGE27652.1  98 VYPATTYGNPSIKSVIEDLLADGVSSLIVLPLFPQYSATSTAAAFDKIAKLLLHKRQLPELHFITEYHNHPTYIEALAQSVERYWAVH--GRADK 190
                     **************************************************************************************99..6779* PP

                     EEEEEE--BHHHHT.TT-SHHHHHHHHHHHHHHHTTT-S.-EEEEEE---SSS-BSSSBHHHHHHHHCCC.-S-EEEE-TT-SS--HHHHIIIII CS
  Ferrochelatase 186 llfsaHglPeravkkkgdpYqqqveetarlvaealglke.evelayqSrvGpeeWlePdtddtleelaekgvkaivvvpigFvsDhlEtleeldi 279
                     ll+s+Hg+P+ ++ +kgdpY++q++ ta l+a++lgl+  e+ +++qSr+G +eWl+P+td+ l e+ ++   ++ v++++F++D+lEtleel++
      EGE27652.1 191 LLMSFHGIPKPYA-DKGDPYPEQCRTTAVLLADRLGLSInEWAMSFQSRFGAQEWLKPYTDELLGEWGAAR-LSVQVISPAFSADCLETLEELAV 283
                     ************9.78*******************888778****************************98.9********************** PP

                     IIITTSTT..CCCEEE----TT-HHHHHHHHHHHHH CS
  Ferrochelatase 280 earelaeeaggekfvrvptlndspafiealadlvee 315
                     e++  + +agg+++ ++p+ln+++ +i+++a+lv++
      EGE27652.1 284 ENKGNFLQAGGRTYDYIPALNTDELHIQMMAELVKQ 319
                     **********************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2373.87
//
Query:       EGE27653.1  [L=64]
Description: glutathione synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-16   59.8   0.0    2.5e-16   59.6   0.0    1.1  1  GSH-S_ATP  Prokaryotic glutathione synthetase, ATP-grasp doma


Domain annotation for each model (and alignments):
>> GSH-S_ATP  Prokaryotic glutathione synthetase, ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.0   1.4e-20   2.5e-16     135     173 ..       1      39 [.       1      41 [. 0.95

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.4e-20
                 HHHHHHHTT--EEEEEEETTEEEEEE-SS---HHHHHHH CS
   GSH-S_ATP 135 lapkLkekGllfvGlDvigdkltEinvtsPtgireieel 173
                 +ap+L ekGl+fvGlDvig+++tEinvtsPt++rei+++
  EGE27653.1   1 MAPTLLEKGLYFVGLDVIGGYITEINVTSPTCVREIDDQ 39 
                 689*********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 488.18
//
Query:       EGE27654.1  [L=367]
Description: undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-42  142.5   0.8    1.6e-41  141.6   0.8    1.5  1  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
    9.9e-41  139.5   0.3    1.5e-40  138.9   0.3    1.3  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
     0.0013   18.8   0.1     0.0036   17.3   0.0    1.7  2  Glyco_transf_4   Glycosyltransferase Family 4
  ------ inclusion threshold ------
      0.058   12.2   0.0       0.12   11.1   0.0    1.5  2  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
       0.07   13.6   0.1       0.18   12.3   0.1    1.7  1  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.8   4.5e-45   1.6e-41       1     138 [.       7     144 ..       7     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 4.5e-45
                      EEEEE-SSHHHHHHHHHHHHHHHCTT-EEEEEEETCCCHHHHHHCCT-EEEE---GHCTT..CHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC CS
  Glyco_transf_28   1 ivllggGTgGhvfPalAlakeLkkegheVrylgtkrgleerlveeaglefepiageklrrklspknlkeilkvlkavvkakkilkeakpdavvg 94 
                      +++++ GTgGhvfPalA+a+e+ ++g  +++lgt++g+e++lv ++g +++ i++++lr+k+ ++ +k ++ ++kav ++k i+k+ ++d+v+g
       EGE27654.1   7 VLMMAAGTGGHVFPALAVADEMVARGAVIHWLGTPKGMENELVAKHGHTMHHIDMQGLRGKGLVRAIKLPFMLFKAVMASKNIIKNNNIDVVIG 100
                      6899**********************8888**************************************************************** PP

                      CCCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCCCC-SCCC CS
  Glyco_transf_28  95 tggyvslpaviaaplaripviihEqnaipglanktlsrtatkva 138
                      +ggyv +p ++aa+l++ip+iihEqnai+g+ nk l+r a+kv+
       EGE27654.1 101 FGGYVTAPGGLAAKLCKIPLIIHEQNAIAGMSNKNLARHADKVL 144
                      ******************************************97 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.3   4.2e-44   1.5e-40       2     163 ..     188     349 ..     187     356 .. 0.89

  Alignments for each domain:
  == domain 1  score: 138.9 bits;  conditional E-value: 4.2e-44
                      EEEEE-SSSHHHHHCCCTSHHHHHHHHHHHHCHHHCCT-EEC---STT-TTTT.....CEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHH CS
  Glyco_tran_28_C   2 ilVtGGSqgaeaLnelvlselkllelksrelqvlhqtGkreleevkikveelt.....lkvevfefidkmaeaikaadLvIsRAGagtiaElla 90 
                      +lV+GGS ga+a+ne+v + lkl  +    l v+hq+Gk++ + +   +++ +     + +ev++fid+ma+a+++ad+vI+RAGa t+ E+++
       EGE27654.1 188 VLVVGGSLGAKAINEAVVELLKLSDKP---LTVRHQCGKDNHNTMLVAYSQAQidtsrHVFEVMPFIDDMAQAYSWADVVICRAGALTVTEIAS 278
                      89*****************99999998...**********999999998888888999************************************ PP

                      TT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S---SSCH..CHHHHH CS
  Glyco_tran_28_C  91 lgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrlaekskasaaskfadl 163
                      +g+ +I+vplp+a ++hq+ Nak+l+++ga+++l q el++e+L++ l+ l  +k+   + +ka+ +s++  +
       EGE27654.1 279 VGVAAIFVPLPHAVDDHQTANAKSLTDKGAGILLPQHELSGETLAQILTGLDRQKCL-DMAKKAQ-ESAKHHV 349
                      ************************************************999999985.3333332.3333333 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     1e-06    0.0036       8     150 ..      21     171 ..      14     178 .. 0.71
   2 ?   -1.9   0.0      0.82   2.9e+03     127     139 ..     254     266 ..     241     293 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1e-06
  Glyco_transf_4   8 vleLaraLarrGheVtvv.tpgddgpleeevelvvrvprvplpllkrllr.........slaflrrlrrllkrekpDvvHahspaalgaallalr 92 
                     +l +a ++ +rG  ++ + tp++ + +  + ++++ ++ + + +l++ ++          + ++ + ++++k++++Dvv   + +    ++la++
      EGE27654.1  21 ALAVADEMVARGAVIHWLgTPKGMENELVA-KHGHTMHHIDMQGLRGKGLvraiklpfmLFKAVMASKNIIKNNNIDVVIGFGGYVTAPGGLAAK 114
                     567788888888888888776666666666.6666666666655554332111111111334445678999999********************* PP

  Glyco_transf_4  93 rrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelre 150
                     +  +ipl+++  +  +    k+  + ++++l+a+   + +  ++v++v + +++ ++ 
      EGE27654.1 115 L-CKIPLIIHEQNAIAGMSNKNLARHADKVLQAFDGAFDSDGKKVLTVGNPVRQSIAN 171
                     9.*******9999998666777777777777777777788888888888888887765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.82
  Glyco_transf_4 127 errllrradrvia 139
                     +++++++ad vi+
      EGE27654.1 254 MAQAYSWADVVIC 266
                     5778999999999 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.82     3e+03     127     156 ..     105     134 ..      81     139 .. 0.70
   2 ?   11.1   0.0   3.5e-05      0.12     345     403 ..     265     327 ..     251     338 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.82
       UDPGT 127 vlpcgellAellkiptvyllrdvpgqaaek 156
                 v+  g l A+l kip+++  ++  + + +k
  EGE27654.1 105 VTAPGGLAAKLCKIPLIIHEQNAIAGMSNK 134
                 666688999999999998887776666555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3.5e-05
       UDPGT 345 vtHaGangvyEaisnGvPmvglPlFg....dqrdNikrmeakgaavtlnvkemtsedllnAlk 403
                 +  aGa +v E  s Gv  + +Pl       q+ N+k+++ kga++ l  +e++ e l++ l 
  EGE27654.1 265 ICRAGALTVTEIASVGVAAIFVPLPHavddHQTANAKSLTDKGAGILLPQHELSGETLAQILT 327
                 7899******************995323225999*********************99988775 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   4.9e-05      0.18      34     104 ..     218     290 ..     180     330 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.9e-05
                      EEEES---..HHHHHHHT...T-T.T.EEEE---THHHHHHHH-SEEEE-----SHHHHHHHHTT-EEEE-TGGG CS
  Glyco_trans_1_4  34 lvivGdgprpeeleelaa...gleer.veftGfvedlaellaaadvfvaPsegfglkllEamaaglpvVatdvgg 104
                       + +G+++ +  l ++ +   + + + +e++ f++d+a++++ adv+++      l++ E +++g++ +  +++ 
       EGE27654.1 218 RHQCGKDNHNTMLVAYSQaqiDTSRHvFEVMPFIDDMAQAYSWADVVICRA--GALTVTEIASVGVAAIFVPLPH 290
                      45556443222333322221322233499*******************977..4799999999999999888853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2836.53
//
Query:       EGE27655.1  [L=174]
Description: GNAT family acetyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-20   72.5   0.1    6.3e-20   72.3   0.1    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.2e-12   48.3   1.5    1.6e-12   47.8   1.5    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    1.5e-11   44.5   0.0      2e-11   44.1   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0094   15.5   0.1      0.016   14.8   0.1    1.4  1  GNAT_acetyltran  GNAT acetyltransferase
  ------ inclusion threshold ------
       0.05   14.2   0.4       0.97   10.1   0.2    2.3  2  P63C             P63C domain
      0.062   12.8   0.0      0.071   12.6   0.0    1.3  1  Baculo_PP31      Baculovirus 33KDa late protein (PP31)
       0.11   12.5   0.0       0.22   11.5   0.0    1.5  1  FR47             FR47-like protein
       0.16   12.4   0.3       0.31   11.5   0.3    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.1   2.8e-23   6.3e-20      19     138 .]      29     149 ..      12     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 2.8e-23
  Acetyltransf_3  19 rsdpevmrylpe..pltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlapsfwgkGyateavralleyafee 111
                     ++  ++ ++lp+  + ++   +e+++ a+++ +++++    i+  d+++iG v+l+++ ++ ++ae+gy+l+++++g+G++t avra++++a + 
      EGE27655.1  29 AQKDDLGKWLPWanDFSENSYREFVKFALHQYADDKAIHTHII-YDDKIIGAVSLNNIYHQLKKAEIGYWLHQDHRGRGVMTCAVRAIMDIAKNI 122
                     4556688999997777777778888855888888888777774.55559*******************************************999 PP

  Acetyltransf_3 112 lglerlvavidkeNeaSirvleklGfe 138
                      g++ +++++ ++N  S++v+++lGfe
      EGE27655.1 123 YGMNVVEIKAGEHNIPSQQVAKRLGFE 149
                     9*************************7 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   1.5   7.2e-16   1.6e-12       2     154 ..      27     168 ..      26     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 7.2e-16
  Acetyltransf_4   2 raateeDakeilaiyaeyvvntaitfeyevssveefekf.lealdsekeyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglg 95 
                     + a+++D+ ++l + ++        f   ++s  ef kf l+++  +k +   ++++d+i+G   l+++    + +kae+ ++l ++d + +g+ 
      EGE27655.1  27 VNAQKDDLGKWLPWAND--------FS--ENSYREFVKFaLHQYADDKAIHTHIIYDDKIIGAVSLNNIYH--QLKKAEIGYWL-HQDHRGRGVM 108
                     56777777777777775........33..577888887647787778888889999***************..***********.59******** PP

  Acetyltransf_4  96 relidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDmi 154
                        + a+++++   ++++  +++    n++s+q++k+lGFe+ gi  ++ ++ng+ i++ 
      EGE27655.1 109 TCAVRAIMDIAkNIYGMNVVEIKAGEHNIPSQQVAKRLGFEFCGIIANHENINGEIINHA 168
                     ***********777999999999999*******************************986 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0     9e-15     2e-11      17     117 .]      45     148 ..      24     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 9e-15
                     HHHHHHHHHHH...HHSTTC.EEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTE CS
  Acetyltransf_1  17 edaseeefees...fsleae.gllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedn 105
                     ++ s++ef ++       ++  +   + +d+++iG +sl+ i++   ++a+i +++ + ++rg+G+ +  ++a++++a++  g + +++   e+n
      EGE27655.1  45 SENSYREFVKFalhQ-YADDkAIHThIIYDDKIIGAVSLNNIYH-QLKKAEI-GYWLHQDHRGRGVMTCAVRAIMDIAKNIyGMNVVEIKAGEHN 136
                     333444422222211.122224444678999*************.6788888.****************************999*********** PP

                     HHHHHHHHHTTE CS
  Acetyltransf_1 106 daairlYeklGF 117
                      +++ + ++lGF
      EGE27655.1 137 IPSQQVAKRLGF 148
                     *******88**9 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   7.1e-06     0.016     137     236 ..      38     150 ..       6     153 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.1e-06
  GNAT_acetyltran 137 eewskdf.veqfesyedfk......kkGlGvvilkngeivsgasSysvyek..gieieidTkedyrrkgLAtivaaalileclkr...glyPsW 218
                       +w++df ++ ++++ +f+       k +   i+++++i+ ++s   +y++  ++ei  + ++d+r++g  t++  a i +  k+     + + 
       EGE27655.1  38 LPWANDFsENSYREFVKFAlhqyadDKAIHTHIIYDDKIIGAVSLNNIYHQlkKAEIGYWLHQDHRGRGVMTCAVRA-IMDIAKNiygMNVVEI 130
                      57888886445666555532111146789999********988888888862267888889********98765555.5554444121456778 PP

  GNAT_acetyltran 219 Daa..neaSvaLaekLGYef 236
                       a   n +S ++a++LG+ef
       EGE27655.1 131 KAGehNIPSQQVAKRLGFEF 150
                      88678*************98 PP

>> P63C  P63C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00043      0.97      10      58 ..      37      91 ..      31     101 .. 0.72
   2 ?    1.9   0.0      0.16   3.5e+02      28      54 ..     145     171 ..     140     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00043
        P63C 10 llkwekrFpdefykelyrlrgwkykpsakkkpk......vvgkltnelvYerLak 58
                 l+w++ F ++ y+e+++   ++y++++  +++      ++g +  + +Y++L+k
  EGE27655.1 37 WLPWANDFSENSYREFVKFALHQYADDKAIHTHiiyddkIIGAVSLNNIYHQLKK 91
                579***************9999999666555441111114566666667776665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.16
        P63C  28 lrgwkykpsakkkpkvvgkltnelvYe 54 
                   g+++ +   ++ ++ g+++n+ vY 
  EGE27655.1 145 RLGFEFCGIIANHENINGEIINHAVYM 171
                 567888888899999***********5 PP

>> Baculo_PP31  Baculovirus 33KDa late protein (PP31)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.2e-05     0.071     152     185 ..      46      83 ..      19     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.2e-05
  Baculo_PP31 152 sklYnEFyrvltetfkngsaPassfiYdlklkk....e 185
                   + Y+EF +   + +++++a  +++iYd k+ +    +
   EGE27655.1  46 ENSYREFVKFALHQYADDKAIHTHIIYDDKIIGavslN 83 
                  578*************************7776554441 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.22      29      78 ..      98     149 ..      81     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                 E-GGG-SSSHHHHHHHHHHHHHHH..S-S-EE.EEEETT-HHHHHHHHHHT-E CS
        FR47  29 vlpehrrrGlgsrlvkalakeiae..rgktvl.lvvvasNtpsirlyeklGfe 78 
                 ++++hr+rG  +  v+a+  +ia+   g +v+ + ++++N ps+++ ++lGfe
  EGE27655.1  98 LHQDHRGRGVMTCAVRAIM-DIAKniYGMNVVeIKAGEHNIPSQQVAKRLGFE 149
                 689*********9999986.5666354554432678999*************8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00014      0.31       5      49 ..      68     119 ..      61     150 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                     EEEEEETTEEEEEEEEEEES....TCTEE...EEE-GGGTTSSHHHHHHHH....T CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld....aeitr...laVdpeyrgkGiGraLlea....a 49 
                     ++++  d+ki+G ++l  +              + ++++rg+G+ +  ++a    a
      EGE27655.1  68 THII-YDDKIIGAVSLNNIYhqlkK---AeigYWLHQDHRGRGVMTCAVRAimdiA 119
                     4544.469999*9988888755443...0445889********9887777634331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1524.94
//
Query:       EGE27656.1  [L=486]
Description: UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-28   99.0   1.0    2.9e-28   98.0   0.6    1.7  2  Mur_ligase       Mur ligase family, catalytic domain
    2.3e-28   99.5   0.1      8e-28   97.7   0.0    1.8  2  Mur_ligase_M     Mur ligase middle domain
    2.7e-21   75.6   0.0      1e-20   73.8   0.0    2.0  2  Mur_ligase_C     Mur ligase family, glutamate ligase domain
     0.0094   15.0   0.5     0.0094   15.0   0.5    2.2  3  RACo_C_ter       C-terminal domain of RACo the ASKHA domain
  ------ inclusion threshold ------
      0.012   15.8   3.3        1.2    9.3   0.1    3.2  3  DUF211           Uncharacterized ArCR, COG1888
      0.012   14.6   0.5      0.038   13.0   0.2    1.9  2  PDH              Prephenate dehydrogenase
       0.02   14.8   0.8      0.092   12.6   0.3    2.0  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.11   13.1   0.0        4.8    7.9   0.0    2.7  2  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.6   1.3e-31   2.9e-28       2      87 ..      26     123 ..      25     124 .. 0.98
   2 ?   -3.4   0.0       5.8   1.3e+04      39      62 ..     170     205 ..     161     208 .. 0.62

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 1.3e-31
                 EEEESTTSCCHHHHHHHHHHTTSEEEEEESSHC.....HHHTT-EEEES-HGGGG......EE-T.S-TTCHHHHHHHHTTEEEEEHHHHHHHHHHCC CS
  Mur_ligase   2 ihfigidgrgmsagalflalkGykvdGsdfies.....lialGaaavvghdaani......vvss.iskdnpeleaakepgipvesraeaLaelaarf 87 
                 ihf+gi+g+gm ++a++la++Gy v+Gsd++++     l++lG++++vghda+ni      vvss i+++npe+ aa +  ipv++ra++L+el++++
  EGE27656.1  26 IHFVGIGGAGMCGIAEVLANQGYVVTGSDIKANamterLENLGVTVHVGHDASNIkmadvvVVSSaIDRQNPEIRAALKAHIPVVRRADMLGELMRYR 123
                 9************************************************************9999******************************986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.8
                 T-EEEES-HGGGG............EE-TS-TTCHH CS
  Mur_ligase  39 Gaaavvghdaani............vvssiskdnpe 62 
                 Ga+ +++ +a+              vv++i++d+ e
  EGE27656.1 170 GASRYLVAEADESdasflslrpmacVVTNIDEDHME 205
                 555555554443344555667777777778888655 PP

>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.74   1.6e+03     101     150 ..      39      84 ..      35     107 .. 0.73
   2 !   97.7   0.0   3.6e-31     8e-28       1     191 [.     128     307 ..     128     308 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.74
                   HHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEE CS
  Mur_ligase_M 101 lferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlrakn 150
                   + e l ++g++v+  d + a++++++l++ +v +v +g+++ +  ++ ++
    EGE27656.1  39 IAEVLANQGYVVTGSDIK-ANAMTERLENLGV-TVHVGHDASN--IKMAD 84 
                   556677888999998888.8888888888876.5666777666..44444 PP

  == domain 2  score: 97.7 bits;  conditional E-value: 3.6e-31
                   EESSS-HHHHHHHHHHHHHCT.EEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCH.CBESEEEE---TSTTHHHH.SSHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka.gkvigtvgttnneiglpktlaemekkeaeyavlEvsshglgekrlegl.lkpdvavitnispdHldfh.gtleny 94 
                   v+G +GKTTtt+l+  +l++a    + ++g   n+ g +++l        +y+v E+ ++       + l l+p + v+tni++dH++ + g++++ 
    EGE27656.1 128 VAGAHGKTTTTSLLTMMLTEAgLDPTYVIGGKLNASGKNAAL-----GASRYLVAEADES-----DASFLsLRPMACVVTNIDEDHMETYeGSFDKL 214
                   89****************999566999999855555555555.....78899********.....5555558****************998****** PP

                   HHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M  95 aeaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaaiaa 191
                   ++a  +++ +++  g+av+  dd+   el +++ +    v+t+glek++ d++a ++ ++ ++t++++l+ +++ l i+++++G hnvyNal ai +
    EGE27656.1 215 KQAYVQFLHNMPFYGLAVLCGDDK---ELYAMIDDIARPVITYGLEKHN-DVQAVDVIADGTKTHFTVLRKDKKPLPITLNIPGIHNVYNALGAITM 307
                   ************************...777777777666*********9.79999**************99***********************987 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.6     1e+04      38      56 ..     120     135 ..     100     148 .. 0.67
   2 !   73.8   0.0   4.5e-24     1e-20       4      89 ..     331     419 ..     328     421 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.6
                   SSSSEEEEEEEESTT.CCS CS
  Mur_ligase_C  38 apdkrlilvfgpggelger 56 
                     +++ i+v+g+  + g+ 
    EGE27656.1 120 MRYRHGIAVAGA--H-GKT 135
                   446677888887..4.334 PP

  == domain 2  score: 73.8 bits;  conditional E-value: 4.5e-24
                   SSEEEEE......TTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS-TTSTHHH CS
  Mur_ligase_C   4 Rlevvge......adgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdypraedsia 89 
                   R+e  g+      +++v++idDy+h+p+++  ++ka+r+++pd+rl++ f+p  ++++rtr+++ ef  ++s+ +d+l++l++y+++e+ i+
    EGE27656.1 331 RFENNGSypltdgSGDVVLIDDYGHHPTEIAMTIKAARQSYPDRRLVMMFQP--HRYSRTRDCFSEFVNVLSQ-VDKLILLDVYSAGEELIK 419
                   5555555555555789************************************..*******************.99***********99765 PP

>> RACo_C_ter  C-terminal domain of RACo the ASKHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.5   4.2e-06    0.0094      61     242 ..      18     207 ..       6     219 .. 0.68
   2 ?    0.1   0.0      0.15   3.3e+02     104     149 ..     264     308 ..     242     322 .. 0.72
   3 ?   -3.8   0.0       2.3   5.1e+03     107     136 ..     430     462 ..     418     468 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.2e-06
                 EEEEECTSS--SEEEHHHHHHHHHHHHHTTSB-TTS-B-GGG-TTTEEEETTCEEEEEE-GGGSSSS-EEEEHHHHHHHHHHHHHHHHHHHHHHHHTT- CS
  RACo_C_ter  61 velkvigdekakGicGsGiidliaelleagiidkkgklnkelkserireeeetleyvlakaeetetkdivitekDieelikakaAiyagiktLleevgl 159
                 +e++ i++ + +Gi G+G+  + + l ++g++ +   ++ ++ +er+++   t  +v ++a++ +++d+v+ ++ i++    + A   ++  +++++++
  EGE27656.1  18 PEMRRIQNIHFVGIGGAGMCGIAEVLANQGYVVTGSDIKANAMTERLENLGVT-VHVGHDASNIKMADVVVVSSAIDRQNPEIRAALKAHIPVVRRADM 115
                 6788899999****************************888777777755444.4445555656667*********98887766666666666666665 PP

                 ...-GGG--EEEEESSGGGCEEHH....HHHHHTSS-S.S-GGGEEEECSHHHHHHHHHHCBHHHHHHHHHH.HHHEEE--TTSSSHHHHHH CS
  RACo_C_ter 160 ...evediekvylAGafGsyidae....kAitiGllPd.lelekvvqvGNtslagAreallseealeeleei.arkityielateeeFqeey 242
                     ++  + + +AGa G+    +      ++ Gl P+ +   k+ + G  +  gA + l+ e+  ++++ +  r +  + ++ +e+ +e+y
  EGE27656.1 116 lgeLMRYRHGIAVAGAHGKTTTTSlltmMLTEAGLDPTyVIGGKLNASGKNAALGASRYLVAEADESDASFLsLRPMACVVTNIDEDHMETY 207
                 111455556799******97654411113445577776233456666665455555555555554444444414556777777777777777 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.15
                 TTTEEEETTCEEEEEE-GGGSSSS-EEEEHHHHHHHHHHHHHHHHH CS
  RACo_C_ter 104 serireeeetleyvlakaeetetkdivitekDieelikakaAiyag 149
                 +  + ++ +++++++ +++ ++   i+++   i+++ +a +Ai  +
  EGE27656.1 264 AVDVIADGTKTHFTVLRKD-KKPLPITLNIPGIHNVYNALGAITMA 308
                 3344455555566665555.33369*****************9765 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.3
                 EEEETTCEEEEEE-GGGSSS.S..-EEEEHHHH CS
  RACo_C_ter 107 ireeeetleyvlakaeetet.k..divitekDi 136
                 +re+ + + +vl  ++++++ +  +i+++ +D+
  EGE27656.1 430 LRERGQVEPIVLNVNDKEQItQvlKITLNANDL 462
                 455555556666666655554445777777776 PP

>> DUF211  Uncharacterized ArCR, COG1888
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0066        15      50      73 ..      49      72 ..      37      96 .. 0.93
   2 ?   -4.0   0.0       7.9   1.8e+04      72      82 ..     262     272 ..     256     279 .. 0.55
   3 ?    9.3   0.1   0.00055       1.2      13      56 ..     419     462 ..     402     469 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0066
                EEEESSE-HHHHHHHHHCTT-EEE CS
      DUF211 50 tieGenidyeeieeaieelggvih 73
                +++G++i  ++++e +e+lg ++h
  EGE27656.1 49 VVTGSDIKANAMTERLENLGVTVH 72
                799********************9 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 7.9
                 EEEEEEEEEES CS
      DUF211  72 ihSiDevvaGk 82 
                 ++ +D ++ G+
  EGE27656.1 262 VQAVDVIADGT 272
                 44444444444 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00055
                 SSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE CS
      DUF211  13 hepsivelakklaelegvdgvnitvkevDketenlkitieGeni 56 
                 ++ +  +la++l e  +v+ + + v++  + t+ lkit++ +++
  EGE27656.1 419 KGATSNDLARSLRERGQVEPIVLNVNDKEQITQVLKITLNANDL 462
                 3467789*********************************9987 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.7e-05     0.038       2      67 ..      40     108 ..      39     117 .. 0.76
   2 ?   -1.5   0.0      0.46     1e+03       1      32 [.     426     457 ..     426     465 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                 HHHHHHTT--SEEEEE-SSHHHHHHH.HHTTSSSEEES-GGGGCCGSEEEE-S-GGG....HHHHHHHHHH CS
         PDH   2 aralrrkgfkvtvigydideekaeaa.lelglvdeatddieavkeadivvlavPvev....ilevlkelap 67 
                 a  l ++g    v+g di+++++ +  ++lg+  ++ +d +++k ad+vv+++ ++     i+  lk+++p
  EGE27656.1  40 AEVLANQG--YVVTGSDIKANAMTERlENLGVTVHVGHDASNIKMADVVVVSSAIDRqnpeIRAALKAHIP 108
                 77788888..899*****99887665168************************998622224445555555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.46
                 HHHHHHHTT--SEEEEE-SSHHHHHHHHHTTS CS
         PDH   1 laralrrkgfkvtvigydideekaeaalelgl 32 
                 lar+lr++g    +++  +d+e++ + l++ l
  EGE27656.1 426 LARSLRERGQVEPIVLNVNDKEQITQVLKITL 457
                 6999*****99989887777776666544433 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   4.1e-05     0.092       2      60 ..      29      85 ..      26     110 .. 0.79
   2 ?   -0.4   0.0      0.41   9.3e+02      60     113 ..     413     466 ..     387     482 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.1e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeev 60
                v++ GaG+   gia+v+a++g+ V+  di+++a+++ le++  +++  + + ++k ++v
  EGE27656.1 29 VGIGGAGMC--GIAEVLANQGYVVTGSDIKANAMTERLENLGVTVHVGHDASNIKMADV 85
                566777776..6************************99999887777776666665555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.41
                 HCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE- CS
     3HCDH_N  60 veaalarisfttdleeavdadlviEavvEnlelKrkvfaelekiakpdailasn 113
                 + + l +  +++dl++  +    +E +v n++ K+++ + l+ +++++ +l ++
  EGE27656.1 413 AGEELIKGATSNDLARSLRERGQVEPIVLNVNDKEQITQVLKITLNANDLLMTQ 466
                 555666777888888888888889999999999999999999999998888886 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0021       4.8       4      81 ..      33     103 ..      30     114 .. 0.71
   2 ?    1.9   0.0      0.16   3.6e+02      54      82 ..     337     365 ..     303     373 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0021
                      T-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEE.TTEECCCTSS-TT-EEEEEEES-CCC-.CCHHHHH CS
  Methyltransf_11   4 GcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvef.vvadaeklpfednsfDlvvssevlhhv.edpekal 81 
                      G+G   +ae la++g+ v+g D+ ++++    e+ ++ g  v++ v  da+++++     D+vv+s++++   ++ ++al
       EGE27656.1  33 GAGMCGIAEVLANQGYVVTGSDIKANAM---TERLENLG--VTVhVGHDASNIKM----ADVVVVSSAIDRQnPEIRAAL 103
                      778888999**************99888...45555555..33306667777655....458888888776655565555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.16
                      CTSS-TT-EEEEEEES-CCC-CCHHHHHH CS
  Methyltransf_11  54 klpfednsfDlvvssevlhhvedpekalk 82 
                      + p+ d+s D+v++    hh  + + ++k
       EGE27656.1 337 SYPLTDGSGDVVLIDDYGHHPTEIAMTIK 365
                      579**********9999999776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 3915.21
//
Query:       EGE27657.1  [L=333]
Description: D-alanine--D-alanine ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-54  183.0   0.0      6e-54  182.7   0.0    1.1  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
      2e-19   70.0   0.9    2.5e-17   63.2   0.9    2.4  1  Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
    2.8e-06   27.0   0.0    1.3e-05   24.8   0.0    1.8  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    3.2e-06   26.8   0.0    1.6e-05   24.5   0.0    1.9  1  ATP-grasp_4      ATP-grasp domain
      1e-05   25.2   0.0    1.7e-05   24.5   0.0    1.3  1  ATP-grasp        ATP-grasp domain
  ------ inclusion threshold ------
      0.025   14.6   0.0       0.05   13.7   0.0    1.5  1  ATP-grasp_3      ATP-grasp domain


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.7   0.0     2e-57     6e-54       1     203 [.     137     329 ..     137     330 .. 0.97

  Alignments for each domain:
  == domain 1  score: 182.7 bits;  conditional E-value: 2e-57
                      HHHHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--ESEEEEEEEEETS CS
  Dala_Dala_lig_C   1 llkaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeaiegreievavlgne 94 
                      l++++Glp+vpyvvl+ ++  +       +ve e+g+p+fVKpa eGSSvGv  ve++ +l++   +  +y  ++l E+a+ g e  + +lg  
       EGE27657.1 137 LWQSLGLPNVPYVVLHDDSDFS-------AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDLAKIYPKLKQYHGEILAEKAMMGGEYAIPLLG-- 221
                      89************98876655.......569************************************************************.. PP

                      SCEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS---STTSHHHHHH CS
  Dala_Dala_lig_C  95 klevsevgeivvkkgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlPGfTeiSlfpkla 188
                        +v++ ++i++k++fydyeaky  d++ +++p +l++e+e+++ elalka++a+++rG++RvDf+  ++g++++ E+Nt+PG+T++Sl+p++a
       EGE27657.1 222 -EQVLPSIRIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAIGGRGWSRVDFLKGHDGKLYVLEINTVPGMTDHSLVPMAA 314
                      .9*********************99********************************************************************* PP

                      HCTT--HHHHHHHHH CS
  Dala_Dala_lig_C 189 kasGlefkkLvdqli 203
                      k++G+ f++L  q++
       EGE27657.1 315 KEAGIGFDELCLQIL 329
                      **********98886 PP

>> Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.9   8.3e-21   2.5e-17       1     103 []      40     120 ..      40     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 8.3e-21
                      EEEEEEE-SSTTHHHHHHHHHHHHHHCHCCTEEEEEEEE-TTS-EHHHHHHHHTTHHHTCCCCHCCCTCE--SEEEEE-TTTTTTSSHHHHHHH CS
  Dala_Dala_lig_N   1 kiavlfGGkStEhevSlvsaksvlkaldkekyeviligitkegkwkkkaekleskekkklkkeeekekkaeldvvfpvlhGkngEDGtlqglle 94 
                      k+av++GG+StE+evSl s+++vl+al ++ +++  ++ +                       +++++ ++ d vf+vlhG++gEDG+lqg+l+
       EGE27657.1  40 KVAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPAD----------------------TDISHLRAYDRVFNVLHGTFGEDGSLQGVLD 111
                      79*************************44334443333333......................45677899*********************** PP

                      HTT--BSS- CS
  Dala_Dala_lig_N  95 llgipyvGs 103
                       +++py+G+
       EGE27657.1 112 GFNLPYTGC 120
                      ********9 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.3e-09   1.3e-05       4     178 ..     133     300 ..     130     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 4.3e-09
                  HHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEE CS
  CPSase_L_D2   4 sakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlr 101
                  + + + + ++ p vp +    ++  +  a+ +e+g P  +k+a+ +   G  ++++  +la+++ k  +         ++l ek + g  e+ + +l 
   EGE27657.1 133 RCRLLWQSLGLPNVPYVVL--HDDSDFSAVEREFGLPLFVKPAAEGSSVGVFMVEQAGDLAKIYPKLKQYH------GEILAEKAMMGG-EYAIPLLG 221
                  5556666677777776666..8889999999*********************************9988877......79*******985.89999*** PP

                  ETTS-EEEEEEEEECCEC....TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEES CS
  CPSase_L_D2 102 Dakgnvitvcerenslql....rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNt 178
                   +    i +  +  +         ++ i   Ps  Lt+e+ ++++e a+k+ r++g +g   v+fl  + +++ yv+E+Nt
   EGE27657.1 222 EQVLPSIRIIPKGKFYDYeakyLRDDTIYQCPSD-LTPEQERQMGELALKAFRAIGGRGWSRVDFLKGH-DGKLYVLEINT 300
                  ***9999999998887766656789********8.667777779*********************9997.9*********8 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.4e-09   1.6e-05       2     151 ..     165     301 ..     164     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 5.4e-09
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilnilkkefaseed...vsd 96 
                   lP+ +KP+ + +S+GV +++++ ++ + + ++++        y+      +++l E+ + G E+a+ ++  e+  p i  i k +f++ e+     d
   EGE27657.1 165 GLPLFVKPAAEGSSVGVFMVEQAGDLAKIYPKLKQ--------YH------GEILAEKAMMGGEYAIPLLG-EQVLPSIRIIPKGKFYDYEAkylRDD 247
                  57999**********************98888883........43......6899************9887.777*********99987655443468 PP

  ATP-grasp_4  97 rlyvtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnpl 151
                  ++y  +++++ e+++++ el  ++ +++g + + + + +   +dgk++++E+n +
   EGE27657.1 248 TIYQCPSDLTPEQERQMGELALKAFRAIGGR-GWSRVDFLKGHDGKLYVLEINTV 301
                  99***************99999999999965.67889999999999999999975 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   5.6e-09   1.7e-05       2     157 ..     139     299 ..     137     307 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 5.6e-09
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC.........GTTCEEEEE----SEEEEEEEEE.ETTC-E CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal.........keekvivEefvpfekElsvlvvr.saeGet 90 
                 ++lglp  ++++++++++++++ +e+glp+ vK +  g++  G ++v+++ dl ++   l         ++  +  E  +p+  E  +  +r   +G  
  EGE27657.1 139 QSLGLPNVPYVVLHDDSDFSAVEREFGLPLFVKPAAEGSS-VGVFMVEQAGDLAKIYPKLkqyhgeilaEKAMMGGEYAIPLLGEQVLPSIRiIPKG-- 234
                 6899*****************************7777766.8**********999988877756666543444445668999999999999977789.. PP

                 EE--EEEEEEETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEE CS
   ATP-grasp  91 afypvvetvqedgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnEla 157
                 +fy+   ++ +d+++ ++  p++++ +++++  e+a k+ +++gg G   v +   +dg+l+v E+ 
  EGE27657.1 235 KFYDYEAKYLRDDTIYQC--PSDLTPEQERQMGELALKAFRAIGGRGWSRVDFLKGHDGKLYVLEIN 299
                 777777777666665554..788999**********************************9999985 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05      0.05      33     156 ..     167     300 ..     130     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
                  SEEEEESS-------B--SS--TTE.............EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET.........TEEEEEEES----HHHH CS
  ATP-grasp_3  33 klvvKprdGaggesvrvveekeeaeaaieeve......lvqefieGkplSvsllsdgekvlvlavnrqliekaeke.....fvyaGnvtpietelkee 119
                  +l vKp+  + + +v++ve+  ++ ++ ++++      l+ + + G ++ + ll+++   ++  +++      e +      +y+ + ++   e++++
   EGE27657.1 167 PLFVKPAAEGSSVGVFMVEQAGDLAKIYPKLKqyhgeiLAEKAMMGGEYAIPLLGEQVLPSIRIIPKGKFYDYEAKylrddTIYQ-CPSDLTPEQERQ 263
                  5678999888899999999998888888888788899888999999999999999887777777777665555555566766666.445555578999 PP

                  HHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEES CS
  ATP-grasp_3 120 vvelaeevvekleglaGyvGvDlvlkd.eepyviEvNP 156
                  + ela ++ +++ g +G   vD++    +++yv+E+N 
   EGE27657.1 264 MGELALKAFRAI-GGRGWSRVDFLKGHdGKLYVLEINT 300
                  ************.***********65449********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2809.86
//
Query:       EGE27658.1  [L=237]
Description: hypothetical protein EA1_01436 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-37  128.6   3.2    1.8e-36  126.2   3.2    1.9  1  DUF45      Protein of unknown function DUF45
    6.8e-05   23.0   1.3    0.00011   22.3   1.3    1.3  1  WLM        WLM domain
    0.00011   22.0   0.2     0.0002   21.2   0.2    1.4  1  SprT-like  SprT-like family


Domain annotation for each model (and alignments):
>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   3.2     3e-40   1.8e-36       1     205 [.      48     237 .]      48     237 .] 0.91

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 3e-40
       DUF45   1 knlrlrvepdgsvevsaPkgvseeeiedfvkkkakwiekklakleerakeaekelesgesfpllGkkyrlkvekgkeasvklkreelelavkkeeeeek 99 
                 k+l++r  + ++++vs+P +++e+ + d ++ k  w  +++  l           e+  +  l+G+++ +    +        +++l   ++   ++  
  EGE27658.1  48 KHLNFRLTQ-STLKVSVPSDIDEQVLVDGIYAKIPWAIRSYHALMI---------EKPYYDTLWGERLDVANWLNI------HQANLPCRTLGYLKKLP 130
                 678999999.99****************************999999.........555566678988777766666......66667777777788888 PP

       DUF45 100 lrkaleewlrkeakeeleerlaklaaklgvkprsvsikdmktrWGsc.sskgkirlnwrLvkappevidYVvvHElaHlleknHskrFwalvekllPdw 197
                 +++ +  ++r e+k++l+++l+++++k+g k++++++++m++rWGsc +   ki+ln++L+  p  ++ YV+vHEl+Hl ++nHs++Fw+ ve+ +Pd+
  EGE27658.1 131 KQALITWIYRYEIKQQLPSLLSQWQPKVGKKAAAIRLRQMSSRWGSCnTLSAKITLNTHLASYPLGCLAYVLVHELCHLYHANHSANFWKSVENAMPDY 229
                 88889999***************************************999************************************************* PP

       DUF45 198 keakkeLk 205
                 k +++ Lk
  EGE27658.1 230 KYWHDLLK 237
                 *9999886 PP

>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   1.3   1.9e-08   0.00011      81     109 ..     196     224 ..     184     233 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.9e-08
         WLM  81 esimgtllHELaHnvygpHdakFyallke 109
                   +  +l+HEL+H  +++H a+F++ +++
  EGE27658.1 196 GCLAYVLVHELCHLYHANHSANFWKSVEN 224
                 567789******************98765 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   3.4e-08    0.0002      21      78 ..     163     212 ..     140     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.4e-08
   SprT-like  21 vkiiwskrlnttaGranlkratvrhhasIeLseklldsrsedrllntLaHElcHlalf 78 
                   i+ + ++++  G +n+ +      a+I+L+++l  + +   l  +L+HElcHl+  
  EGE27658.1 163 AAIRLR-QMSSRWGSCNTLS------AKITLNTHLASY-PLGCLAYVLVHELCHLYHA 212
                 333333.6788888888888......********9998.****************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2010.11
//
Query:       EGE27659.1  [L=300]
Description: LysR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-35  120.7   0.1    6.8e-35  120.3   0.1    1.2  1  LysR_substrate  LysR substrate binding domain
    5.7e-17   61.4   0.2    1.2e-16   60.4   0.2    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.1   7.6e-39   6.8e-35       8     208 ..      94     293 ..      89     294 .. 0.96

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 7.6e-39
                     EEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGGC CS
  LysR_substrate   8 LrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsledLa 102
                      +ig++pt+a+yllp++l+ +++++P+ el++ve+++e+l+++++ g++D ai+a+p + +gl+a +++ e +++++s++ +  + ++++ +dL 
      EGE27659.1  94 MTIGIIPTIAPYLLPKVLPTLKRLHPHFELSVVEKQTERLIEQVRYGHIDTAIIALPYPLDGLHAFEFWAEDFFAILSENDEHIHTDKINSDDLS 188
                     58****************************************************************************998777799******** PP

                     TSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCHHHH CS
  LysR_substrate 103 deplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrelspav 197
                     + +l+ll eg++l d+++ +++ ++ +++ +++  sl++l+++ +aG+G +l+p++a+ + + +  + a+pl+ep ++r+l++++r +  +   v
      EGE27659.1 189 KTNLLLLGEGHCLTDQVLSVCALSKSEIQSSFSDASLNTLIQMSLAGMGTTLVPKMAL-EQIGEKTVHAIPLAEPGPHRRLAFITRLNYARVNDV 282
                     **********************************************************.66*************9999**********9999999 PP

                     HHHHHHHHHHH CS
  LysR_substrate 198 rafidflreal 208
                     r + +++ +al
      EGE27659.1 283 RLLSEIFGQAL 293
                     99999887765 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.2   1.3e-20   1.2e-16       1      60 []       4      63 ..       4      63 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.3e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lrql+  +ava++++f rAAee+++sq+a+s  i++LE++l++++feR+++++  T+ Ge
  EGE27659.1  4 LRQLEFALAVAKHRHFKRAAEECNISQSALSLGIAELEKQLDTQIFERNNKQVLITPIGE 63
                79*******************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2594.35
//
Query:       EGE27660.1  [L=188]
Description: alkyl hydroperoxide reductase subunit C [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-35  120.6   0.0      5e-35  120.1   0.0    1.2  1  AhpC-TSA    AhpC/TSA family
    3.8e-14   52.6   0.0    5.1e-14   52.2   0.0    1.1  1  Redoxin     Redoxin
    0.00029   20.8   0.0     0.0011   18.9   0.0    1.8  2  SCO1-SenC   SCO1/SenC
    0.00059   19.6   0.1     0.0012   18.6   0.1    1.5  1  1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.0   1.1e-38     5e-35       1     122 [.       5     133 ..       5     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 1.1e-38
                 TTSB----EEE...STTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.....SSEEEE-TTS CS
    AhpC-TSA   1 vgdkapdfelk...nadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes....lnfpllsDeeg 92 
                 +++ +p+f+ +   n++++t++ +d+kg++++++fyp+d+++vC+tel+++a++yee+k +gvev++vs+d+++ hk+++++      +++p+l D +g
  EGE27660.1   5 INQTIPEFSTQayvNGEFKTITSDDVKGSWAIFMFYPHDFTFVCPTELEDMAAHYEELKGLGVEVYAVSTDTHFVHKAWHDASPaigkVQYPMLGDGTG 103
                 68999******************************************************************************9*************** PP

                 HHHHHTT-EETTTTECSCEEEEE-TTSBEE CS
    AhpC-TSA  93 kvakaygvlkeekglalratfvidkegkir 122
                 k+ + ++v+ ee ++alr+tf++d++g+i+
  EGE27660.1 104 KITRGFNVMIEEDNAALRGTFLVDPDGVIK 133
                 *****************************8 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   1.1e-17   5.1e-14       3     134 ..       6     139 ..       5     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.1e-17
                 TSBB---E.CCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.....TT-TSEEEE-TTS CS
     Redoxin   3 gdkaPdft.lplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk.....eglkfpvlsDgsa 95 
                 ++++P+f+  + ++ + ++++ +++kg  ++  f+p  f+ +C +e+ +++  +e+lk  gv+v av++d+  fv ++w +      ++++p+l Dg++
  EGE27660.1   6 NQTIPEFStQAYVNGEFKTITSDDVKGSWAIFMFYPHDFTFVCPTELEDMAAHYEELKGLGVEVYAVSTDT-HFVHKAWHDaspaiGKVQYPMLGDGTG 103
                 578999996445789999999999************************999999999*******8888876.69************99*********** PP

                 HHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESS CS
     Redoxin  96 aftkalGlrleedaseglrtpryavidedgkvvylevep 134
                 ++t+ +++ +eed++   +++ ++++d dg+++  e ++
  EGE27660.1 104 KITRGFNVMIEEDNA---ALRGTFLVDPDGVIKVAEIHD 139
                 *********999966...8*************9888776 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.4e-07    0.0011       7      64 ..      18      73 ..      13      78 .. 0.77
   2 ?   -1.7   0.0      0.56   2.5e+03      17      43 ..     147     173 ..     140     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.4e-07
   SCO1-SenC  7 vdqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiT 64
                v+ + +++t++d++g++ ++ f     + vCpt+l++ma+ +++l+  +  v+++ ++
  EGE27660.1 18 VNGEFKTITSDDVKGSWAIFMFYPHDFTFVCPTELEDMAAHYEELKGLG--VEVYAVS 73
                7778899********98766555555577****************9874..4445555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.56
   SCO1-SenC  17 edlegkpslvffgFthCpdvCpttlan 43 
                 +d+  k+ +++++  +  +vCp++ + 
  EGE27660.1 147 KDMVRKVKAAQYVRDNDGEVCPAAWEA 173
                 555556666666666777899987765 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   2.7e-07    0.0012       3      31 ..     157     183 ..     155     187 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.7e-07
                 HHHHHH.T-BB-TTT.TBT-EEE---SSHH CS
  1-cysPrx_C   3 Qladkh.gvatPAnWkpGdkvivpPpatee 31 
                 Q++  + g+++PA W  G++++   +++ +
  EGE27660.1 157 QYVRDNdGEVCPAAWEAGQETL---KPSLD 183
                 7777777***************...99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1646.51
//
Query:       EGE27661.1  [L=70]
Description: hypothetical protein EA1_01451 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 620.41
//
Query:       EGE27662.1  [L=77]
Description: hypothetical protein EA1_01456 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-13   49.4   2.6    3.5e-13   49.4   2.6    2.0  2  DUF465    Protein of unknown function (DUF465)


Domain annotation for each model (and alignments):
>> DUF465  Protein of unknown function (DUF465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.025   4.4e+02       7      18 ..       4      15 ..       2      19 .. 0.75
   2 !   49.4   2.6   1.9e-17   3.5e-13       1      45 [.      20      67 ..      20      69 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.025
                HHHHHHHHHHHH CS
      DUF465  7 eHeeLdkeIhal 18
                e++eL  +++a+
  EGE27662.1  4 EYRELMTKLKAE 15
                899998888877 PP

  == domain 2  score: 49.4 bits;  conditional E-value: 1.9e-17
                HHHHHHHHHHHHHHHHHHHTT-....S-HHHHHHHHHHHHHHHHHHHH CS
      DUF465  1 FakLeeeHeeLdkeIhalearpv...tddleierLKkeKLeLKDeIyr 45
                F kL++eH+ Ld +I++ e++pv     ++ei ++K++KL+LKD++  
  EGE27662.1 20 FLKLFDEHNNLDTQIDNFEKDPVtsaSRAQEIDEMKHKKLHLKDQLKT 67
                779**********************999*****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1191  (0.0664287); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 595.67
//
Query:       EGE27663.1  [L=518]
Description: alkyl hydroperoxide reductase subunit F [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-41  140.0   7.8    1.3e-40  139.5   7.8    1.2  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.1e-22   78.5   0.8    6.1e-17   61.8   0.1    2.4  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    2.4e-15   56.8   9.8      1e-11   45.2   0.5    3.6  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    6.8e-11   42.1   0.3    5.9e-10   39.1   0.0    2.7  3  Thioredoxin_3   Thioredoxin domain
    1.3e-10   41.0   8.0    2.5e-06   26.8   0.8    3.3  3  GIDA            Glucose inhibited division protein A
    4.8e-10   38.7   8.7     0.0037   16.0   1.3    3.3  3  HI0933_like     HI0933-like protein
    6.6e-07   29.2  14.5     0.0066   16.1   2.2    3.2  3  DAO             FAD dependent oxidoreductase
    8.6e-07   28.4   0.6    0.00058   19.2   0.1    2.6  2  Thi4            Thi4 family
      1e-06   28.1  18.2    0.00056   19.1   3.3    4.5  5  FAD_binding_2   FAD binding domain
    2.8e-06   27.0   3.5    2.8e-06   27.0   3.5    2.7  3  FAD_oxidored    FAD dependent oxidoreductase
    4.9e-06   26.9   1.1      0.075   13.5   0.1    2.7  2  NAD_binding_7   Putative NAD(P)-binding
    4.6e-05   22.8   3.6      0.014   14.7   0.3    2.4  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    5.8e-05   23.2   5.9    0.00042   20.5   0.8    3.2  3  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00065   19.7   4.0      0.048   13.6   0.1    3.4  3  NAD_binding_9   FAD-NAD(P)-binding
     0.0022   17.2   0.4       0.13   11.4   0.1    3.1  4  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
      0.008   15.5   9.5      0.012   14.9   0.4    3.1  3  FAD_binding_3   FAD binding domain
  ------ inclusion threshold ------
      0.011   15.9   1.0       0.06   13.6   0.0    2.7  2  Glutaredoxin    Glutaredoxin
      0.022   13.8   7.0        0.2   10.7   0.8    2.5  3  Lycopene_cycl   Lycopene cyclase protein
      0.034   14.1   0.4        1.2    9.1   0.0    2.5  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
       0.04   14.0   0.9        1.1    9.3   0.1    3.0  3  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.047   13.6   2.8       0.17   11.7   0.2    2.3  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.15   11.8   0.0        0.4   10.4   0.0    1.7  1  DSBA            DSBA-like thioredoxin domain
       0.23   11.8   1.7        1.2    9.4   0.2    2.3  2  zinc_ribbon_9   zinc-ribbon
       0.66    8.8   4.8        2.9    6.6   1.2    2.3  2  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   7.8   1.7e-43   1.3e-40       2     294 .]     216     503 ..     215     503 .. 0.85

  Alignments for each domain:
  == domain 1  score: 139.5 bits;  conditional E-value: 1.7e-43
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH........HHHHCHHHHCCCCHCCT.CEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias........evvkklnqgielllgee.vvkidpgkkkvklekk 90 
                  dv viGgGpAG+aaa++ a++g++v++v +++   +g++  ++ +++  + + +           ++k++n  ++    ++   ++d g  +v+l   
   EGE27663.1 216 DVTVIGGGPAGTAAAIYTARKGLRVAIV-ADR--IGGQVKDTQDIENLISIPLTNGntlaanlaTHIKEYNITVKEHVSVSkLEEVDGGY-QVTL--- 306
                  89**************************.444..66666666666666666644446666888899999999999999977344455555.8888... PP

                  ECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  91 kegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaa 188
                    + + +    +++lAtG++ r+lg++G+ en g +v ++ ++++   k ++  ++v+GgG+ GvE A  la +  +vt++e +d l       + + 
   EGE27663.1 307 --STGASWLSRTVILATGAKWRKLGVKGEDENIGNGVAYCPHCDGPFFKGKD--VAVIGGGNSGVEAALDLAGIVNHVTVLEFGDSLR------ADQV 394
                  ..567799****************************************9998..*********************************7......6677 PP

                  HHHHHHHT.TEEEEESCEEEEEEETTE....EEE...EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxx....xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 189 leealeke.Gvevklgtsvkeidgnge....kle...vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva 278
                  l ++ e++ ++++   +  +ei+ +g+           v ++ ++++ + v+v +G+ p++e++  k  ++++++g i++d ++rt+  gi+a+GDv+
   EGE27663.1 395 LIDKAEAReNITIIKSAATTEITTDGSkvnaL-IyqdRVSGNSQTLPLSAVFVQIGLVPNSEIA--KGLVTMTPQGEIEIDAKCRTSKVGIFACGDVT 489
                  7776766669*****************65541.144577777788****************995..99****************************** PP

                  TECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 279 ggkggpelaqaAvqqG 294
                    +  ++++  A+ +G
   EGE27663.1 490 --TVPYKQINIAMGEG 503
                  ..77777777777766 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.4e-05      0.01     149     196 ..     200     246 ..     182     262 .. 0.73
   2 !   61.8   0.1   8.1e-20   6.1e-17      78     305 .]     266     486 ..     250     486 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-05
  Pyr_redox_3 149 lvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrg 196
                  ++   +  +e+ ++++q+v+ViGg+  +  aA+ ++rkg +V +v ++
   EGE27663.1 200 YPNLLASANEV-QLETQDVTVIGGGPAGTAAAIYTARKGLRVAIVADR 246
                  66666666777.788999999999999999999999999999988665 PP

  == domain 2  score: 61.8 bits;  conditional E-value: 8.1e-20
  Pyr_redox_3  78 lsrkealeYlrevaksfelpiklfeeVesvkkedegfevetske.tyeAkkviiAtGefdkPnklnipGeek.lvkhyskvkefh..kyagqkvvViG 171
                   ++++++  l++  k++++ +k++ +V ++++ d+g++v+ s++ +  +++vi+AtG   k +kl+++Ge++      ++ ++++   ++g++v+ViG
   EGE27663.1 266 TNGNTLAANLATHIKEYNITVKEHVSVSKLEEVDGGYQVTLSTGaSWLSRTVILATGA--KWRKLGVKGEDEnIGNGVAYCPHCDgpFFKGKDVAVIG 361
                  56788889999999**************************9998799**********9..99*********7545555566655421478******** PP

  Pyr_redox_3 172 gknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk....tedgkkvevkddvvla. 264
                  g+nS+v+aAl+l+   ++Vtv+  g+++++++              ++++ ++e+i++++ a ++ei+++ ++++        +g++ +     v++ 
   EGE27663.1 362 GGNSGVEAALDLAGIVNHVTVLEFGDSLRADQ------------VLIDKAEARENITIIKSAATTEITTDGSKVNALiyqdRVSGNSQTLPLSAVFVq 447
                  *************************9777764............234444455668888888888888887777544222223344444455555555 PP

  Pyr_redox_3 265 tGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                  +G  p+ ++ k  l++ + +g+++++ +       g+f +G
   EGE27663.1 448 IGLVPNSEIAK-GLVTMTPQGEIEIDAKCRT-SKVGIFACG 486
                  99999988887.8888888888888876544.445777776 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   3.1     0.002       1.5       2      78 ..     217     306 ..     216     309 .. 0.65
   2 !   45.2   0.5   1.3e-14     1e-11       2      78 ..     357     428 ..     356     431 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.002
                 EEEECSSHHHHHHHHHHHHTT..............SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelg..............kkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvkl 78 
                 v+v+GgG  g  +A + a+ g              k+++ +e+   +    +++++++l++++++ +i+v  + +v ++e+ + g ++v+l
  EGE27663.1 217 VTVIGGGPAGTAAAIYTARKGlrvaivadriggqvKDTQDIENLISIPLTNGNTLAANLATHIKEYNITVKEHVSVSKLEEVDGG-YQVTL 306
                 789***********99988883333333333344444444555555555666777777777777777777777777777776665.55665 PP

  == domain 2  score: 45.2 bits;  conditional E-value: 1.3e-14
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsedgvesvkl 78 
                 v+v+GgG++g+E+A  la + ++Vtv+e +d l+      a ++l +k e++ +i+++ ++ ++ei++++++v+++  
  EGE27663.1 357 VAVIGGGNSGVEAALDLAGIVNHVTVLEFGDSLR------ADQVLIDKAEAReNITIIKSAATTEITTDGSKVNALIY 428
                 89********************************......*********9999*****************99887665 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   7.9e-13   5.9e-10       6      74 ..     126     196 ..     120     198 .. 0.90
   2 ?   -2.6   0.0       8.1   6.1e+03      62      75 ..     248     261 ..     241     262 .. 0.77
   3 ?   -1.3   0.0       3.2   2.4e+03      14      47 ..     269     304 ..     266     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 7.9e-13
                    ESSSSTTCH.HHHHHHHHHCHCCTCECEEECCTTHHHH.HHCT-SSSSEEECTTCEEEESS---CCHHHHH CS
  Thioredoxin_3   6 lgpgCakCp.klekavkeaaaekgikaevekvtdfeei.ekygVmsvPalvidgkvvvsGkvpseeeirkl 74 
                    ++ +C++Cp  ++++ + a+ ++ i+ e+++   f+e+ ++ +++ vPa++++gk  + Gkv + + i+kl
     EGE27663.1 126 VSLSCHNCPdVVQALNQFAILNDHIENEMIDGGVFPELvAEKKIQGVPAVFLNGKPFANGKVDTAKLIEKL 196
                    7899*****777777788888889**************************************999999997 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.1
                    ESS---CCHHHHHH CS
  Thioredoxin_3  62 sGkvpseeeirkll 75 
                     G+v+++++i++l+
     EGE27663.1 248 GGQVKDTQDIENLI 261
                    58888888888876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.2
                    HHHHHHHHHHCHCCTCEC.EEECCTTHHHH.HHCT- CS
  Thioredoxin_3  14 pklekavkeaaaekgika.evekvtdfeei.ekygV 47 
                    ++l+++++  ++e +i++ e + v+++ee+   y+V
     EGE27663.1 269 NTLAANLATHIKEYNITVkEHVSVSKLEEVdGGYQV 304
                    678889999999999999877788888887666766 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.8   3.3e-09   2.5e-06       1      35 [.     216     260 ..     216     271 .. 0.81
   2 ?    3.3   0.1     0.048        36     105     150 ..     279     323 ..     266     340 .. 0.73
   3 !   13.9   0.1   2.8e-05     0.021       1      27 [.     356     382 ..     356     432 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.3e-09
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE..........ES-GGGT CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi..........thkldti 35 
                 dv+ViGgG AG++AA+ +ar+G++v+++          t++++++
  EGE27663.1 216 DVTVIGGGPAGTAAAIYTARKGLRVAIVadriggqvkdTQDIENL 260
                 79**************************77777775555555554 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.048
                 HHTSTTEEEEES.-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 105 lenepnleiiee.eveeliveekkvkgvvtedgetikakavviatGt 150
                 +++  n+++ e  +v++l  e +    v++++g+   +++v++atG+
  EGE27663.1 279 IKE-YNITVKEHvSVSKL-EEVDGGYQVTLSTGASWLSRTVILATGA 323
                 555.78888776346666.33455556*******************9 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 2.8e-05
                 CEEEE-SSHHHHHHHHHHHHTT--EEE CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlL 27 
                 dv ViGgG +G+eAAl +a    +v+ 
  EGE27663.1 356 DVAVIGGGNSGVEAALDLAGIVNHVTV 382
                 79***************9987666665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.3     5e-06    0.0037       2      29 ..     216     243 ..     215     250 .. 0.92
   2 !   14.9   0.1   1.1e-05    0.0083     109     174 ..     269     332 ..     264     340 .. 0.85
   3 !   11.1   0.1   0.00015      0.12       2      34 ..     356     388 ..     355     406 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlll 29 
                  dv viGgG+AG  aAi  a++g rV+++
   EGE27663.1 216 DVTVIGGGPAGTAAAIYTARKGLRVAIV 243
                  89***********************987 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.1e-05
                  HHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGGT--S CS
  HI0933_like 109 edivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiPklGstg 174
                  +++   l +++ke +++++ + +v+++e+ ++g ++v+++++ ++ +++++lAtG + + klG +g
   EGE27663.1 269 NTLAANLATHIKEYNITVKEHVSVSKLEEVDGG-YQVTLSTGASWLSRTVILATGAK-WRKLGVKG 332
                  567778999******************887666.*******************9865.88888766 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00015
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34 
                  dv+viGgG +G+ aA+ +a   ++V++le +++
   EGE27663.1 356 DVAVIGGGNSGVEAALDLAGIVNHVTVLEFGDS 388
                  8***************************98766 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   2.2   8.9e-06    0.0066       1      33 [.     216     249 ..     216     255 .. 0.90
   2 !    8.9   0.2    0.0013         1     147     205 ..     270     326 ..     265     341 .. 0.79
   3 !   11.8   0.7   0.00018      0.13       1      29 [.     356     386 ..     356     392 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.9e-06
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33 
                 dv +iGGG +G ++A + ar+g  V+++  + i g
  EGE27663.1 216 DVTVIGGGPAGTAAAIYTARKGlrVAIVADR-IGG 249
                 89*************************9988.544 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE.EEEEEEEE--GGGHH CS
         DAO 147 kltaalaraaealGveilegtevtgleeedgkvwgverttp.gen.daadavVnaaGawsd 205
                  l+a la  +++  +++ e+  v +lee dg+ ++v  t + g+   + ++v++a+Ga  +
  EGE27663.1 270 TLAANLATHIKEYNITVKEHVSVSKLEEVDGG-YQV--TLStGASwLS-RTVILATGAKWR 326
                 578899999*****************997755.777..4444887668.99******9855 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00018
                 EEEEECTSHHHHHHHHHHHHTT....EEEEESS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg....Vtllekg 29 
                 dv++iGGG  G+ +A++La  g    Vt+le g
  EGE27663.1 356 DVAVIGGGNSGVEAALDLA--GivnhVTVLEFG 386
                 8*****************4..55568****966 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   7.8e-07   0.00058      14      51 ..     211     247 ..     189     254 .. 0.90
   2 !    6.9   0.1    0.0043       3.2      17      39 ..     354     376 ..     350     389 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.8e-07
                 HHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSS CS
        Thi4  14 kyaesDvvivGaGssGLtaayylakkpdlkvailersv 51 
                 ++  +Dv ++G+G++G +aa y a+k +l+vai+  ++
  EGE27663.1 211 QLETQDVTVIGGGPAGTAAAIYTARK-GLRVAIVADRI 247
                 56678*********************.******98775 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0043
                 EEEEEEE--SHHHHHHHHHHHHC CS
        Thi4  17 esDvvivGaGssGLtaayylakk 39 
                   Dv+++G+G sG+ aa  la  
  EGE27663.1 354 GKDVAVIGGGNSGVEAALDLAGI 376
                 57***************999876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   3.3   7.5e-07   0.00056       1      29 [.     216     244 ..     216     251 .. 0.95
   2 !    6.8   0.1    0.0042       3.1     135     201 ..     263     323 ..     245     351 .. 0.79
   3 !    7.2   2.2    0.0031       2.3       1      33 [.     356     388 ..     356     395 .. 0.88
   4 ?   -2.7   0.0       3.1   2.3e+03     146     189 ..     394     438 ..     392     464 .. 0.79
   5 ?    1.6   0.0      0.16   1.2e+02     376     410 ..     469     497 ..     460     503 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7.5e-07
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEE CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavve 29 
                    Dv ViG+G AG aAA+  a++Gl+va+v 
     EGE27663.1 216 DVTVIGGGPAGTAAAIYTARKGLRVAIVA 244
                    999************************96 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0042
                    ....HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE---- CS
  FAD_binding_2 135 etlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgG 201
                    ++l++g++l+a l+++++++++++ e+ ++ +L    ++v G +   +++g      ++ v+latg+
     EGE27663.1 263 IPLTNGNTLAANLATHIKEYNITVKEHVSVSKL----EEVDGGYQVTLSTGA--SWLSRTVILATGA 323
                    5689*****************************....778888877455554..5568889999986 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0031
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33 
                    Dv ViG+G +G  AAl +a     v+v+e +++
     EGE27663.1 356 DVAVIGGGNSGVEAALDLAGIVNHVTVLEFGDS 388
                    9*****************999889999987766 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 3.1
                    HHHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEE CS
  FAD_binding_2 146 rlvesarkag.vdfqerteadeLivedgrvtGavvenpesgrevr 189
                    +l+++a++++ +++  +++ +e+++++ +v+  + +++ sg+ ++
     EGE27663.1 394 VLIDKAEAREnITIIKSAATTEITTDGSKVNALIYQDRVSGNSQT 438
                    577888778789999999999999988899999888886666554 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.16
                    EEBETTSBESTTEEESSBTEEE-STCEESSSSTTS CS
  FAD_binding_2 376 vetdengrvldadgqpipGLYAaGevaaggvhgan 410
                    +e+d+++r+         G +A+G v+ + ++ +n
     EGE27663.1 469 IEIDAKCRT------SKVGIFACGDVTTVPYKQIN 497
                    789999999......999*********88888777 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   3.5   3.7e-09   2.8e-06       1      37 [.     216     250 ..     216     255 .. 0.91
   2 ?    4.6   2.6     0.023        17       1      19 [.     356     374 ..     356     389 .. 0.85
   3 ?   -1.5   0.0       1.6   1.2e+03      92     129 ..     394     432 ..     378     440 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3.7e-09
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGl 37 
                   Dv V+GGgpaG+aAAi  ar+G +v++v +  ++GG+
    EGE27663.1 216 DVTVIGGGPAGTAAAIYTARKGLRVAIVAD--RIGGQ 250
                   9***************************75..47776 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.023
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAa 19 
                   Dv V+GGg +Gv AA+  a
    EGE27663.1 356 DVAVIGGGNSGVEAALDLA 374
                   9**************9755 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.6
  FAD_oxidored  92 vleeml.aeagvtvllntrlvevekegkriesvtveske 129
                   vl +   a++++t++  +  +e++++g ++++++ +++ 
    EGE27663.1 394 VLIDKAeARENITIIKSAATTEITTDGSKVNALIYQDRV 432
                   3333335678****************9999999987765 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1    0.0001     0.075       3      46 ..     210     259 ..     209     324 .. 0.75
   2 !   11.5   0.1   0.00042      0.31       5      81 ..     352     430 ..     351     441 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.0001
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele......e 46 
                    ++l+++ v v+GgG+ ++  +   +++g +v +va ++  +++      +
     EGE27663.1 210 VQLETQDVTVIGGGPAGTAAAIYTARKGLRVAIVADRIGGQVKdtqdieN 259
                    6899*********************************9555552222322 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00042
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeelekd...legadlviaatddrelneriaea 81 
                    +kgk v v+GgG+ + + +  l+    +vtv+     +   ++v + + e++++   ++ a++  ++td  ++n+ i+++
     EGE27663.1 352 FKGKDVAVIGGGNSGVEAALDLAGIVNHVTVLEFG-DSLRADQVLIDKAEARENitiIKSAATTEITTDGSKVNALIYQD 430
                    689****************************9887.44555666666666654444488999999999999999999987 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   1.9e-05     0.014       9      61 ..     196     247 ..     189     290 .. 0.67
   2 !    8.7   0.3    0.0013      0.97      30      61 ..     356     387 ..     349     434 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.9e-05
                  CSCGCTSEEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C   9 lekffggkgtlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrp 61 
                  l+++ +     a  v+  e   v+viGgG aG++A+   ++ g +V ++  r+
   EGE27663.1 196 LQEQYPNLLASANEVQ-LETQDVTVIGGGPAGTAAAIYTARKGLRVAIVADRI 247
                  5666666777777788.88999***************9999999999875543 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0013
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrp 61 
                   v viGgG  G++A+   +g+  +Vtvl+   
   EGE27663.1 356 DVAVIGGGNSGVEAALDLAGIVNHVTVLEFGD 387
                  699************************98754 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.8   5.6e-07   0.00042       1      40 [.     219     256 ..     219     282 .. 0.86
   2 ?   -2.3   0.0       7.4   5.5e+03      33      33 ..     292     292 ..     266     316 .. 0.48
   3 ?    3.8   0.3     0.091        68       1      30 [.     359     388 ..     359     392 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.6e-07
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev 40 
                    ++G+G +G +aA + a++g++v ++  +dr+GG++++ ++
     EGE27663.1 219 VIGGGPAGTAAAIYTARKGLRVAIV--ADRIGGQVKDTQD 256
                    8************************..9******998766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.4
                    G CS
  NAD_binding_8  33 G 33 
                     
     EGE27663.1 292 V 292
                    1 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.091
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    ++G+G sG  aA  La    +v++le +d+
     EGE27663.1 359 VIGGGNSGVEAALDLAGIVNHVTVLEFGDS 388
                    8************99988889999997765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.068        51       2      19 ..     219     236 ..     218     263 .. 0.79
   2 !   13.6   0.1   6.4e-05     0.048     115     155 ..     282     323 ..     268     324 .. 0.77
   3 ?    2.0   0.1      0.24   1.8e+02       1      17 [.     358     374 ..     358     426 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.068
  NAD_binding_9   2 ivGaGprGlavlerLlar 19 
                    ++G+Gp+G+a++   +++
     EGE27663.1 219 VIGGGPAGTAAAIYTARK 236
                    8*********99877666 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.4e-05
  NAD_binding_9 115 vtvevhra.evvdleeradgqavlladgaslaadaVvLAlGh 155
                     +++v ++ +v +lee ++g++v+l++gas+  + V+LA+G 
     EGE27663.1 282 YNITVKEHvSVSKLEEVDGGYQVTLSTGASWLSRTVILATGA 323
                    344444333899****************************95 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.24
  NAD_binding_9   1 aivGaGprGlavlerLl 17 
                    a++G+G +G+ ++  L+
     EGE27663.1 358 AVIGGGNSGVEAALDLA 374
                    79********9999887 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.5   1.9e+03      92     126 ..      30      63 ..      15      76 .. 0.75
   2 ?    1.9   0.0      0.13        97     186     206 ..     209     229 ..     193     260 .. 0.76
   3 !   11.4   0.1   0.00017      0.13     133     217 ..     302     380 ..     271     390 .. 0.64
   4 ?   -2.3   0.0       2.6   1.9e+03     288     335 ..     398     445 ..     387     449 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.5
  K_oxygenase  92 lpsRkefedYlrWvasqleeqvrfgeeveevepde 126
                  +  R+e  d+l  +a   ++ ++f+++v + + + 
   EGE27663.1  30 HEKRAELIDFLTKIAGTTDK-IQFDAQVIDNRLSP 63 
                  55789999999999999998.99999997655554 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.13
  K_oxygenase 186 eellakkriaVvGsGqSaaei 206
                  e +l+ ++++V+G+G  +   
   EGE27663.1 209 EVQLETQDVTVIGGGPAGTAA 229
                  3488999********765433 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00017
  K_oxygenase 133 ltveskdaegeeeelearnlvlgvGtep.kiPevleklegkervvHsseylerkee.llakkriaVvGsGqSaaeifedllrrqkkv 217
                  ++v+      +  ++ +r+++l++G +  k+        ++e++     y  + +    ++k++aV+G+G S+ e + dl+   ++v
   EGE27663.1 302 YQVTL----STGASWLSRTVILATGAKWrKLGVKG----EDENIGNGVAYCPHCDGpFFKGKDVAVIGGGNSGVEAALDLAGIVNHV 380
                  55554....24556777777777775430332221....23555556666666655457899*****************99877665 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.6
  K_oxygenase 288 kvkgeerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavv 335
                  k + +e+++++++ + ++++ +g++   l ++++ sg+++tl   av+
   EGE27663.1 398 KAEARENITIIKSAATTEITTDGSKVNALIYQDRVSGNSQTLPLSAVF 445
                  556677899999999999999998888899999999998888777776 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   1.6e-05     0.012       3      31 ..     216     244 ..     214     255 .. 0.87
   2 ?    2.0   1.3      0.13        97       3      26 ..     356     378 ..     355     388 .. 0.80
   3 ?    2.4   0.0     0.098        74     107     153 ..     391     439 ..     386     446 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlve 31 
                    dV ++G+GpaG  +a   +++G rv +v 
     EGE27663.1 216 DVTVIGGGPAGTAAAIYTARKGLRVAIVA 244
                    8***********************99984 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.13
                    EEEEE--SHHHHHHHHHHHHTTHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvr 26 
                    dV+++G+G +G+ +al L+   v+
     EGE27663.1 356 DVAVIGGGNSGVEAALDLAGI-VN 378
                    8**************888755.44 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.098
                    HHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEE.ECCTTEEEEE CS
  FAD_binding_3 107 leriLvehaeerg.lqvrfktevesleqdeegvtaevr.dketgeeetv 153
                     +++L+++ae+r  +++ +++ ++ ++ d+++v+a ++ d+ +g+ +t+
     EGE27663.1 391 ADQVLIDKAEAREnITIIKSAATTEITTDGSKVNALIYqDRVSGNSQTL 439
                    6789*********9*********************98857778877775 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.1e-05      0.06       4      58 ..     125     180 ..     123     182 .. 0.91
   2 ?   -1.9   0.4       5.6   4.2e+03       7      12 ..     342     347 ..     340     348 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.1e-05
                   EESTSSHHHHHHHHHHHHTTGGEEEEEGCCSH.HHHHHHHHHHTSSSSSEEEETTE CS
  Glutaredoxin   4 ftkptCpyCkkakrlLkelgvkfeeidvdkde.eireelkelsgvrtvPqvfidgk 58 
                   f++  C  C+ ++++L+++ +  + i+ ++ +  +  el +  +++ vP vf +gk
    EGE27663.1 125 FVSLSCHNCPDVVQALNQFAILNDHIENEMIDgGVFPELVAEKKIQGVPAVFLNGK 180
                   55668*************************9888888888888************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.6
                   TSSHHH CS
  Glutaredoxin   7 ptCpyC 12 
                    +Cp+C
    EGE27663.1 342 AYCPHC 347
                   59**** PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8   0.00027       0.2       1      30 [.     216     243 ..     216     250 .. 0.91
   2 ?   -3.2   0.0       4.2   3.2e+03     110     142 ..     293     324 ..     270     335 .. 0.67
   3 ?    6.5   0.3    0.0049       3.6       1      36 [.     356     389 ..     356     408 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00027
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvli 30 
                    Dv viG+GpAg + A     a++gl+v ++
     EGE27663.1 216 DVTVIGGGPAGTAAAIYT--ARKGLRVAIV 243
                    9***********999888..9******998 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.2
  Lycopene_cycl 110 esveeeeageslvvleggrkirarlvvdargla 142
                     + ee++ g  +v+l+ g    +r+v+ a+g+ 
     EGE27663.1 293 SKLEEVD-GGYQVTLSTGASWLSRTVILATGAK 324
                    3444443.3667888888888888888888854 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0049
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    Dv+viG+G  g+  A  l  a    +v+++e ++sl
     EGE27663.1 356 DVAVIGGGNSGVEAALDL--AGIVNHVTVLEFGDSL 389
                    9*****************..999999****999987 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0016       1.2       2      31 ..     217     246 ..     216     297 .. 0.84
   2 ?    2.7   0.1      0.14   1.1e+02       2      33 ..     357     393 ..     356     424 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0016
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S- CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvre 31 
                     ++v+G+G  Gta A+  a++g +v + + +
      EGE27663.1 217 VTVIGGGPAGTAAAIYTARKGLRVAIVADR 246
                     9********************999887655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.14
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-H.....H CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvree.....e 33 
                     +av+G+G+ G   A  la   ++v++  + +     +
      EGE27663.1 357 VAVIGGGNSGVEAALDLAGIVNHVTVLEFGDslradQ 393
                     9**********99999998888888887766444332 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.7     2e+03      15      25 ..      22      32 ..       9      37 .. 0.75
   2 ?    9.3   0.1    0.0015       1.1       6      51 ..     208     253 ..     203     293 .. 0.78
   3 ?    1.6   0.0      0.36   2.7e+02      10      41 ..     352     382 ..     348     415 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.7
                  EEEES-SHHHH CS
  Shikimate_DH 15 vlliGaGemae 25
                   l+iGaGe  +
    EGE27663.1 22 QLVIGAGEHEK 32
                  58*****9765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0015
                   HHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHH CS
  Shikimate_DH   6 kleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerake 51 
                   +  +l+++ v++iG G  ++ +a + ++kg++  +va R   ++k+
    EGE27663.1 208 NEVQLETQDVTVIGGGPAGTAAAIYTARKGLRVAIVADRIGGQVKD 253
                   444799**************************99999997655554 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.36
                   .TT-EEEEES-SHHHHHHHHHHHCCT-CEEEE CS
  Shikimate_DH  10 lkekkvlliGaGemaelvakhLlakgvkkvvv 41 
                   +k+k v +iG G+ + ++a  L+   v++v+v
    EGE27663.1 352 FKGKDVAVIGGGNSGVEAALDLA-GIVNHVTV 382
                   67899***********9999987.44555666 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00023      0.17       2      47 ..     217     262 ..     216     294 .. 0.75
   2 ?    1.9   0.2      0.25   1.8e+02       2      31 ..     357     390 ..     356     438 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksle 47 
                 v+viG G  G+  a  +a++gl+V +v  +     k ++ ie+ ++
  EGE27663.1 217 VTVIGGGPAGTAAAIYTARKGLRVAIVADRIGGQVKDTQDIENLIS 262
                 9************************997766666666666666555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.25
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S....- CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdi....s 31 
                 vaviG G  G + a  +a    +V++++     +
  EGE27663.1 357 VAVIGGGNSGVEAALDLAGIVNHVTVLEFgdslR 390
                 9*************99999999999988754442 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00054       0.4     161     192 ..     165     196 ..     161     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00054
                 HHTT-SSSSEEEETTCEEEESSSSHHHHHHHH CS
        DSBA 161 qslgvtGvPtvvvdgkrmvfGadrldtladal 192
                 ++ +++GvP+v+++gk ++ G  +  +l ++l
  EGE27663.1 165 AEKKIQGVPAVFLNGKPFANGKVDTAKLIEKL 196
                 6789*****************99998887776 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.72   5.4e+02       5      14 ..     130     139 ..     127     143 .. 0.84
   2 ?    9.4   0.2    0.0017       1.2      22      31 ..     342     351 ..     328     352 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.72
  zinc_ribbon_9   5 ChqCdrfVsv 14 
                    Ch+C   V++
     EGE27663.1 130 CHNCPDVVQA 139
                    ****988876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0017
  zinc_ribbon_9  22 vlCPhCgggF 31 
                    ++CPhC+g F
     EGE27663.1 342 AYCPHCDGPF 351
                    58******99 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.2    0.0039       2.9       1      31 [.     216     243 ..     216     250 .. 0.84
   2 ?    3.5   0.1     0.034        26       1      32 [.     356     384 ..     356     429 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0039
                     EEEEE--SHHHHHHHHHHHHHTTTSSEEEEE CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgklevtlv 31 
                     +++++GGG+aG  aA++ a+ +   l+v +v
      EGE27663.1 216 DVTVIGGGPAGTAAAIYTARKG---LRVAIV 243
                     589**************99988...566555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.034
                     EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgklevtlve 32 
                     ++ ++GGG +G  aA  la  ++   +vt++e
      EGE27663.1 356 DVAVIGGGNSGVEAALDLAGIVN---HVTVLE 384
                     589***************99983...466665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 3772.72
//
Query:       EGE27664.1  [L=65]
Description: Fe-S assembly protein IscX [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-30  104.2   1.0    4.4e-30  104.1   1.0    1.0  1  Fe-S_assembly  Iron-sulphur cluster assembly
  ------ inclusion threshold ------
      0.075   13.6   0.0      0.085   13.4   0.0    1.2  1  PepSY_like     Putative beta-lactamase-inhibitor-like, PepSY-


Domain annotation for each model (and alignments):
>> Fe-S_assembly  Iron-sulphur cluster assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   1.0   4.9e-34   4.4e-30       1      62 [.       3      64 ..       3      65 .] 0.98

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 4.9e-34
  Fe-S_assembly  1 lkWtdseeIAiaLyekypdvdpltvrFtdLhewvleLpefdddpeksnEkiLEaIqmaWlee 62
                   l+W+d+ +IAiaL+ekyp+ d + +rFtdLh++v+eL++fdd+p+ snE+iLEaIqmaWl+e
     EGE27664.1  3 LTWQDTLDIAIALSEKYPNEDVQYIRFTDLHQYVCELEDFDDNPDGSNERILEAIQMAWLDE 64
                   79***********************************************************9 PP

>> PepSY_like  Putative beta-lactamase-inhibitor-like, PepSY-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.4e-06     0.085      41      69 ..      12      41 ..       8      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.4e-06
                HHHHHHHTTTEEEEEEEECS.SEEEEEETT CS
  PepSY_like 41 lkaiknsypdekvtkierkk.keyeielen 69
                + a++++yp+e+v++i +++ ++y+ ele+
  EGE27664.1 12 AIALSEKYPNEDVQYIRFTDlHQYVCELED 41
                5577899*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 497.42
//
Query:       EGE27665.1  [L=339]
Description: Iron (III) ABC transporter ATPase subunit FbpC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-35  121.2   0.0    6.3e-35  120.7   0.0    1.3  1  ABC_tran         ABC transporter
    3.9e-10   40.0   0.1    5.7e-05   23.1   0.1    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.3e-06   28.4   0.0    3.3e-06   27.2   0.0    1.6  1  TOBE_2           TOBE domain
    0.00069   19.6   0.0     0.0014   18.6   0.0    1.4  1  RsgA_GTPase      RsgA GTPase
    0.00072   19.0   0.0      0.028   13.8   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
      0.005   17.3   0.2     0.0089   16.4   0.1    1.7  1  AAA_16           AAA ATPase domain
     0.0064   17.0   0.1      0.011   16.3   0.1    1.3  1  AAA_23           AAA domain
     0.0071   16.6   1.6      0.055   13.7   1.6    2.1  1  AAA_22           AAA domain
     0.0099   16.1   0.1      0.081   13.2   0.1    2.2  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
  ------ inclusion threshold ------
       0.04   13.8   0.3      0.095   12.6   0.3    1.6  1  NACHT            NACHT domain
      0.044   14.2   0.1       0.27   11.7   0.1    2.1  1  AAA              ATPase family associated with various cellul
      0.046   14.0   0.0      0.074   13.3   0.0    1.4  1  AAA_28           AAA domain
      0.067   12.8   0.1      0.079   12.6   0.1    1.3  1  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
       0.07   13.0   0.2       0.53   10.2   0.1    2.0  2  Rad17            Rad17 P-loop domain
      0.079   12.7   0.1       0.23   11.3   0.1    1.7  1  AAA_29           P-loop containing region of AAA domain
       0.15   11.7   0.0       0.32   10.7   0.0    1.5  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.24   11.1   0.0       0.59    9.8   0.0    1.5  2  AAA_15           AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.0   5.9e-38   6.3e-35       1     136 [.      17     161 ..      17     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 5.9e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren........esdeeiekal 89 
                 l ++sl+lk g++  ++G +G+GK+tLl+++ag ++p++Gei +++k+l    + l+  +++ig+++q+  lfp+ltv++n        +++++ e+++
  EGE27665.1  17 LTDISLHLKSGQIACLLGASGCGKTTLLRCIAGFETPDSGEIYIQDKPLYAknIHLPAHKRQIGMVFQDYALFPHLTVADNiafglsamDKTAKSERVA 115
                 679*********************************************9997899999*****************************995566666666 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + l l++   + +++ p++LSgGq+qrval+ral+ +p+l+llDEp+
  EGE27665.1 116 EMLVLIG-MSEYANYYPHELSGGQQQRVALVRALAPRPSLILLDEPF 161
                 6666666.444666788*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     2e-05     0.021       1      22 [.      29      50 ..      29      74 .. 0.75
   2 !   23.1   0.1   5.4e-08   5.7e-05     226     298 ..     123     193 ..      87     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                +++l G+ g+GK++LL+++ ++
  EGE27665.1 29 IACLLGASGCGKTTLLRCIAGF 50
                679****************876 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 5.4e-08
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 ++ + +  ++elS G+++  al+ al+ ++   sl+l+DEp ++L+ +l + l + +++l    ++  il+TH+
  EGE27665.1 123 MSEYANYYPHELSGGQQQRVALVRALAPRP---SLILLDEPFSNLDVELRTNLSKEVRRLLIsQNVSAILVTHD 193
                 55666667899********9*******999...*********************9995555558999******8 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   3.2e-09   3.3e-06       2      68 ..     269     333 ..     268     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.2e-09
      TOBE_2   2 aiRPEklrlaaagg.anglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelsw 68 
                  iRP +++    ++  n+++ tV d+ + G + +y+++++++q+++++ + a+ ++++ +Gd++++ +
  EGE27665.1 269 LIRPHDVKP---SQdPNAIAVTVIDRDFHGGYWLYTLQTHDEQILLMQISMATSHRTHHVGDKIGVMI 333
                 69*******...44359***************************9999998886589******99866 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.3e-06    0.0014      80     128 ..       7      56 ..       2      63 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-06
                  EE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  80 llvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  l++s ++k  l++++ +lk+ ++++l+G SG GK+tL+  +++ ++   g
   EGE27665.1   7 LCISFDHKPILTDISLHLKSgQIACLLGASGCGKTTLLRCIAGFETPDSG 56 
                  567777778889999999999******************99986555555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.046        48      24      44 ..      27      47 ..      10      51 .. 0.83
   2 !   13.8   0.0   2.7e-05     0.028     135     212 ..     126     207 ..      54     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.046
                SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAi 44
                 ++ +++G+ G+GK+ ll  i
  EGE27665.1 27 GQIACLLGASGCGKTTLLRCI 47
                467899**********99877 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.7e-05
                 T......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHH..CTTSEEEEE-SSHHHCCC-SCEEEEE CS
                 x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkek..sknaQfivislreemlekadklvgvt 212
                        +LSgG+++ va  L+ A+    + +l llDe  ++LD + ++++++ +++   s+n+  i +++++     +  +vg+ 
  EGE27665.1 126 YanyyphELSGGQQQRVA--LVRALA--PRPSLILLDEPFSNLDVELRTNLSKEVRRLliSQNVSAILVTHDQAEAFAMADVVGLI 207
                 24444449******9665..554443..234599*********************9653378888999999887766666666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   8.5e-06    0.0089      24      46 ..      27      49 ..      17     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.5e-06
      AAA_16 24 pelvllsGesGvGKsslvrellr 46
                +++  l G+sG+GK++l+r+++ 
  EGE27665.1 27 GQIACLLGASGCGKTTLLRCIAG 49
                468899**************984 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     1e-05     0.011      17      40 ..      22      48 ..       5      54 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1e-05
      AAA_23 17 F...skgltlItGpNGaGKTTildAik 40
                +   s  + ++ G  G+GKTT+l++i 
  EGE27665.1 22 LhlkSGQIACLLGASGCGKTTLLRCIA 48
                344666899****************96 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.6   5.3e-05     0.055       4      38 ..      26      74 ..      22     198 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.3e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaee................e 38
                + +i ++ G sG+GKTtllr ++   + ++   e                +
  EGE27665.1 26 SGQIACLLGASGCGKTTLLRCIAGFETPDSG--EiyiqdkplyaknihlpA 74
                78999***************99877643333..133656666666666662 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   7.7e-05     0.081      61      84 ..     149     172 ..     129     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.7e-05
     SbcCD_C  61 epalrlvfLDEAFsklDeesiatl 84 
                  p+++l++LDE Fs+lD e +++l
  EGE27665.1 149 APRPSLILLDEPFSNLDVELRTNL 172
                 5789*************9988776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3     9e-05     0.095       3      21 ..      30      48 ..      28      49 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9e-05
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                 +l G++G+GKTtLl+ +a
  EGE27665.1 30 ACLLGASGCGKTTLLRCIA 48
                5899***********9886 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00025      0.27       2      20 ..      31      49 ..      30     179 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
                EEESSTTSSHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavak 20
                +l G  G+GKT+l + +a 
  EGE27665.1 31 CLLGASGCGKTTLLRCIAG 49
                799*************997 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     7e-05     0.074       3      24 ..      31      52 ..      29     117 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7e-05
      AAA_28  3 vitGgestGKTtlleaLaargy 24
                +++G++++GKTtll+ +a  ++
  EGE27665.1 31 CLLGASGCGKTTLLRCIAGFET 52
                799***********98885544 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.5e-05     0.079       9      41 ..      22      54 ..      17     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.5e-05
                 S-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  9 fpivqGqrtlipgafgvGktvisqslskqsnsd 41
                 + +  Gq  +++ga+g+Gkt++++ ++   + d
   EGE27665.1 22 LHLKSGQIACLLGASGCGKTTLLRCIAGFETPD 54
                 55678******************9998776555 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0005      0.53      38      66 ..      20      48 ..      12      58 .. 0.82
   2 ?    0.4   0.0      0.51   5.4e+02     103     171 ..     123     190 ..     103     198 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0005
       Rad17 38 dvLesrkkriLLisGPsGCgkstvvkvLs 66
                 +L  +  +i  + G sGCgk+t ++ ++
  EGE27665.1 20 ISLHLKSGQIACLLGASGCGKTTLLRCIA 48
                567777789999************99876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.51
       Rad17 103 lsqiesfkeleLkdakylklqklGddlrtdkklilvedlPnkfyrds.dalrevirkylrssealplilv 171
                 +s  + +   eL + + +++  l   l    +lil+++  ++   ++  +l + +r+ l s++  + ilv
  EGE27665.1 123 MSEYANYYPHELSGGQQQRVA-LVRALAPRPSLILLDEPFSNLDVELrTNLSKEVRRLLISQNV-SAILV 190
                 666677777777777777776.67778888899***9988999999966788889998888777.66665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00021      0.23      18      39 ..      23      44 ..      17      56 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
      AAA_29 18 eidlkg.atlltGpsGsGKSTll 39
                +++ +g +  l G+sG GK+Tll
  EGE27665.1 23 HLK-SGqIACLLGASGCGKTTLL 44
                444.345999************9 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00031      0.32       5      21 ..      34      50 ..      31      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
  Viral_helicase1  5 GvpGcGKStlirkllrt 21
                     G+ GcGK+tl+r ++  
       EGE27665.1 34 GASGCGKTTLLRCIAGF 50
                     999*********99876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00056      0.59      15      82 ..      18      82 ..      16     132 .. 0.74
   2 ?   -1.7   0.0       1.7   1.8e+03     323     365 ..     151     193 ..     132     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00056
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdve 82
                 d++++l++  + +l G+ ++GK+++l+ +  F + +    + +i+i+++ l  ++   +  + +I + 
  EGE27665.1 18 TDISLHLKSGqIACLLGASGCGKTTLLRCIAGFETPD----SGEIYIQDKPLYAKNIHLPAHKRQIGMV 82
                5778888888899*****************9888876....4555555555555555555555555555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 ++ ++l++EP  +L  ++ + l k  ++l+ + +   i+ TH 
  EGE27665.1 151 RPSLILLDEPFSNLDVELRTNLSKEVRRLLISQNVSAILVTHD 193
                 5679999999999999999999999999999999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2433.02
//
Query:       EGE27666.1  [L=517]
Description: Iron (III) ABC transporter membrane permease FbpB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-14   52.7  55.6    5.2e-10   39.4  17.5    3.4  3  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4  17.5   2.9e-14   5.2e-10       1     171 [.      52     234 ..      48     240 .. 0.83
   2 ?   -1.6   3.2      0.11   1.9e+03      12      67 ..     263     313 ..     258     324 .. 0.68
   3 !   26.2  18.8   3.1e-10   5.6e-06       2     172 ..     326     511 ..     322     516 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 2.9e-14
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.....................vilsilghlilpviillllsaapyvrlirraal 76 
                   g+++++l+a + n++l++++ + + ++l++P +vla++ + +f                      i        +++ +++ l++ pyv+l+ ++a+
    EGE27666.1  52 GTTTAWLTA-MTNFPLRRFFGWAMMLPLAMPAYVLAFVQLGIFdytgtistylrqawgfenglpDI-----RNGFGLTMVMSLTLYPYVYLLAKNAF 142
                   455666666.****************************99999************99755332222.....334447888899999*********** PP

  BPD_transp_1  77 rslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlv 171
                    s+     ea   lG+s  q f k +lP+a p i+ g ila++ +l ++ +++ +g +    t+ +   +   ys+ + +  la +++ l+++++
    EGE27666.1 143 GSMGNRALEAGASLGLSSVQSFLKLALPMARPWIAGGSILALMEVLADFGAVSVFGYD--TFTTAIYQAWFGFYSLDT-AKQLASLLIGLVFVFL 234
                   ********************************************************44..566667777777777777.5555555555555544 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.11
  BPD_transp_1  12 rnkkldkllrpliivll.slPsfvlaillvlvfvilsilghlilpviillllsaapy 67 
                   ++k++  l  +li +l+  +P++  +  +      +s++++ +l+ +++ +++++ +
    EGE27666.1 263 HKKWFATLYCGLILCLSfVIPIIQ-LTAWA-----MSSWQQIVLGELLMQIWHSVSI 313
                   678888888888887773444444.44444.....3889999988888888887655 PP

  == domain 3  score: 26.2 bits;  conditional E-value: 3.1e-10
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf...............vilsilghlilpviillllsaapyvrlirraalrslpkdl 83 
                   ++++i ++   +++   +++ ++ +++++P  vla+ +++ +                 + i++ +i++++i+ll+ ++++ +  + a+++ +   +
    EGE27666.1 326 LFIAIASG-LDKSRYALIVTKISTLGYAIPGTVLAVGVFVPVawldnwlitnmavfsGSDAIFKGTIFAMLIALLIRFLALGVQSVDAGMKRIRNTH 421
                   56777777.778899999999************888888777889999999999999888899999999**************************** PP

  BPD_transp_1  84 veaaralGasrwqifrkvvlPnalppiitglilafggllggavllefl..gswpGlgtllleailgydyseisnggvlalviavlllnlva 172
                   +eaa  lGa+++ ++++v lP++++ +  +++++f+  +++  +++++  ++w  l  +++ ++++  y+ +s +++la+++  l+ ++++
    EGE27666.1 422 IEAAASLGATPFGTVYRVYLPLIKSALGVSMLMVFVDTMKEMPITLMMrpFNWDTLAVRIFAFTSEGLYDKAS-FPALAIILTGLIPVILF 511
                   ***********************************************87789999999999999999999999.77777777766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3682.80
//
Query:       EGE27667.1  [L=331]
Description: Iron (III) ABC transporter iron binding protein FbpA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-25   87.6   0.6    1.3e-24   86.9   0.6    1.3  1  SBP_bac_6   Bacterial extracellular solute-binding protein
    7.3e-22   78.7   0.6    1.1e-21   78.1   0.6    1.3  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    1.3e-20   74.4   0.8      2e-20   73.8   0.8    1.2  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    1.7e-18   67.2   1.7    2.9e-18   66.5   1.7    1.4  1  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.6     3e-28   1.3e-24       2     223 ..      69     293 ..      68     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 3e-28
   SBP_bac_6   2 plpdlilsfdkdflekfieeglfqpld.panlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnngsdl 99 
                   +d+++++d   l ++ ++g++ p++ +    n++     ++l+dp++++ +++v +  + +n  +++  ++ +++aDL dP++kg+  l++ n+  +
  EGE27667.1  69 TQADVLITVDGGNLWQATQAGVLRPINsSVLKSNIP-----SHLRDPKNHWFGLSVRARTIFYNPNKVNPSEL-STYADLADPKWKGRLCLRTSNN-VY 160
                 579***********************9555556788.....9**************************99998.*********************9.** PP

   SBP_bac_6 100 fealllalykdfgedgvkkllrnlkanlhpaq...mvkaagslesgepavsvvpyffa.dilpekkkgk.nlkvvwPed...Galvspifmlvkkg.kk 189
                 ++ l++++  ++g++   + ++ + anl  a     +  + + ++g+  v ++ ++++ ++l +k +++ n+kv   ++   G+ v++  + v+k   +
  EGE27667.1 161 NQSLVATMIANHGQATTDRVVKGWVANLAAAPfanDTALLEAIDAGRCDVGIANTYYYgRLLNSKPQVAnNVKVFFANQagkGTHVNVSGAGVVKHsDN 259
                 ********************************997777788889999999998766550555555555599999998876679**************** PP

   SBP_bac_6 190 kelakafidfllspevqailakaggvfPvvtnpa 223
                 +++a++fi++l s+e+q+ +a+ ++++P++ ++ 
  EGE27667.1 260 PAEAQKFIEWLSSNEAQRLYADRNFEYPANIQVT 293
                 *****************************84333 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.6   2.5e-25   1.1e-21       9     314 ..      31     276 ..      25     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 2.5e-25
                 HHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHC.E. CS
   SBP_bac_1   9 alqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkild.s. 104
                  l +++a+a+++ ++g kV+++s   g l++  +l  ++ + +aDv ++ d++ + +  +ag+l p+++ v + ++p   ++ ++        +++ s 
  EGE27667.1  31 ELLKPIAEAYQQ-KTGTKVTVVSDKAGPLME--RLKAEGKNTQADVLITvDGGNLWQATQAGVLRPINSSVLKSNIPSHLRDPKN-------HWFGlSv 119
                 566777799877.7*****************..88888888889*****988888888899*****************8776666.......4444244 PP

                 EEESEEEEEEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHHHHH CS
   SBP_bac_1 105 kvlyvPlyaargliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatylvkl 203
                 +        ar ++YN+ ++ +++l+   t+ +l+++  k +   ++                                     +n + +  ++++ + 
  EGE27667.1 120 R--------ARTIFYNPNKVNPSELS---TYADLADPKWKGRLCLRTS------------------------------------NNVYNQSLVATMIAN 171
                 4........9***************9...******9999999999999....................................222222222222222 PP

                 HHHHHHHHH.....HHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE..EEEEEEEEBTTC CS
   SBP_bac_1 204 yavanltke.....lkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi..lgayglaipkgs 295
                 +++a  ++         + a+ ++++a+l ++ aG+++++i+ +++          + + ++k+++ +++ v+      + ++++  ++++g +++k+s
  EGE27667.1 172 HGQATTDRVvkgwvANLAAAPFANDTALLEAIDAGRCDVGIANTYY---------YGRLLNSKPQVANNVKVFFA----NQAGKGthVNVSGAGVVKHS 257
                 222222222000003444555555556666666*************.........88888888888888888873....333333468*********** PP

                 STHHHHHHHHHHHTSHHHH CS
   SBP_bac_1 296 knpeaAkkFldfllspeaq 314
                 +np++A+kF+++l s+eaq
  EGE27667.1 258 DNPAEAQKFIEWLSSNEAQ 276
                 ******************9 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.8   4.4e-24     2e-20       2     279 ..      36     303 ..      36     306 .. 0.81

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 4.4e-24
                 HHHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH-HHHHHTT--TS.----EEEEEEE-EEEEE CS
   SBP_bac_8   2 lakefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnlddltdalaavgydgklygvPyasetpyvliyn 100
                 +a+++++ktg kv+vv+   + l++ lka+ +  +a d ++++ ++++l+++ ++g+l +++++    ++++ l+    d k  ++ + +    +++yn
  EGE27667.1  36 IAEAYQQKTGTKVTVVSDKAGPLMERLKAEGKNTQA-D-VLITVDGGNLWQATQAGVLRPINSSVLKSNIPSHLR----DPKNHWFGLSVRA-RTIFYN 127
                 689**************99999*******9865555.5.589999*****************9999999999999....5566888888887.79**** PP

                 HHHHHHS.---BHHHHHHHHHHHHHH-SE..GG---G.GGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S..--SSTTTTTSBSEEEE- CS
   SBP_bac_8 101 kdllekaedpktwdellaaakklkgkfgl..pdpasg.wlqaallakdgksldddggkdglkealellkklkdngktydtgadavsefanGevafting 196
                   ++       t+++l +  +k+kg+  l  +++ ++ +l a+++a++g+ ++d      +++   ++++l ++   + +++++ +++  G+   +i+ 
  EGE27667.1 128 PNKVNPS-ELSTYADLAD--PKWKGRLCLrtSNNVYNqSLVATMIANHGQATTDR-----VVKG--WVANLAAAP--FANDTALLEAIDAGRCDVGIAN 214
                 ****987.9*********..*******7633556643488999999777776653.....4444..666666665..557788999***********98 PP

                 TTHHHHHH...-T.TTSEEEE--S-...-EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTTHHHHHH-HH CS
   SBP_bac_8 197 swdiaaaq...ka.gkklgaivpkq...gsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaalspevkkdpa 279
                 +  +  +     +   ++++ + +q   g+ ++++g  v k+++n+++ A++F++wl+s+e+q+ +a+     p+n  ++ +p+v+++  
  EGE27667.1 215 TYYYGRLLnskPQvANNVKVFFANQagkGTHVNVSGAGVVKHSDNPAE-AQKFIEWLSSNEAQRLYADRNFEYPANIQVTPTPAVARWGR 303
                 87777666222332558888877543337******************7.***************99996666899999998998888765 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   1.7   6.4e-22   2.9e-18       3     227 ..      23     282 ..      22     285 .. 0.73

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 6.4e-22
                 EEE-SSTHHHHHHHHHHHHHHH---EEEEESSHHHHHHHHHHH.....-SEEEESSH.HHHHHHHHGGGGG................GG-EEEEEEEEE CS
  SBP_bac_11   3 vaaagslaaalrelaaaFeahtgvkvevsaggsgklarqiadga...rpDvwipassawlellaaaglvqa................esavplassplv 82 
                 v++++   + l+ +a+a++++tg kv+v +  +g l+++++++    ++Dv+i  + + l ++ +ag++++                +           
  EGE27667.1  23 VVYSARADELLKPIAEAYQQKTGTKVTVVSDKAGPLMERLKAEGkntQADVLITVDGGNLWQATQAGVLRPinssvlksnipshlrdP----------- 110
                 667777799*******************************5554489***********************755555555555444441........... PP

                 EEESTT-.....................TT---SHHHHHHSS--EEEE--T-TTTTH..H.HHHHGGG--HHHHHHHHHTEEEEESSH....HHHHHHH CS
  SBP_bac_11  83 iavpkgn.....................pkkikgwadLlkpglklavadPttspsGl..aalalleaagaqellkalekkvvklgess....rqlltav 154
                       +                     p   ++ adL++p++k  +   t+++++    + ++++++g++ +++ ++++v++l+ ++    + ll+a+
  EGE27667.1 111 ------KnhwfglsvrartifynpnkvnPSELSTYADLADPKWKGRLCLRTSNNVYNqsLVATMIANHGQATTDRVVKGWVANLAAAPfandTALLEAI 203
                 ......224444444444455554446688999**********755555444555553345577778786556666666666666655888799***** PP

                 HTTT-SEEEEEHHHH.....H...HSTTSSEEEE--TTT--....EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHT CS
  SBP_bac_11 155 eageadagivyesea.....kaa.engdkleavylpeglnl.dpldypaavlkkaakreaAraFlafLrspeaqailrky 227
                 +ag+ d+gi++           + + + +++++   +     +  + +a+v+k+++++++A++F+++L s eaq++ ++ 
  EGE27667.1 204 DAGRCDVGIANTYYYgrllnS-KpQVANNVKVFFANQAGKGtHVNVSGAGVVKHSDNPAEAQKFIEWLSSNEAQRLYADR 282
                 *********875555554442.23456677777666666664556999**************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2325.57
//
Query:       EGE27668.1  [L=394]
Description: succinyl-diaminopimelate desuccinylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-44  152.2   0.1    3.6e-44  150.9   0.1    1.5  2  Peptidase_M20  Peptidase family M20/M25/M40
    4.8e-23   81.1   0.1    1.1e-22   80.0   0.1    1.6  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.26   2.3e+03     168     184 ..      38      56 ..       4      62 .. 0.66
   2 !  150.9   0.1     4e-48   3.6e-44       1     205 [.      76     389 ..      76     391 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.26
                    TTE.EEEEEE.SSGGCTTS CS
                    xxx.xxxxxx.xxxxxxxx RF
  Peptidase_M20 168 gip.tvmifg.pgsglaHs 184
                    g    +m+fg p++++ H+
     EGE27668.1  38 GFDcEFMYFGdPNDSGDHA 56 
                    3332678899888766676 PP

  == domain 2  score: 150.9 bits;  conditional E-value: 4e-48
                    EEEEES-BSSTTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHHHHH.TTTCESE CS
                    xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakallegle.erekvda 93 
                    ++++H+DvVp +++++w++ pfs+t+++GklyGrGa+dmk+g+++++ a++++ ++++++ g+i +l+++dEEg   +G+ ++++ l+ +++k+d+
     EGE27668.1  76 CFAGHTDVVPIGDESAWKFpPFSATVHEGKLYGRGASDMKTGIASFVIAAENFIKNHPNHTGSIAMLITADEEGPAiNGTIKVAQTLKeRGQKIDF 171
                    589*******888889*********999*********************************************9889***********99****** PP

                    EEEEEEESSSBTCHSTETEEEE.......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
  Peptidase_M20  94 vfelhieepgileagklaigvv.......................................................................... 115
                       ++++ep+  ++ +    ++                                                                          
     EGE27668.1 172 ---CLVGEPSSTQSLG--DVIKngrrgslnakltvtgkqghiayphlainpihaacpaldelikthwddgneyfpktslqisnirsgtgatnvigg 262
                    ...77********666..444466************************************************************************ PP

                    ....................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHHTTT..EEEE CS
                    ....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
  Peptidase_M20 116 ....................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsgpggtdarffagi..ptvm 173
                                                        ++++e+  +g p+ ++ +++v a+ +a++ ++g + +l++sg g++d rf+a i   +v+
     EGE27668.1 263 tceilfnfryctentaenlmakthaifdkhfrhtdaTYQIEWTLSGVPFLTEKGEFVSACIDAIKTVTGTNAQLSTSG-GTSDGRFIAPImnAQVV 357
                    ***********************************88******************************9999*******.********888644778 PP

                    EEE.SSGGCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 174 ifg.pgsglaHspnEyvdledlekgikvlarll 205
                     +g  +  ++H+++E vd+edle+ +++++++l
     EGE27668.1 358 ELGvLN-TTIHQVDESVDIEDLEQLTQIYEEIL 389
                    8**666.***********************987 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.1   1.2e-26   1.1e-22       1     107 [.     189     295 ..     189     297 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.2e-26
                 SEB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C.CCCEESSEEEEEEEEEHHHHHHHHHHHHHHH CS
   M20_dimer   1 ighkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGs.aknvipdeaeakidiRllpgedpeevleeie 98 
                 +g++G++ +k+tv+gk+gH ++p+ ++N+i++++ +l+el ++++d + ++++p+t+l++++i++G+ a+nvi +++e  +++R   + ++e ++++  
  EGE27668.1 189 NGRRGSLNAKLTVTGKQGHIAYPHLAINPIHAACPALDELIKTHWDDG-NEYFPKTSLQISNIRSGTgATNVIGGTCEILFNFRYCTENTAENLMAKTH 286
                 69**********************************************.************************************************** PP

                 HHHTSCCST CS
   M20_dimer  99 eilekeape 107
                 +i++k+ ++
  EGE27668.1 287 AIFDKHFRH 295
                 ****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2917.23
//
Query:       EGE27669.1  [L=51]
Description: hypothetical protein EA1_01491 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       116  (0.00646996); expected 358.6 (0.02)
Passed bias filter:                      116  (0.00646996); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 421.29
//
Query:       EGE27670.1  [L=200]
Description: hypothetical protein EA1_01496 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        0.7    9.4   5.9       0.81    9.1   5.9    1.1  1  UvrD-helicase  UvrD/REP helicase N-terminal domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.9   4.5e-05      0.81      94     235 ..       3     133 ..       1     182 [. 0.67

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 4.5e-05
                    EEEHHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCH........HHHCCCHHHHHCH CS
  UvrD-helicase  94 isTlHsfcqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnik........keelslskskaee 181
                    + T+   cq++l+ + ++ + d++++ ++ ++      ++l+ ell      + ++++  +++ + + + s ni         ++ l+ +k+ +e 
     EGE27670.1   3 KVTIPTPCQQQLNHYCKKWKNDKKLENYRMQE---QSLNKLFHELLP----LNNDISEILIKSSVLNDFYSTNIFtiypvakkIQSLDIDKYLKEG 91 
                    6788899************************9...478999999996....667788888888888888888888555555555566666666666 PP

                    HHHHHHHHHHTTCCTTHHCHSS...TSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHH CS
  UvrD-helicase 182 lrelvskakekqlspkelkkaf...ekasdlqkkiaeflkeyqeqkkeenalDfsdl 235
                     + lv ++k+  ++ k+++ ++   +               y ++ +++n   ++  
     EGE27670.1  92 DADLVMDIKNVTINGKNKNFYSfatK---------------YYSHHDAMNHPIYDAY 133
                    66666666666666555555444442...............3333333333223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1230  (0.0686039); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1467.87
//
Query:       EGE27671.1  [L=233]
Description: 2OG-Fe(II) oxygenase superfamily protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-21   75.6   0.1    6.5e-21   75.0   0.1    1.3  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
    1.6e-14   54.3   0.1    2.7e-14   53.6   0.1    1.4  1  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
     0.0013   19.1   0.0      0.015   15.7   0.0    2.3  1  2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.1   1.1e-24   6.5e-21       2      96 .]     140     228 ..     139     228 .. 0.92

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 1.1e-24
                     EEEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE.....ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEEE CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfekeegsgqrrltvllyLne.keseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgwi 95 
                     ++++y  g++y++HvDn    +g+++r++++++yLn+ +++++GGe+ + +k+ ++++++pk++rlv+F+s+    H+v+ +++   R+s+++w+
      EGE27671.1 140 HYACYPVGFGYQWHVDNP---KGRDDRVISAVFYLNDdWQTTDGGEILVIDKTGKQQTLQPKANRLVIFDSNLK--HQVNITHR--YRFSIATWM 227
                     6899************97...67789***********************9*********************766..*****854..9*******9 PP

                     E CS
  2OG-FeII_Oxy_3  96 r 96 
                     r
      EGE27671.1 228 R 228
                     6 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.1   4.5e-18   2.7e-14       2      92 ..     140     227 ..     139     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.5e-18
  2OG-FeII_Oxy_4   2 svssYekgdvllnHdDvle..geRrvayilyleeeWkeddGGaLllsddegdvtksivPkwnqlvlFevkeshsvaevasvaekeRlsisgWf 92 
                     ++++Y  g  +  H D+ +  ++R+++ ++yl+++W++ dGG++l+ d+ g+  +++ Pk n+lv+F+++ +h+v+     +++ R+si+ W+
      EGE27671.1 140 HYACYPVGFGYQWHVDNPKgrDDRVISAVFYLNDDWQTTDGGEILVIDKTGK-QQTLQPKANRLVIFDSNLKHQVNI----THRYRFSIATWM 227
                     5789999999******9652279*********************99998887.59**************99999876....5689*******8 PP

>> 2OG-FeII_Oxy_5  Putative 2OG-Fe(II) oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.5e-06     0.015      61      99 ..     188     224 ..     160     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.5e-06
  2OG-FeII_Oxy_5  61 enqslvdvkpkeGdlvlFPswlrHevlpnegeeeRisis 99 
                     ++ +  +++pk+ +lv+F s l+H+v     ++ R si+
      EGE27671.1 188 KTGKQQTLQPKANRLVIFDSNLKHQVNIT--HRYRFSIA 224
                     45677789*****************9654..45566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1771.04
//
Query:       EGE27672.1  [L=295]
Description: hypothetical protein EA1_01506 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-52  177.5   0.0    3.1e-52  177.2   0.0    1.0  1  RsmJ           Ribosomal RNA large subunit methyltransferase 
     0.0076   15.9   0.1      0.048   13.3   0.0    2.3  3  Cons_hypoth95  Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> RsmJ  Ribosomal RNA large subunit methyltransferase D, RlmJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.0   3.5e-56   3.1e-52       2     236 ..      33     277 ..      32     292 .. 0.93

  Alignments for each domain:
  == domain 1  score: 177.2 bits;  conditional E-value: 3.5e-56
                 S--EEEESS--SSEEETTSHHHHHHSGGGGTGGGTTT-.....TT--GGGHHHHHHHHHTTTTSS--EEE-HHHHHHHH.....S-TT-EEEEE---TT CS
        RsmJ   2 kpfavlDthaGvGrYdLsseeaektgeaeeGiaRliaq.....adlpaeleryldvvrklnkgeklryYpGspllarrl.....lReqDrlvlteLhpk 90 
                 kpf vlD++ G+G Y+L+s e++kt ea+ G++ l ++     + lp+ ++ryl  +    +  +   YpGsp  ++++     + +  r+ + e   +
  EGE27672.1  33 KPFYVLDAYGGRGLYSLASSETQKTQEAQRGVVVLEQAvkaglDGLPNAVSRYLSDLAFARQKYDQYVYPGSPWWIAHHgeyhsTNAPLRAEAFETVAD 131
                 89*********************************99988888899************9999999********98887622222556669999****** PP

                 HHHHHHHHTTT-TTEEEESS-HHHHHHHS-S-TTS-EEEEE----SSCC.HHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHCTT---EE CS
        RsmJ  91 daalLkaelakdkrvrvkkadGfaalkaklppkekRglvliDPPyeakd.eydrvvaalrealkRlaqavlaiWyPikdrkqlkaflkaleatvirkiL 188
                 ++++L+ +l +   + +++ d f+ ++a +ppkekRg++l+DPP+e+++ +++r+v+ l  ++k++a++++ +WyPik+ ++++ f+k++++t+i+k L
  EGE27672.1 132 EYDALNYQLYQL-PIGIHHRDAFEGVRAVIPPKEKRGIILLDPPFEQEHkDFSRLVDLLVSSHKKFATGTFILWYPIKNIEAVELFYKKMKRTGIKKQL 229
                 ********9875.699******************************9987************************************************* PP

                 EEEEESS---SSSS--EEEEEEES--TTHHHHHHHHHHHHHHHH-TT- CS
        RsmJ 189 kielevrPdsderklngsgmvvinpPwtledelkevlpvlkkklaeet 236
                   el++ P++ + +lng+g++vinpPw++ d+++ev+++l+  l ++ 
  EGE27672.1 230 VCELNLYPNDVAVGLNGTGLLVINPPWQFADNAQEVIEFLAPILKPKD 277
                 ****************************************99998774 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       0.4   3.5e+03      40      54 ..      32      46 ..      23      51 .. 0.76
   2 !   13.3   0.0   5.4e-06     0.048      74     138 ..     123     191 ..     115     231 .. 0.80
   3 ?   -0.6   0.0     0.099   8.8e+02     115     143 ..     248     274 ..     208     278 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.4
                   HCC-EEEETT-TTSH CS
  Cons_hypoth95 40 iegarvLDlfaGsGa 54
                    +   vLD ++G G 
     EGE27672.1 32 AKPFYVLDAYGGRGL 46
                   566779******985 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5.4e-06
                    HHHHHHHHHHHCCCT--T...TTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH..HHHHHHHHH CS
  Cons_hypoth95  74 keavkilkenleelklee...etaelkedaleallklakkkeefdivflDPPyakell.ieevlellee 138
                    +ea++++ ++ ++l+ +     + ++ +da+e ++     ke+  i+ lDPP+++e+  + ++++ll +
     EGE27672.1 123 AEAFETVADEYDALNYQLyqlPIGIHHRDAFEGVRAVIPPKEKRGIILLDPPFEQEHKdFSRLVDLLVS 191
                    5788888888888887777677889999999999999999999************97666777776643 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.099
                    EEEEE--SSSTTCH.HHHHHHHHHTT-EE CS
  Cons_hypoth95 115 divflDPPyakellieevlelleekkllk 143
                     +  ++PP++  +  +ev+e l+   +lk
     EGE27672.1 248 GLLVINPPWQFADNAQEVIEFLA--PILK 274
                    5667899*999988899999988..5665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2328.55
//
Query:       EGE27673.1  [L=269]
Description: CDP-diacylglycerol-serine O-phosphatidyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-14   54.0   0.4    2.1e-14   54.0   0.4    3.1  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.4   1.2e-18   2.1e-14       2      66 .]      44     107 ..      43     107 .. 0.93
   2 ?   -2.1   6.5       0.4   7.2e+03       2      27 ..     190     231 ..     110     263 .. 0.71

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.2e-18
                      -HHHHHHHHHHHHHHHHHGGGS-H..HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   2 lPnaiTllrlllsvlailllltyyplvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                      +Pn+iT l+l++++++i+ l t+  +  a l +++++++D++DG+ AR +n +s +G++ DslaD
       EGE27673.1  44 IPNLITTLSLFSGFYSII-LSTSADYQRAGLAIFVSAFLDGMDGRAARMFNAQSPFGEQYDSLAD 107
                      8****************6.557777899999999******************999*********9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.4
                      -HHHHHHHHHHHHHHHHHGGGS-H................... CS
  CDP-OH_P_transf   2 lPnaiTllrlllsvlailllltyyp.................l 27 
                      +P a+T++  l +++  +l+ +++                  l
       EGE27673.1 190 IPTALTWFFALWTIVCGILM-VSNIkyysfkefdkqkvpfivL 231
                      45555554444333333222.1111345556666666665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2183.17
//
Query:       EGE27674.1  [L=609]
Description: condensin subunit Smc, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-29  102.1   0.2    6.3e-29  101.0   0.2    1.6  1  SMC_N           RecF/RecN/SMC N terminal domain
    2.8e-08   32.9  40.1    0.00016   20.5   7.8    2.1  2  AAA_13          AAA domain
    0.00046   19.2  54.5     0.0034   16.3  18.2    4.0  4  Spc7            Spc7 kinetochore protein
    0.00053   20.2   0.1      0.098   12.9   0.0    3.6  3  SbcCD_C         Putative exonuclease SbcCD, C subunit
     0.0025   16.1  42.7     0.0089   14.3   0.6    3.3  3  EzrA            Septation ring formation regulator, EzrA
  ------ inclusion threshold ------
       0.01   16.4  57.3      0.048   14.2  20.7    3.5  3  APG6_N          Apg6 coiled-coil region
      0.015   15.6   1.4      0.015   15.6   1.4    6.0  6  BLOC1_2         Biogenesis of lysosome-related organelles com
      0.025   14.6  37.9      0.033   14.2   3.2    5.5  5  DUF1664         Protein of unknown function (DUF1664)
      0.035   14.3  53.0      0.042   14.0   6.1    4.5  5  Tropomyosin_1   Tropomyosin like
      0.058   13.4  48.2       0.56   10.2  25.6    3.7  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.074   13.0   1.2       0.85    9.6   0.2    2.7  2  Tnp_22_trimer   L1 transposable element trimerization domain
       0.14   11.5  46.9       0.24   10.8  20.2    3.5  4  Tropomyosin     Tropomyosin
        0.3   11.5  30.2        1.9    8.9   0.6    6.8  8  FlaC_arch       Flagella accessory protein C (FlaC)
       0.34    8.7  51.2     0.0028   15.6  26.0    2.9  3  Myosin_tail_1   Myosin tail
       0.82   10.0   6.4          2    8.7   1.5    3.1  2  DUF4806         Domain of unknown function (DUF4806)
        1.1    9.6  47.8       0.28   11.4   7.1    5.3  5  Seryl_tRNA_N    Seryl-tRNA synthetase N-terminal domain
        2.1    7.6  53.8       0.15   11.4  26.4    3.7  3  GAS             Growth-arrest specific micro-tubule binding
        2.8    6.2  48.2         37    2.5  46.8    2.3  1  MAD             Mitotic checkpoint protein
        6.9    7.8   0.0        6.9    7.8   0.0    4.9  4  DUF5320         Family of unknown function (DUF5320)
        7.7    6.7  50.9       0.14   12.4  11.4    4.3  4  Jnk-SapK_ap_N   JNK_SAPK-associated protein-1


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.2   7.1e-32   6.3e-29     135     219 ..     232     591 ..      81     592 .. 0.79

  Alignments for each domain:
  == domain 1  score: 101.0 bits;  conditional E-value: 7.1e-32
                 T.................................................................................................. CS
                 x.................................................................................................. RF
       SMC_N 135 e.................................................................................................. 135
                 +                                                                                                  
  EGE27674.1 232 Qalqiklgtltqakthaerllemakhsasqtqadiettkstqqelsqklpvleeafkaakavshelkiasdeyelaakaqqiaqsqlqetlteahtkfa 330
                 044444444444444444444444444444444444444444444444444444444444444444444444444444444444444444777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  EGE27674.1 331 taqatlaqisadtavgesrvqdiggelmrldesfnlaskladfrtnpnqnftdnsarqnqikskiaelgavnlaaaaelaelearvspmdeqinditqs 429
                 9************************************************************************************************** PP

                 ..............................................................................CS-HHHHHHHHHHHHHHHHCC CS
                 ..............................................................................xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ..............................................................................lLSgGektLvalaLlfAiqkv 156
                                                                                               +LSgGektL+al+L+fAi k 
  EGE27674.1 430 mkklqdairaidektktlfltaleavnkelnalfskvfgggqasltlmadddlpksdkwraglvlmaqpkgkknsrlaVLSGGEKTLTALSLIFAIFKQ 528
                 *************************************************************************************************** PP

                 S--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 157 kpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkvengvs 219
                 +pap+++lDe+da LD++nv+++  l++e  +++Qfi is+++  ++ ad+l g+t+ + g+s
  EGE27674.1 529 HPAPFCVLDEVDAPLDDANVARFTGLIRELADDVQFIFISHNKLAMQIADELKGITMPTAGIS 591
                 ********************************************************9877765 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4  24.2   7.9e-07   0.00071     282     467 ..      92     280 ..      77     283 .. 0.88
   2 !   20.5   7.8   1.8e-07   0.00016     300     510 ..     291     519 ..     279     523 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.9e-07
      AAA_13 282 eekqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqrale.aKrkepfksvelesvkakiesikklvaeinelia 379
                 e   ++L+ l +++e+++++l++ l+ +  ++ e ++   +k+ +++++ +le+ L+ l  +l+ +K  + + + +l++++++ +sik++++e+n +i+
  EGE27674.1  92 EVLEDELNTLEDSLEKDQKQLKQVLTRLQSSKIELEEITAQKNVVTQQLHQLEQGLTMLTAKLDsEKARRESIDSQLKRLDDENSSIKNELQELNMQIE 190
                 45557788888888888888888898888899999999999********************99636777778899************************ PP

      AAA_13 380 khNekvanleeekeeakkklelhl..veeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeL 467
                        +le ++e+a++++  +   + e+ ++l++ +++y++l+ ++  l+++++ +e+ l+ ++  +++ ++ +++ k + +e+ ++L
  EGE27674.1 191 TCDFGLRELEPKVEQANQAMAVQTvrIDEAVAKLKTQNDTYQALQIKLGTLTQAKTHAERLLEMAKHSASQTQADIETTKSTQQELSQKL 280
                 ****************9987766522688888899999*********************************************9999987 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.8e-07
      AAA_13 300 selleklkavsdeasensa.feedkeelkaeaealeeqLkglqraleaKrkepfk.svelesvkakie...sikklvaeineliakhNekvanleeeke 393
                 + ++ +lk +sde+++  +  + ++++l++ + +  +++ ++q  l +   + +  +  ++++ +++    +  +l +++ +  ++ N+  ++  ++++
  EGE27674.1 291 KAVSHELKIASDEYELAAKaQQIAQSQLQETLTEAHTKFATAQATLAQISADTAVgESRVQDIGGELMrldESFNLASKLADFRTNPNQNFTDNSARQN 389
                 3344445555554333222133445555555555555566666666555444443355556665555244466777788888888999999999***** PP

      AAA_13 394 eakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrde.kpaa....eeinkeLkaf.GlgeleLkfeee.... 482
                 ++k+k+    + +l ++      ++++le+ ++ ++++++++++ +kkl++ i+++ +++++    a     +e+n + +++ G g+++L++ ++    
  EGE27674.1 390 QIKSKIAELGAVNLAAAA-----ELAELEARVSPMDEQINDITQSMKKLQDAIRAIDEKTKTLfLTALeavnKELNALFSKVfGGGQASLTLMADddlp 483
                 ******998877765543.....3556666666666666666666666666666666555553133330001556666667779999999999997787 PP

      AAA_13 483 .....kkgYrivrkg...gsqaa.etLSeGEktaIaf 510
                       +g  ++ +    ++    + LS GEkt+ a+
  EGE27674.1 484 ksdkwRAGLVLMAQPkgkKNS-RlAVLSGGEKTLTAL 519
                 776664555555543222223.248899999999875 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3  18.2   3.8e-06    0.0034     132     251 ..      65     190 ..      55     194 .. 0.87
   2 ?    1.0  13.4      0.18   1.6e+02     151     247 ..     203     298 ..     194     314 .. 0.67
   3 ?    3.8  10.9     0.024        21     138     241 ..     249     362 ..     247     370 .. 0.61
   4 !   11.0   2.6   0.00015      0.14     179     253 ..     366     440 ..     359     462 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.8e-06
        Spc7 132 WRmqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles......idkeeLeelreelaelkaeieekkkelae 224
                 + m +l++L ++ ++ l++ ++  e+Le  e+el++l ++le+ +++l++ l++lq+ + ele+      +  ++L++l + l+ l a++++ k++ ++
  EGE27674.1  65 FGMLHLSKLGDTSSQFLSDRKKHLERLEVLEDELNTLEDSLEKDQKQLKQVLTRLQSSKIELEEitaqknVVTQQLHQLEQGLTMLTAKLDSEKARRES 163
                 55778999999999999999*************************************888888744454466778999999999999999999999999 PP

        Spc7 225 lqeqleeleekieelkeqkseleeeia 251
                   +ql++l+++ +++k++ +el+ +i+
  EGE27674.1 164 IDSQLKRLDDENSSIKNELQELNMQIE 190
                 999999999999999999999999997 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.18
        Spc7 151 leedkelLekqeeeldellpeleee...kaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqksel 246
                 +e+ ++ ++ q   +de++ +l+++   +++l+ +l +l +a++      +  Le ++++ ++ +a+ie  k   +el ++l  lee+++++k+  +el
  EGE27674.1 203 VEQANQAMAVQTVRIDEAVAKLKTQndtYQALQIKLGTLTQAKT----HAERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLEEAFKAAKAVSHEL 297
                 45555666666666666666665541115577777777777444....466778888888888888888888888888888888888888887776666 PP

        Spc7 247 e 247
                 +
  EGE27674.1 298 K 298
                 5 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.024
        Spc7 138 egLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe.........aaeelesid.keeLeelreelaelkaeieekkkelaelq 226
                 e L e +++  ++ ++d e+ ++ ++el++ lp lee +++ ++  ++l+          +a+++++++ +e L e++ ++a+++a++++ ++++a  +
  EGE27674.1 249 ERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLEEAFKAAKAVSHELKIasdeyelaaKAQQIAQSQlQETLTEAHTKFATAQATLAQISADTAVGE 347
                 556666666666666666666666666666666666666644444433333222333333777777777777777788888888877777777777777 PP

        Spc7 227 eqleeleekieelke 241
                 ++++++  ++  l+e
  EGE27674.1 348 SRVQDIGGELMRLDE 362
                 777777666655554 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00015
        Spc7 179 leeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaea 253
                 l ++l++ ++  ++  + ++++ +++++++ael a   +  +elael++++   +e+i+++++++++l+++i++ 
  EGE27674.1 366 LASKLADFRTNPNQNFTDNSARQNQIKSKIAELGAVNLAAAAELAELEARVSPMDEQINDITQSMKKLQDAIRAI 440
                 6667777777666656666888899*********************************************99864 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.42   3.8e+02      60      79 ..     208     227 ..     199     234 .. 0.79
   2 ?    0.4   0.1      0.89     8e+02      53      74 ..     344     365 ..     305     370 .. 0.66
   3 !   12.9   0.0   0.00011     0.098      21      89 ..     500     556 ..     487     557 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.42
     SbcCD_C  60 repalrlvfLDEAFsklDee 79 
                 +  a+++v +DEA +kl  +
  EGE27674.1 208 QAMAVQTVRIDEAVAKLKTQ 227
                 467899********998665 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.89
     SbcCD_C  53 lyssaeg.repalrlvfLDEAFs 74 
                 +++++ + ++   +l+ LDE F+
  EGE27674.1 344 AVGES-RvQDIGGELMRLDESFN 365
                 23333.2356678999*****98 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.00011
     SbcCD_C  21 gkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 g   + +++ + lSGGek +l++l l +a+  +            +++LDE  + lD+ ++a+  +l++
  EGE27674.1 500 G---KKNSRLAVLSGGEK-TLTALSLIFAIFKQHPA--------PFCVLDEVDAPLDDANVARFTGLIR 556
                 3...34889999******.88888888666554444........599************9999888876 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  16.0     0.026        23     314     433 ..      90     206 ..      76     210 .. 0.58
   2 !    9.4  13.0   0.00029      0.26     256     400 ..     198     341 ..     194     345 .. 0.89
   3 !   14.3   0.6   9.9e-06    0.0089     319     415 ..     347     443 ..     336     460 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.026
                 HHHT--HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 314 klehlekqnkelkeeldrlkqsYeLseeeleklrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeileslkslrkdEkrA 412
                 +le le+++++l+++l++ ++  +L ++ l++l++ + el+e+ ++ + ++++l++ ++  ++l+ +l++ + + e i++++++++++ +s++++ ++ 
  EGE27674.1  90 RLEVLEDELNTLEDSLEKDQK--QL-KQVLTRLQSSKIELEEITAQKNVVTQQLHQLEQGLTMLTAKLDSEKARRESIDSQLKRLDDENSSIKNELQEL 185
                 333344444444444443333..23.4556666666666666666666666666666666666666666666666666666666666666666666666 PP

                 HHHHHHHHHHHHHHHHHSSS- CS
        EzrA 413 reqldeikkelkeikrkieks 433
                 + q+++ +  l+e++ k+e+ 
  EGE27674.1 186 NMQIETCDFGLRELEPKVEQA 206
                 666666666666666666655 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00029
                 HHHHHHHHHH..HHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSHHHHT--HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHH CS
        EzrA 256 elekkieeil..erlkeleledveeelktieeeidsLyddlekEveAkkeveknlkelkeklehlekqnkelkeeldrlkqsYeLseeeleklreleke 352
                 ele k+e++    ++++++++++ ++lkt ++ +++L   l +  +Ak + e+ l+  k   +++++ ++++k+  ++l+q+    ee  + ++ ++ e
  EGE27674.1 198 ELEPKVEQANqaMAVQTVRIDEAVAKLKTQNDTYQALQIKLGTLTQAKTHAERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLEEAFKAAKAVSHE 296
                 6666777666113567889******************************************************************************98 PP

                 HHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHH CS
        EzrA 353 lkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeile 400
                 lk  +++ye    + +++++a S+lqe l e+  k ++ +  + +i+ 
  EGE27674.1 297 LKIASDEYEL---AAKAQQIAQSQLQETLTEAHTKFATAQATLAQISA 341
                 8888888876...56789******************999999988865 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 9.9e-06
                 -HHHHTTGGG-TTTS-GGGSSTTTSTTHHHHHHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 319 ekqnkelkeeldrlkqsYeLseeeleklrelekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeileslkslrkdEkrAreq 415
                 e+ ++++  el rl++s++L+ +  +   + ++++ + +++ ++++ k++e  ++    + el ele +++ ++e+ ++i +s+k+l++  +   e+
  EGE27674.1 347 ESRVQDIGGELMRLDESFNLASKLADFRTNPNQNFTDNSARQNQIKSKIAELGAVNLAAAAELAELEARVSPMDEQINDITQSMKKLQDAIRAIDEK 443
                 57889999************9999999999*********************************************************9876655555 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  20.7   5.3e-05     0.048      23     130 ..      82     186 ..      68     189 .. 0.85
   2 ?    3.5  17.4       0.1        93      14     133 .]     217     336 ..     210     336 .. 0.91
   3 ?   11.6   2.3   0.00034       0.3      45     118 ..     384     458 ..     359     466 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.3e-05
      APG6_N  23 kerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeelds 121
                 ++r++ +e l+ l++e ++    +++le+ +++l+++    ++   eL+e+ +++  + ++l++le+ l  l ++ + +  ++ + + +l++l++e  s
  EGE27674.1  82 SDRKKHLERLEVLEDELNT---LEDSLEKDQKQLKQVLTRLQSSKIELEEITAQKNVVTQQLHQLEQGLTMLTAKLDSEKARRESIDSQLKRLDDENSS 177
                 4555555555555555444...5689************************************************************************* PP

      APG6_N 122 leaqyehaq 130
                 ++++++  +
  EGE27674.1 178 IKNELQELN 186
                 ****99765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.1
      APG6_N  14 ldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlel 112
                 +d+ +++++ + d+Y++   kl + ++ +++ +  le ++++ ++++++ e+  +  +el ++   le++ +a+++ + +l+   +++    +++q+ +
  EGE27674.1 217 IDEAVAKLKTQNDTYQALQIKLGTLTQAKTHAERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLEEAFKAAKAVSHELKIASDEYELAAKAQQIAQ 315
                 577788899999999999999988777776677889999999********************************************************* PP

      APG6_N 113 leleeeldsleaqyehaqnql 133
                 ++l+e l    ++++ aq+ l
  EGE27674.1 316 SQLQETLTEAHTKFATAQATL 336
                 ***************999865 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00034
      APG6_N  45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne.lqlelleleee 118
                 +    ++++ ++++l +   ++ +eL+ele+  + ++++++++++  ++l++  ++  ++ +  + + l+  ++e
  EGE27674.1 384 NSARQNQIKSKIAELGAVNLAAAAELAELEARVSPMDEQINDITQSMKKLQDAIRAIDEKTKTlFLTALEAVNKE 458
                 34566788999***************************************9887666666665444455555555 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.6      0.41   3.7e+02      40      69 ..      85     114 ..      69     121 .. 0.50
   2 ?    3.9   8.8     0.076        68      13      95 ..     117     203 ..     109     204 .. 0.87
   3 ?    3.0   0.5      0.15   1.3e+02      26      78 ..     204     252 ..     201     257 .. 0.63
   4 ?    3.1   1.7      0.13   1.1e+02      15      67 ..     231     283 ..     228     286 .. 0.86
   5 ?    4.3   1.3     0.057        51       6      78 ..     288     361 ..     284     365 .. 0.74
   6 ?   15.6   1.4   1.6e-05     0.015      49      91 ..     405     447 ..     366     450 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.41
     BLOC1_2  40 kdvaaslekkleklnekyeelqpylqqidq 69 
                 k+ ++ le+  ++ln ++++l++  +q++q
  EGE27674.1  85 KKHLERLEVLEDELNTLEDSLEKDQKQLKQ 114
                 333444444444444444444444444444 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.076
     BLOC1_2  13 aeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidq....iekqvteLeeavseLDeyskeLEakf 95 
                   l++++ +++ +++  ++++++ ++l++ +  l++kl+  +++ e+++++l+++d+    i+++++eL   ++  D   +eLE k+
  EGE27674.1 117 TRLQSSKIELEEITAQKNVVTQQLHQLEQGLTMLTAKLDSEKARRESIDSQLKRLDDenssIKNELQELNMQIETCDFGLRELEPKV 203
                 5699999************************************************97555588888888888888888888888776 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.15
     BLOC1_2  26 eklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLe 78 
                 e+ N+a++ +   +++++a+l+++ + +++    lq +l  + q +++ ++L 
  EGE27674.1 204 EQANQAMAVQTVRIDEAVAKLKTQNDTYQA----LQIKLGTLTQAKTHAERLL 252
                 677777777777777777777777666665....5555555555555555555 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.13
     BLOC1_2  15 leatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqi 67 
                  +a + ++ +L++  ++a++  +  k++a+++++++e ++++++el+++l  +
  EGE27674.1 231 YQALQIKLGTLTQAKTHAERLLEMAKHSASQTQADIETTKSTQQELSQKLPVL 283
                 577788888999999999999999999*******************9998665 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.057
     BLOC1_2   6 kvskyleaeleatvedyklLeklNeaasekykk.lkdvaaslekkleklnekyeelqpylqqidqiekqvteLe 78 
                 k++k +++el++++++y+l  k  + a+++ ++ l+++  ++++    l + ++  +   +++++i  ++ +L 
  EGE27674.1 288 KAAKAVSHELKIASDEYELAAKAQQIAQSQLQEtLTEAHTKFATAQATLAQISADTAVGESRVQDIGGELMRLD 361
                 67899*****************9998888877625555566666666677777777777777777776666665 PP

  == domain 6  score: 15.6 bits;  conditional E-value: 1.6e-05
     BLOC1_2  49 kleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeL 91 
                  + +l e+++ ++p+ +qi++i ++ ++L++a+ ++De +k L
  EGE27674.1 405 AAAELAELEARVSPMDEQINDITQSMKKLQDAIRAIDEKTKTL 447
                 45677888889999999********************999987 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.1     0.025        22      52     121 ..      76     144 ..      66     146 .. 0.62
   2 ?   14.2   3.2   3.6e-05     0.033      54     122 ..     133     201 ..     127     205 .. 0.90
   3 ?    2.1   3.4      0.21   1.9e+02      45     121 ..     209     284 ..     201     287 .. 0.71
   4 ?    3.8   0.4     0.063        57      70     121 ..     312     361 ..     288     376 .. 0.55
   5 ?   10.6   0.9   0.00049      0.44      60     118 ..     387     445 ..     365     449 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.025
     DUF1664  52 qvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 + s+ l++ k+hL +r++ ++++l+  ++  ++ ++++++v   l++ + ++e++ +  + + ++l+++e
  EGE27674.1  76 TSSQFLSDRKKHL-ERLEVLEDELNTLEDSLEKDQKQLKQVLTRLQSSKIELEEITAQKNVVTQQLHQLE 144
                 5566677777777.46666666666666666666666666666666666666666666555555555555 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.6e-05
     DUF1664  54 seslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 ++ ++++ ++L++ +  + +kld+ k+  ++i+++++++ ++ s+i++++++++  +e+ +  l+++e 
  EGE27674.1 133 KNVVTQQLHQLEQGLTMLTAKLDSEKARRESIDSQLKRLDDENSSIKNELQELNMQIETCDFGLRELEP 201
                 5667888899*************************************************9999999986 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.21
     DUF1664  45 svskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                  ++ q  ++ e++a+ k + ++  + ++ kl   ++++++ ++ ++ +++  s+++ d+e+ k++ ++l +kl  +e
  EGE27674.1 209 AMAVQTVRIDEAVAKLKTQ-NDTYQALQIKLGTLTQAKTHAERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLE 284
                 4555555555556655554.455677888888888888888888888888888889999888888888888887777 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.063
     DUF1664  70 rvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 ++   + + +e+ +e + + ++++  l++i+ d    ++ v++++++l r++
  EGE27674.1 312 QIA--QSQLQETLTEAHTKFATAQATLAQISADTAVGESRVQDIGGELMRLD 361
                 322..23344444555555555555555555555555555555555555554 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00049
     DUF1664  60 tkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskle 118
                  +++++s+i+++++   + ++  +e+++ v+ + e++++i + ++++++a++ +++k +
  EGE27674.1 387 RQNQIKSKIAELGAVNLAAAAELAELEARVSPMDEQINDITQSMKKLQDAIRAIDEKTK 445
                 45667777777777666666667777888888888888888888888888888887765 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  12.6    0.0036       3.2      63     142 ..      79     158 ..      71     159 .. 0.91
   2 ?   14.0   6.1   4.7e-05     0.042       3      66 ..     150     211 ..     146     238 .. 0.72
   3 ?   -1.1  13.0       2.2     2e+03      15     141 ..     216     332 ..     212     334 .. 0.62
   4 ?    2.9  10.5      0.13   1.1e+02       8     129 ..     244     362 ..     237     374 .. 0.68
   5 ?    8.0   2.5    0.0033         3      13      69 ..     385     441 ..     379     462 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0036
  Tropomyosin_1  63 ekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLretdvkaeelERkvkaLeqerdewekkyeeleekykeak 142
                    + +++ +k+    e l+  ++ LE+ le+ +k+Lk+ +++L+ + ++ ee+  + +++ q+ ++ e+ +  l++k+++ k
     EGE27674.1  79 QFLSDRKKHLERLEVLEDELNTLEDSLEKDQKQLKQVLTRLQSSKIELEEITAQKNVVTQQLHQLEQGLTMLTAKLDSEK 158
                    5678899999999******************************************************9999999988766 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4.7e-05
  Tropomyosin_1   3 nsLkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekae 66 
                     + kl++e+  ++ e + +++K+l++en +  +e+++L+ ++++ +  + +le k+++a++++ 
     EGE27674.1 150 LTAKLDSEK--ARRESIDSQLKRLDDENSSIKNELQELNMQIETCDFGLRELEPKVEQANQAMA 211
                    334555555..5*****************************99888777777777777766543 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.2
  Tropomyosin_1  15 kaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLretdvka 110
                    + +e+ +k+K+++++ ++   ++  Lt+   ++e  +e ++++ +++++  e   ++k+++ +l++k+ +LEe    + +         +e  +++
     EGE27674.1 216 RIDEAVAKLKTQNDTYQALQIKLGTLTQAKTHAERLLEMAKHSASQTQADIE---TTKSTQQELSQKLPVLEEAFKAAKAV-------SHELKIAS 301
                    6677777777777777777777777777777777777777766554444333...44455556888888888876555433.......33445566 PP

  Tropomyosin_1 111 eelERkvkaLeqerdewekkyeeleekykea 141
                    +e+E + ka +  + +  + + e+++k+++a
     EGE27674.1 302 DEYELAAKAQQIAQSQLQETLTEAHTKFATA 332
                    6666666666666666666666666665555 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.13
  Tropomyosin_1   8 eaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekL 103
                     + +a    e +++++ + + + +   +  ++L++k+ +lee    ++ +++   + a+++ ++++++ ++ +   +L e l e+ +k +++   L
     EGE27674.1 244 AKTHAERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLEEAFKAAK-AVSHELKIASDEYELAAKAQQIAQ--SQLQETLTEAHTKFATAQATL 336
                    444444445555566666666666666666788888888887775554.455545555555556666665554..6899***************** PP

  Tropomyosin_1 104 retdvkaeelERkvkaLeqerdewek 129
                     ++++ +   E +v+++  e    ++
     EGE27674.1 337 AQISADTAVGESRVQDIGGELMRLDE 362
                    ****9999999999998777666665 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0033
  Tropomyosin_1  13 qekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeese 69 
                     ++ +++++k+ el   nl+   e+++L+ +++ ++e+++ + +++k+ +++  + +
     EGE27674.1 385 SARQNQIKSKIAELGAVNLAAAAELAELEARVSPMDEQINDITQSMKKLQDAIRAID 441
                    57999*********************************9998887777666544333 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  25.6   0.00063      0.56      18     116 ..      90     188 ..      77     227 .. 0.80
   2 ?    5.8   9.3     0.015        13       9      85 ..     221     297 ..     214     332 .. 0.77
   3 ?    5.7   0.6     0.015        14      64     100 ..     405     441 ..     366     462 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00063
  CENP-F_leu_zip  18 kadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenllee 112
                     + + L+d  + Le  le  ++++ +v +   +sk e+e++ ++++  +++l++le+ L+ l+   ++ +   +   ++ + L+  nss++n l+e
      EGE27674.1  90 RLEVLEDELNTLEDSLEKDQKQLKQVLTRLQSSKIELEEITAQKNVVTQQLHQLEQGLTMLTAKLDSEKARRESIDSQLKRLDDENSSIKNELQE 184
                     5578*********************************************************9777777777777788888888888888888888 PP

  CENP-F_leu_zip 113 kEqe 116
                     + ++
      EGE27674.1 185 LNMQ 188
                     7766 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.015
  CENP-F_leu_zip   9 lekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeL 85 
                       kLK  +     L+ k   L + +  +e+ +e ++  a + +a +et k+  +el+++l  le  ++a +    eL
      EGE27674.1 221 VAKLKTQNDTYQALQIKLGTLTQAKTHAERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLEEAFKAAKAVSHEL 297
                     56899999999999999999999999999999999999999999999999999999999999999888887444433 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.015
  CENP-F_leu_zip  64 laeelreleldLvalrsekeeLekelqkkqervseLe 100
                      a+el ele+ ++ + ++ ++++++++k q+ +   +
      EGE27674.1 405 AAAELAELEARVSPMDEQINDITQSMKKLQDAIRAID 441
                     3444555555555555555555555555555544443 PP

>> Tnp_22_trimer  L1 transposable element trimerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.48   4.3e+02       7      25 ..      89     107 ..      87     121 .. 0.62
   2 ?    9.6   0.2   0.00094      0.85       4      26 ..     411     433 ..     409     442 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.48
                    HHHHHHHHHHHHHHHHHHH CS
  Tnp_22_trimer   7 ERvSaaEDeieeidrevKe 25 
                    ER    EDe++ ++     
     EGE27674.1  89 ERLEVLEDELNTLEDSLEK 107
                    6777778888877655433 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00094
                    HHHHHHHHHHHHHHHHHHHHHHH CS
  Tnp_22_trimer   4 elEERvSaaEDeieeidrevKer 26 
                    elE RvS +  +i++i +  K  
     EGE27674.1 411 ELEARVSPMDEQINDITQSMKKL 433
                    9***************9988865 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  20.2   0.00026      0.24       2     153 ..      90     241 ..      89     244 .. 0.93
   2 ?    8.2   8.7    0.0016       1.4     104     201 ..     241     338 ..     231     351 .. 0.84
   3 ?    4.2   0.3     0.027        24      11      65 ..     316     369 ..     306     380 .. 0.76
   4 ?    4.6   2.4      0.02        18      11      78 ..     382     445 ..     368     458 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
  Tropomyosin   2 klkqveeeldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaadeserarKvlEnrelkdeekleelea 99 
                  +l+ +e+el++ e++lek +k+l++   + ++ + E + ++ + + + ++l + e+ l+  ++kL+  + + +  +  +K l + + +  + l+el++
   EGE27674.1  90 RLEVLEDELNTLEDSLEKDQKQLKQVLTRLQSSKIELEEITAQKNVVTQQLHQLEQGLTMLTAKLDSEKARRESIDSQLKRLDDENSSIKNELQELNM 187
                  78899***********************************************************9876666666699********************* PP

  Tropomyosin 100 qlkeakeiaeeadrkyeEvarklvvvesdLeraeeraeaaeskiveLeeeLkvv 153
                  q++       e + k+e +++ ++v +  +++a ++ +++    + L+ +L + 
   EGE27674.1 188 QIETCDFGLRELEPKVEQANQAMAVQTVRIDEAVAKLKTQNDTYQALQIKLGTL 241
                  ***************************************999999998777665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0016
  Tropomyosin 104 akeiaeeadrkyeEvarklvvvesdLeraeeraeaaeskiveLeeeLkvvgnnlksLevseekaseredeyeeeirtLeekLkeaeeRaeeAErsvqk 201
                   ++ +  a+r +e ++     +++d+e +++ +++  +k   Lee +k +++   +L+++++++    ++ + +  +L+e L ea ++   A  ++++
   EGE27674.1 241 LTQAKTHAERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLEEAFKAAKAVSHELKIASDEYELAAKAQQIAQSQLQETLTEAHTKFATAQATLAQ 338
                  55566667777777777778899*****************************************999999999999**********999888766655 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.027
  Tropomyosin  11 deaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealek 65 
                   + +e l++a++k + a+++ ++  a+ a  + r+q +  el r +e  +   +k
   EGE27674.1 316 SQLQETLTEAHTKFATAQATLAQISADTAVGESRVQDIGGELMRLDESFNL-ASK 369
                  567899999999999999999999999999999999999999888887765.344 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.02
  Tropomyosin  11 deaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaadeser 78 
                   + + r +++k+k++e  +    a aE a l+ r++ ++e+++     ++++++kL++a +a de+ +
   EGE27674.1 382 TDNSARQNQIKSKIAELGAVNLAAAAELAELEARVSPMDEQIND----ITQSMKKLQDAIRAIDEKTK 445
                  56677889999999999999999999999999999999998864....45556667777777777654 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   4.8      0.31   2.7e+02       1      31 [.      90     120 ..      87     140 .. 0.77
   2 ?    1.0   0.2      0.66   5.9e+02       8      40 ..     118     150 ..     116     152 .. 0.82
   3 ?    3.6   0.2     0.098        88       3      35 ..     141     173 ..     139     177 .. 0.92
   4 ?    7.6   1.5    0.0057       5.1      11      37 ..     163     189 ..     153     199 .. 0.69
   5 ?    3.7   0.9     0.089        80       5      36 ..     178     209 ..     175     226 .. 0.82
   6 ?    3.5   0.2       0.1        92      11      38 ..     261     288 ..     252     291 .. 0.80
   7 ?    1.6   0.0      0.42   3.8e+02       5      30 ..     318     343 ..     316     360 .. 0.83
   8 ?    8.9   0.6    0.0021       1.9       3      40 ..     410     447 ..     408     461 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.31
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksve 31 
                 r++ lE +l+ l+ +le  +k+++++ + ++
  EGE27674.1  90 RLEVLEDELNTLEDSLEKDQKQLKQVLTRLQ 120
                 6777899999999888888888888766655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.66
   FlaC_arch   8 klsklsteletvkkeneelsksveelkenVkdl 40 
                 +l++ ++ele + ++ + + +++++l++   +l
  EGE27674.1 118 RLQSSKIELEEITAQKNVVTQQLHQLEQGLTML 150
                 567788899999999999999999999977665 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.098
   FlaC_arch   3 delEnklsklsteletvkkeneelsksveelke 35 
                  +lE+ l  l  +l++ k+  e++ +++++l++
  EGE27674.1 141 HQLEQGLTMLTAKLDSEKARRESIDSQLKRLDD 173
                 689**************************9997 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0057
   FlaC_arch  11 klsteletvkkeneelsksveelkenV 37 
                 +++++l+ + +en++++++++el+ ++
  EGE27674.1 163 SIDSQLKRLDDENSSIKNELQELNMQI 189
                 566666666666666666666666555 PP

  == domain 5  score: 3.7 bits;  conditional E-value: 0.089
   FlaC_arch   5 lEnklsklsteletvkkeneelsksveelken 36 
                 + n+l++l +++et    + el+ +ve+ ++ 
  EGE27674.1 178 IKNELQELNMQIETCDFGLRELEPKVEQANQA 209
                 77999999999999999999999999988875 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.1
   FlaC_arch  11 klsteletvkkeneelsksveelkenVk 38 
                 +++  +et k++++els+++  l+e +k
  EGE27674.1 261 QTQADIETTKSTQQELSQKLPVLEEAFK 288
                 344589*************999998765 PP

  == domain 7  score: 1.6 bits;  conditional E-value: 0.42
   FlaC_arch   5 lEnklsklsteletvkkeneelsksv 30 
                 l++ l +  t+++t+++++ ++s + 
  EGE27674.1 318 LQETLTEAHTKFATAQATLAQISADT 343
                 788999999*************9875 PP

  == domain 8  score: 8.9 bits;  conditional E-value: 0.0021
   FlaC_arch   3 delEnklsklsteletvkkeneelsksveelkenVkdl 40 
                  elE ++s ++ +++ + +++++l++ +  ++e+ k l
  EGE27674.1 410 AELEARVSPMDEQINDITQSMKKLQDAIRAIDEKTKTL 447
                 59******************************998776 PP

>> Myosin_tail_1  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6  26.0   3.1e-06    0.0028     437     571 ..      86     220 ..      74     250 .. 0.86
   2 ?   -2.3  15.9       0.8   7.2e+02     211     345 ..     197     331 ..     196     347 .. 0.80
   3 ?    4.7   2.1    0.0061       5.5     944    1009 ..     386     449 ..     359     460 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.1e-06
  Myosin_tail_1 437 klqaelesvsslleeaegksiklskdvsslesqlqDtqellqeetrqkLalssrlrqleeeknalkeqleeeeeakknvekqlstlqaqlsdlkkk 532
                    k    le ++  l+  e    k +k+++++  +lq  +  l+e t qk  ++++l+qle+  + l+ +l+ e+  +++++ ql+ l+ + s +k  
     EGE27674.1  86 KHLERLEVLEDELNTLEDSLEKDQKQLKQVLTRLQSSKIELEEITAQKNVVTQQLHQLEQGLTMLTAKLDSEKARRESIDSQLKRLDDENSSIKNE 181
                    4455799999************************************************************************************** PP

  Myosin_tail_1 533 leeeasavealeeakkrlqrelealtqrleekaaaydkl 571
                    l+e +  +e+ + + + l+  +e+++q +  ++  +d  
     EGE27674.1 182 LQELNMQIETCDFGLRELEPKVEQANQAMAVQTVRIDEA 220
                    ***************************999888766642 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.8
  Myosin_tail_1 211 RklegessdlqeqiadlqaqieelraqlakkeeelqaalarleeeaaqknaalkklreleaqlaelqedlesekaaRakaekqrrdLgeeLealkt 306
                    R le  + + ++ +a +  +i+e  a+l  +++  qa++ +l   +++k++a + l  ++   ++ q d+e+ k++++   ++   L+e  +a k+
     EGE27674.1 197 RELEPKVEQANQAMAVQTVRIDEAVAKLKTQNDTYQALQIKLGTLTQAKTHAERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLEEAFKAAKA 292
                    677777777888888888899999999999999999999999999999999999999999999999999999999999999999999999999886 PP

  Myosin_tail_1 307 eLedtLDstaaqqeLrskReqev.aeLkkaleeearshea 345
                     +   L   +   eL +k  q   ++L+ +l e ++++ +
     EGE27674.1 293 -VSHELKIASDEYELAAKAQQIAqSQLQETLTEAHTKFAT 331
                    .566788888888888887664315788888776655544 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0061
  Myosin_tail_1  944 erqnkelkakLqelegavkskykssiaaleakiaqleeqleqeskerqaaaklvrrtekklkevll 1009
                      rqn ++k+k+ el gav     + +a lea+++ ++eq++  ++  ++ + ++r  + k k ++l
     EGE27674.1  386 ARQN-QIKSKIAEL-GAVNLAAAAELAELEARVSPMDEQINDITQSMKKLQDAIRAIDEKTKTLFL 449 
                     4555.477888887.566777778888888888888888887777777777777777777777665 PP

>> DUF4806  Domain of unknown function (DUF4806)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.5    0.0023         2      12      42 ..      95     125 ..      94     144 .. 0.81
   2 ?    2.2   0.1      0.25   2.3e+02      12      41 ..     406     435 ..     402     460 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0023
     DUF4806  12 eeelerLEaavrtdekirqqyvnyLrkikgk 42 
                 e+el++LE+++++d+k  +q++ +L++ k +
  EGE27674.1  95 EDELNTLEDSLEKDQKQLKQVLTRLQSSKIE 125
                 79***********************998864 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.25
     DUF4806  12 eeelerLEaavrtdekirqqyvnyLrkikg 41 
                   el +LEa+v+  ++  ++++++++k   
  EGE27674.1 406 AAELAELEARVSPMDEQINDITQSMKKLQD 435
                 67999*******888888888888877554 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.0      0.02        18      67     104 ..      82     119 ..      71     122 .. 0.87
   2 ?   11.4   7.1   0.00031      0.28      40     104 ..     121     189 ..     117     191 .. 0.93
   3 ?    5.8   6.0     0.018        16      24      96 ..     217     293 ..     196     300 .. 0.82
   4 ?    1.3   7.9      0.45     4e+02      30     101 ..     250     322 ..     242     344 .. 0.83
   5 ?    9.3   2.8    0.0014       1.3      40      99 ..     376     439 ..     360     451 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.02
                   S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS CS
  Seryl_tRNA_N  67 edaeeliaevkelkeelkaleaelkeleaeleklllai 104
                    d+++ +++ + l +el++le+ l++ +++l+++l+++
    EGE27674.1  82 SDRKKHLERLEVLEDELNTLEDSLEKDQKQLKQVLTRL 119
                   57888999999**********************99886 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00031
                   HHHHHHHHHHHHHHHHHHHCCCCCCTT....S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS CS
  Seryl_tRNA_N  40 elqveleelqaerNelskeIgkakkkk....edaeeliaevkelkeelkaleaelkeleaeleklllai 104
                   + ++elee+ a++N ++++ +++ +      ++ ++ +a+ +++  +lk+l++e + +++el++l ++i
    EGE27674.1 121 SSKIELEEITAQKNVVTQQLHQLEQGLtmltAKLDSEKARRESIDSQLKRLDDENSSIKNELQELNMQI 189
                   6689*******************9865999999********************************9987 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.018
                   CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT....S-TCCCCCCCHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  24 dkadvdelleldekrrelqveleelqaerNelskeIgkakkkk....edaeeliaevkelkeelkaleaelkeleae 96 
                    ++ v++l   ++  ++lq++l  l + +  + +  ++ak +     +d+e  +   +el+++l  le++ k+++a 
    EGE27674.1 217 IDEAVAKLKTQNDTYQALQIKLGTLTQAKTHAERLLEMAKHSAsqtqADIETTKSTQQELSQKLPVLEEAFKAAKAV 293
                   5688999***************************9999999886677777777777778888888888888877765 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.45
                   HHHHHHHH.HHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  30 elleldek.rrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekll 101
                   +lle+ ++   ++q+++e  ++ + els++   + ++ + a+++ +e k  ++e + + ++++ ++++l++ l
    EGE27674.1 250 RLLEMAKHsASQTQADIETTKSTQQELSQKLPVLEEAFKAAKAVSHELKIASDEYELAAKAQQIAQSQLQETL 322
                   5555554314678999999999999999999999999999999999999999999999999999999988876 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.0014
                   HHHHHHHHHHHHHHHHHHHCCCCCCTT....S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  40 elqveleelqaerNelskeIgkakkkk....edaeeliaevkelkeelkaleaelkeleaelek 99 
                   + ++ + +  a++N++  +I+++ + +    ++ +el a+v+ + e+++++++ +k+l++++ +
    EGE27674.1 376 NPNQNFTDNSARQNQIKSKIAELGAVNlaaaAELAELEARVSPMDEQINDITQSMKKLQDAIRA 439
                   556677778899**********999998888777777788888888888888887777777654 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  26.4   0.00017      0.15      32     194 ..      85     246 ..      80     249 .. 0.95
   2 ?    0.7  11.8      0.32   2.9e+02      30     132 ..     233     335 ..     226     364 .. 0.77
   3 ?    6.9   3.3     0.004       3.6      22      87 ..     382     447 ..     367     466 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
         GAS  32 KeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfe 130
                 K+ +e+l+  e++ + + + ++++ k+lk+ L++++  + eL++  ++ +   q+l +l++ l++l+ +l + k   e+   +++++ +e   ++++ +
  EGE27674.1  85 KKHLERLEVLEDELNTLEDSLEKDQKQLKQVLTRLQSSKIELEEITAQKNVVTQQLHQLEQGLTMLTAKLDSEKARRESIDSQLKRLDDENSSIKNELQ 183
                 88889999999999999999******************************************************************************* PP

         GAS 131 aaiqevqqktglknllLekklkalqeelEkkeaqleevlaaanldpaalsavsekleevlesKn 194
                 +  +++ + +++    Le k+++ ++++  ++++++e++a+ + + ++++a++ kl  + ++K 
  EGE27674.1 184 ELNMQI-ETCDFGLRELEPKVEQANQAMAVQTVRIDEAVAKLKTQNDTYQALQIKLGTLTQAKT 246
                 *88888.579999999****************************************99999986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.32
         GAS  30 slKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykk 128
                  l  ++ +l + ++++e++l+ +++  ++ +  +++ +   +eL ++l   e+ +++ k++  +lk + +e++     +++ + ++++   e  +  ++
  EGE27674.1 233 ALQIKLGTLTQAKTHAERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLEEAFKAAKAVSHELKIASDEYELAAKAQQIAQSQLQETLTEAHTKFAT 331
                 566777788889999999999999999999999999999999999999999999999999999999888888877777777776665554444433333 PP

         GAS 129 feaa 132
                  +a+
  EGE27674.1 332 AQAT 335
                 3333 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.004
         GAS  22 rnNLelIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqsl 87 
                 ++N + +++ K++i+el + + ++  el+e++++ + + e+++  ++ +++L+ +++  +++ + l
  EGE27674.1 382 TDNSARQNQIKSKIAELGAVNLAAAAELAELEARVSPMDEQINDITQSMKKLQDAIRAIDEKTKTL 447
                 567777889999999999999999999999999999999999999999999999888777665554 PP

>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5  46.8     0.041        37      23     289 ..      85     374 ..      69     434 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.041
         MAD  23 lehkrarielekkasalkrqleeesdrnqelqkrikllekre.eekeealreqiElarlkkknlealnkkekek......esklaearevisalknela 114
                 ++h + +  le + ++l++ le+++++ +++++r++  + +  e  ++++  +  l++l +  +  + k+ +ek      +s+l+ + + +s++knel+
  EGE27674.1  85 KKHLERLEVLEDELNTLEDSLEKDQKQLKQVLTRLQSSKIELeEITAQKNVVTQQLHQLEQGLTMLTAKLDSEKarresiDSQLKRLDDENSSIKNELQ 183
                 445555667888999999999999999999999998765333133333333333333333322222333333331111126788999999********* PP

         MAD 115 elkrqiekqelelsekeseleelqerldllkkklseleqli.......qqlekkqkel...aeaeqrikeLefeiqsqed.dslivknsksel.aripe 201
                 el+ qie  +  l+e e ++e+ +++  ++  ++ e+  +        q l+ k  +l   +++ +r+ e+  + +sq++ d + +k+ ++el +++p 
  EGE27674.1 184 ELNMQIETCDFGLRELEPKVEQANQAMAVQTVRIDEAVAKLktqndtyQALQIKLGTLtqaKTHAERLLEMAKHSASQTQaDIETTKSTQQELsQKLPV 282
                 ***************************99999999987776677777788888876551116678899999999999988245668999****99**** PP

         MAD 202 lekelerlreenkklnelkenkelLkEevedlkkkLere.EkareelvkLelekekleqeLksWeklaqdtgL...nlrsPealsrkieqLq 289
                 le+  ++ ++  ++l+  +++ el     +  +++L+ +  +a+ + ++ +  + +++++    e+  qd g     l +  +l++k+  + 
  EGE27674.1 283 LEEAFKAAKAVSHELKIASDEYELAAKAQQIAQSQLQETlTEAHTKFATAQATLAQISADTAVGESRVQDIGGelmRLDESFNLASKLADFR 374
                 ****************9999999988888877888754325566666666666666666666666666665532234445555566655554 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0077       6.9      63      98 ..      79     114 ..      29     115 .. 0.75
   2 ?   -1.0   4.3       4.2   3.8e+03      65      93 ..     158     186 ..     119     192 .. 0.63
   3 ?    0.2   0.6       1.8   1.6e+03      63      94 ..     261     292 ..     230     297 .. 0.75
   4 ?    1.1   0.3      0.93   8.4e+02      66      98 ..     414     446 ..     389     447 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0077
     DUF5320  63 aaetaeaskeeekelLeeqaeaLeeeleaikkrlke 98 
                 +  +++++  e+ e+Le++ ++Le++le+ +k+lk+
  EGE27674.1  79 QFLSDRKKHLERLEVLEDELNTLEDSLEKDQKQLKQ 114
                 4556778888999********************997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4.2
     DUF5320  65 etaeaskeeekelLeeqaeaLeeeleaik 93 
                 +++++s +++ + L ++ +++++el++++
  EGE27674.1 158 KARRESIDSQLKRLDDENSSIKNELQELN 186
                 33444445555555555555555555555 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.8
     DUF5320  63 aaetaeaskeeekelLeeqaeaLeeeleaikk 94 
                 + +++ ++++++++ L ++  +Lee ++a k+
  EGE27674.1 261 QTQADIETTKSTQQELSQKLPVLEEAFKAAKA 292
                 34556677888888899999999999998876 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.93
     DUF5320  66 taeaskeeekelLeeqaeaLeeeleaikkrlke 98 
                 ++ +  +e+++ +++ ++ L++ + ai+++ k+
  EGE27674.1 414 ARVSPMDEQINDITQSMKKLQDAIRAIDEKTKT 446
                 445556777888888888888888888888776 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  12.2      0.03        26      52     122 ..      70     143 ..      67     145 .. 0.76
   2 ?   12.4  11.4   0.00016      0.14      38     133 ..     126     228 ..     125     241 .. 0.78
   3 ?    0.9  10.8      0.54   4.8e+02      52     137 ..     248     333 ..     238     353 .. 0.56
   4 ?    4.4   0.6     0.044        40      87     151 ..     405     455 ..     361     460 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.03
  Jnk-SapK_ap_N  52 leelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrele...lkaknaadqlsrl 122
                    l++l ++ +q+ +++++  e  +  e+el  +ed++e+++k+l++ +++l++ + ele   ++ + +++ql++l
     EGE27674.1  70 LSKLGDTSSQFLSDRKKHLERLEVLEDELNTLEDSLEKDQKQLKQVLTRLQSSKIELEeitAQKNVVTQQLHQL 143
                    56777888899998888899999999**************************9999993322222234444444 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00016
  Jnk-SapK_ap_N  38 LeslasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedq...weeerkelqekveqleeenrelelkaknaad....qlsrleeke 126
                    Le+++++++  +++l +l++ l+ L+ +++ ek+ r+  + +l +++d+   +++e +el+ ++e  +   rele k+++a++    q+ r+ e  
     EGE27674.1 126 LEEITAQKNVVTQQLHQLEQGLTMLTAKLDSEKARRESIDSQLKRLDDEnssIKNELQELNMQIETCDFGLRELEPKVEQANQamavQTVRIDEAV 221
                    99**************************************999999887222677888888899999999*****999988762222444555555 PP

  Jnk-SapK_ap_N 127 aelkkey 133
                    a+lk+++
     EGE27674.1 222 AKLKTQN 228
                    5444443 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.54
  Jnk-SapK_ap_N  52 leelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklh 137
                    +e+l e  ++  ++ +   e  k +++el ++  ++ee  k+ ++  ++l+   +e+el ak+++   s+l+e+ +e +++ ++++
     EGE27674.1 248 AERLLEMAKHSASQTQADIETTKSTQQELSQKLPVLEEAFKAAKAVSHELKIASDEYELAAKAQQIAQSQLQETLTEAHTKFATAQ 333
                    55555555555555555666666666666666666666666666666666655555555555555555555555554444443333 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.044
  Jnk-SapK_ap_N  87 weeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkklkelv 151
                                     e  ele++++ +++q++++ ++ ++l+    +  e+ + l+ +  e v
     EGE27674.1 405 A--------------AAELAELEARVSPMDEQINDITQSMKKLQDAIRAIDEKTKTLFLTALEAV 455
                    3..............34455555566666666666666666666666665556666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2614  (0.145797); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                       156  (0.00870099); expected 17.9 (0.001)
Passed Fwd filter:                       104  (0.00580066); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 2.01u 0.36s 00:00:02.36 Elapsed: 00:00:00.59
# Mc/sec: 3083.79
//
Query:       EGE27675.1  [L=271]
Description: 30S ribosomal protein S2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-93  311.1   0.1    3.4e-93  310.8   0.1    1.1  1  Ribosomal_S2  Ribosomal protein S2
  ------ inclusion threshold ------
       0.14   12.0   1.1       0.17   11.7   0.2    1.5  2  DEAD_assoc    DEAD/H associated


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.8   0.1   3.7e-97   3.4e-93       1     215 []      14     229 ..      14     229 .. 0.99

  Alignments for each domain:
  == domain 1  score: 310.8 bits;  conditional E-value: 3.7e-97
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIygerngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNfk 97 
                   LLeag+hfGhqtr wnpkm++yI+g+rn ihii+le+t++++++a+ +v++ aa ++kilfvgtk++a  +++e+a+ra+++yv +rWlgG+LTN+k
    EGE27675.1  14 LLEAGAHFGHQTRFWNPKMSQYIFGARNRIHIINLEHTVKQFNEALTFVNKQAAARNKILFVGTKRAAGAVIREQAQRAGMPYVDHRWLGGMLTNWK 110
                   8************************************************************************************************ PP

  Ribosomal_S2  98 tikksikklkeleeleedgeld.ltkkealklkkekekleknlggikkmkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpa 193
                   t+++si +lkele+++edg++  ltk+eal+ ++++ekle+ lggik+m  lPd+++v+d+++e ia+kEak+lgipvi+ivDtn++pd+vdy+I a
    EGE27675.1 111 TLRQSITRLKELEKQAEDGTFAkLTKREALERTRQMEKLERALGGIKEMGGLPDALFVVDVDHEAIAIKEAKNLGIPVIGIVDTNSNPDNVDYVIAA 207
                   *********************77************************************************************************** PP

  Ribosomal_S2 194 Nddsirsiklilgvladaieeg 215
                   Ndd+ir+i+l+++++adai+ g
    EGE27675.1 208 NDDAIRAISLYVTAMADAIIAG 229
                   *******************986 PP

>> DEAD_assoc  DEAD/H associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.9e-05      0.17      73     174 ..      54     158 ..      34     160 .. 0.81
   2 ?   -2.8   0.0      0.51   4.6e+03      50      65 ..     202     221 ..     199     263 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
  DEAD_assoc  73 lldellellspdeleedleaalnaselfkrrFrevAarall..lp.rrypgkrkplwqqrlraaqLldvareypdfpllleavrevledqlDlerlael 168
                 +++e+l++++++ +++     ++    + +  re A+ra++  +  r+  g  ++ +  r++  +L +  ++ +d    + + re+le+   +e+l+++
  EGE27675.1  54 QFNEALTFVNKQAAARNKILFVGTKRAAGAVIREQAQRAGMpyVDhRWLGGMLTNWKTLRQSITRLKELEKQAEDGTFAKLTKREALERTRQMEKLERA 152
                 56667777777777777777788888899999********9444325566777777789**************************************** PP

  DEAD_assoc 169 lrriaa 174
                 l  i++
  EGE27675.1 153 LGGIKE 158
                 *99975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.51
  DEAD_assoc  50 dvqvaanDdgivlll....p 65 
                 d  +aanDd+i  ++    +
  EGE27675.1 202 DYVIAANDDAIRAISlyvtA 221
                 55677888877654443321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2044.80
//
Query:       EGE27676.1  [L=292]
Description: elongation factor Ts [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-67  227.1   3.5    2.2e-67  226.7   3.5    1.2  1  EF_TS          Elongation factor TS
     0.0061   16.9   0.3     0.0061   16.9   0.3    2.3  2  Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
  ------ inclusion threshold ------
      0.034   13.8   0.0      0.066   12.9   0.0    1.5  1  TAP_C          TAP C-terminal domain
      0.056   13.3   0.1       0.33   10.7   0.0    1.7  2  TFCD_C         Tubulin folding cofactor D C terminal
      0.074   13.1   1.1       0.62   10.1   0.1    2.4  2  HOIP-UBA       HOIP UBA domain pair


Domain annotation for each model (and alignments):
>> EF_TS  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7   3.5   6.3e-71   2.2e-67       1     208 []      71     270 ..      71     270 .. 0.98

  Alignments for each domain:
  == domain 1  score: 226.7 bits;  conditional E-value: 6.3e-71
       EF_TS   1 avivevnsETDFVAknekFqelvkkvaeaaleekakdleellalkled.etveealkekiakigEkielrrfakleaekevvasYiHgngrigvlvale 98 
                 a ++evn++TDFVAk+e+F+++++kva+ ale++++d++++ +l+++d +tveea+ ++++kigE+i++rr++++e+  + +a+Y Hg  rigv+v++e
  EGE27676.1  71 ALLLEVNCQTDFVAKDENFTAFANKVAKLALENNTTDVAAIAQLPYGDgSTVEEARVALVQKIGENIQVRRAEVIEG--ANLAAYRHG-LRIGVVVSIE 166
                 6799*************************************************************************..6669*****.********** PP

       EF_TS  99 gksdealkelakqiAmhiaAmnPqylsedevdaevlekekeilkeqakeegkpekiiekiveGrlekflkevcLleQeyvkddkktVeqvlkeaskelk 197
                 g s+    e+ k +Am++aA nP +++e++v+ ++l++ek+i++++ake+gkpe++iek+++G l+k+l+ev+L++Q+yv+d++k+V +vlk++++  +
  EGE27676.1 167 GGSE----EVGKAVAMQVAAFNPLAVNEADVPVDILAREKDIIEAKAKESGKPEAVIEKMITGGLQKYLNEVTLVNQPYVMDNDKKVGDVLKSENA--T 259
                 **99....8***************************************************************************************..* PP

       EF_TS 198 vvkfvrfevGe 208
                 vv+f+r+evGe
  EGE27676.1 260 VVSFKRLEVGE 270
                 **********8 PP

>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   1.7e-06    0.0061      14      45 ..       7      38 ..       3      61 .. 0.80
   2 ?   -3.6   0.2       4.4   1.6e+04      28      43 ..     205     220 ..     201     222 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.7e-06
                   HHHHHHHHHH---HHHHHHHHTTTTSTEEEEE CS
  Ribosomal_L12 14 aVIKaVreitglgLkeaKdlVeaapkvvkegv 45
                   + +K++r+ tglg++e K+  e+a+ +++ ++
     EGE27676.1  7 KLVKELRDRTGLGMMECKKALEEAGGDIELAI 38
                   679*********************98887554 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.4
                    HHHHHHHTTTTSTEEE CS
  Ribosomal_L12  28 keaKdlVeaapkvvke 43 
                     eaK+   + p++v e
     EGE27676.1 205 IEAKAKESGKPEAVIE 220
                    4666655555666555 PP

>> TAP_C  TAP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.8e-05     0.066       2      38 ..       8      44 ..       7      58 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
                HHHHHHHHH-B-HHHHHHHHSSTTT-HHHHHHHHHHH CS
       TAP_C  2 mvqafstqtgMnlewsqkcLeqnnWdyerAlqvFeel 38
                +v+++  +tg+ +  ++k Le+++ d+e A+ +  ++
  EGE27676.1  8 LVKELRDRTGLGMMECKKALEEAGGDIELAIDNLRKS 44
                89*****************************999876 PP

>> TFCD_C  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.51   1.8e+03     152     178 ..      72     101 ..      70     113 .. 0.70
   2 ?   10.7   0.0   9.3e-05      0.33      75     103 ..     149     177 ..     137     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.51
      TFCD_C 152 lLlesgvleelaeees...sflekllkllq 178
                 lLle ++  ++  +++   +f+ k++kl+ 
  EGE27676.1  72 LLLEVNCQTDFVAKDEnftAFANKVAKLAL 101
                 677777777776666657777888877754 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.3e-05
      TFCD_C  75 qlpeyresvleGlvvSvGglteslvkass 103
                 +l++yr+ +  G+vvS+ g++e + ka +
  EGE27676.1 149 NLAAYRHGLRIGVVVSIEGGSEEVGKAVA 177
                 789**********************9976 PP

>> HOIP-UBA  HOIP UBA domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00017      0.62     104     138 ..       9      43 ..       2      50 .. 0.68
   2 ?    1.0   0.2       0.1   3.7e+02      61     136 ..      52     129 ..      43     141 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00017
    HOIP-UBA 104 vkelaslgffdreevveaLrqsgGdvegAlveLqr 138
                 vkel+++      e+ +aL++ gGd+e A+ +L +
  EGE27676.1   9 VKELRDRTGLGMMECKKALEEAGGDIELAIDNLRK 43 
                 66666666666677777777777777777777765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.1
    HOIP-UBA  61 eqkekkenevgklsraEakealleagGdve.kAvkqclreRrkKvkelaslgffdreevveaL.rqsgGdvegAlveL 136
                 +  + + +++  + + E k  lle +  ++  A  +  +   +Kv +la  ++ +  +++++L +  g  ve+A v L
  EGE27676.1  52 KAGNIAADGAIIIAQGEGKALLLEVNCQTDfVAKDENFTAFANKVAKLALENNTTDVAAIAQLpYGDGSTVEEARVAL 129
                 444555566666666666666666666665235566666667777777766664433333333134444555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2134.35
//
Query:       EGE27677.1  [L=215]
Description: orotate phosphoribosyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-15   56.9   0.0    2.8e-15   56.2   0.0    1.3  1  Pribosyltran  Phosphoribosyl transferase domain
     0.0052   16.5   0.3     0.0065   16.2   0.3    1.2  1  MctB          Copper transport outer membrane protein, MctB
  ------ inclusion threshold ------
      0.039   14.4   0.1        1.8    9.1   0.0    2.3  2  Toprim_2      Toprim-like
       0.06   10.6   0.0      0.074   10.3   0.0    1.1  1  DUF5587       Family of unknown function (DUF5587)


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   6.2e-19   2.8e-15      18     134 ..      53     166 ..      38     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 6.2e-19
                   TTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHS......TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHH CS
  Pribosyltran  18 laaeileeyngkpdvvvgiargGvpfakiladeL......evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaale 108
                   +a  + +++n+   v++g a++G+pf+ ++a+ L      +++  y rk+ ++++ ++             +d+ gk+V +VDD+++ G+++++++ 
    EGE27677.1  53 YADTLAKHANQDDLVIFGAAYKGIPFVAATAQVLwrehqiNAEWGYNRKEAKNHGEGGML---------VGADLNGKSVWVVDDVMTAGTAMREVIT 140
                   33344444677799************************99999*********99998888.........689************************* PP

                   HHHCC-BSEEEEEEEEE-HHHHHHHH CS
  Pribosyltran 109 lLkekgpeevriavlvdkpateeevd 134
                   lL ++g+ + +i+v +d++++   ++
    EGE27677.1 141 LLGKAGASVAGIIVALDRKEKGQSDR 166
                   ******************99987776 PP

>> MctB  Copper transport outer membrane protein, MctB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   1.4e-06    0.0065      73     138 ..     109     175 ..      83     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.4e-06
        MctB  73 aprlvagrLtgrsVavvttpdadeedvdavtelleqAGAtvtgtvt.ltdkfvdpdeadklrslaaq 138
                 +  lv   L+g+sV vv    ++   + +v +ll +AGA+v+g +  l  k   +++++ +++la++
  EGE27677.1 109 GGMLVGADLNGKSVWVVDDVMTAGTAMREVITLLGKAGASVAGIIVaLDRKEKGQSDRSAIQELAES 175
                 5678999************99**********************875144455555566666666666 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.025   1.1e+02       1      18 [.      48      65 ..      48      94 .. 0.74
   2 ?    9.1   0.0   0.00039       1.8      24      73 ..     128     178 ..     120     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.025
    Toprim_2  1 vvfEgaiDalSlaqlgik 18
                v++Eg+ D l+ ++ + +
  EGE27677.1 48 VLAEGYADTLAKHANQDD 65
                699********9997663 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00039
    Toprim_2  24 valgGtalteaalkllery.pe.kkvvlalDnDkaGrkaakrlaellreagv 73 
                 v ++Gt + ++ + ll +  ++ + +++alD  ++G+   + ++el+++ +v
  EGE27677.1 128 VMTAGT-AMREVITLLGKAgASvAGIIVALDRKEKGQSDRSAIQELAESLQV 178
                 678999.778899998888544478************999999999876664 PP

>> DUF5587  Family of unknown function (DUF5587)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.7e-05     0.074     854     913 ..      15      72 ..       8      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 1.7e-05
     DUF5587 854 rstlldsfGGflleiqipyvffaseGllntpeilqllesnynitlverccseslklfGst 913
                 ++ l   fG f l+      +f   Gll t e+l +l   y  tl + +  + l +fG++
  EGE27677.1  15 NHVL--CFGEFTLKSGRKSPYFFNAGLLSTGELLSVLAEGYADTLAKHANQDDLVIFGAA 72 
                 3333..69****9986555556677*********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1707.69
//
Query:       EGE27678.1  [L=243]
Description: glutathione synthetase, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-46  156.8   0.0    4.4e-46  156.5   0.0    1.1  1  GSH-S_ATP       Prokaryotic glutathione synthetase, ATP-grasp
    2.1e-38  131.1   0.0    3.2e-38  130.5   0.0    1.3  1  GSH-S_N         Prokaryotic glutathione synthetase, N-termina
      1e-05   24.9   0.0    1.5e-05   24.4   0.0    1.3  1  ATPgrasp_YheCD  YheC/D like ATP-grasp
      2e-05   24.3   0.0    3.3e-05   23.6   0.0    1.4  1  RimK            RimK-like ATP-grasp domain
    0.00097   18.5   0.0     0.0021   17.4   0.0    1.5  2  ATPgrasp_ST     Sugar-transfer associated ATP-grasp
  ------ inclusion threshold ------
      0.035   14.1   0.0      0.048   13.7   0.0    1.2  1  ATP-grasp_3     ATP-grasp domain


Domain annotation for each model (and alignments):
>> GSH-S_ATP  Prokaryotic glutathione synthetase, ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   1.5e-49   4.4e-46       1     118 [.     126     243 .]     126     243 .] 0.99

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 1.5e-49
                 TTGGGGGGCCCS--EEEES-HHHHHHHHHHHSSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEE CS
   GSH-S_ATP   1 eKlaalsfpelipktlvskdkeeirafleeqgdvilKPldgkgGegvfrvkksdpnlksilellteegkepviaqrylpeikeGDkRillvdGepigya 99 
                 eKl+a++f+el+++t+v++++ +i+af++e++dvi+KPldg+gG+g+fr+++++pn+++ le+lt++g+ p++aq+y+p+i eGDkR+l+v G+p++y+
  EGE27678.1 126 EKLFATQFSELMSPTIVTNKQMHIQAFITEHQDVIVKPLDGMGGMGIFRLTADSPNIGATLEMLTQMGELPIMAQKYIPAIVEGDKRVLIVGGKPVDYC 224
                 8************************************************************************************************** PP

                 EEEE--SS-S---GGGTSC CS
   GSH-S_ATP 100 laRvpaegevRsnlaaggr 118
                 laR+p++ge+R+nlaaggr
  EGE27678.1 225 LARIPSQGETRGNLAAGGR 243
                 *****************96 PP

>> GSH-S_N  Prokaryotic glutathione synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.0   1.1e-41   3.2e-38       1     118 [.       4     121 ..       4     122 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 1.1e-41
     GSH-S_N   1 lklafvmdplesikikkDttfalmleaqarghevfvleaadLslregkatararkvevkedkedwyelgeeeelaleeldvvlmRkDPPfdmeylyaty 99 
                 l++++vmd+++++ +kkDtt+a+m +a +rghe+++++++dL l++g++ + a +++v ++ e++yelge +++  +++dv+lmRkDPPfdm++lya +
  EGE27678.1   4 LRFLIVMDDITTVSYKKDTTLAMMWAADERGHELYYCQIHDLWLSQGTLNVDAWPLQVFKNPENFYELGEMATYCATDFDVILMRKDPPFDMKFLYALH 102
                 6899*******************************************************99************************************** PP

     GSH-S_N 100 lLelaeregvlvvNdpral 118
                 lL++a+++gv v+Ndp a+
  EGE27678.1 103 LLDYAKQAGVWVINDPLAV 121
                 ****************876 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     5e-09   1.5e-05      24      72 ..     132     180 ..     115     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 5e-09
  ATPgrasp_YheCD  24 elrpyLPetellesledleemlekyksvylKpanGskGkgilriekeek 72 
                     ++++++ +t+  +++  ++++++++++v++Kp +G++G gi+r++ ++ 
      EGE27678.1 132 QFSELMSPTIVTNKQMHIQAFITEHQDVIVKPLDGMGGMGIFRLTADSP 180
                     68899999************************************98554 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.1e-08   3.3e-05      23     120 ..     142     242 ..     124     243 .] 0.84

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.1e-08
                 EESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEE.EE-SHHHHHHHHHHGGG-....-EEEEE--SS-SEEEEEEEETTEEEE.EEEEE--SSS---- CS
        RimK  23 lardeedaekliekiklrfPvvvKsvegsqGikvv.lakkeqklkqvlealkea....ilvqeyieeaenediRvlvvddevva.alrrvskeGdFRsn 115
                 +++++ +++++i +      v+vK + g  G++++ l+ +  ++  +le l++     i+ q+yi    + d Rvl+v+++ v   l r+  +G+ R n
  EGE27678.1 142 VTNKQMHIQAFITEH---QDVIVKPLDGMGGMGIFrLTADSPNIGATLEMLTQMgelpIMAQKYIPAIVEGDKRVLIVGGKPVDyCLARIPSQGETRGN 237
                 455666778888777...48**************9889999999999999665322227********************99775389************ PP

                 TTTT- CS
        RimK 116 lhrGg 120
                 l  Gg
  EGE27678.1 238 LAAGG 242
                 *9997 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.9e-07    0.0021      47      82 ..     144     178 ..     108     195 .. 0.81
   2 ?   -2.3   0.0      0.67     2e+03     143     181 ..     210     242 ..     199     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.9e-07
  ATPgrasp_ST  47 aeiseleafvkeleegvviKpakgsgGkGilviter 82 
                  ++  +++af+ e+ ++v++Kp +g+gG Gi  +t++
   EGE27678.1 144 NKQMHIQAFITEH-QDVIVKPLDGMGGMGIFRLTAD 178
                  4556899******.77**************988774 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.67
  ATPgrasp_ST 143 tiRvitflkdkkvevmlamlRlgtkaskvDgkaNlhqGg 181
                  + Rv ++    + +v + + R++ +++++    Nl++Gg
   EGE27678.1 210 DKRVLIV---GGKPVDYCLARIPSQGETRG---NLAAGG 242
                  5588888...66677777999999999666...999997 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.6e-05     0.048      12      70 ..     137     203 ..     124     212 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
                  TTT.S---....-EESS--SSSEEEEESS-------B--SS-.-TTE..............EEEE-- CS
  ATP-grasp_3  12 keagvkvPtkleaeeleeeekklvvKprdGaggesvrvveek.eeaeaaieeve.......lvqefi 70 
                  +   + + ++++ + +  e + ++vKp dG+gg +++   ++ ++  a++e+++       ++q++i
   EGE27678.1 137 MSPTIVTNKQMHIQAFITEHQDVIVKPLDGMGGMGIFRLTADsPNIGATLEMLTqmgelpiMAQKYI 203
                  33334444667777777889**************998665540333344444335555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1822.64
//
Query:       EGE27679.1  [L=134]
Description: translation elongation factor Tu [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-35  120.4   0.0    5.6e-35  120.0   0.0    1.2  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    1.2e-05   25.6   0.0    7.8e-05   23.0   0.0    2.1  2  GTP_EFTU_D2  Elongation factor Tu domain 2


Domain annotation for each model (and alignments):
>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.0   6.3e-39   5.6e-35       1     111 [.      38     132 ..      38     133 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 6.3e-39
                  --EEECCEEEEEEESSS.....SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEE CS
  GTP_EFTU_D3   1 sikphtkfeAqvyileke...rhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFa 95 
                  si+phtkf+A+vy+l+ke   rhtp+ +gYrp++y+rt+dvtg  ++L       +e++     e+v+pGdnv+++veli+pia++kg       rFa
   EGE27679.1  38 SITPHTKFDAEVYVLSKEeggRHTPFLNGYRPQFYFRTTDVTG-AITL-------QEGT-----EMVMPGDNVEMSVELIHPIAMDKGL------RFA 116
                  699****************************************.9999.......7778.....9************************......*** PP

                  EECTTCEEEEEEEEEE CS
  GTP_EFTU_D3  96 iReggrTvaaGvvtei 111
                  iReggrTv+aGvv ++
   EGE27679.1 117 IREGGRTVGAGVVANV 132
                  *************998 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   8.7e-09   7.8e-05      40      74 .]       1      34 [.       1      34 [. 0.96
   2 ?    0.7   0.0     0.077   6.9e+02      40      54 ..      83      97 ..      46     130 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 8.7e-09
                 EETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2 40 tfhededeavaganaGvivaikgledaiivGdtlt 74
                 +f++ +de +ag+n+G+++++ + e+ +++G++l+
   EGE27679.1  1 MFRKLLDEGRAGENCGILLRGTKREE-VQRGQVLA 34
                 8999**********************.******95 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.077
                 EETEEESEEETTSEE CS
  GTP_EFTU_D2 40 tfhededeavagana 54
                 t +e  + +++g+n+
   EGE27679.1 83 TLQEGTEMVMPGDNV 97
                 444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 974.51
//
Query:       EGE27680.1  [L=157]
Description: preprotein translocase subunit SecE [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-17   63.5   2.5    1.2e-17   63.5   2.5    2.5  3  SecE        SecE/Sec61-gamma subunits of protein translocatio
      0.005   17.1   5.2     0.0099   16.1   0.1    2.2  2  DUF4181     Domain of unknown function (DUF4181)
  ------ inclusion threshold ------
      0.026   13.9   6.4      0.057   12.8   6.4    1.5  1  Ceramidase  Ceramidase
          1    9.4   9.6       0.36   10.9   1.9    2.2  2  MARVEL      Membrane-associating domain
        1.7    8.7   6.0        4.1    7.4   6.0    1.7  1  Sars6       Open reading frame 6 from SARS coronavirus
          2    8.4   8.4       0.61   10.0   4.9    1.8  2  PIG-P       PIG-P
        3.4    7.1   8.9        6.7    6.1   2.3    2.1  2  DUF1129     Protein of unknown function (DUF1129)
        5.7    7.2  12.7       0.32   11.3   3.4    2.3  2  DUF2304     Uncharacterized conserved protein (DUF2304)


Domain annotation for each model (and alignments):
>> SecE  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.5   5.7e+03      47      54 ..      47      53 ..      42      60 .. 0.56
   2 ?    0.2   0.4      0.32   7.1e+02      31      39 ..      83      91 ..      71      96 .. 0.51
   3 !   63.5   2.5   5.6e-21   1.2e-17       2      55 .]     104     157 .]     103     157 .] 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.5
                HHHHHHHH CS
        SecE 47 fsklinll 54
                + +li ++
  EGE27680.1 47 L-WLIAII 53
                3.444333 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.32
                HHHHHHHHH CS
        SecE 31 vfvvimglf 39
                v  v++g++
  EGE27680.1 83 VSLVVFGFI 91
                223333333 PP

  == domain 3  score: 63.5 bits;  conditional E-value: 5.6e-21
                 HCHHHHHHHHHCCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SecE   2 kFfkevkaElkKVtWPtrkEllkttvvVlvfvvimglflflvDlvfsklinlll 55 
                 + +k++  El++VtWPt++E+ ++t+ V+++++i+g++++l+D++fs++++l++
  EGE27680.1 104 TLLKDAGIELRRVTWPTKDETARYTWQVILIMIIFGIIIWLLDMFFSYIVGLII 157
                 568999********************************************9985 PP

>> DUF4181  Domain of unknown function (DUF4181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   4.4e-06    0.0099      25      78 ..      34      90 ..       8     106 .. 0.84
   2 ?    2.8   1.5     0.061   1.4e+02      35      57 ..     129     150 ..     114     157 .] 0.51

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.4e-06
     DUF4181 25 khvnklhkkielilrvlfiifiilsliiilsreyvdii....ilifvflvvlelfRav 78
                ++v k+h+++++ l +l+ i+ ++s + + ++ + +++    +++ + ++v+ ++ ++
  EGE27680.1 34 VEVAKKHSAKDFLL-WLIAIIAMISATLVSQYLPRYWApannVWTQIAITVSLVVFGF 90
                589**********6.88888888999999999999999****8888888877777766 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.061
     DUF4181  35 elilrvlfiifiilsliiilsre 57 
                 + ++ +++iif i++++  + ++
  EGE27680.1 129 WQVI-LIMIIFGIIIWLLDMFFS 150
                 3332.233344444444444433 PP

>> Ceramidase  Ceramidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   6.4   2.5e-05     0.057     100     194 ..      34     149 ..      26     153 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
  Ceramidase 100 fsekksrstrvllgvlltalavvv.tllylvlk......epvlhqvafalltvlvllrsiyliekkv..............dksdeaakkevkklallg 177
                 ++  k++s + +l +l++++a++  tl++ +l       + v  q+a  +  v+  +  ++ +++                + + ++++++++ + ++ 
  EGE27680.1  34 VEVAKKHSAKDFLLWLIAIIAMISaTLVSQYLPrywapaNNVWTQIAITVSLVVFGFICLAFTNQGSafktllkdagielrRVTWPTKDETARYTWQVI 132
                 4555566666666666655555440444444444444445577777777777777777777776544777788888888875567899999999***** PP

  Ceramidase 178 liifllgfliWnlDnlf 194
                 li++++g++iW+lD++f
  EGE27680.1 133 LIMIIFGIIIWLLDMFF 149
                 **************987 PP

>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.9   0.00016      0.36      14      66 ..      48      96 ..      39     107 .. 0.60
   2 ?    3.1   1.1      0.04        90      12      28 ..     129     145 ..     124     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
      MARVEL 14 lvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfk 66
                ++ a  i+++i++++  + q+l+++++ +n + +  ++++ +++f++++ +f 
  EGE27680.1 48 WLIA--IIAMISATL--VSQYLPRYWAPANNVWTQIAITVSLVVFGFICLAFT 96
                3333..333333333..345667777777777777777777766666665554 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.04
      MARVEL  12 lqlvfaiiilgliasli 28 
                 +q+++ +ii+g+i+ l+
  EGE27680.1 129 WQVILIMIIFGIIIWLL 145
                 68899999999998887 PP

>> Sars6  Open reading frame 6 from SARS coronavirus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.0    0.0019       4.1      15      37 ..     131     153 ..     127     157 .] 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0019
       Sars6  15 liiimrtfriaiwnldviissiv 37 
                 +i+im  f i iw ld+  s iv
  EGE27680.1 131 VILIMIIFGIIIWLLDMFFSYIV 153
                 689999**************999 PP

>> PIG-P  PIG-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.9   0.00027      0.61      20      86 ..      45     110 ..      41     136 .. 0.79
   2 ?   -0.2   0.4       0.4   8.9e+02       4      25 ..     127     148 ..     121     153 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00027
       PIG-P  20 yllwallPeevlhalgityypnryWalavpayllmlvlyiyvalaslnlevltppldsletivDeaa 86 
                 +llw ++   +++a  ++ y  ryWa a  ++  +++ + +v++ ++ l + t++ + ++t++ +a 
  EGE27680.1  45 FLLWLIAIIAMISATLVSQYLPRYWAPANNVWTQIAITVSLVVFGFICL-AFTNQGSAFKTLLKDAG 110
                 6899999999999999999999***********9999999999988888.88888888888877666 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.4
       PIG-P   4 yygFvlyllstlafllyllwal 25 
                 y + v+ +++++ ++++ll ++
  EGE27680.1 127 YTWQVILIMIIFGIIIWLLDMF 148
                 5566666666666666666554 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3     0.003       6.7     142     192 ..      37      87 ..      25      94 .. 0.85
   2 ?    5.3   0.6    0.0056        12     133     166 ..     116     149 ..     110     157 .] 0.75

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.003
     DUF1129 142 krpplwkrllilllllvvwlvlftlvallpaviNpvLpplvliiigviafv 192
                  ++   k +l+ l+++++++ ++++ + lp++  p  + + +i+i v  +v
  EGE27680.1  37 AKKHSAKDFLLWLIAIIAMISATLVSQYLPRYWAPANNVWTQIAITVSLVV 87 
                 5677788999999999999999999999*****************986655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0056
     DUF1129 133 lltrekkkkkrpplwkrllilllllvvwlvlftl 166
                 ++ ++k+++ r  +  +l+++++ +++wl+ +++
  EGE27680.1 116 VTWPTKDETARYTWQVILIMIIFGIIIWLLDMFF 149
                 5556688899999988999999999999876655 PP

>> DUF2304  Uncharacterized conserved protein (DUF2304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.4   0.00014      0.32      24      82 ..      38      97 ..      34     105 .. 0.88
   2 ?    0.9   1.9      0.24   5.3e+02       3      19 ..     130     146 ..     124     154 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
     DUF2304 24 kklkleysllwlllalilivlslfpqil.tvlanllGvgrgtnllfllgivfllvilfsl 82
                kk++++++llwl+ ++++i + l+ q l  + a +  v +++ + + l+++ +++++f++
  EGE27680.1 38 KKHSAKDFLLWLIAIIAMISATLVSQYLpRYWAPANNVWTQIAITVSLVVFGFICLAFTN 97
                799**********************98878899999999999999988888888888876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.24
     DUF2304   3 qiiliivsvllllliir 19 
                 q+ili++++ ++++++ 
  EGE27680.1 130 QVILIMIIFGIIIWLLD 146
                 55555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1277  (0.0712254); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1088.60
//
Query:       EGE27681.1  [L=176]
Description: transcription antitermination protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-26   92.3   0.1    2.7e-26   91.9   0.1    1.2  1  NusG       Transcription termination factor nusG
    5.2e-08   32.6   0.1    1.4e-07   31.2   0.1    1.7  1  KOW        KOW motif
  ------ inclusion threshold ------
       0.03   13.0   0.0      0.041   12.6   0.0    1.1  1  PolyG_pol  Sigma NS protein
      0.031   15.3   0.0      0.052   14.5   0.0    1.4  1  MucBP      MucBP domain


Domain annotation for each model (and alignments):
>> NusG  Transcription termination factor nusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.1   6.1e-30   2.7e-26       1      95 []       1     106 [.       1     106 [. 0.94

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 6.1e-30
                 -EEEEEEE-TTTHHHHHHHH...HHHCT-.....EEE-SCEEEEEEETTEEE....CSSTTEEEEEE---CHHHHHHHCSTTEEEE-EETT.SSCC-EB CS
                 xxxxxxxxxxxxxxxxxxxx...xxxxxx.....xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        NusG   1 kkWYvlqvepgkekkvkenL...leeegl.....evivPaeekveirqgkkk....klfpgyifikadmndkllmairktpgVtgfvrvgg.eskpvpl 86 
                 ++WY++q  +g+e++v+++L   +++ ++     ev+vP+ee+ve+r+gkk     klfpgy++i+++mn+++++++r++p++tgf+  gg  ++p+p+
  EGE27681.1   1 MRWYIIQAFSGYENQVQRSLverIKRSEFadkfgEVLVPTEEVVEMREGKKYtmqqKLFPGYVLINMEMNEDTWHIVRSCPNITGFI--GGtPENPAPI 97 
                 58******************888888888******************999889999*******************************..77799***** PP

                 -HHHHHHHH CS
                 xxxxxxxxx RF
        NusG  87 seeevqnil 95 
                 ++ e ++il
  EGE27681.1  98 TQIEADRIL 106
                 **9999985 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   3.1e-11   1.4e-07       1      29 [.     124     156 ..     124     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 3.1e-11
                 TTSEEEESSSTTTTCEEEEEEEETTT....TEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhk....vrV 29 
                 pG++V V++Gp+ +++G V+kvd++k     +V
  EGE27681.1 124 PGEEVLVIDGPFTDFKGLVKKVDYDKsklhLTV 156
                 8*************************6666444 PP

>> PolyG_pol  Sigma NS protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.2e-06     0.041      16      75 ..      53     112 ..      44     121 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.2e-06
   PolyG_pol  16 aagqtvlrnfvlLrvvvsaksrravkavqlhfpglksvvkcLsPLaavardRllrksnve 75 
                 + +q++++++vl+ + +++++ + v+     +++++       P++ + +dR+l++ n++
  EGE27681.1  53 TMQQKLFPGYVLINMEMNEDTWHIVRSCPNITGFIGGTPENPAPITQIEADRILNRINKT 112
                 678****************************************************99875 PP

>> MucBP  MucBP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.2e-05     0.052       8      47 ..      31      71 ..      27      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
       MucBP  8 DedGkela.dsdtitgkvGttYtttaktidgYtlveadgpe 47
                D+ G++l  +++ ++ ++G++Yt ++k ++gY l++++ +e
  EGE27681.1 31 DKFGEVLVpTEEVVEMREGKKYTMQQKLFPGYVLINMEMNE 71
                67788888666777899*****************9997444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1355.60
//
Query:       EGE27682.1  [L=143]
Description: 50S ribosomal protein L11 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-31  107.0   0.5    4.9e-31  106.4   0.5    1.4  1  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
    9.8e-26   90.1   1.2    1.4e-25   89.5   1.2    1.3  1  Ribosomal_L11    Ribosomal protein L11, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.5   5.5e-35   4.9e-31       1      65 []       2      67 ..       2      67 .. 0.98

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 5.5e-35
  Ribosomal_L11_N  1 akkvvkvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkd.kkglripVkitvyqdrsf 65
                     akk+ +++kl+vpaGkA+p+Pp+GpaLG++G+ni+ fckefn+a ++ ++gl+ipV+itv++d+sf
       EGE27682.1  2 AKKIDGYIKLQVPAGKANPSPPIGPALGQKGVNIMAFCKEFNAASANiEPGLPIPVVITVFSDKSF 67
                     6999*************************************************************9 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   1.2   1.6e-29   1.4e-25       1      70 []      72     140 ..      72     140 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 1.6e-29
                    ---SHHHHHHHHHTXSSXXSSTTTSXXEEEEHHHHHHHHHHHGGGHTXS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11   1 ktPptsylLkkaagiekgsgkpgketvGtvslkqvyeIAkiKksdlnaalsleaavksilgtArsmGikV 70 
                    k+Pp+++lL kaagi+kgs++p++++vGtv  +q+ eI k+K+ dl+aa +leaa+++i+gtArsmGi+V
     EGE27682.1  72 KSPPAAVLLRKAAGISKGSSTPNTSKVGTVNRDQLEEIVKTKQADLTAA-ELEAAIRTIAGTARSMGITV 140
                    79*********************************************99.******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1080.67
//
Query:       EGE27683.1  [L=233]
Description: 50S ribosomal protein L1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-50  170.7   0.0      4e-50  170.4   0.0    1.1  1  Ribosomal_L1  Ribosomal protein L1p/L10e family
  ------ inclusion threshold ------
      0.077   13.7   0.3      0.077   13.7   0.3    2.1  3  PTS_IIB       PTS system, Lactose/Cellobiose specific IIB sub


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.4   0.0   4.4e-54     4e-50       8     204 .]      37     220 ..      27     220 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.4 bits;  conditional E-value: 4.4e-54
                   SS--EEEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH-SEEEEEGGGH CS
  Ribosomal_L1   8 kfdesveialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkefdlfladdrim 104
                   kf+es++ia+nl +++p+k+dq ++g  +Lp ++gk++++++++++  a+    akeag  a+v+g+++l + +      +++ ++fd+++a+++ m
    EGE27683.1  37 KFKESIDIAINL-GVDPRKSDQVVRGATNLPAGTGKTKRVAVFAQGAVAD---AAKEAG--ADVVGFEDLAESI------KAGNMDFDVVIASPDAM 121
                   9***********.*************************************...9*****..*************......89*************** PP

                   HHHHHHCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTT..SGSEEEEEEE CS
  Ribosomal_L1 105 pllpklLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkk..wkniksiylk 199
                   + +++ LG ++g+r++mP+p+   gtv++dv+++v++ ++++  +r+dk++++++ +G+++fta+++ +N++a+++ l++++p+   + +ik+i+l+
    EGE27683.1 122 RVVGQ-LGTILGPRGLMPNPK--VGTVTADVATAVKNTKAGQAQYRVDKAGIIHASIGQVGFTADQIEQNATALLNDLKRAKPATskGIYIKKITLS 215
                   *****.***************..99********************************************************999888********** PP

                   ETTS- CS
  Ribosomal_L1 200 ttmsp 204
                   +tm+p
    EGE27683.1 216 STMGP 220
                   ****8 PP

>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.1     1e+04      71      89 ..      13      31 ..       3      32 .. 0.70
   2 ?   13.7   0.3   8.6e-06     0.077      15      56 ..      78     119 ..      75     155 .. 0.88
   3 ?   -2.1   0.0      0.75   6.7e+03      39      48 ..     180     189 ..     149     214 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.1
                EEECTTHHHCCHCHHHHHH CS
     PTS_IIB 71 avinikdalgimdgekvlk 89
                ++++ +++++i+++ ++l+
  EGE27683.1 13 DRVDSNKLYTIEEAVAILN 31
                6788888888888887775 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.6e-06
                 HHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEES CS
     PTS_IIB  15 maaeklekaakelgieaegeagveleaeeiaddaDlvllapq 56 
                  a+ ++ +aake+g +++g +  + + ++ + d+D+v+ +p+
  EGE27683.1  78 FAQGAVADAAKEAGADVVGFEDLAESIKAGNMDFDVVIASPD 119
                 68899******************6666666677*******97 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.75
                 GGHHHHHHT- CS
     PTS_IIB  39 leaeeiadda 48 
                  +a++i+++a
  EGE27683.1 180 FTADQIEQNA 189
                 2444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1804.94
//
Query:       EGE27684.1  [L=167]
Description: 50S ribosomal protein L10 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-28   96.6   0.1    1.1e-27   96.1   0.1    1.3  1  Ribosomal_L10  Ribosomal protein L10
  ------ inclusion threshold ------
       0.65   10.9   3.9        1.4    9.7   0.1    2.3  2  Rotamase_2     PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.1   1.2e-31   1.1e-27       3     100 .]       5     101 ..       3     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 1.2e-31
                    CCCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS.SSCGCCSSSEEEEEESS-TCHHHHCCCCC CS
  Ribosomal_L10   3 kekKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgeeeklkellkgpvalvftnedpvalakvleef 98 
                     ++K+++v+e++e +k + s+vv+d +g+tva+++elRk+ re+g+ +++v+ntl+rrAl++t++e ++++ ++gp++++f+ne+p a+a++++ef
     EGE27684.1   5 LQDKQAIVAEVNETAKGALSAVVADSRGVTVAKMTELRKAAREAGVDMRIVRNTLLRRALADTSFE-CMNDVFVGPTLIAFSNEHPGAAARLFKEF 99 
                    589**************************************************************7.***************************** PP

                    HH CS
  Ribosomal_L10  99 ak 100
                    ak
     EGE27684.1 100 AK 101
                    87 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00016       1.4      77     113 ..      10      46 ..       3      51 .. 0.89
   2 ?    1.6   1.1     0.054   4.9e+02      34      82 ..      91     140 ..      76     161 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
  Rotamase_2  77 elakaafalkpgevsgpvetdngyyivkvtevkpakv 113
                 ++ ++++++ +g++s +v  + g  + k te+++a++
  EGE27684.1  10 AIVAEVNETAKGALSAVVADSRGVTVAKMTELRKAAR 46 
                 7788999*************************99865 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.054
  Rotamase_2  34 vaaeaalalakagaekdfaalakgnskkaadlgifesa..........snlpe...elakaa 82 
                 +aa + ++ aka+            +k++ +  +fe +          ++lp    ++a  +
  EGE27684.1  91 AAARLFKEFAKAN------------DKFEIKGAAFEGEfidaksidrlATLPTydeAIARLM 140
                 4444444444444............4444444444433333333333322333333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1424.22
//
Query:       EGE27685.1  [L=124]
Description: 50S ribosomal protein L7/L12 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-32  112.2   9.9    1.9e-32  111.4   9.9    1.4  1  Ribosomal_L12    Ribosomal protein L7/L12 C-terminal domain
    2.9e-16   58.9  21.1    4.7e-16   58.2   9.0    3.4  3  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
  ------ inclusion threshold ------
       0.22   10.3   0.1       0.28   10.0   0.1    1.0  1  Amnionless       Amnionless
          4    8.1  23.0        0.2   12.2   7.4    2.2  2  Ribosomal_60s    60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   9.9   4.3e-36   1.9e-32       1      67 []      58     124 .]      58     124 .] 1.00

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 4.3e-36
                    EEEEEEE-TT-HHHHHHHHHHHH---HHHHHHHHTTTTSTEEEEE-HHHHHHHHHHHHCTT-EEEEE CS
  Ribosomal_L12   1 fdViLksagakKiaVIKaVreitglgLkeaKdlVeaapkvvkegvskeeAeeikkkLeeaGAevelk 67 
                    fdV+L+sag+kK+aVIK+Vre+tglgLkeaKdlVe+ap++vke++sk+eAee+kkkLeeaGA+velk
     EGE27685.1  58 FDVVLTSAGDKKVAVIKVVREVTGLGLKEAKDLVEGAPQTVKEAASKAEAEELKKKLEEAGASVELK 124
                    9*****************************************************************9 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   9.0   1.1e-19   4.7e-16       1      48 []       4      52 ..       4      54 .. 0.82
   2 ?    3.8   0.0     0.011        48       4      22 ..      74      92 ..      72      93 .. 0.89
   3 ?    3.4   1.8     0.014        63      16      26 ..     106     116 ..      97     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.1e-19
                     HHHHHHHHHHTSBHHHHHHHHHHHHHHTTHHHHH.HHHHH.HHHHHHHH CS
  Ribosomal_L12_N  1 kieeiieaikeltvLElseLvkalEekFGVsAAA.Pvavaaaaaaaaaa 48
                     ++e+i++ai+e +v+E++eL++a+EekFGVsAAA ++a+aa++ a++aa
       EGE27685.1  4 TNEQILDAIAEKSVMEIVELISAMEEKFGVSAAAlAAAPAAGGDAGGAA 52
                     689****************************886356666555555554 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.011
                     HHHHHHHTSBHHHHHHHHH CS
  Ribosomal_L12_N  4 eiieaikeltvLElseLvk 22
                     +++ ++ +l + E+++Lv+
       EGE27685.1 74 KVVREVTGLGLKEAKDLVE 92
                     57889999*********97 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.014
                      HHHHHHHHHHH CS
  Ribosomal_L12_N  16 ElseLvkalEe 26 
                      E+ eL+k+lEe
       EGE27685.1 106 EAEELKKKLEE 116
                      99********9 PP

>> Amnionless  Amnionless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   6.2e-05      0.28     300     400 ..      11     114 ..       6     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.2e-05
  Amnionless 300 syaerlaqelladiaehgealgilsaeletsgasssdssaagapgesaglvlgivfgl...vlllllllillllllrrkgvl.rlpqllkspsrreeve 394
                   ae+++ e+++ i ++ e++g+ +a l ++ a+++d   a +++ ++ +vl   +g    +++ ++  +  l+l + k ++   pq +k  + + e+e
  EGE27685.1  11 AIAEKSVMEIVELISAMEEKFGVSAAALAAAPAAGGDAGGAAEEKDEFDVVLT-SAGDkkvAVIKVVREVTGLGLKEAKDLVeGAPQTVKEAASKAEAE 108
                 6799*******************************999967677777777776.666567788999999999999999999888888888887777777 PP

  Amnionless 395 elkakl 400
                 elk+kl
  EGE27685.1 109 ELKKKL 114
                 777665 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   7.4   4.5e-05       0.2      34      72 ..      19      57 ..       4      61 .. 0.55
   2 ?    2.5   7.3     0.049   2.2e+02      47      74 ..      88     116 ..      58     122 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s 34 dieellangaaklaaaaaaaaaaaaaaaaaaaaeekkke 72
                   +i el+++ ++k+  +aaa aaa aa++ a  a+e+k e
     EGE27685.1 19 EIVELISAMEEKFGVSAAALAAAPAAGGDAGGAAEEKDE 57
                   456777777777764444444444444444444444433 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.049
                    X.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  47 a.aaaaaaaaaaaaaaaaaaaeekkkeee 74 
                       + +a++   +aa++a+a+e kkk ee
     EGE27685.1  88 KdLVEGAPQTVKEAASKAEAEELKKKLEE 116
                    24455677777777777766666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1294  (0.0721736); expected 358.6 (0.02)
Passed bias filter:                      684  (0.0381505); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1048.80
//
Query:       EGE27686.1  [L=1363]
Description: DNA-directed RNA polymerase subunit beta [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-162  541.0   0.2   1.9e-161  537.5   0.4    2.1  2  RNA_pol_Rpb2_6   RNA polymerase Rpb2, domain 6
    1.9e-39  135.3   0.0    4.2e-39  134.2   0.0    1.6  1  RNA_pol_Rpb2_1   RNA polymerase beta subunit
    1.3e-30  105.3   0.0    2.6e-30  104.4   0.0    1.6  1  RNA_pol_Rpb2_3   RNA polymerase Rpb2, domain 3
    1.1e-27   96.9   1.3    1.1e-19   70.8   1.3    2.6  2  RNA_pol_Rpb2_2   RNA polymerase Rpb2, domain 2
    2.3e-26   92.0   0.1    7.2e-26   90.4   0.0    2.0  2  RNA_pol_Rpb2_7   RNA polymerase Rpb2, domain 7
      4e-22   78.3   1.7    8.5e-21   74.0   2.5    2.8  2  RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domai
  ------ inclusion threshold ------
      0.077   11.8   0.3       0.12   11.1   0.3    1.2  1  AAA_32           AAA domain


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.076   1.9e+02       2      30 ..     675     703 ..     674     710 .. 0.87
   2 !  537.5   0.4  7.3e-165  1.9e-161       1     390 []     727    1284 ..     727    1284 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.076
                     HHT-SS-TTB-HHHHHHHHHHGGGB-S-- CS
  RNA_pol_Rpb2_6   2 aklapvvehvqspriiiqaamekqalgiy 30 
                     a l+p+ eh +++r ++ ++m++qa+ + 
      EGE27686.1 675 AGLIPFLEHDDANRALMGSNMQRQAVPTL 703
                     7899********************97665 PP

  == domain 2  score: 537.5 bits;  conditional E-value: 7.3e-165
                      HHHT-SS-TTB-HHHHHHHHHHGGGB-S.....---TTTTT---SSEEEESS----SSB-S.TTTTTS.........GGGS-SEEEEEBBBS- CS
  RNA_pol_Rpb2_6    1 vaklapvvehvqspriiiqaamekqalg.....iyslnkfkrsnqktyllcinqkPlvktgdkveagqvl.dgpatekgelalGqnavVAvms 87  
                      vak+ +v+e+v+++rii+++++++ + g     iy+l k++rsnq+t   cinq+ +v++gd++e g++l dgp+t+ gelalGqn+ VA+m+
      EGE27686.1  727 VAKRGGVIEEVDASRIIVRVNEDEMTAGeagidIYNLIKYTRSNQNT---CINQRVIVNEGDEIERGDILaDGPSTDLGELALGQNMRVAFMP 816 
                      699*****************88888777999****************...******************************************* PP

                      -TTTTTTT-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS---.-S--..--SS-GGGS-TTSB--SS-EEETT-EEE---...B-----... CS
  RNA_pol_Rpb2_6   88 yeGYniEDaiilnerlvdrdvftsihikeyeveardtklgeeeitrdipnvseealkkLdedGivrvgaevkegdilvgkvt.kgeteltpee 179 
                      ++GYn+ED+i+l+er+v++d ft+ihi+e ++ ardtklg+eeit dipnv+e+al++Lde Giv++gaev +gdilvgkvt kge++ltpee
      EGE27686.1  817 WNGYNFEDSILLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITGDIPNVGEAALANLDEAGIVYIGAEVDAGDILVGKVTpKGESQLTPEE 909 
                      ********************************************************************************************* PP

                      -----------..-B---EE--TT-EEEEEEEEE........................................................... CS
  RNA_pol_Rpb2_6  180 kllraifgekarevkdtslrvksgeegvVdkvkvfsr........................................................ 216 
                      kllraifgeka +vkdtslrv+s+++g+V++v+vf+r                                                        
      EGE27686.1  910 KLLRAIFGEKAADVKDTSLRVPSSTKGTVIDVQVFTRdglekdsraksiekamlddyrkdlkeelvifeaaakgrilslldgkkvsggagfka 1002
                      ********************************************************************************************* PP

                      ............................................................EE-TT--EEEEEEEEEEE---TT-BEEETTS-- CS
  RNA_pol_Rpb2_6  217 ........................................................ekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqK 253 
                                                                              ++gd+l++gv+k+vkvy+a kR++q GDK+a+rhG+K
      EGE27686.1 1003 gtilstkdienlpleslldiqpaeeevserlgqiaeflsdkqkdidnkftekkrklTQGDDLAHGVQKIVKVYLAVKRRIQPGDKMAGRHGNK 1095
                      ********************************************************************************************* PP

                      -BBEEEB-TTTSEEETTS---SEEE-GGGCHHH-BTTHHHHHHHHHCCCS........................................... CS
  RNA_pol_Rpb2_6  254 GvvslilpqeDmPfledGivvDivlNPlgvPSRmtigqllEtllgkaaal........................................... 303 
                      Gvvs+i+p+eDmP+ e+G +vDivlNPlgvPSRm+igq+lEt+lg+aa+                                            
      EGE27686.1 1096 GVVSRIMPVEDMPYDENGNPVDIVLNPLGVPSRMNIGQVLETHLGMAAKGlgdkinamlrsqvavselrefldkiynqvggeqvdldslsded 1188
                      ********************************************************************************************* PP

                      .........SSS--B--TT-...-HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB-EEEEEEBS--CCCS----SS--B-TTT--B-SC CS
  RNA_pol_Rpb2_6  304 .........egkkvdatvFdgakeeeikelLeeagleasGkevlydGrtGekleaeifvGviYylkLkhlvedKihaRstGpyslltqQPlgG 387 
                               +g+ + + vFdgake++ikelL+ a l+++G+++lydGrtG+k++++++vG++Y+lkL+hlv+dK+haRstG ysl+tqQPlgG
      EGE27686.1 1189 llalcqnlkDGVPMGTAVFDGAKETQIKELLSLADLSTTGQQTLYDGRTGKKFDRPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1281
                      ********************************************************************************************* PP

                      GGG CS
  RNA_pol_Rpb2_6  388 kaq 390 
                      kaq
      EGE27686.1 1282 KAQ 1284
                      *97 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   1.7e-42   4.2e-39       1     202 [.      26     509 ..      26     510 .. 0.97

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 1.7e-42
                     CTTHHHHHHHHHHHHTHHHH....HCTTSSECCHCSSSHCSSSCEEEEEEEEEEESCSSECTTSCEEES.HHHHHHCTSBXEEEEEEEEEEEECC CS
                     xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1   1 gLvsqqldSFnkfveqdlek....iikeeaaieseeeiqssgeelelkfvsirlgkPvvdesdasereiyPkearlrnltYsaplyvklklvvye 91 
                     +L+ +q+dS+++f++++ +      i+ +aa+ s ++i+s +++ +l+fv+++lg+P +de          +e+ +r+ t+ apl+vk++l++++
      EGE27686.1  26 YLLAIQVDSYEQFLQEHKKPkaraNIGLQAAFSSIFPIESHSGNAQLQFVEYYLGEPEFDE----------RECIMRGSTFAAPLRVKIRLIIKD 110
                     6999**********987665111167788999999999999999*****************..........**********************99 PP

                     CC...TCCEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SSEEETTCEEEEXEEEE............................ CS
                     xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................ RF
  RNA_pol_Rpb2_1  92 kd...nkeeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGyFiinGtekvivaqek............................ 155
                     k+     ++ +e+ vy+Ge+PlM+++                        G+FiinGte+viv+q++                            
      EGE27686.1 111 KEnktAIKDVREQSVYMGEIPLMTDN------------------------GTFIINGTERVIVSQLHrspgvffdhdkgkshssgkvlynariip 181
                     996666678899**************........................********************************************* PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      EGE27686.1 182 yrgswldfefdakdlvyaridrrrkllatiilraigmdtaqildqffekvevfkgdesfeielvadrlkgemaqfdiigpdgnviveqgqrinal 276
                     *********************************************************************************************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      EGE27686.1 277 rvkrilnsgmtklavpdeylyeriigedivvgdevlvrantlidheilvklaeknvqsfkilftndidhgayiadtlradtivtreealieiykv 371
                     *********************************************************************************************** PP

                     .............................................................................................XH CS
                     .............................................................................................xx RF
  RNA_pol_Rpb2_1 156 .............................................................................................la 157
                                                                                                                  ++
      EGE27686.1 372 mrpgepptldtaeklfesmffsqerydlsnvgrmkfnrrlgrefidtddmdvqreqgvlsnqdivdvlkelieirngrgevddidhlgnrrirSV 466
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSSSHHHHSCSHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 158 GeLlaslfrvllkklerdvkerlqksleklddlmlqllvnakpit 202
                     Ge+ +++fr +l+++er+vkerl  +  + d+l++q+l+n+kp+ 
      EGE27686.1 467 GEMTENQFRIGLARVERAVKERL--TTADSDNLSPQDLINSKPVA 509
                     ***********************..99***************986 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0     1e-33   2.6e-30       1      67 [.     523     590 ..     523     591 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 1e-33
  RNA_pol_Rpb2_3   1 qvldrlnplselshlrrvssl.rgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallar 67 
                     q++d+ nplse++h+rrvs+l +ggl++er+++evRd+h +h+Gr+Cp+eTPEG+n+Gl++sLa++a+
      EGE27686.1 523 QFMDQNNPLSEITHKRRVSALgPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLATFAK 590
                     89***************************************************************996 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.6e-08     4e-05       1      72 [.     154     226 ..     154     252 .. 0.83
   2 !   70.8   1.3   4.3e-23   1.1e-19      59     190 .]     314     464 ..     310     464 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.6e-08
                     -TSCEEEEE-SSSSSE..SSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHHH CS
  RNA_pol_Rpb2_2   1 rsngiyvekekdknki..satvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIler 72 
                     rs+g+ +  +k k+    +  + + +i +rgs+l +e d k+l+++ri+++rk  + i+l+A+g+     Il++
      EGE27686.1 154 RSPGVFFDHDKGKSHSsgKVLYNARIIPYRGSWLDFEFDAKDLVYARIDRRRKLLATIILRAIGM-DTAQILDQ 226
                     56777776666555554466899999**************************************8.55788875 PP

  == domain 2  score: 70.8 bits;  conditional E-value: 4.3e-23
                     HHTT--STTHHHHHHTS........SSTTHHHHHHHHHHHHHHCTSSSCHHHHHHHHHCSSTTSSSCCCCCHHHHHHH......CHHHHHHHTTT CS
  RNA_pol_Rpb2_2  59 kAlglvsdreIlericy........dsedsqlleelleeleekeeiqtqeealdyigkvvalrrgeearlqsareilq......krydlgeigre 139
                     +A  l  d+eIl ++           ++++ ++ ++   + ++  i+t+eeal +i+k   +r+ge+++l +a+++++      +rydl  +gr 
      EGE27686.1 314 RANTL-IDHEILVKLAEknvqsfkiLFTNDIDHGAYIADTLRADTIVTREEALIEIYK--VMRPGEPPTLDTAEKLFEsmffsqERYDLSNVGRM 405
                     55554.78999999998889999999999999999**********************9..*********************************** PP

                     TSSTTTTTS......SSTCHH....HHHHHHHHHHHHHHHHTTSSSS--TTSGGGEEEE CS
  RNA_pol_Rpb2_2 140 klnkhlgls......eslenkr..lkaqdilymidrLlslklgrrevDDiDhlgnkRvr 190
                     k+n++lg +       ++++++  l  qdi+   + L++++ gr+evDDiDhlgn+R+r
      EGE27686.1 406 KFNRRLGREfidtddMDVQREQgvLSNQDIVDVLKELIEIRNGRGEVDDIDHLGNRRIR 464
                     ******97532222234555555899*******************************97 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         7   1.8e+04      30      53 ..     418     439 ..     414     447 .. 0.71
   2 !   90.4   0.0   2.8e-29   7.2e-26       1      85 [.    1286    1360 ..    1286    1362 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7
                     TTEEEEEEESSSSSCCCEEEBTTT CS
  RNA_pol_Rpb2_7  30 SDavevdvcgrckllaaaneCkiv 53 
                      D  ++dv++++++l++++   ++
      EGE27686.1 418 TD--DMDVQREQGVLSNQDIVDVL 439
                     34..79999999999887655554 PP

  == domain 2  score: 90.4 bits;  conditional E-value: 2.8e-29
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEEEBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEEEE CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaaneCkivkseekiekveipeafklLlqeLqslgialkll 85  
                      GG+rfGEME++al+ayGa ++L+e+lt+kSD    dv+gr++++++     iv++e+ ++++ +pe+f++L++e++slgi++ l+
      EGE27686.1 1286 GGQRFGEMEVWALEAYGATYTLQEMLTVKSD----DVEGRTRMYKN-----IVDGEQYMNPG-MPESFNVLTKEIRSLGINIDLK 1360
                      9******************************....***********.....***********.******************9986 PP

>> RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   2.5   3.3e-24   8.5e-21       1      65 []     601     666 ..     601     666 .. 0.99
   2 ?   -1.1   0.0      0.93   2.4e+03      36      56 ..    1256    1276 ..    1252    1278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 3.3e-24
                      EEEEE.TEEEEEEEEEEHHHHTTSEEE-SSS-BETTSCBSSSEEEEECSSCEEEEEGGG-SEEESS CS
  RNA_pol_Rpb2_45   1 YrkVe.gkvtdevvYLtAdeEekyviAqAnapldeegrfveerVlaRrkgevelvepeeVdymDVS 65 
                      Yr+V+ g+vtde++Y +A eE ++viAqA++p++++g+++ee+V++R++ge++ +++++V+ mDVS
       EGE27686.1 601 YRRVVdGRVTDEIEYVSAIEEVGMVIAQADSPMNDKGELTEEMVSVRHDGEFVRMSADKVTHMDVS 666
                      9***99***********************************************************9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.93
                       SCBSSSEEEEECSSCEEEEEG CS
  RNA_pol_Rpb2_45   36 grfveerVlaRrkgevelvep 56  
                       +++v+++ +aR  g + lv++
       EGE27686.1 1256 NHLVDDKMHARSTGSYSLVTQ 1276
                       6899********9*9999986 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   4.6e-05      0.12     118     218 ..     960    1060 ..     945    1080 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.6e-05
      AAA_32  118 eeieeefeekeeelleelekeaeekgfalkrtpegivlvPlkdgkplseeefealpeeerkeleekseeleeeleeilrelrelekeakeklkeler 214 
                  +++ ++++++ +e l  +e+ a+ + ++l++ ++    +  k g  ls +++e+lp e   +++ ++ee++e+l +i + l + +k++++k++e +r
  EGE27686.1  960 KAMLDDYRKDLKEELVIFEAAAKGRILSLLDGKKVSGGAGFKAGTILSTKDIENLPLESLLDIQPAEEEVSERLGQIAEFLSDKQKDIDNKFTEKKR 1056
                  56667777888888888999999999999999999999999*****************************************************999 PP

      AAA_32  215 evak 218 
                  ++++
  EGE27686.1 1057 KLTQ 1060
                  9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.43
# Mc/sec: 9537.00
//
Query:       EGE27687.1  [L=1412]
Description: DNA-directed RNA polymerase subunit beta' [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-89  298.9   0.0    7.2e-89  298.2   0.0    1.4  1  RNA_pol_Rpb1_1   RNA polymerase Rpb1, domain 1
    1.1e-77  261.0   0.4    1.9e-77  260.3   0.4    1.3  1  RNA_pol_Rpb1_5   RNA polymerase Rpb1, domain 5
    1.1e-35  123.3   0.0    1.2e-32  113.4   0.0    2.6  1  RNA_pol_Rpb1_2   RNA polymerase Rpb1, domain 2
    2.8e-25   89.1   0.0    1.8e-24   86.5   0.0    2.3  2  RNA_pol_Rpb1_3   RNA polymerase Rpb1, domain 3
    3.7e-20   71.9   0.2      9e-20   70.6   0.2    1.7  1  RNA_pol_Rpb1_4   RNA polymerase Rpb1, domain 4
      2e-07   31.1   0.4       0.21   11.8   0.0    4.9  4  Peptidase_M23    Peptidase family M23
    3.7e-07   30.2   0.5      0.048   13.7   0.0    3.6  3  Apocytochr_F_C   Apocytochrome F, C-terminal
  ------ inclusion threshold ------
      0.011   15.5   0.2       0.93    9.4   0.0    3.5  4  Biotin_lipoyl_2  Biotin-lipoyl like
       0.13   12.5   0.3        3.3    7.9   0.0    3.1  3  ApbA_C           Ketopantoate reductase PanE/ApbA C terminal


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.2   0.0   3.6e-92   7.2e-89       2     312 .]      17     344 ..      16     344 .. 0.96

  Alignments for each domain:
  == domain 1  score: 298.2 bits;  conditional E-value: 3.6e-92
                     E---EEEEEE--HHHHHHH-SBB--STTSTCSTSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTT.........T---..........--EEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxx..........xxxxxxxx RF
  RNA_pol_Rpb1_1   2 kkikeiqfgiaspeeirkwSvvevtkaetieekslkPeegGllDerlgtidkdleCetCgkkkk.........eCeg..........hfGhieLa 77 
                     k++++iq+++aspe i++wS++ev+k+eti++++ kPe+ Gl++ +++++ kd+eC +Cgk+k          +C +          ++GhieLa
      EGE27687.1  17 KEFDSIQISLASPEAIKSWSHGEVKKPETINYRTFKPERDGLFCAKIFGPVKDFEC-LCGKYKRrkfqgiiceRCGVevtaakvrreRMGHIELA 110
                     7899****************************************************.******99999999998988****************** PP

                     CEEE-HHHHHH...........HHHHCTTCETTTTEBSS-TT.....SH....HHHHHHCSSSCC......CCHHHHHHHHCCS-BE-SSSSB-E CS
                     xxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1  78 kPvfhigffkl...........ilkilecvckecskllldee.....kkkllsklkkrekleelk......krlkaieelckkinlcekCgavqp 150
                     +Pv+hi+f+k+           +l+++e+v++++s+++ d++     k +ll ++++ ++le++       ++++a+++l+++i++         
      EGE27687.1 111 SPVAHIWFLKSlpsrigllldiTLRDIERVLYFESYIVTDPGmtsleKYQLLDDEEYFNALEQYGdefiakMGAEAVQDLLRDIDV--------- 196
                     ******************************************88887667777777888888887999999***************......... PP

                     EEEEETTEEEEEESSSSTSCEEEE-HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGCCECCEEE--GGGS-BEESSSSSEEBECCCCHHHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 151 kleeegeklkaalkkskeeekeklsaekvkkllkriededvevlgfkssgsrPewliltvlPVpPpeiRPsvqldggrrsedDlteklrdiikrN 245
                       + e  +l++a+ ++ +       ++k+kk+ kr++     +++f++s+++Pew+++tvlPV+Pp++RP+v l+ggr++++Dl++++r++i+rN
      EGE27687.1 197 --DGEIDELRTAIPQTGS-------ETKLKKMSKRLQ----LLESFRDSNNKPEWMVMTVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRN 278
                     ..889999*****99999.......899*********....****************************************************** PP

                     HHHHHHHHSSSSSTCHHHHHHHHHHHHHHCC-TTSSSSSEEBSTTSSS--THHHHHTSSSSCCCCCT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 246 nrLkkaeeegapeliieeekelLQehvatlfdneisglkpatqkskrplkslsqrLkGKeGrfRgnL 312
                     nrLk+ +e +ap++i+++ek++LQe+v++l+dn  +g + +t ++krplksl +++kGK+GrfR+nL
      EGE27687.1 279 NRLKRLLELNAPDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNL 344
                     *************************************.999*************************9 PP

>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.3   0.4   9.3e-81   1.9e-77       1     265 [.     769    1307 ..     769    1309 .. 0.95

  Alignments for each domain:
  == domain 1  score: 260.3 bits;  conditional E-value: 9.3e-81
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEETTS-EEESSGGGTS........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrnsggeivqflygedg........................... 66  
                      GL+v ++f++t+g+R+GL+DtA+kTa+sGYl+Rrlv++++d+v+++dd+++++g+++++++ g+++                           
      EGE27687.1  769 GLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITQDDCGTDAGQRMTPVIVGGEIverlgdrvlgrvaakdvvnadgdvvvp 861 
                      9******************************************************************************************** PP

                      ................................................B--TT-BHHHHHHHHHHHHHHCCCSSTTSSTCSSTSSSSS..... CS
                      ................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
  RNA_pol_Rpb1_5   67 ................................................lvepGeavGiiaaQSiGePgTQltlnTFHfaGvasknvtl..... 106 
                                                                      lv++Ge+vG++aaQSiGePgTQlt++TFH++G+as+++ +     
      EGE27687.1  862 sgaliderlvekldanaidevyvrsvitceatqgvcakcygrdlarghLVNIGESVGVMAAQSIGEPGTQLTMRTFHVGGAASAASVDnsvsv 954 
                      ***********************************************************************************9998899*** PP

                      ...SHHHHHHH.....HTT-SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSE......................................... CS
                      ...xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................... RF
  RNA_pol_Rpb1_5  107 ...Gvprlkei.....lnvskniksksltvllvdeeakelekakkvkkaiek......................................... 150 
                         G +r++++      +++ ++ s+s+++ + d++ +e+e++k ++++                                            
      EGE27687.1  955 gnaGSVRFHNMktvqhADGHLVVVSRSAEIGVADDQGRERERYKVPYGSSVLvrdadaveagqviakwdphthpiitefsgtarfsditdgmt 1047
                      ***********88877778899*************************9999899*************************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5  151 ............................................................................................. 150 
                                                                                                                   
      EGE27687.1 1048 atvkvdemtgvrsfeiltskdrpsiakdlrpaiildtdegkevvyflpnetiirvsegehvtagsvlgrvpqatsgtkditgglprvadlfea 1140
                      ********************************************************************************************* PP

                      ....................CBTTEEEEEEEEEEEEEEETEEEEEEECS--HHHHTTSTT..TBETTTEEES...SHHHHHHHHCHHHHHHHH CS
                      ....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  151 ....................gikkikrilvkeaekgkeeekelvletegvnlsevlkvee..vvdageilsn...diaeileilgieaarkal 218 
                                          ++k+++r+++++++   ++ +el      ++++++++v e  +v+ ge++s+   ++++il++ g  a+++++
      EGE27687.1 1141 rrpkdhaimaemsgvvsfgkETKGKNRFIITNEDGD-VH-EEL------IPKWRQINVFEgeTVERGEVVSDgpqNPHDILRLKGETALANYI 1225
                      *****************9998899999888866644.34.367......89999999988889****************************** PP

                      HHHHHHHHHHTTS---HHHHHHHHHHHTTTSS---SSTT...................................CHCCSSSH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................xxxxxxxx RF
  RNA_pol_Rpb1_5  219 lkeiqevykvqgvsvndrHlelivdqmtkkgeivavnrs...................................Ginkaels 265 
                      ++e+qevy+ qgv++nd+H+e+iv+qm++k+e+v+ ++s                                   Gi+ka+l+
      EGE27687.1 1226 VNEVQEVYRLQGVKINDKHIEVIVRQMLRKVEVVDGGDSsyfkgdqaeyskirtlnaeliannkfpvqyerqllGITKASLA 1307
                      *************************************998888888888888888888888888888888888888887765 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   6.1e-36   1.2e-32       1     165 [.     346     487 ..     346     488 .. 0.84

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 6.1e-36
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTHHHHHHHHHHTTTSSSSEEEEESTTSSEEETTTT-SCHHCCTTTTSEEEEE- CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelnikklrklvengpevyPgasyvkredgsekklkakkrklakelekgdiverhv 95 
                     Gkrvdys+Rsvi+++p+l+l++ g+P+++a  l+ p +  +l  + + +++                + ++k++++++     +++    +   v
      EGE27687.1 346 GKRVDYSGRSVIVVGPTLRLHQCGLPKKMALELFKPFTYAKLLQNGIASTI----------------KAAKKMVEREE----PAVW---DMLAMV 417
                     9**********************************9987665444444333................33344444442....2333...233357 PP

                     -TTSEEEEE-SSTTSGGGEEEEEEEEESSSSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCSB CS
  RNA_pol_Rpb1_2  96 kdgdvvllNRqPsLhklsimahrvkvlekktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeelll 165
                     + +  vllNR+P+Lh+l+++a++  ++e+k+++l+ +v++a+NaDFDGD+m++h+p + ea+ Ea++l++
      EGE27687.1 418 IREHPVLLNRAPTLHRLGLQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMM 487
                     7889****************************************************************97 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   8.9e-28   1.8e-24       1     157 []     491     647 ..     491     647 .. 0.93
   2 ?   -1.0   0.0      0.75   1.5e+03      70     122 ..     842     883 ..     793     892 .. 0.72

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 8.9e-28
                     CSEETTTTEESSS--THHHHHHHHHSSTT........EEEEHHHHHHHHHHSSSCCSSSSSSSSSBESS.SE.............BEEHHHHHHC CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTked........vfidreeaqqllykgvgsdsktvtlrpailkp.ke.............lwtgkqtfsr 73 
                     nilsp++g+P+i+++QD++lG+y++++ +        vf++ +ea++++ +        ++++++i+++  e               + +++++r
      EGE27687.1 491 NILSPANGEPIIVPSQDVVLGLYYISRGGvnakgegmVFSTVNEALRAIGSD------DLSVNAKIKVRvAEtildektgekishTSIQDTVAGR 579
                     9***************************************************......899999999995559999999***999999999**** PP

                     CCHCCCCEEEESSSSSTSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  74 ilpneinyerkneekdgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                     +l ++i++e+       +   + +++           kk++++l++ +++++g+ke v f d+l++lgf+ ++ sg++ig++D+
      EGE27687.1 580 LLIWNIMPEGM-----AFSECNTEMT-----------KKNISKLLNSCYRKLGVKESVMFADHLMYLGFAQATLSGISIGMEDM 647
                     **********4.....3444666666...........8*********************************************8 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.75
                     HHHCCCHCCCCEEEESSSSSTSEEECSSEEEES--SHHHHSSSSTTSHHHHHH CS
  RNA_pol_Rpb1_3  70 tfsrilpneinyerkneekdgkvlikngelikGvidkkvvgkksqgslihvla 122
                     +++r+  ++++        dg+v++  g l    id+++v+ k   + i++++
      EGE27687.1 842 VLGRVAAKDVVNA------DGDVVVPSGAL----IDERLVE-KLDANAIDEVY 883
                     4444444333333......699********....7888888.55566666655 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.2   4.5e-23     9e-20       2     107 ..     677     766 ..     676     767 .. 0.82

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 4.5e-23
                     HHHCTHTCCHHHTTHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTSS CS
  RNA_pol_Rpb1_4   2 eeaerygkledlpgksleelfeakinkilnkardkagkiaskslaasNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfk 96 
                     ++ ery+k+ d++ ++++++++a++++++++   +a +   +++++ Nsi++M++sGa+Gs+++i+q+ag++G+++++              +++
      EGE27687.1 677 TAGERYNKVVDIWARTSDKIANAMMDNLSKDDVINA-DGETETQKSFNSIYMMADSGARGSATQIRQLAGMRGLMAKP--------------DGS 756
                     7889************************99444443.3333333335*******************************..............555 PP

                     SSESSTTTSSE CS
  RNA_pol_Rpb1_4  97 kidespesrGF 107
                      i+e+p++ +F
      EGE27687.1 757 -IIETPIKANF 766
                     .7777777777 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   3.3e+03      11      76 ..     651     717 ..     645     726 .. 0.78
   2 ?    3.0   0.2     0.058   1.2e+02      53      72 ..    1003    1022 ..     939    1032 .. 0.86
   3 !    9.5   0.0   0.00055       1.1      36      75 ..    1079    1120 ..    1069    1129 .. 0.80
   4 !   11.8   0.0   0.00011      0.21      11      69 ..    1143    1202 ..    1137    1208 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.6
                    TTT-EEEESSSEEEEEEEEETTTEEEEEEEECTCEEEEEEEESE.ESS-TTEEE-TTCEEEEEBSTS CS
  Peptidase_M23  11 pkgtpVlAaadGtVvfagkkegyGnvviidhgdgystlyahlsk.isvkegqkVkaGqvIGtvgstg 76 
                    p++++++ +ad +V  ++++ + G v+  +  ++++ ++a  s+ i+    ++ ++ +vI   g+t+
     EGE27687.1 651 PTKKQIVDTADAEVRDIEQQFEQGFVTAGERYNKVVDIWARTSDkIANAMMDNLSKDDVINADGETE 717
                    5677899999999999999877799999999999999999877635566888888888887777665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.058
                     SEESS-TTEEE-TTCEEEEE CS
  Peptidase_M23   53 skisvkegqkVkaGqvIGtv 72  
                     s++ v+  + V+aGqvI++ 
     EGE27687.1 1003 SSVLVRDADAVEAGQVIAKW 1022
                     67889999*********986 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00055
                     EEEEEECTCEEEEEEEESE..ESS-TTEEE-TTCEEEEEBST CS
  Peptidase_M23   36 vviidhgdgystlyahlsk..isvkegqkVkaGqvIGtvgst 75  
                      +i+d ++g + +y   ++  i+v+eg++V aG v+G+v + 
     EGE27687.1 1079 AIILDTDEGKEVVYFLPNEtiIRVSEGEHVTAGSVLGRVPQA 1120
                     58889988888888776664567***************9844 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00011
                     TTT-EEEESSSEEEEEEEEETTTEEEEEEEECTC.EEEEEEEESEESS-TTEEE-TTCEE CS
  Peptidase_M23   11 pkgtpVlAaadGtVvfagkkegyGnvviidhgdg.ystlyahlskisvkegqkVkaGqvI 69  
                     pk   ++A ++G+V f ++++g   ++i + ++   + l+    +i+v eg++V++G+v+
     EGE27687.1 1143 PKDHAIMAEMSGVVSFGKETKGKNRFIITNEDGDvHEELIPKWRQINVFEGETVERGEVV 1202
                     56778***********99987777777777755536677788999*************98 PP

>> Apocytochr_F_C  Apocytochrome F, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0021       4.2      23      62 ..     981    1021 ..     951    1026 .. 0.79
   2 ?    4.9   0.0     0.013        26      25      64 ..    1079    1118 ..    1058    1126 .. 0.88
   3 !   13.7   0.0   2.4e-05     0.048       8      64 ..    1151    1206 ..    1145    1209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0021
                      EEEEEEETSTSEEE.-EEEESSS-BS--ST-EE-TT-BSC- CS
  Apocytochr_F_C   23 gtevtietedgeav.vetipaGpelivsegqevkagealtn 62  
                      + e+ +++++g++    ++p G +++v++ ++v+ag+ +++
      EGE27687.1  981 SAEIGVADDQGREReRYKVPYGSSVLVRDADAVEAGQVIAK 1021
                      667888888887763679*******************9875 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
                      EEEEETSTSEEE-EEEESSS-BS--ST-EE-TT-BSC--- CS
  Apocytochr_F_C   25 evtietedgeavvetipaGpelivsegqevkagealtndP 64  
                      ++ ++t++g++vv  +p+ + + vseg++v+ag+ l   P
      EGE27687.1 1079 AIILDTDEGKEVVYFLPNETIIRVSEGEHVTAGSVLGRVP 1118
                      677899****************************998777 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 2.4e-05
                      SSSEEEEEEEEEESSEEEEEEETSTSEEE-EEEESSS-BS--ST-EE-TT-BSC--- CS
  Apocytochr_F_C    8 saaGtiskiekeekggtevtietedgeavvetipaGpelivsegqevkagealtndP 64  
                       ++G + +  ke+kg+++  i++edg++ +e ip+  ++ v eg++v+ ge +++ P
      EGE27687.1 1151 EMSGVV-SFGKETKGKNRFIITNEDGDVHEELIPKWRQINVFEGETVERGEVVSDGP 1206
                      555544.56788999*************************************99988 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.1     1e+04      33      44 ..     162     173 ..     162     185 .. 0.83
   2 ?    9.4   0.0   0.00046      0.93      15      35 ..    1004    1024 ..    1003    1026 .. 0.89
   3 ?    1.2   0.0      0.16   3.3e+02      16      30 ..    1100    1114 ..    1098    1118 .. 0.88
   4 ?   -0.7   0.1      0.65   1.3e+03      15      29 ..    1187    1201 ..    1186    1202 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.1
  Biotin_lipoyl_2  33 lDsralqlalaq 44 
                      lD++++ +al q
       EGE27687.1 162 LDDEEYFNALEQ 173
                      89********99 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00046
  Biotin_lipoyl_2   15 qlnVkdGqrVkaGdvLaelDs 35  
                       +++V+d + V+aG+v+a  D+
       EGE27687.1 1004 SVLVRDADAVEAGQVIAKWDP 1024
                       79**************98765 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.16
  Biotin_lipoyl_2   16 lnVkdGqrVkaGdvL 30  
                       ++V +G +V aG vL
       EGE27687.1 1100 IRVSEGEHVTAGSVL 1114
                       789*********998 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.65
  Biotin_lipoyl_2   15 qlnVkdGqrVkaGdv 29  
                       q+nV +G  V+ G v
       EGE27687.1 1187 QINVFEGETVERGEV 1201
                       89***********87 PP

>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.4   8.7e+03      32      84 ..     574     625 ..     556     627 .. 0.72
   2 ?    0.4   0.1      0.34   6.9e+02      34      98 ..     680     745 ..     669     753 .. 0.81
   3 ?    7.9   0.0    0.0017       3.3      28      74 ..    1210    1256 ..    1205    1272 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.4
      ApbA_C  32 espelralvrallkEalavaeaegvelseerleeaveavlektaanrsSMlqD 84 
                 ++ ++r l+++++ E +a  e +  e++++++ + ++ + +k   + s M  D
  EGE27687.1 574 DTVAGRLLIWNIMPEGMAFSECNT-EMTKKNISKLLNSCYRKLGVKESVMFAD 625
                 556677788888888888775544.6777778888877777777777777776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.34
      ApbA_C  34 pelralvrallkEalavaeaegvelseerleeaveavlektaanrsSMlqDv.eagrktEidyinG 98 
                 ++++++v+  ++ + ++a+a+  +ls++++ +a  ++ ++++ n+  M+ D  ++g  t i+++ G
  EGE27687.1 680 ERYNKVVDIWARTSDKIANAMMDNLSKDDVINADGETETQKSFNSIYMMADSgARGSATQIRQLAG 745
                 566777778888888999999999****99999999999999999999999724566888888877 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0017
      ApbA_C   28 gellespelralvrallkEalavaeaegvelseerleeaveavlekt 74  
                  +++l+ +   al++ +++E+ +v++ +gv+++++ +e +v++ l+k+
  EGE27687.1 1210 HDILRLKGETALANYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRKV 1256
                  566777777899999*******************9998888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.42
# Mc/sec: 9993.55
//
Query:       EGE27688.1  [L=408]
Description: D-3-phosphoglycerate dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-53  179.3   0.0      8e-53  178.4   0.0    1.5  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    3.1e-38  130.4   0.1    3.9e-38  130.1   0.1    1.1  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    1.2e-07   32.1   0.2    2.5e-07   31.0   0.2    1.6  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
    3.3e-06   26.8   0.0    6.3e-06   25.9   0.0    1.5  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
    5.6e-06   26.0   0.5    2.5e-05   24.0   0.1    2.3  2  ACT            ACT domain
    0.00075   19.6   0.0     0.0017   18.5   0.0    1.5  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
  ------ inclusion threshold ------
      0.032   14.7   0.0       0.12   12.9   0.0    1.9  2  XdhC_C         XdhC Rossmann domain
      0.033   14.0   0.1       0.11   12.3   0.1    1.9  1  Rossmann-like  Rossmann-like domain
       0.18   11.7   0.9        1.9    8.3   0.6    2.5  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.4   0.0     4e-56     8e-53       3     178 .]     118     293 ..     116     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 178.4 bits;  conditional E-value: 4e-56
                   HHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S CS
  2-Hacid_dh_C   3 lllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhl 99 
                     ++l+r ++e ++ v++g w +++a  ++e++gkt+Gi+G+G+IG+++  +++++gmkvi++d   k       +  ++ sleell+++D+v+lh+
    EGE27688.1 118 ETIMLMRGIPEKNAVVHRGGW-NKSAKDSYEVRGKTMGIVGYGSIGSQLSVLAESLGMKVIYHDAMTKLPL---GNATQVGSLEELLSKADVVTLHV 210
                   57899****************.99******************************************88544...2234677**************** PP

                   --STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTC....HHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C 100 pltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplped....spllelpnviltPHia 178
                   p + +tr++++a+++++mk+g+++iN++RG+ vd +aL++aL+s+ki gaa+Dvf +ep ++d    spl+ ++nviltPH++
    EGE27688.1 211 PDSSSTRNIMTAKAFEQMKDGSFFINASRGSCVDIDALAAALESKKILGAAIDVFPKEPKSADeefeSPLRAFDNVILTPHVG 293
                   *************************************************************995555588***********97 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   0.1     2e-41   3.9e-38       2     134 .]      13     325 ..      12     325 .. 0.99

  Alignments for each domain:
  == domain 1  score: 130.1 bits;  conditional E-value: 2e-41
                 EEEST.CHHHHHHHHHTTE.EEEEES.CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHH CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   2 lileplreeelellkeegv.evevkd.ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesv 98 
                 l+le ++e++l+ l+e+g+ ++e+ + +l+++el+ek+kda+++ +rs+t++t++vlea++kL +i+++++G+++vDldaa e+G+ V+n+p+++t+sv
  EGE27688.1  13 LLLEGVHENALKVLNEAGYtNIEYISsALDEAELIEKIKDAHFIGIRSRTQLTRKVLEAAEKLICIGCYCIGTNQVDLDAALELGVPVFNAPYSNTRSV 111
                 789999**********9*99******899999******************************************************************* PP

                 HHHH............................................................................................... CS
                 xxxx............................................................................................... RF
  2-Hacid_dh  99 AElt............................................................................................... 102
                 AEl+                                                                                               
  EGE27688.1 112 AELVlaetimlmrgipeknavvhrggwnksakdsyevrgktmgivgygsigsqlsvlaeslgmkviyhdamtklplgnatqvgsleellskadvvtlhv 210
                 *************************************************************************************************** PP

                 ...................................................................................T-BHHHHHHHHHHHHH CS
                 ...................................................................................xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...................................................................................aaTeeaqeniaeeaae 118
                                                                                                    ++T+eaq ni+ e+ae
  EGE27688.1 211 pdssstrnimtakafeqmkdgsffinasrgscvdidalaaaleskkilgaaidvfpkepksadeefesplrafdnviltphvgGSTQEAQANIGLEVAE 309
                 *************************************************************************************************** PP

                 HHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 119 nlvaflkgespanavn 134
                 ++v++ +++++++avn
  EGE27688.1 310 KFVRYSDQGDTTSAVN 325
                 **************98 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.2   1.3e-10   2.5e-07       2     109 ..     153     257 ..     152     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.3e-10
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssped 96 
                    +g++G G +Gs++    ++ g+kv+ ++    ++++l   +a+ + s+eel++++dvv + v++++ ++++++   +e++k g+++i+ s  s  d
     EGE27688.1 153 MGIVGYGSIGSQLSVLAESLGMKVIYHD----AMTKLPLGNATQVGSLEELLSKADVVTLHVPDSSSTRNIMTAkAFEQMKDGSFFINASRGSCVD 244
                    79***********************999....6688888999******************************999********************* PP

                    HHHHHHHHHHTT- CS
  NAD_binding_2  97 trelakelkekgl 109
                       la++l++k++
     EGE27688.1 245 IDALAAALESKKI 257
                    ********99986 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.2e-09   6.3e-06       2      96 ..     148     240 ..     147     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.2e-09
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHH.HHHHHHHHTGGG--TT-E.EEESSS CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDel.qkevyeeeiepnlkegka.lafahG 96 
                 ++gk++ ++GyGs G   +      g++v++    ++        ++ +v +++e+ +kadvv++ +PD+   +++++++  +++k+g+  +  + G
  EGE27688.1 148 VRGKTMGIVGYGSIGSQLSVLAESLGMKVIYHDAMTK----LPLGNATQVGSLEELLSKADVVTLHVPDSSsTRNIMTAKAFEQMKDGSFfINASRG 240
                 579************9998888888****99766666....5555666899******************8625799**********99951444455 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   2.3e+03      27      64 ..      33      52 ..      24      76 .. 0.52
   2 !   24.0   0.1   1.2e-08   2.5e-05       8      66 ..     345     399 ..     339     400 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
                EEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHT CS
         ACT 27 Nidsieqrssedkvagivfvvivvdeedleevlealkk 64
                Ni+ i+++ +e +                  ++e++k+
  EGE27688.1 33 NIEYISSALDEAE------------------LIEKIKD 52
                4444444444444..................4444433 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 1.2e-08
                 ESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT   8 pDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66 
                 +++PG+L+++ + +ad+giNi+  +  + +d       +v  vd++d + +l++l++++
  EGE27688.1 345 RNVPGVLSQINASFADAGINIIAQSLMTKGD----VGYLVMDVDDNDSDRALKRLRAVP 399
                 69***************************77....888888999999999999999987 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.4e-07    0.0017      21     124 ..     148     251 ..     139     266 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.4e-07
                    -TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE....-SSSSSSB-HHHHCCS-TTEEEEE-SST CS
  AdoHcyase_NAD  21 laGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvt....ttGnkdiitlehlkkmkddaivcniGhf 112
                    + Gk++ ++GyG +G   +   ++lG +vi    d ++ l  + +  +v  lee+++kad+v      ++ +++i+t++ +++mkd +   n    
     EGE27688.1 148 VRGKTMGIVGYGSIGSQLSVLAESLGMKVIYH--DAMTKLP-LGNATQVGSLEELLSKADVVTLhvpdSSSTRNIMTAKAFEQMKDGSFFINASRG 240
                    679****************999****999976..5666664.457789************9864222267899***************99998764 PP

                    TTTBTHHHHHTT CS
  AdoHcyase_NAD 113 dseidvaalean 124
                    +  +d++al+a 
     EGE27688.1 241 S-CVDIDALAAA 251
                    3.3566666554 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.2   4.4e+03      77      89 ..      58      70 ..      22      95 .. 0.56
   2 ?   12.9   0.0     6e-05      0.12       2      68 ..     154     255 ..     153     262 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.2
                -HHHHHHHCTTS. CS
      XdhC_C 77 Srkkaarrlerlr 89
                 r++++ +++ l+
  EGE27688.1 58 IRSRTQLTRKVLE 70
                2222233333322 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6e-05
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG..................................-GGG-TT-SE.-EEEE--S-HHHHHHHHHHHS CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa..................................tkerfpeade.tavvvlthdhklDaealeaal 65 
                  i+G g ++ +l  la++lg++v+  d+ +++                                   t++ f++ ++ ++++ ++++   D +al+aal
  EGE27688.1 154 GIVGYGSIGSQLSVLAESLGMKVIYHDAMTKLPlgnatqvgsleellskadvvtlhvpdssstrnimTAKAFEQMKDgSFFINASRGSCVDIDALAAAL 252
                 59***************************9877898888888888888888877777777766666555555555559********************* PP

                 SS- CS
      XdhC_C  66 rkk 68 
                 ++k
  EGE27688.1 253 ESK 255
                 533 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.8e-05      0.11      13     112 ..     153     246 ..     143     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-05
  Rossmann-like  13 vGiisaGrvGtalgaaleraghvvvgisaisaasreraerrlPdvpvlevedvaaraellllavPdaelpglvkglaatgavraGtivahtsganG 108
                    +Gi++ G +G+ l++  e  g +v+   a+++     a      ++v ++e++  +a+++ l vPd+  +  +    a + +++G   + +s    
     EGE27688.1 153 MGIVGYGSIGSQLSVLAESLGMKVIYHDAMTKLPLGNA------TQVGSLEELLSKADVVTLHVPDSSSTRNIMTAKAFEQMKDGSFFINASRGSC 242
                    68888899998888888888888876666665554444......45678899****************999999999999******9999998888 PP

  Rossmann-like 109 veil 112
                    v+i 
     EGE27688.1 243 VDID 246
                    8774 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.6   0.00096       1.9       2      54 ..     153     204 ..     152     237 .. 0.70
   2 ?    2.3   0.0     0.067   1.3e+02      71     129 ..     194     255 ..     183     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00096
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTS CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgk 54 
                  +++G G +G+++  ++ s g++V   d  ++     + ++  sle+l +k  
  EGE27688.1 153 MGIVGYGSIGSQLSVLAESLGMKVIYHDAMTKLPLGNATQVG-SLEELLSKAD 204
                 68***********************99987765544444444.3555555554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.067
                 S-HHHHH.C-SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEE..EE--SSS-HHHHCCCSSSG CS
     3HCDH_N  71 tdleeav.dadlviEavvEnlelKrkvfaelekiakpdail..asnTSslsiselaealkrp 129
                  +lee+  +ad+v   v+++ +  + + a+  +++k+ +++  as  S ++i++la+al+++
  EGE27688.1 194 GSLEELLsKADVVTLHVPDSSSTRNIMTAKAFEQMKDGSFFinASRGSCVDIDALAAALESK 255
                 56788888999999999999999999999999999998866458999**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2956.73
//
Query:       EGE27689.1  [L=456]
Description: glutathione reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-65  221.3   5.8    2.1e-65  220.9   5.8    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.2e-35  120.0   1.8    1.4e-34  118.7   0.2    2.4  3  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    5.1e-18   65.4   0.6    5.1e-18   65.4   0.6    3.2  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    9.1e-17   61.3   0.8    9.1e-17   61.3   0.8    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    5.6e-06   25.7   0.0    9.5e-06   25.0   0.0    1.4  1  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    1.4e-05   24.0   9.6    0.00094   18.0   0.4    3.7  4  HI0933_like    HI0933-like protein
     0.0028   17.0   2.6      0.074   12.3   0.3    2.4  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.016   14.3   9.5        0.2   10.7   0.1    3.5  4  FAD_binding_2  FAD binding domain
      0.027   13.8   0.5       0.05   12.9   0.1    1.7  2  FAD_oxidored   FAD dependent oxidoreductase
      0.075   13.5   0.2        4.6    7.7   0.0    3.1  3  NAD_binding_7  Putative NAD(P)-binding
      0.085   12.7   0.5        4.4    7.2   0.1    2.4  2  Tudor_3        DNA repair protein Crb2 Tudor domain
       0.11   11.7   0.1         10    5.3   0.0    2.2  2  Amino_oxidase  Flavin containing amine oxidoreductase
       0.16   12.3   0.0          3    8.2   0.0    2.3  2  DUF2442        Protein of unknown function (DUF2442)
       0.48    9.5  14.5      0.023   13.8   2.0    3.3  3  GIDA           Glucose inhibited division protein A
       0.78    9.3  16.7        0.8    9.2   0.1    3.6  4  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.9   5.8   1.8e-68   2.1e-65       2     294 .]       6     324 ..       5     324 .. 0.97

  Alignments for each domain:
  == domain 1  score: 220.9 bits;  conditional E-value: 1.8e-68
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH.........................HHHHCHHHHCCCCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias.........................evvkklnqgielll 71 
                  d++ iGgG +G+a   ++aq+g k +++e    +gtc+n+gc+++k+++ +a+ a+ ++                           ++++  +++++ 
   EGE27689.1   6 DYLAIGGGSGGIASINRAAQYGKKCAIIEanlIGGTCVNVGCVPKKVMWYAAQIADAIHkyapdygfkgnidefnfgqliqsrqAYIERIHRSYRMVF 103
                  6778*************************99*************************999************************988999999****** PP

                  CCTCEEEEESCEEEEETEEEC.....TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  72 geevvkidpgkkkvklekkke.....gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalakl 164
                  ++++v++++g +++ +++++e     g +e+i +d++v+AtG+++ +++i G  e +      +ds+  + l+++pkr++++G+Gy++vE+A+++++l
   EGE27689.1 104 ERNGVELIQGFARFIDKNTVEvayddGTTEQISADHIVIATGGQTVRPDIIGQ-ELG------IDSDGFFALDEMPKRVAIIGAGYVAVEVAGVMNSL 194
                  ********************9*****9**************************.555......8********************************** PP

                  T-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Pyr_redox_2 165 gkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge.klevvledgeeidadlvvvavGvrpstelle.eklglelderggivv 260
                  g++++l+ +++++lr++d+++ + l ++++++G+++++g + ++i++n++  l+v+ +dg+ + +d+v++avG++p t+ l+ +++g++++ +g+i +
   EGE27689.1 195 GAQTHLMIRGNQPLRSFDDDIVEVLVNVMQNDGIQIHTGVNTQQIIQNEDkTLTVEFNDGQNLTVDCVIWAVGRKPATDQLNlDAVGIKTNTKGQIIT 292
                  **************************************************8888******************************************** PP

                  -TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 261 deflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  d+f++tn++giya+GD++   +g+el+++Av++G
   EGE27689.1 293 DKFQNTNIEGIYAVGDIV--ANGVELTPVAVASG 324
                  *****************9..9*********9987 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.9   4.7e+03      27      57 ..      93     129 ..      86     148 .. 0.60
   2 ?   -1.2   0.0         2   2.4e+03      47      84 ..     284     322 ..     233     334 .. 0.77
   3 !  118.7   0.2   1.2e-37   1.4e-34       1     109 [.     345     455 ..     345     456 .] 0.98

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.9
                    G..EEEEEEEEECGHHHCHTTH....TEEEEEEEEET CS
  Pyr_redox_dim  27 e..ikvgkfpfkangralayae....tkgfvKlvada 57 
                    e   + +++ f+ ng  l++++    +k +v + +d 
     EGE27689.1  93 EriHRSYRMVFERNGVELIQGFarfiDKNTVEVAYDD 129
                    5555666777777777777666555555555555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2
                    TEEEEEEEEET.TTTBEEEEEEECTTHHHHHHHHHHHHH CS
  Pyr_redox_dim  47 tkgfvKlvada.ktgkvlGahivGpgageliqelavaik 84 
                    t++   +++d+ ++  + G+  vG+ ++  ++   va+ 
     EGE27689.1 284 TNTKGQIITDKfQNTNIEGIYAVGDIVANGVELTPVAVA 322
                    555567888888899999999999888776665555555 PP

  == domain 3  score: 118.7 bits;  conditional E-value: 1.2e-37
                    BEEEEESSSEEEEEES-HHHHHHHHSG..EEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHT CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagie..ikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedlad 94 
                    +ptv+f++p++++vGl+e++A  ++++  ikv++++f++++ a++++++ + +Klv+  +++k++G+h +G g++e+iq++ava+k+g+t++d++d
     EGE27689.1 345 VPTVIFSHPPIGTVGLSEASAIVQYGAdnIKVYTSNFTPMYSAVTSHREPCRMKLVCLGEEQKIIGLHGIGFGMDEMIQGFAVAMKMGATKQDFDD 440
                    7*************************99******************************************************************** PP

                    SBSSSSSTGGGGHCH CS
  Pyr_redox_dim  95 tihihPtlsealkea 109
                    ti+ihPt +e+++++
     EGE27689.1 441 TIAIHPTAAEEFVTM 455
                    ************997 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2       1.3   1.6e+03       5      30 ..      10      35 ..       7      36 .. 0.91
   2 !   65.4   0.6   4.3e-21   5.1e-18       1      80 [.     174     253 ..     174     254 .. 0.95
   3 ?   -2.2   0.0       5.4   6.5e+03       8      23 ..     356     371 ..     356     379 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.3
                ECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  5 vGgGyiglElAgalaelgkkVtvver 30
                +GgG  g+   + +a++gkk  ++e+
  EGE27689.1 10 IGGGSGGIASINRAAQYGKKCAIIEA 35
                9*******************999986 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 4.3e-21
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg.vesvklkd 80 
                 +v+++G+Gy+++E+Ag+++ lg++++++ r++++lr +D+++ ++l + +++ gi+++++ ++++i ++ed+ ++ v+++d
  EGE27689.1 174 RVAIIGAGYVAVEVAGVMNSLGAQTHLMIRGNQPLRSFDDDIVEVLVNVMQNDGIQIHTGVNTQQIIQNEDKtLT-VEFND 253
                 79*********************************************************************9555.88766 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.4
                 SHHHHHHHHHHHHTTS CS
   Pyr_redox   8 GyiglElAgalaelgk 23 
                 G++gl +A+a+ ++g+
  EGE27689.1 356 GTVGLSEASAIVQYGA 371
                 8899999999999985 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   3.2      0.11   1.3e+02       3      34 ..      10      40 ..       8      45 .. 0.89
   2 !   61.3   0.8   7.6e-20   9.1e-17     119     305 .]     131     307 ..      86     307 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.11
  Pyr_redox_3  3 iGaGPaGlaaaielkkagledylilEkgnign 34
                 iG+G  G+a+   + + g  +  i+E + ig 
   EGE27689.1 10 IGGGSGGIASINRAAQYGK-KCAIIEANLIGG 40
                 9*****************9.799***998875 PP

  == domain 2  score: 61.3 bits;  conditional E-value: 7.6e-20
  Pyr_redox_3 119 sketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdien 216
                  ++e+++A++++iAtG   +  +++i G+e l + +  + +++    ++v++iG++  av++A  + + ga+ ++++rg+       +p  s   di +
   EGE27689.1 131 TTEQISADHIVIATGG--QTVRPDIIGQE-LGIDSDGFFALD-EMPKRVAIIGAGYVAVEVAGVMNSLGAQTHLMIRGN-------QPLRSFDDDIVE 217
                  4679***********8..8899******9.9*********95.55799******************************8.......5888999***** PP

  Pyr_redox_3 217 rleelvkeekikvlfnaevkei.kekeeeykvktedgkkvevkddvvlatGykpdlsflkk..slfeldedgrpvlteeteetnvpglflaG 305
                   l ++++++ i++++  ++++i ++++++ +v+++dg++++v d v+ a+G kp +++l+    +++++ ++   +t++ + tn++g++ +G
   EGE27689.1 218 VLVNVMQNDGIQIHTGVNTQQIiQNEDKTLTVEFNDGQNLTV-DCVIWAVGRKPATDQLNLdaVGIKTN-TKGQIITDKFQNTNIEGIYAVG 307
                  ********88****9998887626778889*********999.778***********987754667764.55566788999********998 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   7.9e-09   9.5e-06     134     250 ..     122     229 ..     106     267 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 7.9e-09
  K_oxygenase 134 tveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealepl 231
                  tve++ ++g++e+++a ++v+++G++   P+++ +       + s+ +       + +kr+a++G+G  a e++  + +  +  + +l++r+++   +
   EGE27689.1 122 TVEVAYDDGTTEQISADHIVIATGGQTVRPDIIGQEL----GIDSDGFFALD---EMPKRVAIIGAGYVAVEVAGVMNSLGA--QTHLMIRGNQPLRS 210
                  56776799************************99644....58888887765...799***************876665554..88899999998888 PP

  K_oxygenase 232 ddspfvneifsPeyvdyfy 250
                   d ++v  +++    d + 
   EGE27689.1 211 FDDDIVEVLVNVMQNDGIQ 229
                  8888877666655555555 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.5     0.011        13       2      32 ..       6      36 ..       5      45 .. 0.89
   2 !    5.4   0.3    0.0051       6.1     143     167 ..     123     149 ..     104     196 .. 0.77
   3 !   18.0   0.4   7.9e-07   0.00094     109     164 ..     213     268 ..     182     274 .. 0.92
   4 ?   -3.1   0.0         2   2.4e+03     251     272 ..     326     348 ..     313     349 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 d + iGgG  G+    +aa+ gk+ +++e++
   EGE27689.1  6 DYLAIGGGSGGIASINRAAQYGKKCAIIEAN 36
                 5677*************************87 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0051
                  EEEEE...TTEEEEESEEEE----SS- CS
  HI0933_like 143 frvkt..kseeeleadklvlAtGGlSi 167
                  ++v++   ++e+++ad++v+AtGG+ +
   EGE27689.1 123 VEVAYddGTTEQISADHIVIATGGQTV 149
                  444442136889************976 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 7.9e-07
                  HHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 109 edivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                   div++l++ +++ g+++++  + +++ ++ed++++v+ +++++l+ d ++ A+G 
   EGE27689.1 213 DDIVEVLVNVMQNDGIQIHTGVNTQQIIQNEDKTLTVEFNDGQNLTVDCVIWAVGR 268
                  68***************************************************996 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2
                  T-.......-TT--EEEECSTTS CS
  HI0933_like 251 yvakale.kkeeetleidllPdl 272
                   +++ l  +k++e+le++l+P +
   EGE27689.1 326 RLSERLFnNKPDEHLELNLVPTV 348
                  45555665999*********975 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.019        23      31      60 ..       7      36 ..       2      68 .. 0.88
   2 !   12.3   0.3   6.2e-05     0.074      28      94 ..     172     239 ..     168     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.019
                 EEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvr 60
                  l iGgG  G+++i+ a++ g k  +++ +
   EGE27689.1  7 YLAIGGGSGGIASINRAAQYGKKCAIIEAN 36
                 578********************9999987 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.2e-05
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEEHCHHHHHHHHHHHH-SE CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvevlksqeellaeavkeadv 94 
                  p +v +iG+G + ++ + + ++lga++ ++    + l+ +++ + +  v+v++++  +++  v+++++
   EGE27689.1 172 PKRVAIIGAGYVAVEVAGVMNSLGAQTHLMIRGNQPLRSFDDdIVEVLVNVMQNDGIQIHTGVNTQQI 239
                  679*************************9999999999999887777788888888888877777666 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   1.5     0.004       4.8       1      30 [.       6      35 ..       6      42 .. 0.93
   2 ?    0.1   0.0      0.27   3.2e+02     179     202 ..     125     147 ..      89     162 .. 0.80
   3 ?   -1.4   0.0      0.81   9.7e+02     142     180 ..     214     252 ..     174     261 .. 0.82
   4 ?   10.7   0.1   0.00017       0.2     374     406 ..     280     314 ..     272     317 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.004
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvek 30
                   D + iG+G +G a+  +aa+ G+k+a++e 
     EGE27689.1  6 DYLAIGGGSGGIASINRAAQYGKKCAIIEA 35
                   6789************************96 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.27
                    EEETTTTCEEEEEESEEEE----- CS
  FAD_binding_2 179 venpesgrevrirakavvlatgGf 202
                    v+  ++g++++i a+++v+atgG 
     EGE27689.1 125 VA-YDDGTTEQISADHIVIATGGQ 147
                    33.37899999***********95 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.81
                    HHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEE CS
  FAD_binding_2 142 allarlvesarkagvdfqerteadeLivedgrvtGavve 180
                     ++++lv+ +++ g+++++  + +++i+++++  +++++
     EGE27689.1 214 DIVEVLVNVMQNDGIQIHTGVNTQQIIQNEDKTLTVEFN 252
                    688899999988889999999999999988877777666 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00017
                    -EEEBETTSBE..STTEEESSBTEEE-STCEESSS CS
  FAD_binding_2 374 gGvetdengrv..ldadgqpipGLYAaGevaaggv 406
                     G++t+++g+   ++ ++++i+G YA+G   a gv
     EGE27689.1 280 VGIKTNTKGQIitDKFQNTNIEGIYAVGDIVANGV 314
                    6*********9888889************998887 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.2e-05      0.05       4      53 ..       9      57 ..       6     144 .. 0.75
   2 ?   -2.0   0.1       1.5   1.8e+03      83     127 ..     210     253 ..     187     263 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
  FAD_oxidored  4 VvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee 53
                   +GGg++G+a    Aa+ G+k +++e  + +GG+  + +  +   ++ ++
    EGE27689.1  9 AIGGGSGGIASINRAAQYGKKCAIIEA-NLIGGTCVNVGCVPKKVMWYAA 57
                  69***********************97.5899999988876666655555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
  FAD_oxidored  83 tfepevakavleemlaeagvtvllntrlvevekegkriesvtves 127
                   +f+ ++++ vl ++++++g+++ ++   +++++++++   v++++
    EGE27689.1 210 SFDDDIVE-VLVNVMQNDGIQIHTGVNTQQIIQNEDKTLTVEFND 253
                   56666655.445555666999999999999999987888888854 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.38   4.5e+02      11      40 ..       8      37 ..       2     150 .. 0.74
   2 ?    7.7   0.0    0.0038       4.6       7      41 ..     172     209 ..     166     282 .. 0.64
   3 ?    0.2   0.0      0.85     1e+03      16      42 ..     356     383 ..     355     438 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.38
  NAD_binding_7 11 lvvGgGevAarkvrklleagakvtvvapev 40
                   l +GgG+ +   +++ +++g+k  ++  ++
     EGE27689.1  8 LAIGGGSGGIASINRAAQYGKKCAIIEANL 37
                   779999999999999999999999987764 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0038
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapev...k 41 
                     k+v ++G+G vA + +  + + ga+ +++        
     EGE27689.1 172 PKRVAIIGAGYVAVEVAGVMNSLGAQTHLMIRGNqplR 209
                    699************99999999999999766643332 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.85
  NAD_binding_7  16 GevAarkvrklleagak.vtvvapevke 42 
                    G+v+++ ++ ++++ga+ ++v++ ++++
     EGE27689.1 356 GTVGLSEASAIVQYGADnIKVYTSNFTP 383
                    899************7549998888533 PP

>> Tudor_3  DNA repair protein Crb2 Tudor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0037       4.4      30      49 ..     121     140 ..     116     140 .. 0.87
   2 ?    3.0   0.0     0.077        92      28      45 ..     244     260 ..     238     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0037
                 SEEEEEETTS-EEEEETTSE CS
     Tudor_3  30 qrykVrFdDgtpeevdskqv 49 
                 ++++V +dDgt+e+++++++
  EGE27689.1 121 NTVEVAYDDGTTEQISADHI 140
                 4789***********99986 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.077
                 SSSEEEEEETTS-EEEEE CS
     Tudor_3  28 gsqrykVrFdDgtpeevd 45 
                 ++ +++V+F Dg+  +vd
  EGE27689.1 244 DK-TLTVEFNDGQNLTVD 260
                 33.89*******999987 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0086        10     237     265 ..     119     149 ..     105     159 .. 0.85
   2 ?    4.2   0.0     0.018        21     219     261 ..     224     267 ..     193     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0086
                    ETTCEEEEETTSTEE..EESEEEE-S-HHHH CS
  Amino_oxidase 237 egdgvtvtledgevv..eaDaVvvTvplgvl 265
                    ++++v v + dg++   +aD++v+++   ++
     EGE27689.1 119 DKNTVEVAYDDGTTEqiSADHIVIATGGQTV 149
                    7899********99999*******9987665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.018
                    TTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEEEESEEEE-S- CS
  Amino_oxidase 219 elrgldirlntrVkeikr.egdgvtvtledgevveaDaVvvTvp 261
                    +  g +i+++    +i + e+ + tv++ dg+++++D V+ +v 
     EGE27689.1 224 QNDGIQIHTGVNTQQIIQnEDKTLTVEFNDGQNLTVDCVIWAVG 267
                    45677899999999999955555*****************9986 PP

>> DUF2442  Protein of unknown function (DUF2442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.36   4.3e+02       5      27 ..     116     138 ..     115     150 .. 0.80
   2 ?    8.2   0.0    0.0025         3       5      26 ..     240     261 ..     237     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.36
                 EEETTTEEEEEETT--EEEE-TT CS
     DUF2442   5 kptddyklyvyfddGrellvdls 27 
                 +++d  ++ v +ddG +  + ++
  EGE27689.1 116 RFIDKNTVEVAYDDGTTEQISAD 138
                 677788*********98776665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0025
                 EEETTTEEEEEETT--EEEE-T CS
     DUF2442   5 kptddyklyvyfddGrellvdl 26 
                 +  +d +l+v+f+dG+ l+vd+
  EGE27689.1 240 IQNEDKTLTVEFNDGQNLTVDC 261
                 556778**************97 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.0     2e-05     0.023       5     150 ..      10     146 ..       6     160 .. 0.77
   2 ?    2.1   1.2     0.069        83       2      29 ..     175     202 ..     174     221 .. 0.85
   3 ?    0.3   0.1      0.24   2.9e+02     108     150 ..     225     268 ..     209     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
                 E-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT..-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-HHHHHH CS
        GIDA   5 iGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggiakgllvrEidalg..gliikaadkagiqfrilNrskGpavralraqvdrelysk 99 
                 iGgG  G++    aa+ G k ++i      +t+++++C p      ++++   i +          +d+ +          G+ +++ +a ++r  +++
  EGE27689.1  10 IGGGSGGIASINRAAQYGKKCAIIeaNLIGGTCVNVGCVPKKVMWYAAQIADAIHKYApdYGFKGNIDEFNF---------GQLIQSRQAYIER--IHR 97 
                 9***********************5445569**********9999999999999875421455567777777.........9999999555555..555 PP

                 HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEET.TS-EEEECEEEE--TT CS
        GIDA 100 evteklenepnleiieeeveeliveekkvkgvvte.dgetikakavviatGt 150
                 +++ + e+ + +e+i++ +  ++  +++v++ + + + e+i+a+++viatG 
  EGE27689.1  98 SYRMVFER-NGVELIQGFARFID--KNTVEVAYDDgTTEQISADHIVIATGG 146
                 66655655.99********9994..477777665524578999********7 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.069
                 EEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLit 29 
                 v +iG+G   +e A  +  lGa++ L+ 
  EGE27689.1 175 VAIIGAGYVAVEVAGVMNSLGAQTHLMI 202
                 89***********************983 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.24
                 STTEEEEES.-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 108 epnleiiee.eveeliveekkvkgvvtedgetikakavviatGt 150
                 ++ ++i ++ + +++i +e+k+  v  +dg+ ++ ++v+ a G 
  EGE27689.1 225 NDGIQIHTGvNTQQIIQNEDKTLTVEFNDGQNLTVDCVIWAVGR 268
                 4667777762456787888999******************9995 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   2.4      0.38   4.6e+02       3      36 ..       8      41 ..       6      69 .. 0.89
   2 ?    9.1   0.0   0.00072      0.86     147     204 ..      94     148 ..      86     162 .. 0.70
   3 ?   -2.2   0.8         2   2.4e+03       1      10 [.     174     183 ..     174     188 .. 0.83
   4 ?    9.2   0.1   0.00067       0.8     151     227 ..     218     293 ..     211     328 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.38
                EEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  3 viiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                + iGGG  G++    +a+ g   +++e++  +g g+
  EGE27689.1  8 LAIGGGSGGIASINRAAQYGkkCAIIEAN-LIG-GT 41
                569****************99*******9.777.55 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00072
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE...EECTEEEEEEEEEEE--GGGH CS
         DAO 147 kltaalaraaealGveilegtevtgleeedgkvwgve...rttpgendaadavVnaaGaws 204
                 +  ++++  +e++Gve+++g  ++ ++++    ++v     tt ++  +ad++V+a+G ++
  EGE27689.1  94 RIHRSYRMVFERNGVELIQG-FARFIDKN---TVEVAyddGTT-EQ-ISADHIVIATGGQT 148
                 5566778889**********.66667443...44553554433.22.25799******987 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2
                 EEEEECTSHH CS
         DAO   1 dvviiGGGii 10 
                 +v+iiG+G++
  EGE27689.1 174 RVAIIGAGYV 183
                 59******98 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00067
                 HHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEEEEE--G..GGHHHHHTT.CTTTSEE.EEEEEEEEEE CS
         DAO 151 alaraaealGveilegtevtgleeedgkvwgve.rttpgendaadavVnaaG..awsdllgll.keldlpi.spvrgqvlvl 227
                  l + +++ G++i++g + + + ++++k  +ve ++  g+n ++d+v+ a G  + +d+l+l+       i + ++gq+++ 
  EGE27689.1 218 VLVNVMQNDGIQIHTGVNTQQIIQNEDKTLTVEfND--GQNLTVDCVIWAVGrkPATDQLNLDaV----GIkTNTKGQIITD 293
                 577889***************855556778885533..777457********6666666622222....3327788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3192.20
//
Query:       EGE27690.1  [L=51]
Description: hypothetical protein EA1_01322 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 431.93
//
Query:       EGE27691.1  [L=357]
Description: beta-hexosaminidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-71  238.9   0.0    1.1e-70  238.6   0.0    1.0  1  Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.6   0.0     6e-75   1.1e-70      24     298 ..      20     293 ..       4     312 .. 0.94

  Alignments for each domain:
  == domain 1  score: 238.6 bits;  conditional E-value: 6e-75
                    HHHHHHH--SEEE--GGGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS.---S-HHHHHHHT-HH......HHHHHHHHHHH CS
  Glyco_hydro_3  24 aellkkyqvGgiilfaenledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgeg.tlfPsalalaatssld......likelgriiak 112
                     ell+++++Ggiilfa+n+++++q+++l++++rq   +      ll++vDqegG+v r++eg  ++P++  l++  +++      l+++ g  +a 
     EGE27691.1  20 IELLSNPEIGGIILFARNVKSPAQVRTLTDSIRQINPQ------LLIGVDQEGGRVARFKEGfSSLPAMGKLGQLYDKSpkdalsLAYDCGYLMAC 109
                    5899**********************************......******************************99999999999*********** PP

                    HHHHHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT-SSETTTSEEB----HHHHHHTTHHHHHHHH CS
  Glyco_hydro_3 113 elralgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdgavdshkelptvdhseeelrevdlvpfqaai 208
                    e+ a+g+d +faPv+d+  ++   ig+r+F+++p +  +l +++++G+++ag+a+t+KHFpghG  a dsh   + +++s +e+ + d + f + +
     EGE27691.1 110 EVLAVGVDFSFAPVLDIDGKSLV-IGDRAFHANPDAIITLSRQFMDGMKNAGMATTGKHFPGHGSIAPDSHIADAIDERSFDEIMDYDTQTFIKTL 204
                    *********************99.**********************************************************************99 PP

                    HTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SGHHHHHHH CS
  Glyco_hydro_3 209 eagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertseikalkka 298
                    + ++d+ M+aHv f+++d++pa  sk +++d+ R++lGFdGv++sD+l m+++ + gg + +vv+a++AG+D++Lv+++r+ ++ a++ a
     EGE27691.1 205 D-KLDALMPAHVVFSQVDDKPAGFSKIWIQDIVRNQLGFDGVIFSDDLCMQAAHIVGGIDARVVAAIEAGCDMALVCNHRQNALLAIETA 293
                    7.79****************************************************************************8665444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2436.93
//
Query:       EGE27692.1  [L=724]
Description: C-terminal processing peptidase-1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-44  150.5   0.6    6.2e-44  149.5   0.6    1.6  1  Peptidase_S41  Peptidase family S41
    2.9e-37  128.8   7.3      5e-37  128.0   7.3    1.4  1  TSP_NTD        Tail specific protease N-terminal domain
    1.4e-29  103.3   3.9    1.4e-29  103.3   3.9    2.6  2  DUF3340        C-terminal domain of tail specific protease (D
    1.8e-08   34.6   0.8    3.8e-08   33.6   0.8    1.6  1  PDZ            PDZ domain
    0.00051   19.8   1.3     0.0017   18.1   1.3    2.0  1  PDZ_6          PDZ domain
    0.00061   20.1   0.5     0.0014   18.9   0.5    1.7  1  PDZ_2          PDZ domain
  ------ inclusion threshold ------
      0.086   13.2   0.0       0.17   12.2   0.0    1.4  1  GRASP55_65     GRASP55/65 PDZ-like domain


Domain annotation for each model (and alignments):
>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.6   2.4e-47   6.2e-44       1     165 [.     390     567 ..     390     568 .. 0.96

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 2.4e-47
                    EEEEEEES-BCC...............THHHHHHHHHHHHHHTTSSEEEEE-TTB-EBEHHHHHHHHHCCSSSSEEEEEECTTSEEEEEEHTCSS- CS
  Peptidase_S41   1 kiGyiripsfse...............ktkeelakalkelkkknvkglilDlRnNgGGlldeavelaslflddglivstrgrdgkkkkksktekas 81 
                    k+G+i+ipsf                 + + + +kal+ l +++++gl++DlRnN+GG+lde+++++ +f+++g++v+ r+++g+ ++ ++t+ ++
     EGE27692.1 390 KVGVIEIPSFYLnfkarregidasqyrSVSHDTQKALQALTDQGIDGLVVDLRNNPGGSLDEVAKMLAMFIKEGPLVQIRDNRGNVQVFEDTDGGH 485
                    79********557899***********************************************************************999977777 PP

                    STT-BSSEEEEEE-TTBBTHHHHHHHHHHHTTSEEEEES--SB-EEEEEEEE-TTSSEEEEEEEEEEETTSBCTTTTS---SEE CS
  Peptidase_S41  82 eevqykgplvvLvnegsaSaseifagalkdngratlvGertfGkgtvqsvvelndgsalkltiakyltpdgrsiekkGvePdie 165
                      + y+g+l vL+n gsaSaseifa+a++d+g++++vG +t Gkgt q++++    ++++lt  k+++ +g+s+++kGv Pd+e
     EGE27692.1 486 --QFYDGKLSVLINLGSASASEIFAAAIQDYGLGLVVGSTTTGKGTAQTQRDDLALGSMTLTQRKFYRVNGGSTQTKGVVPDVE 567
                    ..57***********************************************9999999************************98 PP

>> TSP_NTD  Tail specific protease N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   7.3     2e-40     5e-37       4     192 ..      52     257 ..      49     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 2e-40
     TSP_NTD   4 kLereHykkkklddelskkvfdrYlkqLDpqklyflqsDidefe.kyreklddalkngdlsfaeeiynlyqkrieerkeyikellkkpfdfskdetlel 101
                  L r+Hy++++ld+++s+ ++++Y+++LDp+++++lqsD+def  ky ++   +l +gdl++  ei+++++ r  e  + +k++l++++d+ +++++ l
  EGE27692.1  52 LLDRAHYNDQRLDESMSQVILQQYFDKLDPNRTLLLQSDVDEFIsKYGKTYAAYLIRGDLTPGIEIFERFRTRSFEYFKAAKAHLATDIDLYTNKSIIL 150
                 4789*********************************************************************************************** PP

     TSP_NTD 102 drekapwakneaelkelwrkrlkneilaelklkskkdk.....................eikkskeelekryeeqlkrlsqrlekkksedvfelflnal 179
                 drekap   +++e+ e+w+++   +++ +++ ++ +dk                     e ++ ke l++r+++q +    +le+ k+++v+e +l a 
  EGE27692.1 151 DREKAPRFRSKKEQLEYWKNQTTLSLI-TIMINQDSDKakdqvylqnpelargqdlvkaESRTPKEILLNRIKRQEE----QLERLKNDEVMESILDAA 244
                 ***************************.5555544444567899999999999966554444444445555555555....5555************** PP

     TSP_NTD 180 assfDPHTsYfsp 192
                 a ++DPH++Y++p
  EGE27692.1 245 AIAYDPHSNYYAP 257
                 ***********98 PP

>> DUF3340  C-terminal domain of tail specific protease (DUF3340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.1      0.62   1.6e+03      65      93 ..     209     234 ..     195     249 .. 0.69
   2 !  103.3   3.9   5.3e-33   1.4e-29       2     152 ..     573     721 ..     572     723 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.62
     DUF3340  65 rkek.ktvsLnekkrkaereeqeakrlare 93 
                 ++   k++ Ln  kr++e+     +rl++ 
  EGE27692.1 209 ESRTpKEILLNRIKRQEEQL----ERLKND 234
                 33334899999999999988....333333 PP

  == domain 2  score: 103.3 bits;  conditional E-value: 5.3e-33
     DUF3340   2 dyeeiGEssldnALpWDkIspanykkygki.aallpkLkkksekRiakdpeFklleediawlkerkekktvsLnekkrkaereeqeakrlarenereka 99 
                 + +e+GE++++n+LpWD+I+++ny+  gk+ ++ll+ L+k+s++R+a+dp+F++l e  a++   ++kk    n++kr+a+ +  e+++la en+r++a
  EGE27692.1 573 EGIEFGEREYKNPLPWDTINSTNYHAEGKYsPSLLSSLNKQSKARQASDPQFRYLSELNAIRTLDDDKKPTEINLQKRRARLDMIEKRTLAAENARRQA 671
                 6689*************************98999***************************************************************** PP

     DUF3340 100 kglkplksllleknlekeeelekedekeaeeddpkdkekkDiylrEaanIlaD 152
                  g++p+ +  +   ++ + e+++e++++ +e++  + ++ ++y+ Eaa+ + D
  EGE27692.1 672 TGEAPFVDWST---YQANLEALAEERSAMKENERPKLPESEVYVFEAARLMFD 721
                 *******7755...45555555556666677777788899***********99 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.8   1.5e-11   3.8e-08       2      81 ..     263     348 ..     262     349 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.5e-11
                 EEEETS.TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETT.....EETTTSHHHHHHHHHHTTTS.EEEEEE CS
         PDZ   2 vsleke.grgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNg.....vdvenvsheeavqaikgskg.kvtLti 81 
                 ++++ + + +g+G+s++ ++++       + +++ gg+a+++g + ++D I+++ +     vd+ + s  e+v++i+g++g +vt+++
  EGE27692.1 263 IQIQNSlQLEGIGVSIRPDRKNP--DYTRIISLVDGGPAAKSGqILANDLIIGIAQsdgemVDTIGYSTREIVALIRGTRGtEVTVKV 348
                 566777799*********99998..999********99999999**********6666688888889*****************9998 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.3   6.8e-07    0.0017       2      55 ..     290     349 ..     289     350 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 6.8e-07
       PDZ_6   2 VtaVdpgsPAdrAG.lrvGDiilsv...NGqp..veglsladvaallrgsagesvvlvvr 55 
                 + + + g+PA++ G + ++D+i+ +   +G+   ++g+s+ +++al+rg  g++v+++v+
  EGE27692.1 290 IISLVDGGPAAKSGqILANDLIIGIaqsDGEMvdTIGYSTREIVALIRGTRGTEVTVKVK 349
                 566788*****************886667877336788888****************996 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.5   5.5e-07    0.0014       2      74 ..     273     357 ..     272     364 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.5e-07
                 ...XX------...-EEEEEE-TTSGGGGT..--TT-EEEEE...TTB--SSHHHHH...HHHHTS-TT-EEEEEEEE....TTE CS
       PDZ_2   2 ylGvsvsdeed.tggvlvvsVkeggPaakag.lkagDvilkv...dgkkvksledli...slllkkkpGdtVkltvlR....dgk 74 
                 ++Gvs++++++      ++s  +ggPaak+g + a+D i+ +   dg  v++         +l ++  G++V+++v+     d++
  EGE27692.1 273 GIGVSIRPDRKnPDYTRIISLVDGGPAAKSGqILANDLIIGIaqsDGEMVDTIGYSTreiVALIRGTRGTEVTVKVKQpntpDSQ 357
                 69****9998866788999*******************998855588888666555522245559999*******9985555555 PP

>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.8e-05      0.17      25      98 ..     271     348 ..     250     371 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.8e-05
                 SSSSSEEEEEEE-TTTTTS-EEEEEEBTTSHHHHHT--TTTEEEEEEE........SSSSSTSCSHHHHTTTSSS-EEEEE CS
  GRASP55_65  25 qgllGlslrlaslekaaeevwhvldvlegsPaakagLvpksDYiiGldk.......gllkgeedlselveaheekelkLlv 98 
                  + +G+s+r  + +    +  +++   +g+Paak+g +  +D iiG+ +       ++  +  +++ l++ ++ +e+++ v
  EGE27692.1 271 LEGIGVSIRPDRKN---PDYTRIISLVDGGPAAKSGQILANDLIIGIAQsdgemvdTIGYSTREIVALIRGTRGTEVTVKV 348
                 35577777766666...77889**************99*********9877766644444666777777776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:02.26
# Mc/sec: 969.69
//
Query:       EGE27693.1  [L=52]
Description: hypothetical protein EA1_01337 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-10   41.0  19.1    2.2e-10   40.5  19.1    1.2  1  DUF1328          Protein of unknown function (DUF1328)
  ------ inclusion threshold ------
       0.14   12.3   0.8       0.14   12.3   0.8    1.9  1  DUF3784          Domain of unknown function (DUF3784)
       0.26   11.0  11.2       0.45   10.2   1.3    2.0  2  DUF131           Protein of unknown function DUF131
       0.27    9.5   3.0       0.28    9.4   3.0    1.0  1  Silic_transp     Silicon transporter
       0.79    9.8   7.9       0.89    9.6   7.9    1.0  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
        1.6    8.0   3.7        1.7    7.9   3.7    1.0  1  CorA             CorA-like Mg2+ transporter protein
        1.8    8.6   7.8        2.3    8.3   7.8    1.2  1  DUF2892          Protein of unknown function (DUF2892)
        2.3    8.5   9.4         12    6.2   9.1    1.8  2  Bacteriocin_IId  Bacteriocin class IId cyclical uberolysin-li
        2.4    6.8   9.6        2.4    6.8   9.6    1.0  1  DUF2207          Predicted membrane protein (DUF2207)
        3.1    8.3   9.4        6.5    7.3   9.4    1.5  1  DUF202           Domain of unknown function (DUF202)
        7.8    6.1   8.9        9.7    5.8   8.9    1.1  1  Tetraspanin      Tetraspanin family


Domain annotation for each model (and alignments):
>> DUF1328  Protein of unknown function (DUF1328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5  19.1   1.4e-13   2.2e-10       1      39 []       6      44 ..       6      44 .. 0.99

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.4e-13
     DUF1328  1 liFLviAliAgvLGFgGiagaaagiAkiLFfiFlvlfvi 39
                +iF++iA+iA +LGFg+iag + ++A i+++i++vlfvi
  EGE27693.1  6 IIFAIIAIIASFLGFGNIAGLSKEFAYIFLIIAVVLFVI 44
                8*************************************8 PP

>> DUF3784  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.8   8.8e-05      0.14      38      63 ..      22      47 ..      21      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.8e-05
     DUF3784 38 dekklsrfmgivllligilflllgll 63
                ++++ls+   +++l+i+++++++g++
  EGE27693.1 22 NIAGLSKEFAYIFLIIAVVLFVIGFV 47
                5789********************98 PP

>> DUF131  Protein of unknown function DUF131
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   2.8    0.0046       7.5      43      60 ..       1      18 [.       1      20 [. 0.85
   2 ?   10.2   1.3   0.00028      0.45      38      60 ..      25      47 ..      22      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0046
      DUF131 43 laktaiiLaIilmillli 60
                + ++aii+aIi +i +++
  EGE27693.1  1 MFRWAIIFAIIAIIASFL 18
                5689*******9999987 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00028
      DUF131 38 GsdkrlaktaiiLaIilmillli 60
                G +k+ a++ +i+a++l+++ ++
  EGE27693.1 25 GLSKEFAYIFLIIAVVLFVIGFV 47
                77999**************9886 PP

>> Silic_transp  Silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.0   0.00017      0.28     363     412 ..       2      49 ..       1      51 [. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00017
  Silic_transp 363 flgaiittilasiawqlvasafpiaflsnplvyillviallleatGivaG 412
                   f+ aii +i+a ia  l      ia ls+ ++yi+l ia++l  +G v G
    EGE27693.1   2 FRWAIIFAIIAIIASFLGFG--NIAGLSKEFAYIFLIIAVVLFVIGFVGG 49 
                   66799999999999888654..69**********************9988 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.9   0.00055      0.89      41      84 ..       3      49 ..       1      51 [. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00055
  Phage_holin_3_6 41 gaagvlallalllllval..alala.alwlaalivaavllvlagvla 84
                       a ++a++a+++ ++++  +++l+   +  +li+a+vl+v++ v +
       EGE27693.1  3 RWAIIFAIIAIIASFLGFgnIAGLSkEFAYIFLIIAVVLFVIGFVGG 49
                     56888999999998888877788875699999**********99876 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.7     0.001       1.7     240     285 ..       4      45 ..       3      51 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
        CorA 240 ltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallail 285
                 +++if   ++i++++G  f+++ +l  ++ y f   +++++l++i+
  EGE27693.1   4 WAIIFAIIAIIASFLG--FGNIAGLSKEFAYIFL--IIAVVLFVIG 45 
                 788995569*******..5555567788866665..4444444443 PP

>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.8    0.0014       2.3      14      50 ..       9      48 ..       4      49 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0014
     DUF2892 14 ivvGlvllllallglsggw......gwllglvGavllltgltg 50
                +++++++ +l++ ++   +      +++++++++vl++ g++g
  EGE27693.1  9 AIIAIIASFLGFGNI---AglskefAYIFLIIAVVLFVIGFVG 48
                344444444444444...3334777****************98 PP

>> Bacteriocin_IId  Bacteriocin class IId cyclical uberolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.1    0.0073        12      21      48 ..       4      36 ..       1      44 [. 0.72
   2 ?    3.2   0.5     0.063     1e+02      21      36 ..      30      45 ..      26      49 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0073
  Bacteriocin_IId 21 gstvasiisiitailsaGailaigasa.....v 48
                     ++ +++ii+ii ++l+ G i+  +        +
       EGE27693.1  4 WAIIFAIIAIIASFLGFGNIAGLSKEFayiflI 36
                     899****************88775443322333 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.063
  Bacteriocin_IId 21 gstvasiisiitails 36
                     +++++ ii+++  +++
       EGE27693.1 30 FAYIFLIIAVVLFVIG 45
                     6899999999988886 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   9.6    0.0015       2.4     386     429 ..       4      47 ..       1      52 [] 0.47

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0015
     DUF2207 386 lglgliilglilillallllvlllvfllilllillliaiivlll 429
                 ++++++i+++i+++l+++ +++l+  +++++li++++++++ ++
  EGE27693.1   4 WAIIFAIIAIIASFLGFGNIAGLSKEFAYIFLIIAVVLFVIGFV 47 
                 44455555555555555544444555555555555554444443 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.4     0.004       6.5      19      61 ..       5      48 ..       2      52 .] 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.004
      DUF202 19 alialglallrffl.tgepsalgkilglilivlgiltllvglvr 61
                a+i++ +a++++fl  g+ + l+k +++i+++++++++++g+v 
  EGE27693.1  5 AIIFAIIAIIASFLgFGNIAGLSKEFAYIFLIIAVVLFVIGFVG 48
                5666667777777746666777899***************9986 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.9     0.006       9.7       9      67 ..       5      48 ..       1      50 [. 0.72

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.006
                 XXXXXXXXXXXXXXXXXXXXXXX.....................XXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  9 nllfwligivllavGvwlrlkhaeaalacllsesaedpailaillivvGvllfllgflG 67
                 +++f +i+i++ ++G              + +  ++++a++   ++++ v+lf++gf+G
   EGE27693.1  5 AIIFAIIAIIASFLG--F----------GNIAGLSKEFAYI---FLIIAVVLFVIGFVG 48
                 577888888877777..2..........2233457778888...999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1138  (0.0634726); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 379.54
//
Query:       EGE27694.1  [L=265]
Description: hypothetical protein EA1_01342 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-50  172.5  40.8    1.3e-50  172.3  40.8    1.0  1  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3  40.8   7.1e-55   1.3e-50       2     236 .]       7     260 ..       6     260 .. 0.92

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 7.1e-55
        TauE   2 llagllaGfvagllGiGggliavPlLll.ll........ppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsel 91 
                 ++ag++aG++agl+G+Ggg+++vP+L++ l          p+vav+t+l+++++ts+s++ ah++rg v+w +++ ++ g ++G+l+Ga++++l+++++
  EGE27694.1   7 AAAGIIAGLCAGLFGVGGGMVIVPALIWiLAaygmptdiVPHVAVGTALATIILTSISSMTAHHKRGGVRWEIFKNMSKGLVLGSLFGAWVATLISGAA 105
                 89*************************9552578999*****************************99******************************* PP

        TauE  92 lkllfgvlllllallmllrkkrsrakgrerrptaillvligglvGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyal.... 186
                 l++++g+  +l+a+ ml+ ++++r +   ++p a   +++g+++G+ls+++GiGgG+l+vp+l    g+p+++av+ts+++ l+i+laga+g+++    
  EGE27694.1 106 LQAILGAGAILVAIKMLFFPNQERLD--IPPPPAYKQGFAGVVIGILSAIFGIGGGSLTVPYLSQ-NGVPMRQAVGTSAACGLPIALAGAFGFIWfghq 201
                 ****************9977644554..888888889999999*******************984.8**************************777888 PP

        TauE 187 .........agavdwpllllllpgallGallGarlarrlsertlrrlfallllvlgvkl 236
                           g v++ +++ + + +++ a +Ga+la+ l+++tl+r+f++ll+++gv+l
  EGE27694.1 202 igtanidglIGFVHIGAFITISILSFIMAKVGAKLAHALPAQTLKRAFGVLLMIVGVRL 260
                 88667766666666666666************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1933.86
//
Query:       EGE27695.1  [L=297]
Description: biotin/lipoate A/B protein ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0006   19.7   0.0    0.00097   19.0   0.0    1.4  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
  ------ inclusion threshold ------
      0.019   14.9   0.1      0.035   14.0   0.1    1.4  1  BPL_C          Biotin protein ligase C terminal domain
      0.068   13.6   0.6        1.4    9.5   0.1    2.2  2  FucT_N         Alpha-(1,3)-fucosyltransferase FucT N-terminal


Domain annotation for each model (and alignments):
>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.6e-07   0.00097       7     126 ..      27     164 ..      22     174 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.6e-07
                    -HHHHHH..GCGGG--TT-..EEEEEEESS-B....-B--B-TTSEEEEEEEEESS...-CCGTHHHHHHHHHHHHHHH................H CS
  BPL_LplA_LipB   7 stntllkeslnsselesgg..lvvvrrqtgGr....nvwhspkgeltyslllspeqktfqnrvlelyvsllvlavlealg.....yrd.....skp 86 
                    stnt lk+ +   e+   +  l  ++ q+ Gr    + w+s +g + +sl + ++ +  q+  +  +  l++l v   l      + +     ++ 
     EGE27695.1  27 STNTELKNTVIRGEKSHSLlhLMTADHQSLGRgqhgRSWVSSQGAVFLSLYVPMQSQ-TQDFGINQLSGLISLLVGFYLIkmpiiT-QmnqirQTM 120
                    777744444444444444401445778999**********************98863.3334444442233332222222233331.144333666 PP

                    HTT-TTEEEETTTEEEE......TTEEEEEEEEEEEETTS-EEEEE CS
  BPL_LplA_LipB  87 giegipvfikwpnDlyv......ngrKlaGiavtstrgktlhhivi 126
                    + ++i v+  w nDl v         KlaG++++ +  ++  h ++
     EGE27695.1 121 NLPKIGVK--WANDLGVfdedsqRFWKLAGVLIEPIFVAKNDHRSL 164
                    66666666..*********9977777*******9998666555543 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   5.9e-06     0.035      15      43 ..     264     291 ..     249     294 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.9e-06
                 EEEEEEEE-TTSEEEEEETTE.EEEESSC CS
       BPL_C  15 veGiavGIdddGaLllktddglqpdinsG 43 
                 + G+  G+d++GaLl++ + g +++i +G
  EGE27695.1 264 LSGKCLGVDERGALLVQNEQG-IQTIFAG 291
                 589999***************.*999776 PP

>> FucT_N  Alpha-(1,3)-fucosyltransferase FucT N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.048   2.8e+02       3      28 ..       8      33 ..       7      41 .. 0.89
   2 ?    9.5   0.1   0.00023       1.4      10      56 ..     209     255 ..     204     263 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.048
      FucT_N  3 fvdfwdefdlsnellveilsqrfkle 28
                f + w+++++++e  ++ils++ +l+
  EGE27695.1  8 FDQLWQTIQNHHEHHASILSTNTELK 33
                7789****************999986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00023
      FucT_N  10 fdlsnellveilsqrfklelsdspdlllysvfgeealkyekcvkiff 56 
                 ++ + +++++ + ++++l  s+++ + ++  f++ +l  ++ v+if 
  EGE27695.1 209 YQPICQAICRAIFHHHQLMTSQKTATGFINQFNQMHLLTDRQVEIFT 255
                 56778899*******************************99****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2334.35
//
Query:       EGE27696.1  [L=235]
Description: pantothenate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-36  126.7   0.0    1.2e-36  126.5   0.0    1.0  1  Pan_kinase  Type III pantothenate kinase
  ------ inclusion threshold ------
      0.058   13.1   0.0      0.094   12.4   0.0    1.3  1  NodA        Nodulation protein A (NodA)


Domain annotation for each model (and alignments):
>> Pan_kinase  Type III pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.0   1.3e-40   1.2e-36       2     205 ..       3     193 ..       2     196 .. 0.83

  Alignments for each domain:
  == domain 1  score: 126.5 bits;  conditional E-value: 1.3e-40
                 EEEEE-SSEEEEEEEETTCCEETEEE.EEEEEESC..HHHHHHHHHHCHCCCCEGCEEEEEEESSCHHHHHHHHHHHHHHSS-EEEES.CSSECTCEE- CS
  Pan_kinase   2 LliDiGNtrikwalfegeellaswri.astaasrt..adelaellesllkaagleieaviissVvpaavaalleallkyfkveplvvrssaaklgltng 97 
                 L++D GNtr+k+ l+      ++++i  s a+++    +el   l +++ +   e++ v issV +++++++++  lk ++v+  +++ ++ +  l  +
  EGE27696.1   3 LWLDLGNTRLKYWLI------NNGQIiLSDAKEHLkaPNELLLGLLGVFTQF--EPNFVGISSVLGEKINHAITKTLKELGVPFEFAKVNHRHPMLCSR 93 
                 89*************......5555544555555512444444444454444..4478************************99999955555555555 PP

                 SSSGGGS-HHHHHHHHHHHHHCTTSEEEEEEESSEEEEEEEETTSEEEEEEEEE-HHHHHHHHHHCSSS----HHCCHHSC.SSSBSSHHHHHHHHHHH CS
  Pan_kinase  98 ydnpkelGaDRwvaavaarellpgkpllvvdfGTAttfdavsadgeylGGlIaPGlalmleaLaektakLprvelakpaeaesvigknTveaiqsGily 196
                 y +p++lG+DRw+++++a++   g + +vv +GTA+t+d++ ++ge+lGG+I+P + ++++aL+ +t ++  v++ + ++    +g++T +a+++G+l+
  EGE27696.1  94 Y-EPSQLGVDRWLQMLGAVN---GHKQCVVGCGTALTIDMI-DEGEHLGGYILPNVYMQRHALYAGTQQID-VKQGRFDG--LSLGTTTDDAVNHGVLF 184
                 5.8*****************...44789*************.5678*************************.88888866..***************** PP

                 HHHHHHHHH CS
  Pan_kinase 197 glagliegi 205
                 g++g++  +
  EGE27696.1 185 GVVGAVASV 193
                 *****9875 PP

>> NodA  Nodulation protein A (NodA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     1e-05     0.094      93     134 ..      49      93 ..      31     103 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1e-05
        NodA  93 rpdleglg..ighsie.vllpvlkelgvPfafgtvrkalrkhver 134
                  p++ g+   +g++i+ +++ +lkelgvPf f  v +      +r
  EGE27696.1  49 EPNFVGISsvLGEKINhAITKTLKELGVPFEFAKVNHRHPMLCSR 93 
                 455544322266775427899************998876555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2015.34
//
Query:       EGE27697.1  [L=140]
Description: membrane protein-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-18   67.1   6.5    1.7e-18   66.8   6.5    1.0  1  MAPEG     MAPEG family


Domain annotation for each model (and alignments):
>> MAPEG  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   6.5   9.3e-23   1.7e-18       2     128 ..      14     135 ..      13     136 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 9.3e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHTT--SS---S.......SH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.T-HHHHHHHHHHHHHHHHHHHH CS
       MAPEG   2 alyagllallllllslivvkerrkakiaigegkana.pralddklppklqrairahgNflEyvplfllavllaeltgaetglaallaaafvvaRvlhal 99 
                 +++++++a+ll +++++++k+  +++i     k+n+ pr+  +++++ ++r+++a+ N++E +p+fl+ vl+a  t ++ +++++la  +++ R+ ++ 
  EGE27697.1  14 TIILMVIACLLPFVCAALAKYLGGYNI-----KDNQtPREFLANTHGAAARLNHAQTNSFESLPIFLASVLIALYTFVPVSIINILATGYLIFRICFIM 107
                 57788999999**************99.....444459************************************************************* PP

                 HHHH-..SGGGHHHHHHHHHHHHHHHHHH CS
       MAPEG 100 gyiaggpppgRslgflltllvllvlslla 128
                  y+++  +++Rs+ ++++l ++++l++la
  EGE27697.1 108 SYATN-LSILRSVTWMFSLSCCIMLFILA 135
                 ****9.********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1171.02
//
Query:       EGE27698.1  [L=137]
Description: OsmC-like protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-19   68.0   0.0    9.4e-19   67.8   0.0    1.1  1  OsmC      OsmC-like protein
  ------ inclusion threshold ------
      0.037   13.9   0.0      0.077   12.9   0.0    1.5  2  PEGA      PEGA domain


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0     1e-22   9.4e-19       4      99 ..      33     130 ..      29     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 1e-22
                 S.SB-HHHHHHHHHHHHHHHHHHHHTCCCT---SCEEEEEEEEEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHH.HHHSHHHHHH.CT-SSSEE CS
        OsmC   4 s.gpsPeelllaalasCfaitlravakkkgikledleveveaerdpegakgiteirlkvevkipgadseeklkklleka.ekrCpvsntl.kngvkvel 99 
                 + g sP+el+l +l++C++ ++ +++kk + +++d+++ ++a+r+++ + ++t+i+l++ v+ +++ +e +l+k++e++ ek+C+ s++l   gv++++
  EGE27698.1  33 TaGASPMELILLGLGGCASYDVVTIMKKSRQDITDVRCQMHAHRADTIPAVFTDIHLHFVVT-GSDIKESQLAKAIELSaEKYCSASRMLsSGGVNITH 130
                 2499*************************************9888765558**********5.556669*********99**********999999986 PP

>> PEGA  PEGA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.6e-06     0.077       5      30 ..      16      42 ..      13      48 .. 0.84
   2 ?   -3.9   0.0       1.5   1.4e+04      38      46 ..     107     115 ..     104     120 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.6e-06
        PEGA  5 tirSnpeGatVyidGkyl.GkTPvtls 30
                +i ++p+G t+ +dG+++ G +P++l 
  EGE27698.1 16 FIGTSPSGHTIHLDGNKTaGASPMELI 42
                699************987479999987 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.5
        PEGA  38 lrvekeGYe 46 
                 +++++e Y 
  EGE27698.1 107 IELSAEKYC 115
                 455666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1156.73
//
Query:       EGE27699.1  [L=48]
Description: hypothetical protein EA1_01367 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 434.05
//
Query:       EGE27700.1  [L=165]
Description: dinucleoside polyphosphate hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-23   82.3   0.1    3.6e-23   82.1   0.1    1.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.1     2e-27   3.6e-23       2     129 ..       7     145 ..       6     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 2e-27
                 EEEEEEEEEEETTSEEEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE.............EEEEEEE CS
       NUDIX   2 lrravgvvllnekgevLlvrrskkpfpgWelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd.............eheilyv 87 
                 +r++vg++l n +g++L+++r    +++W++P+G++  gEtp +A+ REl EE+Gl +e +++l+++++++ y+ p++              ++++l++
  EGE27700.1   7 FRPNVGIILVNAHGQLLWAKRI--GHDSWQFPQGGISHGETPLDAMYRELYEEVGLHPEHVKVLAVTRDWLRYRLPKRYlrtgqeplcigqkQKWFLLY 103
                 699*******************..6666************************************************999************99999988 PP

                 EEEEECSGCSST.STTTEEEEEEEEHHHHHHHHTHCTHHHHHH CS
       NUDIX  88 fleevegelepn.denevsevrwvpleellkeklaaesrkllp 129
                 + e+++  ++ +   +e+++++wv++    ++  ++++r++++
  EGE27700.1 104 LDEANTKYIRFDvGVPEFDDWQWVSYWFP-LTGVVPFKRNVYQ 145
                 88777777777789********9998755.6666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1228.43
//
Query:       EGE27701.1  [L=589]
Description: condensin subunit Smc, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-32  111.9   9.3    2.9e-31  108.6   9.0    2.8  1  SMC_N     RecF/RecN/SMC N terminal domain
    1.7e-15   57.6   0.0    2.5e-14   53.8   0.0    2.2  1  AAA_15    AAA ATPase domain
    6.3e-15   56.2  41.1    2.1e-09   38.2  40.7    3.4  1  AAA_23    AAA domain
    6.1e-10   39.4   0.9    2.3e-09   37.5   0.0    2.1  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    7.6e-07   28.8   0.0    1.7e-06   27.7   0.0    1.6  1  AAA_29    P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.086   12.7   2.3       0.25   11.2   2.3    1.8  1  DUF2911   Protein of unknown function (DUF2911)
       0.15   12.4   0.0       0.15   12.4   0.0    2.5  2  AAA_19    AAA domain
          2    8.7   0.0          2    8.7   0.0    3.5  4  AAA_22    AAA domain
        2.2    8.6   0.0        2.2    8.6   0.0    3.3  1  AAA_16    AAA ATPase domain
        2.4    8.6  21.6    5.2e+02    1.1  18.3    3.6  2  ABC_tran  ABC transporter
        5.3    6.8  10.3        1.7    8.4   0.0    3.7  5  MukB      MukB N-terminal


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   9.0   1.8e-34   2.9e-31       2     133 ..       3     140 ..       2     481 .. 0.80

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 1.8e-34
                 EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEE......SSSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx......xxxx RF
       SMC_N   2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkk......lkie 93 
                 lk+l++ +Fks+a + ++  f + +taivGpNG+GKsn++dAi++vLGe+sak+lr   +sd+i++  + +a+ + a+ve++f++++++      +   
  EGE27701.1   3 LKSLKLAGFKSFA-NPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGAMSDVIFAgVEGRAAKSLASVELIFEHTQDEthgirhELNL 100
                 899*********8.99**************************************************8888999999*******7777765666654555 PP

                 SSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  94 keevsisrrvkrkgeseykingkevtkkevsellesagis 133
                  +e+s++r+v ++g+s+y+ing++v++++v +++  +g+ 
  EGE27701.1 101 YQELSLRRQVTKEGKSDYFINGQRVRRRDVVDVFLGTGLG 140
                 788***************************9998777765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   1.5e-17   2.5e-14       1     261 [.       1     364 [.       1     528 [. 0.71

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 1.5e-17
      AAA_15   1 MkIkkikikNFRslkd.veidlseeltvliGkNnsGKSsilealdlFlnnkekkn..................kkvikiekedleifeniseskdikId 80 
                 M++k++k+  F+s+ + ++  +  ++t ++G+N++GKS++++a+ + l +++ k+                   k +   +  +e+++++ + ++ +++
  EGE27701.1   1 MRLKSLKLAGFKSFANpTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQlrggamsdvifagvegraAKSLASVELIFEHTQDETHGIRHELN 99 
                 9************************************************998888****************9944455555555666666666666777 PP

      AAA_15  81 vef........................................................................aekekakeyektlkskekk.kadl 106
                 ++                                                                         +++  + e ek l +++++ k+  
  EGE27701.1 100 LYQelslrrqvtkegksdyfingqrvrrrdvvdvflgtglgarsyavieqgmigrivesspmqlrefieegagvsRYQARRAETEKKLGETQDNlKRLS 198
                 6667777777788999999999999******************************************99999888444222333333333333302222 PP

      AAA_15 107 .llkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkee..........elknvlksai 194
                  l  ++++++k++i++ + + + + l+de ++++k++ ++ l++   +++e++k e  +  e l kl  k ++   + +           lk   k+++
  EGE27701.1 199 dLQGELKKQHKTLIRQAQSAKQYQALNDELKTLQKEELIRRLFEA-WHHHEQKKIEQGKSGEVLAKLDAKANQVRRELDllsarvaeaqWLKDDAKDNY 296
                 033445556666777777776667777777777777776666644.55555667777777777777777444444444477777765552222222222 PP

      AAA_15 195 iklllisakRnvsdedsekkssllgklkekileealqekl....eeelteklkeiqeklkeidkklaeelk 261
                       +a+++++++++++ +s +++ +eki +  +q +     + + +++l +i+ +l+ i  k ++ + 
  EGE27701.1 297 HN--AQMAEQTAQHNFYTV-NSQITQNDEKIARLQAQHQEaltkINQAQDELLQINQSLDVITPKAEAMTH 364
                 22..333444444444433.333333333333332222112233444455555555555544444433333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2  40.7   1.3e-12   2.1e-09       1     176 [.       5     319 ..       5     484 .. 0.68

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.3e-12
      AAA_23   1 kLkienfrsfrd.qeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiese....gkvkayveltfenkdgry........ 86 
                 +Lk+ +f+sf + +++ F + +t+I+GpNG+GK+ ++dAi+++L++ +++  r  g+ +  sdv ++      +k  a+vel fe+++++         
  EGE27701.1   5 SLKLAGFKSFANpTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLR--GGAM--SDVIFAGVegraAKSLASVELIFEHTQDEThgirheln 99 
                 699*******66377******************************98765555..3334..444433334456888999*******9998788888888 PP

      AAA_23  87 ................................................................trsiererelskkkgkttkkaklelleideleqfi 121
                                                                                  ++ie+   +s+ ++++   +k+ + + d+l +++
  EGE27701.1 100 lyqelslrrqvtkegksdyfingqrvrrrdvvdvflgtglgarsyavieqgmigrivesspmqlREFIEEGAGVSRYQARRAETEKKLGETQDNL-KRL 197
                 88888888888888888777777777777777777777777777777777777777777766665555555555555544444444444333433.444 PP

      AAA_23 122 sellgskkiilnlilflgqerfeefelkdkke.........................................................rleelekele 163
                 s+l g  k++ + ++ ++q+ +++++l+d+++                                                                   
  EGE27701.1 198 SDLQGELKKQHKTLIRQAQSAKQYQALNDELKtlqkeelirrlfeawhhheqkkieqgksgevlakldakanqvrreldllsarvaeaqW--------- 287
                 444455555555555555555555555444444445555566666666666666666666666665555333333333333333333330......... PP

      AAA_23 164 eledekkllekl..............................e 176
                            l                              +
  EGE27701.1 288 -----------LkddakdnyhnaqmaeqtaqhnfytvnsqitQ 319
                 ...........24444444444444444444444444433330 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.4e-12   2.3e-09       1     100 [.      26     121 ..      26     139 .. 0.87
   2 ?   -0.7   0.7       0.6   9.8e+02     101     212 ..     232     347 ..     212     440 .. 0.59

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.4e-12
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv.eeklssvetllesgl 98 
                 +++++GpNg+GKSn++da++++ +     e +   l+gg + ++i     +++ ++ +  e+++ ++q+  +  +++l+  q  + + ++ ++++++++
  EGE27701.1  26 ITAIVGPNGCGKSNVIDAIRWVLG-----ETSAKQLRGGAMSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQElSLRRQVTKEGKSDYF 119
                 79*******************976.....78888888888*******************************************8888888777777777 PP

      AAA_21  99 ll 100
                 + 
  EGE27701.1 120 IN 121
                 65 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.6
      AAA_21 101 dkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrke....rigllnifadyfgfakekrllqrlvrslklv 195
                 +k+ l+++ +  + + +++++++++s   l + ++ ++q  + l+++++r +++ +l+d+  ++    +++ + ++ ++++ ++ +++ ++ + +l+ +
  EGE27701.1 232 QKEELIRRLFEAWHHHEQKKIEQGKSGEVLAKLDAKANQVRRELDLLSARVAEAQWLKDDAKDNyhnaQMAEQTAQHNFYTVNSQITQNDEKIARLQAQ 330
                 555566666666666666666666666666666666666666666666666666666655555554444444444444444444444444444444444 PP

      AAA_21 196 eielsdlgegeeliasv 212
                 + e+ +   + ++  + 
  EGE27701.1 331 HQEALTKINQAQDELLQ 347
                 43333333333333333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0     1e-09   1.7e-06       1      46 [.       3      48 ..       3      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1e-09
      AAA_29  1 LkrlqlvNWgtfdg.htieidlkgatlltGpsGsGKSTllDAiqalL 46
                Lk+l+l+   +f + +t++++ +++t ++Gp+G GKS ++DAi  +L
  EGE27701.1  3 LKSLKLAGFKSFANpTTFTFR-HDITAIVGPNGCGKSNVIDAIRWVL 48
                78899999999***99****8.669******************9998 PP

>> DUF2911  Protein of unknown function (DUF2911)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.3   0.00015      0.25      66     140 ..     309     384 ..     294     388 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
     DUF2911  66 GkYslft.ipgekewtvilnketkqwgateydekkdvlrvkvkveklaesvEtltiefedtkansaklelsWektk 140
                   Y++ + i +++e    l+ ++++  ++ +++++++l+++ +    + ++E++t e++++k+++ +++l+W++++
  EGE27701.1 309 NFYTVNSqITQNDEKIARLQAQHQEALTKINQAQDELLQINQSLDVITPKAEAMTHEITHAKQAQSEVQLTWQSHR 384
                 557777734444555556777777777777777999************************************9875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.3e-05      0.15       8     126 ..      22     245 ..      17     253 .. 0.65
   2 ?   -3.4   3.6       6.9   1.1e+04      84      84 ..     426     426 ..     299     508 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.3e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelggvkp.....eeillvaftgrAakelrerlaalgaeatTiHrlal........................ 77 
                 +++++ +++++ G+GK+ v+ +i  +l e+   ++      +++ + + grAak l+     +++  +  H++                          
  EGE27701.1  22 FRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLrggamSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHelnlyqelslrrqvtkegksdyfi 120
                 6788999**************999888888776667787799**************9865455555444555433445577777777777777777777 PP

      AAA_19  78 .............................................................................ldfddlltealelleeaeeekk 99 
                                                                                               d++++l+++ + l +   + +
  EGE27701.1 121 ngqrvrrrdvvdvflgtglgarsyavieqgmigrivesspmqlrefieegagvsryqarraetekklgetqdnlkrlSDLQGELKKQHKTLIR---QAQ 216
                 777777777777777777777777777777777777777777777777777777777777666666665655544443333333333333221...122 PP

      AAA_19 100 lqeeellivDEfqdvd..elqyrLlkall 126
                   +++  + DE   ++  el+ rL++a+ 
  EGE27701.1 217 SAKQYQALNDELKTLQkeELIRRLFEAWH 245
                 22444555666666665555566666655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.9
      AAA_19  84 l 84 
                 +
  EGE27701.1 426 I 426
                 0 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0012         2       5      43 ..      24      65 ..      21     119 .. 0.60
   2 ?    0.6   0.3       0.4   6.5e+02      70      89 ..     210     247 ..     162     255 .. 0.68
   3 ?   -1.5   1.4       1.8   2.9e+03      98     117 ..     385     405 ..     293     416 .. 0.64
   4 ?   -2.6   0.1       3.7     6e+03     106     110 ..     462     466 ..     424     499 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0012
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee....erpevv 43
                + i++++G+ G+GK+ ++  ++  l e  +a++    + ++v+
  EGE27701.1 24 HDITAIVGPNGCGKSNVIDAIRWVLGET-SAKQlrggAMSDVI 65
                5689***********9998776555332.23334556444444 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.4
      AAA_22  70 a..................erlsseellealeqalrar 89 
                 +                  ++l++eel+++l +a++++
  EGE27701.1 210 TlirqaqsakqyqalndelKTLQKEELIRRLFEAWHHH 247
                 34444444444455555666688888887777777776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.8
      AAA_22  98 DEaqhlr.seealeeLrslln 117
                 DE   l+ ++++le+L++l+ 
  EGE27701.1 385 DELSSLMqEKNNLENLKKLAQ 405
                 677776655888888887776 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 3.7
      AAA_22 106 eeale 110
                 +e+l+
  EGE27701.1 462 DEMLK 466
                 22222 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0014       2.2      25      50 ..      25      50 ..      15     111 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0014
      AAA_16 25 elvllsGesGvGKsslvrellralek 50
                 ++ ++G+ G+GKs ++++++  l +
  EGE27701.1 25 DITAIVGPNGCGKSNVIDAIRWVLGE 50
                57889************999854444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1  18.3      0.32   5.2e+02      12      40 ..      25      53 ..      16     422 .. 0.88
   2 ?   -1.8   0.1       2.5   4.1e+03      57     102 ..     452     469 ..     422     513 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.32
                SEEEEEESTTSSHHHHHHHHTTSS--SEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagllkpteG 40
                 ++aivG+nG+GKS ++ ++   l  t+ 
  EGE27701.1 25 DITAIVGPNGCGKSNVIDAIRWVLGETSA 53
                689***************99766655554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.5
                 CCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGGTTCBGE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  57 lrkeigvlpqepqlfpeltvrenesdeeiekalsklglkelkdtvv 102
                 lr                            + l++l+++e+ ++ v
  EGE27701.1 452 LR----------------------------QKLEHLNDDEMLKSLV 469
                 22............................2333333333333222 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0     0.001       1.7       6      48 ..       3      46 ..       1      57 [. 0.83
   2 ?   -2.8   0.0       2.7   4.4e+03     196     220 ..     143     167 ..     141     173 .. 0.86
   3 ?    2.7   0.2     0.056        92     137     176 ..     185     224 ..     171     234 .. 0.88
   4 ?   -2.2   0.1       1.8   2.9e+03     138     161 ..     379     402 ..     315     436 .. 0.53
   5 ?   -1.1   0.4      0.82   1.3e+03      89     147 ..     436     494 ..     432     508 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
                EEEEEEEEETTEEE.EEE-HHHHHHHHHS--SHHHHHHHHHHHH CS
        MukB  6 fksltlinWnGffa.rtfdldelvttlsGgnGaGksttmaafvt 48
                +ksl l  ++ f    tf + + +t++ G nG Gks ++ a+  
  EGE27701.1  3 LKSLKLAGFKSFANpTTFTFRHDITAIVGPNGCGKSNVIDAIRW 46
                678888888887653689*******************9988755 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.7
                 HHHHHHHHHSSS-HHHHHHHHHHHB CS
        MukB 196 fyrlieaslyGGissaitrslrdyl 220
                  y +ie  + G i ++   +lr+++
  EGE27701.1 143 SYAVIEQGMIGRIVESSPMQLREFI 167
                 58999999*****999999999996 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.056
                 E--SSS--EE--HHHHHHHHHTSTT-EEEE-S-HHHHHHH CS
        MukB 137 eklddkkarvrelnelkekleelegvrlkkfnsvtdyhal 176
                 +kl+++++++++l++l+ +l+++++  +++ +s+++y al
  EGE27701.1 185 KKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQAL 224
                 689999*******************************886 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.8
                 --SSS--EE--HHHHHHHHHTSTT CS
        MukB 138 klddkkarvrelnelkekleeleg 161
                 + + +++++ +l + k++le+l++
  EGE27701.1 379 TWQSHRDELSSLMQEKNNLENLKK 402
                 222233444444444444444433 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.82
                 EEEE-TTS-EEEEEEEEEE-SSTTT-EEEEEEEEES--TT--HHHHHEE--SSS--EE- CS
        MukB  89 levvnsreqrllvgvrleqvagrdkkvdikpfalqgleedvkltdvlleklddkkarvr 147
                 +ev+n      l +v l+q  +  +  ++   ++ +l + v+  ++ ++++++++a ++
  EGE27701.1 436 IEVQNQLSADTLKAVALRQKLEHLNDDEMLKSLVDELTQAVQTSQIHVQSQEKRHASLM 494
                 66666666777788888888888888888888999999999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2540  (0.14167); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.00u 0.35s 00:00:01.35 Elapsed: 00:00:00.52
# Mc/sec: 3432.74
//
Query:       EGE27702.1  [L=143]
Description: translation elongation factor Tu, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-35  120.2   0.0    6.9e-35  119.7   0.0    1.2  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    2.4e-08   34.2   0.1    1.4e-07   31.8   0.1    2.0  2  GTP_EFTU_D2  Elongation factor Tu domain 2


Domain annotation for each model (and alignments):
>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   7.7e-39   6.9e-35       1     111 [.      47     141 ..      47     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 7.7e-39
                  --EEECCEEEEEEESSS.....SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEE CS
  GTP_EFTU_D3   1 sikphtkfeAqvyileke...rhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFa 95 
                  si+phtkf+A+vy+l+ke   rhtp+ +gYrp++y+rt+dvtg  ++L       +e++     e+v+pGdnv+++veli+pia++kg       rFa
   EGE27702.1  47 SITPHTKFDAEVYVLSKEeggRHTPFLNGYRPQFYFRTTDVTG-AITL-------QEGT-----EMVMPGDNVEMSVELIHPIAMDKGL------RFA 125
                  699****************************************.9999.......7778.....9************************......*** PP

                  EECTTCEEEEEEEEEE CS
  GTP_EFTU_D3  96 iReggrTvaaGvvtei 111
                  iReggrTv+aGvv ++
   EGE27702.1 126 IREGGRTVGAGVVANV 141
                  *************998 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   1.5e-11   1.4e-07      33      74 .]       3      43 ..       1      43 [. 0.96
   2 ?    0.6   0.0     0.088   7.9e+02      40      54 ..      92     106 ..      55     139 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.5e-11
                 EEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2 33 trissletfhededeavaganaGvivaikgledaiivGdtlt 74
                 t+ +++e+f++ +de +ag+n+G+++++ + e+ +++G++l+
   EGE27702.1  3 TTCTGVEMFRKLLDEGRAGENCGILLRGTKREE-VQRGQVLA 43
                 899******************************.******95 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.088
                  EETEEESEEETTSEE CS
  GTP_EFTU_D2  40 tfhededeavagana 54 
                  t +e  + +++g+n+
   EGE27702.1  92 TLQEGTEMVMPGDNV 106
                  444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1066.98
//
Query:       EGE27703.1  [L=316]
Description: thioredoxin reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-51  174.8   3.9    2.5e-51  174.6   3.9    1.0  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    8.9e-22   77.7   2.3    1.5e-18   67.2   0.1    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.7e-19   70.1   2.9    6.4e-19   68.3   1.1    2.3  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    2.8e-06   26.7   7.8     0.0033   16.6   0.3    3.4  3  FAD_binding_2  FAD binding domain
    9.2e-05   21.7   6.7      0.071   12.2   0.3    3.9  4  GIDA           Glucose inhibited division protein A
     0.0002   20.9   2.9     0.0016   17.8   0.2    2.3  2  FAD_oxidored   FAD dependent oxidoreductase
     0.0014   17.4   3.7        1.2    7.7   0.1    3.9  4  HI0933_like    HI0933-like protein
     0.0034   17.0   4.2        4.9    6.6   0.0    3.5  4  DAO            FAD dependent oxidoreductase
     0.0039   17.4   0.6       0.02   15.1   0.1    2.3  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0098   15.2   1.7       0.27   10.4   0.1    2.8  3  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.019   14.1   0.2       0.21   10.7   0.0    2.4  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      0.021   15.2   0.1      0.078   13.4   0.0    1.9  2  NAD_binding_7  Putative NAD(P)-binding
      0.034   14.2   0.1        0.3   11.1   0.0    2.5  3  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
       0.12   10.7   0.0       0.19   10.1   0.0    1.3  1  FMO-like       Flavin-binding monooxygenase-like


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   3.9     2e-54   2.5e-51       2     292 ..       6     298 ..       5     300 .. 0.89

  Alignments for each domain:
  == domain 1  score: 174.6 bits;  conditional E-value: 2e-54
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.........evvkklnqgielllgeevvkidpgkkkvklekk 90 
                  +++++G+GpAG++aa ++a+a+++ +++  +g  ++g+   ++++ ++++da+ ++          + +  + g +l+++ +++++d  ++ ++l   
   EGE27703.1   6 RLIILGSGPAGYSAAVYAARANLNPVII--TGLQVGGQLTTTTEVDNWPGDAHGLTgnglmermkSHAE--RFGTKLIYD-SITQVDLHNRPFTL--- 95 
                  789*************************..9999*********************9**99977654433..344556666.89************... PP

                  ECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  91 kegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaa 188
                  + gd+  +++d+l++AtG+++  lg++ +++  g++v+++++++++ +k+++  ++vvGgG+++vE A +l+++++evtl+++rd+l    +k l+++
   EGE27703.1  96 V-GDKGVYTCDALIIATGATAQYLGLESEQKFMGQGVSACATCDGFFYKNQK--VAVVGGGNTAVEEALYLSNIASEVTLIHRRDTLR--AEKILQDQ 188
                  4.67779*******************************************98..*********************************8..99****** PP

                  HHHHHHHTTEEEEESCEEEEEEETTEEEE......EEETTSCE..EEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS.....BESSTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxx RF
  Pyr_redox_2 189 leealekeGvevklgtsvkeidgngekle......vvledgee..idadlvvvavGvrpstelleeklglelderggivvdefl.....rtnvpgiya 273
                  l e++++ ++++ +++++ke+ g++  ++      +++++     +d   ++va+G +p+t+l+  + +l++ ++g+ivv++ l     +tn+ g++a
   EGE27703.1 189 LFEKVKDGNIKIEWNHQIKEVVGDDMGVTgvmiesTQDGS--IkqLDIMGLFVAIGHKPNTKLF--DGQLNM-QDGYIVVNSGLngnatATNINGVFA 281
                  **************************55553232444444..266******************6..999***.***********9988889******* PP

                  -GGGCTECCSS--HHHHHH CS
                  xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 274 iGDvaggkggpelaqaAvq 292
                  +GDva  ++++++a ++  
   EGE27703.1 282 AGDVA--DHTYRQAITSAG 298
                  *****..888888877665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.2   0.00015      0.19       1      32 [.       8      38 ..       8      59 .. 0.84
   2 !   67.2   0.1   1.1e-21   1.5e-18     101     305 .]      80     283 ..      42     283 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgni 32
                 iI G GPaG +aa+ + +a+l+  +i+   ++
   EGE27703.1  8 IILGSGPAGYSAAVYAARANLN-PVIITGLQV 38
                 8********************6.567755555 PP

  == domain 2  score: 67.2 bits;  conditional E-value: 1.1e-21
  Pyr_redox_3 101 feeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvk..efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtr 195
                  + ++++v+ +++ f++  +k++y+++ +iiAtG     ++l+ + e+k   +  s     +   y++qkv+V+Gg+n+av+ Al l +  +eVt+++r
   EGE27703.1  80 YDSITQVDLHNRPFTLVGDKGVYTCDALIIATGA--TAQYLGLESEQKfMGQGVSACAtcDGFFYKNQKVAVVGGGNTAVEEALYLSNIASEVTLIHR 175
                  56899****************************9..888999999987533333333301333688******************************** PP

  Pyr_redox_3 196 gseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeey...kvk.tedgkkvev..kddvvlatGykpdlsflkkslfeldedgrp 287
                  ++++++e+         + +++l e vk ++ik++ n+++ke+  ++  +    ++ t+dg ++++      ++a+G kp++++++  +++  +dg++
   EGE27703.1 176 RDTLRAEK---------ILQDQLFEKVKDGNIKIEWNHQIKEVVGDDMGVtgvMIEsTQDG-SIKQldIMGLFVAIGHKPNTKLFD-GQLNM-QDGYI 261
                  *9888874.........67778888888899************988766522145534444.5555333456788**********9.66665.89999 PP

  Pyr_redox_3 288 vlte....eteetnvpglflaG 305
                  v+++    +   tn++g+f aG
   EGE27703.1 262 VVNSglngNATATNINGVFAAG 283
                  887655558899*******999 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.53   6.8e+02       1      23 [.       6      28 ..       6      37 .. 0.81
   2 !   68.3   1.1     5e-22   6.4e-19       1      79 [.     146     222 ..     146     227 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.53
                EEEEECSSHHHHHHHHHHHHTTS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgk 23
                +++++G+G  g  +A ++a+ + 
  EGE27703.1  6 RLIILGSGPAGYSAAVYAARANL 28
                689**********9999988765 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 5e-22
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT....TEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn....gievllntkveeiegsedgvesvklk 79 
                 kv+vvGgG++++E+A +l++++++Vt+++r+d+l+      a+kilq++l ++    +i++ +n++++e++g++ gv++v ++
  EGE27703.1 146 KVAVVGGGNTAVEEALYLSNIASEVTLIHRRDTLR------AEKILQDQLFEKvkdgNIKIEWNHQIKEVVGDDMGVTGVMIE 222
                 79*********************************......9999999998888888**********************9887 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   2.6e-06    0.0033       2      37 ..       7      41 ..       6      46 .. 0.88
   2 !    5.8   0.0    0.0048       6.2     135     190 ..     177     232 ..     147     243 .. 0.84
   3 !    7.2   0.7    0.0018       2.3     363     415 ..     247     299 ..     234     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.6e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   +i+ GsG AG++AA+ aa+a+l+ ++++  q+ gg+
     EGE27703.1  7 LIILGSGPAGYSAAVYAARANLNPVIITGLQV-GGQ 41
                   69********************9999999997.665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0048
                    ....HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEE CS
  FAD_binding_2 135 etlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevri 190
                    +tl   + l   l+e++++ ++++  +++++e++ +d +vtG+++e  ++g++ ++
     EGE27703.1 177 DTLRAEKILQDQLFEKVKDGNIKIEWNHQIKEVVGDDMGVTGVMIESTQDGSIKQL 232
                    566666667778999**9999**************999********9999888765 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0018
                    ..EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTH CS
  FAD_binding_2 363 vkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGn 415
                    +k++ +q+ ++ G  +  +g   +a+ ++i+G +AaG va   +  a   +G+
     EGE27703.1 247 TKLFDGQLNMQDGYIVVNSGLNGNATATNINGVFAAGDVADHTYRQAITSAGT 299
                    4888888889999766666666699***************8777776666665 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.3   5.5e-05     0.071       2      29 ..       7      34 ..       6      66 .. 0.82
   2 ?    0.4   0.0      0.21   2.7e+02     135     154 ..      98     114 ..      75     136 .. 0.70
   3 !    6.5   0.0     0.003       3.9       1      35 [.     146     179 ..     146     209 .. 0.87
   4 ?    3.4   0.4     0.027        34     349     389 ..     270     312 ..     255     315 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLit 29
                +i++G G AG+ AA+ aar++++ ++it
  EGE27703.1  7 LIILGSGPAGYSAAVYAARANLNPVIIT 34
                699******************9988873 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.21
                 TS-EEEECEEEE--TT-BT- CS
        GIDA 135 dgetikakavviatGtflkg 154
                 d+ +++++a +iatG+    
  EGE27703.1  98 DKGVYTCDALIIATGA---T 114
                 5668999********9...2 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.003
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGT CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldti 35 
                 +v V+GgG   +e Al +++   +v+Li h+ dt+
  EGE27703.1 146 KVAVVGGGNTAVEEALYLSNIASEVTLI-HRRDTL 179
                 699*************************.444443 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.027
                 TSBBSSSBTEEE-CGGGTB-SHHHH...HHHHHHHHHHHHHHHC CS
        GIDA 349 tLetkkvkgLflAGqinGteGYeEa...aaqGllAGinaarkak 389
                 +    +++g+f+AG++   + Y  a   a++G++A++ a ++++
  EGE27703.1 270 NATATNINGVFAAGDVADHT-YRQAitsAGTGCMAALDAEKYLD 312
                 5566779**********999.876522266*******9998775 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   1.3e-06    0.0016       3      41 ..       8      45 ..       7      85 .. 0.84
   2 ?    3.1   0.3     0.037        48      85     130 ..     177     227 ..     128     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.3e-06
  FAD_oxidored  3 vVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsg 41
                  ++ G+gpaG+ AA+ Aara  + +++     +GG+lt  
    EGE27703.1  8 IILGSGPAGYSAAVYAARANLNPVIIT-GLQVGGQLTTT 45
                  89*********************9996.56689999965 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.037
  FAD_oxidored  85 epevakavleeml....aeagvtvllntrlvevekegkriesvtveske.g 130
                   +   a+++l++ l    ++ ++++  n++++ev+ ++  +++v +es + g
    EGE27703.1 177 DTLRAEKILQDQLfekvKDGNIKIEWNHQIKEVVGDDMGVTGVMIESTQdG 227
                   555677777777777777889*************99999****99987755 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1   0.00097       1.2       2      29 ..       6      33 ..       5      44 .. 0.85
   2 ?    2.8   0.0      0.03        38     132     165 ..      83     114 ..      61     123 .. 0.70
   3 ?    0.4   0.1      0.16     2e+02       2      35 ..     146     179 ..     145     185 .. 0.85
   4 !    4.8   0.1    0.0073       9.4     107     151 ..     180     225 ..     176     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00097
                 SEEEE--SHHHHHHHHHHHHTT--EEEE CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlll 29
                 ++i++G G+AG  aA+ aa+++ + +++
   EGE27703.1  6 RLIILGSGPAGYSAAVYAARANLNPVII 33
                 689***************9998876665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.03
                  EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 132 vksvekeedgkfrvktkseeeleadklvlAtGGl 165
                  +++v+ ++   f++   +++ +++d+l++AtG +
   EGE27703.1  83 ITQVDLHNRP-FTLVG-DKGVYTCDALIIATGAT 114
                  5555443333.55555.8999**********986 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.16
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35 
                  +v+v+GgG   +  A+ +++  ++V+l+ + ++l
   EGE27703.1 146 KVAVVGGGNTAVEEALYLSNIASEVTLIHRRDTL 179
                  79************************99887665 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0073
                  -CHHHH.HHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTE CS
  HI0933_like 107 kaediv.dallkelkeagvklrletevksvekeedgkfrvktksee 151
                  +ae+i+ d l +++k+ ++k++ ++++k+v  ++ g+  v ++s++
   EGE27703.1 180 RAEKILqDQLFEKVKDGNIKIEWNHQIKEVVGDDMGVTGVMIESTQ 225
                  67888735899*******************9999999888885444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.7     0.012        16       2      25 ..       7      33 ..       6      45 .. 0.85
   2 !    6.6   0.0    0.0039       4.9     148     207 ..      63     119 ..      52     136 .. 0.74
   3 ?    4.7   0.0     0.014        18       1      31 [.     146     178 ..     146     183 .. 0.84
   4 ?   -2.2   0.0       1.9   2.4e+03     152     205 ..     189     246 ..     185     281 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
                EEEECTSHHHHHHHHHHHHTT...EEE CS
         DAO  2 vviiGGGiiGlstAyeLarrg...Vtl 25
                ++i G+G +G s+A ++ar++   V++
  EGE27703.1  7 LIILGSGPAGYSAAVYAARANlnpVII 33
                68***************9986666544 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HH CS
         DAO 148 ltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.ll 207
                 l+  + + ae+ G ++++   +t ++ ++ +  ++  + + g   ++da+++a+Ga ++ l 
  EGE27703.1  63 LMERMKSHAERFGTKLIYD-SITQVDLHN-RPFTL--VGDkGVY-TCDALIIATGATAQyLG 119
                 677888999999******9.888887665.45666..2222654.57*********998543 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.014
                 EEEEECTSHHHHHHHHHHHHT.T.EEEEESSSS CS
         DAO   1 dvviiGGGiiGlstAyeLarr.g.Vtllekgdi 31 
                 +v+++GGG + +  A++L+     Vtl+ ++d 
  EGE27703.1 146 KVAVVGGGNTAVEEALYLSNIaSeVTLIHRRDT 178
                 59****************753258*****9975 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.9
                 HHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECT.EEEEEEEE..EEE--GGGHH CS
         DAO 152 laraaealGveilegtevtgleeedgkvwgve.rttp.gendaada..vVnaaGawsd 205
                 l ++++++ ++i  +++++++  +d +v+gv  + t+ g++++ d   + +a G+  +
  EGE27703.1 189 LFEKVKDGNIKIEWNHQIKEVVGDDMGVTGVMiESTQdGSIKQLDImgLFVAIGHKPN 246
                 5666777777777787877775556667777776666676433333566666666544 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.5e-05      0.02       1      43 [.       9      54 ..       9      74 .. 0.83
   2 ?   -0.4   0.0       1.1   1.4e+03       1      29 [.     149     177 ..     149     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE....TTC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev....pgv 43
                   I+G+G +G +aA ++a+a+++ +++ ++ ++GG++++ +     pg 
     EGE27703.1  9 ILGSGPAGYSAAVYAARANLNPVII-TGLQVGGQLTTTTEvdnwPGD 54
                   89***********************.999******998655444444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    +vG+G ++   A +L++   +v+l+ +rd
     EGE27703.1 149 VVGGGNTAVEEALYLSNIASEVTLIHRRD 177
                    89**9999999999998888899888777 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00021      0.27      20      48 ..       7      34 ..       3      45 .. 0.82
   2 ?    1.9   0.0     0.086   1.1e+02      15      56 ..     142     182 ..     134     194 .. 0.76
   3 ?    0.7   0.0      0.21   2.6e+02     103     140 ..     189     224 ..     175     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
                EEEE--SHHHHHHHHHHHHCTTS-EEEEE CS
        Thi4 20 vvivGaGssGLtaayylakkpdlkvaile 48
                ++i G+G++G +aa y a++ +l+ +i+ 
  EGE27703.1  7 LIILGSGPAGYSAAVYAARA-NLNPVIIT 34
                79*****************9.99988874 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.086
                 HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4  15 yaesDvvivGaGssGLtaayylakkpdlkvailersvspGGG 56 
                 y ++ v++vG+G + +  a yl++    +v+++ r+ ++   
  EGE27703.1 142 YKNQKVAVVGGGNTAVEEALYLSNI-ASEVTLIHRRDTLRAE 182
                 67889*****************988.6777777776655555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.21
                 HHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEEH CS
        Thi4 103 llskvlqlanvkllnavaveDlivregegvaGvvinwt 140
                 l  kv +  n+k+     + +++  +  gv+Gv+i++t
  EGE27703.1 189 LFEKVKD-GNIKIEWNHQIKEVVGDD-MGVTGVMIEST 224
                 5666767.899999999999998777.*******9986 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.6   2.1e+03       2      23 ..       4      25 ..       3      31 .. 0.78
   2 ?   10.7   0.0   0.00017      0.21     143     229 ..      98     180 ..      71     186 .. 0.63
   3 ?   -0.0   0.0       0.3   3.8e+02     292     340 ..     195     243 ..     180     245 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.6
  K_oxygenase  2 ilDligiGiGpsnLsLaillee 23
                 ++ li+ G Gp+  s a+ ++ 
   EGE27703.1  4 HHRLIILGSGPAGYSAAVYAAR 25
                 6789999999999888887665 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00017
  K_oxygenase 143 eeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrseale 229
                  ++  +++ +l++++G +++   +  + +   + v  s  ++      +++++aVvG+G +a e +  l + +  +e++l+ r++ l+
   EGE27703.1  98 DKGVYTCDALIIATGATAQYLGLESEQKFMGQGV--SACATCDGFFYKNQKVAVVGGGNTAVEEALYLSNIA--SEVTLIHRRDTLR 180
                  5666667777777775554322222222111211..22222222257899***********99777766655..5999999998775 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.3
  K_oxygenase 292 eerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATGY 340
                  + ++++  n++++++  +  g + + ++ +++g+ ++l++  +++A G 
   EGE27703.1 195 DGNIKIEWNHQIKEVVGDDMGVTGVMIESTQDGSIKQLDIMGLFVAIGH 243
                  3457777778888887777777777778888888888888777777775 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.2   2.9e+03       9      37 ..       6      34 ..       3     114 .. 0.68
   2 ?   13.4   0.0   6.1e-05     0.078       6      45 ..     143     182 ..     141     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvva 37
                   + ++ G G+ +++ +   ++a+ + ++++
     EGE27703.1  6 RLIILGSGPAGYSAAVYAARANLNPVIIT 34
                   56677888777776666666665555544 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 6.1e-05
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleagakvtvvapevkeele 45 
                    k++kv vvGgG+ A + +  l +   +vt++  + +  +e
     EGE27703.1 143 KNQKVAVVGGGNTAVEEALYLSNIASEVTLIHRRDTLRAE 182
                    789****************************998644433 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.6   3.4e+03      12      42 ..       4      34 ..       2      36 .. 0.83
   2 ?   -1.0   0.0       1.3   1.7e+03      73      89 ..     101     117 ..      64     129 .. 0.72
   3 ?   11.1   0.0   0.00024       0.3      10      55 ..     142     187 ..     136     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.6
                  T-EEEEES-SHHHHHHHHHHHCCT-CEEEEE CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlakgvkkvvva 42
                  +++ +++G G  +  +a + ++++++ v+++
    EGE27703.1  4 HHRLIILGSGPAGYSAAVYAARANLNPVIIT 34
                  5688999***999999999888888888876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
                   HHT-SEEEE-SSSSS-S CS
  Shikimate_DH  73 laeadvvisataseepi 89 
                   +  +d +i+at+++   
    EGE27703.1 101 VYTCDALIIATGATAQY 117
                   45678888888877655 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00024
                   .TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHH CS
  Shikimate_DH  10 lkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaee 55 
                   +k++kv ++G G++a + a +L++   +  ++  R+  ra+++ ++
    EGE27703.1 142 YKNQKVAVVGGGNTAVEEALYLSNIASEVTLIHRRDTLRAEKILQD 187
                   5799*******************999999999999999**997654 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00015      0.19     139     218 ..     104     179 ..      95     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
    FMO-like 139 fdavmvctGhhvnphlplesfpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeqvllstrsGsw 218
                  da+++ tG  +  +l les    +kf Gq + +    +   +k+++v v+G Gn++ + a  ls+ a +v l  r+ + 
  EGE27703.1 104 CDALIIATGA-TAQYLGLESE---QKFMGQGVSACATCDGFFYKNQKVAVVGGGNTAVEEALYLSNIASEVTLIHRRDTL 179
                 5788888885.5668888874...7999999999999999999****************************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 2402.84
//
Query:       EGE27704.1  [L=606]
Description: putative acyl-CoA dehydrogenase FadE [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-26   92.2   0.7    2.7e-26   92.2   0.7    2.0  2  Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
    5.2e-18   65.7   3.0    8.1e-17   61.8   1.1    3.1  2  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    9.1e-18   64.3   0.1    3.4e-17   62.4   0.0    2.1  2  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    9.9e-18   64.9   0.0    5.8e-17   62.4   0.0    2.2  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
      6e-08   32.6   0.8    1.2e-07   31.6   0.0    2.0  2  AcylCoA_DH_N   Acyl-CoA dehydrogenase N terminal
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.022   15.0   0.0    1.4  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_C  Acetyl-CoA dehydrogenase C-terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.59   1.8e+03      13      32 ..     366     385 ..     349     394 .. 0.62
   2 !   92.2   0.7     9e-30   2.7e-26      11     124 .]     485     598 ..     468     598 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.59
  Acyl-CoA_dh_C  13 alkelaaaleaalealqeat 32 
                    + +++a++l++a+++  e++
     EGE27704.1 366 HTARYADKLAEAVAKGDETA 385
                    46777777777777766655 PP

  == domain 2  score: 92.2 bits;  conditional E-value: 9e-30
  Acyl-CoA_dh_C  11 raalkelaaaleaalealqeateallakaakgdpeealaaavpyLelfGdvvigwlllrqalaAqakla.agekdaafyegKlatarfFaervLPr 105
                    ++++++++  l++ +++++ +t++ll +a+k d + + aa+ ++L++ G+v++++ ++r+a+++ +k++  ge+ ++fy +K +ta+f++e++LPr
     EGE27704.1 485 DKEMRKYVWVLTKLCAEWNMLTARLLLTARK-DRDIVSAASDDFLMYSGYVMMAYHWARMAAVSFDKIKnGGEQPKEFYIAKTQTAEFYFEKILPR 579
                    4589*************************99.*************************************54556677******************* PP

  Acyl-CoA_dh_C 106 aaalaaaieagddslmeld 124
                     +a+a++++  ++++m++d
     EGE27704.1 580 SSAHAESMTVPSETMMQMD 598
                    *****************96 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   1.1   2.7e-20   8.1e-17       1     145 [.     282     454 ..     282     460 .. 0.92
   2 ?   -0.0   0.0      0.31   9.2e+02      76     100 ..     549     573 ..     533     576 .. 0.75

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 2.7e-20
                    TBHHHHHTTTT--S-----..-SHHHHHHHHHHHHHHHTS............B-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH-------- CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheRlavaaaalglarraleealeyarrr............kafgkplidhqlvreklaemaaeleaarllvyraaealdagkpd 84 
                    +kG++++ + +n  R++++++ l+ ++  ++++l ya++r             +   ++i h  vr++l + +a +e+ar+++y++a+ +d+ +++
     EGE27704.1 282 NKGLKAMFTYMNTARIGTGIQGLAHIELSFQNSLPYAKERrsmralsgvkepNQPADAIIHHADVRRMLLTQKAFAEGARSMIYHTARYADKLAEA 377
                    79**************************************666666666554455678******************************99988888 PP

                    ................HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSGGGHHHHHHHHTHHHHHSSS-HHHHHHHH CS
  Acyl-CoA_dh_1  85 ................raeasmaKlfaselaqevadlamqllGgaGyleeypverlyrdarvlrigeGtseiqrnii 145
                                    +  + ++K f +el  e+a+   q++Gg+Gy +e ++e ++rdar+ +++eGt+ +q +++
     EGE27704.1 378 vakgdetaikkwddkmGFFTPILKGFLTELGIEAAKHGQQIYGGHGYIKESGMELIARDARIATLYEGTTGVQALDL 454
                    8889999*****************************************************************97654 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.31
                    H--------HHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_1  76 ealdagkpdraeasmaKlfaselaq 100
                     ++++g+++++e  +aK +++e+  
     EGE27704.1 549 DKIKNGGEQPKEFYIAKTQTAEFYF 573
                    378889999***********99876 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.1e-20   3.4e-17       2      95 ..     163     271 ..     162     273 .. 0.91
   2 ?   -3.4   0.0       3.9   1.2e+04      82      96 ..     299     313 ..     292     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.1e-20
                    EE---SS-SS-GGG---EEEEETT.EEEEEEEEEEEETTTT....-SEEEEEEE..TS---.----EEEEEEE..GG..........GEEE----- CS
  Acyl-CoA_dh_M   2 falTEpqaGsdvasvkttaaerdggeyvlnGeKiwitnaai....atlalvlar..tekpd.rarglslflvprdap..........gvsvrriee 80 
                    ++lTE q G+d++++kt+a+++++g+y+++G+Ki+i+ +++    + +++vlar   +    +++g+slf+vp+  p           v  + ie+
     EGE27704.1 163 MCLTEAQCGTDLNQMKTRAVPNADGSYAITGSKIFISAGEHdlteNIVHIVLARlpDA--PaGTKGISLFIVPKFLPnadgeadkrnAVACGSIEH 256
                    8****************************************99988899*****5333..357**********98888899999**99999***** PP

                    BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M  81 klGlrglptgelvfe 95 
                    k+G+ + +t+ + f+
     EGE27704.1 257 KMGITSSATCVINFD 271
                    **********99998 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.9
                    SS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M  82 lGlrglptgelvfed 96 
                    +G++gl++ el f++
     EGE27704.1 299 TGIQGLAHIELSFQN 313
                    699*******99986 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.9e-20   5.8e-17       3     113 .]      38     158 ..      36     158 .. 0.89
   2 ?   -0.7   0.0      0.72   2.1e+03       9      47 ..     372     411 ..     352     462 .. 0.59

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.9e-20
                    HHHHHHHHHHHHHHHHTHHHHHHHHHHT.S.......GH...HHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHH CS
  Acyl-CoA_dh_N   3 eqealrdtvrefaeeelaphaaewdeeg.e.......fp...relwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhss 87 
                      +++ + +++fae+ lap  + +d+eg +       +p   +e+++++ e G+ +i++pe++gG++l +  ++i  e ++ a++++a+++g+ ++
     EGE27704.1  38 SVDMILEGFADFAENILAPLYQPADAEGcTfkdgevtTPtgfKEAYQQFVEGGWQAISYPEKFGGMNLPMSLNLIKSEMMGTANWPWAMYPGLTTG 133
                    5679999*****************999955666666633444567********************************************9999876 PP

                    TTHHHHHHHS-HHHHHHHHHHHHTTS CS
  Acyl-CoA_dh_N  88 lvapailrfGteeqkrryLpklasge 113
                     + ++il++G +eqk  yLpkl+sge
     EGE27704.1 134 SI-NTILQYGDDEQKSVYLPKLISGE 158
                    66.8*********************8 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.72
                    HHHHHHHHHHTHHHHHHHHHHTSGHHHHHHHH.HHTTCTS CS
  Acyl-CoA_dh_N   9 dtvrefaeeelaphaaewdeegefprelwkkl.aelGllg 47 
                    d+++e +++  +  +++wd++  f   ++k +  elG+ +
     EGE27704.1 372 DKLAEAVAKGDETAIKKWDDKMGFFTPILKGFlTELGIEA 411
                    3333333333333345555444333334444335555544 PP

>> AcylCoA_DH_N  Acyl-CoA dehydrogenase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     4e-11   1.2e-07       1      25 [.       3      28 ..       3      35 .. 0.89
   2 ?   -2.1   0.1       1.4   4.1e+03      25      31 ..      43      49 ..      43      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 4e-11
  AcylCoA_DH_N  1 qYkAPlRDmrFvLyEvLdaea.laal 25
                  +YkAPlRD++F+ +E+Ld++a ++ l
    EGE27704.1  3 TYKAPLRDIKFLINEMLDYQAhYKTL 28
                  6********************88877 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
  AcylCoA_DH_N 25 lPgfada 31
                  l+gfad+
    EGE27704.1 43 LEGFADF 49
                  79****8 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   7.5e-06     0.022      54     132 ..     360     446 ..     347     447 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.5e-06
                    HHHHHHHHHHHHHHHHHTT----HHHHHHHHHH........HHHHHHHHHHHHHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSGGG CS
  Acyl-CoA_dh_2  54 Aralleraaaraealaaagkevtvedraearra........aalavelaiaavdalfeaaGgsalrkesplqRlwRDahaaaaHaal 132
                    Ar +++++a+ a +la+a ++ +++  +++  +        + +++el i+a++   ++ Gg+++ kes ++ + RDa++a+ ++++
     EGE27704.1 360 ARSMIYHTARYADKLAEAVAKGDETAIKKWDDKmgfftpilKGFLTELGIEAAKHGQQIYGGHGYIKESGMELIARDARIATLYEGT 446
                    66666665555555444444433333333333344677777999**************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4275.63
//
Query:       EGE27705.1  [L=47]
Description: hypothetical protein EA1_01159 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.049   14.6   2.1      0.051   14.5   1.5    1.4  1  Pup       Pup-like protein
        0.2   11.7   0.0       0.24   11.4   0.0    1.1  1  DUF2205   Short coiled-coil protein


Domain annotation for each model (and alignments):
>> Pup  Pup-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.5   5.6e-06     0.051      26      50 ..       2      26 ..       1      33 [. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.6e-06
         Pup 26 ssevkerkeelsedvDdlLDeIDev 50
                +++++ +++el +d Ddl D+ D+v
  EGE27705.1  2 TEQLQTQADELFDDLDDLFDDFDGV 26
                578999*****************99 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.6e-05      0.24      19      43 ..       3      27 ..       1      31 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
     DUF2205 19 erLqqqakeLqssLqaLaervdeVk 43
                e+Lq+qa+eL + L++L++  d V 
  EGE27705.1  3 EQLQTQADELFDDLDDLFDDFDGVA 27
                79*****************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 347.10
//
Query:       EGE27706.1  [L=263]
Description: shikimate 5-dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-20   72.3   0.1    6.2e-20   71.3   0.1    1.6  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom
    2.1e-13   50.5   0.0    3.3e-13   49.9   0.0    1.2  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
    1.1e-07   31.5   0.1    2.1e-07   30.6   0.1    1.4  1  SDH_C           Shikimate 5'-dehydrogenase C-terminal domain
     0.0016   19.0   0.1     0.0031   18.1   0.1    1.4  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0022   18.4   0.0     0.0044   17.4   0.0    1.5  1  NAD_binding_7   Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.1   1.7e-23   6.2e-20       1      83 []       6      93 ..       6      93 .. 0.94

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 1.7e-23
                    EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-S..CCTHHHHHHHHHHTTESEEEE-TTSCCHHHGGSS...EE-HHHHHHT--SEE CS
  Shikimate_dh_N  1 viGnpikhSlSPaihnaafkalglngsyeafeve..edelekaveelralglaGlnvTiPfKeaviplld...elseeAkaigAvNti 83
                    viGnpi+hS+SP+ih+a++++ gl++sy+    +  +d+++++v+++ a g  G+n+T+PfKe +++++    +ls +A a+gAvNti
      EGE27706.1  6 VIGNPIDHSKSPQIHTAFARSVGLPVSYQKQYCPndADSFTAVVSAFFAGGGVGANITLPFKEMAFEMIKsngRLSTHALAAGAVNTI 93
                    89***************************9999877899*************************99998644479************8 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   9.3e-17   3.3e-13       9      87 ..     120     196 ..     113     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 9.3e-17
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisatasee 87 
                   +l++kk+ liGaG  a+ v+  Ll++g++ + ++NRt+ +a +l++e+++++++a++l+elk+   ++dv+i at++++
    EGE27706.1 120 ELDNKKIALIGAGGAARGVILPLLEAGAH-ISIFNRTFLKATNLVNEFQSDKLSAHSLDELKT-GGKFDVIINATSATT 196
                   599*************************9.*******************************95.589*********997 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.1   5.8e-11   2.1e-07       1      23 [.     236     258 ..     236     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 5.8e-11
                 HHHHHHHHHHHHHHHHHS----H CS
       SDH_C   1 GLgMLveQgaeqFelWTGrepPv 23 
                 G gML++Q+ ++Fe WTG++ + 
  EGE27706.1 236 GFGMLIQQAKLSFEQWTGKTIDL 258
                 78*****************9886 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   8.6e-07    0.0031       1      70 [.     125     193 ..     125     207 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.6e-07
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC...-EEECECHHHHHHH-SEEEE-S- CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg...vkvtavdneeaaeeadvvvlavk 70 
                    ki++iGaG  ++++++ ll+ag    +i +  +r+  ka+ l +e++    ++ + d  ++  + dv++ a  
     EGE27706.1 125 KIALIGAGGAARGVILPLLEAG---AHISIF-NRTFLKATNLVNEFQsdkLSAHSLDELKTGGKFDVIINATS 193
                    79********************...****77.************99965555555555555557777776655 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06    0.0044       2      71 ..     118     194 ..     117     201 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
  NAD_binding_7   2 fldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele..elvk.laeeelekd.......legadlviaatdd 71 
                    +++l++kk+ ++G+G  A   +  lleaga++ +   ++   l+  +lv+ +++++l+++         ++d++i at+ 
     EGE27706.1 118 AIELDNKKIALIGAGGAARGVILPLLEAGAHISIFNRTF---LKatNLVNeFQSDKLSAHsldelktGGKFDVIINATSA 194
                    5899*********************************95...33222232233333322122222214458888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2071.28
//
Query:       EGE27707.1  [L=200]
Description: hypothetical protein EA1_01169 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.085   12.5   0.0      0.096   12.3   0.0    1.2  1  Wzy_C     O-Antigen ligase


Domain annotation for each model (and alignments):
>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.4e-06     0.096      31      80 ..      12     133 ..      10     177 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.4e-06
       Wzy_C  31 iifykrripfllllgilvgvilliilfv.................................lstnletlknitkafgkldkk................. 79 
                 i+f+k r  +l++++il++ ++l+++f                                   s+ +e+lk++     +++ +                 
  EGE27707.1  12 IFFKKIRKTWLIWAIILAVFVILFLTFRpmtkddalvkddgevkvyqpvvydtatwqkatkTSNEIESLKAQLGSTATTEEAldfygrratryrfstpy 110
                 556666667888888777666666666588888888888888888888777777777766655555555544333333322255555555555555555 PP

       Wzy_C  80 ......................k 80 
                                       +
  EGE27707.1 111 eppfyliesenflevvwyyaasT 133
                 55555555555555555554542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1201  (0.0669864); expected 358.6 (0.02)
Passed bias filter:                      847  (0.0472419); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 1624.06
//
Query:       EGE27708.1  [L=274]
Description: aminodeoxychorismate lyase apoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-20   71.9   0.0      9e-20   71.5   0.0    1.1  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0     5e-24     9e-20       1     219 [.      29     260 ..      29     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 5e-24
  Aminotran_4   1 glfEtmrvyngeiffldeHleRLrksaellglelpfdeeelrkileelleannsengrlrllvsrgggglg..aatsepsvavyvsalppgpeseke. 95 
                  g+f t+ v++g+i+f + H  R+ +++ ++  +l++d +e+++ l++l+ + +++   ++++++r   +++     s + + v+++ +p + ++ ++ 
   EGE27708.1  29 GFFSTIGVRQGQILFAQLHHIRITHGLTIF--KLNLDVDEMMTCLSKLAHQMTEGI--IKIIITRPRQSMRgyGFLSVQPAQVLIKVMPSAIYQGVSf 122
                  6899**************************..***********************9..*******999999963333344444444444444444447 PP

  Aminotran_4  96 ............lplvtssdvrrdapsplpgaKtlnyldnvlarreakerg.ad....evllvdedgnvtEgstsNvfivkggelitPplssgiLpGi 176
                              + +++++  + + p +l+g+K +  ++++ a++e   +  +d    + l+ + +g+++++++ Nvf + g  ++tP ++++++ G+
   EGE27708.1 123 ikgvpiqptiprQMVCLTH-KLSHRPPHLAGIKLIGATEQIFAHAELLYHQsMDdgilDGLVGNVHGEWVCATMGNVFYRLGQNWYTPLVDKSGVLGV 219
                  7789999999887889999.9999999****************9998765525577779*************************************** PP

  Aminotran_4 177 trrallelakalgl..eveereitlkdleeadeafltntlrgvlp 219
                  +r a++++    gl   v+er +t +dl+   +++ tn++rg++ 
   EGE27708.1 220 MRCAVIQS----GLlgDVKERLFTNADLDFVNGLITTNAVRGITA 260
                  ********....66679*************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2352.08
//
Query:       EGE27709.1  [L=340]
Description: aminodeoxychorismate lyase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-81  272.1   0.3    6.4e-81  271.9   0.3    1.0  1  YceG            YceG-like family
  ------ inclusion threshold ------
      0.065   13.3   0.0       0.11   12.5   0.0    1.3  1  Cytomega_TRL10  Cytomegalovirus TRL10 protein
      0.083   12.9   0.0        0.2   11.6   0.0    1.7  1  pRN1_helical    Primase helical domain
       0.15   11.5   0.1        1.2    8.6   0.0    2.3  2  DUF2452         Protein of unknown function (DUF2452)


Domain annotation for each model (and alignments):
>> YceG  YceG-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.9   0.3   1.4e-84   6.4e-81       2     274 ..      30     329 ..      29     330 .. 0.86

  Alignments for each domain:
  == domain 1  score: 271.9 bits;  conditional E-value: 1.4e-84
                 EE-TT--HHHHHHH.HHHTTSSS-HHHHHHHHHHHT------EEEEE-TT--HHHHHHHHHCTSB..S..SEEE-TT--HHHHHHHHHHSTTS-HHHHH CS
        YceG   2 tipegsslseiaek.LeeagviksaeafkllaklkkkkalkaGeyelkkgmsleeilekLtkgkq..ekrkvtipegltleqiaeklekkaelskeell 97 
                 t+++g++++++++k   ++ +++sa + k+++ l ++k+l+aG+y++++g+sl+++++ L+kg    e  ++ i+eg+t+++++++l+++ ++  + l+
  EGE27709.1  30 TVDKGETYHSLLSKkPWSDAFLSSAFVTKAYVALATDKSLQAGNYQVPAGASLAQMIRILNKGGMatEF-SLRIIEGKTVKELYHTLKTTDGVVLKVLT 127
                 6788888887766533445667778999******99999************************553234.6*****************88777665555 PP

                 ................S-GGGG-TT-..........STTTT-S-SCEE--SSS--HHHHHHHHHHHHHHHT.HHH......HCT--HHHHHHHHHHHHH CS
        YceG  98 ................kaskeeklkv..........ekleGylfPdtYefkkgtsaeeilkrmlaefekvl.kraek..akasgltpyevltlASivek 167
                                 +        v           +leG+++P+tY+f++gt++ eil+r+++ + k+l k++e+  ++++++tpy++l++ASi+ek
  EGE27709.1 128 ppadgyswtdvardnkA--------VaqaleiespnGNLEGMFAPNTYQFSHGTTDLEILRRLYQDQIKILnKAWESrdETLPYQTPYDALIMASIIEK 218
                 99999988766443320........12223445555788****************************99888444445689****************** PP

                 H--SSS-HHHHHHHHHHHHHTT-----HHHHHHH.T...-S---CCHHC---TT-TTTSSSS-SS-SS---HHHHHHHHS-------EEEE-...-EEE CS
        YceG 168 EaakaeerpkvAsVflnRLkkgmrLqsDpTviYg.g...kgrltkkdletdspYNTYkikGLPpgPIanPgkaaieAalnpaktdylYFvakkdgthaF 262
                 E+++++er++v++Vf+nRL++gmrLq+DpT+iYg     +g+++++++++++ YNTY+i+GLPp+PIa P++a+i+Aa++pa+td++YFva+++g+h+F
  EGE27709.1 219 ETGVKQERQMVSAVFVNRLRQGMRLQTDPTIIYGmFdryDGKIYRSNIAEKTDYNTYQIDGLPPTPIALPSAASIKAAMHPADTDVIYFVATGSGGHTF 317
                 **********************************74689999******9******************************************988***** PP

                 ESSHHHHHCT-X CS
        YceG 263 aktleeHnknva 274
                 ++t++eH+k+va
  EGE27709.1 318 SRTYQEHQKAVA 329
                 **********98 PP

>> Cytomega_TRL10  Cytomegalovirus TRL10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.5e-05      0.11      65     106 ..       4      44 ..       2      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
  Cytomega_TRL10  65 fvatlivllvvffviyareeeknntgtevdqclayrsltrkk 106
                     +vatl+vl+vv+  iya   + ++    vd+  +y sl  kk
      EGE27709.1   4 LVATLVVLFVVYQSIYATTGHSEHIL-TVDKGETYHSLLSKK 44 
                     79***************988777655.579999999999888 PP

>> pRN1_helical  Primase helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.5e-05       0.2      88     117 ..     166     195 ..     135     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.5e-05
  pRN1_helical  88 yvllshgatdldvleqllpedskvfepkwd 117
                    + +shg+tdl++l +l  ++ k+++  w+
    EGE27709.1 166 TYQFSHGTTDLEILRRLYQDQIKILNKAWE 195
                   5789**********************9997 PP

>> DUF2452  Protein of unknown function (DUF2452)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00027       1.2      89     123 ..      21      56 ..      11      74 .. 0.79
   2 ?   -0.1   0.0      0.13   5.7e+02      87     110 ..     244     267 ..     223     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00027
     DUF2452  89 kpGkiYhLykresgqkyFsmlsPeeWge.sapheyl 123
                   G+  h+   ++g++y s+ls + W++   + +++
  EGE27709.1  21 TTGHSEHILTVDKGETYHSLLSKKPWSDaFLSSAFV 56 
                 6799999*******************9944455554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.13
     DUF2452  87 kkkpGkiYhLykresgqkyFsmls 110
                 +  p  iY ++ r +g+ y s ++
  EGE27709.1 244 QTDPTIIYGMFDRYDGKIYRSNIA 267
                 5678899**********9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2539.15
//
Query:       EGE27710.1  [L=206]
Description: thymidylate kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-41  142.6   0.0    1.3e-41  142.4   0.0    1.1  1  Thymidylate_kin  Thymidylate kinase
      2e-07   31.4   0.1      5e-07   30.1   0.0    1.6  2  AAA_28           AAA domain
     0.0021   17.1   0.0     0.0028   16.7   0.0    1.3  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0025   17.7   0.0     0.0052   16.7   0.0    1.5  1  MobB             Molybdopterin guanine dinucleotide synthesis
     0.0056   17.2   0.0     0.0087   16.6   0.0    1.6  1  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.011   16.2   0.1      0.018   15.4   0.1    1.7  1  AAA_16           AAA ATPase domain
      0.014   15.7   0.0      0.022   15.0   0.0    1.4  1  AAA_22           AAA domain
      0.056   13.0   0.0       0.09   12.3   0.0    1.3  1  PPK2             Polyphosphate kinase 2 (PPK2)
      0.062   13.7   0.0        0.1   13.0   0.0    1.4  1  AAA              ATPase family associated with various cellul
      0.086   13.0   0.1       0.23   11.6   0.1    1.8  1  AAA_33           AAA domain
      0.094   12.6   0.1       0.19   11.7   0.1    1.4  1  NTPase_1         NTPase
       0.11   11.4   0.0       0.16   10.8   0.0    1.2  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN


Domain annotation for each model (and alignments):
>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.0   8.5e-45   1.3e-41       1     185 []       8     199 ..       8     199 .. 0.91

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 8.5e-45
                      EEESTTSSHHHHHHHHHHHHHHTTE.EEEESSSTTSHHHHHHHHHHH.TCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-HHHHH CS
  Thymidylate_kin   1 iEGlDGaGKttqaellkerlkeegikvvltrepggteiGekirelll.keeeleeqteallfaadriehleekikpalkqgktvivdRylfSsl 93 
                      +EG +G+GKtt +e+l  rl ++gi+vv+trepgg+e++e++r+l l  + +++  te ll +a+r++hl ++i pa+k+gk+v++dR+ +S++
       EGE27710.1   8 FEGTEGVGKTTAIEALITRLVDRGIQVVRTREPGGSELAEQLRQLFLnPNANMNADTEILLMFAARSDHLHQVILPAIKSGKWVVSDRFFDSTV 101
                      8********************************************999********************************************** PP

                      HHHHTTTTTT.....CHHHHHHGGGTTSE-SEEEEEESSHHHHHTSCCTTSSTTTSHHHHHHHHHHHHHHHHHHHH.TTSTEEEEETTS-HHHH CS
  Thymidylate_kin  94 aYqgakegvd.....ldlvlslnedvllkPdltflldvdpevalkRlakrdeldeeeeeqldflrkvrerylelak.ederiliidasksieev 181
                      aYqg+++  +     +++ l ++++v+  Pd+t+ ld+d+  +++R+akr+  d+ e+ ++ f+++v +++        +ri+ ida+  + ev
       EGE27710.1 102 AYQGFGRYHGkqaalAKIELLIEQFVPIYPDVTLWLDLDVVMGMQRAAKRSAADRLEANDIAFFERVYQGLAYQHSqHSNRIHRIDANGTVAEV 195
                      ****976444111114455556666666*****************************************987777779************9999 PP

                      HHHH CS
  Thymidylate_kin 182 heeI 185
                       ++I
       EGE27710.1 196 AARI 199
                      8876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   3.3e-10     5e-07       2     102 ..       6     118 ..       5     180 .. 0.61
   2 ?    0.1   0.1      0.58   8.7e+02      62      87 ..     148     173 ..     136     197 .. 0.61

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.3e-10
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv..pEaareileeklakgedalpwvedllafaervleeqleeeaaa......aankvlfcDrglldtlaY 88 
                 i + G+e+ GKTt +eaL  r    g++vv  +E++   l e+l++ + + ++     + +++++ ++++++  +      +++k++++Dr +  t+aY
  EGE27710.1   6 ISFEGTEGVGKTTAIEALITRlvdrGIQVVrtREPGGSELAEQLRQLFLNPNAN-MNADTEILLMFAARSDHLHQvilpaiKSGKWVVSDRFFDSTVAY 103
                 6789***************766777************99999998888666654.222333222222222222222455689*********99999999 PP

      AAA_28  89 a..rayggeaeaelea 102
                     +y+g+ +a+l +
  EGE27710.1 104 QgfGRYHGK-QAALAK 118
                 844445555.555555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.58
      AAA_28  62 eqleeeaaa.aankvlfcDrglldtla 87 
                 ++++ +a++ +an++ f++r     la
  EGE27710.1 148 AAKRSAADRlEANDIAFFERV-YQGLA 173
                 333444444577777777763.33444 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.8e-06    0.0028      31      60 ..       5      34 ..       2      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.8e-06
                EEEEEE-TTSSHHHHHHHHHHHHHCTT--E CS
        MeaB 31 vvGltGvPGaGkstlvealglelrrrGkrv 60
                 + + G+ G+Gk t++eal+++l++rG +v
  EGE27710.1  5 FISFEGTEGVGKTTAIEALITRLVDRGIQV 34
                57789**********************998 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.5e-06    0.0052       2      30 ..       6      34 ..       5      40 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.5e-06
        MobB  2 lgivgksgsGKTtLleklipelkarglrv 30
                +++ g++g GKTt +e li+ l +rg++v
  EGE27710.1  6 ISFEGTEGVGKTTAIEALITRLVDRGIQV 34
                67889**********************98 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.8e-06    0.0087       3      56 ..       8      62 ..       6     165 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.8e-06
      AAA_18  3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe...aldeskrldedk 56
                  Gt GvGKtt  ++L  rl  +++ ++v++ +++  ++ +e   +l  +  ++++ 
  EGE27710.1  8 FEGTEGVGKTTAIEALITRL--VDRGIQVVRTREPGGSELAEqlrQLFLNPNANMNA 62
                68**************9999..99999999999999999988655444444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1   1.2e-05     0.018      27      80 ..       6      51 ..       2     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
      AAA_16 27 vllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalaree 80
                + + G  GvGK++ +++l ++l ++g+ ++r++          s la++l r +
  EGE27710.1  6 ISFEGTEGVGKTTAIEALITRLVDRGIQVVRTREPGG------SELAEQL-R-Q 51
                667799***********************99998888......4566666.3.3 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.5e-05     0.022       5      66 ..       3      58 ..       1      85 [. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralgl 66
                 +++   G  G+GKTt ++ l  +l+ +      + +vv+   p+++++++ lr+l+ + + 
  EGE27710.1  3 GKFISFEGTEGVGKTTAIEALITRLVDR------GIQVVRTREPGGSELAEQLRQLFLNPNA 58
                6788889******************754......6666666666666555555555544443 PP

>> PPK2  Polyphosphate kinase 2 (PPK2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     6e-05      0.09      35      81 ..       7      53 ..       3      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6e-05
                EEEESTTS-HHHHHHHHHTTS-GGG-EEEE--S--HHHHTS-TTHHH CS
        PPK2 35 ifegrDaAGKgGaikrvtealnprvarvvalkaPteeEksqwylqRy 81
                 feg ++ GK  ai+ ++ +l  r+++vv  ++P   E +++  q +
  EGE27710.1  7 SFEGTEGVGKTTAIEALITRLVDRGIQVVRTREPGGSELAEQLRQLF 53
                69**********************************99998766655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.8e-05       0.1       3      51 ..       8      54 ..       6      87 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.8e-05
                EESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSSSTTHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakel...gvefleisgsellskyvgesekkirelfk 51
                + G+ G+GKT++++a+++ l   g++++++  +        e ++++r+lf 
  EGE27710.1  8 FEGTEGVGKTTAIEALITRLvdrGIQVVRTREPGGS-----ELAEQLRQLFL 54
                679****************96555666555544433.....55566666664 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00015      0.23       3      78 ..       7     100 ..       5     172 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
      AAA_33   3 llvGlpGsGKstlaerllkklg...avllssdt........lrrrlfgtdqqsktdytr..vldr.lyqilnelarkalsagrnvil....dat 78 
                  + G  G+GK+t +e l+ +l     +++++ +         +r+lf + + + +  t+  + +    ++l++++  a ++g+ v+     d+t
  EGE27710.1   7 SFEGTEGVGKTTAIEALITRLVdrgIQVVRTREpggselaeQLRQLFLNPNANMNADTEilLMFAaRSDHLHQVILPAIKSGKWVVSdrffDST 100
                 589**************88877777777777666677755533344434444444444432333313347777777777777766664444555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00012      0.19       6      30 ..      10      34 ..       6      41 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                --TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1  6 GppGvGKtTlvkkvlellkssgvkv 30
                G  GvGKtT ++ ++  l ++g++v
  EGE27710.1 10 GTEGVGKTTAIEALITRLVDRGIQV 34
                899******************9987 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.16      19      47 ..       7      35 ..       3      57 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
  TrwB_AAD_bind 19 livGttGsGKtqalekllrairargdrai 47
                    + Gt G GKt+a+e+l++ +  rg +++
     EGE27710.1  7 SFEGTEGVGKTTAIEALITRLVDRGIQVV 35
                   578****************9999986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1567.45
//
Query:       EGE27711.1  [L=53]
Description: hypothetical protein EA1_01189 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 478.14
//
Query:       EGE27712.1  [L=301]
Description: dihydrodipicolinate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-98  327.1   0.2    7.1e-98  326.9   0.2    1.0  1  DHDPS     Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.9   0.2    4e-102   7.1e-98       2     288 ..      12     297 ..      11     298 .. 0.99

  Alignments for each domain:
  == domain 1  score: 326.9 bits;  conditional E-value: 4e-102
                 -SEEEEE----B-TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE---SSHHHHHHHHHCCCCCT-SEE CS
       DHDPS   2 fsgiitalvtpfdedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakgripviagvGsnstseaiklakkaeeaGadgv 100
                 ++g++talvtp++ dg +d   l++li+++i++gv++lv +GttGE+atl ++e++++++  v+ + gripviag+G+nst+eai+l+  a++aGad +
  EGE27712.1  12 LKGVMTALVTPMKPDGSVDYDTLAQLIDWQIDEGVNALVAVGTTGEAATLAIDEHIDVIRFFVKQVAGRIPVIAGTGANSTREAIDLTMAAKAAGADFA 110
                 68************************************************************************************************* PP

                 EEE---SS---HHHHHHHHHHHHHCHSS-EEEEE-HHHHSHHHHHHHHHHHHTSTTEEEEEE-SS-CTHHHHHHCCCSTTSEEEES-GGGHHHHHHTT- CS
       DHDPS 101 lavtPYYnkpsqeglyqhfkaiieatdlpvilYnvpsrtgadlspetvkrLaelenivgvKeavgdleevikikkevgkdlviysGddelllsalslGa 199
                 l+v+PYYnkp+qeg+yqhfka++ a d p+i+Ynvp+rt++d+  +tv rLa ++niv++K+a+g+le+ i ++++vg+++v++sGdd ++l+ +++G 
  EGE27712.1 111 LLVVPYYNKPTQEGMYQHFKAVATAVDIPQIVYNVPGRTVVDMCEDTVSRLADIDNIVAIKDATGNLERGISLIRRVGERMVVLSGDDPTALELIKYGS 209
                 ***********************999************************************************************************* PP

                 SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHCTTSSSBB.--TTS--S-HHHHHHHHHHHHH CS
       DHDPS 200 dGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaepnvilvktalellGlvveatlrkPltpleeeekeeleallka 288
                 +G isvtsnia++ m q + ++ eG+++ea +++  + +l+ +lf e+ + +vk+al+ +G   +  +r P++ l+e ++e++ + lk+
  EGE27712.1 210 KGDISVTSNIAPKAMSQAFGLALEGHFEEAYQIHDTIVHLHRDLFIESSPQPVKYALHKMGKIGTG-IRLPMVWLAEHYHETIDNSLKK 297
                 *************************************************************99888.**************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2553.51
//
Query:       EGE27713.1  [L=90]
Description: hypothetical protein EA1_01199 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   12.2   0.1       0.27   11.2   0.1    1.5  2  DUF4223     Protein of unknown function (DUF4223)
       0.22   11.4   0.6       0.31   10.9   0.6    1.3  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> DUF4223  Protein of unknown function (DUF4223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     3e-05      0.27       3      35 ..       2      37 ..       1      39 [. 0.77
   2 ?   -2.8   0.0      0.73   6.5e+03      32      45 ..      56      69 ..      51      70 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3e-05
     DUF4223  3 klvkialvaavvs...tltaCtG..svenkeknCsYdY 35
                k++ki+  a+v++   +lt+Ct   ++  k +n s dY
  EGE27713.1  2 KFLKIT--AGVLTasmMLTGCTTtkNILSKRNNGSLDY 37
                567765..677776779****86337999999999999 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.73
     DUF4223 32 sYdYLlHPaisisk 45
                +++ L+H   s+s+
  EGE27713.1 56 EFTPLYHTPNSVSQ 69
                56668888778875 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   3.5e-05      0.31       7      25 ..       3      22 ..       2      23 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
  TAT_signal  7 FLKgs.AAaaAAaalggcaa 25
                FLK + ++++A ++l gc++
  EGE27713.1  3 FLKITaGVLTASMMLTGCTT 22
                9999989999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 704.08
//
Query:       EGE27714.1  [L=236]
Description: phosphoribosylaminoimidazole-succinocarboxamide synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-63  215.2   0.0    1.3e-63  215.0   0.0    1.0  1  SAICAR_synt  SAICAR synthetase


Domain annotation for each model (and alignments):
>> SAICAR_synt  SAICAR synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.0   0.0   7.1e-68   1.3e-63       2     251 ..       7     231 ..       6     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 215.0 bits;  conditional E-value: 7.1e-68
                  EEE-SSEEEEE-SSTTEEEEEEESEEEECCCTEEEEETTHHHHHHHHHHHHHHHHHH..--BSEEEE.....-SSSEEEEE-EEEESEEEEEEEE--H CS
  SAICAR_synt   2 lyeGKvrdvYeledddklllvakDrisAfdvvlkeeipgKGkvltqlsafwfeklek..ipnhliksldpeqlegrsmlvkklkmlpvEvvvRgyltG 97 
                  ly+GK+++vYe++++d+l+l++++++sAf++ + e++++KG+v+++++af+++kl++  i++h+ k+     l++ ++lvk+lkm+pvE+vvR+y++G
   EGE27714.1   7 LYTGKAKSVYETDHSDYLILHFRNDASAFNGEKMESLDRKGVVNNRFNAFIMQKLADagIETHFEKQ-----LSDDEVLVKRLKMIPVEAVVRNYAAG 99 
                  89**********999*****************************************558******66.....************************** PP

                  HH.......HH....HH..T--TT-EEEEEEEEEEE--CCCT.S-EE-HHHHH.HTT..-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEE CS
  SAICAR_synt  98 slwkeykksgkvcgirlpeglkegeklpepiftpstKaeegehDeniseeevvealg..teeeaeeieelalavyekaaelaaergiilvDtKlEFGl 193
                   l        k    rl  gl eg  l +p++++++K++ ++ D+++se++++ alg  t++e++++++l+l+v+e +++l++e +++lvD+KlEFGl
   EGE27714.1 100 GL-------MK----RL--GLSEGLPLLPPTYELFYKDDTLG-DPMLSESTAI-ALGyaTADELAQMQSLTLKVNEVLSKLFDEADLMLVDFKLEFGL 182
                  **.......88....99..**********************9.**********.88999*************************************** PP

                  ETTTTEEEEES--.STTTEEEEETTT.....GGGB-STHHHHTT-STHHHHHHHHHHH CS
  SAICAR_synt 194 deedgelvLaDevltpDssRfwdaetyeegkeqeslDKqfvRdwleeveekwkekler 251
                     +g++vL+De+ +pD +R+wd++t      +++lDK+++R+ l++v e+++e+++r
   EGE27714.1 183 F--QGRVVLGDEF-SPDGCRLWDKQT------KKKLDKDRFRQGLGDVVEGYEEVARR 231
                  9..7*********.************......9********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1760.29
//
Query:       EGE27715.1  [L=106]
Description: hypothetical protein EA1_01209 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.3   0.1      0.017   14.9   0.1    1.2  1  CutA1     CutA1 divalent ion tolerance protein
      0.013   15.2   0.0      0.022   14.5   0.0    1.3  1  DUF1965   Domain of unknown function (DUF1965)
       0.12   12.5   0.0       0.22   11.7   0.0    1.4  2  HisG_C    HisG, C-terminal domain


Domain annotation for each model (and alignments):
>> CutA1  CutA1 divalent ion tolerance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   2.9e-06     0.017      43      88 ..      58     103 ..      56     106 .] 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.9e-06
                 TEEEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSS-EEEEEEESEE CS
       CutA1  43 gkieedkEvllliktreekveelekrvkelhpyevpeiialpieag 88 
                 g++ + +E+++ +   e+k+ e++++ k+ hpye p+  +++ +++
  EGE27715.1  58 GQVSQVSEWKVEMIVPENKLYEVVEAYKRAHPYEAPAYEVYQTVDV 103
                 78999*******************************9888777665 PP

>> DUF1965  Domain of unknown function (DUF1965)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.7e-06     0.022      20      52 ..      63      97 ..      61     105 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.7e-06
                GGG-EEEEEEETTEEESSHHHHHHH..HTSTT--- CS
     DUF1965 20 pskWkvlGwlyngifYetteeFRaa..ikspgfkk 52
                 s+Wkv+ ++ ++++Ye +e+++ a  +++p ++ 
  EGE27715.1 63 VSEWKVEMIVPENKLYEVVEAYKRAhpYEAPAYEV 97
                589********************995567777765 PP

>> HisG_C  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.1   6.7e+03      41      60 ..       3      22 ..       1      27 [. 0.52
   2 ?   11.7   0.0   3.7e-05      0.22      28      61 ..      51      87 ..      35      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.1
                EEEEEEECCCHHHHHHHHHC CS
      HisG_C 41 aVsavveekevaevideLka 60
                 + + ++e ++ +v   + +
  EGE27715.1  3 KIVTYIPEPDLETVKTAMFE 22
                45555555555555555555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.7e-05
                S-EEEE-....SS-EEEEEEEEECCCHHHHHHHHHCT CS
      HisG_C 28 sPTvspla...degwvaVsavveekevaevideLkaa 61
                +PT+ ++    +   + V+++v+e++++ev++  k+a
  EGE27715.1 51 NPTIGKIGqvsQVSEWKVEMIVPENKLYEVVEAYKRA 87
                69999886555667789**************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 868.35
//
Query:       EGE27716.1  [L=503]
Description: anthranilate synthase component I [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-94  316.9   0.0    6.4e-94  314.3   0.0    1.9  2  Chorismate_bind  chorismate binding enzyme
    3.2e-33  114.9   0.0    1.6e-29  102.9   0.0    3.1  3  Anth_synt_I_N    Anthranilate synthase component I, N termina
  ------ inclusion threshold ------
      0.047   14.1   0.1        3.2    8.2   0.0    2.4  2  Phage_holin_3_1  Phage holin family (Lysis protein S)


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.069   4.1e+02      35      97 ..      29      96 ..      19     107 .. 0.68
   2 !  314.3   0.0   1.1e-97   6.4e-94       2     258 .]     226     486 ..     225     486 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.069
                     SS-B-HHHHHHHHHCTBSSSEEEEE.....EETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHSSS CS
  Chorismate_bind 35 eaavdplalyralrarnpapysfll.....eledsellgaSPElllkveggrrietepiaGTrargkt 97
                      ++ +p+++++++r+ np++y f       ++ +++++g    + ++ ++g   + + + GT + +kt
       EGE27716.1 29 MDDATPVSVFANIRQLNPKAYLFESvvggeRFARYSMIGLGKGVYFEYQDGVMRVGSELVGTVSSTKT 96
                     4677899*************998665555555556677777777777665522233445666655555 PP

  == domain 2  score: 314.3 bits;  conditional E-value: 1.1e-97
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETT.......EEEEEEESSEEEEEETTSEEEEECE CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleled.......sellgaSPElllkveggrrietepi 88 
                      ++++++ v+k+ke+i agd+ +vv+++rl+a+  ++ d+l++yralr  np+py f+l+ e+       ++++gaSPE+l ++e+g +++++p+
       EGE27716.1 226 QQKFCDDVQKIKEYILAGDVMQVVPAQRLSAK--SEADALSVYRALRYLNPSPYLFMLHGETfgttkspFDIIGASPEILSRIENG-TVTVRPL 316
                      789*****************************..88899*******************8877888889999*************66.******* PP

                      EEEEEHSSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCC CS
  Chorismate_bind  89 aGTrargktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgav 182
                      aGTr+rg++  ed ale+ell+d+Ke+aEhlm++dl rnd+g+v+++gsvkv++ + +erys+v+h++s++eg++++dv++ld+++a+fP+g++
       EGE27716.1 317 AGTRRRGSDMDEDLALEHELLNDQKEIAEHLMLIDLGRNDIGRVCEIGSVKVTDQMFIERYSQVMHIASNVEGRIRQDVDALDVFCATFPAGTL 410
                      ********************************************************************************************** PP

                      SEESHHHHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 183 tGaPkkrameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      +GaPk ram+iide+E+ rR v++Ga+gyl+ +g++++a++IRtav+kd++++++aGaG+vadSdp aE++Et++K
       EGE27716.1 411 SGAPKIRAMQIIDEVEPVRRTVFGGAIGYLGWHGNMDTAIAIRTAVMKDGQIHVQAGAGVVADSDPLAEWDETNKK 486
                      *************************************************************************998 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   2.7e-33   1.6e-29       1     141 [.      30     177 ..      30     178 .. 0.88
   2 !    7.0   0.0     0.001       6.2       5      55 ..     262     315 ..     258     350 .. 0.78
   3 ?    1.1   0.0     0.071   4.2e+02      89     100 ..     431     442 ..     409     451 .. 0.80

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 2.7e-33
  Anth_synt_I_N   1 ddltplsvylklaeee.hkflLeSaenegge..grySfigldpflelkskngeveveg.pegeeleeee..pldalrellerfrsaedse.ptelp 89 
                    dd+tp+sv++ +++ + +++l+eS+   gge  +ryS+igl +   +++++g ++v     g+ +++++  p+d +r+++ +f + ++   p+ + 
     EGE27716.1  30 DDATPVSVFANIRQLNpKAYLFESVV--GGErfARYSMIGLGKGVYFEYQDGVMRVGSeLVGTVSSTKTdqPFDEIRRFMGQFNIPTKDDvPNLPV 123
                    789************9*********8..55557**********999**********997334444444457*************775555898899 PP

  Anth_synt_I_N  90 fvgGlvGylgYDlvreie.klp.ksakddlnlpdarlilydtlivfDhkerrly 141
                    f+gGlvGy+gYDl+r ie  ++ + +++ lnlpd++l+l  ++++fD++e++l 
     EGE27716.1 124 FSGGLVGYFGYDLIRTIEpTVGhSDTPNPLNLPDLWLMLSTEVVIFDNLEHTLS 177
                    ******************99996779************************9985 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.001
  Anth_synt_I_N   5 plsvylklaeee...hkflLeSaeneggegrySfigldpflelkskngeveveg 55 
                     lsvy++l+  +   + f+L      + ++ + +ig++p +  +++ng v+v  
     EGE27716.1 262 ALSVYRALRYLNpspYLFMLHGETFGTTKSPFDIIGASPEILSRIENGTVTVRP 315
                    56777777776666699*****9988888**********99999*****99987 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.071
  Anth_synt_I_N  89 pfvgGlvGylgY 100
                     + gG++Gylg 
     EGE27716.1 431 TVFGGAIGYLGW 442
                    468*******95 PP

>> Phage_holin_3_1  Phage holin family (Lysis protein S)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00054       3.2      70      91 ..     119     140 ..     103     144 .. 0.85
   2 ?    3.4   0.0     0.018   1.1e+02      70      85 ..     427     442 ..     396     453 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00054
  Phage_holin_3_1  70 aslavviggliGflGvekirel 91 
                       +l v+ ggl+G++G + ir++
       EGE27716.1 119 PNLPVFSGGLVGYFGYDLIRTI 140
                      57899**************976 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.018
  Phage_holin_3_1  70 aslavviggliGflGv 85 
                          +v+gg+iG+lG 
       EGE27716.1 427 PVRRTVFGGAIGYLGW 442
                      4446899*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3663.81
//
Query:       EGE27717.1  [L=159]
Description: hypothetical protein EA1_01219 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.004   17.1   0.8     0.0055   16.7   0.8    1.3  1  DUF1275         Protein of unknown function (DUF1275)
  ------ inclusion threshold ------
        1.1    9.3   4.1        3.6    7.6   4.1    1.8  1  Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis 
        6.5    6.8  10.5        2.5    8.1   0.1    2.7  2  PsbI            Photosystem II reaction centre I protein (PSI


Domain annotation for each model (and alignments):
>> DUF1275  Protein of unknown function (DUF1275)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.8   9.2e-07    0.0055      51     119 ..       6      81 ..       2     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.2e-07
     DUF1275  51 lvsllaFvlGaalagllarrggrrrrlvllleallllaaallvpagsvsp.........lalallafamGlqnalfsr 119
                 ++ +++FvlGa+la l   +g  ++ +++++ +++l+ +++l+  g   +         ++ +l+ f++G    +  +
  EGE27717.1   6 FIVVGLFVLGAILAILKFIWGLFKKIWLIIIGIAVLFGISWLIKYGF--SiigldipiwIIFILTLFCLGYLSHTNEK 81 
                 5679*******999954446667888888899**********98665..34699999877888888888887777444 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.1    0.0006       3.6       5      84 ..      40     132 ..       1     138 [. 0.69

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0006
  Halogen_Hydrol   5 llsiliavivalvsffllgfsfflalliailggilvyvasrknkkkkhlkk................sglsrkelkyiretlkeakekikrleka 83 
                     +l++++++i   +s+++l++ ++++   +il ++ +   s +n+kk h +                 + l++k++ky +e l++a  k+ + +++
      EGE27717.1  40 VLFGISWLIKYGFSIIGLDIPIWII---FILTLFCLGYLSHTNEKKVHRAVakyftikemgdltditNFLDEKSIKYDQEILSQAIVKLVEDDQI 131
                     3444555555556666666666666...44444444444445666666554667888889888888777888899*********99999877666 PP

  Halogen_Hydrol  84 l 84 
                     +
      EGE27717.1 132 I 132
                     6 PP

>> PsbI  Photosystem II reaction centre I protein (PSII 4.8 kDa protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   4.6      0.05     3e+02      10      23 ..       3      16 ..       1      19 [. 0.85
   2 ?    8.1   0.1   0.00042       2.5      10      25 ..      61      76 ..      57      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.05
        PsbI 10 ivViffvslFvFGf 23
                i+++ +v+lFv G 
  EGE27717.1  3 IIIFIVVGLFVLGA 16
                7899999***9985 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00042
        PsbI 10 ivViffvslFvFGfLs 25
                i++if   lF  G+Ls
  EGE27717.1 61 IWIIFILTLFCLGYLS 76
                8**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1386  (0.0773049); expected 358.6 (0.02)
Passed bias filter:                      707  (0.0394333); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1139.54
//
Query:       EGE27718.1  [L=135]
Description: hypothetical protein EA1_01224 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.042   14.4   0.8       0.24   12.0   0.1    2.1  2  Tnp_P_element_C  87kDa Transposase


Domain annotation for each model (and alignments):
>> Tnp_P_element_C  87kDa Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.3e-05      0.24      29      87 ..      20      71 ..       1      77 [. 0.67
   2 ?    1.0   0.1     0.033     6e+02       7      24 ..      91     109 ..      87     129 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.3e-05
  Tnp_P_element_C 29 esfisasiftkAeiePel..kadeeeedlsdeeelssnsdsaieldeqeeDgleYivGyvi 87
                     +++is       +i P+l  + +  + +   +++ s+  d  + l+     gl++++Gy i
       EGE27718.1 20 KEIISR------NILPKLikHNQTSAAE--FVSSFSKGADD-FILQTERDEGLNFVAGYAI 71
                     334444......4899997533344444..46888888888.999999999********87 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.033
  Tnp_P_element_C   7 etdewlnld.tskelenet 24 
                      ++ +w+n++ +sk ++  +
       EGE27718.1  91 TQGSWINKKkQSKTFNVDE 109
                      5667887554666555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 986.97
//
Query:       EGE27719.1  [L=119]
Description: hypothetical protein EA1_01229 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00033   21.2   0.4     0.0042   17.6   0.1    2.1  2  PepSY_like     Putative beta-lactamase-inhibitor-like, PepSY-
  ------ inclusion threshold ------
      0.032   14.3   0.1      0.045   13.8   0.1    1.2  1  DUF600         Protein of unknown function, DUF600
        0.1   12.5   0.0       0.12   12.3   0.0    1.1  1  Helicase_IV_N  DNA helicase IV / RNA helicase N terminal


Domain annotation for each model (and alignments):
>> PepSY_like  Putative beta-lactamase-inhibitor-like, PepSY-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.061   3.6e+02      15      38 ..      15      42 ..      14      57 .. 0.63
   2 !   17.6   0.1   7.1e-07    0.0042      16      49 ..      71     104 ..      66     115 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.061
                E-TTS-EEEEE....-TTSEESGGGS-H CS
  PepSY_like 15 FdkkGeWkeie....gkkteiplsilpk 38
                F +++ Wkei+         i+++ +p+
  EGE27719.1 15 FVATAFWKEIKsfiqASIERIKTHLIPS 42
                6778889999933322233334444555 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 7.1e-07
                 -TTS-EEEEE-TTSEESGGGS-HHHHHHHHHH.TT CS
  PepSY_like  16 dkkGeWkeiegkkteiplsilpkavlkaikns.yp 49 
                 +++G+W+e+      +p + +p+ + + +kn+  p
  EGE27719.1  71 NERGQWQETI-MTRNVPANEIPEDIRRKVKNNrGP 104
                 679*******.8899****************9554 PP

>> DUF600  Protein of unknown function, DUF600
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   7.6e-06     0.045      48      97 ..      34      82 ..      18      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.6e-06
                EEEGGGGGGT--S-HHHHHHHHHHHHHHHHHHHHHHHHHHSS--SEEEEE CS
      DUF600 48 liysheipekynvseeeykkllkeLyelikeLreefkkeeqeaWtnltlt 97
                 i++h ip+   v  + y ++ + Ly + k L++ f+k+e+ +W++  +t
  EGE27719.1 34 RIKTHLIPSM-IVGFKTYLQTGNALYATAKALQKFFSKNERGQWQETIMT 82
                5666667764.488899***************************998775 PP

>> Helicase_IV_N  DNA helicase IV / RNA helicase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     2e-05      0.12      74     133 ..      21      81 ..      14     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
  Helicase_IV_N  74 weetqqfaqtllssyqqWs.keqvqaladvlqkkeeeieefvqqqkylstsevanlvekis 133
                    w+e ++f+q+ ++ ++++   +++   +++lq+  ++  + ++ qk++s++e  +++e i 
     EGE27719.1  21 WKEIKSFIQASIERIKTHLiPSMIVGFKTYLQTGNALYATAKALQKFFSKNERGQWQETIM 81 
                    9***************9963789999*******************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 857.50
//
Query:       EGE27720.1  [L=310]
Description: AAA family ATPase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-28   98.8   0.0    5.9e-28   97.9   0.0    1.5  1  AAA              ATPase family associated with various cellul
    2.3e-05   24.1   0.0      5e-05   23.0   0.0    1.5  1  AAA_lid_3        AAA+ lid domain
    0.00036   20.8   0.2     0.0058   16.9   0.0    2.4  3  AAA_22           AAA domain
    0.00077   18.8   0.1      0.011   15.0   0.0    2.0  2  DUF1350          Protein of unknown function (DUF1350)
     0.0023   17.9   0.2      0.008   16.2   0.2    2.0  1  AAA_5            AAA domain (dynein-related subfamily)
      0.003   17.2   1.4      0.045   13.4   0.1    2.6  3  Zot              Zonular occludens toxin (Zot)
     0.0034   16.6   0.0     0.0068   15.6   0.0    1.4  1  DAP3             Mitochondrial ribosomal death-associated pro
     0.0048   17.0   0.0      0.011   15.8   0.0    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0055   17.1   0.0      0.013   15.9   0.0    1.8  1  RNA_helicase     RNA helicase
     0.0089   16.4   0.0      0.054   13.9   0.0    1.7  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.024   14.3   0.1    1.6  1  AAA_24           AAA domain
      0.013   15.7   0.1      0.037   14.2   0.0    1.7  2  AAA_33           AAA domain
      0.014   15.1   0.0      0.025   14.4   0.0    1.3  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.039   14.0   0.9      0.068   13.2   0.1    1.9  1  ResIII           Type III restriction enzyme, res subunit
      0.046   12.8   0.0      0.088   11.9   0.0    1.4  1  Parvo_NS1        Parvovirus non-structural protein NS1
      0.059   12.3   0.0      0.091   11.7   0.0    1.4  1  AAA_6            Hydrolytic ATP binding site of dynein motor 
       0.06   13.0   0.1       0.15   11.8   0.1    1.8  1  Sigma54_activat  Sigma-54 interaction domain
      0.081   12.8   0.1       0.16   11.9   0.1    1.5  1  NACHT            NACHT domain
       0.15   11.6   0.0       0.24   10.9   0.0    1.4  1  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   6.3e-31   5.9e-28       3     130 ..      81     204 ..      79     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 6.3e-31
                 EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH....TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   3 lyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldgvk 97 
                 lyG pGtGKT+ a+a+a+ lg +++ i+  ++ skyvge++k+i++ f+ ake+    ilf+DE+da+ ++r    +++++++ +++ +++lt l++++
  EGE27720.1  81 LYGEPGTGKTMSAHAIAHALGKKLILINYGDIESKYVGETPKNIQAAFEFAKEND--AILFFDEADAILSRRvtnmTSATDTSVNQTRSVMLTLLNDYN 177
                 9****************************************************98..***************776666666667777777777777777 PP

                 TSSSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA  98 kkeskvivigatnrpdkldpallrgRfdrkiei 130
                 +     +vi atn ++++dpa++ +R+ ++ie 
  EGE27720.1 178 D-----TVIFATNFISNYDPAFM-RRILIHIEY 204
                 7.....8****************.799999875 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   5.3e-08     5e-05       1      43 [.     227     269 ..     227     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 5.3e-08
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedf 43 
                 ++dl  +++++eG SG D+++ +  Aa+ A  +g + +t e++
  EGE27720.1 227 SIDLPTIVKLSEGLSGSDISNAILLAAFSAKTEGCDLVTHENL 269
                 589***************************9999999999887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.2e-06    0.0058       4      29 ..      75     100 ..      71     128 .. 0.84
   2 ?    0.5   0.0       0.7   6.6e+02      93     106 ..     136     151 ..     122     184 .. 0.66
   3 ?   -1.6   0.0       3.1   2.9e+03      25      59 ..     173     218 ..     166     224 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.2e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 ++ i+ ++Ge+GtGKT+++  +++ l
  EGE27720.1  75 NKMIINLYGEPGTGKTMSAHAIAHAL 100
                 678899***************99988 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.7
      AAA_22  93 elliiDEaqh.lr.se 106
                 ++l  DEa+  l+ + 
  EGE27720.1 136 AILFFDEADAiLSrRV 151
                 68999****9663422 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.1
      AAA_22  25 lleqldeeakaee.........erpevv..fvtlpsstsskdllre 59 
                 l + +d +++a++         +r+ ++  ++tlp +++++ l+++
  EGE27720.1 173 LNDYNDTVIFATNfisnydpafMRRILIhiEYTLPDEETRTYLFNK 218
                 5555556666666666666666666666678888888888888765 PP

>> DUF1350  Protein of unknown function (DUF1350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-05     0.011      90     174 ..      91     179 ..      61     185 .. 0.87
   2 ?    5.3   0.0     0.011        11      37      99 ..     167     228 ..     159     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
     DUF1350  90 lpvyglghslgcklhll....igslyeveragnilvafnnypakqaiplldklltalaveftpspeetnkliqesyrvrrnllikfsnd 174
                 +  + + h+lg kl l+    i+s y +e   ni  af+    ++ai ++d+  + l+   t     t+  ++++ +v   ll  +++ 
  EGE27720.1  91 MSAHAIAHALGKKLILInygdIESKYVGETPKNIQAAFEFAKENDAILFFDEADAILSRRVTNMTSATDTSVNQTRSVMLTLLNDYNDT 179
                 577899********998777799***************************************************999999999888875 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.011
     DUF1350  37 rwlleelgeag.yvviatpfvntldhqaiarsvlnkleiilerlqkrgeltkallpvyglghsl 99 
                   +l+ l + +  v+ at f+  +d  a  r +l ++e++l   + r  l + ++p   l hs+
  EGE27720.1 167 SVMLTLLNDYNdTVIFATNFISNYDP-AFMRRILIHIEYTLPDEETRTYLFNKYIPN-KLPHSI 228
                 5567777765515677********96.78899*********9999999999988885.466665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   8.5e-06     0.008       4      30 ..      81     107 ..      78     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.5e-06
                 EE--SSSSHHHHHHHGGGGBS--EEEE CS
       AAA_5   4 LvGppGtgKselaerlaaalnreveyv 30 
                 L G+pGtgK++ a  +a+al++++  +
  EGE27720.1  81 LYGEPGTGKTMSAHAIAHALGKKLILI 107
                 89******************9988765 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.14   1.3e+02       3      17 ..      79      93 ..      77     106 .. 0.79
   2 !   13.4   0.1   4.7e-05     0.045      65     132 ..     120     192 ..      96     211 .. 0.80
   3 ?   -1.8   0.0       2.2   2.1e+03      16      46 ..     247     278 ..     234     301 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.14
         Zot  3 slvtGapGsgKtsga 17
                   +G+pG+gKt+ a
  EGE27720.1 79 INLYGEPGTGKTMSA 93
                5569********876 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.7e-05
         Zot  65 gaetlkefakwatidkgallviDEcqeifpvrakegrkd......pevinaftehRhlgwDivlltqdiskihk 132
                 +++ +++++  a+ +++a+l++DE+  i + r ++ ++       + +   +t +  ++ ++++ t  is+ + 
  EGE27720.1 120 TPKNIQAAFEFAK-ENDAILFFDEADAILSRRVTNMTSAtdtsvnQTRSVMLTLLNDYNDTVIFATNFISNYDP 192
                 4455555555555.69******************87766999998888899***************99997664 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.2
         Zot  16 gavkkdllpalkegRkiitnidGlr..lerieq 46 
                  a+   +  a+ eg+ ++t+ + l+  +e+i++
  EGE27720.1 247 NAILLAAFSAKTEGCDLVTHEN-LQnkIEAIQR 278
                 4555556667778888888655.4434555555 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.2e-06    0.0068      23      57 ..      74     109 ..      55     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.2e-06
                 --EEE..EE-SSSSSTTTTHHHHHHHGGGS--EEEEE CS
        DAP3  23 vkrlv..ltGekgsGKSvlLlqalayAlekgwvvlhv 57 
                 +++++  l+Ge+g+GK+++ ++a+a+Al k+ ++++ 
  EGE27720.1  74 DNKMIinLYGEPGTGKTMS-AHAIAHALGKKLILINY 109
                 566663379********98.9*************985 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-05     0.011       3     104 ..      76     174 ..      74     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
                 ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHH..HHHHTTT-HHHHTTSEEEEETGGG----....---------HHH CS
       AAA_2   3 iisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsr..ligappgyvgaeegGivllDEidKihpk....essgadvSregV 95 
                 ++ i l g+ g+Gkt+ a a+a  l     kkli ++  ++       ++v +    +++ +  ++e++ i+++DE d i ++     +s  d S +  
  EGE27720.1  76 KMIINLYGEPGTGKTMSAHAIAHALG----KKLILINYGDIES-----KYVGEtpKNIQAAFEFAKENDAILFFDEADAILSRrvtnMTSATDTSVNQT 165
                 5678899******************9....6999999998877.....5665411456677788899999***********998877677788888888 PP

                 HHHHHHHHH CS
       AAA_2  96 qrdLLqile 104
                   ++L +l 
  EGE27720.1 166 RSVMLTLLN 174
                 888888876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-05     0.013       2      29 ..      80     112 ..      79     186 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl.....klk 29 
                    lyG++g+GK++ a+ +a+al kkl     +++
    EGE27720.1  80 NLYGEPGTGKTMSAHAIAHALGKKLilinyGDI 112
                   58********************99966644222 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.8e-05     0.054      26      51 ..      78     103 ..      67     123 .. 0.82
   2 ?   -0.8   0.0       1.8   1.7e+03     123     147 ..     124     146 ..     114     181 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.8e-05
      AAA_16  26 lvllsGesGvGKsslvrellralekd 51 
                 ++ l+Ge+G+GK+  + ++++al k+
  EGE27720.1  78 IINLYGEPGTGKTMSAHAIAHALGKK 103
                 6789****************999988 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.8
      AAA_16 123 lkrllallsrderplvlvlDdlqwa 147
                 ++++++++++  +  +l++D+++ +
  EGE27720.1 124 IQAAFEFAKE-ND-AILFFDEADAI 146
                 5666677777.44.69999999944 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.6e-05     0.024       2      44 ..      76     121 ..      75     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-05
      AAA_24   2 klkiliyGpsgiGKTtlakel....gpkplfidtekGlksldadkfp 44 
                 k+ i +yG++g+GKT++a  +    g+k ++i+  +   s ++ + p
  EGE27720.1  76 KMIINLYGEPGTGKTMSAHAIahalGKKLILINYGD-IESKYVGETP 121
                 566889************999888777777776555.4445554444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.9e-05     0.037       4      99 ..      81     178 ..      78     187 .. 0.81
   2 ?   -1.9   0.0       3.6   3.4e+03      22      58 ..     258     295 ..     251     309 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.9e-05
      AAA_33   4 lvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqsktdytrvldrlyq.ilnelarkalsagrnvildatnlsr.rerarflklarrlgvp 98 
                 l G pG+GK+  a+ ++ +lg   +l++  ++ ++++g+ +++++   +++++  +   ++ a+  ls++ + ++ at +s  ++r+ +l l+++++  
  EGE27720.1  81 LYGEPGTGKTMSAHAIAHALGkkLILINYGDIESKYVGETPKNIQAAFEFAKENDAiLFFDEADAILSRRVTNMTSATDTSVnQTRSVMLTLLNDYN-- 177
                 6799*************************99999999998888887777655544413358999999999999999999997688889999998655.. PP

      AAA_33  99 v 99 
                 +
  EGE27720.1 178 D 178
                 4 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.6
      AAA_33  22 klgavllssdtlrrrlfg.tdqqsktdytrvldrlyqi 58 
                  +g+ l++  +l +++++ +  +s++ +++ +++++  
  EGE27720.1 258 TEGCDLVTHENLQNKIEAiQRSKSENSRKETKFQTRVV 295
                 55566777777777777653333444444444444444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.6e-05     0.025      36      95 ..      79     145 ..      67     163 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.6e-05
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvkl......kitsgPvlekagdlaalltnleekd.vlfideihr 95 
                 + lyG PG Gkt  a+ ia+ lg kl       i s  v e ++++ a +   +e+d +lf de   
  EGE27720.1  79 INLYGEPGTGKTMSAHAIAHALGKKLilinygDIESKYVGETPKNIQAAFEFAKENDaILFFDEADA 145
                 569********************99822222223455566778899888777666654899999765 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   7.2e-05     0.068       2      81 ..      52     127 ..      51     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.2e-05
                 -EE-HHHHHHHHHHT......TTSEEE..EEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG. CS
      ResIII   2 lelreyQeeaienlleklkskrdkrgl..ikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflsea 81 
                 + lr+yQ e+ e +  + ++k d++++  +  + GtGKT+ a +++ +l kk      l+l++  ++ ++   e  k ++ a
  EGE27720.1  52 IGLRQYQSEVFEHWGFSETHKFDNKMIinLYGEPGTGKTMSAHAIAHALGKK------LILINYGDIESKYVGETPKNIQAA 127
                 579***********94444344445551466689*****9998888888876......666666666666665555555444 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.3e-05     0.088     108     139 ..      70     101 ..      43     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.3e-05
   Parvo_NS1 108 skqlgkrntvwfyGpantGktnlaeaIakavp 139
                 ++++ ++  + +yG++ tGkt+ a aIa+a+ 
  EGE27720.1  70 THKFDNKMIINLYGEPGTGKTMSAHAIAHALG 101
                 46678888999******************985 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.6e-05     0.091      32      67 ..      76     111 ..      68     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.6e-05
       AAA_6  32 klggapaGpagtGKtEtvkdLakalakqvvvfncsd 67 
                 k+  +++G  gtGKt +   +a+al+k ++++n  d
  EGE27720.1  76 KMIINLYGEPGTGKTMSAHAIAHALGKKLILINYGD 111
                 5666889*************************9876 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00016      0.15      20      64 ..      74     115 ..      56     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
                      TSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TT CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipee 64 
                      ++++ + + Ge GtGK++ a+ai +a     k+++ +n ++i+++
       EGE27720.1  74 DNKMIINLYGEPGTGKTMSAHAIAHAL---GKKLILINYGDIESK 115
                      455677789***********9996554...467888888887665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00017      0.16       4      26 ..      80     102 ..      77     105 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                 EEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   4 ilqGeaGsGKTtLlqklalawae 26 
                  l Ge+G GKT+ ++ +a+a+ +
  EGE27720.1  80 NLYGEPGTGKTMSAHAIAHALGK 102
                 689****************9976 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00026      0.24      35      57 ..      78     100 ..      72     181 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
      AAA_25  35 lallaGapgtGKttlaldlalav 57 
                 ++ l+G pgtGKt+ a  +a+a+
  EGE27720.1  78 IINLYGEPGTGKTMSAHAIAHAL 100
                 678************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2284.40
//
Query:       EGE27721.1  [L=296]
Description: DeoR-like transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-27   97.1   0.0      2e-27   96.3   0.0    1.4  1  WYL         WYL domain
    5.4e-09   35.7   0.7    1.7e-08   34.1   0.2    2.1  2  HTH_DeoR    DeoR-like helix-turn-helix domain
    0.00015   21.6   0.0      0.002   18.0   0.0    2.7  2  HTH_11      HTH domain
     0.0053   16.4   0.0      0.014   15.1   0.0    1.6  1  GntR        Bacterial regulatory proteins, gntR family
     0.0079   16.2   0.3         15    5.7   0.0    3.7  4  HTH_Mga     M protein trans-acting positive regulator (MGA) H
  ------ inclusion threshold ------
      0.091   12.5   0.4          2    8.2   0.0    2.9  3  PheRS_DBD1  PheRS DNA binding domain 1


Domain annotation for each model (and alignments):
>> WYL  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   6.7e-31     2e-27       2     171 ..     124     289 ..     123     290 .. 0.94

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 6.7e-31
         WYL   2 vletlaeAieerrrvefrYrspagegeertvePyglvlkngrwYLvaydekrdeirtfrldRiselelldetfeppdfdlakylsksfgvfks..pvev 98 
                 +++ ++ Ai e++ ++++Y++     ++r v+Py+l  ++g wYL++   +++ei+tfrl++i +l +l+ +   pd+++ +++ + +g+  +   ++v
  EGE27721.1 124 IIPLIKSAIAEQQIIRLDYKN-----QTRLVHPYKLLNHRGCWYLIG--TQNNEIKTFRLSKILNLSVLQGQSFVPDDEIWQLIDQGQGIWFGhqLTNV 215
                 577899***************.....69*******************..99*******************99889999999999988888777779999 PP

         WYL  99 kvrfspeaarrvrerrf.pdqkieeedddgsvrvelpvesleellswllsfgdeveVlePaeLreevkeeaerl 171
                  ++ ++ a+ ++ ++++ p+qki ++ +dg + +++ v   +++ + ++s+ ++++++ePae r+ +  ++++ 
  EGE27721.1 216 LIKTDEYARGYFLQKQIlPNQKIIKSLEDGGLLIQCSVYQKQQIFPMIRSWIPHLTIIEPAEWRDYLNHQLKKY 289
                 9**********9988777*************************************************9999986 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.2   5.6e-12   1.7e-08       1      46 [.      11      56 ..      11      57 .. 0.88
   2 ?   -2.6   0.0       1.6   4.7e+03      38      51 ..     148     161 ..     146     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 5.6e-12
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltR 46
                R + i + l ++ kl + el+++++vS++TiRRDL  +e   +l+R
  EGE27721.1 11 RFADIFMRLSSHEKLDTHELAAEYQVSDKTIRRDLLRMERYLPLVR 56
                667899*****************************98887666655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.6
    HTH_DeoR  38 LeeqglltRthGGa 51 
                 L+++++l  ++G+ 
  EGE27721.1 148 LVHPYKLLNHRGCW 161
                 88999999999996 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   6.8e-07     0.002       4      43 ..      14      52 ..      11      62 .. 0.82
   2 ?   -0.5   0.0       0.4   1.2e+03      10      28 ..     164     183 ..     161     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6.8e-07
      HTH_11  4 qilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                +i  +L ++++++   eLA e  vS +t+rrd+ ++e  +
  EGE27721.1 14 DIFMRL-SSHEKLDTHELAAEYQVSDKTIRRDLLRMERYL 52
                566777.77778*********************9888776 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.4
      HTH_11  10 leargp.isgeeLAeeLnvS 28 
                 + ++++ i   +L++ Ln+S
  EGE27721.1 164 IGTQNNeIKTFRLSKILNLS 183
                 556677799999******99 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.6e-06     0.014      17      50 ..      18      50 ..      14      59 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.6e-06
                SS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHH CS
        GntR 17 elrpGdkLPsereLaaefgVsrttvReALrrLea 50
                +l+ ++kL    eLaae+ Vs  t+R+ L r e+
  EGE27721.1 18 RLSSHEKL-DTHELAAEYQVSDKTIRRDLLRMER 50
                68899***.*****************98888776 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0049        15      19      41 ..      23      45 ..      19      53 .. 0.85
   2 ?   -0.9   0.0      0.58   1.7e+03      20      36 ..      59      75 ..      54      81 .. 0.76
   3 ?   -2.7   0.0       2.2   6.5e+03       2      13 ..     102     113 ..     102     118 .. 0.76
   4 !    5.7   0.0     0.005        15      15      36 ..     166     186 ..     163     191 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0049
     HTH_Mga 19 ksltldelakeLglseltlqsdi 41
                + l ++ela e+  s +t++ d+
  EGE27721.1 23 EKLDTHELAAEYQVSDKTIRRDL 45
                567889**************998 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.58
     HTH_Mga 20 sltldelakeLglselt 36
                 + + + +k+ +lse++
  EGE27721.1 59 KMVYLDKSKQFNLSEKE 75
                56666778999999986 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.2
     HTH_Mga   2 kdikrklkLlel 13 
                 k+ +r+l+++ +
  EGE27721.1 102 KQNTRQLQIVGY 113
                 788999999855 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.005
     HTH_Mga  15 teneksltldelakeLglselt 36 
                 t+ ++++++  l+k L+ls l+
  EGE27721.1 166 TQ-NNEIKTFRLSKILNLSVLQ 186
                 56.99**************986 PP

>> PheRS_DBD1  PheRS DNA binding domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00067         2       9      31 ..      15      37 ..      11      41 .. 0.87
   2 ?    0.3   0.0      0.21   6.1e+02      15      30 ..     167     182 ..     164     183 .. 0.88
   3 ?   -1.4   0.0      0.68     2e+03      39      49 ..     239     249 ..     236     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00067
  PheRS_DBD1  9 lLqrLekkgevdslelAaelgvd 31
                +  rL++++++d+ elAae +v+
  EGE27721.1 15 IFMRLSSHEKLDTHELAAEYQVS 37
                6679***************9986 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.21
  PheRS_DBD1  15 kkgevdslelAaelgv 30 
                 +++e++++ l++ l++
  EGE27721.1 167 QNNEIKTFRLSKILNL 182
                 5899********9987 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.68
  PheRS_DBD1  39 vKSLqalgelI 49 
                 +KSL+  g lI
  EGE27721.1 239 IKSLEDGGLLI 249
                 89999776566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2494.56
//
Query:       EGE27722.1  [L=85]
Description: XRE family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-05   22.9   0.6    9.5e-05   22.7   0.6    1.1  1  HTH_31    Helix-turn-helix domain
     0.0006   19.8   0.0    0.00086   19.3   0.0    1.3  1  HTH_3     Helix-turn-helix
     0.0061   16.3   0.0      0.011   15.5   0.0    1.4  1  HTH_38    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   14.9   0.3       0.18   11.7   0.3    2.0  2  HTH_25    Helix-turn-helix domain
      0.025   15.0   0.1      0.033   14.6   0.1    1.1  1  DUF2664   Protein of unknown function (DUF2664)
      0.051   13.6   0.0      0.075   13.1   0.0    1.2  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.6   3.2e-08   9.5e-05       4      59 ..      15      69 ..      12      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.2e-08
      HTH_31  4 alLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                a L+a R+ + Ls +++A+r     s + r+E G r r       ++++alg  p+
  EGE27722.1 15 AWLKAERRNQKLSMRALAARMDRPHSFVQRVEEGDR-RLDVVEYIWYCEALGINPS 69
                569999******************************.8**************8775 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.9e-07   0.00086       1      52 [.      17      68 ..      17      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.9e-07
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsl 52
                lk+ R  ++ls++ LA++++ + s ++r E G+r+ ++   + +++aLg+ +
  EGE27722.1 17 LKAERRNQKLSMRALAARMDRPHSFVQRVEEGDRRLDVVEYIWYCEALGINP 68
                7999******************************999887777777777765 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.6e-06     0.011      16      39 ..      21      44 ..      19      45 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.6e-06
      HTH_38 16 llaeGlslreIArrLgrspsTIsR 39
                 ++++ls+r+ A r++r +s ++R
  EGE27722.1 21 RRNQKLSMRALAARMDRPHSFVQR 44
                689*****************8887 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   5.9e-05      0.18       2      34 ..      17      49 ..      16      52 .. 0.95
   2 ?    1.0   0.0      0.13     4e+02      51      59 ..      60      68 ..      59      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.9e-05
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEedd 34
                L+a+R+ ++ls++++a++   + + +++ Ee+d
  EGE27722.1 17 LKAERRNQKLSMRALAARMDRPHSFVQRVEEGD 49
                9*****************************998 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.13
                HHHHTT--H CS
      HTH_25 51 YArlLgldp 59
                Y+++Lg++p
  EGE27722.1 60 YCEALGINP 68
                9******98 PP

>> DUF2664  Protein of unknown function (DUF2664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.1e-05     0.033      27      72 ..       8      53 ..       3      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
     DUF2664 27 qalivarviikedtaesqrvisslaafLdkqkaalrvelkalkqLe 72
                 ++i++r   k + ++++  +++laa +d+ +++++   +  ++L+
  EGE27722.1  8 DQMIALRAWLKAERRNQKLSMRALAARMDRPHSFVQRVEEGDRRLD 53
                57*********************************98777777665 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.5e-05     0.075       4      59 ..      17      71 ..      16      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyl 59
                Lk+ R++ +l++++la r +   s+    E g +  ++  ++  ++ealgi++   
  EGE27722.1 17 LKAERRNQKLSMRALAARMDRPHSFVQRVEEGDR-RLDVVEYIWYCEALGINPSLG 71
                677799***********99999***********9.*****************9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 738.76
//
Query:       EGE27723.1  [L=136]
Description: translation elongation factor Tu, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-48  164.1   1.0      3e-48  164.0   1.0    1.0  1  GTP_EFTU   Elongation factor Tu GTP binding domain
    1.4e-05   25.1   0.0    1.8e-05   24.8   0.0    1.1  1  MMR_HSR1   50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.084   12.6   0.0        1.7    8.4   0.0    2.1  2  PduV-EutP  Ethanolamine utilisation - propanediol utilisation


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   1.0     5e-52     3e-48       1     130 [.      10     136 .]      10     136 .] 0.94

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 5e-52
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEE CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavl 99 
                 k+++n+g+ighvDhGKtTLt ++ + + + +  ge a++ +++D+++eE++rgiTi++++i+++  t+ ++++++D+PGH+d++k++i+g++++Dga+l
  EGE27723.1  10 KPHVNVGTIGHVDHGKTTLTAAIATVAAKHHG-GE-AKDYAAIDSAPEEKARGITINTSHIEYD--TAARHYAHVDCPGHADYVKNMITGAAQMDGAIL 104
                 579*********************99999777.44.334578**********************..********************************* PP

                 EEETTTBSTHHHHHHHHHHHHTTTE.EEEEEE CS
    GTP_EFTU 100 vvdaveGvepqteevlrlalkegvp.iivfiN 130
                 vv+a++G++pqt+e++ l +++gvp i+vf+N
  EGE27723.1 105 VVSATDGPMPQTREHILLSRQVGVPyIMVFMN 136
                 *************************9999998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0     3e-09   1.8e-05       2     112 ..      15     134 ..      14     136 .] 0.76

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3e-09
                 EEEEESTTSSHHHHHHHHHT................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvd 84 
                 v+ +G+   GK+tL  a+                  + a  ++  g T+++ ++++++  +++  vD+pG  +       +++ +    ++d ++lvv+
  EGE27723.1  15 VGTIGHVDHGKTTLTAAIATvaakhhggeakdyaaiDSAPEEKARGITINTSHIEYDTAARHYAHVDCPGHAD------YVKNMITGAAQMDGAILVVS 107
                 899***************9555556666666665433677788889999999999998889*********333......566777777789*******9 PP

                 TTTTCSHHHHHHHHHHHHHTTSEEEEEE CS
    MMR_HSR1  85 aseeklkpldeeleelleeakkplilvl 112
                 a+ ++  p+ +e   l ++ + p+i+v+
  EGE27723.1 108 AT-DGPMPQTREHILLSRQVGVPYIMVF 134
                 88.5566666666666666778887775 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00029       1.7       6      26 ..      17      37 ..      13      55 .. 0.81
   2 ?    2.5   0.0     0.018   1.1e+02      39      75 ..      78     110 ..      61     128 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00029
   PduV-EutP  6 liGkvgsGKttLtqalkgeel 26
                 iG+v+ GKttLt a+   + 
  EGE27723.1 17 TIGHVDHGKTTLTAAIATVAA 37
                59************9987655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.018
   PduV-EutP  39 eviDtPGeylenrklysalivtsaeadvialvqdate 75 
                 + +D+PG    +  + + +i+ +a+ d   lv++at+
  EGE27723.1  78 AHVDCPG----HADYVKNMITGAAQMDGAILVVSATD 110
                 5689999....45677777888888887777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1201.40
//
Query:       EGE27724.1  [L=89]
Description: lactoferrin binding protein B LbpB, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-17   63.4   3.8      3e-17   63.3   3.8    1.0  1  TbpB_B_D  C-lobe and N-lobe beta barrels of Tf-binding protei


Domain annotation for each model (and alignments):
>> TbpB_B_D  C-lobe and N-lobe beta barrels of Tf-binding protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   3.8   1.7e-21     3e-17      66     136 .]       3      86 ..       1      86 [. 0.96

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 1.7e-21
                 -SEEEE.EEEETTEEEEEEEETTT-TTSSTT-S.....-S-CEEEEEEEESTTT-EEEEEE........E-TTCEEEEEEEEEE CS
    TbpB_B_D  66 kkvdie.akIkgnrFtgkakakdkkkekkenss.....kkkdakveGgFYGpnAeELgGkf.......sesedkklggvFgAkk 136
                 ++++i  ++I+g+ Ft+ka+ +d+++e  +nss     ++kd++v+G+F+G+n+eEL+G++       ++++++k+g+vFgA k
  EGE27724.1   3 SVFNIRdGEINGTAFTAKADVSDYRHEIGNNSSggflyNIKDIDVKGQFFGTNGEELAGQLqydkgdgITDTAEKAGAVFGAVK 86 
                 5689988*************************9***************************999****9999***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 755.49
//
Query:       EGE27725.1  [L=1000]
Description: lactoferrin binding protein A LbpA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-38  134.1   7.7    1.3e-38  134.1   7.7    2.3  2  TonB_dep_Rec  TonB dependent receptor
    1.3e-15   57.9   4.6    3.3e-15   56.6   4.6    1.7  1  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.7     0.081   7.2e+02      31     106 ..     214     296 ..     183     386 .. 0.42
   2 !  134.1   7.7   1.5e-42   1.3e-38      19     470 .]     426     999 ..     410     999 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.081
                   EEEEEEEEEEEEEEEECCC...EECCCEEECECCEEEEEEEEEEEEEEEEE..EEEEE....EEEEEEEEEEEEEEEEEEEEEEE CS
  TonB_dep_Rec  31 gsalsrgylgtnplyygdn...ysetdnkrlrlgydydlddnlswklslra..glnYs....stdgdsdynnsglgggrsynrdn 106
                   g++  ++y++ n+  ++++    ++t++ +++++y+y  ++ ++  ++l+   +  Y+    +++ d + +n +++ g+sy +++
    EGE27725.1 214 GAQSKTTYNSKND-HFSQTlaaAGKTERVEAMVQYTYRKGKENKAHSDLNGinQSLYRlgawQQKYDLRKPNELFA-GTSYITES 296
                   3333333333333.33333334444445555555555532222222222212233333222111112222222222.23333333 PP

  == domain 2  score: 134.1 bits;  conditional E-value: 1.5e-42
                   EEEEEEETTTTEEEEEEEEEEEEEE...EEECCC.EECCCEEECECCEEEEEEEEEEE..EEEEEE.EEEEEEEEEEEEEEEEEEEE.......... CS
  TonB_dep_Rec  19 gdylrytdggdlgsalsrgylgtnp...lyygdn.ysetdnkrlrlgydydlddnlsw..klslra.glnYsstdgdsdynnsglgg.......... 98 
                    dy+ y +++d ++al r   ++ p   l+y ++  ++++   +r+g+ +++  ++ w  + +l++ + n +  ++d +   s ++           
    EGE27725.1 426 DDYQEYLNANDASQALFRPGANDAPipkLAYARSsVFNQEHGKTRYGLSFEFKPDTPWfkQAKLNLhQQNIQIINHDIKKSCSQYPKvdlncgisei 522
                   5677888888888777774444444455344444477777777778888888888899775555545566666666666666655557788899996 PP

                   .....EEEEEEEECEEEEEEEEEEEEEE..EEEEE..................................EEEEEEEEEEEEEEEEEECCBEESCCTC CS
  TonB_dep_Rec  99 .....grsynrdndyyglgnvlaaeldl..ngdlw..................................fGsnladgldyrklsddgydaydplnps 154
                        +++y++++ + +l+++l++++dl  ++dl+                                  +                           
    EGE27725.1 523 ghyeyQNNYRYKEGRASLTGKLDFNFDLlgQHDLTvlagadkvksqfrannprrtiidttqgdaiidesT--------------------------L 593
                   6666666666666666699999999999987776577555555555555555555555553333333330..........................1 PP

                   ...................................CSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSSS...EEECCCEEEEEEEEE CS
  TonB_dep_Rec 155 ...................................gdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvfgkdlragafsrsgsafsPsvgl 216
                                                      + + +   +++y +   + ++ +d ++l+ G+R d  +  ++d +    s+++++ s+++g+
    EGE27725.1 594 taqeqakfkqsgaawivknrlgrleekdacgnaneCERAPIHGSNQY-VGINNLYTPNDYVDLSFGGRLDKQRIHSTDSNI--ISKTYTNKSYNFGA 687
                   44444444444444444444444444444444444488888899999.89999999999*******************999..99999********* PP

                   EEECETTEEEEEEEEEEEE-STTCTTCEEEE......CCCCCEEEECSTT---EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEESSSSCSTTT CS
  TonB_dep_Rec 217 ryrptddlslrasysrgfraPslgelyaggs......ngaggalsngnpdLkPEtsknyelGlkldddrlnltlayFridiknfittdpdgpslggl 307
                   + ++t+d+sl  + ++gfr Ps++ely+++s      n   ++++  + d kPEts++ e+G+++++ ++++ ++ F +++k++++    + +  + 
    EGE27725.1 688 AVHLTPDFSLLYKTAKGFRTPSFYELYNYNStaaqhkNDPDVSFPKRAVDVKPETSNTNEYGFRYQHPWGDIEMSMFKSRYKDMLDKAIPNLTKAQQ 784
                   ********9955*****************9998886644444444446779************************************9877666666 PP

                   CS.....................EEEEEEEEEEEEEEEEEEEEE.......EETTEEEEEEE.....EEEEEEEECEC.EEECTTTTSSTTEESEEE CS
  TonB_dep_Rec 308 gd.....................fqyqNvgkarikGvElelsyr.......ltpgWglglsg.....ggytYydagdd.sdaddggnplpnvPkhta 370
                    +                      +++N  +a+ikGv + ++ +       l +g+  +l++     g+++Y   +d+ +  +     ++ + + ++
    EGE27725.1 785 EYckahldsnecvgnpptpktsdEVFANLYNATIKGVSVKGKLDlhamtskLPDGLEMTLGYghtklGKFDYIAPKDAdGWYQARPAFWDAITPARY 881
                   669************99999999777888777*******5544455544444444332222211111445564443332333444445888****** PP

                   EEEEEEECSEEEEEEEE..........SEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEESSSEEEEEEEESTTETCSCEEESTT...... CS
  TonB_dep_Rec 371 nlgltYkfpaggWgagl..........llagarYvavggrrygdaantfrrvpgYtlldlslgYklpknltlslgvnNLfdkryyassgyy...... 451
                   ++gl+Y++p+  Wg g             ++a  +++g+r   + + t    ++Ytlld++  Y +++ +t +lg+nN++++ry++    +      
    EGE27725.1 882 VVGLNYDHPSQVWGIGTtlthskqkdeNELSALRIRNGKRETQTLTHT--IPKAYTLLDMTGYYSPTESITARLGINNVLNTRYTT----Weaarql 972
                   ******889999**3333444444442223333366677444444444..778***********999**************54333....2334577 PP

                   ........TTTCCEB--SEEEEEEEEE CS
  TonB_dep_Rec 452 ........glggypgpgRtfrlglryk 470
                           ++ +y +pgR+++++l++k
    EGE27725.1 973 pseaasstQSTRYIAPGRSYFASLEMK 999
                   899999999**************9875 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   4.6   3.7e-19   3.3e-15      10     107 ..      89     194 ..      82     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 3.7e-19
                 EEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESC.........CCCSCTCGCSSBGGGEEEEEEEESSCHCT CS
        Plug  10 svvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpian.........ggsgagdlssidpedierievlkGpasal 99 
                 +v ta+ + k +++ + d++++  gv+v +++g+gg+s++ i+G++ nrv+++vDG+ + +          g+g+g ++ i++e+i  + + kG+++  
  EGE27725.1  89 TVKTADTLAKEQVQGIRDLVRYETGVSV-VEQGRGGSSGFAIHGVDKNRVGITVDGIAQIQsykdestkrAGAGSGAMNEIEIENIAAVAINKGGNALE 186
                 7889************************.****************************99999*******9999************************** PP

                 TSSTGSSE CS
        Plug 100 yGsdaigG 107
                  Gs+a+gG
  EGE27725.1 187 AGSGALGG 194
                 *******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1000 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 7218.64
//
Query:       EGE27726.1  [L=541]
Description: hypothetical protein EA1_01094 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-83  278.9   2.2    6.3e-83  278.5   2.2    1.1  1  DUF560    Protein of unknown function (DUF560)
  ------ inclusion threshold ------
       0.25   11.9   2.2       0.58   10.7   0.3    2.5  3  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF560  Protein of unknown function (DUF560)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.5   2.2     7e-87   6.3e-83       4     286 .]     255     541 .]     253     541 .] 0.98

  Alignments for each domain:
  == domain 1  score: 278.5 bits;  conditional E-value: 7e-87
      DUF560   4 svgasylkdkNinnasdkktvnfeksenikaskpekakGlsyslgaskkwnlkknhylelranvsGklYwdnkkyndlsvraslglgyknakqdvsllp 102
                 ++g++yl+ +Nin+as+ ++       nik+++p+ a+Gl++slg++k+++l++++ ++++++v+Gk+Y d+k++n+l+v a++gl+ +++k +v++ p
  EGE27726.1 255 DLGINYLHLDNINAASTITQP------NIKKDAPKPAHGLALSLGVNKYTPLSHGMSIYTALDVDGKFY-DDKSHNELAVFAHAGLRKDHQKGYVDVVP 346
                 789******************......999***************************************.***************************** PP

      DUF560 103 Fvekrfygnkryskas......Gvrlslsywlsekwqlstsleyekeryter.krldgnqklvsasllylpnakqyfflGldfsredarekadsydrkg 194
                 Fv + f++n+++ + s      Gv++ +++++++kwq+++++++ek +yter + +dg++++v++++l +++++++++lG++++ ++++++++s+++++
  EGE27726.1 347 FVGRIFATNQQHGRLSprkdsqGVAFGSHHRINDKWQNAFFARMEKGNYTERyQGYDGKRYHVNDTILLQDGPNRRYSLGVGYQLSHLQDATKSSHATK 445
                 *******888777777777777***************************************************************************** PP

      DUF560 195 vrigwgqewekglstrlslsyakrdYkgkalll...lnikrkdkeysvslslwhrdlhllGitPkLtysykktkSNlp.fysydkkevfvefektF 286
                 +++g++q++++gl+++ ++s+++++Y+gk l l   ++++r+dk+ ++++s+wh+d+h+lG+tPkLty+y+k++SNlp +ys++k+++++e+ ++F
  EGE27726.1 446 IHFGVLQRLPNGLTVQGRVSAERERYHGKLLRLvnpDDVYRTDKTLTLQTSIWHKDIHWLGLTPKLTYRYSKNNSNLPaLYSHNKQNFYLELGRSF 541
                 *********************************9************************************************************99 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1         2   1.8e+04      49      58 ..     152     161 ..     151     168 .. 0.69
   2 ?   10.7   0.3   6.5e-05      0.58       1      54 [.     172     225 ..     172     228 .. 0.94
   3 ?   -0.7   0.0      0.24   2.2e+03      29      49 ..     254     274 ..     245     288 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2
      TPR_19  49 dalpeedpdd 58 
                 d+lp++++dd
  EGE27726.1 152 DRLPDDYQDD 161
                 6788888884 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.5e-05
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 +l +g+   Al+ll+ +  ++p   +++l+LA +ll +++ + A+ +Ld+l ++
  EGE27726.1 172 ALSDGNTKLALNLLTDLSNKEPTLTAVKLQLASLLLTNKHDKHAQMVLDELKDD 225
                 57899999*****************************************99876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.24
      TPR_19  29 llLAeallalgqldeAealLd 49 
                 l+L + +l l ++++A  + +
  EGE27726.1 254 LDLGINYLHLDNINAASTITQ 274
                 789999**********98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3902.45
//
Query:       EGE27727.1  [L=60]
Description: hypothetical protein EA1_01099 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.004   15.9   0.0     0.0043   15.8   0.0    1.0  1  T7SS_ESX1_EccB  Type VII secretion system ESX-1, transport TM


Domain annotation for each model (and alignments):
>> T7SS_ESX1_EccB  Type VII secretion system ESX-1, transport TM domain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.4e-07    0.0043      32      69 ..       8      44 ..       2      53 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.4e-07
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  T7SS_ESX1_EccB 32 ddplrsqsrallvGvvlavvvlagaavlallkPqgkvg 69
                    ++pl+++ +a l+G+vl +v++ag+a+ a l+P+g+  
      EGE27727.1  8 NNPLKESLTA-LIGTVLLLVMIAGIAISAWLRPAGEHP 44
                    5676666665.68*********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 474.92
//
Query:       EGE27728.1  [L=598]
Description: M24 metallopeptidase family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-43  148.0   0.0    5.1e-43  146.9   0.0    1.6  1  Creatinase_N_2   Creatinase/Prolidase N-terminal domain
    1.3e-42  145.8   0.1      2e-42  145.3   0.1    1.3  1  Peptidase_M24    Metallopeptidase family M24
    3.9e-21   74.9   0.2    1.1e-20   73.4   0.2    1.8  1  Peptidase_M24_C  C-terminal region of peptidase_M24
    2.2e-19   70.4   0.0    2.6e-13   50.8   0.0    2.5  2  Creatinase_N     Creatinase/Prolidase N-terminal domain
  ------ inclusion threshold ------
      0.094   12.5   0.1       0.41   10.4   0.1    2.1  1  DUF2510          Protein of unknown function (DUF2510)


Domain annotation for each model (and alignments):
>> Creatinase_N_2  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0   1.4e-46   5.1e-43       1     160 [.     153     308 ..     153     309 .. 0.95

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 1.4e-46
                     T---------EE--HHHHSS-HHHHHHHHHHHHHHTT-SEEEE-SHHHHHHHTTEE--SBTTB----EEEEEES.S-EEEEE-GGG-..-HHHHH CS
  Creatinase_N_2   1 drParpkepvfvlpeeyaGesvaeKlerlrkelkkkkadalvlsaldeiAWllNlRGsDipynPvflsyaivtkdekatLFvdeeklteevkehl 95 
                     drP++p + ++++p e+   +vaeKl+++r+++++k+ad++++s+ld+iAWllNlRGsD+++nPvfls+++++ d+katLFvd +kl++++++ l
      EGE27728.1 153 DRPQLPDAAIYEHPAEFVDTTVAEKLAQVRAQIQQKQADVHLISSLDDIAWLLNLRGSDVEFNPVFLSHLLLD-DTKATLFVDINKLDDKIRTSL 246
                     79**********************************************************************6.67******************* PP

                     HHTTEEEE-GGGHHHHHHHHHHHH----EEE-TTSBHHHHHHH-.GGGEEE-S-HHHHHHHC--HH CS
  Creatinase_N_2  96 eengveikpyeevvsdlkalasaskkkvlldpsktsyalasalk.ekkvveeespiallKavKNev 160
                     e+ gv++ +y+++ + +++++     k+l+dps++ +   ++l+ + +++++ +p +++Ka+K e+
      EGE27728.1 247 ESMGVQVAEYQAIGDAIAQVS----GKLLIDPSRIAIGTLKQLSsSVELIRAMNPSTIIKAIKSEA 308
                     ***************999996....79*********9999999658888999***********986 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.1   5.6e-46     2e-42       1     207 [.     311     528 ..     311     530 .. 0.89

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 5.6e-46
                    HHHHHHHHHHHHHHHHHHHHHH......TTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB...--TTEEEEEEEEEEETT CS
  Peptidase_M24   1 elirkaariasaaleavleaik......pgvterelaaeieattlkrhgarglafppivasgenaavlhytpndrv...lkegdlvlidagaeydg 87 
                    e+ir+a+r + aal +++++++      + +te ++++++ +++ k++++  ++f++i+++ +n+a++hy+++++    ++ + l+lid+ga+y +
     EGE27728.1 311 EHIREAMRQDGAALCEFFAEFEaktslgERITELDIDRMLIEARSKQKHYVSPSFDTIAGFQANGAIVHYSASEDNysvIEGDGLLLIDSGAQYYN 406
                    579**************98866223333578**********9999*************************8855555569**************** PP

                    EEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-ST.TSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEES..SSSSEEEEEESS...STTCSSB CS
  Peptidase_M24  88 yasDitrTvlvGkftpeqrelyeavleaqeaaikavkp.GvtlseidaaarevlesaglakffphglGHgvG..levhdegpsvsr...esndgrk 177
                     ++Ditr+ +vG+ ++++++ ++ vl+a+  + +a +p G   s++da ar +l+++gl  ++ hg+GHgvG  ++vh++ p+v +    +  +r+
     EGE27728.1 407 GTTDITRMASVGQVSDDEKRDVTYVLKAHIGLAQAQFPeGLASSQVDALARIHLWRQGL--DYNHGTGHGVGyfMNVHEG-PQVISvfaPTTPERV 499
                    ************99999999*********8888888999********************..88*********988***98.**887776333699* PP

                    --TTBEEEEEEEEEEETTTEEEEEBEEEEE CS
  Peptidase_M24 178 leeGmvftiEpgiyfapgeggvriedtvlv 207
                    l+ Gmv t+Epg+y + ++ g+r+e+  ++
     EGE27728.1 500 LKRGMVTTNEPGLYREGQW-GIRLENCAVC 528
                    **************77777.*****98775 PP

>> Peptidase_M24_C  C-terminal region of peptidase_M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.2   3.1e-24   1.1e-20       2      63 .]     539     598 .]     538     598 .] 0.97

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 3.1e-24
                      EEEEEES------STT--GGGS-HHHHHHHHHHHHHHHHHHHHHHHHT-H.HHHHHHHT--- CS
  Peptidase_M24_C   2 fleFetlTlvPidrklIdvslLtpeEiawLnaYhakvreklsplLeeeneeleWLkraTrpl 63 
                      fl+F+ lTl+P+d++lI +slLt++E+ wLn+Yh++v ++l ++++++  +++WL + T+++
       EGE27728.1 539 FLKFDDLTLCPFDTRLILPSLLTEDEKSWLNHYHQRVHDELIDRVSGA--AKDWLIERTKAI 598
                      9********************************************999..89*******987 PP

>> Creatinase_N  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   7.1e-17   2.6e-13       1     121 [.      11     140 ..      11     150 .. 0.88
   2 !   17.3   0.0   1.6e-06    0.0057       2     114 ..     178     289 ..     177     316 .. 0.74

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 7.1e-17
                   HHHHHHHHHHHTT-SEEEEECC............HHHHHHHSS...-SSSEEEEEEESSCEEEEEECTTHHHHHHHH.TTSEEEEEST...HSSHHH CS
  Creatinase_N   1 Rlerlralmeekgldallvtsp............enlrYltGfatetgsrglalvvtadgalllvdalryteaaeesatveevveydd...pveala 82 
                   R+  +r++++++g+dal+++s             + + +++Gf   tgs g+++ vt+  a l++d +ry+ +a  +   +  +e+++    +++++
    EGE27728.1  11 RIGLARQILADEGVDALIIPSAdphmseylpkywQGRAWVSGF---TGSVGTLV-VTQTFAGLWTD-SRYWVQAPIQ-LAGTGIEFQKmqiGQPTFT 101
                   677789*************************************...********.9999999****.**********.5555555555556689*** PP

                   HHHHHHHHHT-EEEE-TTSSBHHHHHHHHHHCTTSEEEE CS
  Creatinase_N  83 dllkellesekrvgveldaltvafyealkealpdaelvd 121
                   ++l+++l+++++v+++ ++l+v+++++lk a+ d+ +  
    EGE27728.1 102 QYLADTLPAGSKVAIDGNVLSVNEHDNLKTAFLDKDIQL 140
                   *******************************95554433 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.6e-06
                   HHHHHHHHHHTT-SEEEEECCHHHHHHHSS.......-SSSEEEEEEESSCEEEEEECTTHHHHHHHH.TTSEE.EEESTHSSHHHHHHHHHHHHT- CS
  Creatinase_N   2 lerlralmeekgldallvtspenlrYltGfa....tetgsrglalvvtadgalllvdalryteaaeesatveev.veyddpvealadllkellesek 93 
                   l+++ra +++k++d+ l++s +++ +l + +    ++    +  l++   +a+l+vd  +    + ++ ++e++ v++++ ++a+ d++++    ++
    EGE27728.1 178 LAQVRAQIQQKQADVHLISSLDDIAWLLNLRgsdvEFNPVFLSHLLLDDTKATLFVD-INKLDDKIRT-SLESMgVQVAE-YQAIGDAIAQV---SG 268
                   7899**************************88655222222222323555559****.9999999998.78888777887.88888888888...58 PP

                   EEEE-TTSSBHHHHHHHHHHC CS
  Creatinase_N  94 rvgveldaltvafyealkeal 114
                   ++ ++++ +  +++++l + +
    EGE27728.1 269 KLLIDPSRIAIGTLKQLSSSV 289
                   999999999999999998877 PP

>> DUF2510  Protein of unknown function (DUF2510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00012      0.41       5      24 ..      32      51 ..      32      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
     DUF2510  5 pDPsgtpgllRyWDGarWTe 24
                +DP+ + +l  yW G++W+ 
  EGE27728.1 32 ADPHMSEYLPKYWQGRAWVS 51
                6*****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4497.08
//
Query:       EGE27729.1  [L=459]
Description: anthranilate synthase component I/chorismate-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-85  285.8   0.0    4.5e-85  285.3   0.0    1.2  1  Chorismate_bind  chorismate binding enzyme
  ------ inclusion threshold ------
      0.026   14.7   0.0       0.35   11.1   0.0    2.6  3  Anth_synt_I_N    Anthranilate synthase component I, N termina


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.3   0.0     5e-89   4.5e-85       2     258 .]     193     447 ..     192     447 .. 0.96

  Alignments for each domain:
  == domain 1  score: 285.3 bits;  conditional E-value: 5e-89
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETT...SEEEEECEEEEE CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkvegg...rrietepiaGTr 92 
                      + +Ya+a+ +++e+++agd+y+++l++++ a+l++    ++++ +l+ + +ap++++l+l+++ell++SPEl++++ ++    ++ t+pi+GTr
       EGE27729.1 193 KTEYAKAFYQTQEYLKAGDTYQINLTQKWYAHLDR---LANHLPDLQDTMNAPFAGFLQLGEFELLSISPELFFEFYKTngkIHLITKPIKGTR 283
                      679*****************************764...589*********************************865444448999******** PP

                      EHSSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEES CS
  Chorismate_bind  93 argktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaP 186
                      +r+++p  d +l+++l+++eK+++E+lmivdl+rndLgk+a++g+vk+p+ f++e++++v+h+vst++++l+ d++++ +l   +P+g++tGaP
       EGE27729.1 284 PRHTDPIIDDELKQSLANSEKDISENLMIVDLLRNDLGKYAQIGTVKTPKRFAIESFKNVHHMVSTVTATLS-DTHPITVLFGSLPAGSITGAP 376
                      ***********************************************************************7.8******************** PP

                      HHHHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 187 kkrameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      kkra+eii+elE+++Rg+Y+G++gy+++dg + ++v+IRt++  ++ ++++aG+GI+++S+ ++Ey+E+++K
       EGE27729.1 377 KKRACEIIHELETSPRGAYCGTMGYMNFDGTGSWNVLIRTLQKWQE-CEIWAGGGITIKSNVDDEYQECQDK 447
                      ******************************************9988.**********************998 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.9e-05      0.35      84     110 ..      99     128 ..      32     145 .. 0.61
   2 ?   -0.9   0.0       0.2   1.8e+03      46      80 ..     267     326 ..     248     337 .. 0.54
   3 ?   -0.9   0.0      0.19   1.7e+03      87     103 ..     390     407 ..     376     423 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.9e-05
  Anth_synt_I_N  84 e.ptelpfvgGlvGylgYDl.vreie.klp 110
                    +  ++ + v G++G+++YDl  +++  ++ 
     EGE27729.1  99 HgLNHSSYVHGFMGFISYDLsAHQLNhRIT 128
                    245677899***********6666664444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.2
  Anth_synt_I_N  46 skngeveveg.......................pegeeleeee..pldalrellerfrsa 80 
                      ng++ +++                       +++e+  +e+  ++d+lr+ l ++ ++
     EGE27729.1 267 KTNGKIHLITkpikgtrprhtdpiiddelkqslANSEKDISENlmIVDLLRNDLGKYAQI 326
                    555555555555555555555555555555554333333333356888888888888754 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.19
  Anth_synt_I_N  87 elp.fvgGlvGylgYDlv 103
                    +++  ++G +Gy+ +D +
     EGE27729.1 390 SPRgAYCGTMGYMNFDGT 407
                    444578999***999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3622.52
//
Query:       EGE27730.1  [L=410]
Description: 3-oxoacyl-ACP synthase I FabB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-38  132.0   7.1    4.5e-38  131.3   7.1    1.4  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    1.3e-33  115.5   0.6    1.3e-33  115.5   0.6    1.9  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    0.00013   21.5   1.5     0.0002   20.8   0.9    1.5  1  Thiolase_N       Thiolase, N-terminal domain
     0.0065   16.9   0.0      0.013   15.9   0.0    1.6  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   7.1     1e-41   4.5e-38       1     253 []       1     247 [.       1     247 [. 0.85

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 1e-41
                    X--EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHH CS
  ketoacyl-synt   1 aepvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaa 96 
                    +++v+i+G g++ + gnd++++ e+L +gr++i+ +++ ++   +    ++ +ag i+         dd+d +    + +  + m+ ++ ++   a
     EGE27730.1   1 MKRVVITGAGIVSCLGNDLDTVKEALENGRSGIR-FKQ-EYADLG---FKSCVAGSIDH--------DDLDTTGIDRKLK--RFMSNASLYAYISA 81 
                    589*******************************.663.223333...36777777777........7888765444444..6************* PP

                    HHHHHHHTS-HHTC.TTGGEEEEEEESSTHH....HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHH.HHHHHHHH CS
  ketoacyl-synt  97 wealedagltpeel.dgsrvgvfiGvgagdy....aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSs.lvavhaav 186
                      a+++agl+ +++ d++rv v++++g +++    aa +a++e+g  + +   av++++a+ +++ ++  l+++G s+++++AC++s ++++ha+ 
     EGE27730.1  82 LSAIKNAGLSIDTIaDNPRVSVVAASGGASTadvvAAADAMREKG-LRGVGAMAVPKIMASSVSAALATGLKIKGLSYSLSSACATSsHCVGHAM- 175
                    ************9978888********998855554445555555.67777789999******************************88888888. PP

                    HHHHTTS-SEEEEEEEE---SHHHHHHHHHTT.BB-TT..SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 187 qslrsgeadvalaGGvellltpeavagfsaag.llspd..grckafdpka...dGfvlGEGvGavvLkrleda 253
                    + ++ g+ad++laGG e + ++ + ++f+a+g +++++   ++ a++p++   dGfv++ G G+vv+++le a
     EGE27730.1 176 ELIQLGKADIVLAGGGE-SEHWTQSCMFDAMGaMSTQYsdTPQSASRPYDkdrDGFVIAGGGGMVVVESLESA 247
                    *****************.99************777777988888888888888****************9976 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.76   3.4e+03      91     109 ..     107     125 ..     102     128 .. 0.76
   2 !  115.5   0.6   2.9e-37   1.3e-33       1     117 [.     255     365 ..     255     366 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.76
                      GGGHHHHHHHHHHHHHHHT CS
  Ketoacyl-synt_C  91 eaAaGvaelikvvlalkhg 109
                       ++a +a++++++ a++++
       EGE27730.1 107 SGGASTADVVAAADAMREK 125
                      5677888888888888875 PP

  == domain 2  score: 115.5 bits;  conditional E-value: 2.9e-37
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      +a+i+g++++sdga   + ap+ge++ r+++ ala+ag++  +vdy++ hgt+tplgD +El+a+++vfg  +  q+ +++S+Ks++GH+++A 
       EGE27730.1 255 LAEITGYGATSDGA--EMVAPSGEGAVRCMQIALAQAGLA--SVDYINSHGTSTPLGDITELNAIATVFGGAK--QTPPISSTKSMTGHSLGAV 342
                      69*********997..567788******************..*****************************98..7899*************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G+ eli ++l+++h+ i+pt+n+
       EGE27730.1 343 GTQELIYCLLMMNHEFIAPTINI 365
                      *********************98 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.9   4.4e-08    0.0002      65     114 ..     144     193 ..     137     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.4e-08
                 HHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEE CS
  Thiolase_N  65 qaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEs 114
                  aal++g+  +  +  +  +c+ + + v +a++ i+ g+ad+v+agG+Es
  EGE27730.1 144 SAALATGLKIKGLSYSLSSACATSSHCVGHAMELIQLGKADIVLAGGGES 193
                 689999**99**************************************97 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.9e-06     0.013      12      46 ..     374     408 ..     361     410 .] 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.9e-06
  KAsynt_C_assoc  12 rlkVvteptpwpggivgvNsfGfGGsnvHviLksn 46 
                      + +vt++ +   + +  NsfGfGG+n+ +++++ 
      EGE27730.1 374 DFDIVTQTRQTALNSIMSNSFGFGGTNAALVIQKF 408
                     578899999999999999************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3280.26
//
Query:       EGE27731.1  [L=709]
Description: hypothetical protein EA1_01119 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-10   41.2   1.3    1.4e-10   41.2   1.3    4.7  3  EcsC            EcsC protein family
    7.1e-09   35.8  73.2    3.4e-07   30.3  32.1    3.8  3  Apolipoprotein  Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
      0.011   16.2  83.0        1.9    9.1  11.6    9.1  4  YtxH            YtxH-like protein
      0.012   15.9  15.7      0.012   15.9  15.7    7.3  6  Alanine_zipper  Alanine-zipper, major outer membrane lipoprot
          9    7.0  74.5       0.26   11.9   7.6    7.8  8  DUF883          Bacterial protein of unknown function (DUF883
        9.4    6.2  22.5        2.8    7.9   2.4    5.6  3  ApoO            Apolipoprotein O


Domain annotation for each model (and alignments):
>> EcsC  EcsC protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   7.4       0.2   5.9e+02      16      88 ..     100     198 ..      81     225 .. 0.46
   2 ?   -4.2  11.6       3.7   1.1e+04      11     106 ..     210     309 ..     201     398 .. 0.81
   3 !   41.2   1.3   4.8e-14   1.4e-10      29     240 ..     460     682 ..     438     683 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.2
        EcsC  16 k.easfleklskklqeklnaliP................ekvqekitkaieealeavleggeylvekkenk.........esiedlaelsLeqldelaa 88 
                 +  +++le ++++ q+k++++ +                ++  e++++a+ + +e++  ++++l+++ ++           ++e+++e+ L+q+d l++
  EGE27731.1 100 DkATEKLEVAKEATQDKVEKTQSlvedikdkaqslqedaADTVEALKQAASDKVETTKAEAQSLKDDATQTfesakqaveGKVEAIKEQVLDQVDSLKD 198
                 335555666666666666655555544444443333344222333333333334444444444444444335444445554444444445555554444 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 3.7
        EcsC  11 ekklek..easfleklskklqekln..aliPekvqekitkaieealeavleggeylvekkenkesiedlael......sLeqldelaaklakkrklaaa 99 
                 ek+++k   +++ +++++k+++ ++  + + e ++++ +  i+e+ +a+++++e ++++ ++k +      +      +L+q  ++aa+ a +   aa+
  EGE27731.1 210 EKQTLKdkAVQAATAAKRKVEDVVDdvKHTTESFKNTASGKIDEIKQAAVDKTEEVKSQLSQKAD------AlkssgeELKQTAQTAANDAITEAQAAV 302
                 55555557788888888888888884445788888888888888866666665555555555533......3344455999999999999999999999 PP

        EcsC 100 aeGagtG 106
                 ++G +  
  EGE27731.1 303 VSGSVAA 309
                 9988765 PP

  == domain 3  score: 41.2 bits;  conditional E-value: 4.8e-14
        EcsC  29 qeklnaliPekvqekitkaieealeavleggeylvekkenkesiedlaelsLeqldelaaklakkrklaaaaeGagtGagGlllllaDiPlllglklkv 127
                 ++  ++++P+   e+i++++++ +    +   + +++ +n  +   ++ ++ +++ + a+++a++++++a++ G++ G+ Gl  +laD   ll+++l++
  EGE27731.1 460 KNVAAKVVPQSKFEAIGESLYNKVAEWSNA--WAIKDLKNDPRFDLINTMNTQERHAFAEDVANQNRALATL-GGVAGLAGLKGVLADAAWLLMVSLRT 555
                 555666777777777777777775555555..5555555556777778889999999999*********988.8899********************** PP

        EcsC 128 lqeiAliYGydlkekeerlfiLkvlqlasa.ddeerkalleelskadeeseqeqv.............esqesgwleelikeiakelrdqvdkkkllql 212
                 ++++A+iY   l+ ke    +  vl+ a   + +e++++l +l+  ++  +++q+               ++++  ++++        d++    l ++
  EGE27731.1 556 VYQVAAIYDQPLTGKEGTKKAYGVLSGANLeKLQEKQVILTALALGSSMLANAQQtgikaqldslsarYRESQPYAKQFLDLDKFVNLDNLNPNWLHKI 654
                 *************************9999989999999999999888877774445888888999987566666645554444444458999999**** PP

        EcsC 213 iPviGavvGalaNysfikdvaeaAkmly 240
                 +P+  ++vGa  N+++i++v  +A++++
  EGE27731.1 655 LPISAVAVGAHYNNELIDEVIGTAMATF 682
                 *************************998 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  17.9     0.032        94      80     181 ..      10     131 ..       1     133 [. 0.73
   2 !   30.3  32.1   1.1e-10   3.4e-07       2     183 ..     127     300 ..     126     302 .. 0.93
   3 !   13.1  14.6   2.2e-05     0.066      68     184 ..     280     387 ..     276     393 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.032
                     HHHHHHHHHCHHCCHHCHCCHCHH.....................HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SS CS
  Apolipoprotein  80 eelrerlaadaeelqeqlavyaee.....................lrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerls 153
                     ++ + +++ +++el + +a+y +                        ++++++ + + +  +++ e ++++++++++e ke ++++a+ ++++++
      EGE27731.1  10 KQTQHSHDDQVKELAQEVAEYDDVeivaevdidnqavsdvliirdTDTKADQA-DHTDDASKADDETVVDGVKQKAQEAKEDFENKAQDLQDKAT 103
                     34444444555555555555555577777777777777777755555555555.88889999999999999999999999999999999999999 PP

                     SHHHHHHHTS-TTSHHHHHS--XXXXXX CS
  Apolipoprotein 154 srveelrekleeqaeelrerleanleel 181
                     +++e ++e+  +++e+ +  +e ++++ 
      EGE27731.1 104 EKLEVAKEATQDKVEKTQSLVEDIKDKA 131
                     9999999999999999988888877765 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 1.1e-10
                     HHHCCCCHHHHHCCHHHCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHC CS
  Apolipoprotein   2 leesldelkayaeeleeqlaplaqelrdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeq 96 
                     +++++++l++ a+++ e l+++a + +++  +e+++l++  ++  e++++++e ++++++eq+ ++++ l+ +        +++ + d ++ +++
      EGE27731.1 127 IKDKAQSLQEDAADTVEALKQAASDKVETTKAEAQSLKDDATQTFESAKQAVEGKVEAIKEQVLDQVDSLKDD--------TDQDNTDQDQEKQT 213
                     7899********************************************************************9........44446699****** PP

                     HCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHTS-TTSHHHHHS--XXXXXXXX CS
  Apolipoprotein  97 lavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrekleeqaeelrerleanleelka 183
                     l+ +a ++ + ++r+ve++ + ++  +e++++    +++e+k+ + +++eev+++ls+++++l+ + ee  +  +  ++ ++ e +a
      EGE27731.1 214 LKDKAVQAATAAKRKVEDVVDDVKHTTESFKNTASGKIDEIKQAAVDKTEEVKSQLSQKADALKSSGEELKQTAQTAANDAITEAQA 300
                     ****************************************************************99999777777777777776665 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 2.2e-05
                     HHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..-----SSSHHHHHHHT CS
  Apolipoprotein  68 leelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerleelkeslaphaeeveerlssrveelrek 162
                      eel+q+ ++++++        + e+q ++ + +  + +++++ +++ k++l  ++e++++ l+e+++el+e++ +  e++  ++s+ v+ + + 
      EGE27731.1 280 GEELKQTAQTAANDA-------ITEAQAAVVSGSVAAADSAQSTAQSAKDKLNQLFEQGKSALDEKVQELGEKFGAT-EKIN-AVSENVDLATQV 365
                     444444444444444.......777888888888889************************************9876.5555.889999999999 PP

                     S-TTSHHHHHS--XXXXXXXXX CS
  Apolipoprotein 163 leeqaeelrerleanleelkaq 184
                      +e+a++l+ ++++ l+  ka 
      EGE27731.1 366 IKEEAQALQTNAQESLQAAKAA 387
                     9999999999999999999986 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.0      0.66     2e+03      42      65 ..       6      29 ..       1      40 [. 0.54
   2 ?   -8.4  33.3         6   1.8e+04      23      74 ..      84     138 ..      51     201 .. 0.80
   3 ?    9.1  11.6   0.00063       1.9      22      72 ..     228     278 ..     206     279 .. 0.76
   4 ?   -6.4  20.7         6   1.8e+04      24      68 ..     263     325 ..     260     406 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.66
        YtxH 42 kelleeakekakekaedlkekvke 65
                +++++++++   +++++l+++v+e
  EGE27731.1  6 QKTTKQTQHSHDDQVKELAQEVAE 29
                333333333335555555555554 PP

  == domain 2  score: -8.4 bits;  conditional E-value: 6
        YtxH  23 GketRkdlkekaddlkekakelleeakeka...kekaedlkekvkekadelkekv 74 
                   e ++d  +ka+dl++ka+e le ake +   +ek++ l+e++k+ka++l+e++
  EGE27731.1  84 AQEAKEDFENKAQDLQDKATEKLEVAKEATqdkVEKTQSLVEDIKDKAQSLQEDA 138
                 5677788888888888888888888888887775666666666666666666653 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00063
        YtxH  22 sGketRkdlkekaddlkekakelleeakekakekaedlkekvkekadelke 72 
                 + +++ +d+k++++ +k+ a   ++e+k+ a++k+e++k+++++kad lk+
  EGE27731.1 228 KVEDVVDDVKHTTESFKNTASGKIDEIKQAAVDKTEEVKSQLSQKADALKS 278
                 444555677777777777777777777777799999999999999999886 PP

  == domain 4  score: -6.4 bits;  conditional E-value: 6
        YtxH  24 ketRkdlkekaddlkekakelleeakeka..................kekaedlkekvkekad 68 
                 +e++ +l++kad+lk + +el+++a+  a                  +++a+  ++++k+k +
  EGE27731.1 263 EEVKSQLSQKADALKSSGEELKQTAQTAAndaiteaqaavvsgsvaaADSAQSTAQSAKDKLN 325
                 566677777777777777666555555556666666666655555553333333333333333 PP

>> Alanine_zipper  Alanine-zipper, major outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4  12.6       2.2   6.5e+03       5      59 ..      54     109 ..      52     114 .. 0.71
   2 ?    2.4   7.4     0.069     2e+02       7      41 ..     114     148 ..     108     151 .. 0.49
   3 ?  -11.2  20.9         6   1.8e+04       4      41 ..     147     184 ..     144     238 .. 0.71
   4 ?   15.9  15.7   4.2e-06     0.012      11      65 ..     267     330 ..     257     333 .. 0.73
   5 ?    2.9   5.3     0.048   1.4e+02      10      36 ..     363     389 ..     351     397 .. 0.78
   6 ?   -3.9   0.1         6   1.8e+04       2      16 ..     609     623 ..     607     629 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.2
  Alanine_zipper   5 elqakadqaeq..daaaaksa..adeAkskAdeAaarAenAeaaAeeAqkaAeeanera 59 
                     ++++kadqa    da++a+ +   d  k+kA+eA++   + e++A++ q +A+e+ e a
      EGE27731.1  54 DTDTKADQADHtdDASKADDEtvVDGVKQKAQEAKE---DFENKAQDLQDKATEKLEVA 109
                     788999999751155555544334778999999998...66789999999999987755 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.069
  Alanine_zipper   7 qakadqaeqdaaaaksaadeAkskAdeAaarAenA 41 
                     q k+++ ++ ++++k +a++ ++ A++  +  ++A
      EGE27731.1 114 QDKVEKTQSLVEDIKDKAQSLQEDAADTVEALKQA 148
                     55555555555555555555555555444422222 PP

  == domain 3  score: -11.2 bits;  conditional E-value: 6
  Alanine_zipper   4 eelqakadqaeqdaaaaksaadeAkskAdeAaarAenA 41 
                     +++  k++  +++a+++k +a++  ++A++A +   +A
      EGE27731.1 147 QAASDKVETTKAEAQSLKDDATQTFESAKQAVEGKVEA 184
                     66778899999999999999999999999998755555 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 4.2e-06
  Alanine_zipper  11 dqaeqdaaaaksaade....AkskAdeAaarAenA.....eaaAeeAqkaAeeaneradrmFek 65 
                      q++q+a+a+ks+ +e    A+++A++A + A++A      aaA++Aq +A+ a+++++++Fe+
      EGE27731.1 267 SQLSQKADALKSSGEElkqtAQTAANDAITEAQAAvvsgsVAAADSAQSTAQSAKDKLNQLFEQ 330
                     5778888888888766111144455666666777799999**********************96 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.048
  Alanine_zipper  10 adqaeqdaaaaksaadeAkskAdeAaa 36 
                      + ++++a+a++ +a+e  ++A++A +
      EGE27731.1 363 TQVIKEEAQALQTNAQESLQAAKAAGE 389
                     455788999999999999999999976 PP

  == domain 6  score: -3.9 bits;  conditional E-value: 6
  Alanine_zipper   2 qveelqakadqaeqd 16 
                     q++ ++a++d++++ 
      EGE27731.1 609 QQTGIKAQLDSLSAR 623
                     666677777777765 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.6      0.38   1.1e+03      41      68 ..       3      30 ..       1      39 [. 0.73
   2 ?    6.0   8.1     0.006        18      12      70 ..      60     118 ..      51     122 .. 0.74
   3 ?   11.9   7.6   8.8e-05      0.26       7      69 ..     120     182 ..     117     185 .. 0.91
   4 ?    6.2   5.4    0.0053        16       8      62 ..     187     244 ..     180     252 .. 0.76
   5 ?   10.2   8.4   0.00029      0.86       6      71 ..     228     293 ..     225     310 .. 0.76
   6 ?    5.0   0.6     0.012        36      21      57 ..     309     345 ..     306     360 .. 0.81
   7 ?    4.0   1.5     0.026        78      27      68 ..     350     391 ..     343     401 .. 0.61
   8 ?   -2.3   0.1       2.3     7e+03      70      90 ..     522     542 ..     507     544 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.38
      DUF883 41 erarerlrdaeeavaerakeaaeaaddy 68
                +++++++++++++  +++ke a+++ +y
  EGE27731.1  3 KSTQKTTKQTQHSHDDQVKELAQEVAEY 30
                5667777778888888888887777666 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.006
      DUF883  12 adleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVr 70 
                 +++++  ++++++ +  ++ ++++++e+ e+  ++++d+++++ e+ + a ea++d V+
  EGE27731.1  60 DQADHTDDASKADDETVVDGVKQKAQEAKEDFENKAQDLQDKATEKLEVAKEATQDKVE 118
                 55555555666666777788888888888888888888888888888888888888876 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 8.8e-05
      DUF883   7 leslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyV 69 
                 ++sl++d+++ +++ +++a++++e+l++ +++++e+++++++ +++++ +  ++a +a++  V
  EGE27731.1 120 TQSLVEDIKDKAQSLQEDAADTVEALKQAASDKVETTKAEAQSLKDDATQTFESAKQAVEGKV 182
                 68999999999*************************************999999988887655 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0053
      DUF883   8 eslladleellkeaad...eageeaeelRerleerlerarerlrdaeeavaerakeaa 62 
                 e++l+++++l +++ +   + ++e ++l++++ +++++a+ +++d+ ++v++ +++  
  EGE27731.1 187 EQVLDQVDSLKDDTDQdntDQDQEKQTLKDKAVQAATAAKRKVEDVVDDVKHTTESFK 244
                 7888888888877765111456778899999999999999999999999998877655 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00029
      DUF883   6 eleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVre 71 
                  +e++++d+++ +++ +++a  +++e+++ + ++ e+++++l++ ++a++ + +e  ++a++++ +
  EGE27731.1 228 KVEDVVDDVKHTTESFKNTASGKIDEIKQAAVDKTEEVKSQLSQKADALKSSGEELKQTAQTAAND 293
                 678888888888888999999999999999999999999999988888888887777777666544 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.012
      DUF883  21 aadeageeaeelRerleerlerarerlrdaeeavaer 57 
                 aad+a+++a++++++l++ +e+ +++l++  +++ e+
  EGE27731.1 309 AADSAQSTAQSAKDKLNQLFEQGKSALDEKVQELGEK 345
                 7889999999999999999999999998887776655 PP

  == domain 7  score: 4.0 bits;  conditional E-value: 0.026
      DUF883  27 eeaeelRerleerlerarerlrdaeeavaerakeaaeaaddy 68 
                 e+++++ e+++ + +  +e++++++ +++e+ ++a +a ++y
  EGE27731.1 350 EKINAVSENVDLATQVIKEEAQALQTNAQESLQAAKAAGEEY 391
                 555556666666666666666666666666666665555555 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 2.3
      DUF883  70 renPwqavGiAagvGlllGlL 90 
                 +++ ++++G +ag++ l G+L
  EGE27731.1 522 QNRALATLGGVAGLAGLKGVL 542
                 345778899999988888887 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.25   7.4e+02      38      63 ..      77     102 ..      67     107 .. 0.74
   2 ?    7.9   2.4   0.00095       2.8      11      62 ..      97     148 ..      78     154 .. 0.78
   3 ?   -6.2  12.7         6   1.8e+04      33      63 ..     170     200 ..     148     386 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.25
        ApoO  38 lnkvkskvetaeqsvtdtiasLkepp 63 
                 ++ vk+k+++a++ ++++ + L+++ 
  EGE27731.1  77 VDGVKQKAQEAKEDFENKAQDLQDKA 102
                 57788888888888888888888865 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00095
        ApoO  11 eptdrLeegvrslRkslepytsavqdelnkvkskvetaeqsvtdtiasLkep 62 
                   +d+  e+ + + ++++++++++q+ ++++k+k++++++   dt++ Lk++
  EGE27731.1  97 DLQDKATEKLEVAKEATQDKVEKTQSLVEDIKDKAQSLQEDAADTVEALKQA 148
                 4556667778888899999999999999999999999999999999999886 PP

  == domain 3  score: -6.2 bits;  conditional E-value: 6
        ApoO  33 avqdelnkvkskvetaeqsvtdtiasLkepp 63 
                 +++++ + v+ kve  +++v d+++sLk++ 
  EGE27731.1 170 TFESAKQAVEGKVEAIKEQVLDQVDSLKDDT 200
                 4444444444444444444444444444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3178  (0.177255); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        55  (0.00306766); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.67u 0.33s 00:00:02.00 Elapsed: 00:00:00.55
# Mc/sec: 3876.81
//
Query:       EGE27732.1  [L=124]
Description: 30S ribosomal protein S12 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-42  142.8   0.8    3.5e-42  142.6   0.8    1.0  1  Ribosom_S12_S23  Ribosomal protein S12/S23
  ------ inclusion threshold ------
       0.12   13.1   0.0       0.29   11.9   0.0    1.6  1  Ribosomal_S12    Ribosomal protein S12


Domain annotation for each model (and alignments):
>> Ribosom_S12_S23  Ribosomal protein S12/S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.8   3.9e-46   3.5e-42       2     114 .]      13     123 ..      12     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 3.9e-46
                      -------S-TSSTTSSEEEEEEEEEEEE---TT--S-EEEEEEEET.TSEEEEEEE-SSS..----TT-EEEEEE--.....BTTSTTEEEEBE CS
  Ribosom_S12_S23   2 kelrkktksdalegapqkrGvvlekvtveakkPnsAlRkvvrvrLikngkevtafipgegalnfldEhdevlvrGirrkgkavkDlpGvrykvv 95 
                       ++++k+k++al+++pq+rGv+++++t+++kkPnsA+Rkv+rvrL+ +g+ev ++i+geg  ++l+Eh++vl+rG+r     vkDlpGvry++v
       EGE27732.1  13 TTIKEKSKVPALQACPQRRGVCTRVYTTTPKKPNSAMRKVCRVRLT-SGYEVSSYIGGEG--HNLQEHSVVLIRGGR-----VKDLPGVRYHTV 98 
                      567899****************************************.*************..***************.....************ PP

                      T....S---T..SSSTTTTT----T CS
  Ribosom_S12_S23  96 k....vagvs..lkalskykkekpk 114
                      +    +agv+  ++++sky++++pk
       EGE27732.1  99 RgaldCAGVKdrKQGRSKYGAKRPK 123
                      **********999**********97 PP

>> Ribosomal_S12  Ribosomal protein S12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.3e-05      0.29      21      84 ..      36      97 ..      26      99 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
  Ribosomal_S12 21 lvlyvsprlpssGnrrilvaif.llfnivllllvffccvlfvvlsflfiveGGGfidlpglkyfs 84
                    v+  +p+ p s  r+++ + +   +++  ++   +     +   ++ ++ GG   dlpg++y++
     EGE27732.1 36 RVYTTTPKKPNSAMRKVCRVRLtSGYEVSSYIGGEG---HNLQEHSVVLIRGGRVKDLPGVRYHT 97
                   456678999999999988654404455555555444...677788899***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 985.75
//
Query:       EGE27733.1  [L=157]
Description: 30S ribosomal protein S7 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-63  212.2   3.3    2.8e-63  212.0   3.3    1.0  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   3.3   1.6e-67   2.8e-63       1     149 []       1     150 [.       1     150 [. 0.97

  Alignments for each domain:
  == domain 1  score: 212.0 bits;  conditional E-value: 1.6e-67
                   ..XSSSSCT------SSTTSBHHHHHHHHHSBTTBHHHHHHHHHHHHHHHHH.HHSS-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHH CS
  Ribosomal_S7   1 msrrkkakkrevlpdpkynselveklinklmkdGkkslAekivygaldiiee.ktkkdplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRr 96 
                   m+rr+ ++ re+lpdpk++s++++k+in++m dGkks+Aekivygal+ +   k+ +dp+  +ee lenv+P vevk+rrvGGatyqvp+evrp+Rr
    EGE27733.1   1 MPRRRVVAAREILPDPKFGSQTIAKFINHVMVDGKKSVAEKIVYGALEAVVAkKNIQDPVAFFEEVLENVRPTVEVKARRVGGATYQVPMEVRPSRR 97 
                   89*999******************************************8877255779*************************************** PP

                   HHHHHHHHHHHHSTSSSS-HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7  97 qalAlrwiieaarkrkeksmaekLaeElidAaegegaavkkreethrmAeanr 149
                   +alA+rw+++aa+kr+eksma +La El dA+eg+gaa+kkr+++hrmA+an+
    EGE27733.1  98 TALAMRWLADAASKRSEKSMALRLAGELNDASEGKGAAIKKRDDVHRMADANK 150
                   ****************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1200.72
//
Query:       EGE27734.1  [L=708]
Description: elongation factor G [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-65  218.0   0.0    1.3e-64  217.4   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.9e-43  146.5   0.1    5.9e-43  145.5   0.1    1.6  1  EFG_IV       Elongation factor G, domain IV
    1.9e-35  120.8   0.7    3.6e-35  119.9   0.0    1.9  2  EFG_II       Elongation Factor G, domain II
    1.7e-32  111.3   0.1    9.7e-32  108.9   0.1    2.3  2  EFG_C        Elongation factor G C-terminus
    1.3e-17   63.9   0.6    4.6e-17   62.2   0.6    2.0  1  GTP_EFTU_D2  Elongation factor Tu domain 2
      3e-06   27.1   0.0    6.9e-06   25.9   0.0    1.6  1  RF3_C        Class II release factor RF3, C-terminal domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.0   4.2e-68   1.3e-64       2     193 ..       9     287 ..       8     288 .. 0.97

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 4.2e-68
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE.....TTCSSEEEEEEEESSSGGGHHHHHHHHHT-S CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle.....ketkkylinliDtPGHvdFskevirglrvlD 95 
                 r+rnigi +h+D+GKtT+++r+l++tg  +k ge++++++++D++++E+ergiTi+saa++ +     ++ k+++in+iDtPGHvdF+ ev+r++rvlD
  EGE27734.1   9 RYRNIGISAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTAFwsgmgNQFKEHRINVIDTPGHVDFTVEVERSMRVLD 107
                 68***********************************9***************************9877****************************** PP

                 EEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH......................................... CS
    GTP_EFTU  96 gavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk......................................... 153
                 ga++v +av Gv+pq+e+v+r+a+k++vp+  f+NKmDr++a++ ++ve++k++l ++                                         
  EGE27734.1 108 GACMVYCAVGGVQPQSETVWRQANKYKVPRLAFVNKMDRTGANFFRVVEQMKTRLGASpvpivipigseenftgvvdliemksiiwdeasqgmkfeyge 206
                 *******************************************************999***************************************** PP

                 ........................HHHHHHHHHTTT.................TTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 154 ........................eeklekygekge.................kevpvvfgSalkgegvktllealvellp 193
                                         ee ++ky e+ge                 ++ p+++gSa+k++gv+ +l+a++e+lp
  EGE27734.1 207 ipadlvdtaeewrtnmieaaaeasEELMDKYLEEGElskedivaglrirtlasEIQPMLCGSAFKNKGVQRMLDAVIEFLP 287
                 *************9999999999988888888888899999999999*****99************************998 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.1     2e-46   5.9e-43       1     121 []     486     607 ..     486     607 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 2e-46
                 TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTT..TTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--T CS
      EFG_IV   1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePle..egsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhe 97 
                 pqVayrEtir+ v+ +e+k+++q+gg+g++++v+l++ePl+   + ++ef +e++gg+vpkey+ av+kG+qe +k+G++ag+pv+++k+tL+dgs+h+
  EGE27734.1 486 PQVAYRETIRQSVE-VEGKFVRQTGGRGKFGHVWLRLEPLDptGDVEYEFNEEIVGGVVPKEYHAAVDKGIQERMKNGVIAGYPVVGIKATLYDGSYHD 583
                 8*************.**************************76667899************************************************** PP

                 TTC-HHHHHHHHCHHHHHHHHCC- CS
      EFG_IV  98 vdsseaafkpaarralkeallkAs 121
                 vds e+ fk+a+++a+k+++l+A+
  EGE27734.1 584 VDSDELSFKMAGSMAFKKGFLQAN 607
                 *********************995 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       4.8   1.4e+04      10      32 ..     223     247 ..     221     248 .. 0.72
   2 !  119.9   0.0   1.2e-38   3.6e-35       1      74 [.     411     484 ..     411     485 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.8
      EFG_II  10 iepkskadedklskaLar..lleED 32 
                 ie++ +a e+ ++k L++  l++ED
  EGE27734.1 223 IEAAAEASEELMDKYLEEgeLSKED 247
                 8888889999999998742256666 PP

  == domain 2  score: 119.9 bits;  conditional E-value: 1.2e-38
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelg 74 
                 fPePvisla+epk+kad++k+s aL rl++EDp++rv++dee+++ti+sGmGelHl+i+v+r+kre++ve+++g
  EGE27734.1 411 FPEPVISLAVEPKTKADQEKMSVALGRLAKEDPSFRVRTDEESGQTIISGMGELHLDIIVDRMKREFNVEANIG 484
                 8**********************************************************************987 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   3.6e+03      52      76 ..     495     519 ..     487     527 .. 0.77
   2 !  108.9   0.1   3.2e-35   9.7e-32       2      88 ..     610     696 ..     609     697 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
                 GG-TTHHHCHHHCTTTS-EEEEEEE CS
       EFG_C  52 aeligfateLrslTkGegsfsmefs 76 
                 +++++ + ++   T G+g f +   
  EGE27734.1 495 RQSVEVEGKFVRQTGGRGKFGHVWL 519
                 6777888899999*****9987655 PP

  == domain 2  score: 108.9 bits;  conditional E-value: 3.2e-35
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdklde 88 
                 llEPi+kve+e+pe+y+g++++dl++rrG +++m+   +g++ i+ae+Plae++g+at++rs+++G++++smef +Y+e+p++++de
  EGE27734.1 610 LLEPIMKVEVETPEDYMGDIMGDLNRRRGMVQGMDDLPGGTKSIRAEVPLAEMFGYATQMRSMSQGRATYSMEFLKYQETPKNVADE 696
                 8**********************************************************************************9987 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.6   1.5e-20   4.6e-17       1      74 []     331     398 ..     331     398 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 1.5e-20
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G ++++rvysG++k Gd v++    + k+   +ri+++  +h++e+ +v++ +aG+i+a++g +d + +Gdtl+
   EGE27734.1 331 GNLTFVRVYSGVVKQGDSVYN--PVKMKR---ERIGRIVQMHANEQKEVEEIRAGDIAALVGMKD-VTTGDTLC 398
                  6789*****************..888888...*********************************.*******8 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   2.3e-09   6.9e-06      15      91 ..     420     496 ..     411     511 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.3e-09
                 EEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE- CS
       RF3_C  15 vrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwves 91 
                 v+ k    + +++ +l  La+E      +++e++ ++i++ +G+L ++++ +R+k+E++ve+++   ++ +   +++
  EGE27734.1 420 VEPKTKADQEKMSVALGRLAKEDPSFRVRTDEESGQTIISGMGELHLDIIVDRMKREFNVEANIGAPQVAYRETIRQ 496
                 67777888889999999*****999999999999****************************998888877777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5382.16
//
Query:       EGE27735.1  [L=135]
Description: translation elongation factor Tu, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-47  161.6   1.1    1.8e-47  161.4   1.1    1.0  1  GTP_EFTU   Elongation factor Tu GTP binding domain
    1.8e-05   24.8   0.0    2.2e-05   24.5   0.0    1.2  1  MMR_HSR1   50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.082   12.7   0.0        1.7    8.4   0.0    2.1  2  PduV-EutP  Ethanolamine utilisation - propanediol utilisation


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   1.1     3e-51   1.8e-47       1     128 [.      10     134 ..      10     135 .] 0.92

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 3e-51
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEE CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavl 99 
                 k+++n+g+ighvDhGKtTLt ++ + + + +  ge a++ +++D+++eE++rgiTi++++i+++  t+ ++++++D+PGH+d++k++i+g++++Dga+l
  EGE27735.1  10 KPHVNVGTIGHVDHGKTTLTAAIATVAAKHHG-GE-AKDYAAIDSAPEEKARGITINTSHIEYD--TAARHYAHVDCPGHADYVKNMITGAAQMDGAIL 104
                 579*********************99999777.44.334578**********************..********************************* PP

                 EEETTTBSTHHHHHHHHHHHHTTTE.EEEE CS
    GTP_EFTU 100 vvdaveGvepqteevlrlalkegvp.iivf 128
                 vv+a++G++pqt+e++ l +++gvp i+vf
  EGE27735.1 105 VVSATDGPMPQTREHILLSRQVGVPyIMVF 134
                 *************************55554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   3.7e-09   2.2e-05       2     112 ..      15     134 ..      14     135 .] 0.75

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 3.7e-09
                 EEEEESTTSSHHHHHHHHHT................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvd 84 
                 v+ +G+   GK+tL  a+                  + a  ++  g T+++ ++++++  +++  vD+pG  +       +++ +    ++d ++lvv+
  EGE27735.1  15 VGTIGHVDHGKTTLTAAIATvaakhhggeakdyaaiDSAPEEKARGITINTSHIEYDTAARHYAHVDCPGHAD------YVKNMITGAAQMDGAILVVS 107
                 899***************9555556666666665433677788889999999999998889*********333......566777777789*******9 PP

                 TTTTCSHHHHHHHHHHHHHTTSEEEEEE CS
    MMR_HSR1  85 aseeklkpldeeleelleeakkplilvl 112
                 a+ ++  p+ +e   l ++ + p+i+v+
  EGE27735.1 108 AT-DGPMPQTREHILLSRQVGVPYIMVF 134
                 88.5465666665555566777777765 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00028       1.7       6      26 ..      17      37 ..      13      55 .. 0.81
   2 ?    2.6   0.0     0.018   1.1e+02      39      75 ..      78     110 ..      61     128 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00028
   PduV-EutP  6 liGkvgsGKttLtqalkgeel 26
                 iG+v+ GKttLt a+   + 
  EGE27735.1 17 TIGHVDHGKTTLTAAIATVAA 37
                59************9987655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.018
   PduV-EutP  39 eviDtPGeylenrklysalivtsaeadvialvqdate 75 
                 + +D+PG    +  + + +i+ +a+ d   lv++at+
  EGE27735.1  78 AHVDCPG----HADYVKNMITGAAQMDGAILVVSATD 110
                 5689999....45677777888888887777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 982.39
//
Query:       EGE27736.1  [L=222]
Description: hypothetical protein EA1_01009 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00017   21.9   0.1    0.00025   21.4   0.1    1.2  1  SPOR      Sporulation related domain
     0.0089   16.1   0.5      0.017   15.1   0.5    1.4  1  TPPK_C    Thiamine pyrophosphokinase C terminal


Domain annotation for each model (and alignments):
>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   2.8e-08   0.00025       4      75 ..     145     215 ..     143     216 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.8e-08
                 BB--BS-EES-HHHHHHHHHHCCHHT--....EEECCSSSCEEEEESSBCTCCHHHHHHHHCHHHHTTS--B- CS
        SPOR   4 gytvQvgafsseanAerlaakLrakgfaaav.avvsgggglyrVrvGpfasreeAqaalkkLkaaagisafvv 75 
                  y++Q+ ++   ++A+  +a++  +g +a v  + +++g +y V+  p  +++eA a   +L+  +gi++ ++
  EGE27736.1 145 QYILQIKSYEKAKDADLKRAEVLMAGVDAIViRQDTKNGYVYQVISTP-MTQKEASATSVRLR-NNGIDSLLI 215
                 69**********************************************.******99999***.689998765 PP

>> TPPK_C  Thiamine pyrophosphokinase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.5   1.9e-06     0.017       8      40 ..      19      53 ..      18      56 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-06
      TPPK_C  8 rsrisggallllvlAaLvA..vavallvspagqsf 40
                ++r+  ++ll++v++ LvA  +av l+vsp ++ f
  EGE27736.1 19 NQRVGLSSLLWIVVGLLVAamLAVFLYVSPLFDGF 53
                79*****************5557788899987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1680.37
//
Query:       EGE27737.1  [L=78]
Description: hypothetical protein EA1_01014 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-19   67.4  10.5    1.2e-18   66.9  10.5    1.3  1  DUF2788   Protein of unknown function (DUF2788)


Domain annotation for each model (and alignments):
>> DUF2788  Protein of unknown function (DUF2788)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9  10.5   6.5e-23   1.2e-18       2      50 ..      24      72 ..      23      73 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 6.5e-23
     DUF2788  2 ltgLilfmgfiiwdlakkskaGkfGtfvlFlvLglGvlGFiaKgiiqlv 50
                l ++i+f++fi+wd++kks+aG+ Gtf++F++Lg+G++GF+aK +i++v
  EGE27737.1 24 LPIFIGFLIFIMWDISKKSDAGRAGTFWIFVALGMGFFGFLAKLVIEFV 72
                789*******************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 618.75
//
Query:       EGE27738.1  [L=95]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.48   10.3   2.9       0.86    9.5   2.9    1.4  1  LPAM_2    Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.9   4.8e-05      0.86       3      15 ..       8      20 ..       6      20 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 4.8e-05
      LPAM_2  3 lllallllLaGCG 15
                +l++ +l+L++CG
  EGE27738.1  8 ALAFVTLMLTACG 20
                7999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 750.85
//
Query:       EGE27739.1  [L=375]
Description: serine-pyruvate aminotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-14   51.6   0.1    9.3e-14   51.1   0.1    1.1  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.015   14.6   0.1      0.018   14.3   0.1    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
      0.043   12.3   0.0      0.068   11.7   0.0    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.1   1.6e-17   9.3e-14      31     338 ..      22     332 ..      14     353 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 1.6e-17
                  SSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTE....EEEEEEBETT CS
  Aminotran_5  31 hrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtga....kvkvipldee 124
                   r++ h++ ++++ +++   +++ l++a+    i+  sGt+ ++++va++l     +++ +v+ +++  + +  w ++ ++ g+    +v ++ l+e+
   EGE27739.1  22 DRALNHMSVQFQQVMKDLSFELKSLFQADA-LAIVPGSGTA-GMEAVARAL----ATDQDAVIIRNGWFSYR--WTQILEAIGVakssHVFKACLQEG 111
                  58999************************6.8888877777.*******99....56777778889999988..888777777633335777666665 PP

                  SCBE.....GGGHHHH--.TTEEEEEEESBETTTTE.B..--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEE CS
  Aminotran_5 125 geld.....ldeleklln.ektklvaithvsnvtGt.i..qpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK.llgPtGiGvly 212
                  ++ +     ++e++++++ +++ +v+  hv++++G+ +  + + +++++++ +g l+++D  +  g i +d+k+lg+D+l +  +K l   +  G+++
   EGE27739.1 112 KNGQfvpadINEVTAYIKeHRPGVVFAPHVETASGMmLsdDYIRALAEAVHLVGGLLVIDCIA-SGCIWLDMKALGIDVLLSAPQKgLSSTPCAGLVM 208
                  443333444899999997699***************5322349999999999********875.589*******************999999****** PP

                  EEHHHHHTS..SS.STTSEEEEET.TEEE.EHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTC CS
  Aminotran_5 213 vrkellekleplllggemveevsl.eett.faeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlkslpgvrlygpdkaerr 308
                   +++++e++    +++  ++ +   +    +++  + ++a T ++ g+  l+ +l   ++ig+++ ++ + +l + +l++l + +   +++p    + 
   EGE27739.1 209 LSQAAKEAVLSSTPSSFSLDLKAWlNIMMaYENGGHAYHA-TMPTDGLKQLRDTLLEAKQIGYDNLKQAQIKLGQEILATLHKKGVHSVADP--SAQA 303
                  *********9999999999988886544436777888998.******************************************999999554..4444 PP

                  BSEEEEEETTCSHHHHHHHHHHTTEEEEEE CS
  Aminotran_5 309 asivsfnfkgvhaedvatlLdeegIavrsG 338
                   +++ +   + +    + + +++g+ + +G
   EGE27739.1 304 YGVIVCHALS-DEIHKGAAFAKAGVQIAAG 332
                  4444443333.3333344445556666666 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   3.1e-06     0.018      32     167 ..      34     171 ..      21     338 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.1e-06
                      HHHHHHHHHHHHHTT-SEEEEES.-HHHHHHHHHHHH--TTEEEEEETT-HHHHSST..THHHHCC--EEEEE-EBTT..TBE-HHHHHHHS-- CS
  Beta_elim_lyase  32 ktvnrLedavaelfgkeaalfvp.qGtaAnsillkillqrgeevivtepahihfdet..gaiaelagvklrdlknkea..Gkmdlekleaaike 120
                      + +++L  +++ lf ++a   vp +Gta+ +   ++l+  +++vi+++    +++++   ai + +++++ ++  +e   G++ +++++++ + 
       EGE27739.1  34 QVMKDLSFELKSLFQADALAIVPgSGTAGMEAVARALATDQDAVIIRNGWFSYRWTQilEAIGVAKSSHVFKACLQEGknGQFVPADINEVTAY 127
                      4556666677779999988888879****99999****9**********999999988889999966666554433333599988888877777 PP

                      S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 121 vgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                          +e  + ++ +  ++ta G ++s +++r++a+ ++  g  l++D
       EGE27739.1 128 I---KEHRPGVVFAPHVETASGMMLSDDYIRALAEAVHLVGGLLVID 171
                      2...35667777788888999*****************999999999 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05     0.068      64     200 ..      46     198 ..      18     231 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
                      HHT-.SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTS..SHHHHHHHHHTHHH.TTCEEEEEST........TSHHHHHHHCCT.TEEEEE.. CS
  Cys_Met_Meta_PP  64 Legg.eaalavssGmaAiaaailallkaGdeivvsddl..Yggtqrllkkvlkk.lgievkfvdt........sdleelekaike.ntklvy.. 142
                      L ++ + a++  sG+a ++a+ +al++  d +++ +    Y+ tq l    + k +++     +         +d++e+ + ike +  +v+  
       EGE27739.1  46 LFQAdALAIVPGSGTAGMEAVARALATDQDAVIIRNGWfsYRWTQILEAIGVAKsSHVFKACLQEgkngqfvpADINEVTAYIKEhRPGVVFap 139
                      5555234666679999999999999999999999887522666776655544441333333333244555555789999999999778888755 PP

                      .EESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT-SEEEEETTTTT CS
  Cys_Met_Meta_PP 143 .lEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplklgaDivvhSaTKyl 200
                       +Et +  +l+   i+++a++++ +g l+v+D   +  +     +lg+D+ + +  K l
       EGE27739.1 140 hVETASGMMLSDDYIRALAEAVHLVGGLLVIDCIASGCIWLDMKALGIDVLLSAPQKGL 198
                      58*********999******************76655577777789****998877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2731.74
//
Query:       EGE27740.1  [L=503]
Description: aminoacyl-histidine dipeptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-15   57.7   0.0    1.7e-15   57.3   0.0    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.6e-07   31.2   0.0      3e-07   30.3   0.0    1.4  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
       0.49    9.4   2.3        4.8    6.1   0.0    2.8  3  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   2.9e-19   1.7e-15       1     206 [.      83     497 ..      83     498 .. 0.86

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 2.9e-19
                    EEEEES-BSS..TTCG.GGSSS.TTSEE...ETTT.EEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHT CS
                    xxxxxxxxxx..xxxx.xxxxx.xxxxx...xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  Peptidase_M20   1 llgsHlDvVp..eeet.dgwtt.pfslt...eedG.klyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.glee 87 
                    +l++HlD+Vp  +e    ++ t p +l+   ++ +  l + G++ +    ++++  l+ l+d+ + +  ++++l++  EE+g+ G   l + + + 
     EGE27740.1  83 ALQAHLDMVPqaNEGVlHDFATdPIRLRlrpDD-NaWLMATGTTLGADNGIGMASCLAVLEDDSLVH-PELEVLLTMTEETGMVGVVGLKAnE-LA 175
                    689*******74444445566688888896333.369**************************9875.4***********7765553333321.11 PP

                    ...................TTCESEEEEEEEESSSBTCHSTETEEEE................................................. CS
                    ...................xxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
  Peptidase_M20  88 ...................rekvdavfelhieepgileagklaigvv................................................. 115
                                       + ++da ++l ++   ++ + +l+ +++                                                 
     EGE27740.1 176 skimvntdteeigevyigcAGGIDADLSLPLMWQKNPFDATLSLTIKglrgghsgldidknrgnaiklmarvlvkllgqfdgqfaishikggtlrn 271
                    234445666667777777766666666444333333333444444449999999999999999999999*************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Peptidase_M20 116 ................................................................................................ 115
                                                                                                                    
     EGE27740.1 272 aipreaqvviscqqsslsalidtindataqifdelkqaepnliaiidttklgpkdnvltwasscqaihlinalpsgvvrqsdiakdtvetslsfgq 367
                    ************************************************************************************************ PP

                    ....................................EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHH.TTTEEEE CS
                    ....................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Peptidase_M20 116 ....................................kvevelleggapvtln.dsplvkalaeaaeelfgekvelivsgpggtdarff.agiptvm 173
                                                         +++++ +++  +  + ds ++ +  + +++++g++++ +v + +g +++ + +  p ++
     EGE27740.1 368 lkmdddvlkcvllirslvdsgkeavcdtlssiahlsGAQITFAGDYVGWNPDtDSVITPITTQLYSQILGHEPDIKVIH-AGLECGLIkQSHPDMD 462
                    ***********************************669999889999*****99999**********99**********.********66669884 PP

                    E..EESSGGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 174 i..fgpgsglaHspnEyvdledlekgikvlarlle 206
                    i  +gp  ++aHsp+E v++ +++ + ++l+++l 
     EGE27740.1 463 IvsIGPTIKNAHSPDEMVHIGSVAVYWRLLTEILA 497
                    44799889********************9999986 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   5.1e-11     3e-07      16      98 ..     225     299 ..     215     311 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 5.1e-11
                 B-EEGG.-TTTTB.-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHH CS
   M20_dimer  16 kagHsg.apgaga.NAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeie 98 
                 ++gHsg   ++ + NAi+++ar+l +l  + +d          ++++++i+gG+ +n+ip+ea++ i++  +  + + + +++ +
  EGE27740.1 225 RGGHSGlDIDKNRgNAIKLMARVLVKLLGQ-FD---------GQFAISHIKGGTLRNAIPREAQVVISCQQSSLSALIDTINDAT 299
                 567777744444326************998.44.........89*************************9655555444444433 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.064   3.9e+02       1      25 [.      64      91 ..      64      93 .. 0.75
   2 ?    1.0   0.2     0.029   1.7e+02     134     176 ..     129     169 ..     120     191 .. 0.69
   3 ?    6.1   0.0   0.00081       4.8     254     287 ..     453     486 ..     443     491 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.064
                   S-EEEEEES...STTSSEEEEEEE--B- CS
  Peptidase_M42  1 Gnliakkkg...kekepkvmiaAHmDei 25
                   Gn+i+kk+     e++  +++ AH+D +
     EGE27740.1 64 GNVIIKKPAtkgYENHEPIALQAHLDMV 91
                   899998754211567778********76 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.029
                    HHHHHHHHHHHHHHHHCTSS-SSEEEEEEESTCTTTSHHHHHH CS
  Peptidase_M42 134 DdragvavllellkelkeeeleatvylvatvqEEvGlrGakts 176
                    D+ +g+a  l++l+  +   ++ ++ ++ t++EE G+ G   +
     EGE27740.1 129 DNGIGMASCLAVLEDDSL--VHPELEVLLTMTEETGMVGVVGL 169
                    777787777777776444..348899999*****999986544 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.00081
                    HHHTSTTTSEEEEEEEEEBSTTSTTEEEEHHHHH CS
  Peptidase_M42 254 aihltgegvptalisiptryiHspvevahlddle 287
                     i  +  ++  + i++ +++ Hsp e++h+ +++
     EGE27740.1 453 LIKQSHPDMDIVSIGPTIKNAHSPDEMVHIGSVA 486
                    566677788999*****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3873.62
//
Query:       EGE27741.1  [L=245]
Description: dienelactone hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-50  169.2   0.9      1e-49  169.0   0.9    1.0  1  DLH              Dienelactone hydrolase family
    1.8e-09   37.4   1.2    0.00032   20.2   0.1    2.1  2  Peptidase_S9     Prolyl oligopeptidase family
    2.6e-08   34.0   0.4    0.00056   19.9   0.0    2.8  2  BAAT_C           BAAT / Acyl-CoA thioester hydrolase C termin
    9.8e-08   31.6   0.7     0.0043   16.4   0.1    2.2  2  Hydrolase_4      Serine aminopeptidase, S33
    2.6e-07   29.6   0.0      4e-07   29.0   0.0    1.3  1  AXE1             Acetyl xylan esterase (AXE1)
    2.9e-05   24.0   0.0      4e-05   23.5   0.0    1.2  1  Abhydrolase_2    Phospholipase/Carboxylesterase
     0.0001   21.3   0.0    0.00018   20.4   0.0    1.4  1  DUF1100          Alpha/beta hydrolase of unknown function (DU
    0.00041   20.3   0.4       0.89    9.4   0.1    2.5  2  Abhydrolase_3    alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.014   14.3   0.0       0.02   13.8   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme
      0.046   13.3   0.1        6.6    6.3   0.0    2.1  2  Abhydrolase_1    alpha/beta hydrolase fold
       0.07   12.7   0.2       0.49    9.9   0.1    2.1  2  Peptidase_S15    X-Pro dipeptidyl-peptidase (S15 family)


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.9   6.4e-53     1e-49       9     215 ..      30     243 ..      20     245 .] 0.95

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 6.4e-53
         DLH   9 knakkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkvgvvGfCm 107
                 k  k+ +++v++e++Gv d+ k ++erla eG+va+a d+Y  ++   +d+++a + ++++ +    ++++++ +a  + +++ pev+++++g+ GfC+
  EGE27741.1  30 KTGKARAILVAPEWWGVADHPKTVAERLAAEGFVAVAMDVYGEGK-MTTDAHQANEWMSQMLEYS--DELMNRCQAIYQDVANLPEVDKERIGIAGFCF 125
                 334899***********************************9999.89*************9998..99****************************** PP

         DLH 108 GGalalllaaevpevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre..........s 196
                 GG++al++a+ +  ++a++ f+G+ +  + +  +k  a +l+ +g eD ++ ++++++l+++l+aa v++++++Y+ga+H+F n++++          +
  EGE27741.1 126 GGKIALDMARLGTPLKAVATFHGNPAAITPATKQKFIAKVLVAHGAEDSMVSMQAIDDLKKELEAADVQYQVDIYDGAKHGFSNPHADerardngidlG 224
                 ************77***********************************************************************99999********* PP

         DLH 197 yneeaaedawervlelfkq 215
                 y+ +aa+++w++++ +++ 
  EGE27741.1 225 YHSQAAKESWAKMIVFMND 243
                 ***************9986 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   3.2e-06    0.0052       7      78 ..      54     130 ..      49     145 .. 0.82
   2 !   20.2   0.1     2e-07   0.00032     133     195 ..     152     214 ..     133     221 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.2e-06
                   HHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHH.....HHHHHHHHHHTTS--GGGEEEEEETHHHHHH CS
  Peptidase_S9   7 lqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdD.....fiaaaealakegyvdserlaitGgSyGGylt 78 
                   ++ la++G+v v++++ G g++  + h+a +      e++D     + a+ + +a+   vd+er++i G  +GG  +
    EGE27741.1  54 AERLAAEGFVAVAMDVYGEGKMTTDAHQANEWMSQMLEYSDelmnrCQAIYQDVANLPEVDKERIGIAGFCFGGKIA 130
                   556899*********************9997666666666643333778888889999****************766 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2e-07
                   HH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHH CS
  Peptidase_S9 133 pyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakv 195
                   +++p+++ k  +++L+ hG +D+ v ++    l ++L+ +++++++ i+ +++Hg+++p a  
    EGE27741.1 152 AITPATKQKFIAKVLVAHGAEDSMVSMQAIDDLKKELEAADVQYQVDIYDGAKHGFSNPHADE 214
                   6778888778899********************************************998765 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.4e-07   0.00056      13      54 ..     107     148 ..     100     162 .. 0.80
   2 !   11.1   0.4   0.00016      0.27     116     210 ..     163     244 ..     149     245 .] 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.4e-07
                 HHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES- CS
      BAAT_C  13 llrhpkvkkdkigllGiSkGgelalllasflkkisavvling 54 
                 + + p+v k++ig+ G ++Gg++al +a   +  +av    g
  EGE27741.1 107 VANLPEVDKERIGIAGFCFGGKIALDMARLGTPLKAVATFHG 148
                 6789************************98887777766555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00016
                 SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH CS
      BAAT_C 116 gpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHliepPyfplceavlaklvgekvlyGGetkahakAqedsWkkilkFlkkh 210
                 +++l++ g +D ++ S + ++++++ L++a  +  +q+ +Y++a H +  P      +            G +  +h++A+++sW+k++ F++ +
  EGE27741.1 163 AKVLVAHGAEDSMV-SMQAIDDLKKELEAADVQ--YQVDIYDGAKHGFSNPHADERAR----------DNGIDLGYHSQAAKESWAKMIVFMNDT 244
                 78999999999887.777888999999999877..888889*****999986544444..........4688999****************9865 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.8e-05      0.03      22      94 ..      52     134 ..      44     155 .. 0.73
   2 !   16.4   0.1   2.6e-06    0.0043     187     234 ..     158     207 ..     150     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
  Hydrolase_4  22 elaeaLaaqGfavyalDhrGhGrse....gkrghvpsfddyvdDlaafvekvkeehpel......plfllGhSmGGliallyl 94 
                   +ae+Laa+Gf  +a+D  G G+       +  +++++ +y d l   ++++ ++  +l      ++ + G   GG ial ++
   EGE27741.1  52 TVAERLAAEGFVAVAMDVYGEGKMTtdahQANEWMSQMLEYSDELMNRCQAIYQDVANLpevdkeRIGIAGFCFGGKIALDMA 134
                  689********************986655444455666666666665555555555555555666777888888888888776 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 2.6e-06
  Hydrolase_4 187 aakitlPllllhGeaDkvvdpeasrelyerlgskdktlk..lypglyHel 234
                  ++k+ + +l+ hG++D  v+++a  +l ++l ++d++++  +y+g+ H  
   EGE27741.1 158 KQKFIAKVLVAHGAEDSMVSMQAIDDLKKELEAADVQYQvdIYDGAKHGF 207
                  5677799***************************77654228******75 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   2.5e-10     4e-07     102     202 ..      56     144 ..       7     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 2.5e-10
                 HHHHHHTT-EEEEEE-TTTS..SSB-SSCCSS-SSSSTTTTTTSTTT-HHH..HHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS- CS
        AXE1 102 llnyaaaGyavvvmdvRGqggesedkvgskgnkakGfiirGlldkeklyyr..rvflDavrlveivaslpevDeeRvavlGasqGGalalavaalekri 198
                     aa+G++ v+mdv G g  ++d +     +a+ ++ + l   ++l+ r   ++ D       va+lpevD+eR++++G   GG +al +a l   +
  EGE27741.1  56 R--LAAEGFVAVAMDVYGEGKMTTDAH-----QANEWMSQMLEYSDELMNRcqAIYQD-------VANLPEVDKERIGIAGFCFGGKIALDMARLGTPL 140
                 4..489**************7776654.....55689999988899998772245544.......789****************************999 PP

                 SEEE CS
        AXE1 199 kavv 202
                 kav+
  EGE27741.1 141 KAVA 144
                 9997 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   2.5e-08     4e-05      92     200 ..     101     206 ..      73     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.5e-08
                    HHHHHHHHTT..--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---T.TGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHT CS
  Abhydrolase_2  92 elidaelkkg..ipssriiigGFSqGaalalylaltlpkklggivafsgalp.lsqklessatavtkklpilqiHgeeDpvvplalgkaakevlkk 184
                    + i +++++   ++++ri i GF  G+ +al     l ++l+ +  f g  + + +++++ ++       +l  Hg eD +v ++    +k+ l++
     EGE27741.1 101 QAIYQDVANLpeVDKERIGIAGFCFGGKIALDM-ARLGTPLKAVATFHGNPAaITPATKQ-KFIA----KVLVAHGAEDSMVSMQAIDDLKKELEA 190
                    456677777789*******************85.56778888888888864403444443.3433....4899*********************** PP

                    TS-GEEEEEETT--SS CS
  Abhydrolase_2 185 llkkvelksyeglaHs 200
                    +  +++ ++y g +H 
     EGE27741.1 191 ADVQYQVDIYDGAKHG 206
                    *99*********9996 PP

>> DUF1100  Alpha/beta hydrolase of unknown function (DUF1100)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.1e-07   0.00018     245     292 ..     100     146 ..      86     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.1e-07
     DUF1100 245 hqavlkeladvpyvdhtrvgliGfrfGanvavrlaflesekvkavval 292
                  qa+ +++a++p vd++r+g+ Gf fG+ +a  +a l ++ +kav+++
  EGE27741.1 100 CQAIYQDVANLPEVDKERIGIAGFCFGGKIALDMARLGTP-LKAVATF 146
                 699****************************999999765.7777764 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00068       1.1      52      90 ..     100     135 ..      75     160 .. 0.77
   2 !    9.4   0.1   0.00054      0.89     164     209 ..     160     207 ..     142     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00068
                    HHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHH CS
  Abhydrolase_3  52 alaalrwlaeqawelgadpsrivlaGdSaGGnlaaaval 90 
                    + a+++ +a+     ++d++ri +aG   GG++a+ +a+
     EGE27741.1 100 CQAIYQDVANL---PEVDKERIGIAGFCFGGKIALDMAR 135
                    44444444444...47*******************9995 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00054
                    ST---EEEEEETT-TTHHHHH..HHHHHHHHTT--EEEEEETTEETTG CS
  Abhydrolase_3 164 sglpptlvvvaefDplrdege..ayaerlraagvevelieyegmvHgf 209
                    + ++++lv+ + +D + + ++  ++ ++l+aa v+ ++  y+g+ Hgf
     EGE27741.1 160 KFIAKVLVAHGAEDSMVSMQAidDLKKELEAADVQYQVDIYDGAKHGF 207
                    4468999999999998876643389**********************9 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.3e-05      0.02      35     141 ..      52     166 ..      45     181 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
  Chlorophyllase2  35 qlLkhiashgfivvapqlyk..vaeadakeiksaakvlnWlakgLes..vlp...........eevepdlsklalsgHSrGgktafalalgkak 113
                      ++ +++a  gf++va  +y           +  a++  +W+++ Le    l            +  e d ++++++g   Ggk+a+++a   + 
       EGE27741.1  52 TVAERLAAEGFVAVAMDVYGegK------MTTDAHQANEWMSQMLEYsdELMnrcqaiyqdvaNLPEVDKERIGIAGFCFGGKIALDMARLGTP 139
                      5778999*********9998432......2334444555555554431122235557775543333557789***************9954443 PP

  Chlorophyllase2 114 tslkfsaligvdPvag.askskqtepkiL 141
                        lk  a+   +P a   +++++  +k+L
       EGE27741.1 140 --LKAVATFHGNPAAItPATKQKFIAKVL 166
                      ..677777777777774333445556666 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0066        11      21      95 ..      53     137 ..      40     164 .. 0.63
   2 ?    6.3   0.0    0.0041       6.6     211     240 ..     162     194 ..     149     207 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0066
                    HHHHHHHTTSEEEEEEETTSTTSSSTTTGB.......CHHSHHHHHHHHH...HH..HHHCTTSSEEEEEETHHHHHHHHHHHHHG CS
  Abhydrolase_1  21 lapaLakdgfdvillDlrGvgySspapacin......ddygtasvaddld...ri..ldalgddkltlvGhSmGGmialayaaeyp 95 
                    +a+ La +gf  +++D+ G g+ ++   + n       +y++  ++++      +  l   + +++ + G+++GG ial +a +  
     EGE27741.1  53 VAERLAAEGFVAVAMDVYGEGKMTTDAHQANewmsqmLEYSDELMNRCQAiyqDVanLPEVDKERIGIAGFCFGGKIALDMARL-G 137
                    5555666677777777777777666666666666666333333333333332322347777888999************99976.4 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0041
                    HSEEEEEEETTCSSSCHHHHHHHHHCHTS...E CS
  Abhydrolase_1 211 laptlvisgtsDplvppkaledlaqllpk...k 240
                    +a++lv +g++D +v+ +a++dl++ l     +
     EGE27741.1 162 IAKVLVAHGAEDSMVSMQAIDDLKKELEAadvQ 194
                    559**********************98886652 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0003      0.49       1     124 [.      14     139 ..      14     154 .. 0.67
   2 ?    0.2   0.0      0.27   4.5e+02     225     248 ..     159     182 ..     147     206 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0003
                    TS-EEEEEEEEE...TTSSSEEEEEEEESS-CCT.CCCCHTTCHHCCHGGGHHHHHTT-EEEEEE-TTSTTS-S---TTTTTHHHHHHHHHHHHHH CS
  Peptidase_S15   1 DGvrLavdiyrP.etkskeklPvlltrtPYgkndelasdkalaleelelqdkvfvarGYavVvqdvrGtggSeGeftvgdsdeaedgadvidWlak 95 
                    DG+ L   i +P +t++ +k+ ++l +  +      ++d+ ++ +e       ++a+G++ V  dv G    eG++t+       d+ ++ +W+ +
     EGE27741.1  14 DGTPLLSHIALPnDTTKTGKARAILVAPEWW----GVADHPKTVAER------LAAEGFVAVAMDVYG----EGKMTT-------DAHQANEWMSQ 88 
                    8888889999999777777777777777666....234444444443......9************99....566666.......44444455555 PP

                    .....................C.TTEEEEEEEEEECHHHHHHHHHCTT--T CS
  Peptidase_S15  96 .....................q.pwsnGkVgmtGiSYlGttqllaaatgvp 124
                                           +  + ++g  G+ ++G ++l +a  g+p
     EGE27741.1  89 mleysdelmnrcqaiyqdvanLpEVDKERIGIAGFCFGGKIALDMARLGTP 139
                    555555566677777777775336667778888888888777777776654 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.27
                    CT--S-EEEEEECCSSTTCCHHHH CS
  Peptidase_S15 225 dkvkapvllvgGwnDwnvkngaik 248
                    +k  a+vl+++G  D +v  +ai+
     EGE27741.1 159 QKFIAKVLVAHGAEDSMVSMQAID 182
                    5667899********888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1723.81
//
Query:       EGE27742.1  [L=154]
Description: hypothetical protein EA1_01039 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-07   31.5   6.2    1.7e-06   28.6   6.7    2.2  2  CxxCxxCC  Putative zinc- or iron-chelating domain


Domain annotation for each model (and alignments):
>> CxxCxxCC  Putative zinc- or iron-chelating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.92   1.6e+04      61      71 ..       6      16 ..       2      24 .. 0.68
   2 !   28.6   6.7   9.7e-11   1.7e-06       2      85 .]      28      97 ..      27      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.92
    CxxCxxCC 61 eRpkicrlfpa 71
                 Rpk+ +++p 
  EGE27742.1  6 LRPKFWENYPL 16
                68988888886 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 9.7e-11
    CxxCxxCC  2 CkeCgaCCkelkvklteedlerl.kaaevaeeeeeskkiakadgrCvfldeetklCkiYeeR....pkicrlfpasekeellaraetCa 85
                C++CgaCC    vk+ ++d  +l ++++v               +C++ld  t+ C++Y++R    p+++rl+p +   ++l+++++Ca
  EGE27742.1 28 CDGCGACCL---VKFLDDDNVKLtEYTDV---------------ACQLLDCSTGFCQNYAKRqtivPDCIRLTPDM-LPDMLWLPRHCA 97
                *********...55554444444144455...............*******************************5.999999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1208.89
//
Query:       EGE27743.1  [L=280]
Description: magnesium and cobalt efflux protein CorC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-15   55.8   1.1      2e-14   53.4   0.0    2.4  3  CorC_HlyC        Transporter associated domain
    1.7e-14   54.0   4.6    7.9e-08   32.6   0.7    2.7  2  CBS              CBS domain
  ------ inclusion threshold ------
      0.034   14.0   0.0       0.12   12.3   0.0    1.8  2  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
       0.11   12.8   0.1       0.42   11.0   0.1    2.1  1  Ish1             Putative stress-responsive nuclear envelope 


Domain annotation for each model (and alignments):
>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5   6.5e+03      10      29 ..      58      77 ..      57      81 .. 0.74
   2 ?    0.2   0.0      0.17   7.4e+02      30      57 ..     160     185 ..     144     193 .. 0.72
   3 !   53.4   0.0   4.4e-18     2e-14       5      78 ..     199     271 ..     196     274 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
                EETT-BHHHHHHHHTSTTHH CS
   CorC_HlyC 10 vdGslpldeleeelglelpe 29
                v++ ++ d+l+++l++ l+ 
  EGE27743.1 58 VHAIASDDDLSDILSVVLET 77
                66677779999999987765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.17
                 CT-SBHHHHHHHHH-S---TT-EEEEEE CS
   CorC_HlyC  30 edyeTlgGlllellgriPkegesvevdl 57 
                 + + T+ +ll e  g+i +e++  ++d 
  EGE27743.1 160 SGVVTMEDLLEEIVGDIVDEHD--DIDE 185
                 4566788888888888888888..6664 PP

  == domain 3  score: 53.4 bits;  conditional E-value: 4.4e-18
                 TTEEEEETT-BHHHHHHHHTSTTHHCT-SBHHHHHHHHH-S---.TT-EEEEEETTEEEEEEEEETTCEEEEEEE CS
   CorC_HlyC   5 egsylvdGslpldeleeelglelpeedyeTlgGlllellgriPk.egesvevdleglrftVlemdgrrIkkvrve 78 
                  g +lv++s+ + + +e+lg ++++ d++T+gGl++++lg +   +g +v++d  ++++tV++++ r I+ +++ 
  EGE27743.1 199 SGVWLVQASTLISDCNEILGSHFDDTDVDTMGGLVMQALGFVSHlQGAVVQID--EWQITVVDVEARFIHLLELV 271
                 699*****************************************99**78888..**************998875 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.7   1.8e-11   7.9e-08       1      55 [.      48     106 ..      48     108 .. 0.89
   2 !   22.2   0.2   3.1e-08   0.00014       4      56 ..     122     173 ..     119     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.8e-11
                 HHHHSBS..SCEEEETTSBHHHHHHHHHHHTSSEEEEE...ETTTBEEEEEEHHHHHHHH CS
         CBS   1 Vgdimtr..dvvtvppdttleealelmrekgvsrlPVV...dedgklvGivtlrDllral 55 
                 V++imt+  +v+ +  d++l+++l    e+++sr+PV    d+d  +vGi+  +Dl+ +l
  EGE27743.1  48 VREIMTPrpQVHAIASDDDLSDILSVVLETEHSRYPVFdslDDDA-VVGILLIKDLIPYL 106
                 899*99944558**************77999*********99888.**********9877 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 3.1e-08
                 HSBSSCEEEETTSBHHHHHHHHHHHT.SS.EEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   4 imtrdvvtvppdttleealelmrekg.vs.rlPVVdedgklvGivtlrDllrall 56 
                 i  r+++++++++    +l+ + +k+ v+ ++ VVde g + G+vt++Dll+ ++
  EGE27743.1 122 IV-RKPLYISETARSDTLLRSL-QKAqVHmAI-VVDEFGSVSGVVTMEDLLEEIV 173
                 54.5566999999999999999.555597455.99****************9986 PP

>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05      0.12      18      53 ..      18      53 ..       6      54 .. 0.94
   2 ?   -2.6   0.0      0.99   4.5e+03      78     103 ..     203     228 ..     199     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                     HHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHT CS
  2Fe-2S_thioredx 18 lLklvQeeegwlpeealeevaellgvppaevyevat 53
                     lLklvQ+ +++l++++++++  +l++p+++v+e++t
       EGE27743.1 18 LLKLVQDSRQFLEPDTVDMLEGVLDLPATQVREIMT 53
                     89*******************************997 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.99
                      TTTHHHHHHHHHHHHT--TT-B-TTS CS
  2Fe-2S_thioredx  78 lrgseeilealekklgikagettadg 103
                      l  + ++++ +++ lg ++++t  d+
       EGE27743.1 203 LVQASTLISDCNEILGSHFDDTDVDT 228
                      56678899999999999999998886 PP

>> Ish1  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   9.4e-05      0.42      23      36 ..      11      24 ..       4      25 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.4e-05
        Ish1 23 aastRdeLlklard 36
                a+ tRd+Llkl++d
  EGE27743.1 11 APETRDDLLKLVQD 24
                688**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2144.36
//
Query:       EGE27744.1  [L=233]
Description: glycine cleavage T protein/aminomethyl transferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00051   19.5   0.0    0.00076   18.9   0.0    1.2  1  GCV_T     Aminomethyltransferase folate-binding domain


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.2e-08   0.00076      45     125 ..       1      79 [.       1      89 [. 0.90

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.2e-08
       GCV_T  45 vShmgkievsGpdaaalLqrlltndisklkpgkatytlllnedGgvidDlivarldedefllvvnaankekdlawlekaae 125
                 ++ +  +e++G d++++Lq  +t++i+++   +   t+++n +G+v   + +ar+    f +v++++++++ + +++k+ +
  EGE27744.1   1 MTDFCYFEMTGTDSEKFLQGQITANIADIG-EQFLPTAICNLKGRVQFGIWIARTL-AGFDIVMSSDMADNFIMHIKKYGA 79 
                 578999***********************8.99***********************.59************9999999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1732.54
//
Query:       EGE27745.1  [L=112]
Description: alkylphosphonate utilization operon protein PhnA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-32  111.8   5.2    1.3e-32  111.5   5.2    1.1  1  PhnA            PhnA domain
    3.9e-11   42.7   4.8    5.7e-11   42.2   4.8    1.2  1  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
  ------ inclusion threshold ------
      0.048   13.2   0.5        0.1   12.1   0.5    1.5  1  TF_Zn_Ribbon    TFIIB zinc-binding
       0.19   11.8   3.8        1.8    8.8   0.0    2.3  2  UPF0547         Uncharacterised protein family UPF0547
       0.42   10.4   3.0        1.8    8.4   3.0    2.0  1  PADR1           PADR1 (NUC008) domain
        1.3    9.0   4.2         17    5.4   4.2    2.3  1  zinc_ribbon_4   zinc-ribbon domain
        1.4    9.3   5.0       0.63   10.4   0.6    2.1  2  DUF4379         Probable Zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PhnA  PhnA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   5.2   4.9e-36   1.3e-32       1      69 []      42     112 .]      42     112 .] 0.96

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 4.9e-36
                 -B-SS--B--TTEEEEESS-EEETTTTEEE-TT-EEEEEEE-.-SS..E.EEEE-SS-EEEEEETTSEEE- CS
        PhnA   1 vkDsnGnvLadGDsVtvikdLkVkGssstiKrGtkvknirLv.ddg.dhdidckvdgfgamvLksefvkKa 69 
                 +kD++Gn+L+dGD Vtv+kdLkVkGss++iK+Gtkvk+irL+ d + dhdidck+dgfgam+Lks++vkKa
  EGE27745.1  42 IKDAVGNILNDGDAVTVVKDLKVKGSSTPIKVGTKVKSIRLIyDAPdDHDIDCKIDGFGAMKLKSSVVKKA 112
                 69****************************************877778**********************7 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   4.8   2.2e-14   5.7e-11       2      30 .]       3      31 ..       2      31 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 2.2e-14
  PhnA_Zn_Ribbon  2 lpkCplCaSeytYedgallvCpeCahEwe 30
                    lp Cp+C  +ytY+dg ll+Cp+C hEw+
      EGE27745.1  3 LPDCPQCHESYTYADGMLLICPMCTHEWQ 31
                    8***************************6 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5   4.1e-05       0.1       3      31 ..       6      32 ..       5      34 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.1e-05
                  ETTTTCEECHEETSTTCE.EESSSSBEEEE CS
  TF_Zn_Ribbon  3 CPnCgstnlveDpergel.vCtdCGlVled 31
                  CP C+ +++   ++ g l +C+ C+  +++
    EGE27745.1  6 CPQCHESYT---YADGMLlICPMCTHEWQE 32
                  ******875...6667777*****988765 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   1.4     0.035        90       3       8 ..       6      11 ..       5      12 .. 0.82
   2 ?    8.8   0.0   0.00068       1.8      16      26 .]      22      32 ..      20      32 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.035
     UPF0547  3 CPeCea 8 
                CP+C +
  EGE27745.1  6 CPQCHE 11
                ****75 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00068
     UPF0547 16 fCphCGyvFqa 26
                +Cp C +++q+
  EGE27745.1 22 ICPMCTHEWQE 32
                8********96 PP

>> PADR1  PADR1 (NUC008) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.0   0.00071       1.8      13      41 ..       3      31 ..       2      32 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00071
       PADR1 13 lekCpeCkegqlvfdssgYkCtGnmsewt 41
                l+ Cp+C+e+  + d+    C+    ew+
  EGE27745.1  3 LPDCPQCHESYTYADGMLLICPMCTHEWQ 31
                899*****988888888888988888886 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   4.2    0.0068        17       5      35 ..       6      30 ..       5      31 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0068
  zinc_ribbon_4  5 CpsCkakyeiddeklpakgvkvrCskCghvF 35
                   Cp+C+  y+ +d      g+ + C+ C h +
     EGE27745.1  6 CPQCHESYTYAD------GMLLICPMCTHEW 30
                   ********9988......6777777777776 PP

>> DUF4379  Probable Zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.6      0.28   7.2e+02      32      39 ..       6      13 ..       4      16 .. 0.74
   2 ?   10.4   0.6   0.00025      0.63      29      41 ..      20      32 ..      10      37 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.28
     DUF4379 32 CakCgheW 39
                C++C++++
  EGE27745.1  6 CPQCHESY 13
                77787777 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00025
     DUF4379 29 wWkCakCgheWea 41
                + +C++C+heW++
  EGE27745.1 20 LLICPMCTHEWQE 32
                568********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 841.44
//
Query:       EGE27746.1  [L=434]
Description: glutamate-1-semialdehyde aminotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-75  252.7   0.3    5.9e-75  252.4   0.3    1.0  1  Aminotran_3    Aminotransferase class-III
    0.00034   19.9   0.0    0.00049   19.4   0.0    1.2  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.4   0.3   6.5e-79   5.9e-75       9     378 ..      36     401 ..      30     427 .. 0.92

  Alignments for each domain:
  == domain 1  score: 252.4 bits;  conditional E-value: 6.5e-79
                  SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHH CS
  Aminotran_3   9 lllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKl 106
                  +++++++a+G+y++d +++ y+D v+s+ +++lGhah +v++avk++a++   +sfga t +++  +a+ + +++p  +d + +  sG+eA+++A++l
   EGE27746.1  36 VPVFVQRAKGAYIYDTENNAYIDYVGSWGPMILGHAHDQVIDAVKAAAEDG--LSFGAPTPSET-TMADLICQIIPS-VDLLRMTSSGTEATMSAIRL 129
                  569************************************************..999**999887.589999*****9.******************** PP

                  HHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETT CS
  Aminotran_3 107 arkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqge 204
                  ar       +t + ki++f+g++HG+    l  +gs  ++ +  +p++ +v+   ++ +++l++n+      +e+l+a  ++   e+a vi+Epi g+
   EGE27746.1 130 ARG------YTGRDKIVKFEGCYHGHSDSLLVKAGS--GMLDIGEPTSKGVPIDFAKHTVTLPYND------IEALTACFHEFGHELACVILEPIAGN 213
                  ***......9**************************..99999999999888888888899****9......888888889***************** PP

                  TTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTT..TTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS...B--TTTT-HHH CS
  Aminotran_3 205 gGvvvaspeflaklrelckkhdvllivDEvqtGf..GrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs...hgsTfgGnpla 297
                  + +++++++f ++lr+lc++++v+li+DEv+tGf  G  G   A  h+g++pDl+t++K +++Glp+ a+ +++e+m+ +ap +   +++T +Gnpla
   EGE27746.1 214 MNMIIPTQAFHQTLRQLCTEYGVVLIFDEVMTGFrvGLGG---AQVHFGITPDLTTFGKIIGAGLPVGAFGGKREIMECIAPLGgvyQAGTLSGNPLA 308
                  **********************************666666...***************************************99999*********** PP

                  HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.............HHHHHHHHHCTEE-EEET CS
  Aminotran_3 298 cavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.............keilkkakekGvlilsaG 378
                  +++  a+++ +  + + e   ++  +l +gL+++++k++v  +  ++G m+++ + ++   k+             +++++ +++ Gv++ ++ 
   EGE27746.1 309 MRAGKAMFDELMVDGFYETLGQKTTYLIDGLKAAAAKHQVAFQACSVGGMFGMFFSDSLP-KNfndvanlcdaqkfAKFFHGMLDLGVYLAPSA 401
                  *****************************************************6666655.44588999***999999999999***9998876 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.5e-08   0.00049     130     334 ..     186     399 ..     168     422 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.5e-08
                    E-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSS CS
  Aminotran_1_2 130 ldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGl 225
                    +d+eal +   e+  +    +vil   + N+   ++t +  ++l +l+++y+++l++De+  gf  g  +a ++++++ ++      ++++K  G 
     EGE27746.1 186 NDIEALTACFHEFGHEL--ACVILEPIAGNMNMIIPTQAFHQTLRQLCTEYGVVLIFDEVMTGFRVGLGGA-QVHFGITPDL-----TTFGKIIG- 272
                    46666666666653333..477777778899999999999***************************4455.4488888875.....5*******. PP

                    GGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS....TEEEECCS.CSSEEEEEETHH CS
  Aminotran_1_2 226 aGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael....glkvlasq.sgmflltdlsae 315
                    aG+ vG++ g+ ++ ++++ l   +   + ++ ++++ a ++    +  ++   ++l +++++l d+L+++     +++ a   +gmf +   + +
     EGE27746.1 273 AGLPVGAFGGKREIMECIAPLGGVYQAgTLSGNPLAMRAGKAMF-DELMVDGFYETLGQKTTYLIDGLKAAaakhQVAFQACSvGGMFGMFFSDSL 367
                    599****************9998888865555555555444433.233789999999999999999998887776333333333555555443333 PP

                    ...........CHHHHHHH...HHHTCTEEEEE CS
  Aminotran_1_2 316 ...........takelskk...Lleevgvyvtp 334
                               +a++++k    +l+  gvy+ p
     EGE27746.1 368 pknfndvanlcDAQKFAKFfhgMLDL-GVYLAP 399
                    44455555555333333334446666.666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3354.71
//
Query:       EGE27747.1  [L=932]
Description: preprotein translocase subunit SecA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.4e-130  434.1   1.4   4.3e-130  433.2   1.4    1.4  1  SecA_DEAD       SecA DEAD-like domain
    9.6e-63  211.8   7.6    9.6e-63  211.8   7.6    2.7  2  SecA_SW         SecA Wing and Scaffold domain
    1.6e-34  118.9   0.1    6.7e-34  116.9   0.1    2.1  1  SecA_PP_bind    SecA preprotein cross-linking domain
    4.4e-10   39.3   7.5    7.3e-10   38.6   7.5    1.4  1  SEC-C           SEC-C motif
    4.4e-06   26.6   0.0    0.00013   21.8   0.0    2.7  3  DEAD            DEAD/DEAH box helicase
     0.0014   18.9   1.9      0.011   16.1   0.0    2.7  2  Helicase_C      Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.059   13.0   0.0    1.6  1  DNA_ligase_A_M  ATP dependent DNA ligase domain
       0.48   10.8   3.2       0.44   10.9   0.5    2.4  2  EccE            Putative type VII ESX secretion system transl
        2.3    8.2   6.7       0.51   10.3   1.1    3.0  4  ResIII          Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.2   1.4  2.1e-133  4.3e-130       2     290 .]       7     402 ..       6     402 .. 0.98

  Alignments for each domain:
  == domain 1  score: 433.2 bits;  conditional E-value: 2.1e-133
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD   2 kkllgsknerelkklkkiveeineleeelkalsdeeLrakteelkerlaegealdellpeafalvreaakrvlgmrhydvQliGglvlhegkiaemkTG 100
                 ++++g+kn+relk+++kiv++in+ e+++++lsd+eLr+ktee+k r ++ge+ld+llpeafa++rea+krv gmrhydvQliGg++lhegkiaemkTG
  EGE27747.1   7 STVIGTKNDRELKRMRKIVTKINSYESSIQSLSDDELRQKTEEFKLRHQAGESLDKLLPEAFAVCREASKRVNGMRHYDVQLIGGMALHEGKIAEMKTG 105
                 57899********************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 101 EGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerreaYeaditYgtnnelgfdyLrDnlalskeelvqrgln 199
                 EGKtl+atl++ylna++gkgvhvvtvndYLa+rda+  +p+++flGl+vgvi s++ ++e+ +aY+aditYgtnne+gfdyLrDn+++s +e+ qr ln
  EGE27747.1 106 EGKTLMATLAIYLNAISGKGVHVVTVNDYLANRDAQLNRPLFDFLGLTVGVIYSQQAPQEKFAAYRADITYGTNNEYGFDYLRDNMVFSLSEKKQRPLN 204
                 *************************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................... RF
   SecA_DEAD 200 faivDEvDsvLiDeArtpLiisgpaeeeselyeeakklvkeleeeed.................................................... 246
                 ++i+DE+Ds+LiDeArtpLiisg+ae++++ly  ++++v++l +++d                                                    
  EGE27747.1 205 YCIIDEIDSILIDEARTPLIISGQAEDSAHLYALIDNIVERLVRSKDeednknntdgdfwideknrtieisekgyekiesflaevgelgeneslyspar 303
                 ***************************************88887777777889999******************************************* PP

                 .......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 247 .......................................................akegveieeesqtlatitlqnffrlYeklaGmtGTaeteaeefk 290
                                                                        akegvei+ e+qt+at t+qn+frlY+kl+GmtGTa+tea+e+k
  EGE27747.1 304 lpllahaqaairahhlfvknihyivqdgeviivdentgrtmpgrrwsdglhqaveAKEGVEIQAENQTMATTTFQNYFRLYDKLSGMTGTADTEAAELK 402
                 *************************************************************************************************96 PP

>> SecA_SW  SecA Wing and Scaffold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.097   1.9e+02      52     102 ..     226     275 ..     213     389 .. 0.63
   2 !  211.8   7.6   4.8e-66   9.6e-63       1     198 [.     617     829 ..     617     830 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.097
                 CTHHCHHHHHHHHHHHHHHHHHCHHHHS.SS.CSHHHHHHHHHCCCSSSTS CS
     SecA_SW  52 egesedlrerildliedvveeiveesvpeeekeewdleglleelkeefsve 102
                 +g++e  + ++++li+++ve++v+++ +e++k++ d +   +e +++++++
  EGE27747.1 226 SGQAE-DSAHLYALIDNIVERLVRSKDEEDNKNNTDGDFWIDEKNRTIEIS 275
                 45444.488899999999999996666655554444333333333333332 PP

  == domain 2  score: 211.8 bits;  conditional E-value: 4.8e-66
                 -B-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHCHHHHHHHHHHHHHHHHHCHHHHS.SS.C.SHHHHHHHHHCCCS CS
     SecA_SW   1 piesklvsksienaQkkvEernfdiRknlleYDdVmnkQRkviYkqRrevLegesedlrerildliedvveeiveesvpeeeke.ewdleglleelkee 98 
                 +ie+k+vs++ienaQ kvE+r fd Rk+ll+YDd+ n+QRkviY+qR+++L++   dl+  i+++ ++v ++++++ vp+ + + +w+++gl++e++e 
  EGE27747.1 617 AIEHKMVSRAIENAQGKVEARDFDARKSLLKYDDIANEQRKVIYSQRDDLLAE--MDLQAGIQAMHHEVYHALINQFVPPGSIDdQWNIDGLEDEIEEA 713
                 69*************************************************54..59**********************887745************** PP

                 SSTSST..............HHHHHHHHHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSSS-CCHHHHHHHHHHHH CS
     SecA_SW  99 fsvele..............elaeellekaekayekkeeei..ellrelervvlLevlDkaWkehLdamdeLregiglrgygqkdPlqeYkkegfelFe 181
                 f ++++               l+ +++e+a ++y++++e++  ++  +ler+++L++lD++WkehL++md+Lr+gi+lr+y+qk+P qeYk+e+felF+
  EGE27747.1 714 FRFDMPindwldadrrldeeGLRAKIIETAIERYQTRREQMgeQTAAQLERHFMLTSLDRHWKEHLTQMDQLRKGIHLRSYAQKNPEQEYKRESFELFQ 812
                 ****99**************9********************9666999*************************************************** PP

                 HHHHHHHHHHHHHCCCT CS
     SecA_SW 182 emlarikeevvkkllkv 198
                 +ml +ik++ ++ l +v
  EGE27747.1 813 SMLGAIKSDLIQDLARV 829
                 *************9987 PP

>> SecA_PP_bind  SecA preprotein cross-linking domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.1   3.3e-37   6.7e-34       3     111 .]     233     358 ..     231     358 .. 0.91

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 3.3e-37
                   HHHHHHHHHHHCCCHTTC...........CECCCTTTSEEEESHHHHHHHHHCCT-......SSSTTSCCHCCHHHHHHHHHHHHHCSTTTTTEEEC CS
  SecA_PP_bind   3 eelyekanklvkklkeee...........dyevdekkktveltekGvekvekllkv......keelydeenlelvhhvnqaLkAhtlferdvdYivk 82 
                   ++ly  ++++v++l +++           d+ +dek++t+e++ekG+ek+e++l        +e+ly++++l l+ h ++a++Ah+lf ++ +Yiv+
    EGE27747.1 233 AHLYALIDNIVERLVRSKdeednknntdgDFWIDEKNRTIEISEKGYEKIESFLAEvgelgeNESLYSPARLPLLAHAQAAIRAHHLFVKNIHYIVQ 329
                   67899999999998876667888888888************************7334666669********************************** PP

                   TTCEEEBSTTTSSEBTS--SSTTHHHHHH CS
  SecA_PP_bind  83 dgeviivDeftGRlmegrrysdGLhqaie 111
                   dgeviivDe+tGR+m+grr+sdGLhqa+e
    EGE27747.1 330 DGEVIIVDENTGRTMPGRRWSDGLHQAVE 358
                   ****************************8 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   7.5   3.7e-13   7.3e-10       1      19 []     912     930 ..     912     930 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 3.7e-13
       SEC-C   1 RNdpCPCGSGkKYKkCCgp 19 
                 RN+pCPCGSG+KYK+C+g+
  EGE27747.1 912 RNAPCPCGSGLKYKQCHGK 930
                 9****************97 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.6e-08   0.00013      18     134 ..      99     215 ..      86     226 .. 0.79
   2 ?    1.3   0.0      0.13   2.6e+02     142     170 ..     435     460 ..     423     465 .. 0.82
   3 ?   -3.6   0.0       4.2   8.4e+03      98     124 ..     827     853 ..     808     859 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.6e-08
                 EEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH.....HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxx RF
        DEAD  18 lvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp.....grlddl 111
                 +++++TG GKTl++ ++++ +       +g+ + +v+    La+  ++  + ++++++l+v +i++++a +++ ++   ++di++gt      + l d 
  EGE27747.1  99 IAEMKTGEGKTLMATLAIYLNA-----ISGKGVHVVTVNDYLANRDAQLNRPLFDFLGLTVGVIYSQQAPQEKFAAY--RADITYGTNneygfDYLRDN 190
                 6899**************9444.....4566667777788899999999999999***********99997777777..9*******966555444442 PP

                 H....HCTSSHCTTEEEEEEETHHHHH CS
                 x....xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 112 l....stgklnlsqvrflVlDEadrll 134
                 +    s++k   + +++ ++DE+d +l
  EGE27747.1 191 MvfslSEKK--QRPLNYCIIDEIDSIL 215
                 257665555..8999*********987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.13
                 HHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 142 inrilnqlpqitcdgklqrqvivlSATlp 170
                 ++ i+++++qit++g     v+v +AT++
  EGE27747.1 435 YKGIIREIKQITEKGA---PVLVGTATIE 460
                 6778999999999887...59******97 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 4.2
                 CSEEEEEHHHHHHHHHCTSSHCTTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddllstgklnlsqvrf 124
                 +++ v tp+ l+ l ++++ + +q+r+
  EGE27747.1 827 ARVHVPTPEELAALEEQRRQQAEQMRM 853
                 677788888888877777767777766 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.4e-06     0.011       9      82 ..     441     513 ..     433     515 .. 0.78
   2 ?    0.8   0.6      0.31   6.2e+02      93     111 .]     561     579 ..     553     579 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.4e-06
                 HH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHH.HHHHHHHTTSSS.EEEESGGGTSSSTS CS
  Helicase_C   9 ll.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnere.eileqfnkgesd.vLiatdvaerGidi 82 
                 ++ + +e+g  +l+ + ti+  e++++ll+++gi   vl++  +q ere +i++q   g+ + v iat++a+rG di
  EGE27747.1 441 EIkQITEKGAPVLVGTATIEASEELSYLLNQEGIAHNVLNA--KQHEREaDIIAQA--GRPRaVTIATNMAGRGTDI 513
                 443456889999********99889****************..4555552556665..44454************98 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.31
                 SSSSHHHHHHHHTTSSSTT CS
  Helicase_C  93 lprnvtsyiqriGRtgRag 111
                   ++ +  +q +GR+gR g
  EGE27747.1 561 RHESRRIDNQLRGRAGRQG 579
                 556778899********75 PP

>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.9e-05     0.059      61     116 ..     314     373 ..     288     392 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-05
                     HHHHHHBSTTESEEEEEEEEEEEETTTTCBEHHHHHCHHHHCHC....CTHHHHHHSEEE CS
  DNA_ligase_A_M  61 kalkeafkkdeksvilDGElvavdketgeilpfqklasrkkkkk....kveeklkeaelc 116
                      +++++f k+++ ++ DGE+++vd++tg+ +p   +++   +++     ve +++++ + 
      EGE27747.1 314 IRAHHLFVKNIHYIVQDGEVIIVDENTGRTMPGRRWSDGLHQAVeakeGVEIQAENQTMA 373
                     45679999***9**********************99998866663433133343444444 PP

>> EccE  Putative type VII ESX secretion system translocon, EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   0.00022      0.44      27      78 ..     449     500 ..     440     549 .. 0.78
   2 ?   -2.2   0.1       2.7   5.4e+03      46      62 ..     729     746 ..     728     787 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
        EccE  27 ggtegaaraaaaaarRlakaLreqGirarvleaeeldaalaalavglaaapa 78 
                 g+   +++a + a++ l   L+++Gi+ +vl+a+++++ ++ +a++ +++++
  EGE27747.1 449 GAPVLVGTATIEASEELSYLLNQEGIAHNVLNAKQHEREADIIAQAGRPRAV 500
                 5556689999***************************999999987766665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.7
        EccE  46 aLreqGirarvlea.eel 62 
                 +L+e+G+ra++ e   e 
  EGE27747.1 729 RLDEEGLRAKIIETaIER 746
                 788888888887652333 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.1   0.00025      0.51      25      60 ..      96     131 ..      28     282 .. 0.78
   2 ?   -2.7   0.0       2.6   5.1e+03      98     140 ..     276     338 ..     234     339 .. 0.45
   3 ?   -1.6   0.0       1.1   2.3e+03      92     169 ..     368     459 ..     347     461 .. 0.51
   4 ?   -2.6   0.1       2.4   4.7e+03      91     119 ..     839     866 ..     771     877 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
                 SEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEE CS
      ResIII  25 krglikmaTGtGKTlvaaklierllkkgkeekflfl 60 
                 +  + +m TG GKTl+a+ +i+  + +gk  +++ +
  EGE27747.1  96 EGKIAEMKTGEGKTLMATLAIYLNAISGKGVHVVTV 131
                 555789***********8888877777776676655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.6
                 ......-SEEEEEHHHHHHTH..........................HHHTTT-S.............EEEEET CS
      ResIII  98 ekdstnkkilvttiqsldadseee..................eeeseellrdrfd.............viiiDE 140
                 ek  ++++ +++++ +l ++++                                +             vii+DE
  EGE27747.1 276 EKGYEKIESFLAEVGELGENESLYsparlpllahaqaairahH-----------LfvknihyivqdgeVIIVDE 338
                 4444444444444444444443333333444332222222220...........12222333333333777776 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.1
                 S-B--.......-SEEEEEHHHHHHTH........HHHTTT-S.EEEEETGGGTTS......T.......TTHHHHHT---......SEEEEEESS- CS
      ResIII  92 dkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfd.viiiDEaHrlgak.....k.......swreilekfke......avllglTATp 169
                 ++++    ++t+ + ++  +++l+    +++ e  el++++ + v+ii   Hr  a      +       +++ i++ +k+       vl+g TAT+
  EGE27747.1 368 ENQTM---ATTTFQNYFRLYDKLSGMTGTADTEAAELKSTYDLdVVII-PTHRPIARidmddQifltklgKYKGIIREIKQitekgaPVLVG-TATI 459
                 33333...4555555555555555555444444444444443325554.5777777655544044445556666654444444445577777.7776 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.4
                 SS-B--.......-SEEEEEHHHHHHTH. CS
      ResIII  91 gdkkkakekdstnkkilvttiqsldadse 119
                   ++++ +++++++++++++  +ld +++
  EGE27747.1 839 ALEEQR-RQQAEQMRMMFEQQAQLDDAQS 866
                 333333.5566777777777777766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 6371.63
//
Query:       EGE27748.1  [L=98]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0088   16.1   0.2      0.011   15.7   0.2    1.2  1  DUF5061   17 kDa common-antigen outer membrane protein
  ------ inclusion threshold ------
      0.019   15.4   2.3      0.029   14.8   2.3    1.3  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> DUF5061  17 kDa common-antigen outer membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   1.3e-06     0.011       2      84 ..       9      84 ..       8      95 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-06
     DUF5061  2 aalvalllLaaCalkqeaasqeeegevvekpleeflsqepagasavLddsefGksvrvlveekftsAsGreCrrltvlaeqge 84
                +al a+++L+aCa+k+++a+ ++ +e  e+p    +s epa  ++v+      +s++ +v e f  A+G   + + v++ ++ 
  EGE27748.1  9 LALSAMIVLSACAQKTKEATAKPVEE-KEVP----MSAEPAEPMIVVPSDSSDSSIEQVVPEAF--AEGDSTQIAEVIEIDET 84
                68999*********875444444333.3444....77888888887777777888888888888..55666666666655555 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   2.3   3.3e-06     0.029       1      18 []       1      21 [.       1      21 [. 0.96

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.3e-06
      LPAM_1  1 MKKi...llalgalllLsGCs 18
                MKK+    lal+a+ +Ls+C+
  EGE27748.1  1 MKKLiwqALALSAMIVLSACA 21
                9***9999************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 784.02
//
Query:       EGE27749.1  [L=528]
Description: apolipoprotein N-acyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-32  112.5   0.0    2.8e-32  112.1   0.0    1.2  1  CN_hydrolase  Carbon-nitrogen hydrolase
  ------ inclusion threshold ------
      0.085   12.7   0.0       0.15   11.8   0.0    1.4  1  TruB_C        tRNA Pseudouridine synthase II, C terminal


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   3.1e-36   2.8e-32       4     261 .]     232     484 ..     209     484 .. 0.87

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 3.1e-36
                   EEEBB-...STTHHHHHHHHHHHHHHHHHHT.TESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEEC...CTTEEE CS
  CN_hydrolase   4 vvQlpq...kaadleanlqklleliaeAark.gadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavviglierel...tngklq 93 
                   ++Q ++    +++   ++q+l  ++    ++ g dL+v+PE++i+ +++ea             + +la+ a+  g a ++g+++r++   ++++ +
    EGE27749.1 232 LIQGNIpqdLKWQEGFGIQTLGIYAGLSQSEwGRDLVVWPEAAIPLFQDEAS----------DHINALAKQANADGSAWITGIMYRKTpsdASNQAE 318
                   5555555553355555555555555555566899***********8844444..........5799********************99***999999 PP

                   EEEEEEEEETTSEEEEEEE-SS--E.ECTTSCECCGHHTSCS........-SS.S-EEEETTE...EEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH CS
  CN_hydrolase  94 ayntavlldldgklvgkyrKlhLfp.geprpptaverelfep........gdg.ipvfdtpvg...kiGaaiCyeigfpellralalkgaeilvnls 177
                   +yn+++l d+++   + y K  L+p ge+ p + ++  l++         gd+  +++++ +g    iGaaiCye  +pe++r++al g ++l+++s
    EGE27749.1 319 FYNSVMLYDANQV--SVYKKQQLVPfGEYVPFGGLLDILPGLegvaslsrGDDkQTPLKLGGGvgdTIGAAICYEVAYPETTRKNAL-GSNFLLTVS 412
                   9*******99987..9*************************99******9777788889988899******************9666.56666666* PP

                   .GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHHHHHH CS
  CN_hydrolase 178 erapvpksmgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvratrr 261
                   ++a+++   gp q++++ ++r+le+g + ++a+++g+           +a+id +Gri+ + +++++++l  +++ ++v++t++
    EGE27749.1 413 NDAWFGTTAGPLQHLQMVQMRSLETGRWFVRATNNGV-----------TALIDHQGRIIKQIPQFQRDILRGDVP-SYVGRTPY 484
                   *************************************...........***************************.99998876 PP

>> TruB_C  tRNA Pseudouridine synthase II, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.7e-05      0.15      11      39 ..     432     460 ..     423     460 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.7e-05
                 HHHHHTT---B-----S-EEEE-TTS-EE CS
      TruB_C  11 ArdlrhGrrLeaagikgvvAaiaPdGrli 39 
                  r+l  Gr+  +a++ gv+A i+ +Gr i
  EGE27749.1 432 MRSLETGRWFVRATNNGVTALIDHQGRII 460
                 58999**********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4107.47
//
Query:       EGE27750.1  [L=646]
Description: lactoferrin binding protein B LbpB, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-31  108.6   4.3    3.2e-31  108.6   4.3    2.7  3  TbpB_B_D  C-lobe and N-lobe beta barrels of Tf-binding protei


Domain annotation for each model (and alignments):
>> TbpB_B_D  C-lobe and N-lobe beta barrels of Tf-binding protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.7      0.14   2.5e+03      77     106 ..      92     120 ..      71     127 .. 0.43
   2 ?   -3.5   0.1       0.7   1.3e+04      83      88 ..     230     235 ..     211     266 .. 0.54
   3 !  108.6   4.3   1.8e-35   3.2e-31       1     136 []     291     482 ..     291     482 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.14
                 TEEEEEEEETTT-TTSSTT-S............-S-CEEEEE CS
    TbpB_B_D  77 nrFtgkakakdkkkekkenss............kkkdakveG 106
                 n+   +              s            +++++   +
  EGE27750.1  92 NNTDNST-------------SttdpngdnnqltQAQKTAAAA 120
                 1111111.............1112211122223444444444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.7
                 EEETTT CS
    TbpB_B_D  83 akakdk 88 
                 ++a++k
  EGE27750.1 230 QQADNK 235
                 111111 PP

  == domain 3  score: 108.6 bits;  conditional E-value: 1.8e-35
                 CESSSEEEEEEEEEEEEEESTTSEEEBTT.............E-SS-SSCSC.................EEEEEEETTTTEEEEEEEE........... CS
    TbpB_B_D   1 lPksgkakYkGtwlgyidakenkageesd.............eadkeaeaga.................kaefdvdFgekkltGkLte........... 58 
                 lP++gk++Y+G+wl+++d+k++ a ++sd             +++      +                 +a+++vdF++++ltGkL++           
  EGE27750.1 291 LPSAGKFNYTGNWLYLSDVKKRPALSASDdrvgvylnasgksNEG------DvvsaahiylngfqykhtPATYQVDFDTNSLTGKLSYydnpnqqnnkg 383
                 7*******************9999988888999998666555333......234445588999999999******************999999999999 PP

                 .........TT-SSB--SEEEEEEEETTEEEEEEEETTT-TTSSTT-S.............-S-CEEEEEEEESTTT-EEEEEE.E-TTCEEEEEEEEE CS
    TbpB_B_D  59 .........engeekkkkvdieakIkgnrFtgkakakdkkkekkenss.............kkkdakveGgFYGpnAeELgGkfsesedkklggvFgAk 135
                          +++ +++++++i+akI+gnrF+g+ak+  +++++++                  ++ ++eGgFYG++++EL+Gkf  s+d++ ++vFg+k
  EGE27750.1 384 eylksqfdtTKKVNETDVYQIDAKINGNRFVGTAKSLIDDNTNTAPFIkelfskkanpnnpDPNSDTLEGGFYGESGDELAGKF-LSNDNASYVVFGGK 481
                 999888888777777888******************99888888887799********998889999*****************.*************9 PP

                 E CS
    TbpB_B_D 136 k 136
                 +
  EGE27750.1 482 R 482
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4725.82
//
Query:       EGE27751.1  [L=457]
Description: CRISPR-associated protein, Csy1 family [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.8e-110  368.2   1.2   6.7e-110  367.7   1.2    1.2  1  Cas_Csy1  CRISPR-associated protein (Cas_Csy1)
  ------ inclusion threshold ------
      0.021   15.1   3.6      0.055   13.7   3.6    1.7  1  DUF755    Domain of unknown function (DUF755)


Domain annotation for each model (and alignments):
>> Cas_Csy1  CRISPR-associated protein (Cas_Csy1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.7   1.2  7.4e-114  6.7e-110       2     378 .]      59     438 ..      58     438 .. 0.95

  Alignments for each domain:
  == domain 1  score: 367.7 bits;  conditional E-value: 7.4e-114
    Cas_Csy1   2 YelaawLedaakrak.....qlslvTHilkfihpdakgsnllvakeskeedeyvgshnlkdvaiDvvG.nAAa....Ld.vaklLklevdgksllelle 89 
                 Ye ++wL+++++ ++     qls++TH++k+ih+  k++n++  +++k + ++vgs+++ +++iD+++ n  +    L+ ++ ++++ev+g +++el++
  EGE27751.1  59 YESTCWLAEVFNSIQemqnhQLSFATHTAKGIHTALKTENVISISNTKLPVGLVGSQSIPHLMIDANSnNPGShseyLKyIIGFINVEVNGVRIYELIQ 157
                 99***********9999999************************************************4455588898889****************** PP

    Cas_Csy1  90 eddeelkealsddaeqaeelkeaflallekk.kepsthelaKQvYfpvgdedddYhlLspLysssLahalkqriqavrfseeakearearrekkaheeg 187
                 +++  ++e ++  ++q+++  + +++ll kk   ++t+ ++KQ++f+++  d++Y++L+pLy++s++h++ q+i++v++se + +ar++rre+k ++++
  EGE27751.1 158 SENVVMMEFFK--KHQQASGFDYLNKLLLKKpLGEQTDGKNKQLLFYQQ--DGNYTCLIPLYPTSITHYVCQKISNVKYSEVNLQARKNRRENK-DPAP 251
                 **********9..5568889999999999999****************6..6******************************************.9*** PP

    Cas_Csy1 188 yadipnLavqklGGTkpqNiSqLNsergGkayLLaSlPPqlkqrk..rlplklesvfprkdlfkeslevrelvdelkrllklvkekennleiRdkrdel 284
                 y+d+pnLav+ lGGT+++N+S LN+ +gG++yLL+SlPP+++q++  +l+  +e+      +f++++  ++++d+++ ++++vk+++n++++Rdkr+++
  EGE27751.1 252 YCDMPNLAVTILGGTNSNNVSRLNNIQGGRNYLLPSLPPKISQDRefSLSKFCEN------FFESKTLKYHIQDDFNYVVQVVKDTRNTIDVRDKRKDA 344
                 *******************************************994444445555......55555569****************************** PP

    Cas_Csy1 285 ldelidellqlaaelrklaeaGWskdeeckLkraqklWLdpeRae..edaefaeerekedWqkeiaerfanwlnaqlekel.kkklklgdaElrewk 378
                 +d+l+++++ +a+ l+++ +aGWsk++  +L++aqk+WLdp+Ra+  ++a+fa+e++k++Wqk i ++fa+w+n+ql+++  + k++++daE++ew+
  EGE27751.1 345 IDRLLHTIFGIAHVLQNK-PAGWSKTY--ALPLAQKIWLDPYRADldGEAKFADEKTKQEWQKIILQDFASWFNQQLRSTVkELKFDFADAEYNEWQ 438
                 ****************99.********..****************99**********************************999************7 PP

>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.6   6.1e-06     0.055      13      88 ..      25      98 ..      18     108 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.1e-06
      DUF755 13 kkqyklrtqkqkkqkqssttgttdgalLqkqLlkEcqktsqLiqlsqqlqqkkqkkrkeqkkssqthkkkkkksrn 88
                 +++k +tq+qk+ + s +++ +  + L  +L+ +++ t  L ++++ +q+  q+++ + +++  +  ++  k++n
  EGE27751.1 25 DRELKKKTQTQKN-NLSEQNLNKKRDGLYDKLKSDYESTCWLAEVFNSIQEM-QNHQLSFATHTAKGIHTALKTEN 98
                6789*********.***********************************443.44444444444444444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1086  (0.0605723); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3596.94
//
Query:       EGE27752.1  [L=311]
Description: CRISPR-associated Csy2 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-92  309.8   0.0    2.2e-92  309.6   0.0    1.0  1  Cas_Csy2  CRISPR-associated protein (Cas_Csy2)


Domain annotation for each model (and alignments):
>> Cas_Csy2  CRISPR-associated protein (Cas_Csy2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.6   0.0   1.2e-96   2.2e-92       3     295 ..      12     304 ..      10     305 .. 0.96

  Alignments for each domain:
  == domain 1  score: 309.6 bits;  conditional E-value: 1.2e-96
    Cas_Csy2   3 lphlkvqnANaiSsplTiGfPaltaflGavhaLerkl..aeaeaelklkgvgvvchdvqlqtykgke.fvrsfkltrnPlkkdgktaaiveEgrihLev 98 
                 ++++ + +AN+iSsplT+G+Palt+f+Ga+haL+r+l  +e++a+l+l gv ++c++++ +ty++++ ++++f++trnPlkkdgkta+iveEg+++L +
  EGE27752.1  12 FHKMVIYDANTISSPLTYGLPALTGFTGAFHALSRTLmaDERFADLALGGVLLACYECTPKTYRAGRyHDHTFNQTRNPLKKDGKTAPIVEEGKCNLVM 110
                 67899********************************9999**************************9******************************* PP

    Cas_Csy2  99 sLvievege..leeedkeelaekvkellatmrlAGGdilkiekvklieleedeeekakelrrllrrllpgfalverrdllaeeleelqeeapeadalda 195
                 s+ +ev ++  l+e++++el++ +++++ ++r+AGG++++i k++ +++        +++++++  l+p+f+l+++++ ++e ++++q+++p+a++ld+
  EGE27752.1 111 SFAVEVLASdlLSEKRSQELTQFLSQAIFRQRIAGGSVMNIAKTHPVRYF-----GFESMHQIVPLLMPAFVLMDASSEFSELIDKAQSTDPKATPLDV 204
                 ******9995434779***********************99999988873.....35679*************************************** PP

    Cas_Csy2 196 lLdlaalnhtaekdeegekveWeakkkk.ergwlvpipvGYqalsplyeagevknardaetphrfvEsvyslGewvsphrl.qkledllWryesdeekg 292
                 lLd+++l+h ++ d +g +++W++k+ k ++gw+vp+p+GYqa+s+++eag+++n r++e+p+++vE vy+lG+wv+ph+l +++e+ +Wr+++d e+g
  EGE27752.1 205 LLDVCTLHHLPKLDLDG-NTKWHTKSIKtGHGWIVPMPMGYQAISEQFEAGKMDNVRNPEYPSQYVEVVYGLGKWVYPHHLkDNIETAFWRQHYD-ETG 301
                 ****************9.*****999998****************************************************999***********.999 PP

    Cas_Csy2 293 lYl 295
                 lYl
  EGE27752.1 302 LYL 304
                 **8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2605.99
//
Query:       EGE27753.1  [L=335]
Description: CRISPR-associated Csy3 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-145  484.8   0.6   1.5e-145  484.6   0.6    1.0  1  Cas_Csy3  CRISPR-associated protein (Cas_Csy3)


Domain annotation for each model (and alignments):
>> Cas_Csy3  CRISPR-associated protein (Cas_Csy3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  484.6   0.6  8.4e-150  1.5e-145       1     328 []       6     329 ..       6     329 .. 0.99

  Alignments for each domain:
  == domain 1  score: 484.6 bits;  conditional E-value: 8.4e-150
    Cas_Csy3   1 lasvLaferklepSdalllatnwderkeekeplklqeksvrGtisnrlksalkkdpakldaeiekaNlqtvdvaalpadadtlklsftlkvlsslekps 99 
                 +a+vLafer+l++Sd++++++n++++++   p+++qeks+rGtisnrlk+++++dpakldaeiekaNlq+vd+a+l +d+dtl +s+t+kvl+  +kp+
  EGE27753.1   6 TATVLAFERNLDISDGFMAQKNSQNENSGIVPVRIQEKSIRGTISNRLKNTITNDPAKLDAEIEKANLQKVDSASLLEDNDTLIVSWTCKVLPFDGKPN 104
                 699************************************************************************************************ PP

    Cas_Csy3 100 acndaefkekleelvkkyiekegfkelakRYaeNlangRfLWRNrvgaekievqvkalekekekswefdalelslrsfeeesedlkelakliakalsge 198
                 +cnd+++++kl ++v+ y +++g+k+la+RYa+N+an+R+LWRNr+g+eki+v+v+++  +++++++fda+++s+++f++++ +l++la++i+++l+++
  EGE27753.1 105 VCNDPNYQAKLLQTVQGYLQEHGVKTLAHRYATNIANARWLWRNRIGSEKITVNVTCKLADQQQTLTFDAKSISIHNFDTQNPELMTLANWIEQGLTNQ 203
                 *************************************************************************************************** PP

    Cas_Csy3 199 eefvlleveafvklGagqevyPSqelvldkskgkkskilyqvegvaalhsqKignAlrtiDtWYpeaeelkpiavepygavtekgkayRqpkdKkDfyt 297
                  +f++l+++a + +G gqevyPSqel+ld++k  ksk+ly+++++a++hsqKignA+rtiDtWYpea+   piavepyg+vt++g+a+Rqp++K+Dfy+
  EGE27753.1 204 -SFIILNITAEAVVGYGQEVYPSQELILDTGKT-KSKVLYHINDKAGIHSQKIGNAIRTIDTWYPEAQ--FPIAVEPYGQVTTMGTAFRQPRQKQDFYS 298
                 .****************************9998.**********************************..***************************** PP

    Cas_Csy3 298 lldkwvlkdelpsvedqhyviavLirGGvfg 328
                 l+d wvlkd++psve+qhyv+avL+rGGvfg
  EGE27753.1 299 LFDGWVLKDNKPSVENQHYVMAVLVRGGVFG 329
                 ******************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2634.48
//
Query:       EGE27754.1  [L=196]
Description: CRISPR-associated Csy4 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-57  194.0   0.5    2.7e-57  193.8   0.5    1.0  1  Cas_Csy4       CRISPR-associated protein (Cas_Csy4)
  ------ inclusion threshold ------
      0.024   15.1   0.0      0.037   14.5   0.0    1.3  1  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> Cas_Csy4  CRISPR-associated protein (Cas_Csy4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.8   0.5     3e-61   2.7e-57       1     182 []       4     196 .]       4     196 .] 0.96

  Alignments for each domain:
  == domain 1  score: 193.8 bits;  conditional E-value: 3e-61
    Cas_Csy4   1 YleitllpdaeislefllsklftklHlalveleakd....iGvsFPey...a....ktlGsklRlfg.seeeLeelqakkwlkrlrdyvhiseiraVpe 87 
                 Y+eitl+p+a+is+++++skl+t+lHla+ve+++++    +GvsFP+y   a    + lG klR+f+ +e++L++l+ +k l++l+dy+his+ir+Vp+
  EGE27754.1   4 YQEITLIPQADISPHAVWSKLYTQLHLAFVEQKDEQdktiYGVSFPQYrtiAdkkiAYLGCKLRVFApTEQALSALNLDKQLEHLADYIHISSIRSVPD 102
                 9********************************9999***********766156799****************************************** PP

    Cas_Csy4  88 kvsgyrvvrRvqekssaerlarrrlkrqglteeearkriadskekklklpflqlkSlstgqkfrlfiekkelqesekagefssYGLsrkatvPwF 182
                 +++gy+ + R+ +k++ + +  +++kr+g+++++a++r++++ke++l +p++ql+S+s++++++l+i k++++  +++ +f +YGLsr+++vP+F
  EGE27754.1 103 DIKGYANYYRAIPKMTLDERITHQAKRHGVPYHKAAERFENYKEQSLVYPHIQLTSKSNHRSYPLHIGKQAAEVLTDG-RFGTYGLSRTSSVPEF 196
                 ******************999***********************************************8887777765.**************99 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.1e-06     0.037      27      92 ..      60     137 ..      54     152 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-06
  NAD_binding_7  27 leagakvtvvapev..keele............elvkl.aeeelekdlegadlviaatddrelneriaeaakarrilvnva 92 
                    +  g+k+ v ap+       +            + +++ + + +++d++g++  + a+++  l eri ++ak+ +++   a
     EGE27754.1  60 AYLGCKLRVFAPTEqaL---SalnldkqlehlaDYIHIsSIRSVPDDIKGYANYYRAIPKMTLDERITHQAKRHGVPYHKA 137
                    5568999*****95330...245555433322222222135668****************************999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1505.88
//
Query:       EGE27755.1  [L=96]
Description: hypothetical protein EA1_00150 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-34  115.3   0.1    8.4e-34  115.1   0.1    1.0  1  Iron_traffic  Bacterial Fe(2+) trafficking
  ------ inclusion threshold ------
       0.12   12.5   0.1       0.21   11.7   0.1    1.4  1  IGR           IGR protein motif


Domain annotation for each model (and alignments):
>> Iron_traffic  Bacterial Fe(2+) trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.1   9.3e-38   8.4e-34       3      87 ..       9      93 ..       7      94 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 9.3e-38
  Iron_traffic  3 rtvfcvklkkeaegLdfpplpgelGkrifenvskeawqeWlkkqtmLiNekrLnladpkarkfLeeqmekflfgegaekpegyvp 87
                  ++vfc+k++++++ L++pp+p+++G++i +++s +aw++Wl+ qtmLiNek+L+++dp+a+k+L+eq ekfl ++++ekp+gy+p
    EGE27755.1  9 HMVFCRKYQQNLPKLPNPPFPNAKGQEIQDTISAKAWNAWLELQTMLINEKHLSMIDPQAKKYLNEQREKFLDNGDYEKPAGYKP 93
                  79*********************************************************************************98 PP

>> IGR  IGR protein motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.3e-05      0.21      21      52 ..      45      79 ..      32      82 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.3e-05
         IGR 21 wekLfelsskqlkelGi...pvrqRRYiLrwreky 52
                w++ +el++   +e+ +   ++++++Y+ ++rek+
  EGE27755.1 45 WNAWLELQTMLINEKHLsmiDPQAKKYLNEQREKF 79
                66666666666666554445**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 752.19
//
Query:       EGE27756.1  [L=158]
Description: putative thioesterase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-17   62.5   0.1    6.1e-17   62.2   0.1    1.1  1  4HBT_2       Thioesterase-like superfamily
    1.1e-14   54.5   0.1    1.7e-14   53.9   0.1    1.3  1  4HBT         Thioesterase superfamily
    0.00045   19.6   0.8      0.039   13.3   0.6    2.0  2  Acyl-ACP_TE  Acyl-ACP thioesterase
  ------ inclusion threshold ------
      0.033   14.1   0.8      0.085   12.8   0.8    1.7  1  DUF3724      Protein of unknown function (DUF3724)


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.1   1.4e-20   6.1e-17       2     107 ..      33     135 ..      32     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 1.4e-20
      4HBT_2   2 rpndvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgkkaarveer 100
                  ++d+D + h+nn++y ry+e+ar+ ++  +g+    +ar+  + il+s+ ++yrrp+++pd l + +r+ +   +++  e++++s+a++ ++a++e +
  EGE27756.1  33 AWGDMDGFNHVNNVAYYRYAESARIAYMRAIGF---MAAREDLLTILASSSIQYRRPVTYPDTLLIGVRIKHLGSTSVVQEYAMYSQAQQTLVASGEAV 128
                 69***************************9999...6666778*******************************************999988*****99 PP

      4HBT_2 101 ivvmdyg 107
                 iv  d++
  EGE27756.1 129 IVRTDMN 135
                 9999884 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.1   3.9e-18   1.7e-14       1      77 [.      40     120 ..      40     122 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 3.9e-18
                 TSSB-HHHHHHHHHHHHHHHHHHTTST....TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCE CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggr....gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrl 77 
                 +++v++ +y++++++a+ a++r +g++    + l   ++ si+++rpv+++d+l++ +r+ +lg+ts+v e+ ++++ +++
  EGE27756.1  40 FNHVNNVAYYRYAESARIAYMRAIGFMaareDLLTILASSSIQYRRPVTYPDTLLIGVRIKHLGSTSVVQEYAMYSQAQQT 120
                 58****************************9999999*************************************9998765 PP

>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.6   8.6e-06     0.039     162     180 ..      33      51 ..      21      60 .. 0.85
   2 !    4.6   0.0    0.0037        17      51     114 ..      69     133 ..      56     156 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.6e-06
  Acyl-ACP_TE 162 rysDlDlnqHvNNvkYlew 180
                   + D+D ++HvNNv Y  +
   EGE27756.1  33 AWGDMDGFNHVNNVAYYRY 51 
                  588*************876 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0037
  Acyl-ACP_TE  51 klnlvWvvakyeieierlpefgdkveietwaesenklfcyrdfkvrdekgekii.eaksvfvlmd 114
                  + +l+ + a+ +i+  r++ + d++ i   ++  +   + +++ ++ ++ ++++   ++v v  d
   EGE27756.1  69 REDLLTILASSSIQYRRPVTYPDTLLIGVRIKHLGSTSVVQEYAMYSQAQQTLVaSGEAVIVRTD 133
                  45688889999999999999999999999999999999999999999666665514455555544 PP

>> DUF3724  Protein of unknown function (DUF3724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.8   1.9e-05     0.085       6      19 ..     107     120 ..     105     121 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
     DUF3724   6 vVeDYsrYtqatqn 19 
                 vV+ Y +Y+qa q+
  EGE27756.1 107 VVQEYAMYSQAQQT 120
                 9**********886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1277.88
//
Query:       EGE27757.1  [L=73]
Description: hypothetical protein EA1_00160 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 565.14
//
Query:       EGE27758.1  [L=460]
Description: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-27   96.7   0.1    2.3e-27   96.3   0.1    1.2  1  Mur_ligase_M  Mur ligase middle domain
    3.4e-16   59.3   0.0    7.8e-16   58.2   0.0    1.7  1  Mur_ligase    Mur ligase family, catalytic domain
    1.8e-11   44.1   0.1    1.9e-10   40.9   0.0    2.6  3  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.1   3.8e-31   2.3e-27       1     192 []     108     301 ..     108     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 3.8e-31
                   EESSS-HHHHHHHHHHHHHCT.EEEEETTC.....SS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHC..TTTCCH.CBESEEEE---TSTTHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka.gkvigtvg.....ttnneiglpktlaemekkeaeyavlEvsshglge..krlegl.lkpdvavitnispdHldfh 88 
                   v+Gt+GKTTtt+++a+il+ + + + +++g     +  ++  l +++++    + +++v+E+ +++ +   kr + + ++p+ a+++n++ dH d +
    EGE27758.1 108 VAGTHGKTTTTTMLAWILQFSgIDTGFLIGgvplvN-TDDRRLSLAFQHSSYLGKQFFVIEADEYDSAFfdKRSKFVhYRPTTAILNNLEYDHADIF 203
                   89******************9755777777888975.5777999999999999************9999967777779******************* PP

                   SSHHHHHHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHH CS
  Mur_ligase_M  89 gtlenyaeaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNa 185
                    +l+++ + + ++++ ++++g  +i ad p++++  +k      +vv+ +l+++ae  +++++ + ++g+++ ++  ++ ++ +++++ G hnv+Na
    EGE27758.1 204 ADLDAIQTQFHHMIRMIPSKGQIIIPADTPSLETTLDK--GVWTTVVRTSLNGDAE--WQAKLDA-NDGSSFWVH-HNNTSAMVRWSMSGLHNVNNA 294
                   ******************************55555555..23345*********96..4667777.578888666.7889999************** PP

                   HHHHHHH CS
  Mur_ligase_M 186 laaiaaa 192
                   l aiaaa
    EGE27758.1 295 LTAIAAA 301
                   *****96 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   1.3e-19   7.8e-16       1      83 [.       2      98 ..       2     103 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.3e-19
                EEEEESTTSCCHHHHHHHHHHTTSEEEEEESSHC......HHHTT-EEEES-HGGGG.......EE-T.S-TTCHHHHHHHHTTEEEEEHHHHHHHH CS
  Mur_ligase  1 eihfigidgrgmsagalflalkGykvdGsdfies......lialGaaavvghdaani.......vvss.iskdnpeleaakepgipvesraeaLael 83
                +ih++gi+g++m+++al++++ G++v+Gsd++ +      l ++G+++  g +a+++       vv++  +++ p +e+  + ++p+ s +++L e 
  EGE27758.1  2 HIHILGICGTFMGSLALLARDLGHTVTGSDANIYppmstqLADAGVEVWEGYHAEHLiptpdliVVGNaCKRGMPAIEYMLNERLPYTSGPQFLYET 98
                8*******************************************************************9************************9875 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.8   1.6e+04      39      56 ..     101     115 ..      97     121 .. 0.67
   2 !   40.9   0.0   3.1e-14   1.9e-10       1      49 [.     321     369 ..     321     399 .. 0.81
   3 ?   -0.7   0.0       0.3   1.8e+03      25      49 ..     419     443 ..     418     453 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.8
                   SSSEEEEEEEESTT.CCS CS
  Mur_ligase_C  39 pdkrlilvfgpggelger 56 
                   +d+++++v+g   + g+ 
    EGE27758.1 101 KDRHVLAVAGT--H-GKT 115
                   67888999997..4.334 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 3.1e-14
                   CTTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEE CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgp 49 
                   +k+R+e++g  d+++v+dD ah+p+++s +l+++++  + +r++++  p
    EGE27758.1 321 IKRRMELIGDVDDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEP 369
                   58********************************************987 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.3
                   HHHHHHHHHHHHHSSSSEEEEEEEE CS
  Mur_ligase_C  25 dslsaalkalreiapdkrlilvfgp 49 
                   ds++a ++ ++++a+++  i++   
    EGE27758.1 419 DSINAIIEHIKTYAKAGDAIIIMSN 443
                   7999999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3436.72
//
Query:       EGE27759.1  [L=169]
Description: disulfide bond formation protein B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-36  125.0  11.2    3.5e-36  124.8  11.2    1.0  1  DsbB      Disulfide bond formation protein DsbB
  ------ inclusion threshold ------
        3.8    7.8  13.9       0.28   11.4   1.4    2.9  3  DUF3784   Domain of unknown function (DUF3784)
          6    7.1  12.1        1.2    9.3   2.4    2.6  3  VKOR      Vitamin K epoxide reductase family


Domain annotation for each model (and alignments):
>> DsbB  Disulfide bond formation protein DsbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8  11.2   5.9e-40   3.5e-36       2     146 ..       7     159 ..       6     160 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 5.9e-40
                 HHHHHHHHHHHHHHHHHH.HHHHCTTTTSXXSHHHHHHHHHHHHHHHHHHTT.SSSS....HHHHHHHHHHHHHHHHHHHHHHHHHHHSX-S.STSB-. CS
        DsbB   2 rllllllalaslallalA.lyfqhvlglePCelCvyqRlallliallallaa.iapk....rllllllallaalvgaalaarhvgvellpwd.pasCg. 92 
                 r+l ++l l+++a  ++A  y+q +l l+PC+lC++qR+ l++++++allaa i+p+    rl+l++  ++++l+g+++aarh+++++ p++ p +Cg 
  EGE27759.1   7 RTLNIILSLIMVAGSVYAiGYLQNYLMLDPCPLCIFQRIGLWIMGIFALLAAiINPRqklvRLILWVGSMVGTLWGFGVAARHTWIHYAPSAqPPACGp 105
                 77889999999999999999********************************9999997666688899999999******************889**96 PP

                 BSXXXTTSXHHHHSSTTTTTXXSSSSSSSXECTTSEHHHHHHHHHHHHHHHHHH CS
        DsbB  93 slptfpealpldewlpevfkatgdCgeadwkllglsmaqwnllifalllllllv 146
                 +l+++++++p++++l +v++++gdCg++dw+l+gls++  ++++f++++l+ ++
  EGE27759.1 106 GLEYWVQTMPMSKVLTTVLTGNGDCGMIDWTLMGLSIPAQAMILFMIIALIQVI 159
                 6************************************************99876 PP

>> DUF3784  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2       0.1   6.1e+02      72      92 ..      10      30 ..       5      32 .. 0.74
   2 ?   11.4   1.4   4.7e-05      0.28      41      90 ..      38      83 ..      33      88 .. 0.78
   3 ?    3.5   0.9     0.014        82      55      84 ..     133     160 ..     111     169 .] 0.54

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.1
     DUF3784 72 liialiviiiiviylivyank 92
                 ii  ++++++++y+i y+++
  EGE27759.1 10 NIILSLIMVAGSVYAIGYLQN 30
                466677888889998888876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.7e-05
     DUF3784 41 klsrfmgivllligilflllgllsaiesealliialiviiiiviylivya 90
                +l+ f +i+l ++gi+ ll++++    +    ++ li+++++++++++++
  EGE27759.1 38 PLCIFQRIGLWIMGIFALLAAII----NPRQKLVRLILWVGSMVGTLWGF 83
                79************777777777....66666677888888888888765 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.014
     DUF3784  55 ilflllgllsaiesealliialiviiiivi 84 
                 i + l+gl   i  +a++++ +i++i ++i
  EGE27759.1 133 IDWTLMGLS--IPAQAMILFMIIALIQVII 160
                 446778888..3333333333333333333 PP

>> VKOR  Vitamin K epoxide reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.4    0.0002       1.2      76     122 ..       6      53 ..       1      55 [. 0.82
   2 ?    2.1   0.3     0.035   2.1e+02      59      86 ..      45      81 ..      42      96 .. 0.59
   3 ?    2.5   2.2     0.025   1.5e+02      10      73 ..      82     159 ..      69     166 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHHHHHHHH.HHHHTTS----HHHHHHHHHHHHHHHH CS
        VKOR  76 lwlllllgslagvvfslyLi.ylslfvigalCpyClvsavlsllllvl 122
                 +++l +++sl++v++s+y i yl+ + + + Cp+C+   +  +++ ++
  EGE27759.1   6 YRTLNIILSLIMVAGSVYAIgYLQNYLMLDPCPLCIFQRIGLWIMGIF 53 
                 56677899999****9997658999999********999988888765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.035
                HHHHHHHHHHHHHHS-..........HHHHHHHHHHH CS
        VKOR 59 lGllayalvlllalapl.........lwlllllgsla 86
                +Gl    +++lla++ +         lw++ ++g+l 
  EGE27759.1 45 IGLWIMGIFALLAAIINprqklvrliLWVGSMVGTLW 81
                5666666667776666678777444444444444443 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHH...HT---SS-..SSSS......HHHHHCSTTS..........EETTEEHHHHHHHHHHHHHHHHHS CS
        VKOR  10 GllvsiyltleklglktsssaalC..diss....vsCdkvlnSpya..........silgvplsllGllayalvlllala 73 
                 G+ v++  t+ ++    s+++++C  +++     +  +kvl++             +++g++++  +++ +++++l+ ++
  EGE27759.1  82 GFGVAARHTWIHYA--PSAQPPACgpGLEYwvqtMPMSKVLTTVLTgngdcgmidwTLMGLSIPAQAMILFMIIALIQVI 159
                 44444444444442..3344447743122232223344444444445555555555566666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1331.47
//
Query:       EGE27760.1  [L=558]
Description: glutamate--cysteine ligase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.7e-137  456.9   0.0   5.2e-137  456.4   0.0    1.2  1  Glu_cys_ligase  Glutamate-cysteine ligase


Domain annotation for each model (and alignments):
>> Glu_cys_ligase  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.4   0.0  2.9e-141  5.2e-137      12     371 ..      57     420 ..      53     421 .. 0.96

  Alignments for each domain:
  == domain 1  score: 456.4 bits;  conditional E-value: 2.9e-141
                     GGTT-EEEEEEEEEEE-TTSSB--S-S-GGG--TTT-SSEEE-SBTTEEEEE---BS-HHHHHHHHHHHHHHHHTSS.TT-EE--SSS-SS-ST. CS
  Glu_cys_ligase  12 llkkikrGiErEslRvteegklaqtphpkalGsalthksittDfsEallEfiTpveksveelleeLedlhrfvakkl.edellwplSmPcvlek. 104
                     l+++++rGiE+E lR++++g  a+t hp++lGs+lth++ittD+sE+llE+iT+++ s++++l+ L+dlh  v+++l +del+wplSmPc+ ++ 
      EGE27760.1  57 LVAGMQRGIEKEGLRMQPDGYSAKTFHPAKLGSKLTHPYITTDYSENLLELITKPMPSIKQALDMLRDLHVLVHRSLeNDELMWPLSMPCMTSDt 151
                     67899************************************************************************559**********98652 PP

                     TGGS-B----SSHHHHHHHHHHHHHHHHH-SGGGG--EEEEEEE--HHHHHHCH-S--TTHHHHHHHHHHHHHHHHHHHHTTHHHHHH--BSEEE CS
  Glu_cys_ligase 105 eeeipiaqygssnagklktvYRegLklrYGkkmqviaGvHyNfSlseelwealkeeeekekskefiseaylalirnfrrlgwlllYLfGaspavd 199
                     +++ip+a+ygssn+gklkt+YR+gL  rYG+kmq+iaG+HyN S+ ++l+ +++++e++++ ++f++++ylalirnf+rl+ l+lYL Gaspav+
      EGE27760.1 152 DSDIPLADYGSSNIGKLKTLYRSGLGVRYGRKMQTIAGLHYNLSVGDDLFGVWQHAEGAKDLTAFKNDKYLALIRNFKRLTPLVLYLLGASPAVC 246
                     679*******************************************************9888********************************* PP

                     GGG-----S--EE-.TTSEEE-TT-SBGGGSTTSS-SGBCTTTT--SS-HHHHHHHHHHHHTSB-HHHHCT-SE.ETTEE-SS-SBSSSSGGGSB CS
  Glu_cys_ligase 200 ksflkgrklelekl.dketlylpyatsLRlsdlGYtnkaqkklkisynsleeYveslkkaiktpseeyekigvk.kdgeykqlntnvLqienEfY 292
                      +f++gr+++l  l ++ ++++p  tsLR+++lGYtn+aq++l+i yn+l+eY++ l++ai tp++++e+igv   +g  +q+n+++LqienE+Y
      EGE27760.1 247 GTFVSGRQHNLIPLgTTCSYHQPNGTSLRMGKLGYTNSAQEDLDIRYNHLDEYIKGLQAAIGTPYADFEAIGVDdAHGVPIQINNHILQIENEYY 341
                     *******7677777245567789**************************************************988999**************** PP

                     -SEEEE----TT--HHHHHHHH---EEEEEEEE--TTSTTS--HHHHHHHHHHHHHHHHS------HHHHHHHHHHHHH CS
  Glu_cys_ligase 293 ssirpkrvtksgekpleaLerrGveYiEvRalDvnpfsplGieeeqlrfldlfllyclleespelseeeleeikknlek 371
                     s+irpk++++ +e+p++aL++rG+ Y+E Ra+D++p+s++Gi++ ++ fl+++ lycl+++sp l  ee +++++n++ 
      EGE27760.1 342 SPIRPKQTATASETPTQALQARGIAYVEFRAIDLDPYSDIGITSVTACFLEILALYCLFTDSPYLMPEEEKRLNQNIDI 420
                     ****************************************************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4031.38
//
Query:       EGE27761.1  [L=110]
Description: iron-sulfur cluster insertion protein ErpA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-17   64.2   0.0    1.3e-17   64.0   0.0    1.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   7.1e-22   1.3e-17       3     110 ..       5     105 ..       3     106 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 7.1e-22
                  EEE-HHHHHHHHHHHHCTTEC...EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke...lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLk 97 
                  +tlt++Aa+kl kl+++++++   lr++v  gg       Cs g++y +++ +e   ++d++++++   ++v+s s ++l  g ++d++e+l+++++ 
   EGE27761.1   5 LTLTNKAAAKLAKLKHTEGNDalmLRVYVTGGG-------CS-GFSYGFDFAEEL-GDDDTTFDNGSEILVVDSLSYQYL-VGSTIDYTEGLEGSRFI 92 
                  8******************99*88888888888.......**.************.************************.9**************** PP

                  EETCCEEEEEEEE CS
  Fe-S_biosyn  98 sdngilddnvglg 110
                   +n+ +++++g+g
   EGE27761.1  93 VNNPSATTTCGCG 105
                  ************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 816.64
//
Query:       EGE27762.1  [L=286]
Description: nitrate ABC transporter ATPase subunits C and D [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-30  106.7   0.0    1.9e-30  106.1   0.0    1.3  1  ABC_tran      ABC transporter
      7e-06   26.0   0.0    1.2e-05   25.3   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
    4.2e-05   23.2   0.0    9.4e-05   22.1   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
    4.9e-05   23.3   0.1      0.062   13.1   0.1    2.3  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00024   21.6   0.6     0.0004   21.0   0.6    1.2  1  AAA_23        AAA domain
    0.00065   19.5   0.5     0.0011   18.8   0.5    1.3  1  AAA_15        AAA ATPase domain
     0.0015   18.0   0.8       0.16   11.4   0.2    2.2  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0023   18.0   0.0     0.0052   16.8   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0053   16.8   0.0     0.0095   16.0   0.0    1.4  1  Dynamin_N     Dynamin family
     0.0075   16.6   0.3      0.018   15.3   0.1    2.0  2  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.023   15.1   0.0    1.6  1  AAA_16        AAA ATPase domain
      0.017   15.0   0.0      0.031   14.2   0.0    1.5  2  Rad17         Rad17 P-loop domain
       0.02   15.1   0.1      0.037   14.3   0.1    1.4  1  AAA_28        AAA domain
      0.023   14.4   0.0      0.054   13.2   0.0    1.6  1  IstB_IS21     IstB-like ATP binding protein
      0.043   14.4   0.0      0.079   13.5   0.0    1.5  1  AAA_18        AAA domain
      0.053   13.1   0.0      0.095   12.2   0.0    1.4  1  FeoB_N        Ferrous iron transport protein B
      0.055   13.9   0.1       0.62   10.5   0.0    2.2  2  AAA           ATPase family associated with various cellular 
       0.08   13.0   0.0       0.15   12.1   0.0    1.7  1  CbiA          CobQ/CobB/MinD/ParA nucleotide binding domain
      0.091   12.3   0.0       0.24   11.0   0.0    1.6  2  AAA_25        AAA domain
      0.095   12.7   0.0       0.19   11.7   0.0    1.5  1  AAA_5         AAA domain (dynein-related subfamily)
      0.096   11.8   0.0       0.17   11.0   0.0    1.3  1  G-alpha       G-protein alpha subunit
       0.13   12.7   0.0       0.31   11.5   0.0    1.7  1  RNA_helicase  RNA helicase
       0.16   11.8   0.0       0.31   10.8   0.0    1.5  1  PduV-EutP     Ethanolamine utilisation - propanediol utilisat


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   2.5e-33   1.9e-30       2     136 ..      28     168 ..      27     169 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 2.5e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...............esdeei 85 
                 +nv+++++++e + ++G++G+GKSt+l++lagl+    Geil+ +k++++      + e gv++q + l p ltv++n               e +++i
  EGE27762.1  28 ENVNFNIQKNEFICLIGHSGCGKSTILNALAGLEVASFGEILMYDKPVTQ-----PSLERGVVFQSHALLPWLTVGKNigfalkaktpnlsvaETNRQI 121
                 79***************************************888777777.....888899*******************************999**** PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + +l  +gl ++kd++     s+LSgG+kqrv +ara+++kp+lll+DEp+
  EGE27762.1 122 DFYLGMVGLAKVKDKKP----SQLSGGMKQRVGIARAFATKPELLLMDEPF 168
                 ***********999998....*****************************6 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.5e-08   1.2e-05      90     130 ..      27      68 ..       5      73 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.5e-08
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  +e+++ ++++ ++++l+G+SG GKSt++nal++ + ++ ge+
   EGE27762.1  27 FENVNFNIQKnEFICLIGHSGCGKSTILNALAGLEVASFGEI 68 
                  577888888879********************9888777776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.2e-07   9.4e-05      12      45 ..      27      60 ..      24      65 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.2e-07
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTllDAiqal 45
                f++  ++i+ ++++ l+G+sG GKST+l A++ l
  EGE27762.1 27 FENVNFNIQKNEFICLIGHSGCGKSTILNALAGL 60
                788889999899******************9765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1     8e-05     0.062       1      35 [.      39      61 ..      39      92 .. 0.79
   2 !    8.0   0.0    0.0028       2.1     235     298 ..     139     200 ..      92     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltde 35
                + +liG  g+GKS++L al +l            e
  EGE27762.1 39 FICLIGHSGCGKSTILNALAGL------------E 61
                678****************999............3 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0028
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHP....kllrrllellkelsrngaQviltTHS 298
                 ++lS G+k+  +++ a++    k+ lll DEp   L+      ++ +l+ ++ ++++    v++ TH+
  EGE27762.1 139 SQLSGGMKQRVGIARAFA---TKPELLLMDEPFGALDAltrgVIQDELVNIVADTHQ---TVFMITHD 200
                 677888888855555555...4559*************6666666777777777777...99*****8 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.6   5.1e-07    0.0004      10      40 ..      27      58 ..      22      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.1e-07
      AAA_23 10 frdqeidF.skgltlItGpNGaGKTTildAik 40
                f++++++  ++ + +++G+ G+GK+Til+A+ 
  EGE27762.1 27 FENVNFNIqKNEFICLIGHSGCGKSTILNALA 58
                7777777777799*****************95 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.5   1.4e-06    0.0011      15      43 ..      28      57 ..      26      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.4e-06
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsileal 43
                ++v  +++++ + +liG+ ++GKS+il+al
  EGE27762.1 28 ENVNFNIQKNeFICLIGHSGCGKSTILNAL 57
                56666677767******************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.2   0.00021      0.16      23      44 ..      36      57 ..      25      63 .. 0.83
   2 ?    5.2   0.0     0.016        12     133     197 ..     137     199 ..      96     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
                TSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnlldAi 44
                +++f +++G+ G+GKs +l+A+
  EGE27762.1 36 KNEFICLIGHSGCGKSTILNAL 57
                45799***************98 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.016
                 STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH.HCTTSE.EEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxx RF
       SMC_N 133 skelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke.ksknaQ.fivisl 197
                 ++++LSgG k+ v +a  fA++   p  l l+De   aLD+  +  + + l +   ++ Q +++i++
  EGE27762.1 137 KPSQLSGGMKQRVGIARAFATK---P-ELLLMDEPFGALDALTRGVIQDELVNiVADTHQtVFMITH 199
                 4569***************975...3.4889999999999999888776554312222332455555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.7e-06    0.0052       2      22 ..      40      60 ..      39      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.7e-06
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                ++++G++  GKSt++nal g 
  EGE27762.1 40 ICLIGHSGCGKSTILNALAGL 60
                89****************984 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05    0.0095       1      30 [.      40      69 ..      40      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
                EEEEEBTTTTHHHHHHHHHTS--S---SSS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnp 30
                i+++G+   GKS++lnaL g ++   g+++
  EGE27762.1 40 ICLIGHSGCGKSTILNALAGLEVASFGEIL 69
                789*****************9998777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.3e-05     0.018       5      28 ..      37      60 ..      33     205 .. 0.87
   2 ?   -2.1   0.0       5.4   4.2e+03      52      90 ..     217     260 ..     213     265 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.3e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleq 28
                  +++++G+sG+GK+t l+ l+  
  EGE27762.1 37 NEFICLIGHSGCGKSTILNALAGL 60
                679***************999865 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.4
      AAA_22  52 sskdllrellralglelka.....erlsseellealeqalrara 90 
                 +++ +l e+++++  +  +       ++   ++++l + l +r+
  EGE27762.1 217 GPRAFLAEIVENTIPKPRHrdsihHHHQYYKIRNHLLDFLVHRS 260
                 67778888887777555556666666666666666666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   2.9e-05     0.023      25      45 ..      38      58 ..      24      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.9e-05
      AAA_16 25 elvllsGesGvGKsslvrell 45
                e + l+G+sG+GKs+++++l+
  EGE27762.1 38 EFICLIGHSGCGKSTILNALA 58
                7899*************9997 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     4e-05     0.031      41      75 ..      33      67 ..      14     120 .. 0.85
   2 ?   -3.4   0.0       9.8   7.7e+03     107     127 ..     156     176 ..     132     206 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4e-05
       Rad17 41 esrkkriLLisGPsGCgkstvvkvLskelgiklre 75
                + +k++ + + G sGCgkst+++ L+   + ++ e
  EGE27762.1 33 NIQKNEFICLIGHSGCGKSTILNALAGLEVASFGE 67
                55777888899**************9877776655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.8
       Rad17 107 esfkeleLkdakylklqklGd 127
                 ++ +el+L+d  +  l+ l  
  EGE27762.1 156 ATKPELLLMDEPFGALDALTR 176
                 455566666655555544444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   4.8e-05     0.037       2      24 ..      40      62 ..      39      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.8e-05
      AAA_28  2 ivitGgestGKTtlleaLaargy 24
                i+++G +++GK+t+l+aLa  ++
  EGE27762.1 40 ICLIGHSGCGKSTILNALAGLEV 62
                99****************96555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.9e-05     0.054      44      69 ..      34      59 ..      26      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.9e-05
   IstB_IS21 44 iekkenivllGpsGvGKshlaialgv 69
                i+k+e i+l+G+sG GKs +  al+ 
  EGE27762.1 34 IQKNEFICLIGHSGCGKSTILNALAG 59
                8999****************999975 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0    0.0001     0.079       1      22 [.      40      61 ..      40     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.0001
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                I+l G +G+GK+t+ ++L+ ++
  EGE27762.1 40 ICLIGHSGCGKSTILNALAGLE 61
                9*****************8775 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012     0.095       3      24 ..      40      61 ..      38      66 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
                EEEEESTTSSHHHHHHHHHTTS CS
      FeoB_N  3 valvGnpnvGkttlfnaltgak 24
                ++l+G   +Gk+t++nal+g +
  EGE27762.1 40 ICLIGHSGCGKSTILNALAGLE 61
                789****************986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0008      0.62       1      20 [.      40      59 ..      40      81 .. 0.89
   2 ?    1.2   0.0      0.59   4.6e+02      50     118 ..     151     204 ..     103     215 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0008
                EEEESSTTSSHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavak 20
                ++l+G  G+GK+++ +a+a 
  EGE27762.1 40 ICLIGHSGCGKSTILNALAG 59
                68***************996 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.59
                 HHHHHHTS.TSEEEEEET....GGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHH CS
         AAA  50 fkeakeka.kpsilfiDE....idalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpa 118
                 +++a   a kp  l++DE    +dal++            ++++L++ + +  +     +v ++t++   +d+a
  EGE27762.1 151 IARAF--AtKPELLLMDEpfgaLDALTRG----------VIQDELVNIVADTHQ-----TVFMITHD---IDEA 204
                 33333..3458899999854444555433..........477777777777766.....45555554...4455 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00019      0.15       6      55 ..      44     159 ..      39     273 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00019
                 SSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH.................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................. RF
        CbiA   6 tkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep.................................................. 54 
                 + +G GK+t++ +La +      ++l++D  +  ++l+   g++ + +                                                   
  EGE27762.1  44 GHSGCGKSTILNALAGLEVASFGEILMYDKPVTQPSLE--RGVVFQSHAllpwltvgknigfalkaktpnlsvaetnrqidfylgmvglakvkdkkpsq 140
                 789**************************988888887..33332222256666666666777777777777777777777777777666666666666 PP

                 ..................C CS
                 ..................x RF
        CbiA  55 ..................d 55 
                                    
  EGE27762.1 141 lsggmkqrvgiarafatkP 159
                 6664444444444444440 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0003      0.24      30      54 ..      34      58 ..      28      78 .. 0.88
   2 ?   -2.4   0.1       3.7   2.9e+03     171     188 ..     182     199 ..     172     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0003
      AAA_25 30 lpagelallaGapgtGKttlaldla 54
                + ++e++ l+G++g+GK+t++  la
  EGE27762.1 34 IQKNEFICLIGHSGCGKSTILNALA 58
                56899***************98887 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.7
      AAA_25 171 aleriarrtgaavllvhH 188
                  l +i + t+ +v+++ H
  EGE27762.1 182 ELVNIVADTHQTVFMITH 199
                 677889999999999999 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.19       2      23 ..      40      61 ..      39      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
                EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5  2 vlLvGppGtgKselaerlaaal 23
                ++L+G +G+gKs++   la + 
  EGE27762.1 40 ICLIGHSGCGKSTILNALAGLE 61
                69*************9999765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00022      0.17      25      47 ..      39      61 ..      22      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
                EEEEEESTTSSHHHHHHHHHHHC CS
     G-alpha 25 kllllGqseSGKsTilkqlklly 47
                 + l+G+s++GKsTil+ l  l+
  EGE27762.1 39 FICLIGHSGCGKSTILNALAGLE 61
                489*************9987665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00039      0.31       1      19 [.      40      58 ..      40      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00039
  RNA_helicase  1 iwlyGpsgeGKStlakeLa 19
                  i+l G+sg+GKSt+ + La
    EGE27762.1 40 ICLIGHSGCGKSTILNALA 58
                  799************9986 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0004      0.31       4      26 ..      40      62 ..      37      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0004
   PduV-EutP  4 illiGkvgsGKttLtqalkgeel 26
                i liG++g+GK t+ +al g e+
  EGE27762.1 40 ICLIGHSGCGKSTILNALAGLEV 62
                78****************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2033.83
//
Query:       EGE27763.1  [L=294]
Description: nitrate ABC transporter, inner membrane subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-18   67.1  18.9    1.6e-18   67.1  18.9    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.13   2.3e+03     114     132 ..      19      37 ..      13      65 .. 0.66
   2 !   67.1  18.9     9e-23   1.6e-18       1     184 [.     121     291 ..     110     292 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.13
  BPD_transp_1 114 lilafggllggavlleflg 132
                   ++l+++g++  a+l+  ++
    EGE27763.1  19 IVLSVIGIWHTATLPKQIT 37 
                   4455555555555555554 PP

  == domain 2  score: 67.1 bits;  conditional E-value: 9e-23
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   +i+lG+ ++  ++ +l  + +p++++l  + +++++++ +        +++++ + i+++++ ++++++ +++ ++ s+ ++++++a++l +s+ ++
    EGE27763.1 121 AIPLGYAIG--MSPVLGSAATPFVQILKPISPLAWMPIAL------YTIKDSNASSIFVIFICSIWPMLTNTAFGVASVRREWRNVAKTLELSPLKT 209
                   467777777..999**************************......89************************************************* PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                     k+v+P+a+p+i+tg+++++g+++   v++e+l +++G+g+++++  +++++s+++   v+++v+++ l+  ++d l ++l+++v+
    EGE27763.1 210 ATKIVIPAAAPTIVTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWN--QWNNLSLAN---VIFAVLLIGLMGMILDMLFAILQKKVS 291
                   *****************************************99997..677777666...899999999999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2286.96
//
Query:       EGE27764.1  [L=471]
Description: nitrate ABC transporter nitrate-binding protein NrtA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-73  245.4   0.0    9.9e-73  244.9   0.0    1.2  1  NMT1_2    NMT1-like family
      2e-08   34.5   0.0      4e-08   33.5   0.0    1.5  1  NMT1      NMT1/THI5 like


Domain annotation for each model (and alignments):
>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.9   0.0   1.1e-76   9.9e-73       2     252 ..     106     343 ..     105     344 .. 0.95

  Alignments for each domain:
  == domain 1  score: 244.9 bits;  conditional E-value: 1.1e-76
      NMT1_2   2 apekeqlklGfialtdaaplvvakekglfakeGltvelekqaswaelrdkllagelDaahvltpapllidlGiggakadmkvlaslnlnGqaitlsnkl 100
                 +pek+++ +Gf ++++a+pl++a   g++a++G++++l k a+wa +rd++++ elDaah+l+p+p++i+lG+g+ak++mkv+a  n+nGqa++++ k+
  EGE27764.1 106 KPEKKSVDIGFLPILCATPLIMADPLGYYAEQGIKANLLKRAGWALVRDQMMNRELDAAHFLAPMPIAINLGLGSAKQNMKVAAIQNTNGQALVMALKH 204
                 79*********************************************************************************************8543 PP

      NMT1_2 101 kdkkvsdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtaltsq 199
                 k     + ++ k++       k++++a++f+ s h++llry+La++Gldp++dvkl  + pp+m+anlkag+idgf+++eP+n++av++++G++++ s+
  EGE27764.1 205 K-----NNRNPKNW-------KGMTFAIPFEHSIHNYLLRYFLAEHGLDPDKDVKLRLTTPPDMIANLKAGNIDGFFGPEPFNQRAVWDKAGYIHTLSR 291
                 3.....33444444.......789*************************************************************************** PP

      NMT1_2 200 elwkdhPekvlgvredfveknpntaralvkalleAtkwldakkenraeaakll 252
                 ++w++hP++ +g++++f++++p+t  a+ +a+++A  + + k+  r+++ kll
  EGE27764.1 292 DIWNGHPCCSFGTSQSFINDYPQTFLAMYRAIIKANVMAN-KPSIRKDLSKLL 343
                 ***************************************9.999999999887 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   4.4e-12     4e-08       5     155 ..     123     278 ..     121     334 .. 0.71

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 4.4e-12
                 HHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-SEE..EE-HHHHH.HHHHTT--EEEEEEEE-S-.-EEEEEECCC--SSGGGGTTSEEEE- CS
        NMT1   5 aglyvAkekGYFkeeGldVeivepadpsdatelvasgkadfg..vsyqesll.aarakglpvvsvaallqep.lsglivlkdsgikspkDLkGkrigyv 99 
                 ++l++A   GY++e+G++ ++++ a+ + + + + + + d +  ++ ++  + +   +      vaa+ +++    +++lk ++  +pk +kG + +++
  EGE27764.1 123 TPLIMADPLGYYAEQGIKANLLKRAGWALVRDQMMNRELDAAhfLAPMPIAInLGLGSAKQNMKVAAIQNTNgQALVMALKHKNNRNPKNWKGMTFAIP 221
                 89************************9999999999888887334555554445555444445555555555045578999999*************98 PP

                 S.-TTHHHHHHHHHHHTT--GG.G-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHH CS
        NMT1 100 g.spfekallkallakdggdps.dvtlvnvggtslakalltgkvDaaiggyenwegve 155
                    ++ ++ll+ +la++g+dp+ dv+l  ++  ++++ l +g++D  + g e +++  
  EGE27764.1 222 FeHSIHNYLLRYFLAEHGLDPDkDVKLRLTTPPDMIANLKAGNIDGFF-GPEPFNQRA 278
                 76899**************996379998899999999********888.555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3793.19
//
Query:       EGE27765.1  [L=462]
Description: rubredoxin family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-39  136.1   0.1    1.8e-39  135.7   0.1    1.1  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    1.7e-21   76.0   2.0    2.9e-21   75.2   2.0    1.4  1  Rubredoxin       Rubredoxin
    1.3e-13   50.9   0.1      2e-12   47.0   0.1    2.2  1  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    4.3e-13   49.6   2.4    4.9e-10   39.8   0.1    3.2  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    1.3e-09   38.2   2.8      0.011   15.4   0.1    4.2  4  DAO              FAD dependent oxidoreductase
    5.6e-09   35.6   0.0    3.8e-07   29.6   0.0    2.3  2  K_oxygenase      L-lysine 6-monooxygenase (NADPH-requiring)
    6.7e-06   26.1   0.2    2.1e-05   24.5   0.1    1.9  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    8.2e-06   25.1   3.9     0.0035   16.5   0.2    3.1  3  GIDA             Glucose inhibited division protein A
    1.3e-05   25.5   1.8       0.02   15.2   0.2    3.1  2  TrkA_N           TrkA-N domain
    1.3e-05   24.9   0.2    5.4e-05   22.9   0.0    2.0  2  ApbA             Ketopantoate reductase PanE/ApbA
    1.5e-05   24.1   1.8    0.00081   18.4   0.1    2.1  2  Trp_halogenase   Tryptophan halogenase
    1.5e-05   24.4   0.1      0.049   12.9   0.0    2.4  2  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    2.1e-05   24.6   0.1       0.14   12.4   0.0    2.6  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
     0.0001   21.1   1.1          1    8.0   0.3    3.8  4  HI0933_like      HI0933-like protein
    0.00014   22.3   0.2       0.11   13.0   0.0    3.0  2  NAD_binding_7    Putative NAD(P)-binding
    0.00023   21.4   0.2      0.017   15.4   0.1    2.4  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00033   20.7   3.5     0.0015   18.6   0.1    2.9  3  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00094   19.4   0.1     0.0028   17.8   0.0    1.8  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
     0.0012   18.9   0.0     0.0031   17.5   0.0    1.7  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
     0.0022   18.5   3.4     0.0024   18.4   0.5    2.4  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
     0.0027   17.7   1.2         31    4.5   0.0    4.0  4  NAD_binding_9    FAD-NAD(P)-binding
     0.0068   15.7   0.1        2.1    7.5   0.0    2.5  2  Thi4             Thi4 family
     0.0095   15.3   0.0      0.024   14.0   0.0    1.6  2  ThiF             ThiF family
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.023   14.3   0.0    1.5  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
      0.012   14.9   0.0      0.035   13.5   0.0    1.7  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.045   13.6   0.0        0.1   12.5   0.0    1.5  1  Rossmann-like    Rossmann-like domain
      0.057   12.9   0.1      0.096   12.1   0.1    1.3  1  adh_short        short chain dehydrogenase
      0.092   12.1   0.0       0.14   11.5   0.0    1.3  1  Mannosyl_trans3  Mannosyltransferase putative
      0.094   11.7   0.2        3.4    6.6   0.1    2.5  2  Lycopene_cycl    Lycopene cyclase protein
        0.1   11.8   0.3        2.7    7.1   0.0    2.2  2  FAD_binding_3    FAD binding domain
        1.3    8.0   4.2        9.9    5.1   0.1    3.0  4  FAD_binding_2    FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.1   3.2e-42   1.8e-39       3     278 ..      96     369 ..      94     390 .. 0.85

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 3.2e-42
                  EEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.HHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCEE CS
                  xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeias.evvkklnqg.ielllgeevvkidpgkkkvklekkkegdee 96 
                  v+viGgG AG++a + l++   ++ +tl+ ++    + ++ ls a+ + + ++  ++ + v+  ++  ++l++++ v++id++++ v  +  + g   
   EGE27765.1  96 VIVIGGGTAGWTAIEALRKlnENLPITLITSDLGDRYMKPQLSIAISQNKTPETLITkKAVDLAQALnVTLVAQTFVLSIDTNERIVRTT--R-G--- 187
                  99*****************877*******85555578889999999999999988887333333333388888877*****999555552..2.3... PP

                  EEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-T...SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2  97 kiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllp...krivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaal 189
                  ++ y+kl+lAtG++p ++  +p++  +v+++  ++d   +l+ kl     ++i+++G+G+iG+E+A  +ak+g++vtl+ + + ++ + l+   +++l
   EGE27765.1 188 NFSYQKLILATGATPMLPpSLPAE--YVWRV-NHIDMFAKLQAKLIAkpnQHITIIGAGMIGTEIAEDIAKAGHQVTLINRDSLPMaEILPTIGGERL 282
                  6*****************888877..88777.999999999999999999************************************99999999**** PP

                  HHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 190 eealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva 278
                  ++al+  G++   ++ +++i++++  + v+  + +++ ad ++ ++G+  +++l+ + +g+   + g +v  ++l+t++p iyaiGD++
   EGE27765.1 283 RDALTGIGIDYIGNAHITDIKPQDGGY-VIIYNDKTLYADEIIASTGLILDNRLA-KGAGIDYIRCGIVVNPKTLQTSHPAIYAIGDCI 369
                  ************************955.566666669******************.*******555555555667*************9 PP

>> Rubredoxin  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   2.0   5.1e-24   2.9e-21       2      47 .]      29      74 ..      28      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 5.1e-24
                EEETTT-BEEETTTBBGGGTB-TT--GGGS-TT-BBTTTB-BGGGE CS
  Rubredoxin  2 yeCkvCgyvYdpakGdpdegiapgTkFedlPddWvCPdCgvekeqF 47
                + C++Cg++Yd++ Gdpd g+++gT+Fed+P+dW+CP Cgv+k +F
  EGE27765.1 29 FLCRACGWIYDEKLGDPDGGLPAGTRFEDIPEDWECPLCGVTKRDF 74
                67******************************************99 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.1   3.4e-15     2e-12      90     305 .]     158     366 ..      97     366 .. 0.75

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 3.4e-15
  Pyr_redox_3  90 vaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGee.k.lvkhyskv....kefhkyagqkvvViGgknSavDaAl 181
                  +a+  ++   +++ V s++ +  + +v+t++++++ +k+i+AtG    P ++    +e    v h   +     ++    +q++++iG++  + ++A 
   EGE27765.1 158 LAQALNVTLVAQTFVLSIDTN--ERIVRTTRGNFSYQKLILATGA--TPMLPPSLPAEyVwRVNHIDMFaklqAKLIAKPNQHITIIGAGMIGTEIAE 251
                  334444444456666666665..578******************9..66665443333022222322221111233345699**************** PP

  Pyr_redox_3 182 elvrkgaeVtvvtrgseiekeesdpsyslkpdi.enrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkksl 278
                  +++++g++Vt++ r+s        p +++ p+i  +rl+++++   i+ + na++++ik ++  y +  +d  k+   d++++ tG   d ++ k ++
   EGE27765.1 252 DIAKAGHQVTLINRDSL-------PMAEILPTIgGERLRDALTGIGIDYIGNAHITDIKPQDGGYVIIYND--KTLYADEIIASTGLILDNRLAKGAG 340
                  **************983.......556677776369****999855*********************9999..34455777777**********9999 PP

  Pyr_redox_3 279 feldedgrpvlteeteetnvpglflaG 305
                  +++     +v++++t +t  p ++ +G
   EGE27765.1 341 IDY-IRCGIVVNPKTLQTSHPAIYAIG 366
                  998.5566789*************998 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.5     0.016       9.4       2      29 ..      96     125 ..      95     187 .. 0.63
   2 !   39.8   0.1   8.5e-13   4.9e-10       1      73 [.     236     310 ..     236     316 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.016
                 EEEECSSHHHHHHHHHHHHTT..SEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelg..kkVtvve 29 
                 v+v+GgG+ g  + +al++l+    +t++ 
  EGE27765.1  96 VIVIGGGTAGWTAIEALRKLNenLPITLIT 125
                 79***************9998333556664 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 8.5e-13
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.E CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedg.v 73 
                 +++++G+G ig E A+ +a+ g++Vt++ r + ++   l+   +++l++ l+  gi+ + n+ ++ i+ ++ g v
  EGE27765.1 236 HITIIGAGMIGTEIAEDIAKAGHQVTLINRDSLPMaEILPTIGGERLRDALTGIGIDYIGNAHITDIKPQDGGyV 310
                 799*****************************************************************9998844 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2     0.038        22       2      29 ..      96     127 ..      95     130 .. 0.74
   2 !   10.4   0.0   0.00063      0.36     149     203 ..     152     201 ..     149     229 .. 0.76
   3 !   15.4   0.1   1.8e-05     0.011       1      31 [.     236     268 ..     236     272 .. 0.92
   4 ?    5.2   0.0     0.024        14     152     257 ..     282     381 ..     280     441 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.038
                 EEEECTSHHHHHHHHHHHHT.T....EEEEESS CS
         DAO   2 vviiGGGiiGlstAyeLarr.g....Vtllekg 29 
                 v++iGGG +G +tA e+ r+ +    +tl+ ++
  EGE27765.1  96 VIVIGGGTAG-WTAIEALRKlNenlpITLITSD 127
                 89********.5666665554356889999765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00063
                 HHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGG CS
         DAO 149 taalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGaw 203
                 t+   + a+al v+++ +t v +++ +      v rtt+g+ ++++++++a+Ga 
  EGE27765.1 152 TKKAVDLAQALNVTLVAQTFVLSIDTN---ERIV-RTTRGN-FSYQKLILATGAT 201
                 5666789*****************553...3455.666675.46799******76 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 1.8e-05
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdi 31 
                 ++ iiG+G+iG  +A + a++g  Vtl+ +++ 
  EGE27765.1 236 HITIIGAGMIGTEIAEDIAKAGhqVTLINRDSL 268
                 799******************99******9954 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.024
                 HHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH.HH.HTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE..E CS
         DAO 152 laraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd.ll.gllkeldlpispvrgqvlvlkplseklvspaailpvpe..t 246
                 l++a+   G++ + ++ +t+++ +dg+ + +++++      ad ++ ++G+  d  l +              + +v++p+++++++p ai+++ +   
  EGE27765.1 282 LRDALTGIGIDYIGNAHITDIKPQDGGYVIIYNDK-TL--YADEIIASTGLILDnRLaK---GA--G-IDYIRCGIVVNPKTLQTSHP-AIYAIGDciA 370
                 5667777799***********88875544442533.22..3699*******98874423...33..3.44566778887888877666.7888887764 PP

                 EETTTTEEEEE CS
         DAO 247 dddgrgvyvtp 257
                 +dd+   +v p
  EGE27765.1 371 IDDKPCRFVAP 381
                 54444444444 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.056        32     184     224 ..      86     126 ..      66     135 .. 0.80
   2 !   29.6   0.0   6.5e-10   3.8e-07     131     224 ..     171     265 ..     158     271 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.056
  K_oxygenase 184 rkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtr 224
                      ++++  ++V+G+G  +   +e l + +++  ++l+t+
   EGE27765.1  86 PLIGHHSETGVIVIGGGTAGWTAIEALRKLNENLPITLITS 126
                  4445889999*******999999888888888999999886 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 6.5e-10
  K_oxygenase 131 elltveskd..aegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkee..llakkriaVvGsGqSaaeifedllrrqkkvelklvtr 224
                  ++l++++++   + ++ +++ ++l+l++G +p +P+ l +     rv H + +++ +++   + +++i+++G+G  + ei+ed+++  +  +++l+ r
   EGE27765.1 171 FVLSIDTNEriVRTTRGNFSYQKLILATGATPMLPPSLPAEY-VWRVNHIDMFAKLQAKliAKPNQHITIIGAGMIGTEIAEDIAKAGH--QVTLINR 265
                  677777766556777889999*****************9866.69********9999887778899*******************9988..6777766 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.5     2e+03       2      28 ..      96     124 ..      95     181 .. 0.64
   2 !   24.5   0.1   3.7e-08   2.1e-05       1      33 [.     236     268 ..     236     285 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.5
                 EEEE--SCCHHHHHHHH..HHTT-EEEEE CS
     3HCDH_N   2 vaviGaGtmGagiaavf..asagleVvlv 28 
                 v viG Gt G    +++  ++++l+++l+
  EGE27765.1  96 VIVIGGGTAGWTAIEALrkLNENLPITLI 124
                 66888888775544333113344555544 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 3.7e-08
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdisee 33 
                 ++++iGaG++G++ia+ +a+ag++V+l+++++ 
  EGE27765.1 236 HITIIGAGMIGTEIAEDIAKAGHQVTLINRDSL 268
                 59**************************99765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0019       1.1       2      32 ..      96     128 ..      95     136 .. 0.79
   2 ?   -0.7   0.1      0.97   5.6e+02     108     150 ..     161     200 ..     139     211 .. 0.68
   3 !   16.5   0.2   6.1e-06    0.0035       2      47 ..     237     280 ..     236     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0019
                 EEEE-SSHHHHHH..HHHHHHTT--EEEEES-G CS
        GIDA   2 viViGgGhAGceA..AlaaarlGakvlLithkl 32 
                 viViGgG AG  A  Al   + +++++Lit +l
  EGE27765.1  96 VIVIGGGTAGWTAieALRKLNENLPITLITSDL 128
                 9**********9955566666677888887665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.97
                 STTEEEEES-.EEEEEECTTEEEEEEETTS-EEEECEEEE--TT CS
        GIDA 108 epnleiieee.veeliveekkvkgvvtedgetikakavviatGt 150
                   n++++ ++ v ++    ++ + +v ++   ++ ++ ++atG+
  EGE27765.1 161 ALNVTLVAQTfVLSI----DTNERIVRTTRGNFSYQKLILATGA 200
                 344444433313333....3456677777888899999****97 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 6.1e-06
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE-T CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsiggi 47 
                 +++iG+G+ G+e A  +a++G++v+Li  +   +ae+   p+igg+
  EGE27765.1 237 ITIIGAGMIGTEIAEDIAKAGHQVTLINRDSLPMAEI--LPTIGGE 280
                 89*************************5444444443..6777665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0044       2.5       1      30 [.      96     127 ..      96     198 .. 0.71
   2 !   15.2   0.2   3.4e-05      0.02       1      32 [.     237     268 ..     237     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0044
                 EEEES-SHHHHHHHHHHHH.TT..EEEEEEESS CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.gg..kdvvvidkd 30 
                 +i+iG G+ G + +e L++ ++  + +++i +d
  EGE27765.1  96 VIVIGGGTAGWTAIEALRKlNEnlP-ITLITSD 127
                 79*****************876855.9999987 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3.4e-05
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdee 32 
                 i iiG+G +G+++ae + + g+ +v++i +d  
  EGE27765.1 237 ITIIGAGMIGTEIAEDIAKaGH-QVTLINRDSL 268
                 67*****************555.8****99974 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.3   1.3e+03      44      85 ..     125     162 ..      96     170 .. 0.63
   2 !   22.9   0.0   9.4e-08   5.4e-05       1      34 [.     237     271 ..     237     277 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.3
                 EETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHH CS
        ApbA  44 tseggeeilrppealsaeekselepidlvivtvKayqteeal 85 
                 ts+ g+++++p+ +++ +    + +    ++t Ka ++++al
  EGE27765.1 125 TSDLGDRYMKPQLSIAIS----QNKTPETLITKKAVDLAQAL 162
                 333356666666666655....33444456677777777766 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 9.4e-08
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rle 34 
                 i+i+GaG iG+ +a  +akag++vtli+r+   ++
  EGE27765.1 237 ITIIGAGMIGTEIAEDIAKAGHQVTLINRDSlPMA 271
                 89***************************986555 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.4e-06   0.00081       2      34 ..      96     127 ..      95     131 .. 0.91
   2 ?    5.1   0.2     0.014       8.2       2      39 ..     237     271 ..     236     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-06
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlvese 34 
                     ++++GGGtaGw+a  al+k   ++l +tl+ s+
      EGE27765.1  96 VIVIGGGTAGWTAIEALRKLN-ENLPITLITSD 127
                     89***************9988.77******986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.014
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS--- CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlveseeigtv 39 
                     i+i+G+G  G   A  +aka+   ++vtl++ + +++ 
      EGE27765.1 237 ITIIGAGMIGTEIAEDIAKAG---HQVTLINRDSLPMA 271
                     89*******************...99******999976 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   8.5e-05     0.049      28      54 ..      93     119 ..      82     160 .. 0.85
   2 !    9.1   0.0    0.0012      0.71      28      61 ..     234     267 ..     214     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.5e-05
                  --EEEEESTSHHHHHHHHHHHHTT-EE CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakV 54 
                  +  v+viGgG+aG+ Ai++ ++l+ + 
   EGE27765.1  93 ETGVIVIGGGTAGWTAIEALRKLNENL 119
                  6679***************99998765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0012
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrp 61 
                  + ++++iG+G+ G++ ++  ++ g +Vt+++ ++
   EGE27765.1 234 NQHITIIGAGMIGTEIAEDIAKAGHQVTLINRDS 267
                  4689************************998765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0017      0.99       1      24 [.      98     123 ..      98     129 .. 0.82
   2 !   12.4   0.0   0.00024      0.14       1      27 [.     239     265 ..     239     269 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0017
                    EE--SHHHHHHHHHHHCC..TEEEEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka..gfdvll 24 
                    ++G+G +G +a  +L+k   ++ ++l
     EGE27765.1  98 VIGGGTAGWTAIEALRKLneNLPITL 123
                    8***************9533666666 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00024
                    EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllek 27 
                    I+GaG+ G  +A  +akag++v+l+ +
     EGE27765.1 239 IIGAGMIGTEIAEDIAKAGHQVTLINR 265
                    9***********************965 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.017        10       3      21 ..      96     114 ..      94     127 .. 0.75
   2 ?    4.3   0.0     0.024        14     119     165 ..     159     201 ..     147     210 .. 0.82
   3 !    8.0   0.3    0.0018         1       2      39 ..     236     273 ..     235     282 .. 0.84
   4 ?   -1.4   0.0       1.3   7.4e+02     117     163 ..     284     328 ..     280     329 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.017
                  EEEE--SHHHHHHHHHHHH CS
  HI0933_like   3 viviGgGaAGlmaAisaak 21 
                  viviGgG AG  a ++++k
   EGE27765.1  96 VIVIGGGTAGWTAIEALRK 114
                  9*********876555544 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.024
                  HHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 119 lkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGl 165
                  +++ +v+l  +t v s+++  ++   v+t ++++++ +kl+lAtG +
   EGE27765.1 159 AQALNVTLVAQTFVLSIDT--NE-RIVRT-TRGNFSYQKLILATGAT 201
                  5778999999999**9944..44.45778.89*************86 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0018
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39 
                  ++ +iG+G  G   A+ +ak+g++V+l+++ + +   i
   EGE27765.1 236 HITIIGAGMIGTEIAEDIAKAGHQVTLINRDSLPMAEI 273
                  689*************************9887665555 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.3
                  HHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 117 kelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                   +l+  g+++  + ++++++ +++g + + + ++++l ad+++ +tG
   EGE27765.1 284 DALTGIGIDYIGNAHITDIKPQDGG-YVIIY-NDKTLYADEIIASTG 328
                  5666678888889999999776666.88888.99********99988 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.031        18       8      41 ..      94     134 ..      88     200 .. 0.65
   2 !   13.0   0.0   0.00019      0.11       7      40 ..     234     267 ..     230     331 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.031
  NAD_binding_7   8 kkvlvvGgGevAarkvrklle..agakvtvvapev.....k 41 
                      v+v+GgG+ + + ++ l +  ++  +t+++ ++     k
     EGE27765.1  94 TGVIVIGGGTAGWTAIEALRKlnENLPITLITSDLgdrymK 134
                    5699*********9999997732457789998886543321 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00019
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapev 40 
                    ++++ ++G+G ++++ ++ +++ag +vt++  ++
     EGE27765.1 234 NQHITIIGAGMIGTEIAEDIAKAGHQVTLINRDS 267
                    689***************************9985 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.11        62       1      33 [.      96     127 ..      96     173 .. 0.88
   2 !   15.4   0.1   2.9e-05     0.017       1      47 [.     237     280 ..     237     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.11
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESS CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrs 33 
                      v++iG+G  G+ ++e l + ++    it+++ +
       EGE27765.1  96 VIVIGGGTAGWTAIEALRKLNENL-PITLITSD 127
                      79****************999886.88888766 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.9e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTT CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgv 47 
                      + iiGaG++G  +ae++a+ ++   ++t++ r+   +++++ ++ g+
       EGE27765.1 237 ITIIGAGMIGTEIAEDIAKAGH---QVTLINRDSLPMAEILPTIGGE 280
                      679****************997...8******988888777666555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.47   2.7e+02       8      33 ..      89     114 ..      82     122 .. 0.83
   2 !   18.6   0.1   2.6e-06    0.0015      12      57 ..     234     278 ..     224     289 .. 0.82
   3 ?   -1.8   0.0       5.1   2.9e+03      48      85 ..     385     422 ..     383     429 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.47
                   S..TT-EEEEES-SHHHHHHHHHHHC CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLla 33 
                   ++++e  v++iG G  +  ++++L +
    EGE27765.1  89 GHHSETGVIVIGGGTAGWTAIEALRK 114
                   6778899**********999999975 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.6e-06
                   T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelk 57 
                   ++++++iGaG++++++a+ ++++g + v+ +NR+   ++e+   ++
    EGE27765.1 234 NQHITIIGAGMIGTEIAEDIAKAGHQ-VTLINRDSLPMAEILPTIG 278
                   689******************99998.******9877666666555 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 5.1
                   HHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSS CS
  Shikimate_DH  48 rakelaeelkgeeiealkleelkellaeadvvisatas 85 
                   +a+++a+++++      + ++   +l+   ++isat+ 
    EGE27765.1 385 QAAAIAHHISDMAHAGYQHKSPLIRLKTKSIIISATGE 422
                   56666666655544444555555578889999999975 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       9.9   5.7e+03      72      99 ..      83     111 ..      80     122 .. 0.63
   2 !   17.8   0.0   4.9e-06    0.0028       2      38 ..     237     273 ..     236     294 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 9.9
                    HHHS.HCCC--TT-EEEE-S---HHHHHH CS
  NAD_binding_2  72 vieg.llealkkgdilidgstsspedtre 99 
                    v++  + ++ + g i+i g+t+  ++ + 
     EGE27765.1  83 VVTPlIGHHSETGVIVIGGGTAGWTAIEA 111
                    55552345667788888888876655544 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 4.9e-06
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveel 38 
                    i +iG G++G+++a+ ++kag++v+++nr++  + e+
     EGE27765.1 237 ITIIGAGMIGTEIAEDIAKAGHQVTLINRDSLPMAEI 273
                    899**************************98766665 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.3e-06    0.0031       2      37 ..     237     272 ..     236     280 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.3e-06
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHH CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvreeeliee 37 
                     i+++GaG+ Gt +A  +a++gh+v+l+ r++  + e
      EGE27765.1 237 ITIIGAGMIGTEIAEDIAKAGHQVTLINRDSLPMAE 272
                     9**************************999865555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       3.1   1.8e+03       4      29 ..      98     124 ..      96     186 .. 0.52
   2 !   18.4   0.5   4.2e-06    0.0024       2      42 ..     237     273 ..     236     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 3.1
                    EETTSHHHHHHHHHHHHTTS.-GGCEE CS
  F420_oxidored   4 iiGaGnmgealasgllaaga.qpheiv 29 
                    +iG+G  g + ++ l + ++  p  ++
     EGE27765.1  98 VIGGGTAGWTAIEALRKLNEnLPITLI 124
                    566666666666666666633222222 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 4.2e-06
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHH CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeel 42 
                    i iiGaG +g  +a+ +++ag   h+++++ +r+   ++e+
     EGE27765.1 237 ITIIGAGMIGTEIAEDIAKAG---HQVTLI-NRDSLPMAEI 273
                    89*******************...****99.7766555555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.054        31       2      31 ..      98     124 ..      97     151 .. 0.88
   2 ?    0.1   0.0       1.2   6.9e+02     114     155 ..     161     200 ..     149     201 .. 0.64
   3 ?    4.2   0.1     0.067        39       2      32 ..     239     264 ..     238     274 .. 0.79
   4 ?    4.2   0.0     0.069        40     114     154 ..     288     328 ..     280     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.054
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlf 31 
                    ++G+G +G +++e+L + +   ++l itl+
     EGE27765.1  98 VIGGGTAGWTAIEALRKLN---ENLPITLI 124
                    8**************9994...77777765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.2
  NAD_binding_9 114 gvtvevhra.evvdleeradgqavlladgaslaadaVvLAlGh 155
                     ++v+++ +  v+++++++   +++ ++  ++ +++++LA+G 
     EGE27765.1 161 ALNVTLVAQtFVLSIDTNE---RIVRTTRGNFSYQKLILATGA 200
                    4566665441455555433...356677778999*******95 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.067
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfd 32 
                    i+GaG+ G+ ++e +++       +++tl++
     EGE27765.1 239 IIGAGMIGTEIAEDIAKAG-----HQVTLIN 264
                    9**************9984.....5555555 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.069
  NAD_binding_9 114 gvtvevh.raevvdleeradgqavlladgaslaadaVvLAlG 154
                    g+ ++++ +a+++d++++++g+  +  ++++l ad+++  +G
     EGE27765.1 288 GIGIDYIgNAHITDIKPQDGGYV-IIYNDKTLYADEIIASTG 328
                    56666665789*******99985.5677789999*9999998 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0036       2.1      15      50 ..      91     127 ..      83     131 .. 0.85
   2 ?    5.4   0.0     0.016       9.5      13      49 ..     230     265 ..     220     271 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0036
                 HTEEEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESS CS
        Thi4  15 yaesDvvivGaGssGLtaayylakk.pdlkvailers 50 
                 + e+ v+++G+G++G ta   l k   +l ++++ + 
  EGE27765.1  91 HSETGVIVIGGGTAGWTAIEALRKLnENLPITLITSD 127
                 57899*************9999987688988888765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.016
                 HHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  13 lkyaesDvvivGaGssGLtaayylakkpdlkvailer 49 
                 +   ++ + i+GaG  G   a  +ak+ + +v++++r
  EGE27765.1 230 IAKPNQHITIIGAGMIGTEIAEDIAKA-GHQVTLINR 265
                 555567899******************.999999987 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       8.6     5e+03      76     100 ..     107     131 ..     104     137 .. 0.84
   2 !   14.0   0.0   4.2e-05     0.024      13      51 ..     226     266 ..     215     270 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 8.6
                 HHHHHHHHT-TTSEEEEEES-CCGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  76 vaaealqeinpdveveavteritde 100
                 +a eal+++n ++ ++ +t +++d+
  EGE27765.1 107 TAIEALRKLNENLPITLITSDLGDR 131
                 6789999999999999999988775 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4.2e-05
                 HHHHHT...SEEEEE--SHHHHHHHHHHHHHTTTEEEEEESS CS
                 xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  13 qekLrd...skvllvGaGglGsellknLalsGvgkltlvDnD 51 
                 q+kL +   +++ ++GaG +G e+++++a++G  ++tl+  D
  EGE27765.1 226 QAKLIAkpnQHITIIGAGMIGTEIAEDIAKAGH-QVTLINRD 266
                 4444334669**********************5.67777666 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     4e-05     0.023       2      33 ..     236     267 ..     235     274 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4e-05
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-H CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDide 33 
                     +i++iG+G +G   a  +a++gh+v+++  d+
      EGE27765.1 236 HITIIGAGMIGTEIAEDIAKAGHQVTLINRDS 267
                     79*************************98876 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.1e-05     0.035      36      69 ..     234     267 ..     217     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.1e-05
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSH CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrsk 69 
                   ++ + iiG+G IG+++a+ +++ g +v+ ++r  
    EGE27765.1 234 NQHITIIGAGMIGTEIAEDIAKAGHQVTLINRDS 267
                   68899***********************999975 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00018       0.1      11      40 ..     235     264 ..     226     272 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
  Rossmann-like  11 lsvGiisaGrvGtalgaaleraghvvvgis 40 
                     ++ ii+aG +Gt +++ +++agh+v+ i+
     EGE27765.1 235 QHITIIGAGMIGTEIAEDIAKAGHQVTLIN 264
                    5689**********************9876 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00017     0.096       2      47 ..     236     280 ..     235     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee 47 
                 ++ ++Ga+  IG +ia+ +ak+G +v++++r + +++e++  ++ e
  EGE27765.1 236 HITIIGAG-MIGTEIAEDIAKAGHQVTLINRDSLPMAEILPTIGGE 280
                 67888887.7*************************99999888876 PP

>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00024      0.14       3      72 ..      95     165 ..      93     202 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
  Mannosyl_trans3   3 GIVisgggkesllalrlIkvLralgnkLPIeivikkeelekefcekilpaa..............eepkqevwfvnakcvlned 72 
                      G++++ggg   +    +I++Lr+l+ +LPI ++    +l ++ ++  l++a                       v++ + ln +
       EGE27765.1  95 GVIVIGGGTAGWT---AIEALRKLNENLPITLITS--DLGDRYMKPQLSIAisqnktpetlitkkA--------VDLAQALNVT 165
                      7777777777777...9****************98..66555555555555566544444333330........3333333333 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.11        62       2      30 ..      96     124 ..      95     135 .. 0.81
   2 ?    6.6   0.1     0.006       3.4       2      32 ..     237     265 ..     236     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvli 30 
                    v+viG+G Ag    + l + + +l ++li
     EGE27765.1  96 VIVIGGGTAGWTAIEALRKLNENLPITLI 124
                    8*********9988888777777877777 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.006
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvliea 32 
                    + +iGaG  g  +A+ +  ak+g +v+li+ 
     EGE27765.1 237 ITIIGAGMIGTEIAEDI--AKAGHQVTLINR 265
                    679**************..9********953 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.11        63       1      21 [.      93     113 ..      93     119 .. 0.85
   2 ?    7.1   0.0    0.0047       2.7       4      34 ..     237     267 ..     234     276 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.11
                    EEEEEEE--SHHHHHHHHHHH CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLs 21 
                    et V+++G+G aG ++   L+
     EGE27765.1  93 ETGVIVIGGGTAGWTAIEALR 113
                    588**********99877665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0047
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    + I+GaG  G   a   ++aG +v+l+++ s
     EGE27765.1 237 ITIIGAGMIGTEIAEDIAKAGHQVTLINRDS 267
                    67**************************986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.017       9.9       2      14 ..      96     108 ..      95     126 .. 0.82
   2 ?   -2.3   0.0       3.1   1.8e+03     172     204 ..     163     203 ..     141     218 .. 0.65
   3 ?    3.2   0.1     0.064        37       3      30 ..     238     265 ..     236     268 .. 0.91
   4 ?   -2.5   0.0       3.4     2e+03     371     402 ..     343     369 ..     338     372 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.017
                    EEEE--SHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaA 14 
                    viViG+G AG +A
     EGE27765.1  96 VIVIGGGTAGWTA 108
                    9*********997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.1
                    T...EEEEEEEEETTTTCEE.....EEEESEEEE-----GG CS
  FAD_binding_2 172 g...rvtGavvenpesgrev.....rirakavvlatgGfgr 204
                    +    + + v++ ++++r+v      +  ++++latg+ + 
     EGE27765.1 163 NvtlVAQTFVLSIDTNERIVrttrgNFSYQKLILATGATPM 203
                    23346667777777777777666666677788888888774 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.064
                    EEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvek 30 
                     +iG+G+ G   A  +a+aG++v++++ 
     EGE27765.1 238 TIIGAGMIGTEIAEDIAKAGHQVTLINR 265
                    59***********************986 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 3.4
                    EES-EEEBETTSBESTTEEESSBTEEE-STCE CS
  FAD_binding_2 371 ytmgGvetdengrvldadgqpipGLYAaGeva 402
                    y  +G+++++++       + +p  YA+G ++
     EGE27765.1 343 YIRCGIVVNPKTLQ-----TSHPAIYAIGDCI 369
                    77789999987655.....69999*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 3493.86
//
Query:       EGE27766.1  [L=390]
Description: putative acyl-CoA dehydrogenase FadE [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.024   14.9   0.1      0.055   13.7   0.1    1.6  1  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
      0.095   12.9   0.0       0.18   12.0   0.0    1.5  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.2e-06     0.055      55     127 ..     295     367 ..     264     370 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.2e-06
                    HHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGBTT-HHHHHHHHHHHHC CS
  Acyl-CoA_dh_2  55 ralleraaaraealaaagkevtvedraearraaalavelaiaavdalfeaaGgsalrkesplqRlwRDahaaa 127
                    ++ l + ++r+  la++  e   +  +e   + +  +el+ +a++a     G++++++++  qR+ R+ah +a
     EGE27766.1 295 QTQLDALIERTLVLAKTPFETHKDFFLEVLDTRIQGAELSLQATQASLLHQGAKGYLMSANPQRRIREAHFVA 367
                    4444444444333333333333333444444567789*********************************986 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     2e-05      0.18      18      96 ..     150     230 ..     132     231 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2e-05
                    -EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEE.TS-------EEEEEEE.....GGGEEE-----BSS-TTS-EEEEEEE. CS
  Acyl-CoA_dh_M  18 ttaaerdggeyvlnGeKiwitnaaiatlalvlar.tekpdrarglslflvp...rdapgvsvrrieeklGlrglptgelvfed 96 
                       a+r +g+yv++G+  wi++ a ++++  +a  +++ + ++++ +fl+    +++ + ++++ ++  G+ g +t ++v++d
     EGE27766.1 150 L-RAQRVNGGYVVSGTLPWISHIAPNQYCGAIASvEHGGQIDKDI-FFLLSfdeARKDNWQLNPCPTFSGMEGSSTWQIVLTD 230
                    3.36778889************************76555556777.5555544566669**************9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2975.42
//
Query:       EGE27767.1  [L=181]
Description: AhpD-like alkylhydroperoxidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-08   34.3   0.7    5.7e-08   32.7   0.2    2.0  2  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.2   3.2e-12   5.7e-08       1      68 [.      41     106 ..      41     122 .. 0.79
   2 ?   -0.5   0.0     0.076   1.4e+03       5      32 ..     114     139 ..     110     157 .. 0.60

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3.2e-12
                 HHHHHHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHH CS
         CMD   1 pellraltalreallareggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaa 68 
                 p++l+++ +l++    r++ L++ e e+++++++a ngc++Cv+ Ht+a  +  + e+ ++++    a
  EGE27767.1  41 PQALEMYQELGKMNS-RNS-LTAEEIEVVQITAAAHNGCDFCVAGHTKAGTKLQMPENVLNALRGRTA 106
                 667777777666665.566.*******************************99999999986655544 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.076
                 HHHHHHHHHHCCGSSTS-HHHHHHHHHH CS
         CMD   5 raltalreallareggLdpkereLiala 32 
                 +al+++ + l+ r g     + eL+a+ 
  EGE27767.1 114 QALAQFTMQLIDRRG--KVSDDELAAVK 139
                 556666666664333..33444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1424.99
//
Query:       EGE27768.1  [L=649]
Description: ABC transporter ATPase subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-46  156.3   6.1    1.2e-22   81.0   0.0    4.3  4  ABC_tran       ABC transporter
    4.1e-29  100.4   5.1    4.1e-29  100.4   5.1    2.8  3  ABC_tran_Xtn   ABC transporter
    2.6e-13   50.5  14.2    0.00041   20.3   0.1    4.4  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
      2e-07   31.1   0.1     0.0041   17.2   0.0    3.1  2  MMR_HSR1       50S ribosome-binding GTPase
    3.4e-07   30.3   0.2      0.025   14.5   0.0    2.8  2  RsgA_GTPase    RsgA GTPase
    1.8e-06   27.6   5.4      0.021   14.6   0.3    3.1  2  AAA_29         P-loop containing region of AAA domain
    2.8e-06   26.5   0.3       0.05   12.6   0.0    2.7  2  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
    3.4e-06   26.7   8.1      0.098   12.1   0.0    4.1  4  SMC_N          RecF/RecN/SMC N terminal domain
    0.00028   21.5  29.4      0.047   14.2   0.2    4.2  4  AAA_23         AAA domain
    0.00041   20.8   0.5        1.5    9.2   0.0    3.5  3  AAA            ATPase family associated with various cellular
    0.00077   19.7   6.3    0.00077   19.7   6.3    2.7  2  ABC_tran_CTD   ABC transporter C-terminal domain
     0.0011   18.7   0.2        1.1    9.0   0.1    2.5  2  AAA_24         AAA domain
     0.0013   19.3   0.2        1.7    9.2   0.0    3.4  2  AAA_18         AAA domain
     0.0019   18.0   1.6        1.8    8.2   0.0    3.8  2  AAA_30         AAA domain
     0.0025   17.7   0.1       0.84    9.5   0.2    2.7  2  NTPase_1       NTPase
     0.0027   17.0   0.0        2.4    7.3   0.0    2.7  2  NB-ARC         NB-ARC domain
     0.0029   17.8   3.4       0.69   10.1   0.0    3.9  4  AAA_33         AAA domain
     0.0033   17.8   4.1        1.6    9.1   0.0    3.8  4  AAA_16         AAA ATPase domain
     0.0038   16.9   0.1       0.15   11.7   0.0    2.7  2  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
     0.0043   16.2   0.2        1.3    8.0   0.0    2.5  2  T2SSE          Type II/IV secretion system protein
     0.0047   16.1   0.1        1.1    8.3   0.0    2.5  2  DUF815         Protein of unknown function (DUF815)
  ------ inclusion threshold ------
      0.018   15.1   4.8       0.64   10.1   0.0    3.7  4  Dynamin_N      Dynamin family
      0.022   14.1   1.6      0.032   13.6   0.1    2.1  2  Gtr1_RagA      Gtr1/RagA G protein conserved region
      0.023   14.7   0.2      0.061   13.3   0.2    1.6  1  NAD_binding_9  FAD-NAD(P)-binding
      0.028   13.9   0.3        1.3    8.5   0.1    2.4  2  AAA_7          P-loop containing dynein motor region
      0.034   13.8   0.7       0.39   10.4   0.0    2.7  2  Guanylate_kin  Guanylate kinase
       0.04   13.2   0.1        6.9    5.8   0.0    2.7  2  Septin         Septin
       0.05   13.8   0.2         16    5.7   0.1    2.9  2  Roc            Ras of Complex, Roc, domain of DAPkinase
       0.06   12.9   1.0         10    5.7   0.1    2.8  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.083   12.4   0.9        8.4    5.9   0.0    3.3  3  GTP_EFTU       Elongation factor Tu GTP binding domain
       0.09   13.2   1.9         14    6.1   0.0    3.2  3  RNA_helicase   RNA helicase
        0.1   12.6   0.1         16    5.5   0.0    2.5  2  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
       0.11   12.5   0.0         15    5.7   0.0    3.0  2  AAA_14         AAA domain
       0.13   11.8   1.7        1.4    8.4   0.4    2.5  2  FeoB_N         Ferrous iron transport protein B
       0.16   11.7   0.6         11    5.7   0.0    2.5  2  MukB           MukB N-terminal
       0.35   11.1  23.1       0.03   14.6  14.9    2.1  2  ATG16          Autophagy protein 16 (ATG16)
       0.38   10.8   0.0       0.38   10.8   0.0    4.0  4  DUF87          Helicase HerA, central domain
       0.43   10.5   7.9        7.9    6.4   0.2    3.8  3  NACHT          NACHT domain
        0.5   10.6   0.0        0.5   10.6   0.0    3.3  2  AAA_28         AAA domain
       0.51   10.6  14.6       0.47   10.7   0.1    4.1  3  AAA_22         AAA domain
          1    9.4   5.4        2.6    8.1   0.0    3.3  3  AAA_5          AAA domain (dynein-related subfamily)
        2.3    8.6   5.8        2.7    8.4   2.9    2.6  2  CCDC-167       Coiled-coil domain-containing protein 167
          6    7.4   7.7        4.9    7.6   1.1    2.7  2  NBD_C          Nucleotide-binding C-terminal domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   2.8e-25   1.2e-22       2     137 .]      18     177 ..      17     177 .. 0.78
   2 ?    1.2   0.1       1.2     5e+02      38     103 ..     219     280 ..     207     295 .. 0.56
   3 !   72.6   0.0   1.1e-22   4.4e-20       1     137 []     327     458 ..     327     458 .. 0.76
   4 ?    0.9   0.7       1.5   6.2e+02      48     103 ..     565     627 ..     514     643 .. 0.70

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 2.8e-25
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE.............EETTCEGGG.............B-HHHCCHCEEEE-SS--S-TTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGei.............lldgkdlke.............qeleslrkeigvlpqepqlfpel 74 
                 ++++++l++g+k++++G+nG+GKStL+++++g ++ + G+i             +                      ++e+++ ++++ +q++  + ++
  EGE27768.1  18 SDINFQLHKGQKIGLTGNNGTGKSTLFATILGTHNTDVGSIslpeswqiahmaqE-------VsatamsaidyvlsGDEEWWQLNWQINHQTSLTDGQI 109
                 689**************************************66665555544441.......0333444455577777788888888888875444444 PP

                 B.HHHH.......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 x.xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  75 t.vren.......esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   ++++          ++++ +ls lg  e +++++    s +SgG++ r+ lar+l+ ++++lllDEpt+
  EGE27768.1 110 ApMYQRfeeidgyRTPAKAAMILSGLGFGEADHSKQ---VSMFSGGWRMRLNLARTLMHRADVLLLDEPTN 177
                 434444777888878888999999999999666654...8******************************8 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 1.2
                 SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHHHHHSTTGGTTCBGES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  38 teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeiekalsklglkelkdtvvk 103
                 ++G+i+l   +      ++ r + + l qe+q f++ ++ +           +          k    + +++++k
  EGE27768.1 219 EQGQITLYTGNY----SQFIRTRAERLAQEQQAFEKQQAVRAhledyirrfrA----------KATKAKQAQSRIK 280
                 667776654443....4478888888888888888877444414444444442..........3333333333332 PP

  == domain 3  score: 72.6 bits;  conditional E-value: 1.1e-22
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSB.HHHH.......HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx.xxxx.......xxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpelt.vren.......esdeeiekal 89 
                 l +++l + ++ +++i+G nGaGKStL+k+l g+l    G  ++               ++g++ q+  ++l+++ t +          +sd+++ ++l
  EGE27768.1 327 LTKINLRITPDARLGILGANGAGKSTLIKALVGELPLIDGIYKVS-----------ETLQLGYFNQHqmDSLDDDATpM-IMlrrlsgqTSDANLRAFL 413
                 5789********************************999998544...........33444444444444444444321.1123344457777777777 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   +g ++   ++++++ + +SgG++ r++la +++++p++l+lDEpt+
  EGE27768.1 414 GGFGFQG---ERIDTQSRLFSGGERARLMLALLVWQRPNVLILDEPTN 458
                 7777555...9999999******************************8 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 1.5
                 EGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.......HHHTCHHHHHHHSTTGGTTCBGES CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  48 dlkeqeleslrkeigvlpqe.pqlfpeltvren.......esdeeiekalsklglkelkdtvvk 103
                 +++ +++  lrk+i+ l+    +l ++l + en       ++d+  +++l+kl+ +++ ++ ++
  EGE27768.1 565 QIR-EQTAPLRKQIAKLEDRlGKLSDTLAILENelsdarlYEDDYKSELLDKLNHQNTLKSQID 627
                 222.466677888888887766677777777888777777555556677777776666666654 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   5.1   9.8e-32   4.1e-29       1      76 [.     216     291 ..     216     301 .. 0.93
   2 ?    3.2   0.2      0.21        88       7      70 ..     503     531 ..     499     547 .. 0.51
   3 ?   -2.1   0.6       9.6     4e+03      24      43 ..     561     580 ..     552     588 .. 0.45

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 9.8e-32
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekp 76 
                   +++e+g++t Y+GnYs+++++++erl+q+q+a+ekqq+ +++le++I+rfraka+kakqaqsr+k+L+++ ++ + 
    EGE27768.1 216 LHIEQGQITLYTGNYSQFIRTRAERLAQEQQAFEKQQAVRAHLEDYIRRFRAKATKAKQAQSRIKQLDRMTQLSPV 291
                   69********************************************************************999877 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.21
  ABC_tran_Xtn   7 klteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLekl 70 
                   ++te+ G+  +y e+ ++++++ q+                                    +k+
    EGE27768.1 503 RATEFVGDMADYAEHLRQAKKAHQA-----------------------------------NQKM 531
                   5555555555555444433333322...................................2222 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 9.6
  ABC_tran_Xtn  24 erleqqqkayekqqkeikkl 43 
                   ++ +q +++ +   k+i+kl
    EGE27768.1 561 KKNAQIREQTAPLRKQIAKL 580
                   22222222222223333333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00028      0.12       3      37 ..      31      57 ..      30      95 .. 0.78
   2 !   10.0   0.6    0.0013      0.55     258     302 ..     167     208 ..     153     209 .. 0.75
   3 !   14.7   1.2   4.9e-05     0.021       3      19 ..     341     357 ..     340     380 .. 0.90
   4 !   20.3   0.1   9.8e-07   0.00041     223     302 ..     416     489 ..     375     491 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00028
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegltdels 37
                +l+G Ng+GKS+L+ ++ +        ++ td+ s
  EGE27768.1 31 GLTGNNGTGKSTLFATILG--------THNTDVGS 57
                69*************9954........34444444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0013
      AAA_21 258 gsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                 +++ll+DEp n+L+  ++  l e+l + +     ++l +H+  +l
  EGE27768.1 167 ADVLLLDEPTNHLDLDAIFWLEEWLLKFEG---LILLISHDQAFL 208
                 28*************998888888855555...467777776655 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 4.9e-05
      AAA_21   3 vliGpNgsGKSnLLdal 19 
                 ++ G+Ng+GKS+L++al
  EGE27768.1 341 GILGANGAGKSTLIKAL 357
                 589*************9 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 9.8e-07
      AAA_21 223 flengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                 f   g + ++++r +S G +  l l++++++++    +l++DEp n+L+ ++   l+  l + +     +il++H+  l+
  EGE27768.1 416 FGFQGERIDTQSRLFSGGERARLMLALLVWQRP---NVLILDEPTNHLDLQMRNALMLALQDFAG---ALILVSHDRDLI 489
                 555667778899999*****9989999999888...89*******************99988877...9******95443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1    0.0011      0.48       1      26 [.      29      55 ..      29      76 .. 0.86
   2 !   17.2   0.0   9.8e-06    0.0041       2      42 ..     340     380 ..     339     538 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0011
                EEEEEESTTSSHHHHHHHHHTS.TEEE CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge.kaiv 26
                ++++ G+  +GKStL+ +++g+ +  v
  EGE27768.1 29 KIGLTGNNGTGKSTLFATILGThNTDV 55
                589****************99744455 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 9.8e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk 42 
                  +i+G   +GKStLi+al+ge   +  +  +  + + g ++
  EGE27768.1 340 LGILGANGAGKSTLIKALVGELPLIDGIYKVSETLQLGYFN 380
                 69******************977776666666666666555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     6e-05     0.025      91     131 ..      18      59 ..       3      67 .. 0.87
   2 !   12.7   0.0   0.00021      0.09     104     137 ..     342     377 ..     326     384 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6e-05
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  ++++ +l++ + + l G+ G GKStL  ++l+++++ +g++s
   EGE27768.1  18 SDINFQLHKgQKIGLTGNNGTGKSTLFATILGTHNTDVGSIS 59 
                  67777887768999*************************998 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00021
                  EECSTTSSHHHHHHHHCTT---..--S--------- CS
  RsgA_GTPase 104 lvGqSGvGKStLinallpelel..ktgevseklgrG 137
                  ++G  G+GKStLi+al++el l   + +vse+l+ G
   EGE27768.1 342 ILGANGAGKSTLIKALVGELPLidGIYKVSETLQLG 377
                  79****************975411456677766665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3     5e-05     0.021      15      39 ..      20      44 ..      15      52 .. 0.76
   2 !   14.2   0.1   6.4e-05     0.027      24      42 ..     339     357 ..     328     359 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5e-05
      AAA_29 15 htieidlkg.atlltGpsGsGKSTll 39
                  ++++  g  + ltG++G+GKSTl+
  EGE27768.1 20 INFQLHK-GqKIGLTGNNGTGKSTLF 44
                4566664.44889************8 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 6.4e-05
      AAA_29  24 atlltGpsGsGKSTllDAi 42 
                    + G++G+GKSTl+ A+
  EGE27768.1 339 RLGILGANGAGKSTLIKAL 357
                 45699***********886 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00034      0.14      15      48 ..      13      46 ..       5      57 .. 0.81
   2 !   12.6   0.0   0.00012      0.05      18      53 ..     326     361 ..     311     370 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
                HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHH CS
        MeaB 15 akellerllakaGraqvvGltGvPGaGkstlvea 48
                 + l++ +  +  + q++GltG  G+Gkstl   
  EGE27768.1 13 GRLLFSDINFQLHKGQKIGLTGNNGTGKSTLFAT 46
                566777888888899***************9765 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00012
                 HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB  18 llerllakaGraqvvGltGvPGaGkstlvealglel 53 
                 +l+++  +     ++G+ G  GaGkstl++al+ el
  EGE27768.1 326 MLTKINLRITPDARLGILGANGAGKSTLIKALVGEL 361
                 6777777777788******************98776 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0035       1.5      27      50 ..      30      50 ..      17     100 .. 0.83
   2 ?   -2.3   0.0         6   2.5e+03     147     185 ..     155     193 ..     145     215 .. 0.74
   3 !    8.9   0.0    0.0023      0.94      28      44 ..     341     357 ..     328     361 .. 0.86
   4 !   12.1   0.0   0.00024     0.098     135     212 ..     428     500 ..     393     506 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0035
                EEEEESTTSSHHHHHHHHHHHCTT CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnlldAilFvLGe 50
                  ++G+NG GKs l+  i   LG+
  EGE27768.1 30 IGLTGNNGTGKSTLFATI---LGT 50
                4589************99...774 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6
                 HHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 147 laLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                 + L +A   +++a + llDe   +LD   +  + e l +
  EGE27768.1 155 MRLNLARTLMHRADVLLLDEPTNHLDLDAIFWLEEWLLK 193
                 567788888889999999**9999998877766666555 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0023
                 EEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAi 44 
                  i+G+NG+GKs l+ A+
  EGE27768.1 341 GILGANGAGKSTLIKAL 357
                 599************98 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 0.00024
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC.CC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreeml.ekadklvgvt 212
                  l+SgGe++ ++laLl      ++  + +lDe   +LD + ++++   l+       +i +s++++++ + +d+l+ v+
  EGE27768.1 428 RLFSGGERARLMLALL----VWQRPNVLILDEPTNHLDLQMRNALMLALQDFA--GALILVSHDRDLImSVCDELLLVF 500
                 479******9999988....456667889**************9999998888..778888887776505558887776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   1.0    0.0006      0.25      15      39 ..      20      47 ..      14      49 .. 0.74
   2 ?    3.0   0.5       0.3   1.3e+02     136     179 ..     239     282 ..     183     289 .. 0.53
   3 !   14.2   0.2   0.00011     0.047      24      39 ..     342     357 ..     330     359 .. 0.92
   4 ?    5.2   9.3     0.063        26     128     199 ..     532     633 ..     503     641 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0006
      AAA_23 15 idF...skgltlItGpNGaGKTTildAi 39
                i+F   +     +tG+NG+GK+T++  i
  EGE27768.1 20 INFqlhKGQKIGLTGNNGTGKSTLFATI 47
                4444443356789***********9866 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.3
      AAA_23 136 lflgqerfeefelkdkkerleelekeleeledekkllekleqek 179
                   l+qe+++ +++++    le++++ ++ + +++k+ + +++++
  EGE27768.1 239 ERLAQEQQAFEKQQAVRAHLEDYIRRFRAKATKAKQAQSRIKQL 282
                 22222222222222222244444444444444444444443333 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 0.00011
      AAA_23  24 ItGpNGaGKTTildAi 39 
                 I G NGaGK+T++ A+
  EGE27768.1 342 ILGANGAGKSTLIKAL 357
                 99************98 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.063
      AAA_23 128 kkiilnlilflgqer...............feefelkdkke............rleelekeleeledekkllekl............eqekekekelee 187
                 +k+i +++   + ++               +         +            ++++le+ l +l+d+   le++             ++++k +  ++
  EGE27768.1 532 DKSIHQQSTNTATGQeiclhdslskedrrkK---------NaqireqtaplrkQIAKLEDRLGKLSDTLAILENElsdarlyeddykSELLDKLNHQNT 621
                 2222222222222223344443322222220.........12344444555558899999999999988888888899898888888666777777777 PP

      AAA_23 188 leeeleeilkel 199
                 l++++ +i+++l
  EGE27768.1 622 LKSQIDDIEEQL 633
                 777777777765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0037       1.5       3      46 ..      32      73 ..      30      84 .. 0.82
   2 ?    7.7   0.0     0.011       4.6       4      23 ..     343     366 ..     340     481 .. 0.63
   3 ?   -1.6   0.1       8.2   3.4e+03      73      97 ..     619     641 ..     610     646 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0037
                EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHH CS
         AAA  3 lyGppGtGKTllakavakelgvefleisgsellskyvgesekki 46
                l+G+ GtGK++l   +  + ++++ +is++e +   + ++++++
  EGE27768.1 32 LTGNNGTGKSTLFATILGTHNTDVGSISLPESW--QIAHMAQEV 73
                89**************************99988..455555555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.011
                 ESSTTSSHHHHHHHHHHHH....T CS
         AAA   4 yGppGtGKTllakavakel....g 23 
                  G  G GK++l+ka++ el    g
  EGE27768.1 343 LGANGAGKSTLIKALVGELplidG 366
                 799***************744441 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 8.2
                 HHTTCCCHHHHHHHHHHHHHHHHTT CS
         AAA  73 srsgseseeeervvnqLlteldgvk 97 
                 ++  + +++ +++ +qLlt++ +++
  EGE27768.1 619 QN--TLKSQIDDIEEQLLTAMAELE 641
                 33..445555667777777776665 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.3       3.8   1.6e+03      18      57 ..     239     279 ..     232     284 .. 0.66
   2 !   19.7   6.3   1.8e-06   0.00077       7      68 ..     574     644 ..     569     645 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 3.8
  ABC_tran_CTD  18 eaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeL 57 
                   e+L +e+++ e++ a  +  +d+  ++ +  ++ +++++ +
    EGE27768.1 239 ERLAQEQQAFEKQQAVRAHLEDYiRRFRAKATKAKQAQSRI 279
                   66777777777777766666777666666666666666555 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.8e-06
  ABC_tran_CTD   7 qreleeleaeIeaLEeeiaeleaeladpelysdp..ek.......laelsaeleeleaeLeelyerWeeLe 68 
                   ++++++le+++ +L   +a le+el+d+ ly+d+   +        + l  +++++e++L +++++ e Le
    EGE27768.1 574 RKQIAKLEDRLGKLSDTLAILENELSDARLYEDDykSElldklnhQNTLKSQIDDIEEQLLTAMAELEVLE 644
                   78999**************************6664522655555555555569***********9999998 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0026       1.1       2      22 ..      27      47 ..      26      82 .. 0.88
   2 !    7.2   0.0    0.0092       3.8       3      27 ..     338     363 ..     337     383 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0026
      AAA_24  2 klkiliyGpsgiGKTtlakel 22
                ++ki ++G +g+GK+tl +++
  EGE27768.1 27 GQKIGLTGNNGTGKSTLFATI 47
                789**************9987 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0092
      AAA_24   3 lkiliyGpsgiGKTtlakel.gpkpl 27 
                 +++ i G +g+GK+tl+k l g+ pl
  EGE27768.1 338 ARLGILGANGAGKSTLIKALvGELPL 363
                 5789**************98655554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.034        14       1      16 [.      30      45 ..      30     116 .. 0.76
   2 !    9.2   0.0     0.004       1.7       3      23 ..     342     362 ..     340     412 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.034
      AAA_18  1 IlltGtpGvGKttlak 16
                I+ltG  G+GK+tl  
  EGE27768.1 30 IGLTGNNGTGKSTLFA 45
                89***********965 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.004
      AAA_18   3 ltGtpGvGKttlakeLskrlg 23 
                 + G+ G+GK+tl k+L  +l 
  EGE27768.1 342 ILGANGAGKSTLIKALVGELP 362
                 89**************77663 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0044       1.8      22      76 ..      31      84 ..      22     108 .. 0.68
   2 ?    5.7   0.4     0.025        11      22      39 ..     341     358 ..     331     492 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0044
      AAA_30 22 vltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLaeelgieastiakl 76
                 ltG  GtGK+t+ +++  +++++ g   i l  + + A+  +e + ++ s i+ +
  EGE27768.1 31 GLTGNNGTGKSTLFATILGTHNTDvG--SISLPESWQIAHMAQEVSATAMSAIDYV 84
                689**************999998855..4555556665555554444444445555 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.025
      AAA_30  22 vltGpAGtGKttalkalr 39 
                  + G+ G+GK+t++kal+
  EGE27768.1 341 GILGANGAGKSTLIKALV 358
                 578999*********986 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.2     0.002      0.84       1      22 [.      29      50 ..      29      63 .. 0.85
   2 ?    5.1   0.0     0.047        20       3      23 ..     341     361 ..     339     391 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.002
                EEEEE--TTSSHHHHHHHHHHH CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlel 22
                k+ +TG+ G+GK+Tl+  +l +
  EGE27768.1 29 KIGLTGNNGTGKSTLFATILGT 50
                588*************998765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.047
                 EEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlell 23 
                  i G  G GK+Tl+k ++ +l
  EGE27768.1 341 GILGANGAGKSTLIKALVGEL 361
                 67899**********999888 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0057       2.4      23      45 ..      30      52 ..      20     106 .. 0.83
   2 !    6.6   0.0    0.0089       3.7      23      53 ..     340     370 ..     329     390 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0057
                EEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC 23 valvGmgGvGKttlakqilnksd 45
                ++l G  G GK+tl++ il  ++
  EGE27768.1 30 IGLTGNNGTGKSTLFATILGTHN 52
                89***************997654 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0089
                 EEEEESTTSSHHHHHHHHCCSHCCCCCCBTE CS
      NB-ARC  23 valvGmgGvGKttlakqilnksdevegrFds 53 
                 +++ G  G GK+tl+k  + ++  ++g + +
  EGE27768.1 340 LGILGANGAGKSTLIKALVGELPLIDGIYKV 370
                 799**************99999999988865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.17        73       5      22 ..      33      50 ..      30     102 .. 0.86
   2 ?    2.3   0.1      0.42   1.8e+02      84     136 ..     234     285 ..     159     289 .. 0.71
   3 !   10.1   0.0    0.0017      0.69       5      25 ..     343     366 ..     341     411 .. 0.80
   4 ?   -2.2   0.2       9.9   4.1e+03      52      92 ..     528     567 ..     503     580 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.17
      AAA_33  5 vGlpGsGKstlaerllkk 22
                 G +G+GKstl   +l  
  EGE27768.1 33 TGNNGTGKSTLFATILGT 50
                6999*******9887655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.42
      AAA_33  84 erarflklarrlgvpvrivvvetdeetlkeRlakRaangddrsevpeealdrq 136
                  r r  +la+++ + ++  +v++  e + +R +++a +  ++++   ++ldr+
  EGE27768.1 234 IRTRAERLAQEQQAFEKQQAVRAHLEDYIRRFRAKATK-AKQAQSRIKQLDRM 285
                 45555556666665556666666666666666666663.44555555555555 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.0017
      AAA_33   5 vGlpGsGKstlaerllkklg...a 25 
                  G++G+GKstl++ l+ +l+   +
  EGE27768.1 343 LGANGAGKSTLIKALVGELPlidG 366
                 599*************99996542 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 9.9
      AAA_33  52 ldrlyqilnelarkalsagrnvildatnlsrrerarflkla 92 
                 ++++ + +++  + + + g+ + l   + ++++r++  ++ 
  EGE27768.1 528 NQKMDKSIHQQST-NTATGQEICLHDSLSKEDRRKKNAQIR 567
                 2333333322222.233455555555555555555554444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0037       1.6      28      72 ..      31      77 ..      11     174 .. 0.76
   2 ?   -0.0   0.1       2.4     1e+03      52     102 ..     230     282 ..     210     304 .. 0.53
   3 ?    7.1   0.1     0.016       6.7      29      63 ..     342     382 ..     335     502 .. 0.52
   4 ?   -1.5   0.1       6.7   2.8e+03     107     117 ..     569     581 ..     483     637 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0037
      AAA_16 28 llsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysa.l 72
                 l+G+ G+GKs+l  ++l   ++d g i l + ++  ++a + sa  
  EGE27768.1 31 GLTGNNGTGKSTLFATILGTHNTDvGSISLPESWQIAHMAQEVSAtA 77
                59**************9988888844555777777776665553333 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 2.4
      AAA_16  52 ggiflrgkcdql.esaipy..salaqalareellrqlldeaesaeleawrekle 102
                 +  f+r+++++l +++ ++  ++ ++a   e+++r   ++a++a++++ r k +
  EGE27768.1 230 YSQFIRTRAERLaQEQQAFekQQAVRAH-LEDYIRRFRAKATKAKQAQSRIKQL 282
                 4455555666553233333323344444.2244444444444444444444333 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.016
      AAA_16  29 lsGesGvGKsslvrellralekd..........ggiflrgkcdql 63 
                 + G+ G GKs+l+++l  +l                   g + q+
  EGE27768.1 342 ILGANGAGKSTLIKALVGELPLIdgiykvsetlQ----LGYFNQH 382
                 78***********988765554433333333332....3333333 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 6.7
      AAA_16 107 avpelagaea..s 117
                 ++++l+ ++a  +
  EGE27768.1 569 QTAPLRKQIAklE 581
                 2222222222222 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00035      0.15       6      41 ..      19      54 ..      16     150 .. 0.92
   2 ?    1.9   0.0      0.35   1.4e+02      16      35 ..     339     358 ..     332     368 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00035
                 HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  6 DalfpivqGqrtlipgafgvGktvisqslskqsnsd 41
                 D  f + +Gq++++ g++g+Gk+++ ++++  +n+d
   EGE27768.1 19 DINFQLHKGQKIGLTGNNGTGKSTLFATILGTHNTD 54
                 6678899**********************9998877 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.35
                  EEEEEESTTSSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  16 rtlipgafgvGktvisqsls 35 
                  r++i+ga+g Gk++++++l+
   EGE27768.1 339 RLGILGANGAGKSTLIKALV 358
                  889************99886 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1      0.02       8.3     131     160 ..      29      58 ..      17      74 .. 0.83
   2 !    8.0   0.0    0.0031       1.3      25     163 ..     232     370 ..     221     401 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.02
       T2SSE 131 lilvsGgTgsGKttllyallkeinksderi 160
                  i ++G  g+GK+tl  ++l + n++   i
  EGE27768.1  29 KIGLTGNNGTGKSTLFATILGTHNTDVGSI 58 
                 5679****************9999885555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0031
       T2SSE  25 vkvrervdgielreveelekaalerlisriaalakldiseerplqdarlpekgvrlrvvllPvvagealviR....kksakeltlddlgaeealkekia 119
                  ++r+r++++ ++++++ +++a+++ ++      +++  + +  q+ r++  + +    l Pv+a++ ++ R    ++ a+ l + d +  + +   + 
  EGE27768.1 232 QFIRTRAERLAQEQQAFEKQQAVRAHLEDYIRRFRAKATKAKQAQS-RIK--QLDRMTQLSPVMAENGFSFRfyepQHMASPLIYLDNATIGYDGIPML 327
                 5788888888877777777777777777777777777776666665.676..66667788999999999999875544455555555555555556677 PP

       T2SSE 120 evlrkavrerglilvsGgTgsGKttllyallkeinksderivtv 163
                   ++  ++    + + G+ g GK+tl+ al+ e++   + i  v
  EGE27768.1 328 TKINLRITPDARLGILGANGAGKSTLIKALVGELPLI-DGIYKV 370
                 7777778888888888*****************9877.555555 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.027        11      53      77 ..      27      51 ..      20      73 .. 0.84
   2 !    8.3   0.0    0.0027       1.1      58      76 ..     342     360 ..     333     371 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.027
      DUF815 53 annvLLwGarGtGKSslvkallney 77
                 +++ L+G+ GtGKS+l  ++l + 
  EGE27768.1 27 GQKIGLTGNNGTGKSTLFATILGTH 51
                567789**********998887665 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0027
      DUF815  58 LwGarGtGKSslvkallne 76 
                 + Ga G+GKS+l+kal+ e
  EGE27768.1 342 ILGANGAGKSTLIKALVGE 360
                 57**************976 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.081        34       1      45 [.      30      74 ..      30     181 .. 0.59
   2 ?   -1.6   0.1       5.9   2.5e+03      57      75 ..     243     261 ..     217     305 .. 0.53
   3 ?   10.1   0.0    0.0015      0.64       2      22 ..     341     361 ..     340     383 .. 0.87
   4 ?   -1.0   0.7       3.9   1.6e+03      86     109 ..     531     554 ..     509     626 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.081
                EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT-- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeee 45
                i + G+   GKS++   +lg +   +g++       + ++ +e +
  EGE27768.1 30 IGLTGNNGTGKSTLFATILGTHNTDVGSISLPESWQIAHMAQEVS 74
                67899***************9977777776666665555555555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.9
                 EET-EB--CHHHHHHHHHH CS
   Dynamin_N  57 ekekkledfsevreeieke 75 
                 ++++ +e+ ++vr ++e+ 
  EGE27768.1 243 QEQQAFEKQQAVRAHLEDY 261
                 3333333333333332222 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.0015
                 EEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlged 22 
                  ++G+  +GKS+++ aL+ge 
  EGE27768.1 341 GILGANGAGKSTLIKALVGEL 361
                 578999*************85 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 3.9
                 --SS-EEEEEEETTS-SEEEEE-- CS
   Dynamin_N  86 iskkvillkilsllvkgltlvDlP 109
                 ++k ++  +  + + +++ l D+ 
  EGE27768.1 531 MDKSIHQQSTNTATGQEICLHDSL 554
                 444444444444444444444432 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.6   1.9e+03       5      19 ..     343     357 ..     340     403 .. 0.77
   2 ?   13.6   0.1   7.8e-05     0.032      39     111 ..     459     527 ..     447     604 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.6
   Gtr1_RagA   5 mGksgsGKtsmrsii 19 
                 +G +g+GK+++ + +
  EGE27768.1 343 LGANGAGKSTLIKAL 357
                 799999999987754 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 7.8e-05
   Gtr1_RagA  39 ksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlkeilealrqyspe 111
                 + ++++ + l+l l D+ G   +v +    +++ i++ ++ l+ VfD + +e+  d++++ e l+++++ ++ 
  EGE27768.1 459 HLDLQMRNALMLALQDFAGALILVSH----DRDLIMSVCDELLLVFDGRATEFVGDMADYAEHLRQAKKAHQA 527
                 556789999**********9998877....7******************999999999999999988876543 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   0.00015     0.061      49     118 ..     213     280 ..     205     296 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00015
  NAD_binding_9  49 elllNvpasemslftddpptfaeWlrerga..leeaeeldpddfvpRalyGrYlrdlfeellarlpegvtve 118
                     ++l++  ++++l+t    ++ +++r+r++   +e +++ +++ + Ra++ +Y+r + ++++++ +++ +++
     EGE27768.1 213 GHILHIEQGQITLYTG---NYSQFIRTRAErlAQE-QQAFEKQQAVRAHLEDYIRRFRAKATKAKQAQSRIK 280
                    699***********97...7888888887764444.6777889999***************99888887776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0032       1.3      30      61 ..      24      54 ..      18      81 .. 0.81
   2 ?    3.0   0.0      0.15        65      36      58 ..     340     362 ..     326     371 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0032
       AAA_7 30 lknkkpvllvGptGtGKtviikdllkkldkek 61
                l++++++ l+G+ GtGK+++  ++l + + ++
  EGE27768.1 24 LHKGQKIGLTGNNGTGKSTLFATILGTHN-TD 54
                67889999*************99988777.44 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
       AAA_7  36 vllvGptGtGKtviikdllkkld 58 
                 + + G  G GK+++ik l+ +l+
  EGE27768.1 340 LGILGANGAGKSTLIKALVGELP 362
                 5578************9988776 PP

>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0         1   4.2e+02       6      35 ..      31      61 ..      26      67 .. 0.84
   2 ?   10.4   0.0   0.00093      0.39       7      37 ..     342     373 ..     338     375 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1
                   EEESTTTSSHHHHHHHHHHHSTTTEE.E--E CS
  Guanylate_kin  6 vlvgpsgaGksslkkaLlselpekfg.vsvs 35
                    l g +g+Gks+l  ++l +++   g +s +
     EGE27768.1 31 GLTGNNGTGKSTLFATILGTHNTDVGsISLP 61
                   58999*************9999888767766 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00093
                    EESTTTSSHHHHHHHHHHHSTTTEE.E--EEE CS
  Guanylate_kin   7 lvgpsgaGksslkkaLlselpekfg.vsvsht 37 
                    ++g++gaGks+l+kaL+ elp  +g + vs+t
     EGE27768.1 342 ILGANGAGKSTLIKALVGELPLIDGiYKVSET 373
                    79**********************99999987 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.017       6.9       9      40 ..      32      63 ..      27      85 .. 0.76
   2 ?    4.1   0.0     0.056        23       9      26 ..     342     359 ..     337     383 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.017
                EEEBTTSSCCCCCCTTSSSS------------ CS
      Septin  9 vvGesglGkttlintlfetdlieeekleease 40
                + G++g+Gk+tl+ t++ t+ ++  +++ +++
  EGE27768.1 32 LTGNNGTGKSTLFATILGTHNTDVGSISLPES 63
                689***************99999876666554 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.056
                 EEEBTTSSCCCCCCTTSS CS
      Septin   9 vvGesglGkttlintlfe 26 
                 + G++g Gk+tli++l+ 
  EGE27768.1 342 ILGANGAGKSTLIKALVG 359
                 78*************985 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.069        29       1      21 [.      29      49 ..      29      75 .. 0.88
   2 ?    5.7   0.1     0.039        16       2      20 ..     340     358 ..     339     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.069
                EEEEESSTTSSHHHHHHCHCT CS
         Roc  1 KvvlvGdsgvGKtsllkrfve 21
                K+ l G++g+GK++l+  ++ 
  EGE27768.1 29 KIGLTGNNGTGKSTLFATILG 49
                8899***********988764 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.039
                 EEEESSTTSSHHHHHHCHC CS
         Roc   2 vvlvGdsgvGKtsllkrfv 20 
                 + ++G +g+GK++l+k +v
  EGE27768.1 340 LGILGANGAGKSTLIKALV 358
                 569*************987 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.024        10       3      22 ..      30      51 ..      28      81 .. 0.82
   2 ?    4.9   0.1     0.042        17       4      21 ..     341     358 ..     338     365 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.024
                EEEEESTTCCHHHHHHHHH..C CS
        cobW  3 tvltGflGsGKTtLlnhll..e 22
                ++ltG  G+GK+tL  ++l  +
  EGE27768.1 30 IGLTGNNGTGKSTLFATILgtH 51
                679***************9642 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.042
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                 ++ G  G+GK+tL+++l+
  EGE27768.1 341 GILGANGAGKSTLIKALV 358
                 688999********9987 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.27   1.1e+02       5      28 ..      29      52 ..      25      74 .. 0.83
   2 ?    5.9   0.0      0.02       8.4       6      38 ..     340     372 ..     337     395 .. 0.74
   3 ?    0.3   0.0         1   4.3e+02      91     122 ..     490     525 ..     483     588 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.27
                EEEEEESTTSSHHHHHHHHHHHTT CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLlyktg 28
                +ig+ g   +GK+TL  ++l +++
  EGE27768.1 29 KIGLTGNNGTGKSTLFATILGTHN 52
                688899999*********996554 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.02
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHH CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekae 38 
                 +gi+g   +GK+TL+ +L+ ++  i+   ++ e
  EGE27768.1 340 LGILGANGAGKSTLIKALVGELPLIDGIYKVSE 372
                 799999************999888887666663 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1
                 HHT-SEEEEEEETT....TBSTHHHHHHHHHHHHTT CS
    GTP_EFTU  91 lrvlDgavlvvdav....eGvepqteevlrlalkeg 122
                 ++v+D  +lv+d +     G ++   e+lr+a+k +
  EGE27768.1 490 MSVCDELLLVFDGRatefVGDMADYAEHLRQAKKAH 525
                 688999999999885555678999999999998765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.072        30       3      19 ..      32      48 ..      30      74 .. 0.80
   2 ?    6.1   0.0     0.035        14       3      22 ..     342     361 ..     340     381 .. 0.88
   3 ?   -1.7   0.1       9.2   3.8e+03      27      67 ..     523     564 ..     510     572 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.072
  RNA_helicase  3 lyGpsgeGKStlakeLa 19
                  l+G++g+GKStl  ++ 
    EGE27768.1 32 LTGNNGTGKSTLFATIL 48
                  79*********998854 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.035
  RNA_helicase   3 lyGpsgeGKStlakeLakal 22 
                   + G++g GKStl+k L+ +l
    EGE27768.1 342 ILGANGAGKSTLIKALVGEL 361
                   68************987665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 9.2
  RNA_helicase  27 klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdee.np 67 
                   k +++++ + ++  ++  +  tgqe+++ d +++   ++ n 
    EGE27768.1 523 KAHQANQKMDKSIHQQSTNTATGQEICLHDSLSKEDRRKkNA 564
                   444444554566777778888899999999888877665444 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.037        16      16      44 ..      26      52 ..       9      96 .. 0.81
   2 ?    4.3   0.1      0.09        38      24      43 ..     342     361 ..     326     377 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.037
                HCHTEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE 16 kalgdvilLeGdLGaGKTtlvrglakalg 44
                k  g+ i L+G+ G+GK+tl   ++ + +
  EGE27768.1 26 K--GQKIGLTGNNGTGKSTLFATILGTHN 52
                3..77899************999886654 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.09
                 EEESTTSSHHHHHHHHHHHT CS
        TsaE  24 LeGdLGaGKTtlvrglakal 43 
                 + G  GaGK+tl+++l+ +l
  EGE27768.1 342 ILGANGAGKSTLIKALVGEL 361
                 56788**********99877 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0       0.2        84       5      32 ..      30      54 ..      26      86 .. 0.78
   2 ?    5.7   0.0     0.035        15       6      27 ..     341     362 ..     338     405 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.2
      AAA_14  5 lvitGaRrvGKTtllkqlikellvkkes 32
                + +tG   +GK+tl  +++ ++     +
  EGE27768.1 30 IGLTGNNGTGKSTLFATILGTHN---TD 54
                67999*********999987776...44 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.035
      AAA_14   6 vitGaRrvGKTtllkqlikell 27 
                  i Ga  +GK+tl+k l+ el 
  EGE27768.1 341 GILGANGAGKSTLIKALVGELP 362
                 699*************998876 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.4    0.0034       1.4       2      25 ..      29      52 ..      28      59 .. 0.84
   2 ?    1.7   0.0      0.38   1.6e+02       4      23 ..     341     360 ..     338     366 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0034
                EEEEEESTTSSHHHHHHHHHTTSE CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgakq 25
                ++ l Gn  +Gk+tlf ++ g+++
  EGE27768.1 29 KIGLTGNNGTGKSTLFATILGTHN 52
                6889***************99874 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.38
                 EEEESTTSSHHHHHHHHHTT CS
      FeoB_N   4 alvGnpnvGkttlfnaltga 23 
                  ++G   +Gk+tl+ al g 
  EGE27768.1 341 GILGANGAGKSTLIKALVGE 360
                 5789999**********985 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.11        47      30      47 ..      31      48 ..      17      60 .. 0.82
   2 ?    5.7   0.0     0.027        11      32      48 ..     343     359 ..     337     366 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.11
                HHHS--SHHHHHHHHHHH CS
        MukB 30 tlsGgnGaGksttmaafv 47
                 l G nG+Gkst  a+++
  EGE27768.1 31 GLTGNNGTGKSTLFATIL 48
                699*********999876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.027
                 HS--SHHHHHHHHHHHH CS
        MukB  32 sGgnGaGksttmaafvt 48 
                  G+nGaGkst + a+v 
  EGE27768.1 343 LGANGAGKSTLIKALVG 359
                 59*********999886 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.1      0.83   3.5e+02     115     144 ..     238     267 ..     222     293 .. 0.46
   2 ?   14.6  14.9   7.2e-05      0.03      27     161 ..     511     648 ..     503     649 .] 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.83
       ATG16 115 eeklkedeerlaeleaeraaletklkdree 144
                  e+l +++++ ++ +a ra+le+ +++ ++
  EGE27768.1 238 AERLAQEQQAFEKQQAVRAHLEDYIRRFRA 267
                 333334444444444444444433332211 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 7.2e-05
       ATG16  27 Lldrtsaleaenaklekaaasaks.sksskksakekeasasq.......snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleek 117
                 ++d +++l++ +++++++ +  ks +++s+++a+ +     +       s++++++k ++  +++a lr++ a+l  + g+l++ l  l++el++ +  
  EGE27768.1 511 MADYAEHLRQAKKAHQANQKMDKSiHQQSTNTATGQ-----EiclhdslSKEDRRKKNAQIREQTAPLRKQIAKLEDRLGKLSDTLAILENELSDARLY 604
                 667777777777777555444444333333333333.....2445558899999999999999********************************9999 PP

       ATG16 118 lkedeerlaeleaeraaletklkdreeelrekeklvqdlqDEls 161
                     +++l +  ++ ++l+ +++d ee+l    + ++ l DEls
  EGE27768.1 605 EDDYKSELLDKLNHQNTLKSQIDDIEEQLLTAMAELEVLEDELS 648
                 999999999999999***************************96 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.38   1.6e+02      25      44 ..      29      48 ..      13      56 .. 0.85
   2 ?    0.1   0.0       1.7   7.2e+02     139     193 ..     230     282 ..     190     291 .. 0.73
   3 ?   10.8   0.0   0.00092      0.38      25      47 ..     339     361 ..     319     366 .. 0.85
   4 ?   -0.1   2.1         2   8.4e+02     146     197 ..     573     616 ..     505     643 .. 0.41

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.38
       DUF87 25 HlAilgsTGsGKSntvavLl 44
                 ++  g  G+GKS++ a +l
  EGE27768.1 29 KIGLTGNNGTGKSTLFATIL 48
                57788999********9998 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.7
       DUF87 139 sdepveklleelkkekeelrklknqaiarlldkledllrkggsfsnsstdliall 193
                 + +++ + +e l  +++++ ++++  +a l+d ++++  k  +  ++ ++ i++l
  EGE27768.1 230 YSQFIRTRAERLA-QEQQAFEKQQAVRAHLEDYIRRFRAKATKA-KQAQSRIKQL 282
                 4556666667776.666777888888888888888888877777.5555555555 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00092
       DUF87  25 HlAilgsTGsGKSntvavLleel 47 
                 +l+ilg  G+GKS++++ L+ el
  EGE27768.1 339 RLGILGANGAGKSTLIKALVGEL 361
                 79*****************9886 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 2
       DUF87 146 lleelkkekeelrklknqaiarlldkledllrkggsfsnsstdlialllekl 197
                 l++++         + ++   +l+d+l  l ++ ++    ++d+ ++ll+kl
  EGE27768.1 573 LRKQIA--------KLEDRLGKLSDTLAILENELSDARLYEDDYKSELLDKL 616
                 111111........22222222223333333333332333333333333333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.043        18       5      21 ..      32      48 ..      28      55 .. 0.87
   2 ?    6.4   0.2     0.019       7.9       5      23 ..     342     360 ..     339     366 .. 0.88
   3 ?    1.0   0.0      0.85   3.6e+02      73      95 ..     486     509 ..     469     562 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.043
                EEC-TTTCHHHHHHHHH CS
       NACHT  5 lqGeaGsGKTtLlqkla 21
                l+G +G GK+tL + + 
  EGE27768.1 32 LTGNNGTGKSTLFATIL 48
                89**********99986 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.019
                 EEC-TTTCHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklala 23 
                 + G++G GK+tL++ l+ +
  EGE27768.1 342 ILGANGAGKSTLIKALVGE 360
                 89************99865 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.85
                 HHHHCCSCCCEEEEEE-.STT-SS CS
       NACHT  73 wavllelperlLlilDg.lDelvt 95 
                 + +++++ + lLl++Dg + e+v 
  EGE27768.1 486 RDLIMSVCDELLLVFDGrATEFVG 509
                 568999999***999993344544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.049        20       1      19 [.      29      47 ..      29      68 .. 0.79
   2 ?   10.6   0.0    0.0012       0.5       4      28 ..     342     371 ..     339     410 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.049
      AAA_28  1 kivitGgestGKTtlleaL 19
                ki +tG  +tGK+tl + +
  EGE27768.1 29 KIGLTGNNGTGKSTLFATI 47
                5779***********8654 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0012
      AAA_28   4 itGgestGKTtlleaLaar.....gypvvp 28 
                 i+G+ ++GK+tl++aL  +     g+  v 
  EGE27768.1 342 ILGANGAGKSTLIKALVGElplidGIYKVS 371
                 89*************974445555555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0068       2.8      10      41 ..      32      54 ..      25     111 .. 0.80
   2 ?   10.7   0.1    0.0011      0.47      10     113 ..     342     469 ..     338     496 .. 0.67
   3 ?   -1.9   1.7       9.1   3.8e+03      59     103 ..     589     633 ..     513     646 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0068
      AAA_22 10 vtGesGtGKTtllrrlleqldeeakaeeerpe 41
                +tG  GtGK+tl +++l ++         + +
  EGE27768.1 32 LTGNNGTGKSTLFATILGTH---------NTD 54
                89************999988.........444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0011
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee.......................erpevvfvtlpsst..sskdllrellralglelkaerlsseelleale 83 
                 + G  G+GK+tl++ l+ +l+    ++                            +  + l  ++  +s+  lr++l  +g ++++  +++++l++  e
  EGE27768.1 342 ILGANGAGKSTLIKALVGELP---LIDGiykvsetlqlgyfnqhqmdslddD--ATPMIMLRRLSgqTSDANLRAFLGGFGFQGER-IDTQSRLFSGGE 434
                 6799***************96...4444666877888888777777776432..22233333333235555577777777777777.777777777777 PP

      AAA_22  84 qalrarav.....ielliiDEaqh.lrseealeeLr 113
                 +a    a      + +li+DE  + l   ++ + L 
  EGE27768.1 435 RARLMLALlvwqrPNVLILDEPTNhL-DLQMRNALM 469
                 77777777778888999999987778.566666663 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 9.1
      AAA_22  59 ellralglelkaerlsseellealeqalraravielliiDEaqh.l 103
                 + l +l++el+++rl ++++ + l + l+++ +     iD+++  l
  EGE27768.1 589 DTLAILENELSDARLYEDDYKSELLDKLNHQNT-LKSQIDDIEEqL 633
                 444555555555666666666777777777766.556666666554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0062       2.6       4      47 ..      32      75 ..      29      93 .. 0.86
   2 ?    0.4   0.2       1.5   6.1e+02       4      19 ..     342     357 ..     340     363 .. 0.88
   3 ?    0.9   0.5      0.98   4.1e+02      20     108 ..     515     617 ..     511     648 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0062
                EE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B-- CS
       AAA_5  4 LvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrrei 47
                L G+ GtgKs+l   ++   n+ v  + l+++++ +++ ++++ 
  EGE27768.1 32 LTGNNGTGKSTLFATILGTHNTDVGSISLPESWQIAHMAQEVSA 75
                89****************99999999999999999999998875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.5
                 EE--SSSSHHHHHHHG CS
       AAA_5   4 LvGppGtgKselaerl 19 
                 ++G+ G gKs+l++ l
  EGE27768.1 342 ILGANGAGKSTLIKAL 357
                 68**********9876 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.98
                 GGGBS--EEEEE--TT--HHHHH--B--.........--------..............G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE CS
       AAA_5  20 aaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..............egeilvlDEveraesevlnsLlslleerrllleeggelvk 104
                 a+ l++     q ++++ ++  +++++++ g++     +l ++ r              +++i+ l++     s++l++L + l++ rl+ ++ + +  
  EGE27768.1 515 AEHLRQAKKAHQANQKMDKSIHQQSTNTATGQEICLHDSLSKEDRrkknaqireqtaplRKQIAKLEDRLGKLSDTLAILENELSDARLYEDDYKSELL 613
                 66666666677777777777777777777444444444444444446666677777888999999998887779999*****99999999999888776 PP

                 ---. CS
       AAA_5 105 aknd 108
                  k +
  EGE27768.1 614 DKLN 617
                 6655 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.9    0.0064       2.7       4      58 ..     575     633 ..     572     639 .. 0.87
   2 ?    4.9   0.2     0.079        33       4      27 ..     624     647 ..     621     649 .] 0.89

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0064
    CCDC-167   4 seIdkleeklascrerLeaverrlrkeelseee.Resle...eEeaslkeqleenekeL 58 
                 ++I kle++l ++ + L  +e++l +++l e++ + +l    + +++lk+q+++ e++L
  EGE27768.1 575 KQIAKLEDRLGKLSDTLAILENELSDARLYEDDyKSELLdklNHQNTLKSQIDDIEEQL 633
                 89**************************999885555555667899***********99 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.079
    CCDC-167   4 seIdkleeklascrerLeaverrl 27 
                 s+Id++ee+l+    +Le +e +l
  EGE27768.1 624 SQIDDIEEQLLTAMAELEVLEDEL 647
                 8*****************999877 PP

>> NBD_C  Nucleotide-binding C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.3      0.35   1.5e+02      50     108 ..     212     267 ..     195     280 .. 0.74
   2 ?    7.6   1.1     0.012       4.9      37     107 ..     522     592 ..     506     603 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.35
                 HHHHHCCTCCTSSEEEEEECTGHHHH.HH---HHCCC-HHHHHHHHHHHHHHHHHHHHH CS
       NBD_C  50 leqaeeallaagkdvlvytsrepedvrdaleslqaelglerageriaaalaeiarrlve 108
                 +  ++     ++ ++ +yt   ++ +r+++e+l++e+++ ++ +++ a l + +rr  +
  EGE27768.1 212 CGHILHI---EQGQITLYTGNYSQFIRTRAERLAQEQQAFEKQQAVRAHLEDYIRRFRA 267
                 4444333...4558899999999999988899999999888888888888888887753 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.012
                 SCCTCHHHHHHHHHHHHHCCTCCTSSEEEEEECTGHHHH..HH---HHCCC-HHHHHHHHHHHHHHHHHHHH CS
       NBD_C  37 edeesaeaeieraleqaeeallaagkdvlvytsrepedvr.daleslqaelglerageriaaalaeiarrlv 107
                 +++++a++ +++ ++q +++ ++ g+ + ++ s ++ed+r ++++  +++  l ++ +++++ l+++   l+
  EGE27768.1 522 KKAHQANQKMDKSIHQQSTNTAT-GQEICLHDSLSKEDRRkKNAQIREQTAPLRKQIAKLEDRLGKLSDTLA 592
                 44566777788888887777655.***************96666666666667777999*****99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1862  (0.103854); expected 358.6 (0.02)
Passed bias filter:                      877  (0.0489152); expected 358.6 (0.02)
Passed Vit filter:                       154  (0.00858944); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              43  [number of targets reported over threshold]
# CPU time: 0.91u 0.26s 00:00:01.17 Elapsed: 00:00:00.42
# Mc/sec: 4690.73
//
Query:       EGE27769.1  [L=279]
Description: DnaJ-like chaperone protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-16   60.8   3.2    2.2e-16   59.7   3.2    1.6  1  DnaJ      DnaJ domain
    0.00011   22.3   0.0     0.0004   20.5   0.0    1.8  1  DnaJ_C    DnaJ C terminal domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   3.2   2.4e-20   2.2e-16       1      63 []       8      68 ..       8      68 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 2.4e-20
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                dyY +Lgv+ da++++Ik+aYr+ + ++HPD++   ++ e+  +++n+Ay +L+d++ R+qYD
  EGE27769.1  8 DYYRLLGVADDADTATIKRAYRQHIARHHPDRQ--ANSDEDVVHQLNTAYAILKDDKVRRQYD 68
                8*******************************9..56789999*******************9 PP

>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.4e-08    0.0004       7     145 ..     156     278 ..     120     279 .] 0.79

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.4e-08
                 E-HHHHHH-.EEE.EEEE.......TEEEEEE-TT--TT-EEEETT-SSSS..S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C   7 isleelykGktkkikikrnvikkekktlevkipaGikdgqkirlegeGdeeggepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptl 105
                 i l+ +y+G +  i         + k+++v  paG  +g+ i+++ +G++       + ++i+ kp +++ + g d+ + + +s  +a+ G+++ +p +
  EGE27769.1 156 IGLHTVYEGGEILIHW-------QGKRFKVVLPAGLSHGDIITVQCHGSP-------VRLRIQTKPVNIYVK-GLDINYVIFLSPNQAANGDTVVLPKP 239
                 4555555555555444.......35679********************65.......578888878876655.*****999*************98666 PP

                 S-EEEEEE...--TT-EEEETT-S-EET...TEE--EEEEEEE CS
                 xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 106 dgkvklki...tqpgevlrikgkGmpklkkpgkrGdlyvevkv 145
                  g  +l+i    +  ++++++++G+ ++    + Gd++v++++
  EGE27769.1 240 IGL-TLTIppnGKYPTKIMLSNQGLRQM---ASVGDVIVHLNI 278
                 222.334544545557888******998...69*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2394.63
//
Query:       EGE27770.1  [L=326]
Description: hypothetical protein EA1_00225 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-07   30.1   0.2    1.2e-06   29.3   0.2    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
    7.5e-07   29.1   1.3    1.6e-05   24.7   1.3    2.2  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.3e-06   27.9   0.1    2.2e-06   27.1   0.1    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
      0.002   18.6   0.1     0.0034   17.8   0.1    1.5  1  AAA_16         AAA ATPase domain
  ------ inclusion threshold ------
       0.01   15.2   0.5       0.03   13.7   0.2    1.7  2  DUF915         Alpha/beta hydrolase of unknown function (DUF9
       0.17   11.7   0.3         16    5.3   0.0    2.8  3  Ser_hydrolase  Serine hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.2     4e-10   1.2e-06       1     211 [.      72     301 ..      72     308 .. 0.55

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4e-10
                    EEEE--.GC.....GCHHHHHHHHCCT.CEEEEE--TTST...S-GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..... CS
  Abhydrolase_6   1 vlllHG.agssassWlvapLaallaag.vhvlapDlpGhG...rsdpppldledladlaalldelaagggpvvlvGHSlGGalalaaapla..... 86 
                    v+l HG  gss+s++ ++ La   +   +h ++  ++++G    s    ++  d+a+la++l+ l ++   ++++G SlGG   +    +      
     EGE27770.1  72 VVLFHGmEGSSQSHY-ARTLASHISTKgWHFVVAHFRSCGgvaVSGKVFYNAGDAAELAHYLQVLQQQFTTIYAIGVSLGGNALAK---YMgeygs 163
                    89***9777778888.45663333444677799******756655666688888888888888887778999********996666...4444456 PP

                    .....EEEEES-..----TTTS----TTHHHHHH..TT-C.....CCCH....CCH.....S-HSCCCCHHHC..CCCHCHCCCGHHHHCC..... CS
  Abhydrolase_6  87 ...lvvgvlldppptalpagllaaalelllalla..llrl.....lawl....sre.....plprlfladeda..daawrarlarlaalla..... 156
                        +++v++++    ++++ ++ a+e ll+++   ++ l      a++    s+e     +          a   a++  +++++++ +      
     EGE27770.1 164 daiANRAVVVSA---PVDLASASIAMERLLGRYIytPYLLnpiikKALDnrlsSEEiaalkS----------AkrMADFDNAFTAPRHGFRskndy 246
                    545445588888...33444433333333333332222222123323331111222222221..........133333333333333333322111 PP

                    HHCHTTCCHHTT-TTGCEEE.CTT-CHHHHCHHCCCH..STTEEETCE...SSS-HHH CS
  Abhydrolase_6 157 glgllpaaawadlpvpllvl.ggeDplvprllerlla..qagarlpvvlpgaGHlphl 211
                    ++ + +++ ++++  p+l++ +++Dp +   + +  +  + ++ l    +++GH  + 
     EGE27770.1 247 YRQASALPYLRHIQRPTLIItAKDDPFLG--VTAEPTdvSSDVLL-LDTRYGGHIGFV 301
                    33344466999999999999678888666..44444443333444.567789996665 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   1.3   5.4e-09   1.6e-05       1     110 [.      70     179 ..      70     302 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.4e-09
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH.HHHCTTSSEEEEEETHHHHHHHHHHHHH. CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldri.ldalgddkltlvGhSmGGmialayaaey. 94 
                    p +v++hG+ gss + ++r la++++ +g+++++   r +g    +     + y+  + a+  +++ + +     ++ +G S+GG   + y  ey 
     EGE27770.1  70 PIVVLFHGMEGSSQSHYARTLASHISTKGWHFVVAHFRSCGGVAVSGK---VFYNAGDAAELAHYLqVLQQQFTTIYAIGVSLGGNALAKYMGEYg 162
                    78****************************************999998...88999999999999999999************************9 PP

                    GGGEEEEEEESE.CSSC CS
  Abhydrolase_1  95 perVkalvllga.idpa 110
                     + +++ + + + + + 
     EGE27770.1 163 SDAIANRAVVVSaPVDL 179
                    66665443333322223 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   7.5e-10   2.2e-06       5     203 ..      70     272 ..      67     280 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.5e-10
  Hydrolase_4   5 avvvlvHGlaehsg.ryae.laeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvk.eehpelplfllGhSmGGliallyllrypd 99 
                   +vvl+HG+  +s+  ya+ la +   +G++++    r    s+g  +   ++     D+a++ + ++  +++ + ++ +G S+GG   ++y+ +y +
   EGE27770.1  70 PIVVLFHGMEGSSQsHYARtLASHISTKGWHFVVAHFR----SCGGVAVSGKVFYNAGDAAELAHYLQvLQQQFTTIYAIGVSLGGNALAKYMGEYGS 163
                  58*******88876268888**************9876....7777788889999999*****999997888888******************99988 PP

  Hydrolase_4 100 .kva..glilsaPalkikaklkappllklllkllgkllpklqv.....snnlkadslsrdpevvaayeadplv.hgkitvrlllelldamkrleeraa 188
                    +a  ++++saP+ +++      ++  ++ +llg+ + + ++     ++ l+++      e++aa+++ + +  ++      ++ ++  ++  ++a+
   EGE27770.1 164 dAIAnrAVVVSAPV-DLA------SASIAMERLLGRYIYTPYLlnpiiKKALDNRLS---SEEIAALKSAKRMaDFDNAFTAPRHGFRSKNDYYRQAS 251
                  54445355555555.555......334456777888877777733333333333333...45555555555555555555556666666555555555 PP

  Hydrolase_4 189 kit......lPllllhGeaDk 203
                  ++        P+l++ +++D+
   EGE27770.1 252 ALPylrhiqRPTLIITAKDDP 272
                  554444444899999999997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.1e-06    0.0034      26      67 ..      72     126 ..      63     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.1e-06
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdql.esa.............i 67 
                 +vl++G+ G+  s  +r+l+ +++++g++f+ ++++++ +               +
  EGE27770.1  72 VVLFHGMEGSSQSHYARTLASHISTKGWHFVVAHFRSCgG-VavsgkvfynagdaA 126
                 79************************************41.122333232222321 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.32   9.5e+02      11      27 ..      68      85 ..      59     122 .. 0.70
   2 ?   13.7   0.2     1e-05      0.03      89     128 ..     128     165 ..     120     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.32
      DUF915 11 eiPt.ifihGyggtaesl 27
                ++P+ +++hG +g+ +s 
  EGE27770.1 68 TTPIvVLFHGMEGSSQSH 85
                456526889*99998774 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1e-05
      DUF915  89 lkkvlseLkkkYnikkfnavGhSmGglaltsYleeyaddk 128
                 l + l+ L++  +++ ++a+G S Gg al++Y+ ey++d 
  EGE27770.1 128 LAHYLQVLQQ--QFTTIYAIGVSLGGNALAKYMGEYGSDA 165
                 5556666776..5789*********************985 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.031        94       2      25 ..      73      96 ..      72     109 .. 0.87
   2 ?   -0.4   0.0       0.3     9e+02      50      92 ..     135     179 ..     121     194 .. 0.63
   3 ?    5.3   0.0    0.0055        16     109     154 ..     255     299 ..     217     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.031
                   EEE--TT--TTTTCHHHHHHHHCC CS
  Ser_hydrolase  2 livpGlqgsgpeHWqsrwekklpa 25
                   ++ +G++gs+++H  + ++++ ++
     EGE27770.1 73 VLFHGMEGSSQSHYARTLASHIST 96
                   789***********9999988765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.3
                    HHC-STTEEEEEETCHHHHHHHHHHHTTSSSEE.EEEEE.T--SG CS
  Ser_hydrolase  50 veaaeekvvlvAHSlgclavlhaaelqlakkva.galLV.apadv 92 
                    ++++ + ++ +  Slg  a ++++     +++a +a+ V ap d 
     EGE27770.1 135 LQQQFTTIYAIGVSLGGNALAKYMGEYGSDAIAnRAVVVsAPVDL 179
                    333334478889999999999999866666665244444255555 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0055
                    -SSHHCCHCEEEEETTBTTC-HHHHHHHHHHCT-EEEEETT-TTSS CS
  Ser_hydrolase 109 preklpfpslvvaSenDpyvsfeeaeelaeawgaelvdlgeaGHin 154
                      ++ + p+l++ +++Dp++ ++ ae +  + ++ l d    GHi 
     EGE27770.1 255 YLRHIQRPTLIITAKDDPFLGVT-AEPTDVSSDVLLLDTRYGGHIG 299
                    346778899**********9985.6666667777888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 2716.79
//
Query:       EGE27771.1  [L=265]
Description: dihydrodipicolinate reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-42  142.4   0.6    9.5e-42  141.8   0.6    1.2  1  DapB_C          Dihydrodipicolinate reductase, C-terminus
    4.7e-31  107.5   0.1      1e-30  106.4   0.1    1.6  1  DapB_N          Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.018   15.5   0.1       0.04   14.4   0.1    1.7  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> DapB_C  Dihydrodipicolinate reductase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   0.6   1.6e-45   9.5e-42       1     121 []     127     262 ..     127     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 1.6e-45
                 HHHHHHHHHHHHCCCSTTT-EEEEEEEESTT--SSS-HHHHHHHHHHH.....................-S-ETTCCCEEEETTT--CCCCEEEECTTE CS
      DapB_C   1 GvnlllklveeaakllkeaydveiiEkHhnkKaDaPSGTAlalaeaia......egke...........arkkkeigihsvRgggvvgehevlfagege 82 
                 Gvnl l+l+++ a++l  + dveiiE Hh++K+DaPSGTAl++a+ai          +           +r++++igih++Rgg++vgeh+v f  +ge
  EGE27771.1 127 GVNLSLNLLATTARVLGLDADVEIIEHHHKHKIDAPSGTALMMAQAITeargqnI--TnaaiygrkgaaKRQRGDIGIHALRGGEIVGEHTVEFMMDGE 223
                 9****************99*****************************7766550..1555666667669999************************** PP

                 EEEEEEEEESCHHHHHHHHHHHHHH.HCTSSEESHHHHH CS
      DapB_C  83 vieikhealsreiFaeGallaaewlakkkkglysmedvL 121
                 +i+i+h+a++r++Fa+Gal+aa w a++++gly+m+dvL
  EGE27771.1 224 IIQITHKAQNRATFATGALRAALWAAQQPAGLYDMQDVL 262
                 *************************999**********8 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.1   1.8e-34     1e-30       2     124 .]       5     124 ..       4     124 .. 0.95

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 1.8e-34
                 EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEEE-S-HHHHHHHHHHHHHTT-EEEE--SS CS
      DapB_N   2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliDFTtpeavlenlklalekgvklViGTTG 100
                 k++++GasGrmG+ +++   +++++el++a+ r++s+l+g dage++g +k+gva++ +l+    ++dv+iDF+ pea+ e l+ ++ ++++lV+G TG
  EGE27771.1   5 KIGIMGASGRMGRMLIESTMNHPNTELGGAYVRSTSSLIGVDAGEFIGGKKSGVALS-TLDG--SQVDVMIDFSLPEAFDEALNQCVTHKIPLVMGVTG 100
                 9*****************************************************998.3333..238******************************** PP

                 --HHHHHHHHHHTTTSEEEE-S-- CS
      DapB_N 101 lseeelaeleelakkigvviapNf 124
                 ls+++ a+l+++ak+i++v+a N+
  EGE27771.1 101 LSDDQEAKLQDAAKHIAIVYAGNY 124
                 **********************97 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   6.6e-06      0.04       1      35 [.       5      39 ..       5      83 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.6e-06
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssr 35
                    k++i Ga+G +G+ l++   +hp+ el  ++ +s 
      EGE27771.1  5 KIGIMGASGRMGRMLIESTMNHPNTELGGAYVRST 39
                    79************************998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2307.87
//
Query:       EGE27772.1  [L=397]
Description: putative PLP-dependent cystathionine beta-lyase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-70  237.0   0.0    2.8e-70  236.8   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00046   19.3   0.0     0.0016   17.4   0.0    1.7  2  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.037   13.3   0.0      0.058   12.7   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
       0.13   11.5   0.0        5.3    6.3   0.0    2.6  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.8   0.0   6.3e-74   2.8e-70       2     381 ..       5     387 ..       4     388 .. 0.93

  Alignments for each domain:
  == domain 1  score: 236.8 bits;  conditional E-value: 6.3e-74
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHHCTTCSSS...-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTE CS
  Cys_Met_Meta_PP   2 Tllvhagqekdeqtgavavpiyltstykfkdvdeafageekg...yeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGd 92 
                      T+l+   ++   q ++ ++p+y++st  f+++++ f+++ ++   y Y+  g+pt+  l ++ia Legg+ al+++sG+aAi ++ +all +Gd
       EGE27772.1   5 TQLICDPRQVPMQINSLQPPVYHASTIIFDNTKALFQRHWRDrydYSYGTHGTPTTYLLADQIARLEGGKYALLTPSGLAAIVLVNTALLGQGD 98 
                      66777777878899****************999995544333314778899******************************************* PP

                      EEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGG CS
  Cys_Met_Meta_PP  93 eivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplk 186
                      e+ v++++Y++  + l ++ k+ g+ +k++++ d+ +++       kl++lE+ ++ +l+ +D++ ++++akk++v v +D t+ ++l   p++
       EGE27772.1  99 EVWVTENMYSPNLEHLYELQKRYGVVIKIYNPLDATSFQPT--AACKLLWLEAAGSVTLEFPDLQGLINIAKKHHVCVALDSTWGAGLAYSPFD 190
                      ********************************999988765..5799*********************************************** PP

                      GT...-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE CS
  Cys_Met_Meta_PP 187 lg...aDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvy 277
                      l+   +Di vh+ TKy +G +dv++G iv+++ e l+++l++++  lG  +s +d+  + r l  L+lR +++++nA+++  +L+++p+  +v 
       EGE27772.1 191 LNgvsVDICVHALTKYPSGGGDVLMGSIVTND-ETLHTKLRRMHTLLGFSVSGDDCARVYRSLPSLALRYDKQSKNAIELLTYLKHEPAFAQVL 283
                      *9999***************************.************************************************************* PP

                      -TTSTTSTTHHHHHHHSSSG-S..EEEEEESSHH..HHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--S CS
  Cys_Met_Meta_PP 278 Ypglpshpqhelakkqlkgagg..vlsFelksee..ekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGi 367
                      +p+ p+  +h+++++++ ++ +  ++s   +++       +f+d+l++f+l  s+G++ sl+ l    + + +p+ +   +     ++R+++G+
       EGE27772.1 284 HPANPDTLGHQFWQQNCPNGRSagLVSVVFDKRYswTDICRFCDTLQIFKLGFSWGSATSLVMLYDLSKMRTLPQAHLCGRY----VVRFCIGL 373
                      ***************98765444699999999986677889**********************9999999999988877775....5******* PP

                      S-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 368 EdvdDliaDlkqal 381
                      E  +Dli+D+k al
       EGE27772.1 374 ESPKDLIDDIKTAL 387
                      ************98 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.6e-07    0.0016      73     197 ..      85     201 ..      66     213 .. 0.83
   2 ?   -1.1   0.0      0.16   7.1e+02     304     342 ..     301     343 ..     271     382 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.6e-07
                  HHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT- CS
  Aminotran_5  73 ainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkga 170
                  ai lv  +l   l +gde+ vte+ +  nl    el+kr g+ +k+++  +  + ++ +        +kl+ + ++ +vt  + +++ ++++akk+++
   EGE27772.1  85 AIVLVNTAL---LGQGDEVWVTENMYSPNLEHLYELQKRYGVVIKIYNPLDATSFQPTA-------ACKLLWLEAAGSVTLEFPDLQGLINIAKKHHV 172
                  444444444...***********************************996666666554.......59999*************************** PP

                  EEEEE-TTTTT..TS---HHHHTESEEEE CS
  Aminotran_5 171 lvlvDaaqavg..hipidvkklgvDflaf 197
                  +v++D++ ++g    p+d++ + vD+ + 
   EGE27772.1 173 CVALDSTWGAGlaYSPFDLNGVSVDICVH 201
                  *****986554116799999999998876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.16
                  B-CTCBSEEEEEE.TTCSHHHHHHHHHHTTEEEEE...E-TTT CS
  Aminotran_5 304 kaerrasivsfnf.kgvhaedvatlLdeegIavrs...Ghhca 342
                  ++ r+a++vs++f k++++ d+ +++d+ +I   +   G++++
   EGE27772.1 301 PNGRSAGLVSVVFdKRYSWTDICRFCDTLQIFKLGfswGSATS 343
                  56789999*****889999****99999877544444466666 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.3e-05     0.058      27      81 ..      51     113 ..      47     195 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.3e-05
                      CCT..--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT......-H CS
  Beta_elim_lyase  27 sYg..edktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtep......ah 81 
                      sYg  + +t++ L+d++a+l g ++al +p+G aA  +  ++ll +g+ev vte+       h
       EGE27772.1  51 SYGthGTPTTYLLADQIARLEGGKYALLTPSGLAAIVLVNTALLGQGDEVWVTENmyspnlEH 113
                      566224689*******************************************99855443333 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0012       5.3      24      73 ..      59     107 ..      45     119 .. 0.85
   2 ?    2.1   0.1     0.021        96     181     198 ..     216     233 ..     148     251 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0012
                      HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS- CS
  DegT_DnrJ_EryC1  24 eveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltF 73 
                      ++  ++ ++a+  g k+a+ + sG aA+ l+ +al +g+gdeV v+ + +
       EGE27772.1  59 TTYLLADQIARLEGGKYALLTPSGLAAIVLVNTAL-LGQGDEVWVTENMY 107
                      5556788999999***************9998886.6789***9998876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.021
                      EEEEESTHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 181 Gavvtndeelaekarvlr 198
                      G +vtnde l++k+r+++
       EGE27772.1 216 GSIVTNDETLHTKLRRMH 233
                      778888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 3376.84
//
Query:       EGE27773.1  [L=315]
Description: putative sodium bile acid symporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-48  164.4  18.5    4.5e-48  163.5  18.5    1.4  1  SBF           Sodium Bile acid symporter family
    8.8e-26   90.9  28.0      1e-25   90.7  28.0    1.0  1  SBF_like      SBF-like CPA transporter family (DUF4137)
    0.00018   20.0   7.7    0.00018   20.0   7.7    3.0  3  Mem_trans     Membrane transport protein
  ------ inclusion threshold ------
       0.29   10.5  17.0       0.12   11.8   5.1    2.5  2  TssN          Type VI secretion system, TssN
          2    8.1   7.2        0.1   12.3   1.4    1.8  2  DUF1673       Protein of unknown function (DUF1673)


Domain annotation for each model (and alignments):
>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5  18.5   1.2e-51   4.5e-48       3     194 ..      43     220 ..      41     221 .. 0.96

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 1.2e-51
         SBF   3 lLilmmfpmglkveveklkellkrpkalllglvlqwvikPllmfilakillrdlklepelavGlilvglapggamsnvwtylakGdlelsvvlvalstl 101
                 lL+++m++mgl++++++++e++k+pka+++g++lq+v++P+++f+l +     ++l+p la+G+ilvg++pgg++snv+t+lakG+++lsv  ++lstl
  EGE27773.1  43 LLGIVMLGMGLTLTFKDFGEVTKNPKAVIIGVILQYVVMPVIAFLLVQ----AFRLPPDLAIGVILVGCCPGGTSSNVITFLAKGNTALSVACTTLSTL 137
                 899*********************************************....99********************************************* PP

         SBF 102 lailltPlllyllaksleqttlkvpieeivksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvifalkgelive 194
                 la++ltP + yl+a+++    l+v++ +++ svl +v++P+ +G+++r+++ +        +k+ + +++is+i+++l++ +++a + + i+e
  EGE27773.1 138 LAPILTPAVFYLFASQW----LQVDAGGMFVSVLKMVLLPVFIGLIIRSLFKQ------KVQKVSQTMPLISVIAIILIVSAVVAVSKDRIIE 220
                 *****************....********************************......6889999999999999999999999998888775 PP

>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7  28.0   2.9e-29     1e-25       2     312 ..      14     306 ..      13     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 2.9e-29
    SBF_like   2 wfllllilvillAslvPvfakaggtikaeyvikygValiFllsGlslsteellanlrnwrlhllvllisflltplivlalvsllkaaldpelliGllll 100
                 +f + ++++ l+A ++P   k+  ++    +i y+  ++ l  Gl+l  +++ +  +n ++ ++ +++ ++++p+i++ lv +++  l+p+l+iG++l+
  EGE27773.1  14 TFAVWVVVFALIATQFPDAFKQ--LV---PWIPYLLGIVMLGMGLTLTFKDFGEVTKNPKAVIIGVILQYVVMPVIAFLLVQAFR--LPPDLAIGVILV 105
                 5888899999999999987774..33...4789***************************************************8..5*********** PP

    SBF_like 101 aalPtTvssnvvmtsqAgGnealalceavignllGvfltPalvqlllsgssvsvdyaevlkklllsvllPlvvGqvlqkifpklvkrlkkllkkvdslv 199
                  ++P   ssnv+ t  A+Gn+al++  ++++ ll+++ltPa++ l+  ++  +vd++ ++ ++l  vllP+++G +++ +f++ v+++++++  ++ ++
  EGE27773.1 106 GCCPGGTSSNVI-TFLAKGNTALSVACTTLSTLLAPILTPAVFYLFA-SQWLQVDAGGMFVSVLKMVLLPVFIGLIIRSLFKQKVQKVSQTMPLISVIA 202
                 **********85.99****************************9998.89************************************************* PP

    SBF_like 200 lllivytsfstafaqgaftsvshiillvifnvallLl.lvvlvillllarllklskedeiavlfcgsaKslalgvplisvlfgsnpqlgllllPlllyh 297
                 ++liv   ++ + ++++++s     l ++f+  ++L+  +++++ +++a++++l+  d++av          lg  l++v f+ np   l+++P  ++ 
  EGE27773.1 203 IILIVSAVVAVS-KDRIIESG----LFIFFV--VALHnGFGYLVGYAAAQIFRLPLHDSKAVAIEVGMQNSGLGAALAAVHFKMNP---LIAVPSAIFS 291
                 ****97666655.55665443....333332..3333134567789******************9999999***********9885...*********9 PP

    SBF_like 298 liqlvvaavlvsrlr 312
                 + + + + +l+  ++
  EGE27773.1 292 VWHNISGPILAMIFS 306
                 999999999988775 PP

>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   7.7     5e-08   0.00018     257     383 ..      17     143 ..       9     148 .. 0.80
   2 ?   -0.3   5.3     0.077   2.8e+02      30      92 ..     130     192 ..     119     213 .. 0.81
   3 ?    0.2   0.1     0.053   1.9e+02      65     108 ..     224     267 ..     204     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5e-08
   Mem_trans 257 ilslvsfkwnvimpkiiqksisilgdaglpmalfslGlfLalqpkkiacgnsvatfa..lavRlilgPlvmlvavlavgLrgslllvaivqaAlPqgiv 353
                 ++++v  ++   +p+ +++ +  +    l+++++ +Gl+L  ++   +++ + ++++  +++ ++++P++ +++v a+ L+ +l  ++i++   P g+ 
  EGE27773.1  17 VWVVVFALIATQFPDAFKQLVPWIP-YLLGIVMLGMGLTLTFKD-FGEVTKNPKAVIigVILQYVVMPVIAFLLVQAFRLPPDLAIGVILVGCCPGGTS 113
                 5666666666677777777777774.579************886.44555555445557**************************************** PP

   Mem_trans 354 lfviAkeynvherelstllifgmlialpit 383
                 + vi+ +   ++++  +  ++++l+a + t
  EGE27773.1 114 SNVITFLAKGNTALSVACTTLSTLLAPILT 143
                 *****9998888888888888888775555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.077
   Mem_trans  30 qcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgsl 92 
                 +c  ++++ + + +P+ +  f sq  + +   +f+ ++ +v+l v+i+l++  l+ + ++  +
  EGE27773.1 130 ACTTLSTLLAPILTPAVFYLFASQWLQVDAGGMFVSVLKMVLLPVFIGLIIRSLFKQKVQKVS 192
                 689999999999******999999999999999999999999999999999988876444433 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.053
   Mem_trans  65 ladvlvklivlillllgallskifkgslewtitlfslstlpNtl 108
                 ++  +v l  +++ l+g+  ++if+++l  ++ + + + ++N++
  EGE27773.1 224 FIFFVVALHNGFGYLVGYAAAQIFRLPLHDSKAVAIEVGMQNSG 267
                 5556667777899999******************9999999987 PP

>> TssN  Type VI secretion system, TssN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   5.1   3.3e-05      0.12       7     139 ..      44     175 ..      39     177 .. 0.87
   2 ?    3.8   6.6    0.0089        32       3      92 ..     165     255 ..     163     279 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
        TssN   7 lpllavilllilsliakknkllkkkkliiyiLlaglvlalpgllgflknefvpygyillqilylllGilhlylllkkffkelkekkilfeilltlivil 105
                 l ++++ ++l l ++   + +++ k +ii ++l  +v+ ++++l      + p   i + ++    G    + +++ ++k ++  +++ ++l tl++ +
  EGE27773.1  44 LGIVMLGMGLTLTFKDFGEVTKNPKAVIIGVILQYVVMPVIAFLLVQAFRLPPDLAIGVILVGCCPGGTSSN-VITFLAKGNTALSVACTTLSTLLAPI 141
                 34566677777888888888999***********************************************99.9999999999999************* PP

        TssN 106 lglvlfvlvfnllselqygvwaatsllvfiipll 139
                 l  ++f+l  +   +++ g + ++ l ++++p++
  EGE27773.1 142 LTPAVFYLFASQWLQVDAGGMFVSVLKMVLLPVF 175
                 ******9999888888877777777777777765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0089
        TssN   3 kylllpllavilllil.sliakknkllkkkkliiyiLlaglvlalpgllgflknefvpygyillqilyll..lGilhlylllkkffkelkekk 92 
                 ++l ++ll v ++li+ sl+++k +++++   +i   +++++l + ++++  k+ ++  g++++ +++l   +G+l  y++ + f+  l+++k
  EGE27773.1 165 SVLKMVLLPVFIGLIIrSLFKQKVQKVSQTMPLIS--VIAIILIVSAVVAVSKDRIIESGLFIFFVVALHngFGYLVGYAAAQIFRLPLHDSK 255
                 55556666555554441455555555555554444..45566667788888999999999988888888612455556666666666665555 PP

>> DUF1673  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.4      0.63   2.3e+03      77      93 ..      60      79 ..      35      94 .. 0.61
   2 ?   12.3   1.4   2.9e-05       0.1      80     160 ..     133     232 ..      99     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.63
     DUF1673 77 lGi...nlialliglllsll 93
                 G+   n  a++ig++l  +
  EGE27773.1 60 FGEvtkNPKAVIIGVILQYV 79
                34456677777777774332 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.9e-05
     DUF1673  80 nlialligll...................lsllliiltwkkqmqiyddikralvektvdkisikrilfkpvvI..iikievtenenpvlrwllrllllv 157
                 +l++ll+ +l                   ++++++++ + +  ++   i r+l +++v+k+s + +l+  + I  i+ ++v   + ++++  l ++++v
  EGE27773.1 133 TLSTLLAPILtpavfylfasqwlqvdaggMFVSVLKMVLLP--VFIGLIIRSLFKQKVQKVSQTMPLISVIAIilIVSAVVAVSKDRIIESGLFIFFVV 229
                 44555555556666666667777777777778888888876..56666799999**************999999999*************999999999 PP

     DUF1673 158 ifl 160
                 ++ 
  EGE27773.1 230 ALH 232
                 876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1134  (0.0632495); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2371.71
//
Query:       EGE27774.1  [L=383]
Description: chaperone protein DnaJ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-44  151.6   0.2      2e-44  151.2   0.2    1.2  1  DnaJ_C           DnaJ C terminal domain
    4.7e-27   93.9   2.4    8.9e-27   93.0   2.4    1.5  1  DnaJ             DnaJ domain
    2.5e-15   56.6  18.1    6.3e-15   55.3  18.1    1.7  1  DnaJ_CXXCXGXG    DnaJ central domain
     0.0011   18.9  14.8      0.055   13.4   5.6    2.9  2  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
     0.0032   17.4  18.1       0.07   13.1   7.6    2.6  2  Cytochrome_C7    Cytochrome c7 and related cytochrome c
     0.0047   17.3  16.7      0.093   13.2  15.3    2.7  2  Cytochrom_c3_2   Cytochrome c3
  ------ inclusion threshold ------
      0.015   15.3   0.5      0.015   15.3   0.5    3.8  4  zf_CopZ          Zinc binding domain
       0.34   11.3   1.9       0.38   11.1   0.2    1.9  3  Efg1             rRNA-processing protein Efg1
       0.81   10.1  24.0        2.3    8.6   4.5    4.4  3  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
          6    6.5  12.5       0.14   11.8   0.9    2.2  2  TackOD1          Thaumarchaeal output domain 1


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.2   1.1e-47     2e-44       3     148 .]     128     339 ..     126     339 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 1.1e-47
                 EEEEE-HHHHHH-.EEE.EEEE.....................................................................TEEEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx..............................................................xxxxxxxxxxxx RF
      DnaJ_C   3 veleisleelykGktkkikikrnvi..............................................................kkekktlevkip 39 
                 ++++++lee++kG++k+i+++  v                                                               +++++tlev+ip
  EGE27774.1 128 YNITLTLEEAVKGCKKQISYQTSVSchtchgkgavkdsdvvtcstchgqgqvrmqqgffvmqqtcpdchgtgkqiknpcpdchgqgkTVQQQTLEVSIP 226
                 799*****************99988*************************************************************8888889****** PP

                 TT--TT-EEEETT-SS..SS..S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE...--TT-EEEETT-S-EET... CS
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C  40 aGikdgqkirlegeGd..eeggepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklki...tqpgevlrikgkGmpklkkp 133
                 aG++dg+++rl+g+G+   +g+++GDl+v+++vkph++F+r+g dl+++++is+  a+lG+++e+ptldgkvk+k+   tq+g+ lr++gkG+ +++ +
  EGE27774.1 227 AGVDDGDRVRLAGKGEagDQGMPSGDLYVEVRVKPHEIFTRNGADLHMDIPISMISAALGDEIEIPTLDGKVKIKVaegTQSGKLLRVRGKGVTTVQ-G 324
                 ****************87666***************************************************************************8.* PP

                 TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxx RF
      DnaJ_C 134 gkrGdlyvevkvefP 148
                 +++Gdl++++ v++P
  EGE27774.1 325 RMQGDLICRILVQTP 339
                 *************99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   2.4     5e-30   8.9e-27       1      63 []       4      66 ..       4      66 .. 0.99

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 5e-30
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                d+Y+iLgv+++a+e+eIkka+rk+a+kyHPD+np++peaeek ke ++Aye+LsdpekR+ YD
  EGE27774.1  4 DFYSILGVDRTADEKEIKKAFRKIAMKYHPDRNPDNPEAEEKLKEASKAYETLSDPEKRATYD 66
                79************************************************************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3  18.1   3.5e-18   6.3e-15       1      67 []     153     213 ..     153     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 3.5e-18
  DnaJ_CXXCXGXG   1 CkkCkGsgakk.gkkktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C++C+G+ga k +++ tC+tC+G+G+vr++q   g+fv  +q+tCp+C+GtGk i  k++C++C+G+g
     EGE27774.1 153 CHTCHGKGAVKdSDVVTCSTCHGQGQVRMQQ---GFFV--MQQTCPDCHGTGKQI--KNPCPDCHGQG 213
                    ********96626699*********998888...5566..579************..889******97 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   1.7   0.00036      0.65      11      47 ..     151     184 ..     148     189 .. 0.89
   2 !   13.4   5.6   3.1e-05     0.055      11      41 ..     190     214 ..     187     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00036
                 EE-TTTTTTSEETTE......E-TTTTTSSEEE-HHH CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkglipTaqG 47 
                 + C +C+g G ++       + C  C G+g +  +qG
  EGE27774.1 151 VSCHTCHGKGAVKDS---DVVTCSTCHGQGQVRMQQG 184
                 68*********9998...689*********9998888 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.1e-05
                 EE-TTTTTTSEETTE......E-TTTTTSSE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgl 41 
                 ++C+ C+g+Gk   +      +CP+C G+g 
  EGE27774.1 190 QTCPDCHGTGKQIKN------PCPDCHGQGK 214
                 79*************......*******985 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   7.6   3.9e-05      0.07      36      72 ..     138     174 ..     128     175 .. 0.81
   2 !    7.6   9.7    0.0022       3.9      16      72 ..     170     210 ..     170     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
  Cytochrome_C7  36 ekgkskkaeves.ltCgaCHdgknafsvakkaeCakCH 72 
                     kg  k+++ ++ ++C++CH +  ++   +  +C++CH
     EGE27774.1 138 VKGCKKQISYQTsVSCHTCHGKGAVK-DSDVVTCSTCH 174
                    455666778888899*******9999.5799******* PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0022
  Cytochrome_C7  16 CtdCHsklfeskakkkmaemekgkskkaevesltCgaCHdgknafsvakkaeCakCH 72 
                    C++CH++         +  m++g      v + tC +CH   ++     k+ C +CH
     EGE27774.1 170 CSTCHGQG--------QVRMQQGFF----VMQQTCPDCHGTGKQI----KNPCPDCH 210
                    99***999........445666666....45578*****999999....79****** PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2  15.3   5.2e-05     0.093       4      79 ..     148     210 ..     145     211 .. 0.81
   2 !    9.5   3.4   0.00075       1.3       6      43 ..     189     220 ..     186     228 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.2e-05
                     CCT.TGGGTSSSST-SSTTHHHHHHHHHHH--HHHCHTTSST.TSSBTTSSCTSSS-GGGTS-TTTSBT-GGGGT- CS
  Cytochrom_c3_2   4 kegvkCadCHtkekpkkdkaveeekClsCHgkleelakktkeakeanphkshekeleCteCHkeHkksekvCaeCH 79 
                     +++v+C++CH+k  +k   + +  +C +CHg+ +   ++            +  + +C +CH + k+ ++ C +CH
      EGE27774.1 148 QTSVSCHTCHGKGAVK---DSDVVTCSTCHGQGQVRMQQ----------GFFVMQQTCPDCHGTGKQIKNPCPDCH 210
                     67899*******9984...455789******98763333..........34577889******************* PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00075
                     T.TGGGTSSSST-SSTTHHHHHHHHHHH--HHHCHTTS CS
  Cytochrom_c3_2   6 gvkCadCHtkekpkkdkaveeekClsCHgkleelakkt 43 
                     + +C dCH++ k+       ++ C  CHg+ ++++++t
      EGE27774.1 189 QQTCPDCHGTGKQ------IKNPCPDCHGQGKTVQQQT 220
                     4467777777764......2456777777777777665 PP

>> zf_CopZ  Zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4       0.8   1.4e+03       3      12 ..     152     161 ..     150     168 .. 0.84
   2 ?   -1.1   0.4         1   1.8e+03       3      12 ..     169     178 ..     166     179 .. 0.89
   3 ?    7.0   0.6     0.003       5.4       2      16 ..     190     204 ..     189     205 .. 0.91
   4 ?   15.3   0.5   8.3e-06     0.015       1      22 [.     203     224 ..     203     232 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.8
                 B-TTT--B-E CS
     zf_CopZ   3 kCPvCgkkGk 12 
                 +C  C+ kG 
  EGE27774.1 152 SCHTCHGKGA 161
                 7******995 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1
                 B-TTT--B-E CS
     zf_CopZ   3 kCPvCgkkGk 12 
                 +C  C+ +G+
  EGE27774.1 169 TCSTCHGQGQ 178
                 7*******97 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.003
                 -B-TTT--B-EEE-H CS
     zf_CopZ   2 kkCPvCgkkGkkVkl 16 
                 ++CP C+  Gk++k+
  EGE27774.1 190 QTCPDCHGTGKQIKN 204
                 79**********996 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 8.3e-06
                 X-B-TTT--B-EEE-HHHHHHH CS
     zf_CopZ   1 kkkCPvCgkkGkkVkliTvkhl 22 
                 k+ CP C+ +Gk V++ T++  
  EGE27774.1 203 KNPCPDCHGQGKTVQQQTLEVS 224
                 689***************9865 PP

>> Efg1  rRNA-processing protein Efg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00021      0.38      34      93 ..      12      71 ..       7      76 .. 0.89
   2 ?   -3.7   0.0       8.4   1.5e+04      21      39 ..     129     147 ..     119     151 .. 0.65
   3 ?   -2.6   0.0       3.7   6.7e+03      23      44 ..     343     364 ..     333     375 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH CS
        Efg1 34 eaeleeaekkekekklakkYhkvrFfErkKatRklkrlkkqleeledeeekeelekklee 93
                +++++e+e k+  +k+a kYh  r  +   a+ klk+++k+ e+l+d e+++++ +  ++
  EGE27774.1 12 DRTADEKEIKKAFRKIAMKYHPDRNPDNPEAEEKLKEASKAYETLSDPEKRATYDRMGHS 71
                5667889999999************************************99998887666 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.4
                 HHHHHHHHHHHHHHHHHHH CS
        Efg1  21 evreekereLkaleaelee 39 
                 ++  + e+++k ++++++ 
  EGE27774.1 129 NITLTLEEAVKGCKKQISY 147
                 5666677777777777655 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHHHHHHHHHH CS
        Efg1  23 reekereLkaleaeleeaekke 44 
                  +e++  L++l+  l+ ++++e
  EGE27774.1 343 TSEQKDLLRQLQGMLSTENSSE 364
                 4555555555555555444444 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1    0.0078        14      13      24 ..     152     163 ..     144     168 .. 0.79
   2 ?    4.8   2.2      0.02        36      13      22 ..     169     178 ..     165     184 .. 0.84
   3 ?    8.6   4.5    0.0013       2.3       3      45 ..     181     229 ..     179     252 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0078
  Cytochrome_CBB3  13 nCasCHgkggag 24 
                      +C +CHgkg++ 
       EGE27774.1 152 SCHTCHGKGAVK 163
                      8******99875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.02
  Cytochrome_CBB3  13 nCasCHgkgg 22 
                      +C++CHg+g+
       EGE27774.1 169 TCSTCHGQGQ 178
                      7******776 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0013
  Cytochrome_CBB3   3 aaaGaalykknCasCHgkggag....pslagr..dwepdalvdiiknGk 45 
                      +++G  +++++C  CHg+g++     p+ +g+  ++++++l+ +i  G+
       EGE27774.1 181 MQQGFFVMQQTCPDCHGTGKQIknpcPDCHGQgkTVQQQTLEVSIPAGV 229
                      67888899*********77664678888887754666777777776664 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   4.4      0.39     7e+02      97     130 ..     144     174 ..     128     181 .. 0.57
   2 ?   11.8   0.9     8e-05      0.14      68      96 ..     184     212 ..     175     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.39
     TackOD1  97 dieeqelihhftCgnvgpeeeflkegkleCpkCk 130
                 +i+ q+++++ tC   g     ++++ ++C++C+
  EGE27774.1 144 QISYQTSVSCHTCHGKGAV---KDSDVVTCSTCH 174
                 5666666666666444333...344555566665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8e-05
     TackOD1  68 elvdrirlCpsCksghlnvrevCpkCkSi 96 
                  ++  +++Cp C++   ++++ Cp+C+  
  EGE27774.1 184 GFFVMQQTCPDCHGTGKQIKNPCPDCHGQ 212
                 5677789*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 2803.68
//
Query:       EGE27775.1  [L=30]
Description: hypothetical protein EA1_00250 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 234.33
//
Query:       EGE27776.1  [L=333]
Description: hypothetical protein EA1_00255 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-11   43.6   0.0    6.1e-11   42.7   0.0    1.5  1  Thioredoxin_2  Thioredoxin-like domain
    5.6e-07   28.9   0.0     0.0016   17.8   0.0    2.5  2  DsbC_N         Disulfide bond isomerase protein N-terminus
     0.0084   15.9   0.0      0.027   14.2   0.0    1.9  2  DSBA           DSBA-like thioredoxin domain
  ------ inclusion threshold ------
       0.17   12.2   0.1       0.31   11.4   0.1    1.3  1  ATP-synt_E_2   ATP synthase epsilon subunit


Domain annotation for each model (and alignments):
>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.4e-14   6.1e-11       3     108 ..     204     329 ..     202     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.4e-14
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkel..ddvtvrvllfplkpsfepkavaiwcakekk.......kafkd...............ieenvelar 74 
                      +k vl++ +d +CpyCk l++ ++el  ++vt++++ +p+ +++   + +iwc+++ +        a+k+               + + ++ + 
     EGE27776.1 204 TREKSVLYIASDINCPYCKILHERIDELnlQGVTIKIIGYPIYDESRLPMNHIWCTTDNAkraallsAAMKGiipnsqaqcqhnpnpLSAIQKQVM 299
                    56899************************************66777************99555555444444999999999999999777777777 PP

  Thioredoxin_2  75 kygvrgtPtivfldgkeivarlpGyvpaeeleal 108
                     + + gtP+++  +g+    + +G ++ +e+ + 
     EGE27776.1 300 PLAIMGTPAVFDAQGR----EFTGDLSNHEIYQF 329
                    789999***9999999....89999998888776 PP

>> DsbC_N  Disulfide bond isomerase protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.6e-07    0.0016       2      47 ..      37      83 ..      36      84 .. 0.93
   2 !    8.5   0.0   0.00029       1.3      21      53 ..     136     170 ..     126     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.6e-07
                HHHHTTT..--S----B-SSTTEE--EE.TTEE-EEESSSS-EE-S- CS
      DsbC_N  2 aaLekllpnlkvesvspspipGLyEVvi.ggqvlYtdadgkyliqGn 47
                ++L++++  ++v +v+ s++p L ++++ +g+ l +++d +y+iqG 
  EGE27776.1 37 TRLASAGLATPVVKVTQSAVPKLWQITLaDGNHLLISEDLDYIIQGK 83
                5788888899************************************5 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00029
                 STTEE--EETT..EE-EEESSSS-EE-S-----TT CS
      DsbC_N  21 ipGLyEVvigg..qvlYtdadgkyliqGnlydlkt 53 
                 i G+ + ++g+   ++ +++dg+yl+ G +  +k+
  EGE27776.1 136 IQGVLWGISGQgdTTFLISSDGRYLMDGAMASIKN 170
                 66666666655568999***********9988775 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.1e-06     0.027       6      39 ..     214     245 ..     209     277 .. 0.80
   2 ?   -2.1   0.0       0.6   2.7e+03     158     181 ..     296     319 ..     282     328 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.1e-06
                 EBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE-SS CS
        DSBA   6 fDvlCPyCylgkerleklaarspdvkvvlrpfel 39 
                 +D++CPyC++  er+++l  +   v++++  +++
  EGE27776.1 214 SDINCPYCKILHERIDELNLQG--VTIKIIGYPI 245
                 8****************98665..5555555444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.6
                 HHHHHTT-SSSSEEEE.TTCEEEES CS
        DSBA 158 aaaqslgvtGvPtvvv.dgkrmvfG 181
                 ++   l + G+P+v+  +g+  ++G
  EGE27776.1 296 KQVMPLAIMGTPAVFDaQGR-EFTG 319
                 55556789999999864555.5555 PP

>> ATP-synt_E_2  ATP synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   6.8e-05      0.31      10      47 ..     194     232 ..     190     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.8e-05
  ATP-synt_E_2  10 DKYlniLkskLdeKKs.ElLkkiNmEYEKlLKqRLdeLe 47 
                   DK l i  sk  eK    + ++iN  Y K+L +R+deL+
    EGE27776.1 194 DKDLVIYPSKTREKSVlYIASDINCPYCKILHERIDELN 232
                   777777777777776425789****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2409.33
//
Query:       EGE27777.1  [L=234]
Description: ribosomal small subunit pseudouridine synthase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-14   54.8   0.0    1.7e-14   54.2   0.0    1.2  1  PseudoU_synth_2  RNA pseudouridylate synthase
    5.7e-09   35.5   0.0    9.7e-09   34.8   0.0    1.4  1  S4               S4 domain
  ------ inclusion threshold ------
       0.15   12.4   0.0       0.28   11.5   0.0    1.4  1  DUF1330          Domain of unknown function (DUF1330)


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   2.8e-18   1.7e-14       2     159 ..      63     196 ..      62     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 2.8e-18
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      +++++KP g  ++ +       ++    t+  a +e+ +l++ +RLD++t+G lll+++++++++++   ++r+  K+Y+ ++   +  +++a 
       EGE27777.1  63 YILLYKPDGFECTLKP------KEYPMVTDLIAVPEVANLRIAGRLDVDTTGALLLSDDGAWLHRVTS--PKRHQPKQYQLTLA--DAMDKDAQ 146
                      99**************......999999****************************************..*************5..44444444 PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      +  i++          +   l+g+ + t+  vl+        + + + l+l +G+ hQ+++++a
       EGE27777.1 147 AYAIKQ--------IANGILLEGETEKTRPAVLSFI------DETHAVLTLTEGKYHQVKRMMA 196
                      444444........6689999999999999999999......88899999************98 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.6e-12   9.7e-09       1      48 []       1      48 [.       1      48 [. 0.97

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.6e-12
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-.TTCEE CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVk.pgDvi 48
                +RLdk+l+++   s r+ A++   +G ++VNG ++kd s+ V+ ++D+i
  EGE27777.1  1 MRLDKFLSKATELS-RKDAKKVLHAGEITVNGTIIKDSSHHVDlANDEI 48
                8*******999998.****************************999987 PP

>> DUF1330  Domain of unknown function (DUF1330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.7e-05      0.28       4      79 ..     118     194 ..     116     203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.7e-05
     DUF1330   4 wiaqvkvtdpeaykeYaalaeaalakyggrflvrg.gkvevlEGdeeptrlvvieFpsveaarawyeSpeYqaakal 79 
                 w+ +v+  ++ + k+Y+   ++a+ k    + +++ ++   lEG++e+tr  v++F +  +a    +  +Y ++k++
  EGE27777.1 118 WLHRVTSPKRHQPKQYQLTLADAMDKDAQAYAIKQiANGILLEGETEKTRPAVLSFIDETHAVLTLTEGKYHQVKRM 194
                 566666777777889999999998887777666652566789*********************99999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1872.77
//
Query:       EGE27778.1  [L=197]
Description: hypothetical protein EA1_00265 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-31  108.4   0.0    3.7e-31  107.6   0.0    1.4  1  UPF0029   Uncharacterized protein family UPF0029
      2e-08   34.0   0.1    3.2e-08   33.3   0.1    1.4  1  DUF1949   Domain of unknown function (DUF1949)


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   0.0   4.1e-35   3.7e-31       1     104 [.      17     123 ..      17     124 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 4.1e-35
                 TTEEEEEEEEE-SSHHHHHHHHHHH--..TTSSEEEEEE....EE....TTEE-TTSST..SHHHHHHHHHHTTB-SEEEEEEEE--SS--HHHHH.HH CS
     UPF0029   1 kkSrFiavlaaveseeevkaileelkkenkkathniyAyrlrqkvekvnedsdddgEpa..AGkkllelLekeklenvlvvvtRwfGGikLGpgrl.ra 96 
                 kkS+F+a++++++++e++ + +++l++++ +a+h++y+y + +  +++++++dddgEp+  AG+++l++L+++ + n++++v+R+fGGikLG+g+l ra
  EGE27778.1  17 KKSEFLAFAYPISTREQAMSHVQNLRTRYLDARHHCYGYIIGNPHNTTSAGFDDDGEPNgtAGRPILSVLQHKAIGNCIIIVVRYFGGIKLGAGGLtRA 115
                 89****************************************999999999************************************************ PP

                 HHHHHHHH CS
     UPF0029  97 iseaarea 104
                 +++aa+ a
  EGE27778.1 116 YAAAAQMA 123
                 ****9976 PP

>> DUF1949  Domain of unknown function (DUF1949)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   3.6e-12   3.2e-08       1      48 [.     140     187 ..     140     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.6e-12
     DUF1949   1 ltvdYadlgkverlLeqfgativdteYtddVtltlavpeeeveafkaa 48 
                 l++ +a+++ v++l+ q g++i+ ++Y +dV +t++v++  +e+f + 
  EGE27778.1 140 LKISFAHEAQVRYLIHQVGGRILKVDYKTDVRMTIEVEQKVLETFVES 187
                 6799*****************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1675.63
//
Query:       EGE27779.1  [L=108]
Description: TraR/DksA family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-10   39.5   0.5    5.8e-10   38.9   0.5    1.3  1  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
  ------ inclusion threshold ------
      0.023   14.9   0.2      0.036   14.2   0.2    1.3  1  DUF2379       Protein of unknown function (DUF2379)
      0.031   13.8   0.1       0.05   13.1   0.1    1.3  1  TF_Zn_Ribbon  TFIIB zinc-binding
       0.59   10.5   5.3        5.1    7.6   0.4    2.3  2  V-SNARE       Vesicle transport v-SNARE protein N-terminus


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.5   1.3e-13   5.8e-10       1      28 [.      77     104 ..      77     105 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.3e-13
  zf-dskA_traR   1 giygsCeeCGEpIpeaRlralPgarlCv 28 
                   g ygsC eCGE I e+Rl+ +P++++C+
    EGE27779.1  77 GEYGSCVECGELINENRLKTVPYTPYCI 104
                   68*************************9 PP

>> DUF2379  Protein of unknown function (DUF2379)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   8.1e-06     0.036      56     104 ..      11      59 ..       3      63 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.1e-06
     DUF2379  56 AlaLlreiarRiregskrLvdallrmlrlrdagDldgArqelrevLavE 104
                  laL +e + Ri + s+ +++   + +++ d+  + + r e+r+ L +E
  EGE27779.1  11 LLALKKEYQSRIDKISDHISNPKDQLQQHWDDQAVAASRDEMRKALLIE 59 
                 5678899***************************************998 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.1e-05      0.05      13      34 ..      72      94 ..      65      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
                  EETSTTCE.EESSSSBEEEECCC CS
  TF_Zn_Ribbon 13 eDpergel.vCtdCGlVlednsi 34
                  +  e+ge+  C +CG+++ +n  
    EGE27779.1 72 RRIEQGEYgSCVECGELINENRL 94
                  66799**************9976 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.6    0.0059        26      62      78 ..       3      19 ..       1      20 [. 0.88
   2 ?    7.6   0.4    0.0011       5.1      14      45 ..      42      75 ..      29      76 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0059
     V-SNARE 62 klreykselkklkkelk 78
                 l  yk++l  lkke++
  EGE27779.1  3 NLDAYKQDLLALKKEYQ 19
                6889***********98 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0011
     V-SNARE 14 rlsslag..eerkaalreiekkldeaeelldqMe 45
                + + +a+  e rka+l e+e+ l +++  l++ e
  EGE27779.1 42 DQAVAASrdEMRKALLIEAEQGLTQVNGALRRIE 75
                44433332589**************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 937.38
//
Query:       EGE27780.1  [L=298]
Description: putative pseudouridylate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-24   84.9   0.0    8.3e-24   84.5   0.0    1.1  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   4.6e-28   8.3e-24       2     159 ..      93     240 ..      92     241 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 4.6e-28
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      l+vv+KP+ ++v+p +      +++t  t  ++ + + +l++ hRLDk+t Gl++++k+ e  ++ + +f++r++ K Y a+    p+ +++++
       EGE27780.1  93 LLVVDKPHFLTVSPAG----GYVQQTLLTRLKQTTGNPHLSPAHRLDKQTAGLMIFTKTCESRRAYQSLFNDRQINKIYHAIA---PMTQAHQF 179
                      79**************....99999*********************************************************6...89999999 PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                        ++s   +++e ++  a + ++ ++ t + +l+     +++k +++el++ tG+ hQ+Rvhl+
       EGE27780.1 180 PLQVSLPLVRGEPFYTMAVGIGEPNTHTDIDILAVS---EDGKWAKYELKPTTGKLHQLRVHLN 240
                      9999999*****************************...***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2575.36
//
Query:       EGE27781.1  [L=97]
Description: hypothetical protein EA1_00280 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-05   22.4   0.3    0.00033   20.3   0.0    2.1  2  SHOCT     Short C-terminal domain
  ------ inclusion threshold ------
       0.16   12.5   1.6       0.29   11.6   1.6    1.4  1  TraL      TraL protein


Domain annotation for each model (and alignments):
>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.12   1.1e+03      13      18 ..      21      26 ..      21      26 .. 0.94
   2 !   20.3   0.0   3.7e-08   0.00033       2      28 .]      69      95 ..      68      95 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.12
       SHOCT 13 GeIteE 18
                G+I+eE
  EGE27781.1 21 GVISEE 26
                99***9 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 3.7e-08
       SHOCT  2 aLekLkeLyarGeIteEEFeakKakLL 28
                +L+kL+ L++ G+Ite+EF   K kLL
  EGE27781.1 69 ELAKLAYLRQTGVITEDEFLFCKSKLL 95
                89*****************99999998 PP

>> TraL  TraL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.6   3.2e-05      0.29      21      57 ..      11      47 ..       7      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.2e-05
        TraL 21 alvillllvvgillgqfviglvlglllvlllrklkkg 57
                +++ +ll+v+g+++++f++++++ +l+++++r +k++
  EGE27781.1 11 LVITILLIVFGVISEEFIFVVLFFILIYWGVRIIKNN 47
                5778999*************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 734.79
//
Query:       EGE27782.1  [L=403]
Description: serine/threonine transporter SstT [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-62  211.5  44.7    2.3e-62  211.3  44.7    1.0  1  SDF       Sodium:dicarboxylate symporter family


Domain annotation for each model (and alignments):
>> SDF  Sodium:dicarboxylate symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.3  44.7   1.3e-66   2.3e-62       1     386 [.      13     394 ..      13     397 .. 0.94

  Alignments for each domain:
  == domain 1  score: 211.3 bits;  conditional E-value: 1.3e-66
         SDF   1 LllqiliglvlGlviGllelvkelaalisplgdlfinllkmlivPlvfasiisgiaslgdakklgklglktllyfllttliAaiiglilalllkpgsel 99 
                 L+  i+++lv+G++iG+  ++++++  + +lg++f+ +lk +   lvf+ +  ++++ + + +  ++   +++++l+ t+ Aa++++ + +++     l
  EGE27782.1  13 LVPLIVLALVIGTIIGV--VAPSFGLSLGILGSIFVGALKAVAPILVFVLVLAAVSNQR-IGADSRIK-PIIFLYLMGTFSAALVAVGASFMFPTELVL 107
                 6789************9..**********************99999*999999999995.55555555.555666777889999999999999999999 PP

         SDF 100 aleassakeaekketdslldlilslipsnifealaegnvlavivfailfGialaalgekgepllkffeslnevvmkvvkivmklaPigvfaliaslvas 198
                 ++++s +++a+++  + l++l+++l+  n++++la+ n ++++  a+l+G+al  +    e++l+++++l  +v++vvk++++laP+g+++l+as+va+
  EGE27782.1 108 NNIESIEQAAPQSLREVLTNLVMNLV-ANPVASLANANYMGILTWAVLIGLALRHV---TETTLHVVSDLGMAVTSVVKWIIALAPFGILGLVASTVAE 202
                 99999999999999998999999988.8999*************************...6789************************************ PP

         SDF 199 kglgalsslakflltvylglaihllivlpllllvltkknplkf.lkkilpalltAfsTaSSaAtLPvtlecaeknlgvsesiasfvlPlGatinmdGta 296
                 +g++al+ +a +l++++  +++++l++ p+++ v+t+knp+ + +  +++  +tAf T+SSaA +Pv+++ a+k lg+se+++s+ +PlG+ inm G+a
  EGE27782.1 203 TGIQALVGYARLLAVLVGSMLFIALVMNPIIVAVMTRKNPYPLvFTCLRESGVTAFFTRSSAANIPVNMNLARK-LGLSEDTYSVSIPLGSAINMAGAA 300
                 ******************************************9788899999**********************.9*********************** PP

         SDF 297 lyeavaaifiaqlfgvelslgqllllvlvatlasiGaagvPgaglvalllvlsalglp....vegialilaidrllDmfrTavNvtGdavaali 386
                 +++ ++++ +a+++g+e+s+g  +ll++v  l++ Ga+gv+g++l+++ l ++ +++p    ++++a+ + i +++D+++Ta+N + d+++++ 
  EGE27782.1 301 ITINILTLAAAHTLGIEVSFGAAVLLAIVGSLSACGASGVAGGSLLLIPLACNLFNIPndiaMQVVAIGFIIGVVQDSAETALNSSTDVLFTAA 394
                 **********************************************************77655669999999*****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3169.94
//
Query:       EGE27783.1  [L=329]
Description: cobalamin synthesis protein P47K [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-44  150.9   0.0    4.1e-44  150.3   0.0    1.3  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    0.00086   19.3   0.2        1.3    9.0   0.0    2.2  2  AAA_14           AAA domain
     0.0055   16.4   0.0      0.016   15.0   0.0    1.7  1  AAA_29           P-loop containing region of AAA domain
     0.0062   16.4   0.1       0.16   11.8   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
     0.0072   16.1   0.2       0.16   11.7   0.0    2.6  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0099   15.8   0.1      0.031   14.2   0.0    1.9  2  CobW_C           Cobalamin synthesis protein cobW C-terminal 
  ------ inclusion threshold ------
      0.011   16.2   0.3      0.054   14.0   0.3    2.2  1  ABC_tran         ABC transporter
      0.012   15.1   1.3        3.7    7.0   0.1    2.5  3  GTP_EFTU         Elongation factor Tu GTP binding domain
      0.013   15.9   0.1      0.031   14.7   0.1    1.9  1  AAA_16           AAA ATPase domain
      0.031   14.1   0.1       0.61    9.8   0.0    2.1  2  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.036   14.2   0.8       0.15   12.1   0.0    2.3  2  MMR_HSR1         50S ribosome-binding GTPase
      0.036   14.3   0.6        0.4   10.9   0.1    2.4  2  AAA_22           AAA domain
       0.04   14.4   0.3       0.64   10.6   0.0    2.3  2  AAA_18           AAA domain
      0.041   13.9   0.3       0.17   11.9   0.0    2.0  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.048   12.9   0.4       0.79    8.9   0.0    2.1  2  Septin           Septin
       0.15   12.5   0.3       0.37   11.3   0.3    1.5  1  AAA_23           AAA domain
       0.16   10.6   2.2        0.3    9.8   1.4    1.8  2  SNF2_N           SNF2 family N-terminal domain
       0.19   10.7   0.5        1.9    7.4   0.0    2.1  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   0.0   4.1e-47   4.1e-44       1     176 [.       8     183 ..       8     184 .. 0.96

  Alignments for each domain:
  == domain 1  score: 150.3 bits;  conditional E-value: 4.1e-47
                 EEEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECTTTTHHHH CS
        cobW   1 pvtvltGflGsGKTtLlnhllenraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeereerldviliEttGlaePapv 99 
                 p+t++tGflG+GKTtL+n+l+++++++++a+++Nefg+++iD++l+++++  i e++ GciCct +  l+ +l +l +++ ++d+++iE tGla+P+++
  EGE27783.1   8 PTTLVTGFLGAGKTTLINALITHKSHQRWALLLNEFGQIGIDSALVTDDDIAIKEVNGGCICCTGQLPLQVALVRLINEH-HPDRLIIEPTGLAHPNEL 105
                 6899****************************************************************************.8***************** PP

                 ..HTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHHHTTS-EE CS
        cobW 100 ..afteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekleerlrqlnpeakvl 176
                    ++e+++++ ltl+av++v++a ++++e+ ++++ +  ++  ad++ +n  D+l++++  ++l+++++++n++a ++
  EGE27783.1 106 ldQLSEPHWQTTLTLNAVICVLSAPQWQQEKYRTHDGYIAHVRHADIVAINRHDTLTDHER-QALRAWIKSINEHAVII 183
                 65555******************************************************88.9***********99876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0026       2.6       5      27 ..      10      32 ..       7      52 .. 0.84
   2 !    9.0   0.0    0.0013       1.3      28     107 ..     147     222 ..     133     237 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0026
      AAA_14  5 lvitGaRrvGKTtllkqlikell 27
                 ++tG   +GKTtl++ li ++ 
  EGE27783.1 10 TLVTGFLGAGKTTLINALITHKS 32
                6899***************8877 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0013
      AAA_14  28 vkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpewekalkslvdeg..knldvivtGSnskllsk 107
                 v++ +i+ in  d  ++ +++    l+++ +++   +++ +++DE+   +e+ ++l     +   +  ++ +t Sns++ + 
  EGE27783.1 147 VRHADIVAINRHDTLTDHERQ---ALRAWIKSI---NEHAVIIDEAPLNQEIAEILLTTPHNAqkTTWRIRLTASNSMITQA 222
                 556677777777766655443...356666665...4578******9999999999888775533678********998754 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.6e-05     0.016      24      44 ..       9      29 ..       2      34 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-05
      AAA_29 24 atlltGpsGsGKSTllDAiqa 44
                +tl+tG  G+GK+Tl+ A+++
  EGE27783.1  9 TTLVTGFLGAGKTTLINALIT 29
                69**************99875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00016      0.16     101     124 ..       9      32 ..       2      45 .. 0.84
   2 ?    2.4   0.1      0.13   1.3e+02      40      83 ..     145     184 ..     115     232 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
                  EEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpele 124
                  t+++ G  G+GK+tLinal+ +++
   EGE27783.1   9 TTLVTGFLGAGKTTLINALITHKS 32 
                  7889999************98654 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
                  HHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE-- CS
  RsgA_GTPase  40 vlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvs 83 
                  +++ ++    ++++n+ D l+++e  ++l++ +++++ + ++++
   EGE27783.1 145 AHVRHA---DIVAINRHDTLTDHE-RQALRAWIKSINEHAVIID 184
                  444444...46899********99.7777777777765555443 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00016      0.16       1      22 [.      10      31 ..      10      55 .. 0.84
   2 ?    0.4   0.0      0.44   4.4e+02     185     228 ..     109     151 ..     100     156 .. 0.78
   3 ?   -0.0   0.1      0.61   6.1e+02      39      75 ..     158     190 ..     134     202 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
  Viral_helicase1  1 ivvhGvpGcGKStlirkllrts 22
                     ++v G+ G+GK+tli  l+ ++
       EGE27783.1 10 TLVTGFLGAGKTTLINALITHK 31
                     589***************9883 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.44
  Viral_helicase1 185 vttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrk 228
                       + +h +  lt + V++vl+ + + +  + + +  ++A  Rh +
       EGE27783.1 109 LSEPHWQTTLTLNAVICVLSAP-QWQQEKYRTHDGYIAHVRHAD 151
                      5667778889999******977.55656667999****999975 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.61
  Viral_helicase1  39 kpklpnlsvrtvdsflmalvkstkgkililDEylllh 75 
                      ++ l++++   ++++ ++       + +i+DE+ l +
       EGE27783.1 158 HDTLTDHERQALRAWIKSIN----EHAVIIDEAPLNQ 190
                      45666666666777777765....4699999998755 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.2   3.2e+03      65      79 ..     135     157 ..     108     179 .. 0.55
   2 !   14.2   0.0   3.1e-05     0.031       8      77 ..     253     311 ..     246     324 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.2
      CobW_C  65 a........ededrrseLVfIGr 79 
                 +            r+  +V I r
  EGE27783.1 135 EkyrthdgyIAHVRHADIVAINR 157
                 23444444444445555555533 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.1e-05
      CobW_C   8 arrpfdperleelleeelpegilRaKGivwlagkpdalvlqgvggrlrlepagawwaaededrrseLVfI 77 
                 +  +fd   l+++l +   ++ lR+KG+v++ +   +l+++   ++++++ + a       + +s++ +I
  EGE27783.1 253 STWQFDSYHLQKWLLS--RPNYLRIKGVVHTLEG--WLLINITPESINITDTTA-------RDHSKIELI 311
                 55679999******99..78***********999..*******99999993333.......334444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   5.4e-05     0.054      14      64 ..      10      68 ..       4     247 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.4e-05
                EEEEESTTSSHHHHHHHHTTSS--........SEEEEEETTCEGGGB-HHHCCHCEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkp........teGeilldgkdlkeqeleslrkeigvl 64
                + ++G  GaGK+tL+++l+ + +         + G+i +d++ ++++++ + + + g++
  EGE27783.1 10 TLVTGFLGAGKTTLINALITHKSHqrwalllnEFGQIGIDSALVTDDDIAIKEVNGGCI 68
                5678889**********999888767777777778888888888875555544444444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0037       3.7       3      28 ..       7      32 ..       5      49 .. 0.84
   2 ?    6.4   0.1    0.0057       5.7      93     150 ..     119     180 ..     113     241 .. 0.75
   3 ?   -1.1   0.0       1.1   1.1e+03      13      42 ..     202     230 ..     190     262 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0037
                EEEEEEEESTTSSHHHHHHHHHHHTT CS
    GTP_EFTU  3 irnigiighvDhGKtTLtdrLlyktg 28
                i +  + g + +GKtTL+ +L+++++
  EGE27783.1  7 IPTTLVTGFLGAGKTTLINALITHKS 32
                66778999999**********97654 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0057
                 T-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST....HHHHHHHHHHHHHHH CS
    GTP_EFTU  93 vlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl....kaelkeiveevkqkl 150
                 +l+ ++ v++a +  +++ +++   +  ++   iv+iN  D l    ++ l+  ++ ++++ 
  EGE27783.1 119 TLNAVICVLSAPQWQQEKYRTHDGYIAHVRHADIVAINRHDTLtdheRQALRAWIKSINEHA 180
                 5788999************************************7554444444444444433 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.1
                 TSSHHHHHHHHHHHTTSSCHHHHHHHHHST CS
    GTP_EFTU  13 DhGKtTLtdrLlyktgaiskkgekaeeerv 42 
                 ++ KtT   rL++++++i++++ k+ + + 
  EGE27783.1 202 NAQKTTWRIRLTASNSMITQATDKTAK-EL 230
                 566999999999999999997776643.23 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   3.1e-05     0.031      24      63 ..       7      46 ..       2     233 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.1e-05
      AAA_16 24 pelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                 + +l++G  G GK++l+++l ++ + +++ +l  ++ q 
  EGE27783.1  7 IPTTLVTGFLGAGKTTLINALITHKSHQRWALLLNEFGQI 46
                4789*****************9988888777777777666 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00061      0.61       1      23 [.      12      34 ..      12      41 .. 0.85
   2 ?    2.1   0.0      0.14   1.4e+02     159     236 ..     151     224 ..     139     229 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00061
  ATP_bind_1  1 vvGpaGsGKttfvgalseilelr 23
                v+G  G+GKtt+++al+ + + +
  EGE27783.1 12 VTGFLGAGKTTLINALITHKSHQ 34
                89**************9997765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.14
  ATP_bind_1 159 hvvvlnkfDllkek.lekeleffedvealslllekeeekykklaeaiaelleefalvlrflplssekeesiedllslid 236
                  +v++n+ D l ++ ++    +++ ++++  +++      + l+++iae+l ++ ++ + ++   + + s + ++++ d
  EGE27783.1 151 DIVAINRHDTLTDHeRQALRAWIKSINEHAVIID-----EAPLNQEIAEILLTTPHNAQKTTWRIRLTASNSMITQATD 224
                 699*******998866667789998888888888.....5589999999998888887766666666666665555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.15       3      24 ..      11      32 ..       9      42 .. 0.86
   2 ?   -0.8   0.1       1.6   1.6e+03      48      58 ..     147     156 ..     108     214 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1  3 aivGrpNvGKStLinaltgeka 24
                ++ G   +GK+tLinal+  k+
  EGE27783.1 11 LVTGFLGAGKTTLINALITHKS 32
                688999***********98654 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.6
                 EEEEECGGCSS CS
    MMR_HSR1  48 ielvDtpGlie 58 
                 ++ +D++  i+
  EGE27783.1 147 VRHADIVA-IN 156
                 33344444.22 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00041       0.4       8      29 ..      10      31 ..       8     111 .. 0.85
   2 ?    1.3   0.0      0.38   3.8e+02      79     100 ..     166     186 ..     131     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00041
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                ++vtG  G+GKTtl++ l   +
  EGE27783.1 10 TLVTGFLGAGKTTLINALITHK 31
                689*************998765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.38
      AAA_22  79 lealeqalraravielliiDEa 100
                 ++al+  +++    +++iiDEa
  EGE27783.1 166 RQALRAWIKSINE-HAVIIDEA 186
                 4566666666666.999****8 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00064      0.64       2      19 ..      11      30 ..      11      67 .. 0.74
   2 ?    1.6   0.1      0.39   3.9e+02      45      92 ..     154     196 ..     132     221 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00064
      AAA_18  2 lltGtpGvGKttlakeL..s 19
                l+tG  G+GKttl ++L   
  EGE27783.1 11 LVTGFLGAGKTTLINALitH 30
                69**************9442 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.39
      AAA_18  45 aldeskrldedkldklldaleenssaleegknlvidghlaeleseaak 92 
                 a+++++ l ++ +++l   ++ ++     ++ ++id  + + e ++  
  EGE27783.1 154 AINRHDTLTDHERQALRAWIKSIN-----EHAVIIDEAPLNQEIAEIL 196
                 445555555555555555555555.....5888999888887766544 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.17      22      43 ..      10      31 ..       3      37 .. 0.83
   2 ?   -1.2   0.1       1.9   1.9e+03      59      85 ..     137     166 ..     130     213 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                EEEEESTTSSHHHHHHHHHHHT CS
        TsaE 22 ilLeGdLGaGKTtlvrglakal 43
                 l +G LGaGKTtl+ +l+ + 
  EGE27783.1 10 TLVTGFLGAGKTTLINALITHK 31
                5779*************99875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.9
                 EEE..SS...EEEEE-TT-SSTHHHHHCTT CS
        TsaE  59 Yelekeg...lyHfDlYRledeeeleelgl 85 
                 Y++++     + H+D+  +++++ l++ + 
  EGE27783.1 137 YRTHDGYiahVRHADIVAINRHDTLTDHER 166
                 544333355578888887776666555443 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0008      0.79       6      31 ..       9      34 ..       7      61 .. 0.86
   2 ?    2.0   0.1       0.1     1e+02     147     177 ..     154     183 ..     147     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0008
                EEEEEEBTTSSCCCCCCTTSSSS--- CS
      Septin  6 tlmvvGesglGkttlintlfetdlie 31
                t +v G  g Gkttlin+l++++  +
  EGE27783.1  9 TTLVTGFLGAGKTTLINALITHKSHQ 34
                56899**************9987655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.1
                 EESSGGGS-HHHHHHHHHHHHHHHHHTT--- CS
      Septin 147 viaKaDtltkeElkefKkkireeleeeeiki 177
                  i + Dtlt++E ++++  i++ ++e+ + i
  EGE27783.1 154 AINRHDTLTDHERQALRAWIKS-INEHAVII 183
                 68899*********99998865.55555544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00037      0.37      20      39 ..       8      27 ..       6      34 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00037
      AAA_23 20 gltlItGpNGaGKTTildAi 39
                + tl+tG  GaGKTT+++A+
  EGE27783.1  8 PTTLVTGFLGAGKTTLINAL 27
                6799***************8 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.4    0.0003       0.3     135     186 ..     135     186 ..      14     214 .. 0.72
   2 ?   -1.0   0.0      0.55   5.5e+02     236     281 ..     203     252 ..     190     256 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0003
                 -----------------EEEE-HHHHHHHT......TTS-S-S-SEEEES-G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 135 mkkkntkvapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEg 186
                 +k + +    + ++ +d+v ++ +   +++e+q+ r  +k+++ + v++DE+
  EGE27783.1 135 EKYRTHDGYIAHVRHADIVAINRHDTLTDHERQALRAWIKSINEHAVIIDEA 186
                 2333333444567889999999999999***********************9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.55
                 --HHHHHHHTHHHHH...HHHHHHHHHHHTT-STTEE---GGGT.--S-- CS
                 xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
      SNF2_N 236 gekqtfdkllqrpie...aqaekgrsrLlqllqrlmlrrakkdv.eknlP 281
                  +k+t++ +l+       + ++k +++L++l  r+  rra  +v    lP
  EGE27783.1 203 AQKTTWRIRLTASNSmitQATDKTAKELNDLPYRYHERRAAHQVgRWRLP 252
                 34778888887766666688888999999999999999999988555676 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0019       1.9      34      52 ..      12      30 ..       8      38 .. 0.90
   2 ?    1.2   0.1      0.15   1.5e+02     169     205 ..     150     210 ..     144     247 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0019
                EEE-TTSSHHHHHHHHHHH CS
        MeaB 34 ltGvPGaGkstlvealgle 52
                +tG+ GaGk tl++al+++
  EGE27783.1 12 VTGFLGAGKTTLINALITH 30
                8***************986 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.15
                 -SEEEEE---.HHHHHHHHHHHHHHHHHCST.........................TBTTB-- CS
        MeaB 169 aDiivvnkaD.kkeaekaarelraaleleee.........................kekeWrp 205
                 aDi+++n+ D +++ e+  + lra ++  +e                         ++++Wr 
  EGE27783.1 150 ADIVAINRHDtLTDHER--QALRAWIKSINEhaviideaplnqeiaeillttphnaQKTTWRI 210
                 899*****996333332..22222222222213344445555555555555555444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 2513.93
//
Query:       EGE27784.1  [L=244]
Description: osmolarity response regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-32  111.7   0.1      6e-32  110.1   0.2    1.8  3  Response_reg  Response regulator receiver domain
    2.7e-22   78.6   0.1    7.2e-22   77.3   0.0    1.7  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.026   14.8   0.1      0.045   14.0   0.1    1.4  1  TrkA_N        TrkA-N domain
      0.071   12.3   0.4      0.098   11.9   0.4    1.2  1  DUF43         Branched-chain polyamine synthase A C-terminal 
       0.08   13.3   0.0       0.27   11.6   0.0    1.9  2  FleQ          Flagellar regulatory protein FleQ


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.2   1.7e-35     6e-32       1     112 []      12     122 ..      12     122 .. 0.99
   2 ?   -3.0   0.0       2.3   8.3e+03      15      36 ..     154     174 ..     142     193 .. 0.60
   3 ?   -2.9   0.0       2.2   7.7e+03       3      16 ..     216     229 ..     216     231 .. 0.84

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 1.7e-35
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+vdDd  +r+ll+++le++gy +v++a dgk++ +l+ +e + li+lD+++p+ dG+ ++k++r+e++++p+i+lta+++++d++++l+agadd+
    EGE27784.1  12 ILVVDDDARLRTLLQRFLEDDGY-VVRVAHDGKQMDKLIAREMFSLIVLDLMLPDEDGIAICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDY 107
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   l Kpf+p+eLl++++
    EGE27784.1 108 LPKPFNPKELLARIK 122
                   ***********9985 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.3
                   HHHHHHTTEEEEEEESSHHHHH CS
  Response_reg  15 rqlleeegyeevaeaedgkeal 36 
                   ++ l+++g  +v+ ++   ++l
    EGE27784.1 154 TRTLKRDGN-VVTLTTGEFSVL 174
                   555555555.555444444444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.2
                   EESSSHHHHHHHHH CS
  Response_reg   3 ivdDdplvrellrq 16 
                   +++D+p +++ +++
    EGE27784.1 216 LIEDNPSQARYIQT 229
                   589***99999886 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.6   5.9e+03      12      25 ..      23      36 ..      19      39 .. 0.65
   2 !   77.3   0.0     2e-25   7.2e-22       2      77 .]     162     237 ..     161     237 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
                 HHHHHHHHTTTSEE CS
  Trans_reg_C 12 klLelLlenpgrvv 25
                  lL+ +le+ g vv
   EGE27784.1 23 TLLQRFLEDDGYVV 36
                 56777777776666 PP

  == domain 2  score: 77.3 bits;  conditional E-value: 2e-25
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  + v+lt+ ef++L++L+++p+++++r++L++   g+++   +r++dv++srLR+ +ed++++ r+I+tv+gvGY++
   EGE27784.1 162 NVVTLTTGEFSVLKALVQHPREPLTRDKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 237
                  6799**********************************************************************87 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.3e-05     0.045      17     111 ..       5     105 ..       1     108 [. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
                 HHH.TTEEEEEEESSHHHHHHHHHTTSE...EEES-TTSHHHHHHTTGGGESEEEE-..SSSHHHHHHHHHHHHHHTSSSEEEEEESSGGGHHHHHH.. CS
      TrkA_N  17 Lse.ggkdvvvidkdeerveelreegle...vvvgdatdeevLeeagiekadaviaa..tgddeanilavllakelnpkkkiiaraqdpehaellkk.. 107
                 L +  + +++v+d+d +r+++l +++le   +vv  a+d + ++++ + ++ ++i++  +  de+ i++++ ++  n+ ++ii  + + ++a+ +    
  EGE27784.1   5 LDTmTH-RILVVDDD-ARLRTLLQRFLEddgYVVRVAHDGKQMDKLIAREMFSLIVLdlMLPDEDGIAICKRLRAENSSIPIIMLTAKGSDADRIAGle 101
                 555345.69999998.699999999988889999************99999999888667799****************99997666666555543322 PP

                 HTTS CS
      TrkA_N 108 lgad 111
                 +gad
  EGE27784.1 102 AGAD 105
                 5665 PP

>> DUF43  Branched-chain polyamine synthase A C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   2.7e-05     0.098      62     100 ..       4      41 ..       1      62 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
                 HHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE--- CS
       DUF43  62 aLtglpkkvvvvDiDeRlikfiervakelglkieaivyD 100
                  L  ++++++vvD D Rl  +++r+ ++ g+ +++  +D
  EGE27784.1   4 ILDTMTHRILVVDDDARLRTLLQRFLEDDGYVVRV-AHD 41 
                 57899*************************98876.455 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.5e-05      0.27       1      83 [.      11      96 ..      11     123 .. 0.73
   2 ?   -1.8   0.0       1.1     4e+03      28      58 ..     142     176 ..     138     192 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-05
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseelsaaleesssealavilgsvs..sleealealaekdphlPvlllgesdea.ee 83
                +iLv+ddda+ r+ l+  Le  g  v++  + +  ++l  ++  +l+v+          + +++l  ++ ++P+++l+ ++++ ++
  EGE27784.1 11 RILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLMLPdeDGIAICKRLRAENSSIPIIMLTAKGSDaDR 96
                69*******99999997666555556666666654555444444455444444446788999***************999988443 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
        FleQ  28 avsseel....saaleesssealavilgsvsslee 58 
                 +v++  +    s+ + +++ +++++ +g+ s l++
  EGE27784.1 142 VVEFGPWtldlSTRTLKRDGNVVTLTTGEFSVLKA 176
                 55555555555666777777777777777763222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1994.47
//
Query:       EGE27785.1  [L=788]
Description: RNA binding protein S1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-53  178.4   0.4    1.7e-52  177.2   0.4    1.7  1  Tex_YqgF  Tex protein YqgF-like domain
    1.1e-46  158.8   0.2    2.9e-46  157.4   0.2    1.7  1  Tex_N     Tex-like protein N-terminal domain
    3.2e-26   91.4   0.1    9.8e-26   89.8   0.1    1.9  1  HHH_3     Helix-hairpin-helix motif
    4.1e-17   62.3   2.0    7.9e-17   61.4   2.0    1.5  1  S1        S1 RNA binding domain
    1.1e-13   51.8   0.1    8.9e-13   48.9   0.0    2.8  2  HHH_9     HHH domain
    9.4e-08   32.0   0.0    3.3e-07   30.2   0.0    2.0  1  YqgF      Holliday-junction resolvase-like of SPT6
    4.4e-06   27.0   0.0    1.2e-05   25.6   0.0    1.7  1  HHH_7     Helix-hairpin-helix motif
    0.00095   19.4   0.1      0.064   13.5   0.0    2.9  2  HHH_6     Helix-hairpin-helix motif
     0.0083   15.6   0.0      0.018   14.5   0.0    1.5  1  T2SSK     Type II secretion system (T2SS), protein K


Domain annotation for each model (and alignments):
>> Tex_YqgF  Tex protein YqgF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.4   8.4e-56   1.7e-52       1     126 []     339     464 ..     339     464 .. 0.99

  Alignments for each domain:
  == domain 1  score: 177.2 bits;  conditional E-value: 8.4e-56
                 .-EEEEE--STT-EEEEEE-TTS-EEEEEEE--STTT--HHHHHHHHHHHHHHTT--EEEEESSTTHHHHHHHHHHHHHHGGG--EEEEE--TTHHHHH CS
    Tex_YqgF   1 kvvlglDPgyrtGcKlavvdetgkvletaviyphepkkkveeakkklkklvkkykveliaiGnGtasreteklvaelikeeelkvkyvivsEaGaSvYS 99 
                 k++lg+DPgy +G+K+av+d  g+vl+t+++yp +p++k++eak+++++l+k+++vel+aiGnGtasre+e+lv+++i+e++l++++++vsEaGaSvYS
  EGE27785.1 339 KAILGVDPGYSHGVKMAVIDGMGEVLATDTVYPFKPHHKLAEAKDRIETLIKTHQVELVAIGNGTASRESEELVKSIIREASLSTQALVVSEAGASVYS 437
                 689************************************************************************************************ PP

                 HSHHHHHH-TTS-HHHHHHHHHHHHHH CS
    Tex_YqgF 100 aselaaeEfpdldvslrgavsiarrlq 126
                 ase+a++E+pdldvs+rgavsiarrlq
  EGE27785.1 438 ASEIASQELPDLDVSVRGAVSIARRLQ 464
                 **************************9 PP

>> Tex_N  Tex-like protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.2   1.4e-49   2.9e-46       2     181 ..      22     213 ..      21     214 .. 0.95

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 1.4e-49
       Tex_N   2 aeelslkekqveavveLldegatvPFIARYRkeatggldeeqlreieerleylrelekrkeevlksieeqgklteeLkkkieaaktleeledlylpYkp 100
                 a++  +k++qve   +L+dega+vPFIARYRke tggld+e lre+e++l   r+l++r++++l  +++q+ +t+eL++++++a+t+ ele++y+pY+p
  EGE27785.1  22 AATHAIKSTQVEVFARLYDEGASVPFIARYRKEHTGGLDDEILRELEKSLIIERDLAARRQKILGLLAAQNVMTDELAERVNTASTKLELEEIYQPYRP 120
                 667789********************************************************************************************* PP

       Tex_N 101 krkTkatiArekGLeplAelileqkslaeeeaakyvn.............kevksaeealegardIiaeeisedaelrkklrellkkegvivsk 181
                 +r++ a +A+ +GLep+A+++l+ +s+ +e+++ yv+             +++ + ++++ g+++Ii +e+++  +l +k+r+ +++++ i+s+
  EGE27785.1 121 RRRSVAARAKLAGLEPIAHAVLAGQSP-AEALEGYVSpetltddkgetfeADFGDFDKQIVGIQAIILDEWATALDLLDKVRTGFNATASIRSE 213
                 ***********************8876.999*****9999999988888888889999999*************************99999876 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.1   4.9e-29   9.8e-26       1      65 []     504     568 ..     504     568 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 4.9e-29
       HHH_3   1 vnavgvdiNtAsaeeLqklpGlgpklAknIvayReknGpfksreeLlkvkglgpktfeqlagflr 65 
                 vnavgvd+NtAs + L++++Gl++++A++Iv+yR ++G+f++re L++v++lg ktfeq+agflr
  EGE27785.1 504 VNAVGVDVNTASPAILAHISGLNKNVAQQIVEYRRAHGAFTNREALKNVPRLGVKTFEQAAGFLR 568
                 79*************************************************************97 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   2.0     4e-20   7.9e-17       2      75 .]     656     728 ..     655     728 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 4e-20
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +++g  +eG+Vt+vt +G fV++g +++g+v++sels+   v +p +v+k+ d v v+v+ vd+ r+ri +s+k
  EGE27785.1 656 LKVGMTLEGVVTNVTAFGCFVDVGVHQDGLVHISELSDG-FVTNPADVVKPQDIVTVRVISVDEVRGRIGFSMK 728
                 5799*********************************99.*******************************987 PP

>> HHH_9  HHH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.6   1.1e+04      12      47 ..     408     443 ..     407     466 .. 0.64
   2 !   48.9   0.0   4.5e-16   8.9e-13       1      70 []     574     638 ..     574     638 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.6
       HHH_9  12 sYalakkllkklgldlkeligeeallkkldkkklae 47 
                 s +l+k ++ ++ l++++l+ +ea  +  +++++a+
  EGE27785.1 408 SEELVKSIIREASLSTQALVVSEAGASVYSASEIAS 443
                 556788888888888888777666554444444443 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 4.5e-16
       HHH_9   1 npLDnTavHPEsYalakkllkklgldlkeligeeallkkldkkklaeeevgeptleDIleeLakPgrDpR 70 
                 +pLD+T+vHPEsY l+ ++l++ g++l e+ g+e+l k+l+ ++      +   l  +l+eLakP +DpR
  EGE27785.1 574 EPLDATGVHPESYGLVYEILTQHGKSLDEVLGNESLTKALNDSS-----DNFSQLATVLNELAKPAHDPR 638
                 7**********************************999988432.....334568889***********9 PP

>> YqgF  Holliday-junction resolvase-like of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.6e-10   3.3e-07      18     148 ..     349     472 ..     337     474 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.6e-10
                 TS-EEEEEE-TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHHHHH--SEEEE--SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE---TTHHHHHTSH CS
        YqgF  18 ddaiicvlvngeGevvdslklaareedrekkakfvetlkkfllskkPdvigvsGenrdaqkliedvkevlhekeqdsrlstvgvilvddevailYqnsk 116
                 ++ +  + ++g Gev+    +    + ++k a+  + ++ +++  + + +++ G+ + ++   e vk ++ e      ls  +  +v +  a  Y  s+
  EGE27785.1 349 SHGVKMAVIDGMGEVLATDTV-YPFKPHHKLAEAKDRIETLIKTHQVELVAI-GNGTASRESEELVKSIIREAS----LS-TQALVVSEAGASVYSASE 440
                 457788899999999988777.666677778888889999***********9.666677777888899998887....43.4556788999******** PP

                 HHHHHSTT--HHHHHHHHHHHHHH-HHHHHHC CS
        YqgF 117 kaeaefrdkPpllkyavalaRkiqdPLleyaq 148
                  a +e +d+   ++ av++aR++qdPL e  +
  EGE27785.1 441 IASQELPDLDVSVRGAVSIARRLQDPLSELVK 472
                 ***************************99766 PP

>> HHH_7  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   5.8e-09   1.2e-05      10     103 ..     482     569 ..     475     570 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.8e-09
                 TTGGGS-HHHHHHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGSTT--HHHHHHHHHHHHHC-S----TTHHHHTTSS-HHHHHHHCCCEE- CS
       HHH_7  10 PlqellskeellkaletalvdivnlvgvdvnkavankyeaallkyiaGlGprkatdllkklkrlnerlearsqlitkqilskkvflncagflki 103
                  +q+ + + el   l+    d vn vgvdvn a     + a+l +i+Gl +  a+++++  +r  + + +r+ l     l+ k f  +agfl i
  EGE27785.1 482 QYQHDVNQTELESSLDKVTEDCVNAVGVDVNTA-----SPAILAHISGLNKNVAQQIVEY-RRAHGAFTNREALKNVPRLGVKTFEQAAGFLRI 569
                 69*****************************99.....579**************99875.777889*************************98 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.095   1.9e+02      23      65 ..     198     238 ..     185     249 .. 0.80
   2 !   13.5   0.0   3.2e-05     0.064      29      61 ..     519     551 ..     480     565 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.095
       HHH_6  23 gairlGLaaikglgeaaaerivaeRekegpfksledlarrvds 65 
                 +++r G++a   ++++ + +  ++Re++++fk+ ++ ++  ++
  EGE27785.1 198 DKVRTGFNATASIRSELIGE--EKREAGEKFKDYFEHTEPFAK 238
                 5799***********99998..99********99887776555 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.2e-05
       HHH_6  29 LaaikglgeaaaerivaeRekegpfksledlar 61 
                 La+i gl++++a++iv+ R+++g+f++ e l +
  EGE27785.1 519 LAHISGLNKNVAQQIVEYRRAHGAFTNREALKN 551
                 899***********************9887755 PP

>> T2SSK  Type II secretion system (T2SS), protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     9e-06     0.018     183     233 ..     507     557 ..     503     570 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9e-06
       T2SSK 183 tkiNiNtasaevLaAlveglslsqaqrllaaRpea.gfrsvadflaasalsg 233
                 + +++Ntas+ +La  ++gl+   aq++++ R++   f + +++++ + l+ 
  EGE27785.1 507 VGVDVNTASPAILAH-ISGLNKNVAQQIVEYRRAHgAFTNREALKNVPRLGV 557
                 5799********965.566************988868999999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       955  (0.0532657); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 5594.74
//
Query:       EGE27786.1  [L=232]
Description: hypothetical protein EA1_00305 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-38  132.7  35.9    1.2e-20   74.2   8.2    2.1  2  DUF305       Domain of unknown function (DUF305)
    6.5e-06   26.4   4.7    6.5e-06   26.4   4.7    2.4  2  DUF4142      Domain of unknown function (DUF4142)
     0.0016   18.4   3.1       0.11   12.5   0.4    2.6  2  Ferritin     Ferritin-like domain
  ------ inclusion threshold ------
      0.028   13.7   5.5      0.036   13.3   5.5    1.0  1  DUF3881      Domain of unknown function, E. rectale Gene desc
      0.077   12.9   1.0         16    5.5   0.1    3.0  2  DUF2633      Protein of unknown function (DUF2633)
       0.08   12.8   2.4       0.87    9.4   0.1    2.4  2  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
       0.12   12.9   0.5       0.37   11.4   0.5    1.9  1  LPAM_1       Prokaryotic membrane lipoprotein lipid attachmen


Domain annotation for each model (and alignments):
>> DUF305  Domain of unknown function (DUF305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5  19.7   3.2e-23   8.3e-20      44     152 .]      27     134 ..      14     134 .. 0.78
   2 !   74.2   8.2   4.7e-24   1.2e-20      45     152 .]     126     225 ..     126     225 .. 0.86

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 3.2e-23
                 HHHHHHHHHHHHHT---........-----HHHHHHTT---HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHGGGG-----HHHHHHHHHHHHHHH CS
      DUF305  44 aeiaemqgwleawgqpassagegeaaeaseaeeaampgmaseaelaalraasgadfdrlFlelMirhHqgavemaeaalekgedpevrelaeaiieaQq 142
                 ++ a++++  ++  q a+ a++ +++  ++a++++ ++ +++++ a+++aa++a +d++F+e+Mi+hHqga++ma+ +l+ g+d+++r+la++ii++Qq
  EGE27786.1  27 EQTAALSTQNAQETQHAAHAHHDTSMP-MAAHTSEYMQSMNTMHDAMMAAATKAHADVAFVEGMIPHHQGAIQMAQIELKYGKDAAMRKLAQDIIDTQQ 124
                 555566666666666666666333333.3444444444455555567888999********************************************** PP

                 HHHHHHHHHH CS
      DUF305 143 aEieqmqell 152
                 +Eie mq++l
  EGE27786.1 125 TEIEFMQNWL 134
                 ********97 PP

  == domain 2  score: 74.2 bits;  conditional E-value: 4.7e-24
                 HHHHHHHHHHHHT---........-----HHHHHHTT---HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHGGGG-----HHHHHHHHHHHHHHHH CS
      DUF305  45 eiaemqgwleawgqpassagegeaaeaseaeeaampgmaseaelaalraasgadfdrlFlelMirhHqgavemaeaalekgedpevrelaeaiieaQqa 143
                 ei+ mq+wl++ +++++ ++     + ++a+    ++   +a+++ +   + +d+d +F+++Mi+hHqga++ma+ +l+ g+d+++r+la++ii+aQ+ 
  EGE27786.1 126 EIEFMQNWLTTAQDKDAIDA-----NSEHAKAYLSDMSIHDAMMTGV---HHEDADIAFAQGMIPHHQGAIQMAQIELKYGKDAAMRKLAQDIIDAQNP 216
                 89**********99998887.....4444444444555667777765...679********************************************** PP

                 HHHHHHHHH CS
      DUF305 144 Eieqmqell 152
                 Ei+ m+++l
  EGE27786.1 217 EIALMKQWL 225
                 ********7 PP

>> DUF4142  Domain of unknown function (DUF4142)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   9.0   1.3e-05     0.032      46     132 ..      35     126 ..      12     132 .. 0.72
   2 !   26.4   4.7   2.5e-09   6.5e-06       3     125 ..      82     210 ..      81     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
     DUF4142  46 kaneeLkalas.kkgvtlpd....steldaeaqakldkLkalsgaaFDkaYleaqvaahqkavellekaaasgkdaelkafaektlptlqaH 132
                 ++++e + +a+  ++ ++p     s+ +++ +  + + ++a++ a  D a++e ++  hq a+++ + + + gkda+++++a++   t q+ 
  EGE27786.1  35 QNAQETQHAAHaHHDTSMPMaahtSEYMQSMNTMHDAMMAAATKAHADVAFVEGMIPHHQGAIQMAQIELKYGKDAAMRKLAQDIIDTQQTE 126
                 44444444444322222222224344444444444466777788889************************************998877665 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 2.5e-09
     DUF4142   3 daeflakaaaaglfeveaaklAlqkaknpevkaFAqqmvadhtkaneeLkalas....kkgvtlpd..steldaeaqakl...dkLkalsgaaFDkaYl 92 
                 d +f++ +   ++  +++a++ l+ +k++++++ Aq +++ +++  e ++ + +    k+++++++   ++  ++        + ++  + ++ D a++
  EGE27786.1  82 DVAFVEGMIPHHQGAIQMAQIELKYGKDAAMRKLAQDIIDTQQTEIEFMQNWLTtaqdKDAIDANSehAKAYLSDM---SihdAMMTGVHHEDADIAFA 177
                 6789999999999**************************9999877776666654434777777764333333333...2454889999********** PP

     DUF4142  93 eaqvaahqkavellekaaasgkdaelkafaekt 125
                 + ++  hq a+++ + + + gkda+++++a++ 
  EGE27786.1 178 QGMIPHHQGAIQMAQIELKYGKDAAMRKLAQDI 210
                 ******************************986 PP

>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.4   4.2e-05      0.11     110     139 ..     108     137 ..      94     139 .. 0.91
   2 !    5.6   0.0    0.0055        14     110     137 ..     199     226 ..     184     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
                 T-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin 110 gDpatadfledfleeqeeheweleallekl 139
                 +D a++ +++d++++q+ ++++++++l++ 
  EGE27786.1 108 KDAAMRKLAQDIIDTQQTEIEFMQNWLTTA 137
                 79*************************975 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0055
                 T-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin 110 gDpatadfledfleeqeehewelealle 137
                 +D a++ +++d+++ q  +++ ++++l+
  EGE27786.1 199 KDAAMRKLAQDIIDAQNPEIALMKQWLG 226
                 79**********************9996 PP

>> DUF3881  Domain of unknown function, E. rectale Gene description (DUF3881)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   5.5   1.4e-05     0.036      15     192 ..      29     213 ..      20     218 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.4e-05
     DUF3881  15 lekllkevieeaeekkvvkkeeeeklaelskefaedi......giavvgeldekdefeveyyfPylkgseittkeevsverhadkesya.gicddlkvg 106
                 + +l ++  +e+++ + ++++++  +a  + e+ +++      ++a   +  + d   ve ++P+ +g   + + e++  + a+ ++ a  i+d ++++
  EGE27786.1  29 TAALSTQNAQETQHAAHAHHDTSMPMAAHTSEYMQSMntmhdaMMAAATK-AHADVAFVEGMIPHHQGAIQMAQIELKYGKDAAMRKLAqDIIDTQQTE 126
                 55566666666666666666666666666666666554444414444444.44677778999*****99988888888777776666541466766666 PP

     DUF3881 107 vsliFylqnvieylkekkkeklpekaksvtlsgLsleGkillpvkkdekqeekekeeskkrkkllaaA....keGdeeAiesLtledidt 192
                 ++   ++qn +   + k + ++++++ +++ls +s++  ++ +v++++ +++ ++    +++  ++ A    k G ++A+ +L+ + id 
  EGE27786.1 127 IE---FMQNWLTTAQDKDAIDANSEHAKAYLSDMSIHDAMMTGVHHEDADIAFAQGMIPHHQGAIQMAqielKYGKDAAMRKLAQDIIDA 213
                 55...79**********9999999****************************9999999999999988555578*********9988886 PP

>> DUF2633  Protein of unknown function (DUF2633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.011        27      31      48 ..      88     105 ..      86     113 .. 0.85
   2 ?    5.5   0.1    0.0061        16      31      48 ..     179     196 ..     174     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.011
     DUF2633  31 gawsHHqdkkqaqqiels 48 
                 g + HHq   q  qiel 
  EGE27786.1  88 GMIPHHQGAIQMAQIELK 105
                 5688************96 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0061
     DUF2633  31 gawsHHqdkkqaqqiels 48 
                 g + HHq   q  qiel 
  EGE27786.1 179 GMIPHHQGAIQMAQIELK 196
                 7899************96 PP

>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00034      0.87      30      58 ..      65      93 ..      33     106 .. 0.63
   2 ?    2.8   0.2     0.038        97       7      59 ..     111     185 ..     106     219 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00034
                 T-S--HHH.....HHHTHTTTSEEEEEESBE... CS
  Oxidored_q6 30 lladskee.....eieakekeadvlvveGavtrk 58
                 +      +      ++a++++adv++veG ++++
   EGE27786.1 65 MN-----TmhdamMAAATKAHADVAFVEGMIPHH 93
                 11.....1233345556678***********554 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.038
                  HHT-TTTTHHHHHHTEEEEEETTT-S--HHH.......................HHHTHTTTSEEEEEESBE...E CS
  Oxidored_q6   7 sllaleedlldllelielryhetlladskee.......................eieakekeadvlvveGavtrkp 59 
                  ++++l +d++d  +  e+++++++l++++++                        +  ++++ad+++ +G +++++
   EGE27786.1 111 AMRKLAQDIIDT-QQTEIEFMQNWLTTAQDKdaidansehakaylsdmsihdamMTGVHHEDADIAFAQGMIPHHQ 185
                  566666666666.555555555555555444445555555555555555555442223344777777777775544 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   0.00014      0.37       3      18 .]       5      20 ..       4      20 .. 0.96

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
      LPAM_1  3 KillalgalllLsGCs 18
                K+lla+ ++ +Ls+Cs
  EGE27786.1  5 KPLLAIAFATALSACS 20
                99*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1328  (0.0740699); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1747.37
//
Query:       EGE27787.1  [L=429]
Description: type II citrate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.8e-133  443.0   0.0   9.1e-133  442.8   0.0    1.0  1  Citrate_synt  Citrate synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  442.8   0.0  5.1e-137  9.1e-133       1     361 []      48     411 ..      48     411 .. 0.95

  Alignments for each domain:
  == domain 1  score: 442.8 bits;  conditional E-value: 5.1e-137
                   GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS-HHHHHHHHHHH CS
  Citrate_synt   1 glrgvaaleteisevdgekgelrYRGydieeLaeekssfeevaylLltgelPtkeelkefkeelaearklpekvlealealpkdahpmavlraavsa 97 
                   g++ +a +e++i+++dgekgel++RGy i++La +k+++ ev+y Ll+g+lP++e+ ++f +++++++ +++++++ +e +++dahpma++  +v a
    EGE27787.1  48 GFMATAPVESAITFIDGEKGELLHRGYAIDDLA-SKAEYLEVCYALLYGDLPNAEQKQAFYQRISDHMSVHDQLRKFFEGFRRDAHPMAIMVGVVGA 143
                   67789999*************************.8************************************************************** PP

                   HHHHSTT...CTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.--.---TTSSHHHHHHHHHHS......S---HHHHHHHHHHHHHHS--SS CS
  Citrate_synt  98 lsaddee...seakeeseeaalrdalkliAklptiaaaiyrarlgrepl.epddklsyaenflymlrg......kkpdeeeaklldlalvlhaDHel 184
                   lsa++++   ++++e++++    +a++liAk+pt+aa+ y+++ g+ p+ +p+++ syaenflym+++      +k ++ ++k++d++++lhaDHe+
    EGE27787.1 144 LSAFYHNhldISDAEHRDN----TAVDLIAKVPTLAAMSYKYSIGE-PFmYPRKDFSYAENFLYMMFAtpgepdYKVNPVLVKAMDKIFTLHADHEQ 235
                   *****97654444444444....4556*****************97.777***99***********978899**9********************** PP

                   SHHHHHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTTS--TTBC-SSSSS--HHHHHHHHHHHHHHTC CS
  Citrate_synt 185 naSTfaarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakekerlpGfGHrvykksDpRakilkelaeelaee 281
                   naST ++r+++St+a++y++iaagi+al+Gp hgganeavl+ml+eigs e  vee++ekv++ke  +l+GfGHrvy+++DpRak++ke ++e+   
    EGE27787.1 236 NASTSTVRLAGSTGANPYACIAAGIVALWGPSHGGANEAVLEMLDEIGSVE-HVEEFMEKVKRKE-VKLMGFGHRVYRNFDPRAKVMKETCDEVLGA 330
                   **************************************************9.***********96.****************************999 PP

                   .HTHHHHHHHHHHHHHHHHHHHHCHHGCT-EB-THHHHHHHHHHTT--GGGHHHHHHHHHHHHHHHHHHHHH.HT------E CS
  Citrate_synt 282 .kgkdpllklaeeleevapevlkekeeknlypNvDfysgvlyralgipeelftvlfaisRvaGwlAhileql.adnkiiRPr 361
                    + +dp l+la++le++a e+++++e ++lypNvDfysg++++a+gip+++ftv+fa++R+aGw+Ah+ e   ++ ki RPr
    EGE27787.1 331 lGINDPKLELAMKLEKIALEDPYFVE-RKLYPNVDFYSGIILKAIGIPTSMFTVIFALARTAGWIAHWTEMHsESFKIGRPR 411
                   99************************.*******************************************777889*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3360.86
//
Query:       EGE27788.1  [L=129]
Description: succinate dehydrogenase, cytochrome b556 subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-21   74.5   4.3      8e-21   74.3   4.3    1.1  1  Sdh_cyt         Succinate dehydrogenase/Fumarate reductase tr
  ------ inclusion threshold ------
      0.093   12.1   4.0       0.14   11.5   4.0    1.3  1  TssN            Type VI secretion system, TssN
       0.12   12.5   7.1       0.17   12.0   7.1    1.3  1  Fumarate_red_D  Fumarate reductase subunit D


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   4.3   1.3e-24     8e-21       3     119 ..       6     121 ..       4     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 1.3e-24
     Sdh_cyt   3 knrplsphlqlyr....lplgawlsilhritGvallvglllllvwlllalslsspesfarvvallaspiklilllllllallyHllnGiRhllwDlglg 97 
                 +nrp++  l+++     +   a++silhr++G++l++ l++++++ +l +slss++sfa+v + +a   +++  +++++a++yH++ Gi+hll D g+ 
  EGE27788.1   6 SNRPINLPLSQVIavnsKSPIAMASILHRVSGIVLFL-LVPVMLC-ILQTSLSSADSFAAVFNNIA--LRFVA-WIFVAATAYHFVMGIKHLLADAGMN 99 
                 5777666554433222255889***************.8888877.778899**********9996..78888.**********************998 PP

     Sdh_cyt  98 lelesarksalavlalavalvl 119
                  el+s+r+ a++ +++a++l++
  EGE27788.1 100 EELKSGRTAAVISFVIAAVLIV 121
                 8889998888888888777766 PP

>> TssN  Type VI secretion system, TssN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.0   2.3e-05      0.14      47     112 ..      62     125 ..      26     129 .] 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.3e-05
        TssN  47 pgllgflknefvpygyillqilylllGilhlylllkkffkelkekkilfeilltlivillglvlfv 112
                  ++++ +   fv + +++++ + +++Gi hl  +   +++elk+ + +  ++ ++i+++l ++ fv
  EGE27788.1  62 AAVFNNIALRFVAWIFVAATAYHFVMGIKHLL-ADAGMNEELKSGR-TAAVISFVIAAVLIVASFV 125
                 3444448889*********************9.999******9999.3333333333333333333 PP

>> Fumarate_red_D  Fumarate reductase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   7.1   2.9e-05      0.17      30     112 ..      38     126 ..      23     128 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.9e-05
  Fumarate_red_D  30 lilglllplGl..ldsdalsyekvlafaqswigklvllvviilplwhalhrihhglhdlkihvk....kaaklifYglAallsvvalil 112
                     ++l ll+p+ l  l+++  s ++  a+++++  ++v ++ ++  ++h +  i h l d +++ +    ++a +i + +Aa+l v++++ 
      EGE27788.1  38 IVLFLLVPVMLciLQTSLSSADSFAAVFNNIALRFVAWIFVAATAYHFVMGIKHLLADAGMNEElksgRTAAVISFVIAAVLIVASFVW 126
                     455566775543377788899999**********************************9876541111555666677777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1163  (0.064867); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1007.86
//
Query:       EGE27789.1  [L=117]
Description: succinate dehydrogenase cytochrome b556 small membrane subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-09   36.0   9.1    6.8e-09   35.8   9.1    1.1  1  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem
     0.0081   15.8   2.7      0.022   14.4   2.7    1.7  1  CybS      CybS, succinate dehydrogenase cytochrome B small su


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   9.1   7.6e-13   6.8e-09      18     117 ..      16     107 ..       1     115 [. 0.70

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 7.6e-13
     Sdh_cyt  18 lgawlsilhritGvallvglllllvwlllalslsspesfarvvallaspiklilllllllallyHllnGiRhllwD.lglglelesarksalavlalav 115
                  g+  +il+ri++v+l+v +++++ ++l+++  + +es++ ++ +l  p+kl+  l+++l+l++H++ G+  +l D + +    +  r   ++++++av
  EGE27789.1  16 SGSRDWILQRISAVVLAVYSVVMVGFFLFND--VNFESWQGFMLSL--PMKLFS-LVAILSLVFHAWVGMWTVLTDyV-K---SSGLRLVIQSLVIIAV 105
                 67778*************5555555667777..6999999999777..799999.899999999************43.2...2222333333333333 PP

     Sdh_cyt 116 al 117
                 ++
  EGE27789.1 106 LV 107
                 32 PP

>> CybS  CybS, succinate dehydrogenase cytochrome B small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   2.7   2.5e-06     0.022      31     103 ..      16     105 ..       3     116 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.5e-06
        CybS  31 egsyhwtleRivavgl..vpltvvplvags.l.............spvlDavlavlllihshlgfesciiDYipkrvyg.klhklahylL 103
                 +gs  w l+Ri av l    +++v+++ +  +              ++   v  ++l++h+++g+  + +DY++++ ++ +++ l+++++
  EGE27789.1  16 SGSRDWILQRISAVVLavYSVVMVGFFLFNdVnfeswqgfmlslpMKLFSLVAILSLVFHAWVGMWTVLTDYVKSSGLRlVIQSLVIIAV 105
                 678888899988775421578888888844225667777777766666666667789******************999966666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1006  (0.0561102); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 885.26
//
Query:       EGE27790.1  [L=616]
Description: succinate dehydrogenase flavoprotein subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-113  380.4   1.9   1.8e-113  379.8   1.9    1.3  1  FAD_binding_2   FAD binding domain
    2.4e-32  111.6   0.1    3.7e-32  111.0   0.1    1.3  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    5.4e-05   22.9   1.2     0.0023   17.6   0.4    2.5  2  DAO             FAD dependent oxidoreductase
    0.00023   20.5   3.1     0.0097   15.2   1.8    3.0  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0087   15.3   0.4       0.13   11.5   0.2    2.4  2  Thi4            Thi4 family
  ------ inclusion threshold ------
      0.016   14.3   2.4        0.3   10.1   2.2    2.2  2  GIDA            Glucose inhibited division protein A
       0.04   13.2   0.1       0.08   12.2   0.1    1.4  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.076   12.2   2.1        0.1   11.8   0.9    1.8  3  FAD_binding_3   FAD binding domain
       0.13   11.0   5.0       0.22   10.2   1.5    2.5  3  HI0933_like     HI0933-like protein


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.8   1.9  9.2e-117  1.8e-113       1     417 []      18     422 ..      18     422 .. 0.98

  Alignments for each domain:
  == domain 1  score: 379.8 bits;  conditional E-value: 9.2e-117
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    D++++G+G++G++A+l++ + G kvav++k+++++++t+++qGgi a+l +++      d++  h++dt+k++d+l+dq+++e+++++ap+ v eL
     EGE27790.1  18 DAVIVGGGGSGMRASLQLVNGGMKVAVITKVFPTRSHTVAAQGGIGASL-GNM---S-PDNWHFHFYDTVKGSDWLGDQDAIEYMCREAPKVVYEL 108
                    89***********************************************.666...3.5************************************* PP

                    HHTT----BCCTSSB-EEE-TT-SST......EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTT.EEEEEEEEETTTT CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsat......artlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedg.rvtGavvenpesg 185
                    e++g+pf+r++dg++++r++Gg+s +       r ++ aad+      tghall++l+++ ++ g++f+ ++ a++Li +d+  ++G+++ ++e+g
     EGE27790.1 109 EHMGMPFDRNADGTIYQRPFGGHSSNygekpvPRACA-AADR------TGHALLHTLYQKNLEKGTQFFVEWIALDLIKDDEgNINGVIALDQETG 197
                    *******************************999999.9**9......*******************************8666************* PP

                    CEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TT CS
  FAD_binding_2 186 revrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkd 281
                    ++  ++a+ +vlatgG+gr           ++ +tna ++tGdgl++a+rag++l+d  me++qfhPt++     g+g+L+te++rgeG+il++k 
     EGE27790.1 198 NISVFQANTTVLATGGAGR----------IFKASTNAYINTGDGLGMAVRAGIPLQD--MEFWQFHPTGVA----GAGVLLTEGCRGEGAILRNKH 277
                    *******************..........****************************..************....********************* PP

                    SSBTH.......GGGS-HHHHHHHHH.HHHHTTTS....CCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......EE CS
  FAD_binding_2 282 GrrFm.......nelasrdvvsrailekeiaeggs....eanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkvv 366
                    G+ Fm       ++la+rd vsr++  +ei+eg++    ++++++d++h l+a++l ++l+ + e+ +n+        +d++++p+p       vv
     EGE27790.1 278 GEAFMeryaptlKDLAPRDFVSRSMD-QEIKEGRGcgpnGDYIVMDMTH-LGAATLMKRLPSVFEISKNFGN------VDITKEPVP-------VV 358
                    **************************.************99********.*******************777......9********.......** PP

                    EEEEEES-EEEBETTSBE.............STTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 367 paqhytmgGvetdengrv.............ldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    p+ hy+mgG++t+ +g+v             l  +g++++GLYA+Ge+a+++vhganrlg nsl
     EGE27790.1 359 PTIHYMMGGIPTNIHGQVtvpnlegpvdeqgLYTEGRIVKGLYAIGECACVSVHGANRLGTNSL 422
                    **************************************************************98 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.1   1.8e-35   3.7e-32       3     126 ..     480     614 ..     478     616 .] 0.91

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 1.8e-35
                     HHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-S......... CS
  Succ_DH_flav_C   3 eLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfpe......... 88 
                     e++++mq+++gvfRt++ ++e+++++ +l  ++++++++dks v+N++ +eale+anl e+A+a++ sA  R+E+rGaH+  d+++         
      EGE27790.1 480 EIRNTMQSHAGVFRTQALMDEGVQKIMALAPKVEQIHLADKSAVFNTARIEALEVANLYEVAKATMISASLRHECRGAHMVVDYEHpadyepapl 574
                     899********************************************************************************9888899999** PP

                     .EETTT-SEEEEE...TT-SS-EEEEEE--GGG-.....-S--- CS
  Succ_DH_flav_C  89 .rdDenwlkhtlasldaakeeveleyepveletl.....kpkeR 126
                      r+D +w+khtl++    +e  ++ y+pv+ ++l      p+ R
      EGE27790.1 575 gRNDSEWMKHTLWY----SEGNKVVYKPVRKQPLtvdycVPRVR 614
                     *************4....45678999888887765554466665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.4   1.2e-06    0.0023       1      88 [.      18     124 ..      18     226 .. 0.55
   2 ?   -3.2   0.0       2.3   4.7e+03     144     202 ..     473     529 ..     452     579 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH...................HHHHHHHHHHHHHHHHHHHHSST CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas...................elarlslealeelreleeelgid 78 
                 d vi+GGG  G+ + ++L   g  V+++ k  ++ +  + +++g + ++l +  +                     ++  +++ea +  +ele   g++
  EGE27790.1  18 DAVIVGGGGSGMRASLQLVNGGmkVAVITKV-FPTRSHTVAAQGGIGASLGNMSPDNwhfhfydtvkgsdwlgdqdAIEYMCREAPKVVYELEHM-GMP 114
                 78****************8878*********.888788888888888877434433123444444444455555554445555555555555544.544 PP

                 TSEEEEEEEE CS
         DAO  79 idyrrtGlls 88 
                 +d    G+++
  EGE27790.1 115 FDRNADGTIY 124
                 4444444443 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.3
                 EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEE..EEE--GG CS
         DAO 144 dpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaada..vVnaaGa 202
                 ++++++  ++++++++++ +++++   +      k++ +  + + ++++ ad+  v n+a +
  EGE27790.1 473 NAQEVADEIRNTMQSHAGVFRTQALMDEGV---QKIMAL--APKvEQIHLADKsaVFNTARI 529
                 555666666666777766666662222211...123333..222222221122225555433 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.8   4.8e-06    0.0097       2      38 ..      18      52 ..      17     261 .. 0.68
   2 ?    2.4   0.0     0.038        76     258     279 ..     383     412 ..     362     432 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.8e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclng 38
                 d v++GgG  G++a+l+l + g+kv+++  ++ ++++
   EGE27790.1 18 DAVIVGGGGSGMRASLQLVNGGMKVAVI--TKVFPTR 52
                 78**************************..5555554 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.038
                  EE--TTS...BES.STTEEE-GGGC....T CS
                  xxxxxxx...xxx.xxxxxxxxxxx....x RF
  Pyr_redox_2 258 ivvdefl...rtn.vpgiyaiGDva....g 279
                    vde++   +   v+g+yaiG +a    +
   EGE27790.1 383 GPVDEQGlytEGRiVKGLYAIGECAcvsvH 412
                  567777654433459**********55542 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2   6.4e-05      0.13      17      49 ..      16      47 ..       6      69 .. 0.85
   2 ?    1.0   0.0      0.11   2.1e+02     209     233 ..     394     419 ..     384     420 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.4e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailer 49
                + D vivG+G sG+ a+  l +  ++kva++ +
  EGE27790.1 16 NFDAVIVGGGGSGMRASLQLVNG-GMKVAVITK 47
                6799*****************99.******975 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.11
                 CEEETTEEE-T.HHHHHHHT-EB--S CS
        Thi4 209 revvpnlyvaG.mevaevdganRmGp 233
                  ++v++ly+ G  +   v+ganR+G+
  EGE27790.1 394 GRIVKGLYAIGeCACVSVHGANRLGT 419
                 5799****988457889*******96 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.2   0.00015       0.3       1      31 [.      18      48 ..      18      69 .. 0.85
   2 ?    2.0   0.0     0.045        89     101     156 ..     159     217 ..     104     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithk 31
                d +++GgG +G+ A+l++ + G+kv+ it+ 
  EGE27790.1 18 DAVIVGGGGSGMRASLQLVNGGMKVAVITKV 48
                569************************9764 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.045
                 HHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-.....EEEECEEEE--TT-BT-EE CS
        GIDA 101 vteklenepnleiieeeveeliveekkvkgvvtedge.....tikakavviatGtflkgki 156
                 +++ le+  +  +     + ++++e++++gv+  d+e     +++a+++v+atG   +g+i
  EGE27790.1 159 YQKNLEKGTQFFVEWIALDLIKDDEGNINGVIALDQEtgnisVFQANTTVLATGG--AGRI 217
                 55566666666666666677777889999988665541112268888*******8..5554 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     4e-05      0.08     165     198 ..      17      50 ..       4      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
  Pyr_redox_3 165 qkvvViGgknSavDaAlelvrkgaeVtvvtrgse 198
                   + v++Gg+ S++ a l+lv+ g++V v+t+  +
   EGE27790.1  17 FDAVIVGGGGSGMRASLQLVNGGMKVAVITKVFP 50 
                  5789*************************98655 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.9   5.1e-05       0.1       3      36 ..      18      51 ..      16      62 .. 0.85
   2 ?   -3.7   0.0       2.8   5.5e+03     132     166 ..     180     215 ..     152     220 .. 0.54
   3 ?   -3.6   0.0       2.4   4.9e+03      12      66 ..     489     545 ..     488     575 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.1e-05
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrstt 36
                   d +IVG+G +G+ ++l L + G +v +++k   t
     EGE27790.1 18 DAVIVGGGGSGMRASLQLVNGGMKVAVITKVFPT 51
                   789**************************97655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.8
                    EECCCCCCCEEE.ECCTTEEEEEEEEEEEE--GTT- CS
  FAD_binding_3 132 eqdeegvtaevr.dketgeeetvrakYlvGaDGgrS 166
                    ++de +++ ++  d+etg+++ ++a+ +v a Gg +
     EGE27790.1 180 KDDEGNINGVIAlDQETGNISVFQANTTVLATGGAG 215
                    334444454444477777777777766666666655 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 2.4
                    HHHHHHHHHHHTTHHEEE..EESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHS CS
  FAD_binding_3  12 aGlmlallLseaGvrvvl..vekrsttvvlpradglnqrtmellrqlGledrilaeg 66 
                    aG+  ++ L   Gv+ ++    k ++ +   ++ ++n+  +e l+ + l + ++a+ 
     EGE27790.1 489 AGVFRTQALMDEGVQKIMalAPKVEQIHLADKSAVFNTARIEALEVANLYEVAKATM 545
                    677777888888888554114455555555588888888888887777666555554 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.5   0.00011      0.22       2      31 ..      18      47 ..      17      68 .. 0.92
   2 ?    1.0   0.0      0.07   1.4e+02     116     166 ..     159     215 ..     146     243 .. 0.59
   3 ?   -2.8   0.0      0.98     2e+03     373     384 ..     395     406 ..     392     413 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00011
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllek 31
                 d +++GgG +G+ a++++ + g +V+++ k
   EGE27790.1 18 DAVIVGGGGSGMRASLQLVNGGMKVAVITK 47
                 89*************************976 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.07
                  HHHHHHHT-EEE-S--EEEEECETTE.EE..EEE.....TTEEEEESEEEE----SS CS
  HI0933_like 116 lkelkeagvklrletevksvekeedgkfr..vktk....seeeleadklvlAtGGlS 166
                   ++  e+g ++ +e    ++ k+++g+++  ++++    + + ++a+++vlAtGG+ 
   EGE27790.1 159 YQKNLEKGTQFFVEWIALDLIKDDEGNINgvIALDqetgNISVFQANTTVLATGGAG 215
                  555555555555555555555555544321122221222456799**********86 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.98
                  TTSTTEEE-GGG CS
  HI0933_like 373 kkvpgLffaGEv 384
                  + v+gL+ +GE+
   EGE27790.1 395 RIVKGLYAIGEC 406
                  789********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4292.25
//
Query:       EGE27791.1  [L=236]
Description: succinate dehydrogenase iron-sulfur subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-32  110.2   0.0    7.8e-32  109.5   0.0    1.3  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
    4.2e-09   36.7  14.6    1.2e-07   32.0   3.1    2.2  2  Fer4_8    4Fe-4S dicluster domain
      2e-08   34.6   1.5    4.4e-08   33.6   1.5    1.7  1  Fer4_17   4Fe-4S dicluster domain
      5e-07   29.7   1.6    9.3e-07   28.9   1.6    1.4  1  Fer4_10   4Fe-4S dicluster domain
    0.00057   20.4   8.6     0.0038   17.8   8.6    2.2  2  Fer4_7    4Fe-4S dicluster domain
     0.0024   18.0   6.9      0.072   13.3   7.7    2.4  2  Fer4_9    4Fe-4S dicluster domain
     0.0035   18.2   3.1       0.79   10.7   1.2    2.4  2  Fer4_16   4Fe-4S double cluster binding domain
     0.0042   17.3   3.0       0.16   12.2   0.1    2.6  3  Fer4_18   4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.026   14.3  13.8       0.18   11.6   0.3    2.6  2  Fer4      4Fe-4S binding domain
      0.098   12.8   6.2        5.4    7.2   3.0    2.3  2  Fer4_21   4Fe-4S dicluster domain
       0.15   12.6   8.3        4.1    8.1   2.0    2.5  2  Fer4_4    4Fe-4S binding domain
        2.8    8.2  14.9       0.23   11.6   0.7    2.6  2  Fer4_6    4Fe-4S binding domain
        3.4    8.5   6.1         18    6.1   0.1    2.4  2  Fer4_15   4Fe-4S single cluster domain
          5    8.3  19.5        1.7    9.7   1.7    2.8  2  Fer4_3    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.0   6.1e-35   7.8e-32       2     108 ..       8     110 ..       7     111 .. 0.94

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 6.1e-35
      Fer2_3   2 lkvkRfdprrdrgkqkvqeyeveae.eedtvldaLlkikeevdptlafrasCregiCGscavainGkptlaCtatikdlakqkseieleplpkfpvirD 99 
                 ++++R+dp++d+ ++++q+y+ve   ++ ++ld+Ll++k+e d+tl+fr+sCregiCGs++++inGk+ laC  ++++l ++   i+++plp++pvi+D
  EGE27791.1   8 VEIYRYDPDKDN-APYMQSYTVELLdSDRMLLDVLLRLKRE-DETLTFRRSCREGICGSDGMNINGKNGLACLINMNTLPNK---ITIRPLPGLPVIKD 101
                 689*****7766.**********99688899********99.8***********************************9865...9************* PP

      Fer2_3 100 LvvDideml 108
                 LvvD+++++
  EGE27791.1 102 LVVDMNQFY 110
                 ******997 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   3.8   3.5e-06    0.0045      27      63 ..     127     159 ..     108     161 .. 0.72
   2 !   32.0   3.1   9.5e-11   1.2e-07       2      64 ..     144     217 ..     143     218 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.5e-06
      Fer4_8  27 dargeaaedvqeeqvleeeealwsCttcgaCtevCpv 63 
                  ++++ +  +++e+     ++l++C  c +C+++Cp 
  EGE27791.1 127 PPKERLQSPEEREK----MNGLYECILCACCSTACPS 159
                 44444444334444....489***************6 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 9.5e-11
      Fer4_8   2 lekCieCgaCqsaCp............vlrrtk.khlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 l++Ci C +C +aCp            ++   + +++ d+r+  ++ + +  +l++  +l++C + ++C++vCp+g
  EGE27791.1 144 LYECILCACCSTACPsfwwnpdkflgpSALLNGyRFIIDSRDTDTQ-A-RLARLDDPFSLFRCRGIMNCVSVCPKG 217
                 578***********77777777777775555666*********999.3.3344456889***************98 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   1.5   3.4e-11   4.4e-08       1      61 []     146     219 ..     110     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 3.4e-11
     Fer4_17   1 rCiqCgyClpeCpsyeaydne...pkkllraakl..........glleeaeke.......ekaslCieCgeCerkCPqgld 61 
                 +Ci C++C  +Cps+++++++   p  ll+ +++          +       +           +C ++ +C+++CP+gl+
  EGE27791.1 146 ECILCACCSTACPSFWWNPDKflgPSALLNGYRFiidsrdtdtqA-------RlarlddpFSLFRCRGIMNCVSVCPKGLN 219
                 6*****************997666888888887777765443322.......1334444379****************996 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   1.6   7.3e-10   9.3e-07       8      56 .]     146     215 ..     142     215 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 7.3e-10
     Fer4_10   8 tCirCgkCvkaCPadl.....................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                  Ci C+ C +aCP+ +                     +++  ++++     +   + +C g+ +Cv++CP
  EGE27791.1 146 ECILCACCSTACPSFWwnpdkflgpsallngyrfiidSRDTDTQARLARLDDPFSLFRCRGIMNCVSVCP 215
                 5*************99********************999999999999999999***************9 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   5.1    0.0023         3      32      50 ..     140     159 ..     106     160 .. 0.70
   2 !   17.8   8.6     3e-06    0.0038       2      51 ..     147     217 ..     146     218 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0023
      Fer4_7  32 eid.pekClgCgaCvavCPt 50 
                 +++   +C+ C  C ++CP+
  EGE27791.1 140 KMNgLYECILCACCSTACPS 159
                 33225679999999999996 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3e-06
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenek................gtekv.....eidpekClgCgaCvavCPtg 51 
                 Ci C  C  aCp+ + + d++  ++                +++++      ++  +C g  +Cv+vCP+g
  EGE27791.1 147 CILCACCSTACPSFWWNPDKFLGPSallngyrfiidsrdtdTQARLarlddPFSLFRCRGIMNCVSVCPKG 217
                 *****************9986655544444444443333322222233333345568************98 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   5.4    0.0046       5.8      33      48 ..     137     159 ..     118     162 .. 0.66
   2 !   13.3   7.7   5.7e-05     0.072       1      49 [.     146     217 ..     146     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0046
      Fer4_9  33 e.......eaCigCgaCveaCpk 48 
                 e        +Ci C  C  aCp+
  EGE27791.1 137 ErekmnglYECILCACCSTACPS 159
                 23344445679999999999996 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 5.7e-05
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase........................eaCigCgaCveaCpkg 49 
                 +C+ C  C +aCp+  +++d++ +  +l + ++                         +C g + Cv +Cpkg
  EGE27791.1 146 ECILCACCSTACPSFWWNPDKFLGPSALLN-GYrfiidsrdtdtqarlarlddpfslFRCRGIMNCVSVCPKG 217
                 5***********666666666655444422.2234666667777779999999****99************98 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   1.2   0.00062      0.79      41      65 ..     134     158 ..     106     160 .. 0.70
   2 !    7.1   0.0     0.008        10       2      14 ..     204     216 ..     181     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00062
     Fer4_16  41 laedeekckkqeaitgCdiCqdvCP 65 
                  +e++ek++  ++++ C+ C ++CP
  EGE27791.1 134 SPEEREKMNGLYECILCACCSTACP 158
                 33333444445899**********9 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.008
     Fer4_16   2 CgtCgkCaevCPt 14 
                 C +  +C++vCP 
  EGE27791.1 204 CRGIMNCVSVCPK 216
                 4444555555554 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.9     5e+03      71      98 ..      57      84 ..      54      92 .. 0.61
   2 !   12.2   0.1   0.00012      0.16      21      73 ..     105     159 ..      95     161 .. 0.64
   3 ?    5.1   0.0     0.019        24      61      76 ..     204     219 ..     180     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.9
     Fer4_18 71 cPtgidirkGlqleciscllcidacdkv 98
                c  gi   +G+ ++  + l c+   +++
  EGE27791.1 57 CREGICGSDGMNINGKNGLACLINMNTL 84
                5566666677777777777666555554 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00012
     Fer4_18  21 deetllvvydakrGekiagrkk.ekkalk.ekeerkekgagdcidcescvkvcPt 73 
                 d + +  +y+++    i ++ +  k+ l+  +e++k +g  +ci c  c + cP 
  EGE27791.1 105 DMNQFYEQYEKVHPYLINNQPApPKERLQsPEEREKMNGLYECILCACCSTACPS 159
                 55556666666666555544331334444044555678889************95 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.019
     Fer4_18  61 cidcescvkvcPtgid 76 
                 c     cv+vcP g++
  EGE27791.1 204 CRGIMNCVSVCPKGLN 219
                 777789******9986 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   7.9     0.015        19       7      19 ..     146     158 ..     145     159 .. 0.93
   2 ?   11.6   0.3   0.00014      0.18       7      21 ..     203     217 ..     199     217 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.015
                 TSSS-THHHHHST CS
        Fer4   7 kCigCGaCvevCP 19 
                  Ci C  C  +CP
  EGE27791.1 146 ECILCACCSTACP 158
                 5************ PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00014
                 TSSS-THHHHHSTTT CS
        Fer4   7 kCigCGaCvevCPvg 21 
                 +C g ++Cv+vCP g
  EGE27791.1 203 RCRGIMNCVSVCPKG 217
                 799**********76 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   3.0    0.0042       5.4      40      52 ..     146     158 ..     133     160 .. 0.76
   2 ?    6.3   0.1    0.0081        10      40      52 ..     203     215 ..     184     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0042
     Fer4_21  40 eCvGCnlCssvCP 52 
                 eC+ C+ Cs+ CP
  EGE27791.1 146 ECILCACCSTACP 158
                 6777777777777 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0081
     Fer4_21  40 eCvGCnlCssvCP 52 
                 +C G   C+svCP
  EGE27791.1 203 RCRGIMNCVSVCP 215
                 69999******** PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.0    0.0032       4.1       3      15 ..     146     158 ..     137     171 .. 0.91
   2 ?    7.5   0.5    0.0051       6.5       6      16 ..     203     216 ..     202     221 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0032
      Fer4_4   3 rCigCgsCvaaCP 15 
                  Ci C +C  aCP
  EGE27791.1 146 ECILCACCSTACP 158
                 5************ PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0051
      Fer4_4   6 gCgs...CvaaCPq 16 
                 +C+    Cv++CP 
  EGE27791.1 203 RCRGimnCVSVCPK 216
                 5664444******6 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   7.7      0.62   7.9e+02       9      20 ..     147     158 ..     147     160 .. 0.95
   2 ?   11.6   0.7   0.00018      0.23       8      22 ..     203     217 ..     203     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.62
      Fer4_6   9 CigCgdCvrvCP 20 
                 Ci C  C ++CP
  EGE27791.1 147 CILCACCSTACP 158
                 ************ PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00018
      Fer4_6   8 kCigCgdCvrvCPeg 22 
                 +C g ++Cv+vCP g
  EGE27791.1 203 RCRGIMNCVSVCPKG 217
                 69999********65 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   2.8      0.13   1.7e+02       7      21 ..     146     160 ..     145     167 .. 0.89
   2 ?    6.1   0.1     0.014        18       7      20 ..     203     216 ..     202     233 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.13
     Fer4_15   7 aCigcglCvaeapev 21 
                 +Ci c+ C +++p +
  EGE27791.1 146 ECILCACCSTACPSF 160
                 6***********975 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.014
     Fer4_15   7 aCigcglCvaeape 20 
                 +C g+ +Cv ++p+
  EGE27791.1 203 RCRGIMNCVSVCPK 216
                 7***********98 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   9.5      0.11   1.4e+02       1      13 [.     147     159 ..     147     159 .. 0.95
   2 ?    9.7   1.7    0.0013       1.7       4      14 ..     204     217 ..     203     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.11
      Fer4_3   1 CtgCgaCvevCPv 13 
                 C+ C  C  +CP+
  EGE27791.1 147 CILCACCSTACPS 159
                 ************5 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0013
      Fer4_3   4 Cg...aCvevCPvg 14 
                 C+    Cv vCP+g
  EGE27791.1 204 CRgimNCVSVCPKG 217
                 433448******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1764.60
//
Query:       EGE27792.1  [L=35]
Description: hypothetical protein EA1_00335 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 294.86
//
Query:       EGE27793.1  [L=951]
Description: 2-oxoglutarate dehydrogenase E1 component [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-63  214.1   0.0    2.2e-63  213.2   0.0    1.5  1  Transket_pyr     Transketolase, pyrimidine binding domain
    4.1e-53  180.3   0.0    1.1e-52  178.9   0.0    1.6  2  E1_dh            Dehydrogenase E1 component
    2.7e-47  160.3   0.0      6e-47  159.1   0.0    1.6  1  OxoGdeHyase_C    2-oxoglutarate dehydrogenase C-terminal
    1.1e-11   44.2   2.4    8.8e-11   41.2   3.0    2.1  2  2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.2   0.0   4.9e-67   2.2e-63       2     178 .]     599     794 ..     598     794 .. 0.98

  Alignments for each domain:
  == domain 1  score: 213.2 bits;  conditional E-value: 4.9e-67
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT................TEGEEE--S-HHHHHHHHHHHHHHCT.TEEEEEEEE CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg................egrvidsgisEqavlgfavGaalagp.llviveaqF 81 
                   +++w +ae++a+a+l++e+  v+++g+Dv++gtfs+r++ l++ +                ++  ++s +sE+avl+f++G+a++ p +l+i+eaqF
    EGE27793.1 599 PLNWGAAETLAYASLAAEGSLVRITGEDVGRGTFSHRHSELYNMNdgsmyiplqhitkdqaRFATYNSLLSEEAVLAFEYGYATTVPnALIIWEAQF 695
                   689**********************************************************9*********************************** PP

                   HHHHGGGHHGGHHHHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTT..EEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  82 gdFangAqiyadqairsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipg..lkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   gdF+ngAq+++dq+i+sge+k+++ +g++++lp+g++++Gpeh+sa+le+fl+l+++  ++v++P++pa+++h+lrr++ r+ rkP++++ pksllr
    EGE27793.1 696 GDFVNGAQVVIDQFISSGETKWQRVCGLTMLLPHGFEGQGPEHSSARLERFLQLCAEdnMQVITPTTPAQIFHALRRQVVRPIRKPLIVMSPKSLLR 792
                   *******************************************************9888************************************** PP

                   .T CS
  Transket_pyr 177 hk 178
                   h+
    EGE27793.1 793 HP 794
                   85 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.9   0.0   2.4e-56   1.1e-52       8     282 ..     214     518 ..     207     522 .. 0.89
   2 ?   -2.8   0.0      0.51   2.3e+03      78     110 ..     641     675 ..     626     695 .. 0.74

  Alignments for each domain:
  == domain 1  score: 178.9 bits;  conditional E-value: 2.4e-56
                 HHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TT..SEEEES.S--HHHHHHTT--..HHHHHHHHTT-T...TTSSGTT-..-E..B.....T CS
       E1_dh   8 rvedaldalykrkkrigfyhlsagqealkvgiaaaleke..Dliite.YReagvllargls..leeilaeltgkv...kgkggsrh.elmyae.....k 92 
                  +e+ l+++y   kr+g++  +  ++a++ +++ a +++  +++i + +R++ +ll++ l      ++ e++gkv   +g+g++++ ++  ++      
  EGE27793.1 214 GLEKYLARKYTGVKRFGLEGGESFIPAVHEMVQRAGTHGskEVVIGMaHRGRLNLLVNILGkkPSDLFDEFDGKVqpvNGSGDVKYhNGFSSNvmtpgG 312
                 567788999999**********************99988779988767*******9986654499**********999888888875554222111113 PP

                 T..BEEE-SSTTTH..HHHHHHHHHHHH..........HHTS---EEEEEEGGG.TT-HHHHHHHHHHHHTT--E...EEEEEEESEETTEEH.HHH-S CS
       E1_dh  93 esrilggngivgaq..vplvaGialaak..........iegkkevailliGDgA.anqGdvyealnlaalwklpv...ifvveNNkygisTea.ekasa 174
                 e ++  + ++++++  +p+++G+++a +          i++ +++ ++++GD+A a+qG   e+++++++  + +   +++v NN+ g++T++ e a++
  EGE27793.1 313 EMHLALAFNPSHLEivSPVLQGSVRARQarrsekyglqIDNSTVLPLVVHGDAAlAGQGVNQETFQMSQTRAYKTggtVHIVINNQVGFTTSRiEDARS 411
                 446677777777778899999*****************************************************9999*************65166788 PP

                 ---GGG..TTTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHH CS
       E1_dh 175 skeladrargvgipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeel 273
                 +++ +d+a+ v +p+l+V+g+Dp+av  A++ A++++re+ +++++++++YR++gH+esD+ps+++ + ++  ++k ++  +++ e+Lv++g++++e+ 
  EGE27793.1 412 TEYCTDVAKMVHAPILHVNGDDPEAVVFASQLAVDYRREFGKDVMLDIFCYRRNGHNESDEPSATQ-PLMYAVIKKLPTTRAQYVEQLVQEGIITHEQG 509
                 88999*************************************************************.******************************** PP

                 HHHHHHHHH CS
       E1_dh 274 keiekevrk 282
                  ++e+ +r+
  EGE27793.1 510 AKLEDDYRE 518
                 **9999987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.51
                 TTSSGTT-..-E..BTT...BEEE-SSTTTHHHHH CS
       E1_dh  78 kgkggsrh.elmyaekes.rilggngivgaqvplv 110
                 + + gs++ +l+  +k + r+ + n+ ++ ++ l+
  EGE27793.1 641 NMNDGSMYiPLQHITKDQaRFATYNSLLSEEAVLA 675
                 55678899888877777669999999888775444 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   0.0   1.3e-50     6e-47       1     152 []     797     943 ..     797     943 .. 0.96

  Alignments for each domain:
  == domain 1  score: 159.1 bits;  conditional E-value: 1.3e-50
  OxoGdeHyase_C   1 rSsleelaegtsFqrvledeeeealkepekvkrvvlcsGkvyydLlkerekkekekdvaivriEqlyPfpfeelkeelekYpnakelvWvQeEpkN 96 
                    +S+leela+g +F++vl++ ++    ++e+v+r+vlc GkvyydLl++r+k ++ +++aivriEqlyP+p e++ +e++kYpn++e++W+QeEp N
     EGE27793.1 797 TSNLEELASG-KFETVLPEIDS---INHEQVTRLVLCGGKVYYDLLDQRRKLGQ-EHIAIVRIEQLYPLPEERILAEIDKYPNLEEIMWAQEEPLN 887
                    599*******.*********99...469**********************9976.9**************************************** PP

  OxoGdeHyase_C  97 qGawsfveprletvlkekkkkkkklryvgreasaspAtGskkvhkkeqealleeaf 152
                    qGaw++++p+l +++  + +k+k ++  +r+a+a+pAtGs k h+++q+al++ea+
     EGE27793.1 888 QGAWYYLAPELFRMVVPAPTKAKIITPSARPAAAAPATGSPKLHTEQQKALIAEAL 943
                    ***********9999888889999*****************************997 PP

>> 2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   3.0     2e-14   8.8e-11       4      39 ..      16      51 ..      13      53 .. 0.91
   2 ?   -0.9   0.0      0.29   1.3e+03       6      15 ..     489     498 ..     487     500 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2e-14
  2-oxogl_dehyd_N  4 LsgtnaaYiEelYeayleDPsSVdesWrayFknled 39
                     L++ +aaY+E+lYe+y +D +SV+++W++yF+ + +
       EGE27793.1 16 LAADSAAYVEALYEQYMADSQSVSKEWQDYFATYRQ 51
                     67889**************************98765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.29
  2-oxogl_dehyd_N   6 gtnaaYiEel 15 
                      +t a+Y+E+l
       EGE27793.1 489 TTRAQYVEQL 498
                      5779****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 6512.93
//
Query:       EGE27794.1  [L=412]
Description: 2-oxoglutarate dehydrogenase E2 component [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-83  279.3   0.1      1e-82  277.1   0.0    1.9  2  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    1.6e-19   69.5   2.2    4.1e-19   68.2   1.7    2.0  2  Biotin_lipoyl    Biotin-requiring enzyme
    9.4e-13   48.3   0.3    2.5e-12   46.9   0.3    1.7  1  E3_binding       e3 binding domain
    0.00033   20.4   0.0      0.001   18.9   0.0    1.9  1  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.036   14.0   0.4       0.11   12.5   0.4    1.8  1  RnfC_N           RnfC Barrel sandwich hybrid domain
      0.045   13.6   0.8       0.14   12.0   0.8    1.9  1  GCV_H            Glycine cleavage H-protein
      0.062   14.0   0.9       0.25   12.0   0.5    2.2  2  HlyD_3           HlyD family secretion protein


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.28   7.2e+02     103     120 ..      48      65 ..      47      84 .. 0.86
   2 !  277.1   0.0   4.1e-86     1e-82       4     232 ..     183     409 ..     180     410 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.28
                   --------EEEE--GGG- CS
  2-oxoacid_dh 103 vatprGLlvPviknadkk 120
                   va ++G+++ ++kn+d+ 
    EGE27794.1  48 VAPDNGVITSIVKNVDDT 65 
                   67789**********976 PP

  == domain 2  score: 277.1 bits;  conditional E-value: 4.1e-86
                   XXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS--EE CS
  2-oxoacid_dh   4 eervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeeekeivvkkhvniG 100
                   e+r+p++++rk+ia+rl  + qe++++t+++ev+++ l++lr+++k++++k++ +kl ++++++ka++ Alk+fP++nas+d+ +  i+++ ++++G
    EGE27794.1 183 EKREPMTRLRKRIAERLLSATQETAMLTTFNEVNMKPLMDLRAKYKDRFEKRHGVKLGFMSLFVKAATEALKRFPAVNASIDGSD--IIYHGYYDVG 277
                   799**********************************************98888*******************************..********** PP

                   EE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-HT---E CS
  2-oxoacid_dh 101 vAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkegelvvrkv 197
                   vAv+++rGL+vPv+++ d++s++++++ ++++a+kar+gkl+ e+++ggtfti+N G++G+  +tPiinppq+aIlg+++i+erp++++ge+v+ ++
    EGE27794.1 278 VAVSSDRGLVVPVLRDTDRMSMADVEAGIRDYATKARDGKLSIEEMTGGTFTITNGGVFGSLLSTPIINPPQTAILGMHAINERPMAVDGEVVILPM 374
                   ************************************************************************************************* PP

                   EEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXX CS
  2-oxoacid_dh 198 mtlslsaDHRvidGaeaarFlntlkkllenpeell 232
                   m+l ls+DHR+idG+ea++Fl t+k+l+e+p+ ll
    EGE27794.1 375 MYLALSYDHRLIDGKEAVQFLVTIKELIEDPSMLL 409
                   *******************************9887 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   1.7   1.6e-22   4.1e-19       2      72 ..       3      74 ..       2      75 .. 0.96
   2 ?   -3.0   0.0       2.6   6.6e+03      21      32 ..     176     187 ..     166     191 .. 0.61

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 1.6e-22
                   EEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  2 eiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72
                   eik+P + esv++g +ve++v++G++V+ +q laeve++K++ ei ap++Gv+++i+++++dtv + +++a+
     EGE27794.1  3 EIKAPVFPESVQDGtIVEWHVAEGEAVSRDQLLAEVETDKVVLEIVAPDNGVITSIVKNVDDTVLSAEVVAI 74
                   89**************************************************************99888875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
                    SSTTCEE-TTSE CS
  Biotin_lipoyl  21 vkvGdkVkagqv 32 
                     +vG+ +++ ++
     EGE27794.1 176 TAVGQRIEKREP 187
                    356666666555 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.3   9.6e-16   2.5e-12       4      34 ..     130     160 ..     129     161 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 9.6e-16
                 -HHHHHHHHHCT--TTTS---CTTTBE-HHH CS
  E3_binding   4 sPaaRklAkelGidLsdvkGtGpgGRItkeD 34 
                 sPa+Rk Ake G++++dv+G+G+gGR+tk D
  EGE27794.1 130 SPAVRKAAKETGVNPADVQGSGRGGRVTKSD 160
                 9*****************************9 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     4e-07     0.001       9      37 ..       8      42 ..       2      47 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4e-07
  Biotin_lipoyl_2  9 v......sGrVaqlnVkdGqrVkaGdvLaelDsra 37
                     v      +G++++++V +G  V   ++Lae ++++
       EGE27794.1  8 VfpesvqDGTIVEWHVAEGEAVSRDQLLAEVETDK 42
                     4444456***********************98765 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   4.1e-05      0.11      39      94 ..      16      72 ..       4      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.1e-05
      RnfC_N 39 GapakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahgsgveav 94
                G+  +  v++g+ V + q++ae e+  v +++ a+  G +++i k +  +   +e v
  EGE27794.1 16 GTIVEWHVAEGEAVSRDQLLAEVETdKVVLEIVAPDNGVITSIVKNVDDTVLSAEVV 72
                66677889**************987788***************98876665555555 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.8   5.6e-05      0.14      40      80 ..      24      64 ..      12      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
                -TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-GGGTT CS
       GCV_H 40 evgtkvkkgeslaavEsvKaasevyapvsGevvevNeklee 80
                 +g++v+ ++ la vE+ K + e+ ap +G ++ + +++++
  EGE27794.1 24 AEGEAVSRDQLLAEVETDKVVLEIVAPDNGVITSIVKNVDD 64
                469******************************99999887 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   9.9e-05      0.25       5      40 ..      13      47 ..      11      61 .. 0.84
   2 ?   -0.7   0.0      0.88   2.3e+03       2      28 ..      47      73 ..      46      78 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.9e-05
      HlyD_3  5 pvdGvvvelnveegevvqagdelleiippdtllvea 40
                  dG++ve++v ege v++ + l+e+  +d++ +e+
  EGE27794.1 13 VQDGTIVEWHVAEGEAVSRDQLLAEVE-TDKVVLEI 47
                579***********************9.66666555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.88
      HlyD_3  2 lrApvdGvvvelnveegevvqagdell 28
                + Ap  Gv++++  ++ + v + ++++
  EGE27794.1 47 IVAPDNGVITSIVKNVDDTVLSAEVVA 73
                789999999998888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3094.10
//
Query:       EGE27795.1  [L=482]
Description: dihydrolipoamide dehydrogenase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-66  222.1   6.0    1.4e-65  221.5   6.0    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.7e-32  111.9   0.7    4.3e-32  110.7   0.7    1.7  1  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
      3e-17   63.0   9.0    3.6e-15   56.3   1.3    3.5  4  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    1.4e-09   37.6   4.1    6.4e-07   28.9   0.1    2.4  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    6.9e-07   28.8   1.8     0.0015   17.9   0.6    2.3  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    4.9e-06   25.9   0.2    4.9e-06   25.9   0.2    3.0  4  GIDA           Glucose inhibited division protein A
      1e-05   25.5   1.3    6.3e-05   22.9   0.4    2.4  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
    2.4e-05   23.6   8.2    0.00018   20.7   0.8    3.7  4  FAD_binding_2  FAD binding domain
    4.9e-05   22.9   0.5    4.9e-05   22.9   0.5    1.9  2  FAD_oxidored   FAD dependent oxidoreductase
    9.3e-05   22.6   3.5      0.085   13.1   0.2    2.9  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00014   20.8   7.0     0.0099   14.6   0.2    3.5  4  HI0933_like    HI0933-like protein
     0.0012   19.4   0.1       0.87   10.1   0.0    2.6  2  XdhC_C         XdhC Rossmann domain
      0.002   17.5   0.5     0.0091   15.4   0.0    2.1  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      0.006   15.9   6.9       0.66    9.2   0.3    3.4  3  FAD_binding_3  FAD binding domain
     0.0087   15.7  14.2      0.096   12.2   0.1    4.1  4  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.028   13.7   0.2      0.028   13.7   0.2    2.0  2  Thi4           Thi4 family
      0.053   13.5   0.0        0.1   12.5   0.0    1.5  1  KH_7           KH domain
       0.08   13.5   0.1       0.23   12.1   0.1    1.9  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
       0.14   11.2   1.3       0.82    8.6   0.2    2.3  3  Lycopene_cycl  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.5   6.0   1.4e-68   1.4e-65       1     294 []       5     337 ..       5     337 .. 0.93

  Alignments for each domain:
  == domain 1  score: 221.5 bits;  conditional E-value: 1.4e-68
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE.........TTHCHHHCSHHHHCHHHHHHHHHHHHH.........................HHHHCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve.........legtclnggcllskallgvaedaeias.........................evvkkln 64 
                  +d+vviGgGp+G++aa++ aq g+ v+++e         l+gtcln+gc++skall ++++ e  +                           vk l+
   EGE27795.1   5 YDLVVIGGGPGGYEAAIRGAQLGFSVACIEkrvhkgepaLGGTCLNVGCIPSKALLDSSHRFEATKheltdhgittgdvnidiakmlerkdSIVKGLT 102
                  689**************************88999999*************************9888*************************999**** PP

                  HHCCCCHCCTCEEEEESCEEEEETEEEC.........TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  65 qgielllgeevvkidpgkkkvklekkke.........gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyi 153
                  qg+  ll+ ++v+  +g++++++ k  e         gde +i++++++lA Gs p  +++       g+   ++ds+ al+ +++pkr+ v+G+G+i
   EGE27795.1 103 QGVAGLLKGNGVDWLQGWGTLVDGKGAEkqvkftpleGDESTITAKYVILAAGSVPIEIPVAKT---DGEY--IVDSTGALEFAEVPKRLGVIGAGVI 195
                  ********9*************98877799**************************99865533...4444..89*********************** PP

                  HHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE...EEETTSCEEEESEEEE-S-EEES-HHCS.HC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
  Pyr_redox_2 154 GvElAaalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngekle...vvledgeeidadlvvvavGvrpstelle.ek 247
                  G+El +++++lg+ev++ ea++++l   dk++s+++++ l+k+G ++++ t+v+ ++ ++ ++     v ++ ++   d ++v+vG+r+ +e l  e+
   EGE27795.1 196 GLELGSVWRRLGAEVVVYEAMPEFLAVADKDISKEAAKLLKKQGLDIRVDTKVTGAEVKDGQVIvttDVKGETQTDTFDKLIVCVGRRAYSEKLLaEN 293
                  ******************************************************9988888343212333344447999**********9999999** PP

                  CT-EEEETTEEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 248 lglelderggivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                   g+el+erg + vd++++tn +g+yaiGD +   +gp+la++A+++G
   EGE27795.1 294 CGIELTERGLVAVDDQCKTNLDGVYAIGDLV---RGPMLAHKAMEEG 337
                  *******************************...**********998 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.7   4.5e-35   4.3e-32       3     110 .]     358     465 ..     356     465 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 4.5e-35
                    EEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSBSS CS
  Pyr_redox_dim   3 tvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladtihi 98 
                    +v++t+pe+a+vGl+e+ A+++g+e+k+g+f+++angrala++e  g++K+vadakt+++lG+h v+ gag+++++  +a+++  ++edl+   ++
     EGE27795.1 358 SVIYTHPEIAWVGLSEQAATEQGYEVKTGSFSLSANGRALAQGEGVGLIKVVADAKTDRLLGMHAVSVGAGDIVHQGMIAMEFVSSIEDLQLMTFA 453
                    79********************************************************************************************** PP

                    SSSTGGGGHCHH CS
  Pyr_redox_dim  99 hPtlsealkeaa 110
                    hPt+sea++eaa
     EGE27795.1 454 HPTVSEAVHEAA 465
                    ********9985 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.3    0.0014       1.3       2      31 ..       7      36 ..       6      47 .. 0.91
   2 ?   -2.7   0.0       9.9   9.4e+03       8      21 ..      81      94 ..      80     108 .. 0.74
   3 !   56.3   1.3   3.9e-18   3.6e-15       2      73 ..     187     258 ..     186     267 .. 0.92
   4 ?   -2.0   0.0       5.9   5.6e+03       8      21 ..     434     447 ..     423     459 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0014
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                +vv+GgG  g E+A   a+lg +V ++e +
  EGE27795.1  7 LVVIGGGPGGYEAAIRGAQLGFSVACIEKR 36
                79**********************999976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.9
                SHHHHHHHHHHHHT CS
   Pyr_redox  8 GyiglElAgalael 21
                G+++++ A++l + 
  EGE27795.1 81 GDVNIDIAKMLERK 94
                77888888887665 PP

  == domain 3  score: 56.3 bits;  conditional E-value: 3.9e-18
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgv 73 
                 + v+G+G+iglEl++++++lg++V v e+++++l + D+++sk+ ++ l+k+g +++ +tkv+  e ++ +v
  EGE27795.1 187 LGVIGAGVIGLELGSVWRRLGAEVVVYEAMPEFLAVADKDISKEAAKLLKKQGLDIRVDTKVTGAEVKDGQV 258
                 67****************************************************************888763 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 5.9
                 SHHHHHHHHHHHHT CS
   Pyr_redox   8 GyiglElAgalael 21 
                 G i++E+ + + +l
  EGE27795.1 434 GMIAMEFVSSIEDL 447
                 88999998887776 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   1.3   0.00071      0.67       1      30 [.       8      36 ..       8      41 .. 0.91
   2 !   28.9   0.1   6.8e-10   6.4e-07     116     305 .]     138     321 ..     128     321 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00071
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 ++iG+GP G +aai   ++g+ ++  +Ek 
   EGE27795.1  8 VVIGGGPGGYEAAIRGAQLGF-SVACIEKR 36
                 79*******************.79999997 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 6.8e-10
  Pyr_redox_3 116 vetsketyeAkkviiAtGefdkPnklnipGeeklvkhys.kvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkp 212
                  +e +++t++Ak+vi+A+G    P    +   +   ++ s    ef+++  +++ ViG++  + +      r gaeV v+    e  +           
   EGE27795.1 138 LEGDESTITAKYVILAAGS--VPIEIPVAKTDGEYIVDStGALEFAEV-PKRLGVIGAGVIGLELGSVWRRLGAEVVVYEAMPEFLAV-------ADK 225
                  677889************9..777666655553334433034467555.6899**************************999866554.......356 PP

  Pyr_redox_3 213 dienrleelvkeekikvlfnaevkeikekeeeykvkte..dgkkvevkddvvlatGykpdlsf.lkk.slfeldedgrpvlteeteetnvpglflaG 305
                  di ++ ++l+k++ +++  +++v+  + k+ ++ v+t+   ++++++ d+ ++++G +   +  l++ +++el+e g +++++ ++ tn++g++ +G
   EGE27795.1 226 DISKEAAKLLKKQGLDIRVDTKVTGAEVKDGQVIVTTDvkGETQTDTFDKLIVCVGRRAYSEKlLAEnCGIELTERGLVAVDD-QCKTNLDGVYAIG 321
                  77777788888877999999999999999888888865115566667899******998875515547*****9999999987.579*******999 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00049      0.46      31      64 ..       7      40 ..       3      91 .. 0.86
   2 !   17.9   0.6   1.6e-06    0.0015      29     102 ..     185     265 ..     176     275 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00049
                 EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHH CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvrparl 64
                  +viGgG  G +A+   ++lg +V  +++r ++ 
   EGE27795.1  7 LVVIGGGPGGYEAAIRGAQLGFSVACIEKRVHKG 40
                 69**************************998765 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.6e-06
                  -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEE.......HCHHHHHHHHHHHH-SEEEE---BT CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvev.......lksqeellaeavkeadvvigtvlip 102
                   +  viG+Gv Gl+  ++ ++lga+V+v++  p+ l   ++ + ++  ++       ++ + +    +vk+ +v+++t  + 
   EGE27795.1 185 KRLGVIGAGVIGLELGSVWRRLGAEVVVYEAMPEFLAVADKdISKEAAKLlkkqgldIRVDTKVTGAEVKDGQVIVTT-DVK 265
                  5677********************************999998777767777778888888888888889998888888.555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.2   5.2e-09   4.9e-06       1      47 [.       6      60 ..       6      87 .. 0.88
   2 ?   -2.3   0.0       1.8   1.7e+03     135     150 ..     141     156 ..     130     167 .. 0.84
   3 ?    1.8   0.4       0.1        99       4      28 ..     189     213 ..     186     235 .. 0.85
   4 ?   -1.4   0.0      0.97   9.2e+02     113     169 ..     234     291 ..     219     312 .. 0.54

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5.2e-09
                CEEEE-SSHHHHHHHHHHHHTT--EEEE........ES-GGGTT--SSSSEEE-T CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi........thkldtiaelsCnpsiggi 47
                d++ViGgG  G+eAA+  a+lG++v+ i            +t+++++C ps   +
  EGE27795.1  6 DLVVIGGGPGGYEAAIRGAQLGFSVACIekrvhkgePALGGTCLNVGCIPSKALL 60
                689***************************988886666789********98765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.8
                 TS-EEEECEEEE--TT CS
        GIDA 135 dgetikakavviatGt 150
                 d++ti+ak v++a+G+
  EGE27795.1 141 DESTITAKYVILAAGS 156
                 67899**********8 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.1
                 EE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   4 ViGgGhAGceAAlaaarlGakvlLi 28 
                 ViG+G  G+e      rlGa+v+ +
  EGE27795.1 189 VIGAGVIGLELGSVWRRLGAEVVVY 213
                 9*********************998 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.97
                 EEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT........-BT-EEEETTEEEESSCTT CS
        GIDA 113 iieeeveeliveekkvkgvvtedgetikakavviatGt........flkgkihigekelsaGrlg 169
                 +++++  ++       ++ ++ +g+++k+ +v+++t          f k  + +g++++s+  l+
  EGE27795.1 234 LLKKQGLDI-------RVDTKVTGAEVKDGQVIVTTDVkgetqtdtFDKLIVCVGRRAYSEKLLA 291
                 333333333.......3344445555555666666533222333335555555555555555555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.48   4.5e+02       3      32 ..       8      37 ..       6      75 .. 0.89
   2 !   22.9   0.4   6.6e-08   6.3e-05       2      56 ..     187     241 ..     186     272 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.48
                EEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdise 32
                 viG G  G + a   a+ g++V  ++ + 
  EGE27795.1  8 VVIGGGPGGYEAAIRGAQLGFSVACIEKRV 37
                69**********************998765 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 6.6e-08
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS- CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklk 56 
                 ++viGaG++G ++ +v  + g eVv+++  +e+l+ a + i+k+ +kl +k+ l+
  EGE27795.1 187 LGVIGAGVIGLELGSVWRRLGAEVVVYEAMPEFLAVADKDISKEAAKLLKKQGLD 241
                 69*********************************************99998776 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.8   1.9e-07   0.00018       1      33 [.       6      38 ..       6      51 .. 0.91
   2 ?   -1.4   0.0      0.98   9.2e+02     184     202 ..     139     157 ..     112     175 .. 0.70
   3 ?    0.1   0.1      0.34   3.2e+02       4      34 ..     189     219 ..     187     225 .. 0.94
   4 ?    4.3   0.0     0.019        18     375     405 ..     295     327 ..     289     335 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.9e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   D++ViG+G +G+ AA++ a+ G +va++ek   
     EGE27795.1  6 DLVVIGGGPGGYEAAIRGAQLGFSVACIEKRVH 38
                   89***************************9765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.98
                    TTCEEEEEESEEEE----- CS
  FAD_binding_2 184 sgrevrirakavvlatgGf 202
                    +g e +i+ak v+la+g +
     EGE27795.1 139 EGDESTITAKYVILAAGSV 157
                    5666677777777777765 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.34
                    EE--SHHHHHHHHHHHHTTT-EEEEESSSGG CS
  FAD_binding_2   4 ViGsGlAGLaAAleaaeaGlkvavvekeqef 34 
                    ViG+G+ GL  +   ++ G++v+v e ++ef
     EGE27795.1 189 VIGAGVIGLELGSVWRRLGAEVVVYEAMPEF 219
                    9*************************99885 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.019
                    EEEBETTSBE..STTEEESSBTEEE-STCEESS CS
  FAD_binding_2 375 Gvetdengrv..ldadgqpipGLYAaGevaagg 405
                    G+e +e+g v  +d+ +++++G YA+G    g 
     EGE27795.1 295 GIELTERGLVavDDQCKTNLDGVYAIGDLVRGP 327
                    677777776666888888*********987665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.5   5.2e-08   4.9e-05       1      35 [.       6      40 ..       6     156 .. 0.72
   2 ?   -1.8   0.1       1.6   1.5e+03      93     124 ..     231     263 ..     218     273 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 5.2e-08
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlG 35
                  D+vV+GGgp+G+ AAi  a+ G +v+ +e+r + G
    EGE27795.1  6 DLVVIGGGPGGYEAAIRGAQLGFSVACIEKRVHKG 40
                  99***************************975532 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
  FAD_oxidored  93 leemlaeagvtvllntrlvevekegkr.iesvt 124
                   + ++l+++g+++  +t+++++e+++++ i    
    EGE27795.1 231 AAKLLKKQGLDIRVDTKVTGAEVKDGQvIVTTD 263
                   46788999************9998755443333 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2     9e-05     0.085       1      30 [.       9      38 ..       9      85 .. 0.92
   2 !    9.5   0.1    0.0012       1.2       1      28 [.     189     216 ..     189     219 .. 0.94
   3 ?   -2.9   0.0         9   8.5e+03      11      24 ..     231     244 ..     231     244 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   ++G+G +G  aA + a+ gf+v ++ekr +
     EGE27795.1  9 VIGGGPGGYEAAIRGAQLGFSVACIEKRVH 38
                   8**************************966 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0012
                    EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekr 28 
                    ++GaG+ Gl + +  ++ g++v+++e+ 
     EGE27795.1 189 VIGAGVIGLELGSVWRRLGAEVVVYEAM 216
                    8*************************85 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 9
                    HHHHHHCCTEEEEE CS
  NAD_binding_8  11 aAylLakagfdvll 24 
                    aA lL+k+g+d+ +
     EGE27795.1 231 AAKLLKKQGLDIRV 244
                    7999****999865 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   1.1e-05    0.0099       2      36 ..       6      40 ..       5      63 .. 0.91
   2 ?   -2.6   0.0       1.8   1.7e+03     147     164 ..     140     156 ..     124     171 .. 0.77
   3 ?    2.2   0.1     0.061        58       5      35 ..     189     219 ..     185     222 .. 0.92
   4 !    6.1   0.2     0.004       3.8     115     167 ..     231     285 ..     221     302 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 d++viGgG+ G  aAi+ a+ g +V+ +ek  + g
   EGE27795.1  6 DLVVIGGGPGGYEAAIRGAQLGFSVACIEKRVHKG 40
                 89***************************986655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
                  E.TTEEEEESEEEE---- CS
  HI0933_like 147 tkseeeleadklvlAtGG 164
                    +e++++a++++lA G+
   EGE27795.1 140 G-DESTITAKYVILAAGS 156
                  3.78899********986 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.061
                  EE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   5 viGgGaAGlmaAisaakrgkrVlllekakkl 35 
                  viG+G  Gl      ++ g++V+++e+++++
   EGE27795.1 189 VIGAGVIGLELGSVWRRLGAEVVVYEAMPEF 219
                  9**************************9987 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.004
                  HHHHHHHHT-EEE-S--EEEEECETTE.EEEEE....TTEEEEESEEEE----SS- CS
  HI0933_like 115 llkelkeagvklrletevksvekeedgkfrvktk...seeeleadklvlAtGGlSi 167
                    k lk++g ++r++t+v+++e ++++ + v+t+   ++++ + dkl++ +G  ++
   EGE27795.1 231 AAKLLKKQGLDIRVDTKVTGAEVKDGQ-VIVTTDvkgETQTDTFDKLIVCVGRRAY 285
                  567799***************997777.7777742234445567999**9998776 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.011        10       1      33 [.       7      39 ..       7      94 .. 0.74
   2 !   10.1   0.0   0.00092      0.87       2      55 ..     188     265 ..     187     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.011
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGG CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreef 33
                lv++G+g+ + + a  +a+lgf+v ++++r + 
  EGE27795.1  7 LVVIGGGPGGYEAAIRGAQLGFSVACIEKRVHK 39
                79**************************99853 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00092
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG.......-GGG-TT-SE........................-EEEE--S-HH CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa.......tkerfpeade........................tavvvlthdhk 55 
                  ++Gag ++ +l ++ ++lg +v+v+++ +ef        +       +e                        +  v++t d k
  EGE27795.1 188 GVIGAGVIGLELGSVWRRLGAEVVVYEAMPEFLavadkdiS-------KEaakllkkqgldirvdtkvtgaevkDGQVIVTTDVK 265
                 699***************************99844433331.......2233455555666666666666666666666666555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.81   7.6e+02      39      71 ..       7      39 ..       3      50 .. 0.86
   2 !   15.4   0.0   9.6e-06    0.0091      37      70 ..     185     218 ..     169     239 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.81
                  EEEES-SHHHHHHHHHHHHTT-EEEEESSSHHH CS
  2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviaydrskkk 71
                  + +iG G  G ++a r +++g+ v +++++ +k
    EGE27795.1  7 LVVIGGGPGGYEAAIRGAQLGFSVACIEKRVHK 39
                  689*********************999888765 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 9.6e-06
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   k++G+iG+G IG ++  + + +g++v++y+  ++
    EGE27795.1 185 KRLGVIGAGVIGLELGSVWRRLGAEVVVYEAMPE 218
                   89***************************99876 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.3    0.0007      0.66       3      34 ..       6      37 ..       4      51 .. 0.91
   2 ?    2.7   0.0     0.065        61     134     163 ..     125     155 ..     120     171 .. 0.81
   3 ?    5.2   0.3     0.011        10       6      35 ..     189     218 ..     186     245 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0007
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   d +++G+Gp G  +a   ++ G +v ++ekr 
     EGE27795.1  6 DLVVIGGGPGGYEAAIRGAQLGFSVACIEKRV 37
                   678***************************86 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.065
                    CCCCCCCEEE.ECCTTEEEEEEEEEEEE--G CS
  FAD_binding_3 134 deegvtaevr.dketgeeetvrakYlvGaDG 163
                    d++g + +v+    +g e+t++akY++ a G
     EGE27795.1 125 DGKGAEKQVKfTPLEGDESTITAKYVILAAG 155
                    5555566666456789999********8877 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.011
                    EE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3   6 IVGaGpaGlmlallLseaGvrvvlvekrst 35 
                    ++GaG  Gl l+++ ++ G +vv+ e + +
     EGE27795.1 189 VIGAGVIGLELGSVWRRLGAEVVVYEAMPE 218
                    9**********************9998766 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2     0.013        13       1      30 [.       6      37 ..       6      80 .. 0.84
   2 ?    3.7   0.0     0.041        38     148     225 ..     101     171 ..      97     180 .. 0.64
   3 ?    0.5   2.3      0.39   3.7e+02       4      28 ..     189     215 ..     186     224 .. 0.77
   4 !   12.2   0.1    0.0001     0.096     150     206 ..     229     289 ..     220     321 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.013
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgd 30
                d+v+iGGG  G  +A   a+ g  V+ +ek+ 
  EGE27795.1  6 DLVVIGGGPGGYEAAIRGAQLGfsVACIEKRV 37
                89****************************93 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.041
                 HHHHHHHHHHHTT-EEEES..ECEEEEEEEETCEEEEE.....EECTEEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEE CS
         DAO 148 ltaalaraaealGveileg..tevtgleeedgkvwgve.....rttpgendaadavVnaaGawsdllgllkeldlpispvrgqvl 225
                 lt+++a  ++ +Gv+ l+g  t v g     g  ++v+        ++++ +a++v++aaG     +    ++++p+  + g+++
  EGE27795.1 101 LTQGVAGLLKGNGVDWLQGwgTLVDGK----GAEKQVKftpleG--DESTITAKYVILAAG-----S---VPIEIPVAKTDGEYI 171
                 799999999999999999965555553....1222332333321..122224688******.....3...334457777777766 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.39
                 EECTSHHHHHHHHHHHHTT..EEEEES CS
         DAO   4 iiGGGiiGlstAyeLarrg..Vtllek 28 
                 +iG+G+iGl       r g  V+++e+
  EGE27795.1 189 VIGAGVIGLELGSVWRRLGaeVVVYEA 215
                 9*******9777777444777888887 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.0001
                 HHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE..EEEEEEEE--G..GGHH.H CS
         DAO 150 aalaraaealGveilegtevtgleeedgkvwgverttp.gen..daadavVnaaG..awsd.l 206
                 +  a+ ++++G +i+  t+vtg e +dg+v     t   ge+  d++d+++++ G  a+s  l
  EGE27795.1 229 KEAAKLLKKQGLDIRVDTKVTGAEVKDGQVIVT--TDVkGETqtDTFDKLIVCVGrrAYSEkL 289
                 5678999****************9999775444..22235443447799******55555533 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   2.9e-05     0.028      18      61 ..       5      47 ..       2      63 .. 0.85
   2 ?   -2.4   0.2       2.4   2.3e+03      69      69 ..     227     227 ..     187     267 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.9e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGG 61
                 D+v++G+G+ G  aa   a+  ++ va +e++v  G  a +G 
  EGE27795.1  5 YDLVVIGGGPGGYEAAIRGAQL-GFSVACIEKRVHKGEPALGGT 47
                59**************999998.***********9987665553 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
                 E CS
        Thi4  69 v 69 
                 +
  EGE27795.1 227 I 227
                 2 PP

>> KH_7  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011       0.1      28      67 ..     207     248 ..     206     249 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
        KH_7  28 GPelViYtknpklfa.engdlirklAkelrkR.iviRpDpsv 67 
                 G e+V+Y   p+++a  ++d+ ++ Ak l+k+ + iR D +v
  EGE27795.1 207 GAEVVVYEAMPEFLAvADKDISKEAAKLLKKQgLDIRVDTKV 248
                 89***********998999***********986899999886 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00024      0.23       1      50 [.     186     231 ..     186     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00024
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EE CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkv 50 
                    ++g+iGaG +g  l s + + g    e+vv  + +pe ++ + ++++ ++
     EGE27795.1 186 RLGVIGAGVIGLELGSVWRRLG---AEVVVY-EAMPEFLAVADKDISKEA 231
                    68********************...****55.*****9999998888444 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2   0.00087      0.82       1      31 [.       6      34 ..       6      41 .. 0.95
   2 ?   -3.6   0.0       4.6   4.3e+03     122     140 ..     136     155 ..     108     158 .. 0.77
   3 ?    0.7   0.1      0.23   2.2e+02       4      38 ..     189     221 ..     187     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00087
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlie 31
                   D+vviG+Gp g   A r   a+ g +v +ie
     EGE27795.1  6 DLVVIGGGPGGYEAAIRG--AQLGFSVACIE 34
                   9*****************..**********8 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.6
  Lycopene_cycl 122 vvleggr.kirarlvvdarg 140
                      leg++ +i a+ v+ a g
     EGE27795.1 136 TPLEGDEsTITAKYVILAAG 155
                    45788888999999999988 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.23
  Lycopene_cycl   4 viGaGpAglslAarlteakpglkvvlieaspsllf 38 
                    viGaG  gl l       + g +vv+ ea p+ l 
     EGE27795.1 189 VIGAGVIGLELGSVW--RRLGAEVVVYEAMPEFLA 221
                    8**********9988..99*******999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3357.00
//
Query:       EGE27796.1  [L=256]
Description: hypothetical protein EA1_00355 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0042   17.1   0.0       0.01   15.9   0.0    1.6  1  MALT1_Ig        MALT1 Ig-like domain
     0.0077   17.2   0.2      0.018   16.0   0.2    1.7  1  DUF4834         Domain of unknown function (DUF4834)
  ------ inclusion threshold ------
      0.046   13.9   0.3      0.046   13.9   0.3    1.8  2  UPF0239         Uncharacterised protein family (UPF0239)
       0.07   13.6   1.4       0.18   12.2   0.2    2.1  2  G0-G1_switch_2  G0/G1 switch protein 2
      0.096   11.5   0.6       0.13   11.1   0.6    1.1  1  O-antigen_lig   O-antigen ligase like membrane protein
       0.45   10.7   1.4       0.71   10.1   1.4    1.3  1  YbgT_YccB       Membrane bound YbgT-like protein
       0.62   10.6   3.3          4    8.0   1.9    2.3  2  DUF4189         Domain of unknown function (DUF4189)
        5.8    7.6   6.6         44    4.8   6.6    2.3  1  OAD_gamma       Oxaloacetate decarboxylase, gamma chain


Domain annotation for each model (and alignments):
>> MALT1_Ig  MALT1 Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.6e-06      0.01      24      74 ..      13      63 ..       7      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.6e-06
    MALT1_Ig 24 AefsNvlviyttikekpeeiqdcsatltdfpedldvddklsnketseeads 74
                A f  ++v+ +ti+e+pe+ ++ +++ td+++  +  ++ +n++t +e++ 
  EGE27796.1 13 AVFFGIMVVLATIIETPEQETKKEVEQTDEQKTEQAPQQATNQKTKQETGP 63
                67889**************************999**************985 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   8.1e-06     0.018       8      74 ..       7      70 ..       2      95 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.1e-06
     DUF4834  8 lifiiailviglsi.lsvilrtvfglgsrkkssksaqkqfgnst.nsnqqksqsrsetkeegeiieeer 74
                 + ii+ +++g+++ l++i++t     ++++++ +++++ +++t + +qq+++++++++++ +++ + +
  EGE27796.1  7 RLGIIFAVFFGIMVvLATIIETP----EQETKK-EVEQTDEQKTeQAPQQATNQKTKQETGPKAEAKAN 70
                45566666666655044566666....333333.33333333330333334433333333333333332 PP

>> UPF0239  Uncharacterised protein family (UPF0239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3     2e-05     0.046      22      78 ..       7      60 ..       2      70 .. 0.66
   2 ?   -3.4   0.2         5   1.1e+04      58      66 ..     175     178 ..     163     197 .. 0.43

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-05
     UPF0239 22 rYGLflGAifqlvCilAiillpsskseesveeeaesseeksseqvkkpkaaaaqrlk 78
                r G+ +   f ++ +lA i +++ ++e   ++e e+++e+++eq  ++ ++ +++++
  EGE27796.1  7 RLGIIFAVFFGIMVVLATI-IETPEQET--KKEVEQTDEQKTEQAPQQATNQKTKQE 60
                678888888999999**99.77777666..477777777666665555444333333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5
     UPF0239  58 seeksseqv 66 
                 se+      
  EGE27796.1 175 SEQ-----A 178
                 222.....2 PP

>> G0-G1_switch_2  G0/G1 switch protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   8.2e-05      0.18      29      87 ..       8      66 ..       2      87 .. 0.57
   2 ?   -0.4   0.1       0.7   1.6e+03      50      86 ..     161     196 ..     154     212 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.2e-05
  G0-G1_switch_2 29 lGsvLal.lGvviglvetvcspFssesrlreeeeavaklqaarekeaeekeeelvlekek 87
                    lG ++a+ +G+++ l  ++ +p  ++++  e+++++ k+++a ++++++k+++    k+ 
      EGE27796.1  8 LGIIFAVfFGIMVVLATIIETPEQETKKEVEQTDEQ-KTEQAPQQATNQKTKQETGPKAE 66
                    788888526888888888888866666444433333.33333333333333333233332 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.7
  G0-G1_switch_2  50 Fssesrlreeeeavaklqaarekeaeekeeelvleke 86 
                     F s+++l++e +++ ++ a + k a ++  e+v +++
      EGE27796.1 161 FVSDKDLNKELKSQSEQ-AISDKVALSECREMVKRDA 196
                     55555555554444444.3334444444444444444 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   5.6e-05      0.13     245     332 ..       6     110 ..       1     130 [. 0.52

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.6e-05
  O-antigen_lig 245 kklllaiillvligillaiypy......spiyrrkelkekeieiksekkeeeeikne.............ikenykseglkeavleqyeyandkqf 321
                    k   l+ii+ v++gi++++  +      ++ ++ ++++e+++e+  +++++++ k+e              ++   s+ + e  + +y+++n ++ 
     EGE27796.1   6 KR--LGIIFAVFFGIMVVLATIietpeqETKKEVEQTDEQKTEQAPQQATNQKTKQEtgpkaeakanngpKAKPVVSKPISEHAFTEYDKENYPKV 99 
                    33..35555555555553333321123333333444444444444444466666666566665554444433333333344888888888888888 PP

  O-antigen_lig 322 sqellkeeves 332
                    +q+  ++ +e 
     EGE27796.1 100 YQKWGSDWIER 110
                    77766655555 PP

>> YbgT_YccB  Membrane bound YbgT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.4   0.00032      0.71       8      22 ..       8      22 ..       7      24 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00032
   YbgT_YccB  8 LGvlLAvlfgilnal 22
                LG+ +Av fgi+++l
  EGE27796.1  8 LGIIFAVFFGIMVVL 22
                9***********998 PP

>> DUF4189  Domain of unknown function (DUF4189)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.9    0.0018         4      14      91 ..      50     130 ..      30     134 .. 0.86
   2 ?    1.5   0.0       0.2   4.5e+02      19      42 ..     174     197 ..     161     228 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0018
     DUF4189  14 gasvnyssreeAeaaAlkeCakkggsdCkvvvsfknacgAvaeskkka......aagvgsgasleeaeeaAlkkCkkkggseCk 91 
                   ++n+++++e   +A ++   ++g++ k vvs      A+ e++k++      ++g+ + ++le+ e+aA +k  + ++++C 
  EGE27796.1  50 QQATNQKTKQETGPKAEAKA--NNGPKAKPVVSKPISEHAFTEYDKENypkvyqKWGSDWIERLEAHERAAADKIAN-SDNACD 130
                 46788888888888888888..9999*******999999**99999989****9**********9999999999888.888886 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.2
     DUF4189  19 yssreeAeaaAlkeCakkggsdCk 42 
                 +s+++  ++ Al+eC++  ++d k
  EGE27796.1 174 QSEQAISDKVALSECREMVKRDAK 197
                 345555667777777665555555 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.6     0.019        44      12      58 ..       9      58 ..       8      96 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.019
   OAD_gamma 12 gvVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaaa...e 58
                g++F+v + +++v+  +   +  ++kk+ ++ ++++ ++a+++a++   +
  EGE27796.1  9 GIIFAVFFGIMVVLATIIETPEQETKKEVEQTDEQKTEQAPQQATNqktK 58
                89999999999999999999999999999999888888888877644330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2547  (0.14206); expected 358.6 (0.02)
Passed bias filter:                     1138  (0.0634726); expected 358.6 (0.02)
Passed Vit filter:                       142  (0.00792013); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 1910.51
//
Query:       EGE27797.1  [L=913]
Description: TonB-dependent receptor [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-36  126.5  16.9    5.3e-36  125.5  16.9    1.4  1  TonB_dep_Rec  TonB dependent receptor
    4.8e-07   30.3   0.4    1.1e-06   29.1   0.4    1.7  1  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5  16.9   5.9e-40   5.3e-36      76     469 ..     365     911 ..     327     912 .. 0.67

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 5.9e-40
                   EEEEEEEEEEEEEEEEEEE.EEEE......EEEEEEEE......CEEEEEEEEEEEEEEEEEEE.................EE.....EEEEEEEEE CS
  TonB_dep_Rec  76 lraglnYsstdgdsdynns.glgg......grsynrdn......dyyglgnvlaaeldlngdlw.................fG.....snladgldy 137
                   ++++l+Y+++++d++ +++  +++      + ++   +      ++  + ++ +++l+l ++ +                 +G     s +++ +++
    EGE27797.1 365 IKLSLTYADYYHDEKDAGNeQDPNnhkpseR-DT---TvdkghaSSIFTKKGVNGRLELYHTPTkrlsgvlgigyqtqksaAGeaylpSYFQSEAEW 457
                   3333444433333333333222223344442.22...122244422225566666666655554555666554444455666677777777777888 PP

                   EEEEEEECCBEESCCTCCSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTC................SSSS.............EEECCCE CS
  TonB_dep_Rec 138 rklsddgydaydplnpsgdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvf................gkdlrag..........afsrsgs 208
                   +  ++ ++++++ + p+    ++ +++s+g+++  ++kl ++ t+ ++ R+++ ++                 +                  +++++
    EGE27797.1 458 Q--KA-QSQNINQYRPY-LLVPN-TNKSLGIFGLEQLKL-NQMTFKVAMRHERQKTPieydqhlldhalqyflS-----KaqlkapdhpdLTTYKQH 543
                   8..55.66888888888.88888.9**************.**********998888855555555566555551.....03333345555456667* PP

                   EEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEEECSTT---EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEESSSSCST CS
  TonB_dep_Rec 209 afsPsvglryrptddlslrasysrgfraPslgelyaggsngaggalsngnpdLkPEtsknyelGlkldddrlnltlayFridiknfittdpdgpslg 305
                   a+s++ ++ +++t++++l  +ys   r Ps  ely++g++ a++++  gn++L  E+s+nyelG+  + d+ + +++ ++++++n+i++ + +  ++
    EGE27797.1 544 ATSYAGSALWDITPNHRLSLTYSHNERIPSPMELYYQGGHLATSSFEHGNKNLVKEKSDNYELGFMHTADKVSYKASTYYSNFDNYIFNETIAKEGN 640
                   ******************************************************************999***********************99999 PP

                   TTCSEEEEEEEEEEEEEEEEEEEEEEETT.....EE.........EEEEEEEEEE...............EEECECEEECTTTTS............ CS
  TonB_dep_Rec 306 glgdfqyqNvgkarikGvElelsyrltpg.....Wg.........lglsgggytY...............ydagddsdaddggnp............ 361
                    +   + +N  +a+ +GvE +l+y+ +++     +g         l+   g++ Y               +        dd+g++            
    EGE27797.1 641 LY--IRRYNQTTAKFYGVEGSLTYQPNANhsvmfFGdmvqgkigaLSDIKGKLVYagrkwvyfdddikdmT-------VDDNGDYdadggltcalkt 728
                   66..666677888*********9994444344443355555555533333334444444444433333320.......2222222333444566666 PP

                   .........................................STTEESEEEEE.EEEE..ECSEEEEEEEESEEEEEEECCSS............... CS
  TonB_dep_Rec 362 .........................................lpnvPkhtanl.gltY..kfpaggWgaglllagarYvavgg............... 399
                                                             p+vP+ ++++ +  Y  ++    W+a++    +++v +++               
    EGE27797.1 729 peqwgqindnndcsttinvykngtttsgeedydrlarnptyAPRVPPSRLGIrWQGYfgDH----WSANA---EFNHVFAQNkvatstvaikpqfkq 818
                   66666666666666666666666667777777776666666888*******9888884444....88444...445544444233333333344444 PP

                   ..........EEEEECECCEE.....................EE--EEEEEEEEEEEES...SSE..EEEEEEESTTETCSCEEESTTTTTCCEB-- CS
  TonB_dep_Rec 400 ..........rrygdaantfr.....................rvpgYtlldlslgYklp...knl..tlslgvnNLfdkryyassgyyglggypgpg 460
                                       r                     +++gY ll++ l Y  +   +n+  tls+ +nNL++ +  +  +++ l ++p++g
    EGE27797.1 819 pegcqrheshC---------RisdygsdnnplmmqpryitenKTAGYNLLNVGLDY--NnayRNIdyTLSIRANNLLN-EQIYIHNSF-LPFVPQMG 902
                   44444444441.........0333333333456777788999**************..744633377***********.677888888.9******* PP

                   SEEEEEEEE CS
  TonB_dep_Rec 461 Rtfrlglry 469
                   R+++lgl+ 
    EGE27797.1 903 RNLTLGLTA 911
                   *******97 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.4   1.3e-10   1.1e-06      11     108 .]      60     155 ..      50     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.3e-10
                 EEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESC.CCCSCTCGCSSBGGGEEEEEEEESSCHCTTSSTGSSEE CS
        Plug  11 vvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpian.ggsgagdlssidpedierievlkGpasalyGsdaigGv 108
                 ++++++++ + + +l++al+g  g++  s+  ggg+s  ++RG ++ r ++l +G  + + ++ + + +   d+ + +++e+++G+ + lyG  +++Gv
  EGE27797.1  60 TLSKDKLKYR-SATLGNALSGELGIH--SNPFGGGSSAPVVRGQEGVRLKILQNGTDVIDvSSISPDHVVATDTLLASKVELVRGADTLLYGLASPAGV 155
                 4677777555.999************..9****************************99977777788889999************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 7058.29
//
Query:       EGE27798.1  [L=31]
Description: hypothetical protein EA1_00365 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       110  (0.00613531); expected 358.6 (0.02)
Passed bias filter:                       90  (0.0050198); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 248.42
//
Query:       EGE27799.1  [L=405]
Description: hypothetical protein EA1_00370 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00012   21.6   1.6      0.029   13.8   0.2    3.4  3  Porin_3      Eukaryotic porin
  ------ inclusion threshold ------
      0.072   12.9   4.4       0.75    9.6   0.2    2.8  2  OEP          Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> Porin_3  Eukaryotic porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.01        94     241     261 ..      26      46 ..      24      53 .. 0.91
   2 !    2.5   0.1     0.009        81     181     212 ..     209     240 ..     159     244 .. 0.78
   3 !   13.8   0.2   3.2e-06     0.029     151     211 ..     244     303 ..     242     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.01
                 EEEEEEEECTTEEEEEEEEEE CS
     Porin_3 241 gllleqkLrpgvtltlsaelD 261
                 +++l ++Lr+g+++++s++++
  EGE27799.1  26 AVYLDRNLRDGLKFGISGSVN 46 
                 67999**************98 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.009
                 EETTTEEEEEEEEECCTTEEEEEEEEEETTEE CS
     Porin_3 181 lnnggaltasyyqkvsekvevgaeltlnassq 212
                  +++++l+asy + +s++  + + ++++ s++
  EGE27799.1 209 IQKAQGLSASYSHPISPNQTLSVGTAYSKSQR 240
                 378999**********8887777777776655 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 3.2e-06
                 EEEECTTTCCEEEEEEEEEEECSEEEEEEEEETTTEEEEEEEEECCTTEEEEEEEEEETTE CS
     Porin_3 151 avydtasgkltkyaaalsyaardwiaslqllnnggaltasyyqkvsekvevgaeltlnass 211
                 ++ dta ++ t+ +++lsy ++dw++s+++++++++l++++   ++ k ++g+++++++++
  EGE27799.1 244 FFSDTAYNNKTASTVGLSYRQGDWSISGNVGQAKENLHGAIIDDITTK-AFGTKISYKVTP 303
                 5678999999*******************************9999766.688888877665 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.4    0.0045        41      39      95 ..     228     283 ..     209     286 .. 0.91
   2 ?    9.6   0.2   8.3e-05      0.75      37      87 ..     302     377 ..     295     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0045
         OEP  39 tlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaa 95 
                 tls++++y++++   +++ d+ +++ t+ +++ls+   d ++++ +v +ak +l+ a
  EGE27799.1 228 TLSVGTAYSKSQRHKDFFSDTAYNNKTASTVGLSYRQGD-WSISGNVGQAKENLHGA 283
                 899**********************99999999999889.999****9999998876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 8.3e-05
         OEP  37 lPtlslsgsygyegngsegggddggtgtt..........................svgltlsqplfdggkrrarvka 87 
                  P++s+sg+yg+ + + + + ++++ + +                          ++gl++s+ ++ g +++a++++
  EGE27799.1 302 TPRISVSGTYGQKTTDKN-TKPNKRLDIPniiaqrggnissrvheswffdktkqkTYGLSASYYIYGGISISASMNQ 377
                 599*********998865.55777777779************************************99999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2891.33
//
Query:       EGE27800.1  [L=410]
Description: hypothetical protein EA1_00375 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0001   22.4   3.2     0.0001   22.4   3.2    2.3  2  Phenol_MetA_deg  Putative MetA-pathway of phenol degradation
  ------ inclusion threshold ------
        3.9    7.6  20.6      0.056   13.6   2.2    3.4  3  OMP_b-brl        Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> Phenol_MetA_deg  Putative MetA-pathway of phenol degradation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.4     0.035   3.1e+02     129     183 ..      68     122 ..      25     137 .. 0.54
   2 !   22.4   3.2   1.1e-08    0.0001      48     236 ..     118     324 ..     109     328 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.035
  Phenol_MetA_deg 129 adgwelsanlgydfngenddtdyqsgqefh...ldlalgyaftpgkwsvglvgyyytq 183
                      ++++e+ +++ y+  ++    + + gq+     +++ ++ ++ +g+   g+ g++y +
       EGE27800.1  68 NNDYEAITKGAYEQRSDR---RVRLGQDTGaswTEFRASRKLRDGWRVSGAIGFGYYD 122
                      333344444444444444...3333333322224666777776664444666665554 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.1e-08
  Phenol_MetA_deg  48 lgelsvklegglsgas.sdsrsGlgdltlgpkil......................aWedkggnpavalylgvnlP.tGdydknrlnlGsnyws 117
                      +g ++  ++ +l+ a+   +   lg l lg ++l                         d + + ++ +  +  lP + d  k+++  G+   +
       EGE27800.1 118 FGYYDRGTGMYLNSANmAFDKKDLGSLSLGRQYLhtgyvtrtntytpletfgensiR-LDYTAIKGLHASGYYSLPaSSDVRKKKN--GQEVEG 208
                      555555555555555555666666666666666666666666666666666555432.3556666666777777776677777777..888888 PP

  Phenol_MetA_deg 118 fsptvaltyqladgwelsanlgydfngenddtdyqsgqefh.....ldlalgyaftpgkwsvglvgyyytqltddkgngadgnrgrvfalGpgl 206
                      f  +v + + l+d  ++ + lgy+    n +t+ + ++ ++     + ++++y+  ++ + ++  g+   q+     ng+  ++++  ++G+ +
       EGE27800.1 209 FGASVSYLHPLDDHQTVRVALGYSDSRQNAKTTGRDSNFYAtksqgAAASVEYRN-NKLLLAADIGQKNEQI-----NGTVTDKSKGNYMGVKV 296
                      8888888888*******************88888888888888866666666655.5655555556677777.....9999999********** PP

  Phenol_MetA_deg 207 aylfspnlqldasagkglevaarnrfegag 236
                      +y ++p+l  +a++gk  +va+r    ga+
       EGE27800.1 297 GYEITPRLTMTAGFGK--KVAERTQKSGAA 324
                      ****************..****99888776 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   4.4      0.34     3e+03      45     113 ..      43     122 ..      25     162 .. 0.49
   2 ?   13.2   3.8   7.9e-06     0.071      37     152 ..     196     310 ..     170     312 .. 0.63
   3 ?   13.6   2.2   6.2e-06     0.056      25     132 ..     269     402 ..     254     410 .] 0.64

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.34
   OMP_b-brl  45 gfgvgagyefndnvgvegglsysgdkdysgs.........gktdikinlls............vpvnagyafnlsdsvlpyggaGlgytk 113
                  ++  +  + +++  ++++ ++++ +++               d                     ++a  +++  d +++ g +G+gy++
  EGE27800.1  43 EINTYGQKNSQKYTYLYPETGWASVNNDYEAitkgayeqrS--D------RrvrlgqdtgaswTEFRASRKLR--DGWRVSGAIGFGYYD 122
                 33333334444455555555553332222222322222110..1......12121212222222222333322..446666666666543 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 7.9e-06
   OMP_b-brl  37 gv.gsds.....gfgfgvgagyefndn..vgvegglsysgdkdysgsgktdikinlls...vpvnagyafnlsdsvlpyggaGlgytkvevdvsgngas 124
                 +v ++++     gfg  v++ + ++d+  v+v +g+s s+++ ++++   d  +n+++    +++a + +++ +  ++ + a +g+ +++++  g+   
  EGE27800.1 196 DVrKKKNgqeveGFGASVSYLHPLDDHqtVRVALGYSDSRQNAKTTG--RD--SNFYAtksQGAAASVEYRN-N--KLLLAADIGQKNEQIN--GT--- 282
                 22244444444567777777778899745777777777444444442..13..3333333466666666663.3..4677777777545544..44... PP

   OMP_b-brl 125 dsdtdfglglgaGveyaladnwslkaeY 152
                  +d+  g + g+ v+y++++++++ a++
  EGE27800.1 283 VTDKSKGNYMGVKVGYEITPRLTMTAGF 310
                 8999999999***********9999886 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 6.2e-06
   OMP_b-brl  25 ggglglskvkvdgv..gsdsgfgfgvgagyefndnvgvegglsysgdkdysgs............................gktdikinlls....... 86 
                  +++g+ + + +g+  ++++g+ +gv++gye+++++ + +g+++  ++ +++s                                      +       
  EGE27800.1 269 AADIGQKNEQINGTvtDKSKGNYMGVKVGYEITPRLTMTAGFGKKVAERTQKSgaalihayskdlcvadandschnfvqayE---------Talfdkid 358
                 555555555555553355557788********************99988888867777777777777765555444444442.........04444444 PP

   OMP_b-brl  87 ...vpvnagyafnlsdsvlpyggaGlgytkvevdvsgngasdsdtdfgl 132
                     +v+a y+++  ++v++yg +   +  +++ ++++   ++  ++g+
  EGE27800.1 359 skrSYVRADYYLR--ENVRLYGRIDDEKITNQLGNKDF---SKLHNTGY 402
                 4447777888777..66899998888887777777666...33333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3001.56
//
Query:       EGE27801.1  [L=895]
Description: prolyl endopeptidase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-51  173.5   2.1    8.2e-51  172.5   2.1    1.5  1  Peptidase_S9    Prolyl oligopeptidase family
    2.4e-19   69.4  14.1      4e-18   65.4   8.2    3.2  2  Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propel
  ------ inclusion threshold ------
      0.088   12.1   0.1       0.21   10.8   0.1    1.5  1  Hydrolase_4     Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.5   2.1   1.4e-54   8.2e-51       5     211 ..     637     847 ..     632     848 .. 0.94

  Alignments for each domain:
  == domain 1  score: 172.5 bits;  conditional E-value: 1.4e-54
                   HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---C CS
  Peptidase_S9   5 selqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdv 101
                   s++++l + G v + a irG+++yG+++h++g+  ++ n fdDf aaa++la+ gy+ds++lai G+S+GG+l+ga +  +p++F++a+ +++v+d+
    EGE27801.1 637 SKAAWL-EHGGVWATAFIRGGSEYGHTWHKDGRLLNKMNVFDDFAAAADYLAQSGYADSNHLAISGASNGGLLVGASMVLHPEKFRVAIPAAGVLDM 732
                   778899.****************************************************************************************** PP

                   CCHHCSTTSTHH.HCCCC--TTTCHHHHHHHHHH-CGGG--...---EEEEEEETT-SSS-THHHHHHHHHHH--S-..S.EEEEEETTS-SSTTSS CS
  Peptidase_S9 102 lrydsdtdllte.eymewgnpeeneegykelspyspldnvk...aypplLlihGlaDdrvppaealklvaaLqkkgk..n.vlllifpdegHgvgkp 191
                   lry  +    t+ +  e+g p ++ ++yk l++ysp++nvk    yp++L++++  Ddrv+p++++k+vaaLq+k++  n + l    + gH++++ 
    EGE27801.1 733 LRYNDNF--HTQyWAGEYGLPYDSVAQYKLLKSYSPYHNVKagvCYPSTLVMTSKRDDRVTPSHSYKFVAALQDKQVcaNpTFLYAAEQFGHWANTY 827
                   ***9994..666899**********************************************************66542245889999999******* PP

                   HHHHHHHHHHHHHHHHHCT- CS
  Peptidase_S9 192 rakveelarllaFlkealgk 211
                   + +++ +  +++F+++ +++
    EGE27801.1 828 QEQKNDYSLFTSFALNEMNI 847
                   **************999875 PP

>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.3    0.0012       6.9       7      32 ..      96     121 ..      91     127 .. 0.79
   2 !   65.4   8.2   6.7e-22     4e-18      28     407 ..     164     568 ..     160     573 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0012
                     TT.EEEETTEEEE-TTGGGGSTTSHH CS
  Peptidase_S9_N   7 esvvdelhgdkvsDpYrWLeDddspe 32 
                     +  v  ++g+k++D++rWLe  d+ +
      EGE27801.1  96 DDGVSRYFGEKIVDKFRWLENVDDMN 121
                     445889**************876654 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 6.7e-22
                     TTSHHHHHHHHHHHHHHHHHHCTST.CHHHHHHHHHHHT-S-EE---EEETTEEEEEEE-SS-SS-EEEEEC.......STS-TTS-EEEEE-GG CS
  Peptidase_S9_N  28 ddspetkayleaenkyteevlaqlkelrekikeeitklikeddisapfrkgkyyyysrneggknqsvlyrqd.......alskegeeeevlLDpN 115
                     ++s+e++++++a+n++t+++++  + + e++k++i +l++++            y+  n+ g     lyr +        +  +g ++++l+++ 
      EGE27801.1 164 KQSSEVNDWVNAQNEVTNQYFDANP-IYEQVKNNINALMSYRY----------SYRKENKDGVGSLELYRHEdgyirleLTDTDG-NKRTLFNER 246
                     5899*********************.***********999853..........33333333333333333322222222344578.********* PP

                     GGSTTS-.EEEE..EEEE-TTSSEEEEEEEETTSSEEE.....EEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEESS-SSS-TSTSB-S- CS
  Peptidase_S9_N 116 tlsedgtfvalg..efavsedgkllAyslsksGsdwyt.....irvkdietgedlpdeledvkfsgivWaadekgffYtrydkedersdtdtnln 203
                     +lsedg+ ++l   ++ vs++g+++Ay +  + +d +t     ++v+di+tg+   + ++++  ++i W++d k f+Y++               
      EGE27801.1 247 ELSEDGN-TVLPwpDIYVSDKGSYVAYVTAPGNNDTDTrgrtdLHVIDIKTGKAAIEPIQNADNNSIIWLDD-KSFLYIQGS------------- 326
                     ******9.888622666**********9988888865444444*****************************.******977............. PP

                     BEEEEEETTS-GGG-.EEEES-TTGTTBEEEEEE-TT..SSEEEEEEESSSS........--EEEEEEGGGTSS--EEEEESSSSS.-EEEEEE. CS
  Peptidase_S9_N 204 qkvyrhkLGtaqseD.elvfeeeeepkwllgaersed..gkylfissasgtd........tnelyvldlekeskkvlklvdnrfda.eysvehn. 285
                      ++ rh++G+++  D + v  +e +    + +  s+d   +yl+i+++++          tn++y +  ek  ++++   +++  a  +s++h  
      EGE27801.1 327 -QIKRHEVGSKKWVDpIEVTWGEIDGAGPTDMWYSDDetRRYLVIEAYKKAPtsfikdtkTNKVYRIHSEKFFNDFFYHAPDYTHApLASLVHFd 420
                     .5666777777666532233323333333344444441157888888877655566666699999999999888999999999999999999984 PP

                     .ETTEEEEEE-TT-TT-EEEEEETTSSSGGGEEEEE--.SSCEEEEEEE..CTTEEEEEEEETTEEEEEEEETTTS-.................. CS
  Peptidase_S9_N 286 .egdrfliltndgapnfrlvsvdlndpspsewkelvperekvvleeitv..fknylvvsyrkdvlsrvqvvdlkngkv................. 360
                      ++ + ++ ++++  ++ +++++ln+p++ e  + +p + + +le i     ++++++ y+kd+ +++ + d ++gk                  
      EGE27801.1 421 dKTLDVYFISGEKNIKGDIFKMNLNNPKKREIVVAIPDEYDETLEAIYHpeAGGHFLIKYLKDGAHKLILTD-TTGKIvkdltpdipgnaddlts 514
                     3445679999***********************************877522579******************.999989**************** PP

                     .......EEEEEB-SSSSEEEEEE--TT-SEEEEEEEETTCEEEEEEEETTTTC CS
  Peptidase_S9_N 361 .......llfevplpgvgsvssasgekedselfysfsSfltPstiykldlatge 407
                               + +  +  ++ +  ++ ++s + ++f   ++P+t+yk+++++ge
      EGE27801.1 515 yvaeddnKDGDKKAKDKEVADEDDQTPDESYVSFRFNAIIKPRTVYKYSPSKGE 568
                     9999999666666667888999999999999******************99998 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   3.5e-05      0.21      47     189 ..     664     833 ..     634     840 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.5e-05
  Hydrolase_4  47 gkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyllrypdkvaglilsaPalkikakl...................kappll 123
                   k g++ +   + dD+aa+ + +++        l + G S GGl++ + +  +p+k++ +i +a +l++  +                          
   EGE27801.1 664 HKDGRLLNKMNVFDDFAAAADYLAQSGYADsnHLAISGASNGGLLVGASMVLHPEKFRVAIPAAGVLDMLRYNdnfhtqywageyglpydsvA----- 756
                  5566666777899*******9999554444489*******************************99988766666677777776544332220..... PP

  Hydrolase_4 124 klllkllgkllpklqv.............snnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraak 189
                      kll++  p   v             s++ +    s+  ++vaa+++++ + + + +  + ++   +++ +e++++
   EGE27801.1 757 --QYKLLKSYSPYHNVkagvcypstlvmtSKRDDRVTPSHSYKFVAALQDKQVCANPTFLYAAEQFGHWANTYQEQKND 833
                  ..23444444444444555566666668777788888888888888888888887777777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.42
# Mc/sec: 6427.82
//
Query:       EGE27802.1  [L=46]
Description: hypothetical protein EA1_00385 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.06   13.5   0.4       0.07   13.3   0.2    1.4  1  RAI1      RAI1 like PD-(D/E)XK nuclease


Domain annotation for each model (and alignments):
>> RAI1  RAI1 like PD-(D/E)XK nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   3.9e-06      0.07      36      54 ..       6      23 ..       1      32 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.9e-06
                HHHHHHHHHHHHHHHT--E CS
        RAI1 36 ferKllkfWaQSfLlGipr 54
                +++K+l+ Wa SfLlGi++
  EGE27802.1  6 YQKKMLNHWA-SFLLGIKQ 23
                459******9.9*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 402.07
//
Query:       EGE27803.1  [L=77]
Description: hypothetical protein EA1_00390 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-17   63.3   0.5      2e-17   63.1   0.5    1.1  1  DUF2387          Probable metal-binding protein (DUF2387)
     0.0018   18.6   0.8     0.0022   18.3   0.8    1.1  1  Lar_restr_allev  Restriction alleviation protein Lar
  ------ inclusion threshold ------
      0.016   15.2   0.2      0.018   15.1   0.2    1.1  1  Elf1             Transcription elongation factor Elf1 like
      0.019   14.7   1.9      0.047   13.4   1.9    1.8  1  Ribosomal_S27e   Ribosomal protein S27
      0.019   14.9   1.4      0.019   14.9   1.4    1.5  1  Gin              Inhibitor of sigma-G Gin
      0.046   13.7   0.2       0.09   12.8   0.2    1.5  1  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
      0.051   13.5   2.0       0.11   12.3   2.0    1.5  2  eIF-5_eIF-2B     Domain found in IF2B/IF5
      0.098   12.4   0.9        4.6    7.0   0.0    2.2  2  Rubredoxin_2     Rubredoxin metal binding domain
        0.1   12.5   1.4        6.4    6.7   0.2    2.2  2  TFIIS_C          Transcription factor S-II (TFIIS)
       0.13   11.2   0.2       0.13   11.1   0.2    1.0  1  tRNA-synt_1f     tRNA synthetases class I (K)
       0.35   10.6   4.9       0.37   10.6   0.5    2.2  2  RPEL             RPEL repeat


Domain annotation for each model (and alignments):
>> DUF2387  Probable metal-binding protein (DUF2387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.5   1.2e-20     2e-17       1      57 [.       8      65 ..       8      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 1.2e-20
     DUF2387  1 tkkrFiAGavCPrCsemD...kirmweedeveyrECvsCgftdelsekgqsvakelktrv 57
                +k++F+AG+vCP C++ D   +++++e+d +ey+EC++Cg+ ++++++  ++ + ++++ 
  EGE27803.1  8 PKRQFLAGVVCPTCKKIDtivQVQVFEPDYDEYIECIECGHHEHRPTP--DELTTIQEHA 65
                59****************888899*********************999..4444444444 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.8   1.4e-06    0.0022       6      49 ..      18      65 ..      16      71 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-06
  Lar_restr_allev  6 CPfCggravlersqrvvaeigqcvyCadCga....stpwfkiaedeae 49
                     CP C++ +++++ q    ++ ++++C +Cg      tp+  ++ +e++
       EGE27803.1 18 CPTCKKIDTIVQVQVFEPDYDEYIECIECGHhehrPTPDELTTIQEHA 65
                     *******************999*********77664444444444333 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   1.1e-05     0.018      14      56 ..       8      51 ..       2      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
        Elf1 14 kkkklptkFdCpfCnheks.vevkldkkekiaevsCkvCgesfe 56
                 k+++     Cp C++ ++ v+v++ + +   +++C  Cg + +
  EGE27803.1  8 PKRQFLAGVVCPTCKKIDTiVQVQVFEPDYDEYIECIECGHHEH 51
                4455666678*****998879******************98755 PP

>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.9   2.9e-05     0.047       2      40 ..       9      54 ..       8      66 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
                    S--EEE.EE-TTTS-EEE.....EES.S-SS-EEESSSTCEEEEEC CS
  Ribosomal_S27e  2 rskFld.vkCpdCenetv.....vFs.haatvvkCisCgkvLvePt 40
                    + +Fl  v Cp C+++ +     vF+     +++Ci Cg+    Pt
      EGE27803.1  9 KRQFLAgVVCPTCKKIDTivqvqVFEpDYDEYIECIECGHHEHRPT 54
                    556774499******9883333346523579********9877776 PP

>> Gin  Inhibitor of sigma-G Gin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.4   1.1e-05     0.019      18      44 ..      16      44 ..      11      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
                -EEHHHHH..HHHHHS---S---XXXXXX CS
         Gin 18 fICeeCek..kivntevddpkYefykekl 44
                 +C  C k   iv+++v +p+Y+ y+e++
  EGE27803.1 16 VVCPTCKKidTIVQVQVFEPDYDEYIECI 44
                68****97558***************997 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   5.6e-05      0.09      16      46 .]      13      49 ..       8      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
  Zn_Tnp_IS1595 16 pngfvCPhCgsr.kayrikt.....rglfqCkeCrkq 46
                    +g+vCP C++  ++ +++       ++ +C eC+++
     EGE27803.1 13 LAGVVCPTCKKIdTIVQVQVfepdyDEYIECIECGHH 49
                   5799******988888888899999999999999986 PP

>> eIF-5_eIF-2B  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.0   7.1e-05      0.11      88     116 ..      16      48 ..      10      49 .. 0.82
   2 ?    5.0   0.1     0.013        22      85      99 ..      38      52 ..      36      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-05
                   TSTSSSTSTCEEECC....SSSCEEEEESSSTC CS
  eIF-5_eIF-2B  88 VlCkeCkspetelek....eerllvlkCkaCga 116
                   V+C++Ck+ +t +++     +   +++C +Cg+
    EGE27803.1  16 VVCPTCKKIDTIVQVqvfePDYDEYIECIECGH 48 
                   89*********999977742555669*****98 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.013
                  HHHTSTSSSTSTCEE CS
  eIF-5_eIF-2B 85 eeyVlCkeCkspete 99
                  +ey+ C eC+++e +
    EGE27803.1 38 DEYIECIECGHHEHR 52
                  69*******998865 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0028       4.6      17      28 .]      18      29 ..      17      29 .. 0.90
   2 ?    3.9   0.2     0.027        44       2      12 ..      42      52 ..      42      53 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0028
  Rubredoxin_2 17 CpsCgsWntlke 28
                  Cp C+  +t+++
    EGE27803.1 18 CPTCKKIDTIVQ 29
                  *********985 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.027
  Rubredoxin_2  2 vCsqCGfesak 12
                  +C +CG+  ++
    EGE27803.1 42 ECIECGHHEHR 52
                  5999*998876 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.016        26       2      17 ..      17      31 ..      16      36 .. 0.76
   2 ?    6.7   0.2    0.0039       6.4      29      37 ..      41      49 ..      38      51 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.016
     TFIIS_C  2 kCpkCgsreayffqlQ 17
                 Cp C++ +++ +q+Q
  EGE27803.1 17 VCPTCKKIDTI-VQVQ 31
                69999987776.5555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0039
     TFIIS_C 29 ykCtkCghr 37
                ++C++Cgh+
  EGE27803.1 41 IECIECGHH 49
                678888875 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   8.1e-05      0.13     167     210 ..       8      51 ..       1      60 [. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.1e-05
  tRNA-synt_1f 167 eetyspylpvcekcgrvdtt.evvevdaeeeeieY.kceecGeeee 210
                    ++ +   +vc++c+++dt+ +v+ ++   ++ eY +c ecG++e+
    EGE27803.1   8 PKRQFLAGVVCPTCKKIDTIvQVQVFE--PDYDEYiECIECGHHEH 51 
                   455566678999999999861444444..3333332689****986 PP

>> RPEL  RPEL repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.3      0.11   1.7e+02       7      13 ..       5      11 ..       5      11 .. 0.91
   2 ?   10.6   0.5   0.00022      0.37       7      15 ..      50      58 ..      50      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.11
        RPEL  7 shRPtre 13
                s+RP r+
  EGE27803.1  5 SNRPKRQ 11
                89***98 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00022
        RPEL  7 shRPtreEL 15
                +hRPt++EL
  EGE27803.1 50 EHRPTPDEL 58
                5*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 679.28
//
Query:       EGE27804.1  [L=707]
Description: oligopeptidase A [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.9e-131  438.9   0.0   4.4e-131  438.3   0.0    1.3  1  Peptidase_M3    Peptidase family M3
  ------ inclusion threshold ------
      0.064   12.9   0.1       0.12   12.0   0.1    1.3  1  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.3   0.0  4.9e-135  4.4e-131       2     457 ..     243     702 ..     242     703 .. 0.96

  Alignments for each domain:
  == domain 1  score: 438.3 bits;  conditional E-value: 4.9e-135
                   HHC-S-HHHHHHHHHHHCTTTCCSS.....THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3   2 lkespdrelRkeayeashskaaeqrnt...lensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkel 95 
                   ++ +++r lR+e+y a++++a++q ++    +n++++ ++++lr ++Akll  ++y el+l++kma++++++++fl +l+++++p++ +e+++lk+ 
    EGE27804.1 243 MQFADNRTLREELYHAYNTRASDQSPDtteFDNAQIMVDIINLRTQKAKLLDMQDYSELSLATKMANTSDEIEKFLLSLSHAAKPQAYAEYQELKD- 338
                   77899*****************999877789*****************************************************************. PP

                   HHHCCT-SSS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET.TT-EEEEEEEEEE CS
  Peptidase_M3  96 kkkelglegelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVvdeilsegligeiylDl 192
                   ++++lgl+ el+pwDvaY+sek r++k++l   el++yfpl+ vl+Gl+e++++LfG+k+  +++++   whedV +  + d   s +l+g +ylDl
    EGE27804.1 339 YAQSLGLD-ELKPWDVAYVSEKIRQTKFSLTSDELRPYFPLPVVLDGLFEICQRLFGVKISVTQKQNYVAWHEDVLFCVIHDS-DSHELLGGLYLDL 433
                   8899****.********************9999****************************88888899*************9.99999******** PP

                   C--TTS-SS-EEEEEE--B.TTS-B--EEEEEEEEE---BTTS--B--HHHHHHHHHHHHHHHHHHC--BSSGGGSTT.-S-CCCCCHHHHHHHHGG CS
  Peptidase_M3 193 yerkgKrggAasfglvksr.edgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgt.nvpidfvElpSqlmEnll 287
                   ++r gK+ggA+  g+++++    +++lpv +++ Nf++p ++kPsLL++de +tLfHEfGH++H++l+  ++++vsg+  v++d+vElpSq+mEn++
    EGE27804.1 434 FARAGKQGGAWLDGFQSRQvYGDELRLPVGFVIGNFAPPIGDKPSLLSFDEANTLFHEFGHALHHVLTTVDVADVSGIsGVEWDAVELPSQFMENFA 530
                   *****************7653568******************************************************99***************** PP

                   GSHHHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-T..CCGHH....HHHHHHHHHHCTTSCTTBTTSSGGGC-CCC CS
  Peptidase_M3 288 tepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeea..eeeqilkkdlletyaelrkkflglpvapdeasqasFghl 382
                    + e l+++s+h etg a+p+++ + li++kn++++l++lrq+ ++ fd++lH+++  + +qi   d+l++  ++r++++ +  a+ +++   F+h+
    EGE27804.1 531 ITDEGLRLISRHVETGDALPNDKKDALIATKNFQTGLQTLRQMELGLFDLRLHTAKmvNFGQITYADILSVADAVRDEVAVILPASYQRFGNGFSHI 627
                   *****************************************************9872245677669******************************* PP

                   HTSS-TTTTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCSS---SHHHHHHCT CS
  Peptidase_M3 383 fahgYaanYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdplellkkflgrepsadallkalg 457
                   fa+gYa++YYsy +aevl++d+f kf+e++++n++tG+ +r+eiL+rG+s+d+ + + +f+gr+  ++all++ g
    EGE27804.1 628 FAGGYASGYYSYIWAEVLSADAFGKFEEDGIFNPATGRAFRDEILARGSSRDAQDNYVAFRGRKATQEALLRHRG 702
                   ************************************************************************987 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.4e-05      0.12      18      44 ..     480     506 ..     469     509 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
  Peptidase_M50B  18 rpfkllvvffHElGHalaalLtGgrvk 44 
                       f   +++fHE+GHal  +Lt   v 
      EGE27804.1 480 LSFDEANTLFHEFGHALHHVLTTVDVA 506
                     5577789**************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.37
# Mc/sec: 5714.04
//
Query:       EGE27805.1  [L=249]
Description: endonuclease/exonuclease/phosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-15   55.6   0.1      8e-15   55.0   0.1    1.3  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   4.4e-19     8e-15       2     233 .]       8     237 ..       7     237 .. 0.76

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 4.4e-19
                    EEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH................ECSSSTTSSEEEEEECS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   2 twNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsp................tgggggggnggavlsrf 81 
                    ++N+  + ++ +++  r    +d l ++++D+l+LQEv+++ l r+        f  + ++++                  ++ +g++g avlsr+
     EGE27805.1   8 SYNIHKG-MSPTNRLVRLMGMKDALLKTNPDILCLQEVQGQNLKRT------IDFTEFPDGGQhewfgeflgiassygkNAEYEHGHHGNAVLSRH 96 
                    5666666.55555556666688999999*********999998888......55555555555566677777788888888999************ PP

                    TEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGG CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  82 pltslfrrtfiefndlvaalrreplaakleqlni................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsddd 161
                    pl+ +           +   ++ +  +k     +                 + + + l rd++++++  +  +++++ +a++i+aGDfN   ++  
     EGE27805.1  97 PLDPK-----------HNLNITVNRLEKRG---VlhcevhpdgwrrpvvvLCCHLNLLHRDRIKQYQAIRDYIFTLPADASLILAGDFND--WSKK 176
                    **777...........22222222222222...245577777899999999***************************************..3333 PP

                    BSCGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 162 srvlrtrglalapapvglyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                    s    +  ++ +     +   +g++ +t +++ +   lDri+++ +l+++ + v+    +++       SDH
     EGE27805.1 177 SCQALSSLGLSE----VFLQVHGEYPATFPAKMPVLSLDRIYVR-RLKVHNAMVHGGVPWSNL------SDH 237
                    333333333333....4788888888888888888888******.899999999999999988......999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1862.15
//
Query:       EGE27806.1  [L=203]
Description: RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-56  189.0   0.0    9.5e-56  188.7   0.0    1.0  1  Ham1p_like  Ham1 family


Domain annotation for each model (and alignments):
>> Ham1p_like  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   0.0   5.3e-60   9.5e-56       2     185 ..       5     194 ..       5     196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 5.3e-60
                 EEC-S-HHHHHHHHHHTTTECCCE...EECCCCEE----BSSSHHHHHHHHHHHHHH.HTS-EEEEEEEEEEGGGTTTBGGGTTTTTHTTCHHHHHHHH CS
  Ham1p_like   2 vfaTgNkgKlrevkeilaeellevk..slkelelpeveEtqgtfeenalkKaraaae.aglpvladDsgLevdaLnglPGvysarfagegaedeenlak 97 
                 v+a++N+gKl+e+++++++ +l v+  +  +l   +v E++++f ena++Kar+aa+ +glp++adDsgL+v  L+++PG++sar+ag++++d++n+ak
  EGE27806.1   5 VLASNNQGKLAEFQALFDDADLGVHiiTQGSLGIGDVSEDGKSFIENAIIKARHAAKvSGLPAVADDSGLCVPILGNAPGIFSARYAGRHGDDAANNAK 103
                 79***************995555552255555999999******************977**************************************** PP

                 HHHHCTHTTS--...EEEEEEEEEEEET.TTTEEEEEEEEEEEEE-SS.--SSSSTTGGGEEETT-SSBTTTS.CHHHHHHSHHHHHHHHHH CS
  Ham1p_like  98 lleeleeeeedr...sArfvcvlaladp.eeeeellfeGeveGeiveeprgeggfGyDpiFvpeegektfaelskeeknaiShRgkAlekll 185
                 lle+l+   ++r    A fvcvla++++ ++   l++ G+++Gei++ep ge+gfGyDp+F+ ++ +k+ a+l+ + knaiShR+ Al+ ll
  EGE27806.1 104 LLEQLKPY-RSRapiDAFFVCVLAYVRHgDDPMPLIAIGKWHGEILNEPVGEHGFGYDPLFYIPKLKKSSAQLDRAAKNAISHRASALQDLL 194
                 *****852.345677*************5444557777*************************98789*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1631.89
//
Query:       EGE27807.1  [L=444]
Description: trigger factor [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-37  126.5  15.6    1.9e-36  125.5   8.0    3.0  3  Trigger_C  Bacterial trigger factor protein (TF) C-terminus
    3.5e-34  118.2   3.0    3.5e-34  118.2   3.0    2.9  3  Trigger_N  Bacterial trigger factor protein (TF)
    8.1e-17   61.3   0.6    2.2e-16   59.9   0.6    1.7  1  FKBP_C     FKBP-type peptidyl-prolyl cis-trans isomerase
     0.0024   17.7   0.9     0.0024   17.7   0.9    3.8  5  SurA_N_3   SurA N-terminal domain
  ------ inclusion threshold ------
          3    7.7  15.4        3.7    7.4   1.0    4.7  5  SurA_N_2   SurA N-terminal domain


Domain annotation for each model (and alignments):
>> Trigger_C  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.013        46      36     106 ..      17      85 ..       6      90 .. 0.87
   2 ?    0.2   0.4      0.19   6.9e+02     105     128 ..     128     151 ..     122     167 .. 0.71
   3 !  125.5   8.0   5.2e-40   1.9e-36       2     161 ..     265     420 ..     264     421 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.013
                 GEEEEE-HHHHHHHHHHHHHHHHHCT...TSSHHCHHHHHCTHCCCHCHHCHHHHHHHHHHHHHHHHHHHH CS
   Trigger_C  36 kaeidiPeslveeeidrllrqakqqleqqGldleeylelsgsseeelreelkeeAekrVklgLvleeiake 106
                 + ++++P + ++  +++++r ++++++ +G++  ++    ++ + ++ +  ++e+ ++V ++ v+e+i+++
  EGE27807.1  17 QLTVKVPVGNIQSKVESRIRSVAKTAKIDGFRKGKVP--VSHIRSQYGAGIQQEVINDVIRDTVFEAIGNA 85 
                 6799**********************99999999964..44599999999999999999999999998765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.19
                 HHTT----HHHHHHHHHHHCCCTT CS
   Trigger_C 105 keekievteeelkeeleelasqyg 128
                 +++  ++++e++++++e+l +q +
  EGE27807.1 128 ERHTATISDEDVDTMVENLQKQRQ 151
                 566677888888888888887765 PP

  == domain 3  score: 125.5 bits;  conditional E-value: 5.2e-40
                 HHHHHHHHCCCCHHHHHHHHHHHHHCCCHCCCGCGEEEEE-HHHHHHHHHHHHHHHHHCT....TSSHHCHHHHHCTHCCCHCHHCHHHHHHHHHHHHH CS
   Trigger_C   2 LeeLkedlrkqleeekeeatkeelkealldkLvekaeidiPeslveeeidrllrqakqql.eqqGldleeylelsgsseeelreelkeeAekrVklgLv 99 
                 L++Lk+d+rk++e+e ++a+++++k+a++d+L+ek+e+d+P++++++eidr+++ +++++ +q G+d++ +     +s   + e ++++A + V+lg++
  EGE27807.1 265 LDQLKADVRKNMEREVKHAARNQVKQAAFDALLEKNEFDVPKAMLDQEIDRQRQLMLNRFsQQFGADPKTF-----DSNMLPNELFEDQALRAVRLGVL 358
                 9***************************************************9999999944458888884.....6999******************* PP

                 HHHHHHHTT----HHHHHHHHHHHCCCTTSXHHHHHHHHHHXHHHH.HHHHHHHHHHHHHHHC CS
   Trigger_C 100 leeiakeekievteeelkeeleelasqygmepeevkeflkkneqls.alkedileekvvdlll 161
                 +++i++ +k++v+++++++ ++e a++y+ +p ev+e++ +++ ++ ++++ +le++vvd+ll
  EGE27807.1 359 VSQIIESQKLTVDQDRVTAFIAEAAENYE-DPAEVIEYYTNDKAQRaQVESVVLEDQVVDYLL 420
                 *****************************.*************999***************97 PP

>> Trigger_N  Bacterial trigger factor protein (TF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   3.0   9.8e-38   3.5e-34       3     141 .]       6     146 ..       4     146 .. 0.92
   2 ?    4.5   0.1     0.012        42      54     129 ..     272     304 ..     208     335 .. 0.81
   3 ?   -3.0   0.1       2.4   8.6e+03      51      53 ..     390     392 ..     366     429 .. 0.57

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 9.8e-38
                 EEEEEEETTEEEEEEEE-HHHCHHHHHHHHHHHHTTS-BTTC-TT---CCCHHHHCTCCCHHHHHHHHHHCCCCCCCCCS..-EE.EE.E.EEETTC.. CS
   Trigger_N   3 vtvekleglkvkltvevpaeevekavekalkklakkvkipGFRkGkvPrsiiekrygkevleealeellnealeeaieeeklepvgqpei.eleegkd. 99 
                 ++v+  ++ + +ltv+vp   ++++ve +++++ak++ki+GFRkGkvP+s+i+++yg+++++e++++++++++ eai ++k+++vg p+i +++ ++d 
  EGE27807.1   6 ISVNVVSDKETQLTVKVPVGNIQSKVESRIRSVAKTAKIDGFRKGKVPVSHIRSQYGAGIQQEVINDVIRDTVFEAIGNAKIRVVGVPNIdDVKLEDDf 104
                 55666655599******************************************************************************9743333334 PP

                 EEEEEEEEE--EEEE.XCCCSEEEEEXHHHHHHHHHHHHHHH CS
   Trigger_N 100 leftvevevkPevelgdykglevekeevevtdeevdeeleel 141
                 l+++++ve++Peve++ + ++eve+++++++de+vd ++e+l
  EGE27807.1 105 LVYQATVETFPEVEVQGLGEIEVERHTATISDEDVDTMVENL 146
                 ***************88**********************986 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.012
                 HHHHCTCCCHHHHHHHHHHCCCCCCCCCS..-EE.EE.EEEETTC.EEEEEEEEE--EEEE.XCCCSEEEEEXHHH CS
   Trigger_N  54 iekrygkevleealeellnealeeaieeeklepvgqpeieleegkdleftvevevkPevelgdykglevekeevev 129
                 ++k++++ev+  a +++ + a++  +e+++++                                           v
  EGE27807.1 272 VRKNMEREVKHAARNQVKQAAFDALLEKNEFD-------------------------------------------V 304
                 67788888888888888888888888888863...........................................1 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.4
                 CCC CS
   Trigger_N  51 rsi 53 
                 +++
  EGE27807.1 390 AEV 392
                 333 PP

>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.6   6.1e-20   2.2e-16       5      93 ..     160     239 ..     156     240 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 6.1e-20
                 B-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEE CS
      FKBP_C   5 akegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveL 93 
                  +egd++t++++g + dg++f++    a++ ++++Gsg++i+Gfe++++gmk+Ge++t+t+++++ Y++++lag      ++  F ++L
  EGE27807.1 160 LEEGDQATFDFEGLI-DGEKFEGG--SAENHTLVIGSGRMIPGFEDGMKGMKAGEEKTITVTFPEDYQAEHLAG------KEAQFIITL 239
                 789************.********..9********************************************977......777777766 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.67   2.4e+03      81      98 ..      63      80 ..      55      86 .. 0.80
   2 ?   -0.6   0.1      0.28     1e+03      48      69 ..     133     153 ..     123     171 .. 0.59
   3 !    4.6   0.8    0.0071        25      85     122 ..     281     318 ..     259     320 .. 0.76
   4 !   17.7   0.9   6.6e-07    0.0024      51     120 ..     310     382 ..     306     390 .. 0.93
   5 ?   -2.0   0.0      0.77   2.8e+03      42      61 ..     423     442 ..     416     444 .] 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.67
    SurA_N_3 81 lglrqqvldqlidealll 98
                +g++q+v++++i++++++
  EGE27807.1 63 AGIQQEVINDVIRDTVFE 80
                689999999999998876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
    SurA_N_3  48 kIsraefqqayrrqleqlrqql 69 
                  Is ++++  +++ ++q rq +
  EGE27807.1 133 TISDEDVDTMVENLQKQ-RQTF 153
                 45555555555554443.3333 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0071
    SurA_N_3  85 qqvldqlidealllqeakklglsvsdeevakeiasipa 122
                 + + ++ +++a++++  +k+++ v+++ +++ei ++++
  EGE27807.1 281 KHAARNQVKQAAFDALLEKNEFDVPKAMLDQEIDRQRQ 318
                 34566778999999999999999999999999987765 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 6.6e-07
    SurA_N_3  51 raefqqayrrqleqlrqqlgg...nldaelldelglrqqvldqlidealllqeakklglsvsdeevakeiasi 120
                  +e++++ + +l++++qq+g    ++d+++l ++ +++q+l+ +    l++q  + ++l+v ++ v + ia+ 
  EGE27807.1 310 DQEIDRQRQLMLNRFSQQFGAdpkTFDSNMLPNELFEDQALRAVRLGVLVSQIIESQKLTVDQDRVTAFIAEA 382
                 6899***************9888899*******************************************9765 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.77
    SurA_N_3  42 akVngekIsraefqqayrrq 61 
                 akV ++ + ++e+  a ++q
  EGE27807.1 423 AKVSDKTVNYQELLAAAQQQ 442
                 78888888888888887776 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.36   1.3e+03      83     100 ..      63      80 ..      55      89 .. 0.77
   2 ?    4.9   0.3    0.0061        22     102     136 ..     126     160 ..     119     168 .. 0.84
   3 ?    3.5   1.4     0.017        61      83     134 ..     278     329 ..     263     330 .. 0.71
   4 ?    7.4   1.0     0.001       3.7      58     122 ..     315     383 ..     303     409 .. 0.76
   5 ?    0.9   0.0      0.11   3.8e+02      44      63 ..     423     442 ..     421     444 .] 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.36
    SurA_N_2  83 aqlreqvldqlvseklle 100
                 a ++++v++++++++++e
  EGE27807.1  63 AGIQQEVINDVIRDTVFE 80 
                 568888999999888876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0061
    SurA_N_2 102 eaeklGltvsdeelqdaiqgnpaikqsFqpetGkF 136
                 e+e+   t+sde ++ ++++ +  +q+F  ++G+ 
  EGE27807.1 126 EVERHTATISDEDVDTMVENLQKQRQTFETKEGEL 160
                 77888899************8887899*9888876 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.017
    SurA_N_2  83 aqlreqvldqlvseklleqeaeklGltvsdeelqdaiqgnpaikqs.FqpetG 134
                  ++ + +  + v+++ ++  +ek  + v ++ l++ i  + +++ + F ++ G
  EGE27807.1 278 REV-KHAARNQVKQAAFDALLEKNEFDVPKAMLDQEIDRQRQLMLNrFSQQFG 329
                 333.4455666999999999999999999999999999955555555887765 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.001
    SurA_N_2  58 qaveearqqlqqqlg...enfdeseedeaqlreqvldqlvseklleqeaeklGltvsdeelqdaiqg.n 122
                 ++ + + +++ qq+g   ++fd+++  ++ +++q+l ++    l++q +e+ +ltv ++ + ++i +  
  EGE27807.1 315 RQRQLMLNRFSQQFGadpKTFDSNMLPNELFEDQALRAVRLGVLVSQIIESQKLTVDQDRVTAFIAEaA 383
                 3333333455666551115688888888************************************99842 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.11
    SurA_N_2  44 aeVnGekIslqefqqaveea 63 
                 a+V ++++++qe+ +a +++
  EGE27807.1 423 AKVSDKTVNYQELLAAAQQQ 442
                 89***********9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3355.50
//
Query:       EGE27808.1  [L=217]
Description: ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-87  290.1   0.0    7.9e-87  289.9   0.0    1.0  1  CLP_protease  Clp protease


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.9   0.0   4.4e-91   7.9e-87       2     181 ..      33     212 ..      32     213 .. 0.99

  Alignments for each domain:
  == domain 1  score: 289.9 bits;  conditional E-value: 4.4e-91
                   SSSECHHHHHHHHTTTEEEEES-BSHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEEEEEETHHHHHHHTS-T CS
  CLP_protease   2 kgeraydiysrllkeriiflgseiddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyikpdvsticlGlaaSmgslllaagek 98 
                   +ger++di+srll+er+ifl+++++d++an i+aqLl+Lea +p+kdi+lyinspGG vtag+aIydtm++ikp+vstic+G+aaSmgs+ll+agek
    EGE27808.1  33 RGERSFDIFSRLLRERVIFLTGQVEDNMANLIVAQLLFLEADNPEKDIHLYINSPGGVVTAGMAIYDTMNFIKPHVSTICMGQAASMGSFLLSAGEK 129
                   789********************************************************************************************** PP

                   TGEEEETTEEEEES-TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-SS CS
  CLP_protease  99 gkRfalpnarimihqPlggaqgqasdieieaeellkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLideviek 181
                   gkR+al+n+r+mihqPlgg++gqasdiei+a+e+ ++k++ln++la+htgq++ek+e+d+drd+f+sae+A +yGL+d v++k
    EGE27808.1 130 GKRYALANSRVMIHQPLGGFRGQASDIEIHAREIIELKAKLNRLLAEHTGQPIEKLERDTDRDHFMSAEQARDYGLVDVVLDK 212
                   ********************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1783.71
//
Query:       EGE27809.1  [L=438]
Description: ATP-dependent protease ATP-binding subunit ClpX [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-49  168.2   0.3    2.7e-49  167.6   0.3    1.3  1  AAA_2            AAA domain (Cdc48 subfamily)
    2.5e-17   62.7   1.2    4.2e-17   62.0   0.2    1.9  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    7.2e-17   62.1   0.1    1.7e-16   60.9   0.1    1.7  1  AAA              ATPase family associated with various cellul
      3e-15   55.8   3.4    6.4e-15   54.7   3.4    1.6  1  zf-C4_ClpX       ClpX C4-type zinc finger
    2.3e-07   30.9   0.0      1e-06   28.8   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
    1.3e-06   27.7   0.1    2.4e-06   26.8   0.1    1.4  1  MCM              MCM P-loop domain
    2.2e-06   27.2   0.3    0.00088   18.7   0.2    3.0  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    2.8e-06   27.7   0.1    2.3e-05   24.7   0.1    2.3  1  AAA_22           AAA domain
      1e-05   25.3   0.5    4.8e-05   23.2   0.5    2.0  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    4.7e-05   23.2   0.0      0.003   17.3   0.0    2.4  1  Sigma54_activat  Sigma-54 interaction domain
    0.00024   21.3   0.0    0.00061   19.9   0.0    1.6  1  Sigma54_activ_2  Sigma-54 interaction domain
    0.00057   20.4   0.1     0.0024   18.4   0.0    2.1  2  AAA_18           AAA domain
     0.0006   19.4   0.0     0.0011   18.5   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
     0.0015   18.6   0.0     0.0028   17.7   0.0    1.5  1  AAA_14           AAA domain
     0.0027   16.8   0.0     0.0048   16.0   0.0    1.4  1  T2SSE            Type II/IV secretion system protein
     0.0033   16.7   0.3      0.009   15.3   0.3    1.8  1  TIP49            TIP49 P-loop domain
     0.0034   17.8   0.5      0.014   15.8   0.1    2.2  2  AAA_16           AAA ATPase domain
     0.0056   16.4   0.0      0.013   15.3   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
     0.0076   16.2   0.1      0.027   14.4   0.1    2.0  1  Rad17            Rad17 P-loop domain
      0.008   16.2   0.0      0.019   14.9   0.0    1.7  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
  ------ inclusion threshold ------
      0.011   15.6   0.1      0.081   12.8   0.0    2.3  2  NACHT            NACHT domain
      0.013   15.7   0.0      0.039   14.1   0.0    1.9  1  AAA_33           AAA domain
      0.015   15.8   0.1      0.041   14.4   0.1    1.7  1  ABC_tran         ABC transporter
      0.016   15.0   0.1      0.026   14.3   0.1    1.3  1  AAA_24           AAA domain
      0.017   14.8   0.0      0.051   13.3   0.0    1.8  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.041   13.6   0.1       0.11   12.2   0.1    1.7  1  AAA_29           P-loop containing region of AAA domain
      0.043   14.2   0.0       0.11   12.9   0.0    1.8  1  RNA_helicase     RNA helicase
      0.049   13.1   0.0       0.12   11.8   0.0    1.6  1  PhoH             PhoH-like protein
      0.055   13.3   0.0       0.19   11.6   0.0    1.9  2  AAA_3            ATPase family associated with various cellul
      0.069   13.5   1.4          2    8.8   0.1    2.6  2  AAA_19           AAA domain
      0.071   12.4   1.8        1.2    8.4   0.1    2.2  2  ATPase           KaiC
      0.092   12.1   0.0       0.18   11.1   0.0    1.5  1  AAA_8            P-loop containing dynein motor region D4
      0.098   12.5   0.0       0.25   11.1   0.0    1.5  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
       0.11   12.1   0.0       0.33   10.6   0.0    1.7  1  AAA_15           AAA ATPase domain
       0.12   12.3   0.5       0.44   10.5   0.5    1.9  1  ResIII           Type III restriction enzyme, res subunit
       0.14   12.3   0.0       0.28   11.4   0.0    1.5  1  AAA_28           AAA domain
       0.23   11.2   1.3        0.6    9.8   0.0    2.2  2  DEAD             DEAD/DEAH box helicase
       0.56   10.2   4.5        2.7    8.0   5.0    1.9  1  DUF4428          Domain of unknown function (DUF4428)


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   0.3   5.7e-52   2.7e-49       3     171 .]     137     334 ..     135     334 .. 0.97

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 5.7e-52
                 ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----...---------HH CS
       AAA_2   3 iisilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSreg 94 
                 +++ill+gptg+Gkt+la++la++l+v    ++++ada++l+e    +e+ve++v++l++a++++v+++e+Gi+++DEidKi++k   +s+++dvS+eg
  EGE27809.1 137 KSNILLIGPTGSGKTLLAQTLAKMLDV----PFAMADATTLTEagyvGEDVENIVQKLLQASDYDVQKAEKGIIYIDEIDKISRKsenPSITRDVSGEG 231
                 79************************8....*******************************************************999********** PP

                 HHHHHHHHHH--EE-.........----.--EE-TT-EEEEEE--TTHHHHTTTS-S................TTTTSGGG--HHHHHHTT--HHHHTT CS
       AAA_2  95 VqrdLLqileggtlt.........dkqg.rkvdtknilfImtgafgsskisdesrsk................eeeeekkkeeveeelkkglipEllgR 167
                 Vq++LL+++eg++++         + q+  +vdt+nil+I++gaf++ ++  ++r++                + +e   + e+e+++k+glipEl+gR
  EGE27809.1 232 VQQALLKLIEGTVANippqggrkhPRQEmIQVDTSNILMIVGGAFAGLDKVIRQRTEktgigfhadvkaqdesSITELFREVEAEDLIKFGLIPELIGR 330
                 ************************88888******************99999888889************99989999999****************** PP

                 --EE CS
       AAA_2 168 lpei 171
                 lp+i
  EGE27809.1 331 LPVI 334
                 *986 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.2   8.9e-20   4.2e-17       1      75 [.     340     418 ..     340     423 .. 0.95

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 8.9e-20
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSST CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelke 75 
                    L++++l++I+++   al k+++ l + +gv+l++++eal a+a+++ ++++GAR+Lr+ii++ + d+++e+++  +++e
     EGE27809.1 340 LDEAALVQILTEpknALVKQYQYLFDmEGVQLTFEPEALTAIAKRAQERKTGARGLRSIIENALMDTMYELPSMTDIAE 418
                    899**********************9999*****************************************999888775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.1   3.5e-19   1.7e-16       1      99 [.     140     246 ..     140     291 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 3.5e-19
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekkirelfkeakeka....kpsilfiDEidalaksr...sgseseeeervvnqLlt 91 
                 +ll+Gp G GKTlla+ +ak l+v+f   ++++l+   yvge  ++i + + +a+       ++ i+ iDEid++ +++   s + + ++e v+++Ll+
  EGE27809.1 140 ILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTeAGYVGEDVENIVQKLLQASDYDvqkaEKGIIYIDEIDKISRKSenpSITRDVSGEGVQQALLK 238
                 69*********************************677*****999999888886555666677*************99988778899999******** PP

                 HHHHTTTS CS
         AAA  92 eldgvkkk 99 
                  ++g   +
  EGE27809.1 239 LIEGTVAN 246
                 ***98766 PP

>> zf-C4_ClpX  ClpX C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   3.4   1.4e-17   6.4e-15       2      37 ..       8      42 ..       7      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.4e-17
  zf-C4_ClpX  2 rCSFCgksesevkklIagpngvyICdeCvelcneii 37
                +CSFCgk+++ev+klIag + ++IC+eC++ c +++
  EGE27809.1  8 SCSFCGKKKTEVQKLIAGND-ANICNECIAVCGDLL 42
                7*****************86.8**********9987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.2e-09     1e-06       1      79 [.     139     216 ..     139     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.2e-09
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--H CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraes 79 
                 ++lL+Gp+G+gK+ la+ la++l  ++ +   t  t++  +   +e    ++ l+ s +  +  e+ i+++DE++++++
  EGE27809.1 139 NILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVEN-IVQKLLQASDYDVQKAEKGIIYIDEIDKISR 216
                 689********************999999999998888877777773.3333333344333344999*********986 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1     5e-09   2.4e-06      18     137 ..      92     218 ..      80     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 5e-09
                 HHHHSSTTSSS-HHHHHHHHHHHH---EB..BBSSSSB....BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEE.EEESSSSSSSHSSSEEEEESSSSS CS
         MCM  18 lvksiapsiyghedvkkaillqlfggvkk..kledktk....lrgdinvllvgdpgtaKsqlLkyveklaprav.ytsgkgssaagLtaavvrdeetge 109
                 l + +   ++g++  kka+++++   +k+   ++dk+       ++ n+ll+g  g +K+ l ++++k+++    ++ +++ ++ag +   v +  ++ 
  EGE27809.1  92 LRAHLDDYVIGQDVAKKALAVAVYNHYKRlkVANDKKDtdgvELSKSNILLIGPTGSGKTLLAQTLAKMLDVPFaMADATTLTEAGYVGEDVENIVQKL 190
                 556666789999999***99999888774223333333223346899********************9998765155677889*******999888888 PP

                 EEEEETHHHHTTTSEEEEESGGGSTCHH CS
         MCM 110 fvleaGalvladkGvcciDefdkmkeed 137
                 +      +  a+kG+++iDe+dk++++ 
  EGE27809.1 191 LQASDYDVQKAEKGIIYIDEIDKISRKS 218
                 888888999**************99865 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.84   3.9e+02       5      20 ..     100     115 ..      97     121 .. 0.87
   2 !   18.7   0.2   1.9e-06   0.00088      23      47 ..     138     162 ..     132     190 .. 0.83
   3 ?    3.8   0.0     0.069        33     101     121 ..     197     217 ..     188     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.84
  Mg_chelatase   5 vkGqeeakraleiaaa 20 
                   v+Gq+ ak+al +a+ 
    EGE27809.1 100 VIGQDVAKKALAVAVY 115
                   89***********975 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.9e-06
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsllp 47 
                    n+ll+Gp GsGKt+la+ l+++l 
    EGE27809.1 138 SNILLIGPTGSGKTLLAQTLAKMLD 162
                   69******************99984 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.069
  Mg_chelatase 101 eislahnGvLfLDElpefkrk 121
                   ++ +a++G++++DE+ +++rk
    EGE27809.1 197 DVQKAEKGIIYIDEIDKISRK 217
                   7999***********999987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   4.8e-08   2.3e-05       4     105 ..     136     215 ..     133     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.8e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                 +++ ++++G++G+GKT+l+++l++ l         +++++  +++ +t+   + +++ ++++            ll+a    ++++ + +++ iDE+++
  EGE27809.1 136 SKSNILLIGPTGSGKTLLAQTLAKML---------DVPFAMADATTLTEAGYVGEDVENIVQ-----------KLLQASDYDVQKAEK-GIIYIDEIDK 213
                 57889*********************.........899998888888888777777777777...........477777777777777.7888888887 PP

      AAA_22 103 lrs 105
                 + s
  EGE27809.1 214 I-S 215
                 7.4 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.5     1e-07   4.8e-05       6     101 ..      96     219 ..      92     222 .. 0.66

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1e-07
      RuvB_N   6 leey.igqekvkeklkifieaakkr.......eeald.......hvllyGpPGlGkttlakiiakelgvklkitsgPvlekag....dlaalltnl... 82 
                 l++y igq+  k+ l++++    kr       ++  d        +ll+Gp G Gkt la+ +ak l+v + ++ + +l +ag    d+  ++++l   
  EGE27809.1  96 LDDYvIGQDVAKKALAVAVYNHYKRlkvandkKD-TDgvelsksNILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGyvgeDVENIVQKLlqa 193
                 5666358888888888887665555222211111.11222222269*****************************999999874445677777665322 PP

      RuvB_N  83 .......eekdvlfideihrlsrave 101
                         ek +++idei ++sr+ e
  EGE27809.1 194 sdydvqkAEKGIIYIDEIDKISRKSE 219
                 2222222245689*****99999877 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.4e-06     0.003      13     107 ..     128     216 ..     117     221 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.4e-06
                      HHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTT.SS-BEHHHHHTTTSEEEEETGGGS CS
  Sigma54_activat  13 eqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGA.ekekkGlfekadgGtlfLDeigel 105
                      + ++ v  +++++l+ G +G+GK+lla+++ +  +    pf   +     ++l e+   G           ++    ++ka++G++++Dei ++
       EGE27809.1 128 KDTDGVELSKSNILLIGPTGSGKTLLAQTLAKMLD---VPFAMADA----TTLTEAGYVGEDVENIVQKlLQASDYDVQKAEKGIIYIDEIDKI 214
                      55666778899*****************9987654...56655544....45666666665544443330344446788999999999998888 PP

                      -H CS
  Sigma54_activat 106 pl 107
                      + 
       EGE27809.1 215 SR 216
                      75 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.3e-06   0.00061      18      84 ..     134     217 ..     123     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.3e-06
                      HT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.............HHHHHH.......TTTSEEEEEE-TT--HH CS
  Sigma54_activ_2  18 aqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.............ldlleq.......akggtLylkdiadlska 84 
                      + sk++++l+G+ Gsgk+l A++L+k       +f +++  +l+             ++ll+        a+ g++y+ +i+++s++
       EGE27809.1 134 ELSKSNILLIGPTGSGKTLLAQTLAKMLDV---PFAMADATTLTeagyvgedvenivQKLLQAsdydvqkAEKGIIYIDEIDKISRK 217
                      56899********************98777...55555555444455777777777755555455555558************9986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     5e-06    0.0024       1      63 [.     140     217 ..     140     247 .. 0.70
   2 ?   -1.8   0.0       9.4   4.4e+03      81     106 ..     347     378 ..     302     398 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf................gvnlrdvakenglllevdpealdeskrldedkldkllda 63 
                 Ill G+ G+GKt la+ L+k+l +                g+ +  ++++     ++d +   e+ ++ +d  dk++++
  EGE27809.1 140 ILLIGPTGSGKTLLAQTLAKMLDVpfamadattlteagyvGEDVENIVQKLLQASDYDVQ-KAEKGIIYIDEIDKISRK 217
                 99*******************988887777777777777755555555554444444433.344555555555554444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 9.4
      AAA_18  81 ghlaeleseaakdikk......vvLtaspeel 106
                 ++l e+  +  k++++      v Lt +pe l
  EGE27809.1 347 QILTEPKNALVKQYQYlfdmegVQLTFEPEAL 378
                 55555555666666666666668888888776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.4e-06    0.0011      33     110 ..     137     212 ..     133     218 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.4e-06
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrk.gvygPpggkklvvFvDDln 110
                 k ++ll+GptG+GKt+++++l k ld   + +++   +  t+a  + + +e+ ++k  + + y  ++ +k ++++D+++
  EGE27809.1 137 KSNILLIGPTGSGKTLLAQTLAKMLD---VPFAMADATTLTEAGYVGEDVENIVQKLLQaSDYDVQKAEKGIIYIDEID 212
                 789**********************9...55555566666666666666666666654426688889999999999876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.8e-06    0.0028       4      77 ..     139     215 ..     136     246 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.8e-06
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla..dpekllelileklke......ekktylflDEiqevp 77 
                  +++ G+  +GKT l+++l+k l      +   +  + +++ +   d e++ + +l+   +       +k ++++DEi +++
  EGE27809.1 139 NILLIGPTGSGKTLLAQTLAKMLD---VPFAMADATTLTEAGYVgeDVENIVQKLLQA--SdydvqkAEKGIIYIDEIDKIS 215
                 57899**************98887...3334444433333333311222344444443..13446678999*******9984 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     1e-05    0.0048     123     153 ..     134     161 ..      83     170 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1e-05
       T2SSE 123 rkavrerglilvsGgTgsGKttllyallkei 153
                 + +   + +il+ G+TgsGKt l+ +l k++
  EGE27809.1 134 ELS---KSNILLIGPTGSGKTLLAQTLAKML 161
                 444...88***************99998876 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   1.9e-05     0.009      47      92 ..     134     177 ..      88     242 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  47 klaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevysle 92 
                 +l+   +Ll Gp+g+Gkt la +++k l   vpf++  ++ +  + 
  EGE27809.1 134 ELSKSNILLIGPTGSGKTLLAQTLAKMLD--VPFAMADATTLTEAG 177
                 366678*********************96..***999998876554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     3e-05     0.014      25      48 ..     138     161 ..     120     241 .. 0.83
   2 ?   -2.0   0.0       8.8   4.2e+03      72      93 ..     336     356 ..     289     405 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3e-05
      AAA_16  25 elvllsGesGvGKsslvrellral 48 
                 +++ll+G+ G+GK+ l+++l++ l
  EGE27809.1 138 SNILLIGPTGSGKTLLAQTLAKML 161
                 89******************9855 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 8.8
      AAA_16  72 laqalareellrqlldeaesae 93 
                  ++ l++   l q+l+e+++a+
  EGE27809.1 336 SLEELDE-AALVQILTEPKNAL 356
                 3334422.44444444444333 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.7e-05     0.013      47      69 ..     137     159 ..     130     163 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-05
   IstB_IS21  47 kenivllGpsGvGKshlaialgv 69 
                 k ni+l+Gp+G GK+ la +l++
  EGE27809.1 137 KSNILLIGPTGSGKTLLAQTLAK 159
                 78*****************9986 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   5.7e-05     0.027      21      71 ..     112     163 ..     105     218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.7e-05
       Rad17  21 lav..hkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgi 71 
                 +av  h k+++  ++  ++d +e  k +iLLi GP+G gk+   + L+k l +
  EGE27809.1 112 VAVynHYKRLKVANDKKDTDGVELSKSNILLI-GPTGSGKTLLAQTLAKMLDV 163
                 55555889999999999********9999987.9***************9865 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.1e-05     0.019      19      46 ..     137     164 ..     103     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.1e-05
                 TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve 46 
                 ++ ilL G+ G+GKT l++ lak l+v 
  EGE27809.1 137 KSNILLIGPTGSGKTLLAQTLAKMLDVP 164
                 356********************99875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00017     0.081       3      24 ..     140     161 ..     138     169 .. 0.90
   2 ?   -0.5   0.0       2.2     1e+03      77     115 ..     198     242 ..     183     246 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00017
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 ++l G+ GsGKT L+q la  +
  EGE27809.1 140 ILLIGPTGSGKTLLAQTLAKML 161
                 799***************9865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.2
                 CCSCCCEEEEEE-STT-SS-TCH...............HHHHHCT CS
       NACHT  77 lelperlLlilDglDelvtdlgq......kekqpvrtlLselirk 115
                 ++ +e+  + +D +D+++++ ++         + v++ L +li++
  EGE27809.1 198 VQKAEKGIIYIDEIDKISRKSENpsitrdVSGEGVQQALLKLIEG 242
                 56677888999*****99987778887774455566666677766 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   8.3e-05     0.039       2      25 ..     140     165 ..     140     217 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.3e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..a 25 
                 +ll+G+ GsGK+ la+ l+k l+  +
  EGE27809.1 140 ILLIGPTGSGKTLLAQTLAKMLDvpF 165
                 689****************9988552 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   8.8e-05     0.041      12      37 ..     138     163 ..     132     242 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.8e-05
                 SEEEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllkp 37 
                 + + ++G++G+GK+ L+++la++l+ 
  EGE27809.1 138 SNILLIGPTGSGKTLLAQTLAKMLDV 163
                 56789****************99875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   5.5e-05     0.026       2      79 ..     137     216 ..     136     232 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.5e-05
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkplfi.........dtekGlksldadkfpdieswedfldevvelaaeladyktlviDtidelee 79 
                 k +il++Gp g+GKT la +l  k l +          te+G+   d+ +++     +++l++ +++  ++a+  ++ iD id++ +
  EGE27809.1 137 KSNILLIGPTGSGKTLLAQTL-AKMLDVpfamadattLTEAGYVGEDVENIV-----QKLLQASDYD-VQKAEKGIIYIDEIDKISR 216
                 678******************.776666444455555666666555555544.....6666666666.3333445677777777766 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00011     0.051       2      23 ..     138     159 ..     137     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00011
   PduV-EutP   2 kkilliGkvgsGKttLtqalkg 23 
                 ++illiG++gsGKt L+q+l +
  EGE27809.1 138 SNILLIGPTGSGKTLLAQTLAK 159
                 579***************9975 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00023      0.11      17      38 ..     133     153 ..     119     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00023
      AAA_29  17 ieidlkgatlltGpsGsGKSTl 38 
                 +e++ + ++ll+Gp+GsGK+ l
  EGE27809.1 133 VELSKS-NILLIGPTGSGKTLL 153
                 566644.6***********754 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00024      0.11       1      26 [.     140     165 ..     140     227 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00024
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   i+l Gp+g GK++la++Lak l   +
    EGE27809.1 140 ILLIGPTGSGKTLLAQTLAKMLDVPF 165
                   6899**************99987444 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00025      0.12      19      40 ..     137     158 ..     121     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
                 -SEEEEE--TTSSTTHHHHHHH CS
        PhoH  19 ndivfaiGpaGtGKtylavala 40 
                 ++ +  iGp+G+GKt+la +la
  EGE27809.1 137 KSNILLIGPTGSGKTLLAQTLA 158
                 4456789***********9887 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       7.3   3.4e+03      13      36 ..     104     127 ..     100     135 .. 0.79
   2 ?   11.6   0.0    0.0004      0.19       2      77 ..     140     217 ..     139     225 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.3
       AAA_3  13 tllvkalakaldlefkriqftpdl 36 
                  ++ kala a+  ++kr++++ d 
  EGE27809.1 104 DVAKKALAVAVYNHYKRLKVANDK 127
                 56678999999999***9999886 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0004
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvf...anllladeinrappk 77 
                 +ll g  G +ktll+++lak+ld+ f     t+ l  +  +G +v +  +k ++ +   v    + ++  dei++ + k
  EGE27809.1 140 ILLIGPTGSGKTLLAQTLAKMLDVPFAMADATT-LTEAGYVGEDVENIVQKLLQASDYDVQkaeKGIIYIDEIDKISRK 217
                 7899999*******************9988875.788888888887777766655555554111457777777776666 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0041         2       7      33 ..     134     160 ..     129     168 .. 0.83
   2 ?    3.5   0.1      0.17        80      66     116 ..     167     217 ..     154     236 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0041
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhival 33 
                 +l+++++l++++ G+GKT + ++  ++
  EGE27809.1 134 ELSKSNILLIGPTGSGKTLLAQTLAKM 160
                 788999************988777665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.17
      AAA_19  66 gaeatTiHrlalldfddlltealelleeaeeekklqeee.llivDEfqdvd.e 116
                  a+atT+ + + ++ d ++    +ll+ ++ + +  +e+ ++ +DE+  ++ +
  EGE27809.1 167 MADATTLTEAGYVGEDVEN-IVQKLLQASDYDVQK-AEKgIIYIDEIDKISrK 217
                 3458999999888777666.555666654444444.3446*******999843 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0026       1.2      18      38 ..     136     156 ..     126     160 .. 0.87
   2 ?    2.8   0.2      0.13        61      85     142 ..     167     226 ..     161     234 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0026
      ATPase  18 egrvvlitGepGtGKtifalq 38 
                 +++ +l+ G +G+GKt++a++
  EGE27809.1 136 SKSNILLIGPTGSGKTLLAQT 156
                 56889*************986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.13
      ATPase  85 iidasesae.esaeekdkedleelieelaeaikeikakrvviDsitgl.ayeekeavaRe 142
                 + da++ +e ++  e+ ++ +++l++   + +++ +   + iD i+ +  ++e+++ +R+
  EGE27809.1 167 MADATTLTEaGYVGEDVENIVQKLLQASDYDVQKAEKGIIYIDEIDKIsRKSENPSITRD 226
                 5555554431344446677778888888888999999999*******9777777777776 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00039      0.18      22      76 ..     135     189 ..     133     208 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00039
       AAA_8  22 qprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkk 76 
                   ++++Ll+G  GsG+  l++  a ++++ ++    t   +     ed+ ++++k
  EGE27809.1 135 LSKSNILLIGPTGSGKTLLAQTLAKMLDVPFAMADATTLTEAGYVGEDVENIVQK 189
                 5689****************99999999988877776666666666666666655 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00054      0.25       3      41 ..     141     180 ..     140     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00054
      AAA_21   3 vliGpNgsGKSnLLdaldllarl.drdvegltdelsgggg 41 
                 +liGp gsGK+ L ++l  + ++ +++++ +t ++ g++g
  EGE27809.1 141 LLIGPTGSGKTLLAQTLAKMLDVpFAMADATTLTEAGYVG 180
                 79***************98888887777776666666555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00071      0.33      19      77 ..     133     203 ..     119     241 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00071
      AAA_15  19 idlseeltvliGkNnsGKSsilealdlFlnnkekkn..............kkvikiekedleifeniseskdi 77 
                 ++ls++  +liG+ +sGK+ +++ l ++l+    +               ++v +i ++ l+ ++++  + + 
  EGE27809.1 133 VELSKSNILLIGPTGSGKTLLAQTLAKMLDVP--FAmadattlteagyvgEDVENIVQKLLQASDYDVQKAEK 203
                 68888889**********************66..337788888888888866666666666666555444443 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   0.00093      0.44      24      48 ..     137     161 ..     106     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00093
                 TSEEEEEESTTSTHHHHHHHHHHHH CS
      ResIII  24 dkrglikmaTGtGKTlvaaklierl 48 
                 + ++l+  +TG+GKTl+a  l++ l
  EGE27809.1 137 KSNILLIGPTGSGKTLLAQTLAKML 161
                 45899************98887765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0006      0.28       1      27 [.     139     166 ..     139     206 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0006
      AAA_28   1 kivitGgestGKTtlleaLaar.gypvv 27 
                 +i ++G+ ++GKT l++ La++ ++p  
  EGE27809.1 139 NILLIGPTGSGKTLLAQTLAKMlDVPFA 166
                 589*****************87655544 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0013       0.6      13      32 ..     136     155 ..     132     164 .. 0.86
   2 ?   -1.2   0.0       3.2   1.5e+03     124     144 ..     205     225 ..     179     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0013
                 TTCEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlafl 32 
                 ++ ++l+ ++TGsGKTl ++
  EGE27809.1 136 SKSNILLIGPTGSGKTLLAQ 155
                 67899***********9876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.2
                 EEEEETHHHHHHTTTHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        DEAD 124 flVlDEadrlldqgfsdfinr 144
                 ++ +DE+d+++ ++  + i r
  EGE27809.1 205 IIYIDEIDKISRKSENPSITR 225
                 566899999999988777765 PP

>> DUF4428  Domain of unknown function (DUF4428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.0    0.0058       2.7       2      27 ..       9      35 ..       8      47 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0058
     DUF4428  2 CaiCgkKigllkr.lkleDgyvCkdCl 27
                C+ CgkK++   + ++ +D ++C++C 
  EGE27809.1  9 CSFCGKKKTEVQKlIAGNDANICNECI 35
                99********9998************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.38
# Mc/sec: 3496.68
//
Query:       EGE27810.1  [L=374]
Description: DnaJ-like chaperone protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-12   47.5   2.1    2.8e-12   46.6   0.9    2.1  2  DnaJ         DnaJ domain
    1.6e-08   35.1  13.1    2.3e-05   25.0   2.2    2.8  3  LprI         Lysozyme inhibitor LprI
     0.0013   18.9   0.0       0.95    9.6   0.0    2.5  2  T3SchapCesA  Type III secretion system filament chaperone Ces
  ------ inclusion threshold ------
      0.017   14.5   1.1          4    6.7   0.1    2.2  2  DctP         Bacterial extracellular solute-binding protein, 
      0.041   11.8   0.0        1.4    6.8   0.4    2.7  2  Prominin     Prominin


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.9   7.7e-16   2.8e-12       1      63 []       5      62 ..       5      62 .. 0.97
   2 ?   -1.6   0.0      0.85     3e+03      44      57 ..     305     318 ..     295     321 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 7.7e-16
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +yY+iLg+s +a+++ I +aY+ l +ky   k+  +p+a+++  +i +Aye+Lsdp kR++YD
  EGE27810.1  5 TYYDILGISLSADTEIIDAAYHALTKKY---KH--NPNAAHRLVQIRQAYETLSDPIKRADYD 62
                69**************************...66..9**************************9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.85
                 HHHHHHHHHHTSHH CS
        DnaJ  44 keineAyevLsdpe 57 
                   in+ ++ Lsd++
  EGE27810.1 305 AHINAVWDELSDET 318
                 67999*******97 PP

>> LprI  Lysozyme inhibitor LprI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.97   3.5e+03      28      57 ..      22      48 ..      11      67 .. 0.60
   2 !   16.5   1.2   2.8e-06      0.01      12     103 .]     177     256 ..     170     256 .. 0.83
   3 !   25.0   2.2   6.3e-09   2.3e-05      17     103 .]     297     370 ..     290     370 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.97
                HHHHHHHHHHHHH.TT....HHHHHHHHHHH CS
        LprI 28 nkaykalkeekek.kavssearkaLkdaqra 57
                ++ay al     k  + +++a+ +L++  +a
  EGE27810.1 22 DAAYHALT----KkYKHNPNAAHRLVQIRQA 48
                56666666....2223444444455444333 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.8e-06
                 ..HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT....HHHHHHHHHHHHHHHHHHHHHHHTTTS-TTSHHH....HHHHHHHHHHHHHHHHHHH CS
        LprI  12 a.nqCasaalkaadaeLnkaykalkeekekkavssearkaLkdaqraWikyRdaeCalakspakegsgaggsmeplayasClarltqeRiaeL 103
                 a ++ a aa+ aa  ++n+++++l          +  +++L+d+qr     R+  C+++++   +  ++      +a+ +C++    eR++ L
  EGE27810.1 177 AsYEHAHAAYLAAVNRINAVWNNLP---------KTIQDELRDEQRSINSTREEVCKAQAASQYSHPMDI----DTARYQCEVPRLDERTETL 256
                 35888999*************7666.........68899*****************88877777766666....7999999999999999876 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 6.3e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHTT....HHHHHHHHHHHHHHHHHHHHHHHTTTS-TTSHHH....HHHHHHHHHHHHHHHHHHH CS
        LprI  17 saalkaadaeLnkaykalkeekekkavssearkaLkdaqraWikyRdaeCalakspakegsgaggsmeplayasClarltqeRiaeL 103
                  a +++a a +n+++++l+         +e+++ L+d+qra  + R+++C++ ++   ++++++    ++a+  C+++l  eR++eL
  EGE27810.1 297 HALYDDAVAHINAVWDELS---------DETQSLLRDEQRAINADRERHCQVNAQNTYNNRHDQ----TVARYLCEVALLYERAEEL 370
                 5678889999999998888.........466778****************98888777777777....8****************98 PP

>> T3SchapCesA  Type III secretion system filament chaperone CesA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0024       8.6      29      78 ..      16      68 ..      10      84 .. 0.75
   2 !    9.6   0.0   0.00027      0.95      56      86 ..     286     315 ..     276     321 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0024
  T3SchapCesA 29 aefdvvkesvnilsekaktdpqaaeklnkliegy.tyge..erklydsalski 78
                 a+ +++  +   l++k k +p+aa +l ++ + y t  +  +r  yds l   
   EGE27810.1 16 ADTEIIDAAYHALTKKYKHNPNAAHRLVQIRQAYeTLSDpiKRADYDSWLQMN 68
                 67789999999****************99999883333322577788877655 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00027
  T3SchapCesA  56 nkliegytygeerklydsalskieklietlk 86 
                  n  +egyt  e   lyd a+++i+ + + l+
   EGE27810.1 286 N-HLEGYTPSEAHALYDDAVAHINAVWDELS 315
                  4.46*******************98877765 PP

>> DctP  Bacterial extracellular solute-binding protein, family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0013       4.8     202     241 ..     181     222 ..     173     243 .. 0.73
   2 ?    6.7   0.1    0.0011         4     199     247 ..     294     342 ..     280     358 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0013
                 EEEEEEEEEEE..HHHHHHS-HHHHHHHHHHHHHHHHHHHHH CS
        DctP 202 hgyldllvlvn..kktwdsLpedlqaileeaakeatelqrkl 241
                 h+ + +l  vn  +++w+ Lp+++q+ l++  +  +    + 
  EGE27810.1 181 HAHAAYLAAVNriNAVWNNLPKTIQDELRDEQRSINSTREEV 222
                 5555555556633689*************9887776555544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0011
                 EEEEEEEEEEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        DctP 199 ltnhgyldllvlvnkktwdsLpedlqaileeaakeatelqrklveelee 247
                   +h++ d +v   +++wd+L++++q+ l++  +  ++   ++ + + +
  EGE27810.1 294 SEAHALYDDAVAHINAVWDELSDETQSLLRDEQRAINADRERHCQVNAQ 342
                 445999999999999**************99888777444444333333 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.027        96     386     443 ..      80     136 ..      18     144 .. 0.69
   2 ?    6.8   0.4   0.00038       1.4     257     328 ..     189     257 ..     180     360 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.027
    Prominin 386 aldavisdlenterssktfddvvekyekyrwliglivcsllllivvililgLlcGilG 443
                  ++++ s +++t ++     ++ +k + + wl+gl+++++ ++i+  ++++   G++G
  EGE27810.1  80 GTQTTHSPIQTTDDYRPHEPPKPKKSSLTSWLVGLLIAMIAVVILAYFLVS-SAGFFG 136
                 455566778888888888888899999999999999998777776655544.556666 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00038
    Prominin 257 qvnklekeLrksgsqLrdglrgvkrdlnqalsnlCqseeCskilssleiekldtskcldqlpnvdevleale 328
                 +vn+         ++++d lr+ +r++n++ +++C+++  s+ ++ ++i   dt +   ++p +de  e+l+
  EGE27810.1 189 AVNRINAVWNNLPKTIQDELRDEQRSINSTREEVCKAQAASQYSHPMDI---DTARYQCEVPRLDERTETLR 257
                 555555555566678999******************8888888888877...88888888899998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1077  (0.0600703); expected 358.6 (0.02)
Passed bias filter:                      791  (0.0441185); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2547.08
//
Query:       EGE27811.1  [L=717]
Description: multifunctional fatty acid oxidation complex subunit alpha [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-61  206.7   0.6    2.6e-61  206.7   0.6    1.7  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
    7.8e-43  146.6   0.1    1.5e-42  145.6   0.1    1.5  1  ECH_1          Enoyl-CoA hydratase/isomerase
    9.9e-31  106.2   1.1    5.5e-24   84.6   0.2    2.8  2  3HCDH          3-hydroxyacyl-CoA dehydrogenase, C-terminal do
    7.4e-22   78.3   0.0    1.2e-21   77.6   0.0    1.3  1  ECH_2          Enoyl-CoA hydratase/isomerase
     0.0011   19.2   0.2     0.0029   17.8   0.2    1.7  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.053   13.5   0.7       0.91    9.5   0.0    2.9  3  Peptidase_S49  Peptidase family S49


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.3   6.8e+03      22      66 ..       7      48 ..       4      58 .. 0.63
   2 !  206.7   0.6   8.6e-65   2.6e-61       2     180 .]     320     498 ..     319     498 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.3
                T-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHC CS
     3HCDH_N 22 gleVvlvdiseealekalekieksleklvekgklkeeeveaalar 66
                +++V  +d ++ +++   ++  +s++k+ +k   +    ++a++ 
  EGE27811.1  7 NIQVDFFDQTQGIVQFHFNATDESVNKFDRKTTQE---YQEAVTV 48
                67788888888888888888888777775544433...3344443 PP

  == domain 2  score: 206.7 bits;  conditional E-value: 8.6e-65
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfael 100
                  av+GaG+mG gia+++a +gl++ + di++++l+ +++++ k l+k v +gk + ++++++l+ i++t ++ ++ ++d+viEavvEn ++K++v+ e+
  EGE27811.1 320 AAVLGAGIMGGGIAYQAAVKGLPIIMKDIQAKQLDLGMNEAGKLLSKEVLRGKSTPAKMAQTLSHIRPTLNYGDFGEVDIVIEAVVENPTIKEAVLSEV 418
                 79************************************************************************************************* PP

                 HCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEECS- CS
     3HCDH_N 101 ekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvvkdv 180
                 e ++k+dailasnTS++si++la+alkrpe+++g+HFfnP++ m+LvEv+rgekTs+ ++at+v+la+k+gktp+vv+d+
  EGE27811.1 419 EGLVKQDAILASNTSTISITRLANALKRPENFVGMHFFNPVHRMPLVEVIRGEKTSDIAIATTVALAQKMGKTPIVVNDC 498
                 ******************************************************************************96 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   0.1   5.2e-46   1.5e-42       3     191 ..      16     208 ..      14     245 .. 0.86

  Alignments for each domain:
  == domain 1  score: 145.6 bits;  conditional E-value: 5.2e-46
                 ETTEEEEEE--C.GCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHHHHH...CCHHHHHHHHHHSSSEEEEEE-S CS
       ECH_1   3 eagvaviklnrP.eavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeekakqallk...eevlelwtklytvpkpviaavnG 97 
                  +g+++  +n   e vN ++ ++++E  +a   le+   +++ ++t+g  +F aGad++e +e   + +++++     +++ +++  ++p p +aa+nG
  EGE27811.1  16 TQGIVQFHFNATdESVNKFDRKTTQEYQEAVTVLENRDDIQGLIVTSGKSVFIAGADITEFTEYFSRSKDEIEawlLDINHIFNRFEDLPFPKVAAING 114
                 6788888888642789********************************************9997764444444111455667999************** PP

                 EEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHH CS
       ECH_1  98 aaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaekla 191
                 aa+gGG+e+al+cD+++a+ +a++gl+e+klG++pg+gg+ +l+r +G   A e++ +gk ++++ealk Glvd+vv++e l++ a  l++k +
  EGE27811.1 115 AALGGGCEMALVCDYRVAGISAQIGLPETKLGIFPGFGGSVRLPRLIGIDNALEAIATGKAYRPDEALKLGLVDAVVADELLEQAAADLVKKCL 208
                 **************************************************************************************99999876 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.2   1.8e-27   5.5e-24       1      97 []     500     595 ..     500     595 .. 0.97
   2 !   19.4   0.0     4e-07    0.0012       3      81 ..     630     710 ..     630     715 .. 0.74

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 1.8e-27
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTH.GGHH-HHHHHHHHTT--BGGGTBSSSBC CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelger.ayapsplleklveagrlgrktgkgfyky 97 
                 GF vnRvl+p++  +  lv+eg a++ +iD++m++ +G+pmGp  lld+vg+d++ ++++v+ae++++r +  ++  ++ ++e++rlg+k+g gfy+y
  EGE27811.1 500 GFLVNRVLFPYFGAFDLLVKEG-ADFVSIDKTMEK-FGWPMGPAYLLDVVGMDTGVHAAKVMAEGFPDRmKPDYKGATQLMFEHERLGQKNGVGFYQY 595
                 9*********************.************.*********************************9777779********************98 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 4e-07
                 THHHHHHHHHHHHHHHHHTT.SS-HHHHHHHHHHHHHHS...SCHHHHHHHHHHHHHHHHHH...HHHHHTTTHGGHH-HHHHHHH CS
       3HCDH   3 vvnRvlapllneavrlveeg.vaspediDaamrlglGlp...mGpfelldlvgldvakkile...vlaeelgerayapsplleklv 81 
                 + +R+++++ ne+vr++e++ vasp++ D am  g+G+p    Gp + +d +g+    +  +   +l +     ay+++  l++++
  EGE27811.1 630 IIDRMMIAFCNETVRCLEDNiVASPAEADMAMIMGVGFPpfrGGPCRYIDQIGVANYVALCDkyaYLGK-----AYEAPAKLRDMA 710
                 578****************94589*************997767*********99776666652222222.....333344445555 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   4.1e-25   1.2e-21      10     231 ..      29     239 ..      23     313 .. 0.81

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 4.1e-25
                 GGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEETHHHHHHTT CS
       ECH_2  10 kalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmGgGvGlsvh 108
                 +++N  + +  ++ +ea++  e+ d+++ +++++ g+  f AG D+ +++e  +++k+e e+   +  ++ ++ +++p p va ++G ++GgG+ +++ 
  EGE27811.1  29 ESVNKFDRKTTQEYQEAVTVLENRDDIQGLIVTS-GKSVFIAGADITEFTEYFSRSKDEIEAWLLDINHIFNRFEDLPFPKVAAINGAALGGGCEMALV 126
                 6789999999**********************99.889*****************8877678888888999999999********************** PP

                 SSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT........--------... CS
       ECH_2 109 gsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLaelessdeeaveevleelaeea 206
                 + +rv+  ++++  PEt++G+fP  Ggs  L+rl g   +l    TG+  +  +al++gl + +v +e le+ +++L +           +l ++  +a
  EGE27811.1 127 CDYRVAGISAQIGLPETKLGIFPGFGGSVRLPRLIGiDNALEAIATGKAYRPDEALKLGLVDAVVADELLEQAAADLVKK---------CLLGKFDWQA 216
                 **********************************88788888889**************************999999884.........2333333333 PP

                 ...----SHHHHHHHHHHHT.-S-T CS
       ECH_2 207 eeeeeeselaekreaidrlfsadsv 231
                 +++e+  ++  k ++++++++ +s 
  EGE27811.1 217 KRQEK--QVPVKLNQLEQAMAFNSA 239
                 32222..222223344444433333 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   9.8e-07    0.0029       3     102 ..     321     442 ..     319     455 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 9.8e-07
                    EEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT........EEE-SSHHHHHHHC...............SEEEE-SSSHHHHHHHHHS CS
  NAD_binding_2   3 gfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg........akaaesieelvasl...............dvvitmvkagkavdevieg 75 
                    +++G G+MG  +a + + +g  +++ + ++++++  ++e         +++ +++++++++l               d+vi  v +++ ++e + +
     EGE27811.1 321 AVLGAGIMGGGIAYQAAVKGLPIIMKDIQAKQLDLGMNEAgkllskevLRGKSTPAKMAQTLshirptlnygdfgevDIVIEAVVENPTIKEAVLS 416
                    89****************************9999999887799999998888888888888888888889999**999999999888888888888 PP

                    HCCC--TT-EEEE-S---HHHHHHHHH CS
  NAD_binding_2  76 llealkkgdilidgstsspedtrelak 102
                     +e l k+d ++ + ts ++ t +la+
     EGE27811.1 417 EVEGLVKQDAILASNTSTISIT-RLAN 442
                    7777777777766555555444.3444 PP

>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.81   2.4e+03       8      40 ..     107     139 ..     103     140 .. 0.87
   2 ?    9.5   0.0    0.0003      0.91     112     148 ..     165     201 ..     151     206 .. 0.80
   3 ?    0.3   0.0       0.2   6.1e+02      41      67 ..     293     319 ..     281     328 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.81
                    -EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE CS
  Peptidase_S49   8 PvvasaenvaaSggYylasaadkivanpstivg 40 
                    P va +++ a  gg  +a ++d+ va  s+ +g
     EGE27811.1 107 PKVAAINGAALGGGCEMALVCDYRVAGISAQIG 139
                    668889999999*************99888887 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0003
                    HHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHH CS
  Peptidase_S49 112 eqvdkiAegrvltgqqAlklgLvdelgtvddavaele 148
                    +++++iA+g+ +  ++AlklgLvd +   + + + ++
     EGE27811.1 165 NALEAIATGKAYRPDEALKLGLVDAVVADELLEQAAA 201
                    57899*******************9976554444444 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.2
                    ---EEEEEEE-HHHHHHTT-EEEEEES CS
  Peptidase_S49  41 siGvitqllnlenlldklgvevqvvka 67 
                    ++G++++  ++++l++k+  ++q++k 
     EGE27811.1 293 LVGLFLNDQTVKKLAKKHSQNAQTIKQ 319
                    689***************999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4821.05
//
Query:       EGE27812.1  [L=390]
Description: 3-ketoacyl-CoA thiolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-80  268.2   2.2    9.5e-80  267.7   2.2    1.2  1  Thiolase_N     Thiolase, N-terminal domain
    2.7e-46  156.2   0.5    5.3e-46  155.3   0.5    1.5  1  Thiolase_C     Thiolase, C-terminal domain
    0.00035   20.2   2.0     0.0006   19.5   0.7    1.9  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
      0.035   13.9   0.6         10    6.0   0.1    2.6  2  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.7   2.2   2.1e-83   9.5e-80       1     259 [.       9     257 ..       9     258 .. 0.98

  Alignments for each domain:
  == domain 1  score: 267.7 bits;  conditional E-value: 2.1e-83
                 EEEEEEEEE--EE.TTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCT.TSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigk.fggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqa.gegqniarqaalkagipeevpavtvnkvcsSglkavalaaq 97 
                 vviv+++rt++gk ++g+++ ++a++L+a++++al+++  ++p+e+++vi+G+v q+ ++g+niar aal ag+p++v+a+tvn++c+S+++a+++aa 
  EGE27812.1   9 VVIVDGVRTAMGKtKNGMFRHVRADDLSAKLIQALIARSDINPSELEDVIWGCVNQTlEQGWNIARYAALLAGVPKTVAAQTVNRLCGSSMQALHTAAA 107
                 8************99************************************************************************************ PP

                 HHHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTT CS
  Thiolase_N  98 siaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkde 196
                 +i++ + d++++gGvE+m+++++++ +d + +++ + +ka++++              Gltae+l +  +i+Reeqd f v+sh+ka+aa++ag+F++e
  EGE27812.1 108 QIMTNQGDMFIIGGVEHMGHVSMMHGVDPNPKASKHYAKASNMM--------------GLTAEMLGRLNGITREEQDTFGVHSHKKAWAATQAGRFDNE 192
                 **************************999988888888888776..............***************************************** PP

                 BE-EEEEESSSE.EEE-S-TTS-TT--HHHHHTS-BSSSTT.SS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 197 ivPvkvkgkkgk.ktvdkdeairsevtaekLaklkpaFkke.GtvtAgnasqisDGaaavllmse 259
                 iv v+ ++++g+ + ++ de ir+++++e+ ++l+p+F+ + GtvtAg+as +sDGa+a+l+ms+
  EGE27812.1 193 IVGVEGHDSEGNlQLCTVDEVIRPDANLEAFQALRPVFDPKnGTVTAGTASALSDGASAMLIMSA 257
                 ***************************************999*********************97 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.3   0.5   1.2e-49   5.3e-46       1     123 []     265     389 ..     265     389 .. 0.96

  Alignments for each domain:
  == domain 1  score: 155.3 bits;  conditional E-value: 1.2e-49
                 ---SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G..GGBSTT--HHHH-B-TTTHHHHHHHHHHHHH CS
  Thiolase_C   1 lkplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl..ekvNvnGGaialGHPlGasGaRivvtllsel 97 
                 lkp a+ir +a++g+d++i+g+gP++a++k lk+agl+++di+ +E+nEAFaaq L+v+k ldl    + vN nGGaialGHPlG+sGaRi++tll+ +
  EGE27812.1 265 LKPRARIRGMAVAGCDAAIMGYGPVPATQKSLKRAGLNLSDIQTIELNEAFAAQGLSVLKGLDLLDkqDIVNHNGGAIALGHPLGCSGARITTTLLNVM 363
                 5899***********************************************************8653488***************************** PP

                 HHCTTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C  98 kkeggklgvaalCigggqgvalviek 123
                 ++++++lg+a++Cig gqg++++ie+
  EGE27812.1 364 EQQDTQLGLATMCIGLGQGISTIIER 389
                 ************************96 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.7   1.3e-07    0.0006     170     221 ..      90     142 ..      85     155 .. 0.85
   2 ?   -1.5   0.0      0.34   1.5e+03      68     107 ..     228     267 ..     212     318 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
                    EEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTT.BB- CS
  ketoacyl-synt 170 tvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaag.lls 221
                    tv   C Ss  a+h a  ++++++ d+ + GGve + + + + g +    +++
     EGE27812.1  90 TVNRLCGSSMQALHTAAAQIMTNQGDMFIIGGVEHMGHVSMMHGVDPNPkASK 142
                    66667*********************************999999887775554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.34
                    TEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS-H CS
  ketoacyl-synt  68 ddfdpeffgispreaeamdpqqrllleaawealedagltp 107
                      fdp+   +++  a a++  +  +l  +++  +d gl+p
     EGE27812.1 228 PVFDPKNGTVTAGTASALSDGASAMLIMSAQKAKDLGLKP 267
                    5555555555555555555555555555555556666655 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0023        10       3      35 ..      91     123 ..      90     131 .. 0.81
   2 ?    5.6   0.0    0.0032        15      46      65 ..     239     258 ..     224     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0023
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigae 35 
                  +n  C + ++al++A+a i +++    ++ g e
   EGE27812.1  91 VNRLCGSSMQALHTAAAQIMTNQGDMFIIGGVE 123
                  5778****************9987766665555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0032
                  HHHHTTB-EEEEEEEEEEES CS
  ACP_syn_III  46 rstavlfGDGAgAvvlease 65 
                    ta  ++DGA A+++   +
   EGE27812.1 239 AGTASALSDGASAMLIMSAQ 258
                  678889********998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2997.48
//
Query:       EGE27813.1  [L=131]
Description: hypothetical protein EA1_00440 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 961.57
//
Query:       EGE27814.1  [L=59]
Description: hypothetical protein EA1_00445 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 449.13
//
Query:       EGE27815.1  [L=109]
Description: patatin [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 819.08
//
Query:       EGE27816.1  [L=88]
Description: alpha-beta hydrolase family esterase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-10   40.1   3.2    7.2e-10   39.4   3.2    1.3  1  Patatin          Patatin-like phospholipase
  ------ inclusion threshold ------
      0.042   13.5   0.0      0.047   13.4   0.0    1.1  1  Glyco_trans_4_3  Glycosyl transferase family 4 group
       0.17   11.6   0.0       0.18   11.5   0.0    1.1  1  Phage_G          Major spike protein (G protein)
       0.19   11.2   0.3       0.25   10.8   0.3    1.1  1  Acyl_transf_1    Acyl transferase domain


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   3.2   1.6e-13   7.2e-10       1      38 [.      44      80 ..      44      87 .. 0.94

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 1.6e-13
     Patatin  1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGA 38
                Lvl+GGG+rg++++ga++ L ++ g+r+d+++GtS GA
  EGE27816.1 44 LVLGGGGMRGFAHIGAIESL-EAHGIRPDMVVGTSWGA 80
                8*******************.****************9 PP

>> Glyco_trans_4_3  Glycosyl transferase family 4 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     1e-05     0.047      47      76 ..      51      79 ..      30      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1e-05
  Glyco_trans_4_3 47 lrgeavaraaeeLkkeGfvPDvivaHsgwG 76
                     +rg a + a+e+L+++G++PD++v+  +wG
       EGE27816.1 51 MRGFAHIGAIESLEAHGIRPDMVVGT-SWG 79
                     68999999****************96.466 PP

>> Phage_G  Major spike protein (G protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     4e-05      0.18      20      59 ..      18      57 ..      10      74 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4e-05
                --EE--BSS-BBSS--BSSEEEEEEEEEEE-SEEEEEEEE CS
     Phage_G 20 ltsvtpassapvlqtpkatsstlyfdsltvnagnggflhc 59
                 +s tp+s+ap l tpka  +   +  +    g  gf h 
  EGE27816.1 18 YASATPSSTAPSLVTPKADKTRPVVALVLGGGGMRGFAHI 57
                5799**************8876665555555666777775 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   5.6e-05      0.25      71      93 ..      57      79 ..      54      85 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.6e-05
                   HHHHHHHHHTT-TTSEEEE-TTH CS
  Acyl_transf_1 71 ialaellkskGvrpaavvGHSlG 93
                   i+++e l++ G rp++vvG S G
     EGE27816.1 57 IGAIESLEAHGIRPDMVVGTSWG 79
                   899******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 715.65
//
Query:       EGE27817.1  [L=63]
Description: hypothetical protein EA1_00460 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.071   12.9   0.1       0.14   11.9   0.1    1.5  1  zinc_ribbon_12  Probable zinc-ribbon domain


Domain annotation for each model (and alignments):
>> zinc_ribbon_12  Probable zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.1e-06      0.14       7      26 ..      16      35 ..      15      37 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.1e-06
  zinc_ribbon_12  7 vvCsnCfelLqlPkkflllk 26
                    + C+ C e+Lq+ +++l++k
      EGE27817.1 16 ILCHDCVEILQIFTNILQFK 35
                    78*********988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 482.29
//
Query:       EGE27818.1  [L=243]
Description: phosphoadenosine phosphosulfate reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-35  122.1   0.0      3e-35  121.8   0.0    1.1  1  PAPS_reduct      Phosphoadenosine phosphosulfate reductase fa
  ------ inclusion threshold ------
       0.12   11.6   0.0       0.16   11.3   0.0    1.1  1  Glyco_transf_52  Glycosyltransferase family 52


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   3.3e-39     3e-35       7     173 ..      47     216 ..      41     217 .. 0.90

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 3.3e-39
                  -SSCTCHHHHHHHHHHCTTHEEEEEE-STB-HHHHHHHHHHHHHT.T-EEEEEE-SCHHHHHHHHHH-S-THHHC.....HHHHHHTHHHHHHHHHCT CS
  PAPS_reduct   7 sgGkdslVllhLalkafkpvpvvfvdtghefpetiefvdeleery.glrlkvyepeeevaekinaekhgsslyee.....aaeriaKveplkkaLekl 98 
                  s  ++++V+ + + + +   +++ ++tg+   et++++d ++  y  +++k+yep     +  +a+    ++ye+      ++ i+Kvepl++aL + 
   EGE27818.1  47 SLQAEDMVITDALANSQLSTEIFILQTGRLNAETLKLIDIVKACYlTINFKTYEPHPHAVADYVANHGLNAFYESgdlrkLCCFIRKVEPLNRALVDA 144
                  5556666666655555555589999********************************999999999999999*99****99************99888 PP

                  TECEEE----CCCTTTTTTSSSEEECTTT-SCEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT-SS--BCTTB- CS
  PAPS_reduct  99 dedalltGaRrdesksraklpiveidedfekslrvfPllnWteedvwqyilrenipynpLydqgfrsiGcvpctg 173
                  d  a+ltG+Rr++s +r +l++ e+d +     + +P+++W+e+dvw+yil++nip n+Ly qg+ siGc pct 
   EGE27818.1 145 D--AWLTGQRREQSVTRTELNLAETDLARG-IAKYNPIFDWQETDVWAYILTKNIPFNELYHQGYPSIGCEPCTM 216
                  8..*************************66.99999*************************************97 PP

>> Glyco_transf_52  Glycosyltransferase family 52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.7e-05      0.16     171     218 ..      60     111 ..      17     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.7e-05
  Glyco_transf_52 171 sap....eisiLlgqPlledeeenieliekiikkynilyykpHPRekydlsg 218
                       ++    ei+iL +  l ++  + i++++     +n++ y pHP  + d++ 
       EGE27818.1  60 ANSqlstEIFILQTGRLNAETLKLIDIVKACYLTINFKTYEPHPHAVADYVA 111
                      222333489*******999999*************************99984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1800.46
//
Query:       EGE27819.1  [L=307]
Description: sulfate adenylyltransferase subunit 2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.1e-45  152.8   0.0    1.1e-44  152.5   0.0    1.1  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.0   6.4e-49   1.1e-44       1     173 [.      31     260 ..      31     261 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 6.4e-49
                  CEEEE--SSCTCHHHHHHHHHHCTTH........EEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-THHHCHHHHHHTHHH CS
  PAPS_reduct   1 elvvsvsgGkdslVllhLalkafkpv........pvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgsslyeeaaeriaKvep 90 
                  ++++++sgGkds+Vll La+kaf  +        p+v++dtgh++pe+ief+d+ ++ ++lrl v   e+++a++ +  ++      +  ++ a++++
   EGE27819.1  31 NPALLFSGGKDSVVLLALARKAFAIKgrdvalpfPLVHIDTGHNYPEVIEFRDAQVKTLNLRLVVGHVEDSIAKGTVVLRKE-----TDSRNGAQAVT 123
                  5789*******************98667899999***************************************999999942.....235679***** PP

                  HHHHHHCTTECEEE----CCCTTTTTTSSSEEECTTT-S......................CEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT.... CS
  PAPS_reduct  91 lkkaLekldedalltGaRrdesksraklpiveidedfek......................slrvfPllnWteedvwqyilrenipynpLydqg.... 162
                  l +++e +++dal++GaRrde+k+rak++i++++++f +                       +rvfP++nWte d+wqyi ren+++ ++y ++    
   EGE27819.1 124 LLETIEAYQFDALMGGARRDEEKARAKERIFSFRDEFGQwdpkaqrpelwslynakhhqgeNMRVFPISNWTELDIWQYIARENLELPSIYYAHerev 221
                  ************************************************************************************************** PP

                  ............................-SS--BCTTB- CS
  PAPS_reduct 163 ............................frsiGcvpctg 173
                                              fr++G+++ct 
   EGE27819.1 222 vekggllvpvtpltpkadgdvseirsvrFRTVGDISCTC 260
                  *************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2395.92
//
Query:       EGE27820.1  [L=434]
Description: sulfate adenylyltransferase, large subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-36  125.9   0.1    1.7e-36  125.6   0.1    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    6.1e-06   26.3   0.1    6.7e-05   22.9   0.1    2.6  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00054   20.3   0.7     0.0013   19.1   0.7    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
     0.0011   18.4   0.1      0.042   13.3   0.0    2.4  2  SRPRB        Signal recognition particle receptor beta subuni
     0.0013   18.4   0.1     0.0026   17.4   0.0    1.5  1  Ras          Ras family
  ------ inclusion threshold ------
      0.065   13.1   1.4       0.13   12.2   1.4    1.4  1  GTP_EFTU_D4  Elongation factor Tu domain 4


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.1   5.8e-40   1.7e-36       5     186 ..      11     215 ..       7     325 .. 0.86

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 5.8e-40
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.HHHST..........HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHH CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgeka.eeerv..........lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglr 92 
                  ++++g vD GK+TL++rLly+++a   ++  + +++++          +D l +Ere+giTi++a  +++  t+k+++ + DtPGH+++++++ +g++
  EGE27820.1  11 RFITAGSVDDGKSTLIGRLLYDSKALLTDQLYNlNNTKTagdaidfsvlTDGLLAEREQGITIDVAYRYFS--TAKRKFIIADTPGHEQYTRNMVTGAS 107
                 6899*********************999888886333335789999*************************..************************** PP

                 T-SEEEEEEETTTB........STHHHHHHHHHHHHTTTE.EEEEEESCGST...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB CS
    GTP_EFTU  93 vlDgavlvvdaveG........vepqteevlrlalkegvp.iivfiNKmDrl...kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge 179
                 +++ av+++da++           pqt+++  +++ +++  iiv+iNKmD l   +++++ +v+++k kl        +      ++v++v++Sal+g+
  EGE27820.1 108 TAHAAVVLIDASQIdfgqaevwLLPQTKRHSAILKHLRCShIIVAINKMDLLnfdENKFNTVVRAYK-KL------AAQLDL---QDVKFVPVSALNGD 196
                 ************76677889999*****************9***********997777888777777.77......333333...3699********** PP

                 THH............HHHH CS
    GTP_EFTU 180 gvk............tlle 186
                 ++             tlle
  EGE27820.1 197 NIVhksqntpwyqggTLLE 215
                 9876667777777774443 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   2.2e-08   6.7e-05       4      87 ..      14     127 ..      11     175 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.2e-08
                 EEESTTSSHHHHHHHHH...............T..............STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHH. CS
    MMR_HSR1   4 ivGrpNvGKStLinalt...............g..............ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkafla. 72 
                  +G    GKStLi +l+               +              +   +++++g T+d+ ++ +++ +++++++DtpG  e      + ++++   
  EGE27820.1  14 TAGSVDDGKSTLIGRLLydskalltdqlynlnNtktagdaidfsvltDGLLAEREQGITIDVAYRYFSTAKRKFIIADTPG-HE------QYTRNMVTg 105
                 5788899*********9777777766666665055555666665543467899999************999**********.44......344444441 PP

                 HHCTSEEEEEEETT.......T CS
    MMR_HSR1  73 leeadlillvvdas.......e 87 
                    a+++++++das       e
  EGE27820.1 106 ASTAHAAVVLIDASqidfgqaE 127
                 4447999999998844444321 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.7   4.2e-07    0.0013       6      59 ..     256     304 ..     254     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.2e-07
                  EEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEE CS
  GTP_EFTU_D2   6 grvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGviva 59 
                  gr++sG + +Gd+vr+   ++   + ++ i+ +  +++ +  a +g+++ + + 
   EGE27820.1 256 GRIESGSVSVGDKVRV--EPS---GRISHIQEIISPNGVVSRASVGEQITITLT 304
                  9***************..887...445***********8888888887776655 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.024        71       5      28 ..      11      34 ..       8      49 .. 0.86
   2 !   13.3   0.0   1.4e-05     0.042      18      85 ..      54     118 ..      44     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.024
                EEEEE-STTSSHHHHHHHHHHSS- CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsv 28
                +++ +G  d GK +l+ rL+ ds+
  EGE27820.1 11 RFITAGSVDDGKSTLIGRLLYDSK 34
                6899***************99965 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHSS---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEET CS
       SRPRB  18 slftrLttdsvkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDS 85 
                   f  Lt +   +    +   +a+++ s+ + k+ ++D PGhe+   ++++     s++++ v ++D+
  EGE27820.1  54 IDFSVLTDGLLAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMVTG---ASTAHAAVVLIDA 118
                 5577888888888888889999***************************999...4555666666664 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   8.8e-07    0.0026      45     149 ..      82     198 ..      58     204 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.8e-07
                 TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHH.HHHHHHST.....TTSEEEEEEETTTGGG......G-SS-HHHHHHHH CS
         Ras  45 gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwv.eeikrvae.....envpivLvGnKvDlee......kravsteegeela 131
                   + k+ i DT G e++++   +  ++a++++++ d + +  f +++ w+  + kr+       +  +i++  nK+Dl +      + +v++ +  +  
  EGE27820.1  82 TAKRKFIIADTPGHEQYTRNMVTGASTAHAAVVLIDAS-QIDFGQAEVWLlPQTKRHSAilkhlRCSHIIVAINKMDLLNfdenkfNTVVRAYKKLAAQ 179
                 5567889************99999*********99965.5679999977537788887788775445667777******99988766666665554444 PP

                 HHHT.SEEEEEBTTTTCTH CS
         Ras 132 kelg.lkfletSAktnenv 149
                  +l+ +kf+ +SA +  n+
  EGE27820.1 180 LDLQdVKFVPVSALNGDNI 198
                 455569********99997 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.4   4.3e-05      0.13      24      83 ..     257     313 ..     255     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
                  EEEEEEEETT-EEEETTE.EEEEEEEEEETTEEESEEETT-EEEEEEESS-TTTS--TT- CS
  GTP_EFTU_D4  24 evlgGvikpgvklikedGrevGeilqiqdkgkkleeakaGqevaisiegkivGrqikegd 83 
                  ++ +G + +g k+  e   ++ +i++i + +  ++ a+ G+++ i++ ++i   +i  gd
   EGE27820.1 257 RIESGSVSVGDKVRVEPSGRISHIQEIISPNGVVSRASVGEQITITLTDDI---DISRGD 313
                  68899999999996665559******************************9...666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3163.44
//
Query:       EGE27821.1  [L=698]
Description: ATP-dependent DNA helicase RecG [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-25   87.3   0.0    1.3e-24   86.7   0.0    1.3  1  RecG_wedge       RecG wedge domain
    1.2e-21   77.1   0.0    1.3e-17   64.1   0.0    2.4  2  Helicase_C       Helicase conserved C-terminal domain
      2e-19   70.0   0.4      2e-18   66.7   0.1    2.1  2  DEAD             DEAD/DEAH box helicase
    9.8e-12   45.2   0.0    1.8e-11   44.4   0.0    1.4  1  ResIII           Type III restriction enzyme, res subunit
      7e-06   25.9   3.0    8.2e-06   25.7   0.9    2.1  2  AAA_30           AAA domain
    1.6e-05   24.8   0.0    3.8e-05   23.6   0.0    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    8.2e-05   22.0   0.0    0.00017   21.0   0.0    1.4  1  SecA_DEAD        SecA DEAD-like domain
  ------ inclusion threshold ------
      0.013   14.4   0.0       0.04   12.8   0.0    1.8  2  DUF2791          P-loop Domain of unknown function (DUF2791)
      0.048   13.8   0.0      0.093   12.8   0.0    1.4  1  RC-P840_PscD     Photosystem P840 reaction centre protein Psc
       0.12   12.6   0.2         73    3.6   0.0    3.7  4  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> RecG_wedge  RecG wedge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   7.3e-28   1.3e-24       5     164 .]      15     169 ..      11     169 .. 0.92

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 7.3e-28
  RecG_wedge   5 akgvGekrekiLkklgietiedllyyfPrdyedrrkivpiseikedekvtvkgklvnvekkkissltiisavlsdgisqvlLkWfnqeyikkklktlke 103
                 + gvG++ +  L++lgi+ i d+l ++Prdyedr +++ i++++++  v+v g ++ vek +++    +s  l+d ++++ L++f   y +    ++++
  EGE27821.1  15 LSGVGQALAGRLAELGIHRIFDMLLHLPRDYEDRSRVIAIKDVSHGMSVLVAGVVTWVEKNRTG----LSVTLEDATGEITLRFFH-TYPSLLTTMMVG 108
                 679******************************************************9988765....6888***********996.69888888899* PP

  RecG_wedge 104 kevlvtGlvkkgefGaleiknPeieeitgeqere..ilPvysLtegisqkelrkivkenisav 164
                  ++ v+G +k g +G+ +++ P+ + +tg+++ e  +lP+y+  +gi+q++lr++v+  ++av
  EGE27821.1 109 AKITVFGEIKVGRYGT-QMSHPDYH-LTGTKKFEsgLLPIYPTIKGINQNKLRQLVRLALTAV 169
                 ***************7.79*****9.7777777777********************9988876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00033      0.59      18      75 ..     325     386 ..     310     406 .. 0.74
   2 !   64.1   0.0   7.4e-21   1.3e-17      11     110 ..     482     591 ..     471     592 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00033
                 EEEEEESSHHHHHH.....HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG CS
  Helicase_C  18 kilifvntidrlek.....vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdv 75 
                 ++ ++++t   +e+      k+    +   gi v  l g+ +++er ++l++ +k+++++++ t +
  EGE27821.1 325 QVAVMAPTEILAEQhlinfQKW----FeplGIGVGWLAGKQTAKERTAALDAIRKNQVQIVVGTHA 386
                 5555566655444332222333....14559*******************************9987 PP

  == domain 2  score: 64.1 bits;  conditional E-value: 7.4e-21
                 HHTTTTSEEEEEESSHH.....HHHH......HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSS.H CS
  Helicase_C  11 kleeeggkilifvntid.....rlek......vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprn.v 97 
                 ++ + g++++ +++ ++     +          + l  + +i++  +hg++++ ++++++++f++g++d+Liat+v+e G+d+p+++l+++ ++ r  +
  EGE27821.1 482 NNCQAGKQAYWVCPLVEessalD--VqsaqltYEDLSDRLDIRTGLIHGKMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNASLMVIENAERLgL 578
                 44578999999999999554332..2433333333344449******************************************************655* PP

                 HHHHHHHTTSSST CS
  Helicase_C  98 tsyiqriGRtgRa 110
                 ++++q +GR+gR+
  EGE27821.1 579 SQLHQLRGRVGRG 591
                 ************7 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.1   1.1e-21     2e-18       2     170 ..     277     436 ..     276     442 .. 0.81
   2 ?    1.1   0.0      0.16   2.8e+02      67     105 ..     512     554 ..     475     584 .. 0.66

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 1.1e-21
                 HHHHHHHHHHHTTCEEE........EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvl........vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqls 92 
                 + Q+++i++++++  +         +++++G+GKTl++++ ++ ++     ++g ++ +++Pt+ Laeq+l n++k+++++++ v ++ g+++a++  +
  EGE27821.1 277 AAQKRVIDEAVSD--MAtsrpmlrlIQGDVGAGKTLVAAMTACYAL-----DSGWQVAVMAPTEILAEQHLINFQKWFEPLGIGVGWLAGKQTAKERTA 368
                 6778888887733..2222333466******************887.....99*****************************99999999999999999 PP

                 HHH....TTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kld....ngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 +ld    n+v+ivvgt+  + d +      + ++ ++++DE +r+  +++ +  n+ ++         +     ++++AT+ 
  EGE27821.1 369 ALDairkNQVQIVVGTHALFSDTVV-----FAKLGLVIIDEQHRFGVEQRLRLTNKGVSGG------APH---QLAMTATPI 436
                 994444377*********9999554.....99**************998888887766655......233...477777765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.16
                 HHHHTTTSTSEEEEEETTSSHHHHHHHHH...TT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.xxxxxxxx RF
        DEAD  67 lkkfkkyidlrvlliiggvaardqlskld...ng.vdivvgtp 105
                 ++ + + +d+r+ li g+ +a d++++++   +g +d++++t+
  EGE27821.1 512 YEDLSDRLDIRTGLIHGKMKAADKQAVMQafkAGdIDLLIATT 554
                 34444557799999*9999999999999533244799999997 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   9.8e-15   1.8e-11       2     169 ..     273     435 ..     272     437 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 9.8e-15
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B-- CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke....igkkvsgdkkka 96 
                 +el   Q+++i++ ++ +   r    li+   G+GKTlvaa ++ + l +g+  ++ +++p+++l eq l +f+k++++        +gk + +++  a
  EGE27821.1 273 FELTAAQKRVIDEAVSDMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGW--QVAVMAPTEILAEQHLINFQKWFEPLGIGvgwlAGKQTAKERTAA 369
                 678999********9999878888899*************999999999999..9**********************9986446665444444444444 PP

                 ........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---..SEEEEEESS- CS
      ResIII  97 .kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfke..avllglTATp 169
                   ++++++ +i+v t ++l +d              +  ++iiDE Hr+g ++  r  ++ ++     +l++TATp
  EGE27821.1 370 lDAIRKNQVQIVVGT-HALFSDT---------VVFAKLGLVIIDEQHRFGVEQRLRLTNKGVSGgaPHQLAMTATP 435
                 677788888888887.5666666.........5888889************777777666664355*********9 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.9   4.6e-09   8.2e-06       8     109 ..     285     417 ..     274     425 .. 0.71
   2 ?   -1.0   0.0      0.67   1.2e+03      67     118 ..     541     594 ..     513     598 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.6e-09
      AAA_30   8 aavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv.La......eelgi.........eastiakllkrlk......... 81 
                 +av  ++ts+ ++ +++G  G+GKt + +  +  + ++g +v+++Apt+  A++ L       e lgi         +a+                   
  EGE27821.1 285 EAVSDMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQhLInfqkwfEPLGIgvgwlagkqTAKERTAA----Ldairknqvq 379
                 578889999****************9888888888888**************997655666662333222334322222222222....1233366677 PP

      AAA_30  82 ..........grarlepgtllivDEagmvdtkqlaall 109
                           +++ +++  l+i+DE    + +q  +l+
  EGE27821.1 380 ivvgthalfsDTVVFAKLGLVIIDEQHRFGVEQRLRLT 417
                 88888889986566677799999999988888887776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.67
      AAA_30  67 gieastiakllkrlk..grarlepgtllivDEagmvdtkqlaallkaaekagak 118
                  ++a  i+ l+ ++     +++ +++l+++  a  ++ +ql++l  ++ + +ak
  EGE27821.1 541 AFKAGDIDLLIATTVieVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGSAK 594
                 345555555554444773467778899999999999999999999888776665 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.1e-08   3.8e-05       1      74 [.      63     132 ..      63     134 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.1e-08
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrrpggelelkveeie 74 
                      V vaG vt +   +++  ++++l+D tg+i++ +f   + +l+ +  +G  + v+G++k  + g  +++++++ 
       EGE27821.1  63 VLVAGVVTWV--EKNRTGLSVTLEDATGEITLRFFH-TYPSLLTTMMVGAKITVFGEIKVGRYG-TQMSHPDYH 132
                      6789999999..7777789*****************.************************999.999999875 PP

>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.3e-08   0.00017      99     165 ..     304     370 ..     297     388 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 9.3e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD  99 TGEGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerreaY 165
                  G GKtlva+++a+++  +g +v v++  + La++   ++++ +e lG+ vg++  +++++er +a 
  EGE27821.1 304 VGAGKTLVAAMTACYALDSGWQVAVMAPTEILAEQHLINFQKWFEPLGIGVGWLAGKQTAKERTAAL 370
                 699***********9999*****************************************99998875 PP

>> DUF2791  P-loop Domain of unknown function (DUF2791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.3e-05      0.04      33      81 ..     279     327 ..     276     345 .. 0.86
   2 ?   -2.6   0.0         1   1.8e+03       4      66 ..     533     598 ..     530     602 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
     DUF2791  33 eiealledlervaeggaafrfirGeYGsGKtFllqllreralergfvva 81 
                 + ++++e ++++a  + ++r+i+G+ G+GKt ++++ + +al+ g  va
  EGE27821.1 279 QKRVIDEAVSDMATSRPMLRLIQGDVGAGKTLVAAMTACYALDSGWQVA 327
                 6688999***********************************9987654 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1
     DUF2791   4 rereaiinsLraGvVPr.iGleliaVGrereiealledlervaeggaafrfirGeYGsG..KtFll 66 
                 ++++a++++ +aG +   i    i VG++   ++l    ++   g ++++ +rG+ G G  K+F +
  EGE27821.1 533 ADKQAVMQAFKAGDIDLlIATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGsaKSFCV 598
                 677888888888887642567788888888887776544444558888889999876443388865 PP

>> RC-P840_PscD  Photosystem P840 reaction centre protein PscD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.2e-05     0.093      13      93 ..     482     565 ..     475     579 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-05
  RC-P840_PscD  13 nqvrasksgpwsgnavhkaekyfitsak...rdrsgklqleispasgrrklsptkeliekliegeielfvlttqpdiaidlkkk 93 
                   n+ +a k + w    v  +    + sa+    d s++l+++     g+ k +  + +++  ++g+i+l++ tt  ++++d+++ 
    EGE27821.1 482 NNCQAGKQAYWVCPLVEESSALDVQSAQltyEDLSDRLDIRTGLIHGKMKAADKQAVMQAFKAGDIDLLIATTVIEVGVDVPNA 565
                   555566666666666666666666776533257789999999999***********************************9864 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.041        73       9      24 ..     299     314 ..     292     320 .. 0.87
   2 ?    0.8   0.0      0.31   5.6e+02      92     105 ..     397     409 ..     353     431 .. 0.75
   3 ?   -1.5   0.0       1.5   2.7e+03      71     118 ..     469     521 ..     450     537 .. 0.73
   4 ?    2.3   0.0      0.11   1.9e+02      92     117 ..     565     589 ..     535     602 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.041
      AAA_22   9 vvtGesGtGKTtllrr 24 
                 ++ G +G+GKT+++++
  EGE27821.1 299 LIQGDVGAGKTLVAAM 314
                 688*********9975 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.31
      AAA_22  92 ielliiDEaqhlrs 105
                  +l+iiDE +++  
  EGE27821.1 397 LGLVIIDEQHRF-G 409
                 589*******99.4 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.5
      AAA_22  71 erlsseellealeqalrarav..ielliiDEaqhlr..s.eealeeLrsllnl 118
                 +r++++e++e+++++++a +    ++ +++E   l+  s +  +e+L+++l++
  EGE27821.1 469 NRDRRDEVIERIQNNCQAGKQayWVCPLVEESSALDvqSaQLTYEDLSDRLDI 521
                 56788899999999999988877777788888888774356667777777774 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.11
      AAA_22  92 ielliiDEaqhlrseealeeLrslln 117
                  +l++i++a++l    +l +Lr ++ 
  EGE27821.1 565 ASLMVIENAERL-GLSQLHQLRGRVG 589
                 4799********.9999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4878.95
//
Query:       EGE27822.1  [L=215]
Description: cyclic nucleotide-binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-07   29.5   0.0    9.3e-07   28.8   0.0    1.4  1  cNMP_binding  Cyclic nucleotide-binding domain
    0.00071   19.5   0.0     0.0014   18.6   0.0    1.5  1  HTH_6         Helix-turn-helix domain, rpiR family
     0.0028   17.6   0.0      0.011   15.7   0.1    2.0  2  HTH_Crp_2     Crp-like helix-turn-helix domain
     0.0052   16.6   0.0      0.011   15.6   0.0    1.5  1  MarR_2        MarR family
  ------ inclusion threshold ------
      0.045   13.7   0.0      0.074   13.0   0.0    1.4  1  MarR          MarR family


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.6e-10   9.3e-07      11      88 ..      60     138 ..      50     139 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.6e-10
                   E-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHH.HTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding  11 frqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelall.tgeprtatvvAltdsellalprddflellqq 88 
                     +G+  d++ ++l G +++  +s++g  v ++++++Gd +Ge  ++ ++e + ++++++++s ++a++ ++ +  +q+
    EGE27822.1  60 QVAGQVQDHIGVILAGLCKLEYQSDQGSVVNVHFMQEGDGIGEYHAFlGDEVCRYSLQTIEPSIIIAISLAHYEYCCQR 138
                   5679999*************99*****99**************888878899****************99887777766 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.9e-07    0.0014      15      60 ..     167     212 ..     153     213 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.9e-07
                 -HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S- CS
       HTH_6  15 tksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGf 60 
                 t+   + + +i  +p+ a ++s+++l+  ++ S+ +++r+ kkLG 
  EGE27822.1 167 TDGQTRYVRFIETNPKLAARISVSDLSSYLGMSRQMLTRIRKKLGH 212
                 5566777899**********************************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.84     3e+03      27      47 ..       7      27 ..       5      31 .. 0.80
   2 !   15.7   0.1   3.1e-06     0.011      17      45 ..     182     210 ..     159     215 .] 0.79

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.84
                HHHHTTSSHHHHHHHHHHHHH CS
   HTH_Crp_2 27 lAsmlGltretvsrilseLkr 47
                lA +   tr t s+i++++ +
  EGE27822.1  7 LALFADCTRLTDSQIIHKWIQ 27
                777888889999999998865 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 3.1e-06
                 EEEEEHHHHHHHHHTTSSHHHHHHHHHHH CS
   HTH_Crp_2  17 eielpltqeelAsmlGltretvsrilseL 45 
                 ++  +++  +l+s+lG++r+ ++ri ++L
  EGE27822.1 182 KLAARISVSDLSSYLGMSRQMLTRIRKKL 210
                 45668999*****************9998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.1e-06     0.011       4      45 ..     167     210 ..     165     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.1e-06
                 -HHHHHHHHHHHCTTTS..EEEHHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2   4 tpaqarvLaaLgrrpgr..dltvgelarrlglsksavsrilkrL 45 
                 t  q r   ++  +p    +++v++l  +lg+s++ ++ri k+L
  EGE27822.1 167 TDGQTRYVRFIETNPKLaaRISVSDLSSYLGMSRQMLTRIRKKL 210
                 667899999999999758888******************98886 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.1e-05     0.074      17      41 ..     186     210 ..     166     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.1e-05
                 TEEHHHHHHHHTS-HHHHHHHHHHH CS
        MarR  17 plsvseLakklgvskstvtrvldrL 41 
                  +svs+L + lg+s+ ++tr+ ++L
  EGE27822.1 186 RISVSDLSSYLGMSRQMLTRIRKKL 210
                 37888****************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1630.07
//
Query:       EGE27823.1  [L=168]
Description: truncated secretion protein HlyD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-13   48.1   4.8    9.1e-13   47.8   0.2    2.8  3  Biotin_lipoyl_2  Biotin-lipoyl like
    2.8e-05   23.5   3.3    3.3e-05   23.2   3.3    1.2  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
     0.0013   18.5   0.1     0.0023   17.7   0.1    1.4  1  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.029   14.6   0.3      0.049   13.8   0.3    1.4  1  Peptidase_M23    Peptidase family M23
        2.8    8.9  11.6        6.9    7.6   5.6    2.7  2  DUF3235          Protein of unknown function (DUF3235)


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.96   3.4e+03       3      16 ..      44      59 ..      42      61 .. 0.73
   2 !   47.8   0.2   2.5e-16   9.1e-13       1      50 []      60     110 ..      60     110 .. 0.96
   3 ?    1.1   0.3       0.1   3.7e+02      36      49 ..     141     154 ..     139     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.96
  Biotin_lipoyl_2  3 vsIaapv..sGrVaql 16
                     ++I+ ++  +G Va++
       EGE27823.1 44 ITIKNRLsaNGIVAAV 59
                     6777777667888887 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 2.5e-16
  Biotin_lipoyl_2   1 evvsIaapvsG.rVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      e+ ++++++sG  +++++V+ G  VkaG+vLa+lD+r ++ +l+ aea la
       EGE27823.1  60 ETAEVSSQISGvAIERVLVEVGEFVKAGQVLATLDTRTFEQQLSSAEAELA 110
                      5789********************************************986 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.1
  Biotin_lipoyl_2  36 ralqlalaqaeaql 49 
                      +a+++al+qa a++
       EGE27823.1 141 DAYRTALRQALANV 154
                      68999****98886 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   3.3   9.2e-09   3.3e-05       2      89 ..      46     150 ..      45     168 .] 0.72

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 9.2e-09
                 SXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXX................XXX CS
    HlyD_D23   2 lsktlravGtvayderrlarvsarveGw.veklyvnatgdkVkkGqpLaelys....pelvaaqeeyllalkakkklkkke...............lle 80 
                 ++++l+a G va+ e  +a+vs++++G  +e++ v+ +g+ Vk+Gq La+l+     ++l +a++e+ +a +a++k++++                +++
  EGE27823.1  46 IKNRLSANGIVAAVE--TAEVSSQISGVaIERVLVE-VGEFVKAGQVLATLDTrtfeQQLSSAEAELATAVAAQEKAAADLartepllaidavsrqEVD 141
                 567788888888766..58999*****88*******.**************9733336899***********999885543566666666666666555 PP

                 XXXXXXXXX CS
    HlyD_D23  81 aarerLrll 89 
                 a r  Lr+ 
  EGE27823.1 142 AYRTALRQA 150
                 555555544 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   6.4e-07    0.0023       7      46 ..      63     103 ..      57     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.4e-07
                    SSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEE CS
  Biotin_lipoyl   7 miGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeie 46 
                    ++++ +    +++vlv+vG+ Vkagqvla++ +   e +++
     EGE27823.1  63 EVSSQISGVaIERVLVEVGEFVKAGQVLATLDTRTFEQQLS 103
                    5555555446899****************998866655555 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.3   1.4e-05     0.049      18      77 ..      38      98 ..      23     121 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
                   ESSSEEEEEEEEETTTEEEEEEEECTCEEEEEEE..ESEESS-TTEEE-TTCEEEEEBSTSS CS
  Peptidase_M23 18 AaadGtVvfagkkegyGnvviidhgdgystlyah..lskisvkegqkVkaGqvIGtvgstgr 77
                   A+    ++ ++  ++ G v  ++ ++  s+ +    ++++ v++g++VkaGqv++t  ++  
     EGE27823.1 38 AVHPTSITIKNRLSANGIVAAVETAEV-SSQISGvaIERVLVEVGEFVKAGQVLATLDTRTF 98
                   444455544444433344444444443.3333332378899***************986653 PP

>> DUF3235  Protein of unknown function (DUF3235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3     0.025        91      26      60 ..      20      56 ..      14      66 .. 0.62
   2 ?    7.6   5.6    0.0019       6.9      15      52 ..     104     141 ..      88     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.025
                HHHHHHHHHT--HHHHHHHHHHH...HHHHHHHTTT-- CS
     DUF3235 26 taqkavadlaatsdelavDavyd...alkdalakaGia 60
                t+ k  a+ +++++++av av      +k++l+++Gi 
  EGE27823.1 20 TPSK-QAAQNQNAAVMAVEAVHPtsiTIKNRLSANGIV 56
                3333.334455556666666664222688899888885 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0019
                 .S-HHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHH CS
     DUF3235  15 qapApvaaaaataqkavadlaatsdelavDavydalkd 52 
                  a A+ a a+a  +ka+adla+t+  la+Dav  + +d
  EGE27823.1 104 SAEAELATAVAAQEKAAADLARTEPLLAIDAVSRQEVD 141
                 589****************************9766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1372  (0.0765241); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1217.75
//
Query:       EGE27824.1  [L=109]
Description: truncated secretion protein HlyD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-05   25.1   0.0    2.6e-05   24.9   0.0    1.1  1  HlyD_3           HlyD family secretion protein
     0.0086   15.3   0.0       0.01   15.1   0.0    1.1  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
  ------ inclusion threshold ------
       0.17   11.3   0.0       0.21   11.0   0.0    1.1  1  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 


Domain annotation for each model (and alignments):
>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   4.3e-09   2.6e-05      23      93 ..       3      68 ..       1      78 [. 0.87

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.3e-09
      HlyD_3 23 agdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevsl 93
                +g++l++ii +  l+ +a+vp+ad++ i+ +gq++++++  g  +++ g + r+sp + ++++ ++v v+l
  EGE27824.1  3 SGTPLFSIIIDGMLEWQAAVPPADAANIH-VGQTASVEIA-G--RQVIGGVARLSPVT-NDSRDITVHVRL 68
                69**************************8.********96.4..699*********86.446777777665 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.7e-06      0.01     133     199 ..       4      68 ..       1      73 [. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX CS
    HlyD_D23 133 gdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdpetR..tvkvRi 199
                 g++lf+i     +  +a+v+ +++a+++vgq+++v+++   g+++ G v+ ++p+ +  +R  tv+vR+
  EGE27824.1   4 GTPLFSIIIDGMLEWQAAVPPADAANIHVGQTASVEIA---GRQVIGGVARLSPVTND-SRdiTVHVRL 68 
                 56666666666666789******************987...99***********8764.5512555654 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.6e-05      0.21     161     204 ..      19      63 ..      11      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.6e-05
  tRNA_synthFbeta 161 kvefepaehpalhpgrsAeikv.dgkevGvlGelhpevleafdlk 204
                      +  + pa+ +  h g++A++++ +++++G +  l+p + ++ d+ 
       EGE27824.1  19 QAAVPPADAANIHVGQTASVEIaGRQVIGGVARLSPVTNDSRDIT 63 
                      4556789**************96778**********998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 861.58
//
Query:       EGE27825.1  [L=46]
Description: hypothetical protein EA1_00500 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 352.50
//
Query:       EGE27826.1  [L=36]
Description: hypothetical protein EA1_00505 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 282.72
//
Query:       EGE27827.1  [L=181]
Description: hypothetical protein EA1_00530 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-56  190.1   0.7    4.1e-56  190.0   0.7    1.0  1  DUF924    Bacterial protein of unknown function (DUF924)


Domain annotation for each model (and alignments):
>> DUF924  Bacterial protein of unknown function (DUF924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.0   0.7   2.3e-60   4.1e-56       1     180 [.       8     177 ..       8     178 .. 0.98

  Alignments for each domain:
  == domain 1  score: 190.0 bits;  conditional E-value: 2.3e-60
      DUF924   1 vldfWfeeeakekakrwfkkkeefDaeirerfeslleaaaageldewakepegaLaliillDQfpRniyRgtakafatDalAlalakealekgldeele 99 
                 vl+fWf++   +++  wf+k+ efD++i+++f+++le+a+age+++w+ +  g+La+ii+lDQf+Rni+R+t+kaf++D +Al l++ea+     e+l+
  EGE27827.1   8 VLEFWFSK---DAQPLWFAKSFEFDQKISHQFGKVLESATAGECADWRCDILGRLAEIIVLDQFSRNIHRDTPKAFEADGMALVLSQEAIVLPEFESLA 103
                 89******...899*****************************************************************************99999*** PP

      DUF924 100 eaerlffylplmHsEdladqeravelfeelaeeveeeeeeeslkfakkhrdiierFgRyPhRNaaLgResteeEkefLeeg 180
                   er f+++p+mHsE+   +++a++lfe++++       ++++ ++++h++ii++FgRyPhRNa+LgR st +E++fL+++
  EGE27827.1 104 LDERKFMLMPYMHSESKLIHKKAMTLFEQFTD-------ATTVAYERRHKEIIDEFGRYPHRNAILGRVSTTQEQAFLNKP 177
                 *******************************9.......899************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1293.81
//
Query:       EGE27828.1  [L=211]
Description: dephospho-CoA kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-48  165.2   0.1    1.3e-48  165.0   0.1    1.0  1  CoaE      Dephospho-CoA kinase
    2.4e-05   24.9   0.0    6.3e-05   23.5   0.0    1.7  1  AAA_18    AAA domain
    0.00025   21.2   0.1     0.0015   18.7   0.1    2.2  2  AAA_33    AAA domain
  ------ inclusion threshold ------
       0.19   12.0   0.4        0.7   10.1   0.1    2.0  2  AAA_28    AAA domain


Domain annotation for each model (and alignments):
>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.1     3e-52   1.3e-48       2     177 ..       3     187 ..       2     189 .. 0.93

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 3e-52
                 EEEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHTTCCTHHHHHHHHHHHGGGCB.TTSSE-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH CS
        CoaE   2 ivgltGgiasGKstvanlfadlgvpivDaDlvArqvvepgsealkkiveeFgeeildedGeLdReaLrkkvFadpeekkaLnallhPlirreikkelak 100
                 i+gltGgi+sGKs+v++++ ++g+++vDaD++A++++  gs+ l  ++++ g+ +ld++G+ dR+a r +vF+d+++ + Lna++hP+i+++i +el  
  EGE27828.1   3 ILGLTGGIGSGKSAVSDYLGKQGITVVDADIIAHRLTSDGSPLLITLKKALGDWVLDHHGRYDRAAVRARVFSDAQTLDQLNAIIHPAIHQAILDELDC 101
                 89************************************************************************************************* PP

                 --SSEEEEE-TTTTTT.....TGGGGSSEEEEEE--HHHHHHHHHHCCTSTHHHHHHHHHHS--HHHHHHH-S....EEEE-.SSH CS
        CoaE 101 leskyvlldvPLLvEk.....qlekliervlvvdvelelqveRlvardgvseeevkaiiaaQlseeerlalad....vvldNdssl 177
                  +s+y++l+vPLL+E      +l +l+++vlvvd++ + q +R+ +rdg + ++++aii +Q+s+e+rl la+    ++l Nd +l
  EGE27828.1 102 SRSAYTILSVPLLFEGrhkspNLLALCDHVLVVDASNKIQRQRVAKRDGHNPTQIQAIIDQQISREQRLDLAQkigaDILVNDKTL 187
                 ***************83333456689*******************************************99973333567776655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.4e-08   6.3e-05       2     120 ..       5     155 ..       4     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.4e-08
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.......................gvnlrdvakenglllevdpealdeskrldedkldklldaleenss........ 69 
                 +ltG +G+GK+ ++++L k  g+                          l+d + +++ ++++ +    + +++ +    + ld+l++++         
  EGE27828.1   5 GLTGGIGSGKSAVSDYLGKQ-GItvvdadiiahrltsdgspllitlKKALGDWVLDHHGRYDRAAV---RARVFSDA---QTLDQLNAIIHpaihqail 96 
                 599**************999.5666999999999999*9999999999999999999999999988...33333333...3555555555455556666 PP

      AAA_18  70 .........aleegknlvidghlaeleseaakdikkvvLtaspeelleRlekRgyeeaki 120
                                +l+++g++  +   a+ d++  v++as+++ ++R++kR+ +++ +
  EGE27828.1  97 deldcsrsaYTILSVPLLFEGRHKSPNLLALCDHV-LVVDASNKIQRQRVAKRDGHNPTQ 155
                 78888666644445677****************99.******************998765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   3.4e-07    0.0015       5     127 ..       7     157 ..       3     170 .. 0.72
   2 ?   -1.0   0.0       0.4   1.8e+03      62      78 ..     169     186 ..     152     210 .. 0.51

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.4e-07
      AAA_33   5 vGlpGsGKstlaerllkklgavllssdt...................................lrrrlfgtdqqsktdytrvl.drlyqilnelarkal 67 
                  G  GsGKs +++  l k+g ++++ d+                                   +r r+f +d q++ +++ +  + ++q + + +   +
  EGE27828.1   7 TGGIGSGKSAVSDY-LGKQGITVVDADIiahrltsdgspllitlkkalgdwvldhhgrydraaVRARVF-SDAQTLDQLNAIIhPAIHQAILDEL--DC 101
                 5778*******996.5599*********88888888888888888888888888888888876666666.4555665555544144666665555..36 PP

      AAA_33  68 sagrnvildatnlsr..rerarflklarrlgvpvrivvvetdeetlkeRlakRaangddrse 127
                 s+ + +il  ++l++  ++  ++l+l       ++++vv+++++  ++R+akR  ++ ++++
  EGE27828.1 102 SRSAYTILSVPLLFEgrHKSPNLLALC------DHVLVVDASNKIQRQRVAKRDGHNPTQIQ 157
                 777888999998887312223444444......599******************99877643 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.4
      AAA_33  62 larkalsagrnvil.dat 78 
                 +++ a++ g+++++ d t
  EGE27828.1 169 RLDLAQKIGADILVnDKT 186
                 334444555554442333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00016       0.7       4      31 ..       6      34 ..       4      86 .. 0.73
   2 ?   -1.1   0.0      0.44     2e+03      29      64 ..     135     169 ..     123     187 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00016
      AAA_28  4 itGgestGKTtlleaLaargypvv.pEaa 31
                +tGg ++GK+ ++  L ++g++vv +++ 
  EGE27828.1  6 LTGGIGSGKSAVSDYLGKQGITVVdADII 34
                79*********************976554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.44
      AAA_28  29 Eaareileeklakgedalpwv.edllafaervleeql 64 
                 +a  +i +++ ak+ ++ p + + +  + +++ +eq+
  EGE27828.1 135 DASNKIQRQRVAKRDGHNPTQiQAI--IDQQISREQR 169
                 5555555666666666555532222..2233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1499.10
//
Query:       EGE27829.1  [L=258]
Description: type IV prepillin peptidase PilD [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-19   68.3  12.4    6.8e-19   68.3  12.4    2.7  3  Peptidase_A24    Type IV leader peptidase family
  ------ inclusion threshold ------
        5.8    6.7  10.1          4    7.2   0.3    2.7  2  MNHE             Na+/H+ ion antiporter subunit


Domain annotation for each model (and alignments):
>> Peptidase_A24  Type IV leader peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   5.2      0.59   5.3e+03      41      63 ..      11      33 ..       1     114 [. 0.51
   2 !   68.3  12.4   7.6e-23   6.8e-19       2     107 .]     111     219 ..     110     219 .. 0.90
   3 ?   -3.4   0.1       1.5   1.3e+04      26      36 ..     238     248 ..     234     254 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.59
  Peptidase_A24 41 lglpnlaqavlgalvgalvllli 63
                     ++  + a+lga vg  ++ li
     EGE27829.1 11 NWIWYTLIALLGAGVGGYLIHLI 33
                   23333333444443333333332 PP

  == domain 2  score: 68.3 bits;  conditional E-value: 7.6e-23
  Peptidase_A24   2 vlltillvlsviDldtrtlpdeltlpllllgvlfaqllllglpnlaqavlgalvgalvllli.....slvdeq.amGgGDvklaavlgaflgwerl 91 
                    +++++ l l+ iD + ++lpd+l+lpl ++g++++    + l +  +a++ga+vg+lvl+li     ++ + q +mG GD+kl+ ++ga+lg+ +l
     EGE27829.1 111 IFVWFGLGLAGIDYRVQLLPDRLVLPLGMIGLMAN--GFGVLTTPVDAIFGAVVGFLVLWLInalyrLARR-QdGMGLGDAKLLSACGAWLGIWQL 203
                    6788889999************************9..7899********************9755422224.36********************** PP

  Peptidase_A24  92 llavlvaillgavlgl 107
                    +++v++a+ lg+v g+
     EGE27829.1 204 PIIVFIAAALGVVAGI 219
                    ************9886 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.5
  Peptidase_A24  26 lpllllgvlfa 36 
                    ++ +++ +lf+
     EGE27829.1 238 IMAAWVVLLFG 248
                    44556666665 PP

>> MNHE  Na+/H+ ion antiporter subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3   0.00045         4      15      37 ..     153     175 ..     137     190 .. 0.77
   2 ?    2.1   4.4     0.017   1.5e+02       5      60 ..     194     253 ..     190     257 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00045
        MNHE  15 lgelllGlllallvalllrrlll 37 
                 + + ++G+++++lv++l++ l++
  EGE27829.1 153 PVDAIFGAVVGFLVLWLINALYR 175
                 7889**************87773 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.017
        MNHE   5 flvWllltgslgelllGlllallvalllrrll..lplrrv....llrllayllvflweivka 60 
                    Wl +++ +  ++++++l++++ ++++r    +    +    +l ++a +++++ e ++a
  EGE27829.1 194 CGAWLGIWQLPIIVFIAAALGVVAGIIIQRHQgkA--SAFafgpYLIMAAWVVLLFGEYIQA 253
                 67899999889999**************8877542..3334453333444455556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1848.60
//
Query:       EGE27830.1  [L=419]
Description: type IV pilus assembly protein PilC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-56  188.6   6.1    2.7e-28   98.4   0.2    2.3  2  T2SSF     Type II secretion system (T2SS), protein F
  ------ inclusion threshold ------
      0.097   10.8   0.1       0.13   10.3   0.1    1.1  1  MNR       Protein moonraker


Domain annotation for each model (and alignments):
>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   1.4   1.9e-30   1.7e-26       2     125 .]      87     208 ..      86     208 .. 0.99
   2 !   98.4   0.2     3e-32   2.7e-28       1     125 []     289     411 ..     289     411 .. 0.99

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 1.9e-30
                 HHHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   2 lrqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrklla 100
                 lr+latll +Gv l +aL+++a++++ng+l+  l +i++ +++G+++ +a++++p  ef +l+ +li age++g+L+ +Ler+ae+ e+++ ++ +l  
  EGE27830.1  87 LRTLATLLTSGVVLTDALDIAAKTTTNGRLSNKLIQIKQCIEQGENFTQAIASHP--EFGSLALALIDAGEKSGTLDIMLERAAEHAEQQALRQSQLNQ 183
                 79****************************************************9..9***************************************** PP

                 HHHTTXXXXXXXXXXXXXXXXXXXX CS
       T2SSF 101 allepllllvvallvllillaillp 125
                 al +p++++++ l+v+ ++l+ ++p
  EGE27830.1 184 ALRYPAAIALTSLIVSTVMLLKVVP 208
                 **********************998 PP

  == domain 2  score: 98.4 bits;  conditional E-value: 3e-32
                 HHHHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   1 flrqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrkll 99 
                 f+++l+t +s+Gvpl++++ l+++ +++  + ++ ++ia+ ++ G++l +a++ t+   f+++ vq++++ge++g+L+e+L+++a+++ +e + +++ l
  EGE27830.1 289 FAQTLSTTFSSGVPLAQSIVLAGRACHHVLFFDASEQIAKAVKTGTPLGQAMADTK--LFSPMSVQMVTVGEASGRLSEMLDQIAKHHDKEVKDKIDAL 385
                 899**************************************************998..89*************************************** PP

                 HHHHTTXXXXXXXXXXXXXXXXXXXX CS
       T2SSF 100 aallepllllvvallvllillaillp 125
                   ++ep++++v+++l+++++la++lp
  EGE27830.1 386 IGMIEPAIIIVMGVLIGGLVLAMYLP 411
                 ************************98 PP

>> MNR  Protein moonraker
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   1.5e-05      0.13     695     788 ..      82     175 ..      70     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 1.5e-05
         MNR 695 rvnssleanthlkdsssvntlsaqaaeeaaavdlesenveqlddlLedtaqelwavehdkileaealatladskdspsLEtmllRmeEmEkyqe 788
                 ++  sl + + l  s +v t +   a ++++    s+++ q+++++e+  +  +a+  +  + + ala +  ++ s +L++ml+R  E  + q+
  EGE27830.1  82 QILLSLRTLATLLTSGVVLTDALDIAAKTTTNGRLSNKLIQIKQCIEQGENFTQAIASHPEFGSLALALIDAGEKSGTLDIMLERAAEHAEQQA 175
                 5667788888888888888888899999999999***************************************************999765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1008  (0.0562218); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2962.65
//
Query:       EGE27831.1  [L=554]
Description: type IV pilus assembly ATPase PilB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-86  289.7   0.6    2.3e-86  289.3   0.6    1.1  1  T2SSE     Type II/IV secretion system protein
    3.4e-11   43.4   0.2    8.8e-11   42.0   0.2    1.7  1  T2SSE_N   Type II secretion system (T2SS), protein E, N-termi
    0.00016   22.0   0.0    0.00053   20.3   0.0    2.0  1  AAA_22    AAA domain
      0.001   18.8   0.1     0.0031   17.3   0.0    2.0  2  AAA_30    AAA domain
     0.0043   17.5   0.0      0.011   16.1   0.0    1.8  1  AAA_16    AAA ATPase domain
     0.0044   16.8   0.4      0.015   15.1   0.4    1.8  1  AAA_11    AAA domain
     0.0055   16.2   0.0      0.011   15.3   0.0    1.4  1  AAA_7     P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.036   13.8   0.0       0.12   12.2   0.0    1.8  1  AAA_29    P-loop containing region of AAA domain
      0.052   13.4   0.0       0.14   12.0   0.0    1.7  1  PELOTA_1  PELOTA RNA binding domain
      0.062   13.1   0.0       0.17   11.7   0.0    1.7  2  DEAD      DEAD/DEAH box helicase
      0.072   13.1   0.0       0.15   12.1   0.0    1.6  1  AAA_14    AAA domain
       0.17   11.1   0.0       0.36   10.0   0.0    1.5  1  DUF2075   Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.3   0.6   1.5e-89   2.3e-86       4     272 ..     174     439 ..     171     440 .. 0.98

  Alignments for each domain:
  == domain 1  score: 289.3 bits;  conditional E-value: 1.5e-89
       T2SSE   4 lleallddekvsdihvekper.vkvrervdgielreveelekaalerlisriaalakldiseerplqdarlp.....ekgvrlrvvllPvvagealviR 96 
                 +++a+  + k+sdih+e++++ +++r+r+dg +++ +++++k+ +++++s i+++a+ldi+e+r  qd+rl+     +++v++rv++lP+++ge++v+R
  EGE27831.1 174 FTDAI--RLKASDIHFEPYDAsYRIRFRIDG-VMQVIHNPPKSMAAQIASYIKVMANLDIAERRRAQDGRLKfdaqdGQSVDFRVSTLPTLHGEKVVLR 269
                 56677..889*********************.99*****************************************9999******************** PP

       T2SSE  97 ..kksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnakkakvtfadllr 193
                   +++++ + ld lg++ a+k+ + ++l+++   +g+ilv+G+TgsGKt++ly++l  +n+ + +i+  EDpvEi+l+g+nqv++n+k ++++fad+lr
  EGE27831.1 270 llDSAQALIGLDALGMDDAQKQLFIHALSRP---QGMILVTGPTGSGKTVSLYTALMRLNQPEINILSCEDPVEINLAGINQVNINPK-VQLDFADALR 364
                 *99999999**********************...******************************************************.********** PP

       T2SSE 194 aaLRlrPDrimvGEiRdketlei.lkAvnTGHlgslsTlHansaagalerLeqlgaeveaaelkssilavvdivvrlvrk 272
                 a+LR++PD+imvGEiRd++t++i   A++TGHl+ lsTlH+nsa ++++r++ +g  v++++l+ss+ ++  i++rl+r+
  EGE27831.1 365 AFLRQDPDVIMVGEIRDTDTAQIaTTAAQTGHLV-LSTLHTNSASDTITRMHSMG--VPSFHLASSLSLI--IAQRLARR 439
                 **********************************.********************..*************..******98 PP

>> T2SSE_N  Type II secretion system (T2SS), protein E, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.2   5.9e-14   8.8e-11       1     105 [.      41     143 ..      41     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 5.9e-14
     T2SSE_N   1 LveegllseeqlleaLaeqlglpfldldqleidpsllqllpleflrrygvlPlreedgkllvavvdPldlaaldelqrllgkkgvkpvlatksdidall 99 
                 Lv+ gl++ ++ll+  +  ++lp  ++ + ++++ +  +l+++   +y++lPl+ +   l++a++d +d +a+ +++++ ++ +++p l++++ ++all
  EGE27831.1  41 LVASGLIDAAKLLHIQSLSYNLPIYEP-PSQLSQVVETGLDPALFIKYRMLPLSCDKHMLTLAMSDATDKDAIGAMRFHARR-QIRPMLVEEDKLSALL 137
                 8999*******************6444.44555555556****************************************999.**************** PP

     T2SSE_N 100 drlygs 105
                 drly +
  EGE27831.1 138 DRLYLD 143
                 ***966 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.6e-07   0.00053       4      35 ..     300     330 ..     297     417 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.6e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeaka 35 
                  +g+++vtG++G+GKT++l + l++l++ +++
  EGE27831.1 300 PQGMILVTGPTGSGKTVSLYTALMRLNQ-PEI 330
                 69*******************9999964.333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.1e-06    0.0031       2      37 ..     285     320 ..     284     399 .. 0.89
   2 ?   -3.6   0.0       5.1   7.6e+03     147     160 ..     536     550 ..     527     552 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.1e-06
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalka 37 
                 +++ Q++++ ++l+ ++ + ++tGp G+GKt +l +
  EGE27831.1 285 MDDAQKQLFIHALSRPQGMILVTGPTGSGKTVSLYT 320
                 5789***************************99865 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.1
      AAA_30 147 gtaeLtevvRqke.s 160
                 g+++Lte++R ++ s
  EGE27831.1 536 GQISLTEMHRVTSeS 550
                 678899999998734 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.5e-06     0.011      19      52 ..     297     329 ..     286     449 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.5e-06
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdg 52 
                 +++++ +++l++G+ G+GK+  + ++l +l++ +
  EGE27831.1 297 LSRPQ-GMILVTGPTGSGKTVSLYTALMRLNQPE 329
                 33444.8***************955555787773 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.4   9.8e-06     0.015       2      70 ..     285     411 ..     284     415 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.8e-06
      AAA_11   2 lndsqreaiksalsese.itliqGPPGtgKTktivellsqll............................................sr........... 44 
                 ++d q++ + +als+++ + l+ GP G+gKT  +   l++l+                                            +            
  EGE27831.1 285 MDDAQKQLFIHALSRPQgMILVTGPTGSGKTVSLYTALMRLNqpeinilscedpveinlaginqvninpkvqldfadalraflrqdPDvimvgeirdtd 383
                 5789999999999999999**********************7666666666666666666666666655555555555555444440033344444433 PP

      AAA_11  45 .rk.seeeksakpriLvCapSNaAvDel 70 
                  ++   +++++++ +L + ++N A D +
  EGE27831.1 384 tAQiATTAAQTGHLVLSTLHTNSASDTI 411
                 3224556666777777777777777766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.3e-06     0.011      18      64 ..     286     332 ..     284     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.3e-06
       AAA_7  18 dtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekyls 64 
                 d ++ + +++ l + +  +l++GptG+GKtv + + l +l++ ++++
  EGE27831.1 286 DDAQKQLFIHALSRPQGMILVTGPTGSGKTVSLYTALMRLNQPEINI 332
                 66777899999999*********************888888766655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.8e-05      0.12      20      38 ..     299     317 ..     293     331 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.8e-05
      AAA_29  20 dlkgatlltGpsGsGKSTl 38 
                 +++g++l+tGp+GsGK+  
  EGE27831.1 299 RPQGMILVTGPTGSGKTVS 317
                 46789***********864 PP

>> PELOTA_1  PELOTA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.5e-05      0.14      27      62 ..     360     395 ..     342     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.5e-05
    PELOTA_1  27 gEaTRvlLRRvPekvlvrdeeepdlahlllLakekg 62 
                 ++a R++LR  P+ ++v + ++ d+a + + a++ g
  EGE27831.1 360 ADALRAFLRQDPDVIMVGEIRDTDTAQIATTAAQTG 395
                 7899*************************9999887 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.2   7.8e+03      51      72 ..     206     227 ..     198     261 .. 0.65
   2 ?   11.7   0.0   0.00011      0.17       3      35 ..     288     322 ..     286     340 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.2
                 EEEESSHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  51 livePtreLaeqtlnnlkkfkk 72 
                 +i  P +++a q+++ +k + +
  EGE27831.1 206 VIHNPPKSMAAQIASYIKVMAN 227
                 6667777777777776665555 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
                 HHHHHHHHHH..TTCEEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplil..gggdvlvaaeTGsGKTlaflipv 35 
                  Q++ + ++l   +g +lv ++TGsGKT     ++
  EGE27831.1 288 AQKQLFIHALsrPQGMILVTGPTGSGKTVSLYTAL 322
                 6777777777556689************9866655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0001      0.15       4      49 ..     303     346 ..     300     444 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladp 49 
                 ++++tG+  +GKT+ l++ + +l   + +i  ++++d+ + +la  
  EGE27831.1 303 MILVTGPTGSGKTVSLYTALMRLN--QPEINILSCEDPVEINLAGI 346
                 799*************99986655..88899999999888555422 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00024      0.36       3      26 ..     303     326 ..     301     369 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00024
     DUF2075   3 vvlVtGvaGtGKtvvllnllaele 26 
                 ++lVtG +G+GKtv l ++l +l+
  EGE27831.1 303 MILVTGPTGSGKTVSLYTALMRLN 326
                 79***************9999983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4032.76
//
Query:       EGE27832.1  [L=49]
Description: hypothetical protein EA1_00555 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 372.06
//
Query:       EGE27833.1  [L=407]
Description: Bcr/CflA subfamily drug resistance transporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-36  125.1  39.1    4.7e-36  124.4  39.1    1.4  1  MFS_1     Major Facilitator Superfamily
    6.1e-08   32.0   7.7    6.1e-08   32.0   7.7    2.2  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.82    9.5   4.6        1.4    8.8   0.1    2.9  3  GCSF      Granulocyte colony-stimulating factor


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4  39.1   7.8e-40   4.7e-36       4     352 ..      22     364 ..      19     399 .. 0.86

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 7.8e-40
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgaga 101
                 ++++  l++++++pa+p  +aed+g+++ +i   + +y+lg ++++l++G++sdr+Gr r l lg+ +f++++++++ +++   +l+++r lq+lga++
  EGE27833.1  22 MIAIGPLSIDMYLPAFP-SMAEDFGVNVGTIAKSVPAYFLGLVFGQLFYGPFSDRIGRVRPLYLGMSIFIIASIICA-TTNNEyALFIARTLQALGACV 118
                 567788999********.9*****************************************************66666.4666669************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpaw 200
                  + +  a+i+d  ++ + +ra++l+ + +++++il+p lg+l++  + W+++f++la +++l ++l  ++l e+ +++ r++  +        ++ + +
  EGE27833.1 119 TTVVTRAAIRDTLNPVQSARAFSLMVLVMGVAPILAPSLGALILKVADWHGIFWFLASFGVLNLLLTKCFLKETLKPENRNT--RP----MSESFGQYF 211
                 ***************************************************************9998888855544444443..22....345788899 PP

       MFS_1 201 kallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.. 297
                 ++++ + +++ ++++ ll +++f +l++ + l+ +  + l+   + ++++++ a+++++l  +  +l +r+   + l  + ++ l+aa  l++l+++  
  EGE27833.1 212 GLIKDRTFMLPAVASGLLQGAFFIYLSISSELF-MVNYQLT-EHQFAIAFGVNAFGFIALTQVNQFLTKRFHLVNLLRTGAVIQLAAAGVLLILGLIfg 308
                 999999988767777777776666688888887.9999999.6777777********99*99********88877777777777777777777777776 PP

       MFS_1 298 ..ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                    s  ++ ++l+++  glg+++p ++a+a  +  +++ag as+l + ++  +g++g
  EGE27833.1 309 gkASFYWVFASLFICIAGLGLTQPNATAIALAFQ-KKRAGLASALQGALQFSVGIFG 364
                 43344444446666666***99999999888876.7999999999999988888877 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   7.7     1e-11   6.1e-08      52     194 ..      55     192 ..      47     194 .. 0.93
   2 ?   -7.3  14.4         3   1.8e+04     241     437 ..     206     398 ..     193     406 .. 0.70

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1e-11
                 HHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHH CS
    Sugar_tr  52 vsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfG 150
                 v ++++G ++G+lf g+++dr+GR   l  +  +f+i+++++a+++   + ++l+++R l  +g+ +++v++   i     +    +  sl  l + + 
  EGE27833.1  55 VPAYFLGLVFGQLFYGPFSDRIGRVRPLYLGMSIFIIASIICATTN---NEYALFIARTLQALGACVTTVVTRAAIRDTLNPVQSARAFSLMVLVMGVA 150
                 67899*****************************************...88*************************99998888888899999999999 PP

                 HHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS--- CS
    Sugar_tr 151 ilvaaifglglnktsnadgwrillglqlvpallllill.lflPES 194
                  ++a  +g+ + k+ +   w+  +++ + + +l l+l  +fl E+
  EGE27833.1 151 PILAPSLGALILKVAD---WHGIFWFLASFGVLNLLLTkCFLKET 192
                 999*************...***********999998877999987 PP

  == domain 2  score: -7.3 bits;  conditional E-value: 3
                 .HTTHHHHSH...HHHHHHHH.HHHHHHTTHHHHHHHTTTHHHHSS-THH.HHHHHHHHHHHHHH.HHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH. CS
    Sugar_tr 241 swkellssktvrqrlligvvl.qifqqltGinaimyysptifenlglsks.llvtiivgvvnfva.tfvaiflvdrfGRRtllllGaagmaicfvilgi 336
                 s +++++ ++   r+++  ++   + q     ++ + s  ++ n  l++  +++ ++v +  f+a t v  fl +rf   +ll +Ga+++++++ +l i
  EGE27833.1 206 SFGQYFGLIK--DRTFMLPAVaSGLLQGAFFIYLSISSELFMVNYQLTEHqFAIAFGVNAFGFIAlTQVNQFLTKRFHLVNLLRTGAVIQLAAAGVLLI 302
                 5555555544..33333333303333444434444444455567777777566666666666655234447999999999********99999988873 PP

                 .HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 337 valllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvff 435
                   l++  k    +    vf  lfi++ +lg++   +  ++  f+++  ++a+a+  a+++ + ++ +ll+  +      +  ++   +l+v++++ vf 
  EGE27833.1 303 LGLIFGGK----ASFYWVFASLFICIAGLGLTQPNATAIALAFQKKRAGLASALQGALQFSVGIFGGLLIGLFELDPV-TRLGITTSILVVVGTFLVFY 396
                 33333333....56899999************9999999999*****************9999999998877776666.77888888888888888876 PP

                 HS CS
    Sugar_tr 436 fv 437
                   
  EGE27833.1 397 IN 398
                 65 PP

>> GCSF  Granulocyte colony-stimulating factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00023       1.4      68      99 ..     142     173 ..     103     183 .. 0.84
   2 ?   -0.9   0.1      0.22   1.3e+03     119     143 ..     254     278 ..     246     285 .. 0.86
   3 ?    0.9   0.6     0.061   3.6e+02     106     142 ..     323     357 ..     269     363 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00023
                 HHHHTTTSSTTTHHHHHHHHHHHHHHHHHHHH CS
        GCSF  68 llqalegispelaptldtlqldvadfattiwq 99 
                 l+  + g++p lap+l  l l vad+    w 
  EGE27833.1 142 LMVLVMGVAPILAPSLGALILKVADWHGIFWF 173
                 566789*******************9988885 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.22
                 ---SHHHHHHHHHHHHHHHHHHHHH CS
        GCSF 119 aftsafqrraggvlvasqlqsflev 143
                  f+ af   a g ++ +q+++fl  
  EGE27833.1 254 QFAIAFGVNAFGFIALTQVNQFLTK 278
                 6999******************965 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.061
                 -S-SS--SSS--S---SHHHHHHHHHHHHHHHHHHHH CS
        GCSF 106 vapavqptqgampaftsafqrraggvlvasqlqsfle 142
                     +  tq    a++ afq++  g+  as lq+ l+
  EGE27833.1 323 CIAGLGLTQPNATAIALAFQKKRAGL--ASALQGALQ 357
                 45566778999999999999887775..566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2986.76
//
Query:       EGE27834.1  [L=1314]
Description: phosphoribosylformylglycinamidine synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.5e-100  334.4   0.0   5.2e-100  333.8   0.0    1.3  1  GATase_5        CobB/CobQ-like glutamine amidotransferase dom
    2.2e-35  122.1   1.3    1.2e-25   90.5   0.1    2.4  2  AIRS_C          AIR synthase related protein, C-terminal doma
    4.3e-28   97.6   0.0    8.4e-28   96.7   0.0    1.4  1  FGAR-AT_N       Formylglycinamide ribonucleotide amidotransfe
    6.8e-23   81.0   0.0    1.7e-22   79.7   0.0    1.7  1  FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransfe
     0.0039   17.8   1.7       0.52   11.0   0.0    2.8  2  AIRS            AIR synthase related protein, N-terminal doma


Domain annotation for each model (and alignments):
>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.8   0.0  1.5e-103  5.2e-100       1     259 [.    1059    1312 ..    1059    1313 .. 0.97

  Alignments for each domain:
  == domain 1  score: 333.8 bits;  conditional E-value: 1.5e-103
    GATase_5    1 kpkvailreeGvngeyemaaafekaGfeavdvhmsdllegrvslddfqilalpGGfsygDelgsgkgwakslllneklrealekflnredtlaLGiC 97  
                  +pkvailre+Gvng+ em a f +aGf+a+dvhmsdl++gr++l+df++l+++GGfsygD+lg+g+gwa+s+l++++lr ++++f++r++t+aLG+C
  EGE27834.1 1059 QPKVAILREQGVNGHLEMGAGFVRAGFDAIDVHMSDLMSGRINLRDFEGLVACGGFSYGDVLGAGSGWANSILFHDELRMQFARFFHRPETFALGVC 1155
                  79*********************************************************************************************** PP

    GATase_5   98 nGfqlLvklg.lvpggeieeaeksptltrNksgrfesrlvsvvvsekspsvflkgmeglslp..vahGeGrfvfkseevlkeleangqvalrYvdee 191 
                  nG+q++++l+ l+ g     ae+ p+++ Nks rfe+r v+v++ e ++sv+lkgm+ + lp  +ahGeG +++ +++ +++l  +gq+alrYvd++
  EGE27834.1 1156 NGCQMMSQLKdLMVG-----AESFPRFIANKSARFEARTVNVRI-ERTKSVLLKGMQDSILPvaIAHGEGYANL-DDKSMADLTYHGQIALRYVDSQ 1245
                  **********88777.....9*********************98.9**********988888779*********.8999****************** PP

    GATase_5  192 gkpteeyplNPNgSpegiagitspdGRvlalmpHpervveavqksiipeeeeeevspwlrlFenavky 259 
                  g+pte+yplNPNgSp+gi+gi+s+dGRv+ +mpHper+ +av++s ++++e+++ + w+rlF+na+++
  EGE27834.1 1246 GNPTEHYPLNPNGSPQGITGICSNDGRVTLMMPHPERTLRAVNHS-WKPHEWTNDGAWMRLFRNARAF 1312
                  *********************************************.666788766***********98 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.1   3.3e-29   1.2e-25       1     150 [.     442     600 ..     442     605 .. 0.96
   2 !   30.2   0.1   1.2e-10   4.4e-07      14     147 ..     853     973 ..     846     981 .. 0.77

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 3.3e-29
                 STTEEEEEEET....SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHH......HTTECEEEE--TTHHHHHHHHHHHTTTEEEEE CS
      AIRS_C   1 kpGdvliltgs....lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaal......kglvkaahDvTgGGLlgalaemapasgvgaei 89 
                 ++Gd+li++g+    +Glgg + s+++ +  +egld  +vq++++++e+++++v + ++a+       +++ ++hDv++GGL++a +e+++++++ga++
  EGE27834.1 442 QEGDLLIVLGGpamqIGLGGGAASSVDSGKLDEGLDFASVQRDNAEMERRCQEVIDTCWAMtkdgmdANPIISIHDVGAGGLSNAMPELVDDHELGAHL 540
                 69********************************9988************************999999******************************* PP

                 ECGTHHHHHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESSS CS
      AIRS_C  90 dldkvpifdelesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtakee 150
                 +l kvp ++  +sp+ ++  e ++r+++a++pe+++ + +i+++e++p +a++G++t  ++
  EGE27834.1 541 NLRKVPSLEAGMSPMAIWSNEAQERYVLAIRPESEALFDSICSRERCP-YAILGTATTVRQ 600
                 ***********************************************7.******998765 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 1.2e-10
                 CTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHHHHHHHHHHHCSTT CS
      AIRS_C  14 lggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifdelesplemllsens 112
                 lgg+ ++    +l  +  d     l  ++ + +     +a+a + g + a hD+++GGL+ ++aem +as+  +++ l+     de    l  l++e+ 
  EGE27834.1 853 LGGSILAQTLNQLGCDCPD-----LERPEDLANFFAFIQAAAKA-GVIQAYHDIGDGGLIASVAEMQFASRMAITLALS-----DEN--LLGQLFAEEL 938
                 5555555555555554443.....66677777888888999998.*************************666666666.....553..4778888888 PP

                 TEEEEEEEHGGHHHHHHHHHHTTC.CCEEEEEEEEE CS
      AIRS_C 113 Grllvavppeeadavlaileeegl.peaavIGevta 147
                 G  +v v p++  a++++++ +g+   ++ IG++  
  EGE27834.1 939 G-AVVQVLPDDVPAFVDLAKTHGVsEFVSLIGQAKT 973
                 8.77999999999***********988999999765 PP

>> FGAR-AT_N  Formylglycinamide ribonucleotide amidotransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   2.3e-31   8.4e-28       9     115 .]      43     150 ..      35     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 2.3e-31
   FGAR-AT_N   9 eeelseeeravleqlLeygdk..leeeeeegelllVvPRlGtiSpWsSkAtdIahncglekvkRiErgiayvlelkelseeelaalaalLhDrmtesvl 105
                 +++lse+++++  +lL++g++  l+++++++ +++V+PR+GtiSpW+SkAtdI++ncg+ ++ R+Er+i+y+l+ ++l ++  a ++++LhDrmt+s++
  EGE27834.1  43 DTPLSESDHQKAIDLLNQGQApsLNTADDAQIQVVVAPRFGTISPWASKATDIFNNCGV-TIGRVERVIVYTLTGENLPKRLPAIAESILHDRMTQSLV 140
                 6789999***********9983355555667799************************9.8************************************** PP

   FGAR-AT_N 106 eeledaealF 115
                  el+d++ lF
  EGE27834.1 141 YELSDVSVLF 150
                 *****99998 PP

>> FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransferase linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   4.6e-26   1.7e-22       1      50 []     171     220 ..     171     220 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 4.6e-26
  FGAR-AT_linker   1 LeeankelglaLsdeEidylqeafeklgrnPtdvElemfaqvwSEHCrHK 50 
                     L +an e g+aLsd+++ yl+e f+klgrnPtdvEl+mfaq++SEHCrHK
      EGE27834.1 171 LVQANAEYGFALSDQDMTYLVENFTKLGRNPTDVELMMFAQANSEHCRHK 220
                     6799*********************************************9 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00014      0.52       5      53 ..     292     341 ..     258     398 .. 0.72
   2 ?    4.5   1.0     0.016        57       2      79 ..     694     793 ..     693     820 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                 EEEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTT..TEEEEEEEEEEEEC CS
        AIRS   5 vvvttdshnrpvlvepvhfiGakavavnlsDlaam..GArPlalllslalp 53 
                 +++++++hn+p++++p+ + +a+++++ ++D  a+  G++P a l  ++++
  EGE27834.1 292 ILMKVETHNHPTAIAPFAG-AATGAGGEIRDEGATgrGGKPKAGLTGFSVS 341
                 389****************.***********87652279999777777766 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.016
                 SSEE...........EEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTTTEEEE.EEEEEEEEC...........HHHHHHHHHHHHHHHTT-EEEEEE CS
        AIRS   2 Daav...........vvttdshnrpvlvepvhfiGakavavnlsDlaamGArPl.alllslalp...........wleevvrglaeaaeelgvplvgGd 77 
                 D+av           ++++       l++p    +++ava+++ ++a+   + +  ++ls ++             +++v +  +e + +lg+++  G+
  EGE27834.1 694 DCAVtstalnaitgeAMAMGERAPVALINPAAS-ARLAVAEAVTNIASARIDKIsDITLSANWMaacgdekedaaLFDAVHAVGEELCPALGIAIPVGK 791
                 777555555555555555555555666777777.*************9988888778888887788888888888888888888888888888887776 PP

                 EE CS
        AIRS  78 ts 79 
                  s
  EGE27834.1 792 DS 793
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 8577.11
//
Query:       EGE27835.1  [L=423]
Description: sodium/glutamate symporter [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.1e-138  459.1  18.3     8e-136  452.5  18.3    2.0  1  Glt_symporter    Sodium/glutamate symporter
    0.00013   21.0  12.1      0.029   13.3   5.1    2.2  2  Cons_hypoth698   Conserved hypothetical protein 698
  ------ inclusion threshold ------
      0.047   13.2   7.9       0.31   10.5   0.1    3.2  3  DUF2938          Protein of unknown function (DUF2938)
         10    6.2   8.8        5.2    7.1   0.4    3.6  3  Phage_holin_2_1  Bacteriophage P21 holin S


Domain annotation for each model (and alignments):
>> Glt_symporter  Sodium/glutamate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  452.5  18.3  1.8e-139    8e-136       1     367 [.       3     390 ..       3     391 .. 0.92

  Alignments for each domain:
  == domain 1  score: 452.5 bits;  conditional E-value: 1.8e-139
  Glt_symporter   1 ikldaletlvvailvlllGkalvkkvkfLkkfniPepvvgGlivallllllkkisglelefdaslqdvlmlaffttiGLsanlkllkkGGkvllvf 96 
                    i+l+ ++tl++a+lvlllG+ lvkk+kfL +fniPepv+gGli+a+++  l+ ++g+++ f+++lq++ ml+ff++iGLsa++ +lk+GGk+l++f
     EGE27835.1   3 ITLNGYYTLILATLVLLLGRLLVKKIKFLGDFNIPEPVAGGLIAAVIVYCLNWFFGYSFIFQKELQTACMLMFFASIGLSADFGRLKAGGKPLIIF 98 
                    68999******************************************************************************************* PP

  Glt_symporter  97 llvvailiviqnlvGvslasllgldpllGllaGsislsGGhGtaaawakvladkyglqnalevalacatfGlvlGGliGgPvakfLikrnk..... 187
                    l+vv+ +i++q++vGv+las+lgldpllGl+aGs+sl+GGhGta aw+ +++dkyg+ +a+++++acat+Glv+GG+iGgPvak L ++       
     EGE27835.1  99 LFVVSGFILLQDAVGVGLASALGLDPLLGLVAGSVSLTGGHGTAGAWGYTFEDKYGVVGATTLGIACATYGLVAGGVIGGPVAKRLTNKLGikpka 194
                    **************************************************************************************9986533434 PP

  Glt_symporter 188 ................lkeekeedtkeevleeafekekekrkitakslletlaliliclvvgkylsalvketalelPtfvlalfvgvilrnllell 267
                                    l +++++ + +++ ++ fe++++ r ita+s +etlal + cl+ + ++  + k+t++elPtfv+alf gv++rn+l+++
     EGE27835.1 195 havspskmeqlandqsLYNTTHNLDDDTAHKQMFERPDNIRLITASSAIETLALFAACLAFADIMTGVAKDTWFELPTFVWALFGGVVIRNILTTF 290
                    4444432222211111011111223345678899************************************************************** PP

  Glt_symporter 268 klkkveekavdvlgdvsLslfLalalmslkllelaklalpllvillvqvvvlvlfailvtfrllGkdYdaavlsaGflGfglGatPtaianmqavt 363
                    +   ++++a+dv+g+ +LslfLa+al+slkl+el+ la p+l+il+ q+++++ +a+++tfr++GkdYdaavl+aG++GfglGatPtaianmqa+t
     EGE27835.1 291 FNFDMFDRAIDVFGNAALSLFLAMALLSLKLWELTGLAGPVLIILAAQTLAMIGYAYFITFRTMGKDYDAAVLAAGHCGFGLGATPTAIANMQAIT 386
                    ************************************************************************************************ PP

  Glt_symporter 364 ekfg 367
                    +++ 
     EGE27835.1 387 DRYI 390
                    **95 PP

>> Cons_hypoth698  Conserved hypothetical protein 698
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.6   1.5e-05     0.066     215     303 ..      13      97 ..       8      98 .. 0.71
   2 !   13.3   5.1   6.5e-06     0.029       4     123 ..     247     370 ..     244     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.5e-05
  Cons_hypoth698 215 lapvvlllslllakreeesetkeakitiPwFvlg.FlvvallntlvllpselvsalktlstlllvmalaAlglktdlkalkkaglkplll 303
                     la +vlll+ ll k+ +        + iP  v g  ++++++  l+++    +   k+l+t +++m +a +gl  d+ +l kag kpl++
      EGE27835.1  13 LATLVLLLGRLLVKKIK---FLG-DFNIPEPVAGgLIAAVIVYCLNWFFGYSFIFQKELQTACMLMFFASIGLSADFGRL-KAGGKPLII 97 
                     55555555544444333...222.55677766651455566788999999999999***********************8.578888875 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 6.5e-06
  Cons_hypoth698   4 llllliavlalllakve.llfaklsalllAillGillgn...flklqeqlkaGvafskkklLrlgivllGfrltlsdiakvGlkgvlldiivlis 94 
                      l +++ ++a ++  v   +  +l   ++A++ G++++n   ++   + +++ ++++ +  L l  ++  + l l ++  + +  +++ ++++++
      EGE27835.1 247 ALFAACLAFADIMTGVAkDTWFELPTFVWALFGGVVIRNiltTFFNFDMFDRAIDVFGNAALSLFLAMALLSLKLWELTGLAGPVLIILAAQTLA 341
                     55555555555555555478899****************87666677899**************9999999************************ PP

  Cons_hypoth698  95 tfllvlllgakllkldkklalLvaaGssi 123
                     +++ + ++  + ++ d   a+L+a  ++ 
      EGE27835.1 342 MIGYAYFITFRTMGKDYDAAVLAAGHCGF 370
                     **********************9987765 PP

>> DUF2938  Protein of unknown function (DUF2938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3    0.0019       8.6     100     120 ..      99     119 ..      92     129 .. 0.86
   2 ?   10.5   0.1     7e-05      0.31      58     101 ..     240     283 ..     222     296 .. 0.84
   3 ?   -1.0   0.4      0.25   1.1e+03      74     117 ..     315     358 ..     297     365 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0019
     DUF2938 100 vtvvapflllqPalGaGlaas 120
                 + vv +f+llq a+G+Gla++
  EGE27835.1  99 LFVVSGFILLQDAVGVGLASA 119
                 56899*************986 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 7e-05
     DUF2938  58 eralGwlahYliGilfaallvllvgaeWlaePtllpalvvgivt 101
                   a+ +la ++  ++fa ++  ++  +W++ Pt++ al  g+v 
  EGE27835.1 240 SSAIETLALFAACLAFADIMTGVAKDTWFELPTFVWALFGGVVI 283
                 567888999999**************************999874 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.25
     DUF2938  74 aallvllvgaeWlaePtllpalvvgivtvvapflllqPalGaGl 117
                 a+l + l+  + la P l+   + ++++++ ++++   ++G  +
  EGE27835.1 315 ALLSLKLWELTGLAGPVLIILAAQTLAMIGYAYFITFRTMGKDY 358
                 45556667777788999999999999999999999999999765 PP

>> Phage_holin_2_1  Bacteriophage P21 holin S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4    0.0012       5.2      37      54 ..      40      57 ..      39      60 .. 0.95
   2 ?    0.2   0.2      0.17   7.6e+02      17      51 ..     252     292 ..     247     294 .. 0.64
   3 ?    1.4   0.2     0.074   3.3e+02      23      46 ..     313     336 ..     303     342 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0012
  Phage_holin_2_1 37 vlgglvigllTyltnlYF 54
                     v+ggl+ +++ y  n++F
       EGE27835.1 40 VAGGLIAAVIVYCLNWFF 57
                     89***************9 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.17
  Phage_holin_2_1  17 gywlkqlldklspeeWs.....aigvlgglvi.gllTyltn 51 
                      +  ++ +++++ ++ W      + ++ gg+vi  +lT + n
       EGE27835.1 252 CLAFADIMTGVAKDTWFelptfVWALFGGVVIrNILTTFFN 292
                      55677888888888885222213367788777447777777 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.074
  Phage_holin_2_1  23 lldklspeeWsaigvlgglvigll 46 
                       ++ ls + W+  g++g ++i+l+
       EGE27835.1 313 AMALLSLKLWELTGLAGPVLIILA 336
                      678899999************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2821.54
//
Query:       EGE27836.1  [L=443]
Description: N-acetylglutamate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-21   75.5   0.1    6.6e-21   75.0   0.1    1.2  1  AA_kinase        Amino acid kinase family
    2.3e-09   37.5   0.0    4.6e-09   36.5   0.0    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.8e-06   26.9   0.0    7.8e-06   25.8   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    4.3e-06   27.1   0.0    9.7e-06   25.9   0.0    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0044   17.2   0.0      0.012   15.8   0.0    1.8  2  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.056   12.6   0.0       0.13   11.4   0.0    1.5  2  URO-D            Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.1   2.2e-24   6.6e-21       1     241 []      32     271 ..      32     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 2.2e-24
                 TEEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHG CS
   AA_kinase   1 krvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglp 99 
                 k++Vv +G  +++  ++  +  l+ + a l++ g+klv+VhG ++++ + l+  ++l s+ ++   r+t  e + ++  +a++s+   + +a l+ gl+
  EGE27836.1  32 KTFVVMFGDEAVA-RDN--FSTLIHDFALLHSLGIKLVLVHGVRPQVEKNLQN-RKLISNLHE-NVRVTPYESMPAIL-EAVGSIRL-QIEARLSMGLA 123
                 689**********.555..9*********************************.899999888.89999999999998.89999987.66777899*** PP

                 EEEE-GGGTCEECCCE..............HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCE CS
   AA_kinase 100 avglsaaaldateagr............degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVy 186
                 + ++ ++ +da+++++            d++ +g+v+s+d +ai++ l++++++ l++  g++++ge+ ++ ++ +a   A al+Adkli+l + dG+ 
  EGE27836.1 124 NSPMYGSRIDAISGNFvtarpygirdgmDYQMTGEVRSIDVDAIRHNLDNDHIVLLGPT-GFSVTGEIFNLLAEDVALTTAIALQADKLIFLGEQDGII 221
                 **************************************************999999996.6******99*****************************9 PP

                 SSTTTTCCTTCECCEEEHHHCHH.CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 187 dadpkkvpdarllpeisvdeaee.saselatgGmkvkhpaalaaarrggipvvItn 241
                   d+      rll+e+  +e++    + +    +  +++ a+ a+r+g+++++I++
  EGE27836.1 222 GQDG------RLLHELIPNEVDRlLRDCDDHEEISHFLRCAASACRQGVHRTHIIS 271
                 8876......999999888888887799999***********************86 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.5e-12   4.6e-09      25      99 ..     327     400 ..     303     414 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.5e-12
                     HHHHHSTTC.EEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE CS
  Acetyltransf_1  25 eesfsleae.gllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl 99 
                     +   +le e +++  +e+dg+++G++ l++ +    + a++ sla++p+yr++  G  Ll  le++ar++g + +++
      EGE27836.1 327 RSQERLEQEiEFYNvIERDGTILGCAALYPLDA---QSAEVASLAIHPDYRKSSRGADLLAFLEQQARSHGRHQLYA 400
                     333444555544445******************...9*********************************9888866 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.6e-09   7.8e-06      23      97 ..     329     406 ..     316     423 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.6e-09
  Acetyltransf_10  23 rerieegealllvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspya 97 
                      +er+e++  ++ v e++g+i+G+++l   +    +++ l+++p+yr+   g+ Ll ++e++a+ +g + +l +  +++a
       EGE27836.1 329 QERLEQEIEFYNVIERDGTILGCAALyPLDAqsaEVASLAIHPDYRKSSRGADLLAFLEQQARSHGRH-QLYALTTHTA 406
                      677788899***************8853333578****************************999888.5544444444 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.3e-09   9.7e-06       6      75 ..     339     415 ..     322     416 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.3e-09
                     E.EEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH..TT...SEEEEEEEEE.THHHHHHHHHHTTEE CS
  Acetyltransf_7   6 f.VaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLlea..ae...kgiileqlel.naekaikfYeklGFe 75 
                     + V+e+dg i+G++al++ld   ae   la++p+yr+   G  Ll++  ++   +g + +ql+  + +++++++   GF 
      EGE27836.1 339 YnVIERDGTILGCAALYPLDaqsAEVASLAIHPDYRKSSRGADLLAFleQQarsHG-R-HQLYAlT-THTAHWFIEQGFS 415
                     3499***************988777777******************8541144555.2.2233322.2458899888996 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       5.3   1.6e+04     124     139 ..     174     189 ..     166     192 .. 0.79
   2 !   15.8   0.0   3.9e-06     0.012      40     121 ..     331     405 ..     300     433 .. 0.70

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5.3
  Acetyltransf_4 124 nsiqfhkalGFelvgi 139
                      +i+++   GF+++g+
      EGE27836.1 174 DHIVLLGPTGFSVTGE 189
                     5899999999999986 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.9e-06
  Acetyltransf_4  40 flealdsekeyvflvae.sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiasp 121
                     +le+    +  ++ v+e +++i G a+l  +++    ++ae+  +  + d +k + g +l+++leq ++  + ++l+a +  +
      EGE27836.1 331 RLEQ----EIEFYNVIErDGTILGCAALYPLDA----QSAEVASLAIHPDYRKSSRGADLLAFLEQQARSHGRHQLYALTTHT 405
                     3333....35589********************....5666655555799****************************98733 PP

>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.4e-05      0.13      77     137 ..      57     118 ..      43     128 .. 0.85
   2 ?   -2.9   0.0      0.97   2.9e+03     201     227 ..     282     308 ..     259     312 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.4e-05
                 GGGGGT-EEEEETTTEEEEE--S-....GGGS----GGG..G..HHHHHHHHHHHHH.--SS CS
       URO-D  77 eaealGlevefeegegPvvekpvrtaedveklevpddvee.grlpyvleaikllkkelggev 137
                  ++ lG+++ ++ g  P+vek++ +++ + +l++   v   + +p +lea+  ++ +++ ++
  EGE27836.1  57 LLHSLGIKLVLVHGVRPQVEKNLQNRKLISNLHENVRVTPyESMPAILEAVGSIRLQIEARL 118
                 6789****************************99988755889***********99987554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.97
                 EEEEETTGGGS-HHHHHHHTHHHHHHH CS
       URO-D 201 iqifDswagllspedfeefvlpylkri 227
                 ++  D +++l+s++ +ee+ +  ++ +
  EGE27836.1 282 LFTRDGSGTLISHDPYEEIRHATVNDV 308
                 344569999999999999988877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3211.02
//
Query:       EGE27837.1  [L=29]
Description: hypothetical protein EA1_00580 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (29 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 224.06
//
Query:       EGE27838.1  [L=85]
Description: hypothetical protein EA1_00585 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 676.31
//
Query:       EGE27839.1  [L=125]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0026   18.0   0.2     0.0045   17.3   0.2    1.5  1  DUF11        Domain of unknown function DUF11
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.027   14.7   0.0    1.7  1  NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosi


Domain annotation for each model (and alignments):
>> DUF11  Domain of unknown function DUF11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2     5e-07    0.0045       8      52 ..      22      70 ..      14     124 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5e-07
       DUF11  8 sevrpGdtvtytltvtNtgpasangvvvtDtlPaglayvsvsas....q 52
                s +++Gd ++y + +tN g++   +++v   lP+g ++  v +     q
  EGE27839.1 22 SSIKAGDLIEYQVLLTNDGNNRVRDMRVALSLPQGAEFTGVVSPsvgtQ 70
                4699*****************************8877655444423331 PP

>> NPCBM_assoc  NPCBM-associated, NEW3 domain of alpha-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     3e-06     0.027       2      43 ..      25      63 ..      24      94 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3e-06
  NPCBM_assoc  2 epGetvtltltvtndgtaaatnvslslslPeGWtvvevspas 43
                 ++G+  ++++ +tndg+  +++ +++lslP+G +   +++  
   EGE27839.1 25 KAGDLIEYQVLLTNDGNNRVRDMRVALSLPQGAE---FTGVV 63
                 678889999**********************966...44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 935.42
//
Query:       EGE27840.1  [L=323]
Description: tRNA-dihydrouridine synthase C [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-59  200.2   0.0    5.7e-59  199.7   0.0    1.2  1  Dus       Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.7   0.0   3.2e-63   5.7e-59       2     290 ..      14     305 ..      13     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 199.7 bits;  conditional E-value: 3.2e-63
                 E---TTTS-HHHHHHHHHTT-S.....SEEEEEEEE-SSS---HHHHHHH-GGGGGT......SCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESS CS
         Dus   2 laPmagvtdlpfRelvrefgat.....aLvvtemvtakaivreekvrirmlseeeee......tplavQlggsdpallaeaAklvadlgadeIdlNvGC 89 
                 laPm+g td  +R+++++++ +     + +v+e+++++ +  + +v+++ ++e++++      tp+ vQl+g++p+++a+ A +++ lga++IdlN+GC
  EGE27840.1  14 LAPMEGLTDPLMRRVLTQIAYDlgspyDWAVSEFIRVTHYPLPAHVFYKYVPELHTKgctasgTPVHVQLLGNNPETMAASALVAVSLGAKAIDLNFGC 112
                 9******************9888888899********************************************************************** PP

                 TTEEETTEEEGGGGGGSHHHHHHHHHHHHCCSS..S-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-E CS
         Dus  90 PskkvtrggaGaaLlrkpdlvaqivkavvkave..iPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipv 186
                 P+k+v++ ++G+ Ll++p++++ i+++v++a++  iPv++kir+g  d+++ + e++++v +a a++ltvH+Rt+ ++y+ +a+we+I+   +++ +p+
  EGE27840.1 113 PAKTVNNHKGGSVLLEEPKTLYTIIRTVRDAIPtqIPVSAKIRLGYTDTSQ-SAEIGHAVADARADWLTVHARTKVDGYKPPAYWEKIAPF-NDLGLPI 209
                 *******************************9999*************999.99***********************************97.5799*** PP

                 EEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHHHHHHHHHH.HTTTTCH CS
         Dus 187 iaNGdIkdaedaqaileetGadgvmigrgalgnPwlfaestavktgeaepapplaeeaeiveehlkkleeelgedkglrkirkhlawylkg.lkkaael 284
                 iaNG+I++ae a+++++++  + +m grga  +P l a    +  g+ +        a++++++l+ + +   +++gl    k+  ++l++   +a++l
  EGE27840.1 210 IANGEIWNAEHARRCIAQSQTHHLMLGRGAVTRPDLTA----IIAGKSDLG-----WADLCQHQLSFINDITDNQNGLIGRYKQWLAMLTKgYTQAHQL 299
                 ************************************97....333333222.....2355555555555555555555555555444444334444444 PP

                 HHHHHH CS
         Dus 285 rrelee 290
                  +++++
  EGE27840.1 300 WQAVKK 305
                 444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2541.69
//
Query:       EGE27841.1  [L=495]
Description: putative DNA helicase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-10   38.6   3.2    6.9e-07   29.1   0.2    2.6  3  UvrD-helicase    UvrD/REP helicase N-terminal domain
    1.9e-09   38.0   0.0    5.3e-09   36.6   0.0    1.8  1  AAA_19           AAA domain
    9.8e-09   35.2   0.0    1.8e-05   24.6   0.0    2.4  2  AAA_30           AAA domain
    9.4e-08   31.8   0.0    1.6e-07   31.0   0.0    1.4  1  UvrD_C           UvrD-like helicase C-terminal domain
    2.9e-07   30.2   0.0    7.7e-07   28.8   0.0    1.8  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    2.8e-06   27.3   0.0       0.87    9.3   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0076   16.6   0.7      0.014   15.8   0.0    1.8  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.025   15.1   0.0      0.091   13.3   0.0    1.9  2  ABC_tran         ABC transporter
      0.059   13.5   0.0       0.14   12.3   0.0    1.6  1  DUF305           Domain of unknown function (DUF305)
      0.067   13.1   0.0       0.14   12.1   0.0    1.5  1  MobB             Molybdopterin guanine dinucleotide synthesis
       0.18   11.2   0.5        4.4    6.7   0.0    2.5  2  PhoH             PhoH-like protein


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00044      0.71       2      30 ..      12      42 ..      11      53 .. 0.87
   2 ?   -2.3   0.0       1.5   2.5e+03      91     111 ..      73      93 ..      63     144 .. 0.78
   3 !   29.1   0.2   4.2e-10   6.9e-07     258     302 ..     215     256 ..     213     261 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00044
                   SHHHHHHHHS..-SSEEEEEE-TTSSHHHHH CS
  UvrD-helicase  2 npeqreaias..lggpilveAsAGsGKTfvl 30
                   ++eq +a+    +g+++ ++A AG+GKT++l
     EGE27841.1 12 TKEQLAALDMakTGQSFKIVAYAGAGKTTTL 42
                   5788888776669****************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.5
                    TSEEEEHHHHHHHHHHHHHGG CS
  UvrD-helicase  91 eanisTlHsfcqkilkkeanr 111
                    ++  +T+Hs++ + ++++   
     EGE27841.1  73 NIRCQTFHSLAFRHVNRDVTA 93 
                    567789999999988887655 PP

  == domain 3  score: 29.1 bits;  conditional E-value: 4.2e-10
                    SEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG--GGGGTB CS
  UvrD-helicase 258 keiliDEyQDTnkiQyrilkllasgheelfmvGDpkQsIYgFRgA 302
                    ++il DE+QD ++    ++  l+++ ++++ vGD  Q IY++RgA
     EGE27841.1 215 DFILFDEAQDADPL---MMGALIRQDKQTIYVGDAHQQIYEWRGA 256
                    68**********97...8999999999*****************9 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   3.2e-12   5.3e-09       2     144 ..      16     252 ..      15     254 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 3.2e-12
      AAA_19   2 reave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal...................... 77 
                  +a++ a + + + ++a +G GKT++lk i + l  +g       l +af++  a+  +++    + + +T+H+la+                      
  EGE27841.1  16 LAALDmAKTGQSFKIVAYAGAGKTTTLKLISENLRGRG-------LYLAFNKAIAHDAQNKF-PPNIRCQTFHSLAFrhvnrdvtakislprltpsrla 106
                 56666677888999****************99999888.......88999999999999888.77889********9********************** PP

      AAA_19  78 .......................................................................................ldfddllteale 89 
                                                                                                         ++ +       
  EGE27841.1 107 nelglraistervidgikkpvtltpaklanivseaittfcktssaypaprhitapnwmsdadakmlqqtlypafeqrwlqsidprhqAGISH-----DI 200
                 **********************************************************9999999999999999999988776554422222.....23 PP

      AAA_19  90 lleeaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQliyv 144
                 +l+  + ++++  ++ ++ DE+qd d  ++ +L++    ++k+ + vGD++Q iy+
  EGE27841.1 201 YLKLWTLSDPIIPADFILFDEAQDADpLMMGALIR----QDKQTIYVGDAHQQIYE 252
                 444333455676999***********444455554....455689*********97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.1e-08   1.8e-05       4      82 ..      13      91 ..      10     141 .. 0.83
   2 !    8.3   0.0    0.0011       1.7      84     160 ..     209     279 ..     164     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.1e-08
      AAA_30  4 aeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelg..ieastiakllkrlk...g 82
                +eQ aa++ + t++     ++++AG+GKtt+lk + e ++ +g   + lA +++ A++ ++++   i+++t ++l  r+     
  EGE27841.1 13 KEQLAALDMAKTGQ--SFKIVAYAGAGKTTTLKLISENLRGRG---LYLAFNKAIAHDAQNKFPpnIRCQTFHSLAFRHVnrdV 91
                79999997555555..57789*******************888...99***********99876559*******9999875551 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0011
      AAA_30  84 arlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlveaagigtaeLtevvRqkes 160
                   + p++ ++ DEa  +d  ++ al+++ ++     i vGD +Q       g+l+ +      +++ Lt+ +R+ e+
  EGE27841.1 209 DPIIPADFILFDEAQDADPLMMGALIRQDKQ----TIYVGDAHQQIYEW-RGALNAMK-RLPYPQTLLTQSFRFGEP 279
                 4578899******************997655....9*******965433.44455552.345677778888888664 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     1e-10   1.6e-07     288     344 ..     424     477 ..     352     482 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1e-10
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 288 piiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfi 344
                  ++T H++KGlE++ V + +   + +    s   k   EE Rl+YVa TR k+ L i
  EGE27841.1 424 VVSTAHKSKGLEWNRVQISD---DFLYDINSLAVKITPEELRLLYVACTRGKNLLDI 477
                 589*************9999...55555777779999***************99866 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   4.7e-10   7.7e-07       3      49 ..     424     475 ..     422     477 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 4.7e-10
    UvrD_C_2   3 yaltihkaQGsefpaVivfdpdlaaarmgel.......rrrlLYtavTRArekl 49 
                 +++t hk++G+e++ V++ d+     + + l         rlLY+a+TR +  l
  EGE27841.1 424 VVSTAHKSKGLEWNRVQISDDF-LY-DINSLavkitpeELRLLYVACTRGKNLL 475
                 5899**************4443.33.334455799999***********99876 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0046       7.5       5      53 ..      32      82 ..      30      95 .. 0.70
   2 !    8.1   0.0    0.0013         2      61     183 ..     212     333 ..     185     358 .. 0.73
   3 !    9.3   0.0   0.00053      0.87     170     232 ..     410     477 ..     373     479 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0046
  Viral_helicase1  5 GvpGcGKStlirkllrts....liltvnrptaelltegkpklpnlsvrtvdsf 53
                     + +G+GK+t ++ + ++     l l + ++ a+++ ++ +++pn ++ t+ s+
       EGE27841.1 32 AYAGAGKTTTLKLISENLrgrgLYL-AFNK-AIAHDAQNKFPPNIRCQTFHSL 82
                     569******8776666558854333.3333.6777777789999999988875 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0013
  Viral_helicase1  61 tkgkililDEylllhaGyilllaalskaklvilfGDplQipfhsrna..sfllahlpssl...shrvgrrttyllpsdvaeilsak.vgtevev 148
                        ++++++DE++ +++ ++ +l++++k  + i +GD  Q  ++ r a   +++  +p +l   s r+g     ++++ + ++l+++  ++++  
       EGE27841.1 212 IPADFILFDEAQDADPLMMGALIRQDK--QTIYVGDAHQQIYEWRGAlnAMKRLPYPQTLltqSFRFGEP-IARIANVFLKALNENiPLKGNPN 302
                      4589************99998888777..69******998887664311233334444446667777777.78888888888888866666666 PP

  Viral_helicase1 149 ersgelkvetepkgqekvlvyltftqalkealgvr 183
                      ++s+    ++  +g   + ++l+ t+a+  ++  +
       EGE27841.1 303 QSSILA--KSLVHGA--KDAILCRTNATAMSHLLD 333
                      666666..7777777..888888888888888766 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00053
  Viral_helicase1 170 ltftqalkealgvrevttvhevqGltfdkVtlvllketdlelis.......esrenllvAlTRhrkslvi 232
                       +    ++ ++ +  v+t h   Gl++++V++  +     ++ s       e+   l+vA+TR ++ l i
       EGE27841.1 410 KAINSLTMPSHADYVVSTAHKSKGLEWNRVQISDDFL--YDINSlavkitpEELRLLYVACTRGKNLLDI 477
                      2222333334444499***************954422..2222233456778899********9998866 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.3e-06     0.014      14     106 ..      17     110 ..      12     160 .. 0.66
   2 ?   -3.7   0.2       8.5   1.4e+04     139     149 ..     217     227 ..     214     239 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.3e-06
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa......ipysalaqalareellrqlldeaesaeleawrekleeala 106
                 +al+++++g  ++  ++ ++G GK++ ++ + + l+++g +++  k+  ++++      i+ +++ +++ ++++ r++ ++ +  +++  + +l  +l+
  EGE27841.1  17 AALDMAKTG--QSFKIVAYAGAGKTTTLKLISENLRGRGLYLAFNKAIAHDAQnkfppnIRCQTFHSLA-FRHVNRDVTAKIS--LPRLTPSRLANELG 110
                 678888888..578899*********************8888888887774442333334446666666.3377777766633..33333444444444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.5
      AAA_16 139 lvlDdlqwade 149
                 +++D++q+ad+
  EGE27841.1 217 ILFDEAQDADP 227
                 78999999987 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.6e-05     0.091       9      78 ..      23      90 ..      20     144 .. 0.75
   2 ?   -1.9   0.0       2.7   4.3e+03      23      42 ..     404     423 ..     401     446 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.6e-05
                ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  9 kegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvre 78
                k g+   iv   GaGK+t lkl++++l+   G  l  +k + ++  +++  +i++ + ++  f+++ +r+
  EGE27841.1 23 KTGQSFKIVAYAGAGKTTTLKLISENLRG-RGLYLAFNKAIAHDAQNKFPPNIRCQTFHSLAFRHV-NRD 90
                578888999999**************985.677666688888888888888888877776666665.444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.7
                 SHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  23 GKStLlkllagllkpteGei 42 
                 G +t+ k++  l+ p   + 
  EGE27841.1 404 GTTTITKAINSLTMPSHADY 423
                 77999999999998854443 PP

>> DUF305  Domain of unknown function (DUF305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.7e-05      0.14      69     116 ..     150     197 ..     121     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.7e-05
                 -----HHHHHHTT---HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH CS
      DUF305  69 aeaseaeeaampgmaseaelaalraasgadfdrlFlelMirhHqgave 116
                 ++  + ++   p+ +s+a+ ++l++   ++f++ +l+ + ++Hq++++
  EGE27841.1 150 SAYPAPRHITAPNWMSDADAKMLQQTLYPAFEQRWLQSIDPRHQAGIS 197
                 556677788899*********************************996 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.4e-05      0.14       2      41 ..      28      67 ..      27      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.4e-05
        MobB  2 lgivgksgsGKTtLleklipelkarglrvgtiKhahhgfd 41
                ++iv++ g+GKTt l+ + + l+ rgl ++  K  +h+ +
  EGE27841.1 28 FKIVAYAGAGKTTTLKLISENLRGRGLYLAFNKAIAHDAQ 67
                689**************************99998888765 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.081   1.3e+02       6      34 ..      12      40 ..       9      46 .. 0.90
   2 ?    6.7   0.0    0.0027       4.4     121     158 ..     215     249 ..     171     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.081
                SHHHHHHHHHHHH-SEEEEE--TTSSTTH CS
        PhoH  6 tkeQkeylealkkndivfaiGpaGtGKty 34
                tkeQ ++l++ k+ +   +++ aG+GKt 
  EGE27841.1 12 TKEQLAALDMAKTGQSFKIVAYAGAGKTT 40
                789999******999999*********95 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0027
                 EEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----- CS
        PhoH 121 afvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqi 158
                  f+++DEAQ++ +  m   l+R ++  + + +Gd +q+
  EGE27841.1 215 DFILFDEAQDADPLMMG-ALIRQDK--QTIYVGDAHQQ 249
                 69*********998765.4566555..56777888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3358.40
//
Query:       EGE27842.1  [L=247]
Description: GntR family transcriptional regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-19   68.6   0.0    8.9e-19   67.7   0.0    1.4  1  UTRA       UTRA domain
    7.5e-19   67.2   0.1    1.3e-18   66.3   0.1    1.4  1  GntR       Bacterial regulatory proteins, gntR family
    2.8e-05   24.0   0.1    6.1e-05   22.9   0.1    1.5  1  HTH_11     HTH domain
    0.00024   21.0   0.1    0.00049   20.0   0.1    1.4  1  HTH_Crp_2  Crp-like helix-turn-helix domain
    0.00068   19.3   0.1     0.0014   18.3   0.1    1.5  1  HTH_DeoR   DeoR-like helix-turn-helix domain
     0.0013   18.6   0.0     0.0032   17.4   0.0    1.6  1  HTH_36     Helix-turn-helix domain
     0.0017   18.3   0.0     0.0074   16.2   0.0    2.0  2  MarR       MarR family
     0.0031   17.0   0.0     0.0079   15.7   0.0    1.7  1  HTH_24     Winged helix-turn-helix DNA-binding
     0.0043   17.4   0.1     0.0083   16.4   0.1    1.4  1  ANT        Phage antirepressor protein KilAC domain
     0.0065   16.1   0.0      0.019   14.7   0.0    1.8  2  HTH_41     Helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.5   0.1      0.027   14.3   0.1    1.6  1  MarR_2     MarR family
       0.03   14.4   0.0      0.059   13.5   0.0    1.4  1  HTH_28     Helix-turn-helix domain
       0.04   13.9   0.0      0.088   12.8   0.0    1.5  1  HTH_29     Winged helix-turn helix
      0.041   13.7   0.0       0.11   12.3   0.0    1.7  1  HTH_23     Homeodomain-like domain
      0.061   13.1   0.0       0.26   11.0   0.0    2.0  2  HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
      0.069   12.6   0.0       0.12   11.8   0.0    1.4  1  RepL       Firmicute plasmid replication protein (RepL)
      0.096   12.6   0.0       0.17   11.8   0.0    1.4  1  TrmB       Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   8.4e-22   8.9e-19      32     140 ..     136     241 ..     133     242 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 8.4e-22
                 SEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE--HHHHHHHTSTTT-EEEEEEEEEEETTSCEEEE CS
        UTRA  32 epvlrieRlrladgepvaleesylpaslvpdlleedleegslyayleerlgvpitraeetiearladaeeaelLgisagspvLviervtydadgrpvey 130
                 ++++++   ++ d+ p+++ee++++as++ d+ ++d++   + +yl +  +vp+ +++ +i+a la++ ++++L+i+ ++p L+ +r t ++ g++v++
  EGE27842.1 136 DKLYQVCIAHYGDDLPIQYEERWVNASVIADFINQDFNIVNTSDYLID--HVPLEYGDYQIHAKLASDTICQILQIPINEPTLLHTRQTKSQ-GKLVTF 231
                 68999*******************************************..******************************************.****** PP

                 EEEEEETTTE CS
        UTRA 131 srsyyrgdrf 140
                 +  +++++rf
  EGE27842.1 232 VNMWHPASRF 241
                 *********9 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.1   1.3e-21   1.3e-18       2      64 .]      12      74 ..      11      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 1.3e-21
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y +++ ++ + I++g ++ G ++P+e  La+ fgVsr+tv++A+++Leae ++errqg+Gt+V
  EGE27842.1 12 YLRIKTAILDNIHAGIWASGVAIPAEITLAEDFGVSRMTVNRAIKELEAERVLERRQGSGTYV 74
                889***********************************************************9 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   5.8e-08   6.1e-05      20      43 ..      39      62 ..      38      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 5.8e-08
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelg 43
                +LAe ++vSr+tv r Ik+Le+  
  EGE27842.1 39 TLAEDFGVSRMTVNRAIKELEAER 62
                79*******************975 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   4.6e-07   0.00049      27      55 ..      40      68 ..      36      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.6e-07
                HHHHTTSSHHHHHHHHHHHHHTTSEEETE CS
   HTH_Crp_2 27 lAsmlGltretvsrilseLkreglisrgr 55
                lA+  G++r tv+r+++eL+ e +++r++
  EGE27842.1 40 LAEDFGVSRMTVNRAIKELEAERVLERRQ 68
                8999**********************653 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.4e-06    0.0014      20      51 ..      40      71 ..      38      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-06
    HTH_DeoR 20 lvellgvSeaTiRRDLneLeeqglltRthGGa 51
                l+e +gvS +T+ R ++eLe++ +l+R  G  
  EGE27842.1 40 LAEDFGVSRMTVNRAIKELEAERVLERRQGSG 71
                89*************************98865 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     3e-06    0.0032      30      50 ..      39      59 ..      28      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3e-06
      HTH_36 30 tlakrlglsknTvsraikeLe 50
                tla+++g+s+ Tv raikeLe
  EGE27842.1 39 TLAEDFGVSRMTVNRAIKELE 59
                9*******************9 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     7e-06    0.0074      22      51 ..      39      68 ..      28      71 .. 0.91
   2 ?   -0.9   0.0       1.5   1.6e+03      11      29 ..     216     234 ..     215     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7e-06
                HHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 22 eLakklgvskstvtrvldrLekkGlieRsk 51
                 La+ +gvs++tv r++++Le +  +eR++
  EGE27842.1 39 TLAEDFGVSRMTVNRAIKELEAERVLERRQ 68
                79********************99999987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
                 HHHHSTTEEHHHHHHHHTS CS
        MarR  11 ilyeqgplsvseLakklgv 29 
                 +l++++  s+ +L  ++++
  EGE27842.1 216 LLHTRQTKSQGKLVTFVNM 234
                 7999999******999886 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.5e-06    0.0079      23      46 ..      40      63 ..      39      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.5e-06
      HTH_24 23 LAerlglSpstvnrrlkrLeeeGl 46
                LAe  g+S+ tvnr +k+Le e +
  EGE27842.1 40 LAEDFGVSRMTVNRAIKELEAERV 63
                89******************9865 PP

>> ANT  Phage antirepressor protein KilAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   7.8e-06    0.0083      30     101 ..      41     113 ..      37     116 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.8e-06
         ANT  30 Akllg...igenrlfelLrekgilyrqkgsgqnlpyqdyidkglfevktqtvrhsdgsektktqtrvTqkGqefl 101
                 A + g   ++ nr+++ L+++++l r++gsg++++ q+y ++ ++ev+    ++   + + +   ++Tqk ++f+
  EGE27842.1  41 AEDFGvsrMTVNRAIKELEAERVLERRQGSGTYVAQQKY-NNAHIEVRNIA-KDIRERFHRYHAQVITQKTLDFM 113
                 666666679******************************.55888998888.44445566666777888888776 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.8e-05     0.019      12      48 .]      40      74 ..      34      74 .. 0.87
   2 ?   -2.1   0.0       3.1   3.3e+03      37      48 .]     221     232 ..     221     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.8e-05
      HTH_41 12 lakeleLSvGlvQkALklLeddkaislerrGrlGtfl 48
                la+++++S+ +v  A+k Le++++  lerr   Gt++
  EGE27842.1 40 LAEDFGVSRMTVNRAIKELEAERV--LERRQGSGTYV 74
                89*********************8..67776678886 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.1
      HTH_41  37 slerrGrlGtfl 48 
                 +++++G+l tf+
  EGE27842.1 221 QTKSQGKLVTFV 232
                 6899***99996 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.6e-05     0.027      27      57 ..      40      70 ..      38      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-05
                HHHHHTSSHHHHHHHHHHHHHTTSEEEEESS CS
      MarR_2 27 larrlglsksavsrilkrLvaaGLverrpgp 57
                la+ +g+s+ +v+r++k+L+a   +err g+
  EGE27842.1 40 LAEDFGVSRMTVNRAIKELEAERVLERRQGS 70
                8999************************885 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.6e-05     0.059      10      50 ..      29      70 ..      28      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.6e-05
      HTH_28 10 aaGhsvre...aArelgisrrtvyrWikryeegGiagLvprrrr 50
                a+G+++++   +A+ +g+sr tv r ik +e++ +  L+ r ++
  EGE27842.1 29 ASGVAIPAeitLAEDFGVSRMTVNRAIKELEAERV--LERRQGS 70
                78888999999*********************887..7777775 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.3e-05     0.088      18      51 ..      40      71 ..      38      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.3e-05
      HTH_29 18 iAkllglsrrtvyrwlkrfeegGlaalldrrrsg 51
                +A+  g+sr tv+r++k  e++++  l +r +sg
  EGE27842.1 40 LAEDFGVSRMTVNRAIKELEAERV--LERRQGSG 71
                68999*****************93..44444444 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0001      0.11      24      44 ..      41      61 ..      39      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
      HTH_23 24 AreLgvsrrTvyrwlkryree 44
                A+ +gvsr+Tv r +k  ++e
  EGE27842.1 41 AEDFGVSRMTVNRAIKELEAE 61
                899*************97545 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00025      0.26      24      44 ..      39      59 ..      35      61 .. 0.89
   2 ?   -2.3   0.0       3.7   3.9e+03      34      48 ..     100     114 ..      97     116 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
   HTH_Tnp_4 24 dLayrFgvsestvsrifhkwv 44
                 La  Fgvs+ tv+r +++++
  EGE27842.1 39 TLAEDFGVSRMTVNRAIKELE 59
                5999*************9975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.7
   HTH_Tnp_4  34 stvsrifhkwvdlLa 48 
                  +++ i +k++d++a
  EGE27842.1 100 YHAQVITQKTLDFMA 114
                 578889999999998 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.12      61     114 ..      16      74 ..      11      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
        RepL  61 vyylidnln....snntliatnRelaeetgislktvsetlkileeanilkk.kanGvlv 114
                    ++dn++     + + i  +  lae+ g+s  tv++ +k le   +l + + +G +v
  EGE27842.1  16 KTAILDNIHagiwASGVAIPAEITLAEDFGVSRMTVNRAIKELEAERVLERrQGSGTYV 74 
                 555667766433357788999999*********************99997615678887 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00016      0.17      27      62 ..      39      79 ..      36      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
                HHCCCTTSSCHCHHHHHHHHHHCTSEEEESST.....TTEE CS
        TrmB 27 eiaeelgvprskvYevLrsLedkGlVerekgr.....pklY 62
                ++ae+ gv+r +v++++++Le   + er++g+      ++Y
  EGE27842.1 39 TLAEDFGVSRMTVNRAIKELEAERVLERRQGSgtyvaQQKY 79
                689**************************998766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1818.92
//
Query:       EGE27843.1  [L=571]
Description: ferredoxin-dependent glutamate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-85  287.8   0.0    1.5e-85  287.5   0.0    1.1  1  Glu_synthase  Conserved region in glutamate synthase
    0.00044   19.4   0.3    0.00067   18.8   0.3    1.2  1  FMN_dh        FMN-dependent dehydrogenase
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.23   11.4   0.0    1.4  1  Ubiq-assoc    Ubiquitin-associated


Domain annotation for each model (and alignments):
>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.5   0.0   2.6e-89   1.5e-85      54     366 ..     162     489 ..     117     491 .. 0.94

  Alignments for each domain:
  == domain 1  score: 287.5 bits;  conditional E-value: 2.6e-89
                   -GGGS--HHHHHTTEE---B-TTTS-HHHHHHHHHHHHHHT-B-EETTS---GGGGS-----SEEEE-TT-TT--.............HHHHHH-SE CS
  Glu_synthase  54 kleevepalkikkriltsamSyGalseeahealakamnrlgtksntGEGGedeerlktakdvaikQvasgrFGvt.............eeyLnnaka 137
                     e+++++  + + + +samS+Gals  a e+l+k++++ g + +tGEG +++++ k++ d+ i Q++++ FG +             + +L++ k 
    EGE27843.1 162 GNERCQQPYDL-SVFNISAMSFGALSAAAIESLNKGAKEGGFAHDTGEGSISPYHQKHGGDL-IWQLGTAYFGCRddegrfnpeafrqRAVLSQVKM 256
                   55666665555.4699**********************************************.************************999******* PP

                   EEEE---TTSTTS--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH....HHHTT-SE CS
  Glu_synthase 138 leikiaQGakpgeGgqlpgeKvseeiakiRkikpgvdliSPaphhdiysiedlaqliedLkevnkeakvsvKlvaeagvetiaag....vakanadi 230
                   +eik++QGakpg+Gg lp++K+++eia +R i+ g d iSP+ h +++ + +l ++ + L+e++  ++v+ Kl  + + e +a+     + ++ +d+
    EGE27843.1 257 IEIKLSQGAKPGKGGVLPASKITTEIALTRDIPMGIDCISPPTHPEFSTPTELVHFWQRLRELSGGKPVGFKLCIGMPWEFMAIVkamiKEDNYPDF 353
                   ******************************************************************************99988875544556789** PP

                   EEEE-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHTT--S---GGGT--TTSS CS
  Glu_synthase 231 ilidGleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaalialgCimarvChtntCpvGv 327
                   i+idG eGGTGA+p ++++ +G+Pl+ al  v++tl+  g+rd++++ ++G++ +g d++  + lGAd  + +++ ++a+gCi+ r Chtn+Cp+Gv
    EGE27843.1 354 IVIDGAEGGTGAAPIEFMDSVGMPLVDALIFVQNTLVGAGIRDKIKVGVSGKVISGFDIARLMSLGADWCNSARGFMFAVGCIQSRSCHTNKCPTGV 450
                   ************************************************************************************************* PP

                   S---HHHH..TT----HHHHHHHHHHHHHHHHHHHHHHT CS
  Glu_synthase 328 atqdpeLrkrlkveekaervvnyikalaeevrellaalg 366
                   atqdp  +k+ ++  k +rv n+ k + + ++e+++ +g
    EGE27843.1 451 ATQDPARQKAIDIPDKSRRVSNFHKNTLKALAEIVGCAG 489
                   *************************99999999988777 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.3   1.1e-07   0.00067     268     309 ..     394     435 ..     363     442 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.1e-07
                 H..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHH CS
      FMN_dh 268 vggrievlvDgGirrGsDvlkAlalGAdavllGRpflyglaa 309
                 ++++i+v v+g + +G D+++ + lGAd + ++R f++++ +
  EGE27843.1 394 IRDKIKVGVSGKVISGFDIARLMSLGADWCNSARGFMFAVGC 435
                 4679**********************************9876 PP

>> Ubiq-assoc  Ubiquitin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.9e-05      0.23       8      20 ..     410     422 ..     407     427 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHH---S CS
  Ubiq-assoc   8 mEiAkLMSLGLsi 20 
                 + iA+LMSLG ++
  EGE27843.1 410 FDIARLMSLGADW 422
                 68********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4365.56
//
Query:       EGE27844.1  [L=247]
Description: twin-arginine translocation protein subunit TatC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-61  206.0  24.0    7.3e-61  205.6  24.0    1.1  1  TatC      Sec-independent protein translocase protein (TatC)
  ------ inclusion threshold ------
        4.3    7.2   4.6         38    4.2   1.3    2.5  2  TMEM154   TMEM154 protein family


Domain annotation for each model (and alignments):
>> TatC  Sec-independent protein translocase protein (TatC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.6  24.0   8.1e-65   7.3e-61       2     207 .]      16     225 ..      15     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 205.6 bits;  conditional E-value: 8.1e-65
                 HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCCHHHHC..CTTS-EE--SSS-HHHHHHHHHHHHHHHHSHHHHHHHHHCCCTTTTS---STTTHHH CS
        TatC   2 hLeeLrkrlirallavaiafiitfvfaeeliafllepleea.eeevelivlspleafllklkvslvaglvlasPvilyqlwafvapgLykherrlvlvf 99 
                 h+ eLr r+ir++lav+++f++++ f++el++++ +pl +  ++e++li+++++ +fl+ ++++++++l++++P+il+q+w f++pgLy he+r +l++
  EGE27844.1  16 HFIELRGRFIRIFLAVLVVFLALVGFSRELYDLISNPLVALlPNESSLIATDVASGFLAPIRLTFFTALFITVPFILMQIWGFISPGLYHHEKRTALPL 114
                 999********************99**************999999****************************************************** PP

                 HHHHHHHHHHHHHHHHHTHHHHHHHHHT...TTTSSTTEEHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTSS-HHHHHTTHHHHHHHHHHHHHHH-S CS
        TatC 100 liaslllfllGaafayfvvlplvlkfll...seevepllslseylsfvlllllafgiaFelPlvlvllarlglvsaetlrkkrryaivvilvvaavltP 195
                 l++s++lf+lG++fayf+vl ++lkf++    ++v p+ ++++yl+fv++lll+fg++Fe+P+v+++l+ + lvs++ l++krry+iv+++ vaav+tP
  EGE27844.1 115 LFSSIALFYLGVTFAYFIVLVPALKFFVvfaPDNVLPMTDIDSYLNFVIKLLLVFGVMFEIPVVTLILVLMRLVSIASLTNKRRYIIVGCFAVAAVITP 213
                 ****************************999888999************************************************************** PP

                 .SHHHHHHHHHH CS
        TatC 196 pdvisqlllavP 207
                 pd  s+l+la+P
  EGE27844.1 214 PDGASMLMLAIP 225
                 ***********9 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.3    0.0043        38      60      87 ..     171     198 ..     154     199 .. 0.81
   2 ?    3.6   0.1    0.0064        58      55      79 ..     215     239 ..     212     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0043
     TMEM154  60 lmiiiPlvllillllvviiliqkkkrkr 87 
                 +m  iP v lil+l+  + +    +++r
  EGE27844.1 171 VMFEIPVVTLILVLMRLVSIASLTNKRR 198
                 6889****99999998877776666555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0064
     TMEM154  55 qlelvlmiiiPlvllillllvviil 79 
                 + + +lm++iP+ ll  l l+++ l
  EGE27844.1 215 DGASMLMLAIPMCLLFELGLIMAKL 239
                 5678**********99887776644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1890.46
//
Query:       EGE27845.1  [L=178]
Description: twin-arginine translocation protein subunit TatB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.4e-09   34.5   0.1    1.8e-08   33.6   0.1    1.6  1  MttA_Hcf106  mttA/Hcf106 family
     0.0009   19.2   6.3     0.0012   18.8   6.3    1.1  1  PriC         Primosomal replication protein priC
  ------ inclusion threshold ------
      0.048   13.1   1.8      0.061   12.8   1.8    1.1  1  PIEZO        Piezo
      0.053   13.1   3.8      0.072   12.7   3.8    1.1  1  HAUS6_N      HAUS augmin-like complex subunit 6 N-terminus
       0.43    9.8   2.9        0.5    9.6   2.9    1.1  1  TMPIT        TMPIT-like protein
        1.2   10.2   3.7          1   10.5   0.7    2.0  2  DUF5320      Family of unknown function (DUF5320)


Domain annotation for each model (and alignments):
>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1     6e-12   1.8e-08       1      47 [.       5      61 ..       5     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 6e-12
                 S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH-..........- CS
  MttA_Hcf106  1 lgapelliIlvValllFGpkkLPEvaraLGktLreFkkavkeleee..........n 47
                 lg+ el + +++al++ Gp+kLP +ar LG+    F  a + l++e          +
   EGE27845.1  5 LGFFELTLFGIIALIVLGPDKLPVAARTLGRWYGMFHRASQKLQTEitnelqlletQ 61
                 5889999**************************************966666555550 PP

>> PriC  Primosomal replication protein priC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   6.3     4e-07    0.0012      33     103 ..      39     114 ..      38     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4e-07
                 S--S--SSHHHHHHHHHHHHHHHHHHHTTT-.HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSST............T CS
        PriC  33 LFsqrsaklsdYleeiektlkqLekaveenr.aeqvaflaerlvaqieAlqrelattelrkkeakqkkksr.......k 103
                 +F+  s+kl+   +ei ++l+ Le+++  ++  ++++ +  r++aq++Al+r l +t+++++++++++ ++        
  EGE27845.1  39 MFHRASQKLQ---TEITNELQLLETQQMLKKeLDEIRQSEARIKAQMNALERSLDRTKTQQQNTQKNQPAKelpnhddF 114
                 6888888887...69*************9999**************************999999987766555555440 PP

>> PIEZO  Piezo
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.8     2e-05     0.061      95     140 ..      62     110 ..      34     151 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
       PIEZO  95 akikkevkarkeee...kksleqlkrqmerikakqqkikkgkkeseeee 140
                 + +kke+++ +++e   k++++ l r+++r k++qq ++k++ ++e ++
  EGE27845.1  62 QMLKKELDEIRQSEariKAQMNALERSLDRTKTQQQNTQKNQPAKELPN 110
                 3334443333333312255666666677777766666555533333322 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.8   2.4e-05     0.072     145     213 ..      40     104 ..      29     116 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
     HAUS6_N 145 lsklvaahrvslrrflrekaaadrarqkyqenaqllekkerelraeleelqaelkaekeaakkekkeas 213
                  ++++++ + +++  l+ +++    +q++++++++++++e  ++a++ +l++ l+  k ++++++k+++
  EGE27845.1  40 FHRASQKLQTEITNELQLLET----QQMLKKELDEIRQSEARIKAQMNALERSLDRTKTQQQNTQKNQP 104
                 455666666666666655554....48899999999999999999999999888855555444444443 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.9   0.00017       0.5      19      67 ..      55     103 ..      39     145 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00017
       TMPIT  19 keykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeee 67 
                  ++ ++ + l+k  +++++++++ k ++++l++sl+++k+++++ ++++
  EGE27845.1  55 LQLLETQQMLKKELDEIRQSEARIKAQMNALERSLDRTKTQQQNTQKNQ 103
                 2344455556666677777777777777777777777776654333322 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   0.00034         1      44      96 ..      31      75 ..      19      78 .. 0.70
   2 ?    1.3   0.2      0.24   7.2e+02      75      96 ..      75      96 ..      72      99 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
     DUF5320 44 rglgrgfgrrrraggarla..aaetaeaskeeekelLeeqaeaLeeeleaikkrl 96
                r lgr++g+         +  a+++ +++  +e +lLe q ++L++el++i+++ 
  EGE27845.1 31 RTLGRWYGM---------FhrASQKLQTEITNELQLLETQ-QMLKKELDEIRQSE 75
                445555555.........1223345567777788877765.8*********9875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.24
     DUF5320 75 kelLeeqaeaLeeeleaikkrl 96
                ++ +++q++aLe++l+  k + 
  EGE27845.1 75 EARIKAQMNALERSLDRTKTQQ 96
                5668999********9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2263  (0.12622); expected 358.6 (0.02)
Passed bias filter:                      985  (0.0549389); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 1334.99
//
Query:       EGE27846.1  [L=77]
Description: twin-arginine translocation protein subunit TatA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-16   58.4   0.4    3.4e-16   58.3   0.4    1.2  1  MttA_Hcf106  mttA/Hcf106 family
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.12   11.9   0.0    1.1  1  DUF1189      Protein of unknown function (DUF1189)


Domain annotation for each model (and alignments):
>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.4   3.8e-20   3.4e-16       1      49 [.       4      52 ..       4      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 3.8e-20
                 S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH---X CS
  MttA_Hcf106  1 lgapelliIlvValllFGpkkLPEvaraLGktLreFkkavkeleeenek 49
                 l+++++li+lvV++++FG +kL  +++ LG++ + Fk+avke+e+ +++
   EGE27846.1  4 LSITHWLILLVVVVIIFGTSKLKNAGKDLGSAVKGFKEAVKEEEKPKIT 52
                 69*****************************************987555 PP

>> DUF1189  Protein of unknown function (DUF1189)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.4e-05      0.12      27      82 ..      11      67 ..       3      75 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.4e-05
     DUF1189 27 lYlllLslilalpisiiifyefnskinqleeliee.eipdFtiedGelqieekepii 82
                + l+++++i+ +       +++ s++++++e+++e e p++t  dG+  i e+ ++ 
  EGE27846.1 11 ILLVVVVIIFGTSKLKNAGKDLGSAVKGFKEAVKEeEKPKITNNDGKVIIAEEVKVE 67
                3344555555555555555679999999999998779**********9999995443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 603.44
//
Query:       EGE27847.1  [L=269]
Description: phosphoribosyl-AMP cyclohydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-32  110.4   0.4    6.2e-32  109.3   0.4    1.6  1  PRA-CH    Phosphoribosyl-AMP cyclohydrolase
    6.2e-11   42.6   1.3    1.4e-10   41.5   1.3    1.6  1  PRA-PH    Phosphoribosyl-ATP pyrophosphohydrolase
  ------ inclusion threshold ------
      0.055   13.2   0.0      0.093   12.5   0.0    1.4  1  DUF938    Protein of unknown function (DUF938)


Domain annotation for each model (and alignments):
>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.4     1e-35   6.2e-32       1      74 []      33     107 ..      33     107 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 1e-35
                 EEEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS.-SSTTSBSSS-- CS
      PRA-CH   1 mlaymnkealektletgkavyySrsrkklWkKGetSgnvqkvkeirlDcDqDalllkveqkg.aaCHtgkesCFy 74 
                 m+a+ nk ale+tl+t++avy+Srsr klW+KGetSg++q v++i++DcD+D+++l+++q g  aCHtg++sCF+
  EGE27847.1  33 MVAWQNKMALEQTLKTKEAVYFSRSRGKLWHKGETSGHTQIVHDIYTDCDHDVIILSITQIGgIACHTGRRSCFF 107
                 9************************************************************736**********6 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   1.3   2.3e-14   1.4e-10       3      80 ..     159     253 ..     157     256 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 2.3e-14
                 HHHHHCT----SS----.-HHHHHH....HHHHHHHHHHHHHHHT-SC............HHHHHHHHHHHHHHHHHHHHHHCT--CHHHHHHHH CS
      PRA-PH   3 efhrligerkpetPeas.taelasl....raaligEEavElleaaseg............dlaeladelaDllYvtygllvllGidldavfeevh 80 
                 ++  +++erk++   +s  a+l+++    +++++gEEavE ++aa+e                +l++e+aD++++ +++l +lG+++++v++e++
  EGE27847.1 159 RLDATLNERKNANKDNSyVASLYHKglnkILEKVGEEAVESIIAAKELerakntnencdkLAHDLVYEVADTWFHQMVALSKLGLSAQDVIDELA 253
                 677899999999999999******9********************98888999999998566789****************************97 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.6e-05     0.093      28      95 ..      92     159 ..      84     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
      DUF938  28 rvLEiasGtGqHAvffApalpnlkwqpsdqdeelresiaawadelalsnlkpPleldvtaevapvere 95 
                 ++  ia  tG+  +ff ++  + +wq +++  +  + i    +++a++n  + ++  +t++  +v + 
  EGE27847.1  92 QIGGIACHTGRRSCFFKKLDDQGNWQITNHVIKDPDQIYGNNQQTATKNNASNITATITQSSSDVLSR 159
                 57789*****************************9*************************99998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1023  (0.0570584); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2152.75
//
Query:       EGE27848.1  [L=63]
Description: 50S ribosomal protein L35 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-23   82.8   9.1      2e-23   82.7   9.1    1.0  1  Ribosomal_L35p  Ribosomal protein L35


Domain annotation for each model (and alignments):
>> Ribosomal_L35p  Ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   9.1   1.1e-27     2e-23       2      60 ..       2      59 ..       1      60 [. 0.99

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 1.1e-27
  Ribosomal_L35p  2 KmKThkgakKRfkvtgsGkikrkkagkrHlltkKstkrkrrlrktalvskadakrlkkl 60
                    K+KT++ga+KRfk+t++G +krk+a+krH+ltkKs+kr+r+lr+ ++v+++d++ ++++
      EGE27848.1  2 KLKTKRGAAKRFKKTANG-FKRKQAFKRHILTKKSPKRIRQLRGCVMVHASDVASIRRM 59
                    9*****************.***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 520.17
//
Query:       EGE27849.1  [L=118]
Description: 50S ribosomal protein L20 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-47  159.1   9.7    3.4e-47  159.0   9.7    1.0  1  Ribosomal_L20  Ribosomal protein L20


Domain annotation for each model (and alignments):
>> Ribosomal_L20  Ribosomal protein L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   9.7   1.9e-51   3.4e-47       1     107 []       3     109 ..       3     109 .. 0.99

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 1.9e-51
                    XXX.XXXXXXXXXXXXX--SSS---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHCCTTS---HHHHHHH CS
  Ribosomal_L20   1 RvkrgvaarkrrkkilklakgyrgrrsklyrvakqavekalqyayrdRkkkkrdfrklwitrinaaarenglsYskfingLkkanielnRkvLadl 96 
                    Rvkrgv+a++r+kk+l +akgy+g+rs++yrva qav+ka qyayrdR++kkr+fr+lwi+rina+ar nglsYs++ingLkkan+e++R++Lad+
     EGE27849.1   3 RVKRGVQANRRHKKVLARAKGYYGARSRVYRVAVQAVMKAGQYAYRDRRNKKRSFRRLWIARINAGARLNGLSYSRLINGLKKANVEIDRRILADI 98 
                    9*********************************************************************************************** PP

                    HHH-HHHHHHH CS
  Ribosomal_L20  97 AindpeaFkal 107
                    A++d++aF+a+
     EGE27849.1  99 AMHDAAAFTAI 109
                    ********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1016.21
//
Query:       EGE27850.1  [L=31]
Description: hypothetical protein EA1_00665 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 278.49
//
Query:       EGE27851.1  [L=758]
Description: nitric oxide reductase NorB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-64  217.3  52.9    3.5e-64  217.3  52.9    2.1  3  COX1      Cytochrome C and Quinol oxidase polypeptide I


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2     0.085   1.5e+03     379     399 ..       7      27 ..       4      38 .. 0.78
   2 ?   -1.9   0.2     0.061   1.1e+03     102     131 ..     211     248 ..     178     264 .. 0.45
   3 !  217.3  52.9   1.9e-68   3.5e-64       3     432 .]     283     726 ..     281     726 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.085
                 HHHHHHHHHHHHHHHHHHHHH CS
        COX1 379 hfwllfiGlvlmflpmhilGl 399
                 h+w l+i l++ f+ + + G+
  EGE27851.1   7 HWWGLVITLIIAFILLGWGGF 27 
                 888888888888888887776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.061
                 -STTTTTTTC.......SHHHHHHHHHHH...HHHHHHH CS
        COX1 102 ttgwteYapls......evdlwllglllv...vvssllg 131
                 t+ w    pl       e  +w ++ +++   +++ l++
  EGE27851.1 211 TNNW-PHEPLIdnvptaENVMWSIASVVFllaGIGLLIW 248
                 3333.3333334444443333333322220003333333 PP

  == domain 3  score: 217.3 bits;  conditional E-value: 1.9e-68
                 HHHHHHHHHHHHHHHHHHHHHHHHHC........TCT..-HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSS-S-HHHHHHHHH.HHHHHH CS
        COX1   3 gllylilalvlllvggllgllirlql........afp..dletynqlrtlHgnlmiflfatpfilgfgnylvplllgardlafprlnalsfw.lvvlgv 90 
                   +y +l+++l++v+++lg ++++++        + p  d+  y+ +rt+H++ ++f++at+f l++g++++p++ g +d   ++l   ++w ++++ v
  EGE27851.1 283 LAKYAFLVVALFVVQIFLGGFVAHYTiegqdfygI-PvsDFIPYSLARTWHIQSALFWIATAF-LAIGLFVTPIIHGGKDPKYQKLGVDLLWvALIIVV 379
                 679**********************9444443330.2557788********************.************77777777776666664444444 PP

                 HH.HHHHHH..CS..........S-STTTTTTTC.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHHHHHHHHHHHHHHHCHHHHHH CS
        COX1  91 vl.lllsll..ga..........attgwteYaplsevdlwllglllvvvssllgainfivtilkrrapgmtvaklplfvwavlatailillalpvlala 176
                 v+ ++ ++l              +++g+ e+ +   +++w++  +++   +l++++ +++ +l   + +   +   l+  +v+++++++l++  +l+++
  EGE27851.1 380 VGsYIGQYLaiAHimpahlnfwfGHQGY-EFID--LGRFWQILKWVG---VLFWLVLMLRGVLAGFKGEGDKN---LLFIFVASVVCVGLFYGSGLFYG 469
                 44344444444114556677788****6.***9..*******99988...77799********9554433333...3335699999************* PP

                 HHHCHHHHHCT-SSSCE-HHHHHHHHHHHHTHHH.HHHHHHHHHHHHHHHHHHHT..SCCCTHHHHHHHHHHHHHHCCCCGGGGTTTSSS-HHHHHHHH CS
        COX1 177 lllllldrslgkffspgdplldqhlfWffgHpeV.yililpalgivyyilpkfag..rplfsyklsvlafililflsflvwaHHlfttglpewlkalgs 272
                  ++ +              +++++++W+++H++V ++++++a++ +++i+ ++ g   + +++  s+++++l+l++++++++HHl++tg+++ ++a+g+
  EGE27851.1 470 EHTPI--------------AIMEYWRWWVVHLWVeGFFEVFATVSIAFIFYNL-GlvSKKIATGSSIASAALFLLGGVPGTFHHLYFTGTTTPIMAIGA 553
                 *9988..............99*******************************9.77988888************************************* PP

                 HHHHHTHHHHHH....CCCHHHHCCTTS-CH.C.HHHHHHHHHHHHHH.HHHHHHHHHHTSHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHH CS
        COX1 273 vfslliavPsgl....kvfnwlatlwrgsir.f.ktpmlfflgfavlf.iigGltGvllalpsvnyvvhntywvvaHfHlvllgavvfllfaaiyyllp 364
                  fs+l++vP+++    +   w +   + ++    k+p+l+f+++a+++ +++G++G++++ p+  +++++ ++++ H+H++l+g+++fl+++++++++ 
  EGE27851.1 554 SFSALEVVPLIVlgyeGYEHWSMQR-HAKWMeRlKWPVLCFVAVAFWNmLGAGVFGFMINPPISLFYLQGLNTTPVHAHAALFGVYGFLALGFVLLIVR 651
                 ************9999555677777.44554455****************************************************************8 PP

                 HHH.SB--HHHHHHHHHHHHHHHHHHHHH.HHHHHHHT.THB......SSSST--..SCCCCHHHCHHHHHHHHHHHHH CS
        COX1 365 klt.grmlserlaklhfwllfiGlvlmfl.pmhilGll.gmp......rraadyk..sfletvpelqplnvlrtiggvl 432
                  l     +s +l+k+ fw l++Gl+lm++ +++++G++  ++      +    y   + + +++ l++l ++rt+g+v+
  EGE27851.1 652 YLRpEYRFSDKLMKTGFWGLNLGLLLMIFtSLLPIGIYqAYAsiteglW----YArsEGFLQQDFLETLRWVRTFGDVV 726
                 88877788*********************9********55554444431....33445667889************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 5533.44
//
Query:       EGE27852.1  [L=28]
Description: hypothetical protein EA1_00675 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      145  (0.00808746); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 215.42
//
Query:       EGE27853.1  [L=177]
Description: transcriptional regulator NsrR [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-24   84.4   0.1      9e-24   83.6   0.1    1.4  1  Rrf2          Transcriptional regulator
     0.0061   16.5   0.0      0.011   15.7   0.0    1.4  1  HTH_36        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.035   14.4   0.0       0.06   13.7   0.0    1.4  1  ANT           Phage antirepressor protein KilAC domain
      0.035   14.0   0.0      0.069   13.0   0.0    1.5  1  TFIIE_alpha   TFIIE alpha subunit
      0.037   14.7   0.0      0.071   13.8   0.0    1.4  1  RPA_C         Replication protein A C terminal
      0.039   13.9   0.0      0.075   13.0   0.0    1.5  1  HTH_Crp_2     Crp-like helix-turn-helix domain
      0.086   12.5   0.1       0.25   11.0   0.0    1.7  2  HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor
       0.11   12.1   0.0       0.19   11.4   0.0    1.3  1  GntR          Bacterial regulatory proteins, gntR family
       0.12   12.3   0.0       0.26   11.2   0.0    1.5  1  MarR          MarR family
       0.16   12.1   0.0       0.65   10.2   0.0    2.0  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
       0.17   11.7   0.0       0.37   10.6   0.0    1.5  1  HTH_10        HTH DNA binding domain


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.1   5.5e-27     9e-24       1      82 [.       1      83 [.       1      84 [. 0.96

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 5.5e-27
                X---HHHHHHHHHHHHHHHSSTCC-.B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHH CS
        Rrf2  1 MklsskteyalhallyLakeeeeep.vsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvra 82
                M+l++ +++al++l+yLa+ +++   v++++ia++++is+++l k++++L+k ++v s rGk+GG+rLa +p++I+++++vr+
  EGE27853.1  1 MRLTQYSDFALRVLIYLATIPNNDElVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSARGKNGGIRLAMHPKNINVGNIVRQ 83
                9******************8777666*******************************************************96 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.8e-06     0.011       7      52 ..      10      53 ..       6      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.8e-06
      HTH_36  7 aklllgslasfanknggcfpsqetlakrlglsknTvsraikeLeql 52
                a ++l++la     n+      +++ak +g+skn   + i  L +l
  EGE27853.1 10 ALRVLIYLATIP--NNDELVRIDDIAKSYGISKNHLTKVIHQLSKL 53
                778999******..666679**************999999999876 PP

>> ANT  Phage antirepressor protein KilAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.7e-05      0.06      13      46 ..      16      49 ..      11      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.7e-05
         ANT 13 yaDrvlesdgsititeiAkllgigenrlfelLre 46
                y+ ++ ++d ++ i +iAk +gi++n l +  ++
  EGE27853.1 16 YLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQ 49
                6667789*******************99998776 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.2e-05     0.069      29      65 ..      28      64 ..       9      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-05
                 BHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEEET CS
  TFIIE_alpha 29 teedlakelkidlnelrklLnrLyearlvkykrrrde 65
                   +d+ak  +i +n l k++ +L + ++v+  r ++ 
   EGE27853.1 28 RIDDIAKSYGISKNHLTKVIHQLSKLKVVDSARGKNG 64
                 559***************************9998875 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.4e-05     0.071      49      93 ..       8      52 ..       2      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.4e-05
                HHHHHHHHHHHH.SXSTTTEEHHHHHHHSTSXHHHHHHHHHHHHH CS
       RPA_C 49 alaqqvlnlikqspeseeGvhvdeiaqklrlsvndvkqavdeLsn 93
                + a +vl ++ + p+++e v +d ia++ ++s+n +++++ +Ls+
  EGE27853.1  8 DFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSK 52
                5667899999999******************************86 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.6e-05     0.075      24      58 ..      29      67 ..      11      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.6e-05
                HHHHHHHTTSSHHHHHHHHHHHHHTTSEE..ET.EE.EE CS
   HTH_Crp_2 24 qeelAsmlGltretvsrilseLkreglis..rg.rr.ir 58
                 +++A   G++  ++++++++L++ ++++  rg ++ ir
  EGE27853.1 29 IDDIAKSYGISKNHLTKVIHQLSKLKVVDsaRGkNGgIR 67
                589**************************8655233466 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.25      10      63 ..      11      66 ..       2      75 .. 0.80
   2 ?   -1.8   0.0       1.5   2.5e+03      41      57 ..     110     126 ..     105     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
  HrcA_DNA-bdg 10 lqaLielyr..kkkravKgeeiAevlkrneGtvRNqlqsLkalgLvegvpGPkGGY 63
                  l+ Li l +  ++++ v+  +iA+  +  +  +  +++ L  l++v++  G +GG 
    EGE27853.1 11 LRVLIYLATipNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSARGKNGGI 66
                  4555554432256789**************************************95 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
  HrcA_DNA-bdg  41 RNqlqsLkalgLvegvp 57 
                    N l  +k+l+L  g+p
    EGE27853.1 110 TNDLRKIKTLDLSVGQP 126
                   58888899999987776 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.19      14      60 ..      16      62 ..      10      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                HTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTC CS
        GntR 14 lsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgr 60
                   ++  +d L +  ++a+ +g+s++ + +++ +L+  ++v + +g+
  EGE27853.1 16 YLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSARGK 62
                5555666666668899*************************998885 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00016      0.26       9      43 ..      17      52 ..      13      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
                HHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHH CS
        MarR  9 Lrilyeqgp.lsvseLakklgvskstvtrvldrLek 43
                L+++ ++++  ++ ++ak  g+sk ++t+v+++L k
  EGE27853.1 17 LATIPNNDElVRIDDIAKSYGISKNHLTKVIHQLSK 52
                66677777767899*******************976 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0004      0.65      10      28 ..      28      46 ..      24      50 .. 0.90
   2 ?   -3.0   0.0       5.6   9.1e+03       8      16 ..     155     163 ..     154     165 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0004
                -HHHHHHHTTSSHHHHHHH CS
    HTH_AraC 10 tiediAdelgfSrsyFsrl 28
                +i+diA  +g+S ++++++
  EGE27853.1 28 RIDDIAKSYGISKNHLTKV 46
                699**************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.6
                 T--HHHHHH CS
    HTH_AraC   8 nltiediAd 16 
                 + t++di +
  EGE27853.1 155 SYTLADIIS 163
                 679999976 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00023      0.37      24      45 ..      27      48 ..      24      53 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
      HTH_10 24 vtlkeLAkelGIskstlsehLr 45
                v+++++Ak  GIsk+ l++ + 
  EGE27853.1 27 VRIDDIAKSYGISKNHLTKVIH 48
                6799***********9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1376.62
//
Query:       EGE27854.1  [L=40]
Description: hypothetical protein EA1_00685 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      136  (0.00758548); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 335.58
//
Query:       EGE27855.1  [L=502]
Description: nitrite reductase AniA/Msp78 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-14   53.9   0.1    3.4e-12   46.4   0.0    2.5  2  Cu-oxidase_3     Multicopper oxidase
    5.3e-11   42.7   0.1      2e-10   40.8   0.1    2.0  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    8.1e-11   42.9   0.5    2.1e-10   41.6   0.0    1.9  2  Cytochrom_C      Cytochrome c
    1.1e-09   38.2   0.8    0.00092   19.0   0.4    3.3  2  Cu-oxidase_2     Multicopper oxidase
    2.1e-05   24.9   0.2    0.00012   22.5   0.1    2.4  2  Copper-bind      Copper binding proteins, plastocyanin/azurin
    0.00061   19.9   0.0     0.0036   17.4   0.0    2.3  2  Cupredoxin_1     Cupredoxin-like domain
  ------ inclusion threshold ------
      0.028   14.1   0.0      0.074   12.8   0.0    1.7  1  Cytochrom_C550   Cytochrome c-550 domain


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   1.3e-15   3.4e-12       7     118 ..      95     203 ..      89     204 .. 0.86
   2 !    5.0   0.0    0.0095        24      27     118 ..     259     354 ..     235     355 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 1.3e-15
                   EECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S..SS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--T CS
  Cu-oxidase_3   7 vsplggterevitvNgqfpgptievregdtvvvnvtNkl..dentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshls 101
                   +++++g+e +++t+ gq+pg  i+vregdt++v+++N+   + +  + +h    ++     G++       +pg++ t++f++ q  g + Yh  ++
    EGE27855.1  95 MRLADGVEYQFWTFGGQVPGQMIRVREGDTIEVQFSNHPdsKMPHNVDFHAATGPGG----GAE---ASFTAPGHTSTFSFKALQ-PGLYVYHCAVA 183
                   566777889*****************************9555567899999888888....544...58899*************.*******9988 PP

                   T...HHHTT-EEEEEEE-HH CS
  Cu-oxidase_3 102 l...qqaaGlaGaiiiedke 118
                       + a+G++G+i++e+ke
    EGE27855.1 184 PvgmHIANGMYGLILVEPKE 203
                   7776888**********986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0095
                   -EEEEETT-EEEEEEEE-S.SS-B-EEEET--S-GG........GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--TTHHH.TT-EEEEEEE-HH CS
  Cu-oxidase_3  27 ptievregdtvvvnvtNkl.dentsihwhGlqqrktswmDG...vpgvtqcpiqpgesftyrftvkqqagtlwYhshlslqqa.aGlaGaiiiedke 118
                    +++++ g+tv++ v N   + + s h+ G   +k  +  G      +++  i++g     +f+v+   g +   +h+ ++   +G  G++ +e +e
    EGE27855.1 259 NALKAKVGETVRLFVGNGGpNLTSSFHVIGEIFDKVHFEGGkgeNHNIQTTLIPAGGAAITEFKVDV-PGDYVLVDHAIFRAFnKGALGILKVEGEE 354
                   4689999999999999999667788999998877776666633334577889999************.9***********9989******9999775 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.1   7.9e-14     2e-10       2      66 ..     394     476 ..     393     476 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 7.9e-14
  Cytochrome_CBB3   2 aaaaGaalykknCasCHgkggag.....pslagr.dwep..dalvdiiknG.........kg...aMpafggqlsdeelwalvaY 66 
                      +++aG+a+y++nCa+CH ++g+g     p+la++ ++++  ++  +i+ nG         ++    Mpa++  lsd++++++++Y
       EGE27855.1 394 QIKAGKATYDSNCAACHQPDGKGvpnafPPLANSdYLNAdhARAASIVANGlsgkitvngNQyesVMPAIA--LSDQQIANVITY 476
                      689***************999999999999996655554336666666666555544433424448****7..8*********99 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       5.7   1.5e+04      24      48 ..      31      55 ..      24      65 .. 0.58
   2 !   41.6   0.0   8.1e-14   2.1e-10       2      88 ..     396     477 ..     395     480 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.7
                 S....--HHHHHHHTTT-HHHHHHH CS
  Cytochrom_C 24 kqgggptlsgaaerasaasigasva 48
                 +q ++ t + aa++a+a++  ++ +
   EGE27855.1 31 AQPKSSTVDAAAKTANADNAASQEH 55
                 3333555556666666665555555 PP

  == domain 2  score: 41.6 bits;  conditional E-value: 8.1e-14
                  --HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHH CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYL 88 
                  ++Gk+ ++ nCaaCH+++g+g++++  p+l++    +      as+ ++  + + +++ ++++  + mpa    l++q+ia+++ Y 
   EGE27855.1 396 KAGKATYDSNCAACHQPDGKGVPNA-FPPLANSDYLNADHARAASIVANGLSGKITVNGNQYE--SVMPAI--ALSDQQIANVITYT 477
                  78********************988.*****99988888887777777766666666555555..566665..8***********95 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.4   3.6e-07   0.00092      33     136 ..     115     202 ..      90     203 .. 0.74
   2 !   13.5   0.0   1.8e-05     0.046      24     115 ..     249     331 ..     228     336 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.6e-07
                   EEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S-EEEEEEESSH...HHHHTT CS
  Cu-oxidase_2  33 nvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkadnpGvwllHCHil...wHldqG 126
                   ++i++++g+++e+ + n+ + + P   H +df    +gpg               +    ++  pg + +  fka +pG +++HC ++    H  +G
    EGE27855.1 115 QMIRVREGDTIEVQFSNHPDSKMP---HNVDFHAA-TGPGG--------------GAEASFTA-PGHTSTFSFKALQPGLYVYHCAVApvgMHIANG 192
                   667777777777777775555333...55555554.44444..............33455555.799999******************999****** PP

                   -EEEEEEECH CS
  Cu-oxidase_2 127 malqfvvrpd 136
                   m++ ++v+p+
    EGE27855.1 193 MYGLILVEPK 202
                   ****999986 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.8e-05
                   ETC.CTTTSSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES.S-EEEEE CS
  Cu-oxidase_2  24 nge.efsentnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkadnpGvwll 115
                   ng+    +++n+++++ ge+v++ + n ++  + +fH  G  f+ ++ ++g+      ++ n        t+ +p+gg ++ +fk+d pG ++l
    EGE27855.1 249 NGSvGALTGENALKAKVGETVRLFVGNGGPNlTSSFHVIGEIFDKVHFEGGK-----GENHNI------QTTLIPAGGAAITEFKVDVPGDYVL 331
                   66644457899****************999999*************999999.....444444......9*********************986 PP

>> Copper-bind  Copper binding proteins, plastocyanin/azurin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   4.6e-08   0.00012      18      99 .]     116     200 ..     112     200 .. 0.81
   2 ?   -2.2   0.0       2.2   5.7e+03      30      62 ..     297     309 ..     259     331 .. 0.57

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.6e-08
                  EEEEETTEEEEEEEE....SSSSBEEEEETTSSTTTGGGTTSCTTCEEEEBSTTEEEEEEEE..SSEEEEEEET..T...TTTTTSEEEEEEE CS
  Copper-bind  18 eitvkkgekvtfvnl....avmgHNvvldkdgvpagvdkdkvkaedetkliggGekdsvtfd..eagtYkffCs..P...HaaagMkgkvtve 99 
                   i+v +g++++         +m+HNv +++   p g ++   +a        +G +++  f+  ++g Y ++C+  P   H a gM+g + ve
   EGE27855.1 116 MIRVREGDTIEVQFSnhpdSKMPHNVDFHAATGPGGGAEASFTA--------PGHTSTFSFKalQPGLYVYHCAvaPvgmHIANGMYGLILVE 200
                  58899999876544344999**********99998887777766........5777777777659999*****9999************9985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.2
                  EEESSSSBEEEEETTSSTTTGGGTTSCTTCEEE CS
  Copper-bind  30 vnlavmgHNvvldkdgvpagvdkdkvkaedetk 62 
                     ++  HN+ +                    +
   EGE27855.1 297 EGGKGENHNIQT--------------------T 309
                  333334444433....................2 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.4e-06    0.0036      36      95 ..     116     183 ..     108     194 .. 0.86
   2 ?   -3.7   0.0       5.1   1.3e+04      70      92 ..     311     333 ..     302     343 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
  Cupredoxin_1  36 kievkagekvklkiknkdkt..peefesed......lgeekvlapgktttitiaplkpGeYeftcdmh 95 
                    i v +g  +++++ n+ ++  p+++ ++         e    apg t+t+ +++l+pG Y ++c   
    EGE27855.1 116 MIRVREGDTIEVQFSNHPDSkmPHNVDFHAatgpggGAEASFTAPGHTSTFSFKALQPGLYVYHCAVA 183
                   5899************8777345******999**977788999**********************865 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.1
  Cupredoxin_1  70 lapgktttitiaplkpGeYeftc 92 
                   ++ g ++  +++ + pG Y +++
    EGE27855.1 311 IPAGGAAITEFKVDVPGDYVLVD 333
                   56677777778888899987665 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.9e-05     0.074      23      66 ..     392     436 ..     375     445 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-05
                     HHHHHHHHHHHHHHTHHHHG.GGSBTTSTTSCSSHHHHHTSSS-- CS
  Cytochrom_C550  23 eeqlkkgkklFeaeCaqCHv.gGktktnpnvsLsledLalAtPpR 66 
                     +eq+k+gk  ++++Ca CH   Gk  +n    L+ +d  +A+ +R
      EGE27855.1 392 QEQIKAGKATYDSNCAACHQpDGKGVPNAFPPLANSDYLNADHAR 436
                     689****************75799999998888888887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3977.20
//
Query:       EGE27856.1  [L=32]
Description: hypothetical protein EA1_00695 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 277.63
//
Query:       EGE27857.1  [L=278]
Description: hypothetical protein EA1_00700 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-36  126.6   2.3    1.5e-36  126.3   2.3    1.1  1  FGE-sulfatase  Sulfatase-modifying factor enzyme 1


Domain annotation for each model (and alignments):
>> FGE-sulfatase  Sulfatase-modifying factor enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   2.3   8.2e-41   1.5e-36       5     260 .]      46     277 ..      42     277 .. 0.77

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 8.2e-41
                    EEEE-SEEEEES-TSTTGGCCC-S-EEEEES-EEEESS--BHHHHHHHHHH..H....HSSETTEEEEETSCTTBCCTTC-SSTT-TTSB--S--H CS
  FGE-sulfatase   5 mvlipgGsfemGseektandeeapahevtvraFaidkteVTnaqyaafvea..tgyeteaasqwwaeveganvrhpegrksdikkradhPvvhVsw 98 
                    m +i+gG+++     +   +e+ p+  vtv++F+idkt VTn+q+a+fv++  + ++++ a+ + ++   a+++++++++   +   d+Pvv+Vsw
     EGE27857.1  46 MASIKGGTYR-----PLYLSEDSPM--VTVDNFHIDKTSVTNQQFAKFVANnpKWQKQNIAKLFAEPDYLAHWQKTSKGYYPNSADIDKPVVNVSW 134
                    6667777766.....3445555554..899*********************554344447788999999*************************** PP

                    HHHHHHHHHHCHHHTS-EE---HHHHHHHHHTT-SSSSCTTBSTTSCCGB...SSTTTTB--TTCGGS-SS.---TT-S-B-TTS-B-TTCSSEEE CS
  FGE-sulfatase  99 eDavaYArwlgkktgegyrLPteaEweyAArggkkgreypwgdelkpakniwqGslakfekeaaaadsqngrtspvgsfppnalGlyDmaGNvwEW 194
                    + a+aY++ +gk      rLP+ aEwey A +   +++   g ++k       G+ +   +++++  s++   + v + p+n +G+yDm+G +wEW
     EGE27857.1 135 YAANAYCKAQGK------RLPKIAEWEYVAQA---STTRINGSQEK-------GYNQTILDWYTK--SATMPLKRVAQSPANYWGVYDMHGLIWEW 212
                    ************......************44...44445555544.......543444445444..44444578888999*************** PP

                    EEEE--THCCH-SSCS----SS-SSEEEEC--TTS.T....TGGCTSTT-E.EEE-TT--BTTEEE--EE CS
  FGE-sulfatase 195 tsdwykkyalapaeelsqeaekgelrvvkGgswlkae....lssllraafrasaetpdtaasdvGfRlvr 260
                    t+d       +  +  s+++++ ++ +  G   + a+    +  ++r  fr  + ++++a + +GfR+++
     EGE27857.1 213 TQDFN----SNLVSGESRADSTLNQTMFCGSGAAGAPdpsdYAAFMRYGFRS-SLQSQFALKSLGFRCAK 277
                    ***44....466666666666666666666555555455899*********5.557************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2266.75
//
Query:       EGE27858.1  [L=231]
Description: SCO1/SenC family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-27   96.1   0.1      3e-27   95.2   0.1    1.4  1  SCO1-SenC  SCO1/SenC
    5.5e-05   22.9   0.0      8e-05   22.4   0.0    1.2  1  Redoxin    Redoxin
    0.00032   20.6   0.0    0.00049   20.0   0.0    1.3  1  AhpC-TSA   AhpC/TSA family
     0.0008   18.9  10.5        0.5    9.7   0.1    2.7  2  SelP_N     Selenoprotein P, N terminal region
     0.0092   16.4   3.1      0.017   15.6   3.1    1.5  1  LPAM_1     Prokaryotic membrane lipoprotein lipid attachment 
  ------ inclusion threshold ------
      0.012   16.3   1.6      0.039   14.6   1.6    1.8  2  DUF2946    Protein of unknown function (DUF2946)


Domain annotation for each model (and alignments):
>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.1   9.9e-31     3e-27       8     133 ..      85     209 ..      82     210 .. 0.93

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 9.9e-31
   SCO1-SenC   8 dqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgeea.ekvqplfiTvDPerDtpevlkeyleafdpriig..ltGskeeiakaakef 103
                 dqdg+a++ ++l+g+ ++v f+Ft+C++vCp ++  m++++d+l ee  ++  +l+++ DPerDtp+vlk++ e+++++ +   l Gs ++++++a++ 
  EGE27858.1  85 DQDGNAFDLNSLAGQKQVVAFIFTNCKEVCPFMMRSMKNIQDKLPEEVrANTGFLVVSFDPERDTPAVLKNFGEHYKADEHWtfLNGSDDDVRTLANTM 183
                 8**********************************************7689************************998776667*************** PP

   SCO1-SenC 104 rvyvekvedeesdytvdHsssvyLvdpdgr 133
                 ++ ++++e      +++Hs +++++d+ g+
  EGE27858.1 184 NIRYQHAEGG----MINHSNAIMVLDEHGK 209
                 ***9987643....68**********9997 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.7e-08     8e-05      12     141 ..      84     224 ..      64     229 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.7e-08
                 CEETTCEEEEEHHHHTTSEEEEEEESTTT...-HHHHHTHH.HHHTH.HHHHHCSTTTEEEEEESSSHH.HHHHHHH.....TT-TSEEEE-.TTSHHH CS
     Redoxin  12 plaatdgnsvslsefkgkkvvvnfvpgaf...cPtCsaehp.ylekl.aellkekgvdvvavvadndaf.vkefwgk.....eglkfpvlsD.gsaaft 98 
                 ++  +dgn+++l +++g+k vv f  ++    cP  ++++    +kl +e  ++ g+ vv      d++ v +  g+     e+ +f+  sD     ++
  EGE27858.1  84 KD--QDGNAFDLNSLAGQKQVVAFIFTNCkevCPFMMRSMKnIQDKLpEEVRANTGFLVVSFDPERDTPaVLKNFGEhykadEHWTFLNGSDdDVRTLA 180
                 34..9*****************99999761114555555555555564444455555555555555666855555556998999999999997789999 PP

                 HHTT-TTEEE.GGG.EEE-EEEEEEETTEEEEEEESSSCHTSTT CS
     Redoxin  99 kalGlrleedaseg.lrtpryavidedgkvvylevepepetees 141
                   +++r++ + + +   + +  v+de+gk ++  ++ ++ +e++
  EGE27858.1 181 NTMNIRYQHAEGGMiNHSNAIMVLDEHGKMIEQANGTSTAGEDA 224
                 999988776665558899*****************999876444 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.7e-07   0.00049      11      99 ..      84     184 ..      67     213 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.7e-07
                 ESTTCEEEECHHHTTSEEEEEE...ESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH....HHHHHHHH-H.....SSEEEE-.TTSHHHHH CS
    AhpC-TSA  11 knadgetvslsdykgkpvvlff...ypkdwcpvCttelpalaklyeefkergvevigvsvdspe....shkkfiekes....lnfpllsD.eegkvaka 97 
                 k++dg+ ++l+ ++g++ v+ f    +k+ cp+  + +++++++++e   ++   + vs d++      +k+f e+++    ++f   sD   +++a+ 
  EGE27858.1  84 KDQDGNAFDLNSLAGQKQVVAFiftNCKEVCPFMMRSMKNIQDKLPEEVRANTGFLVVSFDPERdtpaVLKNFGEHYKadehWTFLNGSDdDVRTLANT 182
                 599**********99555555522234467888889999999999999999999****99887766668999999988887766666666233444444 PP

                 TT CS
    AhpC-TSA  98 yg 99 
                  +
  EGE27858.1 183 MN 184
                 44 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   7.2   0.00022      0.66     163     206 ..      16      59 ..       8      75 .. 0.60
   2 !    9.7   0.1   0.00017       0.5      20      69 ..      93     143 ..      80     179 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00022
      SelP_N 163 eckevtkaaeekpaeaeektehehahsh.kqghkhhekhghhHke 206
                  c+++ ++a++ ++++ e+++ ehah+h  +g  h ++ + hH++
  EGE27858.1  16 ACQQTEQKADQ-TTHDGEVVSTEHAHEHaAHGDAHGHDGHGHHEH 59 
                 68887655555.555557777777777744444444433333333 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00017
      SelP_N  20 mlnslGsvtvvAlLqass.lllllkasrledLRvkLekeGlanisyvvvnh 69 
                 ++  +G+  vvA++ +++  ++ + +++++++ +kL +e  an  ++vv  
  EGE27858.1  93 LNSLAGQKQVVAFIFTNCkEVCPFMMRSMKNIQDKLPEEVRANTGFLVVSF 143
                 55678*********999857899*************************975 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.1   5.7e-06     0.017       1      18 []       1      18 [.       1      18 [. 0.99

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.7e-06
      LPAM_1  1 MKKillalgalllLsGCs 18
                MKK++la +++llLs+C+
  EGE27858.1  1 MKKLILASSIALLLSACQ 18
                *****************8 PP

>> DUF2946  Protein of unknown function (DUF2946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.6   1.3e-05     0.039      13      85 ..      10      80 ..       4     105 .. 0.77
   2 ?   -1.7   0.0       1.5   4.6e+03      72     105 ..     114     147 ..     108     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
     DUF2946 13 laPavsq..aaaaaaaasllagaicsadgsaysaaytaagagspasamdseaCgyCsllaagphlmpslsaslle 85
                +a ++s+  +  + a++++ +g++ s+++++++aa+++a+++++++++ + + ++    a +p+ ++  s +l+e
  EGE27858.1 10 IALLLSAcqQTEQKADQTTHDGEVVSTEHAHEHAAHGDAHGHDGHGHHEHVELPV----ADTPAPALEESVYLVE 80
                4455555546788888999999999999998999999999999999999999988....6677777777776665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
     DUF2946  72 gphlmpslsaslleaaesasaaaaargaapalpa 105
                  p +m s++  +  + e  +a+ +++++++ +++
  EGE27858.1 114 CPFMMRSMKNIQDKLPEEVRANTGFLVVSFDPER 147
                 4679999999999999999999999888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1835.70
//
Query:       EGE27859.1  [L=343]
Description: phenylalanyl-tRNA synthetase subunit alpha [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.4e-104  347.0   0.0   6.9e-104  346.6   0.0    1.1  1  tRNA-synt_2d     tRNA synthetases class II core domain (F)
    1.3e-16   60.2   2.0    2.2e-16   59.5   2.0    1.3  1  Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-termin
    0.00019   20.9   0.0    0.00085   18.8   0.0    2.1  1  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.6   0.0  1.2e-107  6.9e-104       2     245 .]     108     342 ..     107     342 .. 0.99

  Alignments for each domain:
  == domain 1  score: 346.6 bits;  conditional E-value: 1.2e-107
                   .-TSSCTSCTSHSB-SHHHHHHHHHHHHHHCTTCEESSTTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHHTTS CS
  tRNA-synt_2d   2 idvtlpgkrieagklhpltkvleeikeiflelgfeevegpevesefynfdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtlekk 98 
                   id+ lp++ i +g+lhp+t++ e++k++f++ gf++++gpe+es++ynf+aLn++++hpaR+m+dtFy+       + ++lLRtht++vqirt+e++
    EGE27859.1 108 IDIGLPARGILSGGLHPITQTTERMKQFFVQAGFSVATGPEIESDYYNFEALNISSHHPARAMHDTFYF-------DAHYLLRTHTSSVQIRTMENS 197
                   89*******************************************************************.......679****************** PP

                   -SSEEEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTSTEEEEEEECEETTEEEEEEEEEEECCSSSSEEEEEEEEEE CS
  tRNA-synt_2d  99 kppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkklfgaevkvrfrpsyfpftePsaevdvylvekkkkwlEllgaGmv 195
                   +ppi+ii++grv+R+d+ D+th+++Fhq+egl++ +  ++a+lkg+++e+l ++fg++++ rfrps+fpftePsaevd+    +++kwlE+lg+Gmv
    EGE27859.1 198 EPPIRIICPGRVYRCDS-DQTHSPMFHQMEGLMISKSSNFAELKGLIHEFLDAFFGKKMTARFRPSFFPFTEPSAEVDILS--DNGKWLEVLGCGMV 291
                   *****************.*************************************************************88..************** PP

                   -HHHHHHTT-..TTSEEEEEEEEHHHHHHHHHT-SSGHHHHTT.HHHHGGG CS
  tRNA-synt_2d 196 rpevleavgid.eevsgfafGlGveRlamlkygieDiRelvendlrflrqf 245
                   +p+vl+++gi+ +e++gfafG+G+eR+aml ygi+D+R +++ndlrfl+qf
    EGE27859.1 292 HPQVLKNCGINpDEYTGFAFGMGIERFAMLYYGIDDLRLFFQNDLRFLKQF 342
                   *************************************************97 PP

>> Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   2.0   3.7e-20   2.2e-16       2      69 .]      36     103 ..      35     103 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 3.7e-20
                      CCCCCCCCHHHHHCCCCCCCCCCCTTTTCCCCTTTHHHHCCHHHHCCCCCCCCCHHHCCHCCHHHHHC CS
  Phe_tRNA-synt_N   2 dleeLeelRvkyLGkkGeltellkelgklppeeRkeaGkliNelKqeieealeerkeeleaaeleakl 69 
                      d++ L+elRv+  Gkk+ lt+l k++g+l+++ +k++G  + el++ i++ale++ ++l++a+++akl
       EGE27859.1  36 DERTLQELRVSLSGKKSALTALSKQMGALDADTKKQYGVYLHELRTHINQALETKAKQLATAAMNAKL 103
                      7889**************************************************************97 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.4e-07   0.00085     119     205 ..     223     303 ..     108     309 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.4e-07
  tRNA_synthFbeta 119 rhlaivltgkreeeswsekaravdfydlkgivealleslgi..ekvefepaehpalhpgrsAeikvdgk...evGvlGelhpevleafdlkq 205
                      +++ +++  k+            +f++lkg++ ++l+++     + +f+p+  p+ +p    +i  d+    ev   G +hp+vl++ +++ 
       EGE27859.1 223 HQMEGLMISKS-----------SNFAELKGLIHEFLDAFFGkkMTARFRPSFFPFTEPSAEVDILSDNGkwlEVLGCGMVHPQVLKNCGINP 303
                      44555555555...........89**************9873455899***********999999966558977779************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2766.02
//
Query:       EGE27860.1  [L=798]
Description: phenylalanyl-tRNA synthetase subunit beta [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-63  213.4   0.0    3.1e-63  212.6   0.0    1.4  1  B3_4             B3/4 domain
    2.9e-49  167.4   0.0      8e-49  166.0   0.0    1.7  2  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
    4.8e-31  107.1   0.2    9.6e-31  106.1   0.2    1.5  1  FDX-ACB          Ferredoxin-fold anticodon binding domain
    1.4e-25   89.2   2.1    1.5e-25   89.1   0.4    2.0  2  tRNA_bind        Putative tRNA binding domain
    2.6e-18   66.1   0.3    8.7e-18   64.4   0.1    2.1  2  B5               tRNA synthetase B5 domain
      0.008   16.4   0.0        1.8    8.9   0.0    3.3  3  PhetRS_B1        Phe-tRNA synthetase beta subunit B1 domain


Domain annotation for each model (and alignments):
>> B3_4  B3/4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   0.0     1e-66   3.1e-63       1     174 []     216     389 ..     216     389 .. 0.99

  Alignments for each domain:
  == domain 1  score: 212.6 bits;  conditional E-value: 1e-66
                 TSSEEEEEEEES--.-----HHHHHHHHHTT-----HHHHHHHHHHHHHT--EEEEEGGGTBTEEEEEE--TTEEEEBTTS-EEEE-TTSEEEETEEEE CS
        B3_4   1 acpryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgqPlhafDldkiqgdivvrlakegeklvtldgkereldeedlviadsekp 99 
                 acpry+a+ ++++++t p+p+w+ + L+++g+r+ n +VD+tN+v+lelgqPlhafD+dkiqgdi+vr+a++ge+l +l+++ ++l++++lviad+ ++
  EGE27860.1 216 ACPRYLAQRIDDIDRTWPTPQWMTDALIASGVRSHNFLVDVTNFVLLELGQPLHAFDADKIQGDIIVRMAHSGETLELLNEQIITLSGDELVIADDAGV 314
                 6************************************************************************************************** PP

                 EEETTTEEBTTTB--TT--EEEEEEEE--HHHHHHHHHHTT---HHHHHHHH---TTTHHHHHHHHHHHHHHHH- CS
        B3_4 100 vslagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldravallselcg 174
                 ++lag+mgg++s+vs++T++++le+a+fd  +i ++arr+gl+++as+rfergvd ++ + a+drav l++ ++g
  EGE27860.1 315 LALAGIMGGARSAVSDETTSIILESAHFDRLTISGRARRFGLHTDASQRFERGVDFALPKLAIDRAVGLIVSVAG 389
                 **********************************************************************98775 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.0   0.0   2.7e-52     8e-49       2     214 .]     479     687 ..     478     687 .. 0.96
   2 ?   -2.9   0.0       1.3   3.8e+03     112     155 ..     750     786 ..     744     790 .. 0.69

  Alignments for each domain:
  == domain 1  score: 166.0 bits;  conditional E-value: 2.7e-52
  tRNA_synthFbeta   2 pstlPkapttegelnkeqklrrklrdllagaGlnEvitysfvsekeldklleddderkavelanPlsedqsvlRtsLlpglLevlarNlargne 95 
                        tlP+ ++ ++  ++  +l + +++ la++G+ E++++sf ++k+ + + +d++  +++ lanP+s+d++v+R++L+++lL  +++Nl+r+++
       EGE27860.1 479 CATLPELSVDMR-YDDTADLVQLVKRSLASSGYYEAVSFSFSDAKIEALF-DDQSLGTVLPLANPISSDLAVMRRTLMSSLLPIVSYNLNRQQP 570
                      579*********.99*******************************9999.788**************************************** PP

  tRNA_synthFbeta  96 dvrlFEigkvflkdseeelpeeerhlaivltgkreeeswsekaravdfydlkgivealleslgi.ekvefepaehpalhpgrsAeikvdgkevG 188
                      +vrlFE+g  f    + e + ++  la+++tg+  +++ s+ +r++dfydlk  +e+ll +    +kv++e+++  +lhpg+sA +++dg+ +G
       EGE27860.1 571 RVRLFETGLSFVGG-DVEHVVQTPSLAMIATGEL-TTEQSHGTRKMDFYDLKRDIESLLPNTLDkSKVTYERTTLTFLHPGQSAHLMIDGEDLG 662
                      **************.7789***************.88889999****************8765559**************************** PP

  tRNA_synthFbeta 189 vlGelhpevleafdlkqrvyvfEldl 214
                      ++G+lhp++++a+dl++ v+v+++dl
       EGE27860.1 663 FFGQLHPSICKALDLPT-VWVAQMDL 687
                      *****************.9****997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
  tRNA_synthFbeta 112 eelpeeerhlaivltgkreeeswsekaravdfydlkgivealle 155
                      e+lp+ ++ la++++ +++       + + + +++k++v+++ +
       EGE27860.1 750 ETLPKGKKSLAFAMVFQDQ-------NATLEDEQIKAAVDKVIQ 786
                      6889999999999999994.......444444556666666655 PP

>> FDX-ACB  Ferredoxin-fold anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.2   3.2e-34   9.6e-31       1      94 []     704     797 ..     704     797 .. 0.99

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 3.2e-34
                 -SS--EEEEEEEEEESSS-HHHHHHHHHHHH-TTEEEEEEEEEEESTTS-SSEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHTT.T-BES CS
     FDX-ACB   1 SkfPaverDlalvvdekveaaelleavreaagellesvqlfDvYrgkklaegkkSlalrltlqskertLtdeevnaaiekvvealekklgaelR 94 
                 SkfP+v+rDla++vd++v++++l++ +r+aag++l++v lfD+Y g+ l++gkkSla+++++q++++tL+de+++aa++kv+++l++k++a lR
  EGE27860.1 704 SKFPSVRRDLAVLVDQDVAWQALEKDIRKAAGKYLQDVWLFDIYVGETLPKGKKSLAFAMVFQDQNATLEDEQIKAAVDKVIQNLADKHAAHLR 797
                 9*******************************************************************************************99 PP

>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.4   4.9e-29   1.5e-25       1      95 [.      45     149 ..      45     150 .. 0.97
   2 ?   -2.4   0.1       1.8   5.4e+03      34      65 ..     392     423 ..     379     431 .. 0.68

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 4.9e-29
                 EEEEEEEEEEEETTSSTEEEEEEEESSSSEEEEEESCTTTST.HHHHTTEEEEEETTSESE.......EETTEEESSEE-EEEC..CESSCEEEEEESS CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeeeprqivsgaknvye.peelvakkvvvvanlkpk.......klrGveSeGMilsaee..ldekevgilelpa 89 
                 +++G v e+++hp+ad+L+v+kvd+G++e +qiv+ga+nv    +++va++++v+++ + k       klrGveS+GM+++a+e  l+++ +g++elp+
  EGE27860.1  45 VVIGVVTECQQHPDADRLRVTKVDIGSGEHLQIVCGAPNVCVgLKVAVATIGAVLPSDDNKgfkikkgKLRGVESQGMLCGASElgLEDEIDGLMELPK 143
                 79******************************************************9888889999*******************99************ PP

                 T--TTC CS
   tRNA_bind  90 dveaGe 95 
                 d+++G 
  EGE27860.1 144 DAPIGM 149
                 ***996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                 EESCTTTSTHHHHTTEEEEEETTSESEEETTE CS
   tRNA_bind  34 vsgaknvyepeelvakkvvvvanlkpkklrGv 65 
                 vs++++  + ++l  ++ ++v+  k+ +l Gv
  EGE27860.1 392 VSQMTTAENLDALPVRHKIIVPVGKVSQLLGV 423
                 55555555566677778888888888777776 PP

>> B5  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.1   2.9e-21   8.7e-18       3      67 .]     412     475 ..     410     475 .. 0.97
   2 ?   -2.9   0.0         3   8.9e+03      43      52 ..     705     714 ..     704     718 .. 0.81

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 2.9e-21
                 EEHHHHHHHHTS---HHHHHHHHHHTT-E.EESSTTCEEEE--TT-TT--SHHHHHHHHHHHH-G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
          B5   3 lrvekinkllGidlseeeiikiLkrlgceriekdkdlllVtvPswRsDlereeDliEEvaRlyGY 67 
                 + v+k+++llG+d+++++++++L+rl++  +++++d l ++vPs+R Dl+ + D++EE+aR+yGY
  EGE27860.1 412 VPVGKVSQLLGVDIPSDQMVDMLNRLEIV-TTMQQDSLVCQVPSHRFDLTIYQDIVEEIARMYGY 475
                 6899************************7.5*********************************9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3
                 E--TT-TT-- CS
                 xxxxxxxxxx RF
          B5  43 tvPswRsDle 52 
                 + Ps R+Dl 
  EGE27860.1 705 KFPSVRRDLA 714
                 67******96 PP

>> PhetRS_B1  Phe-tRNA synthetase beta subunit B1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.039   1.2e+02       6      42 ..       3      39 ..       1      90 [. 0.76
   2 !    8.9   0.0   0.00059       1.8      50      78 ..     156     184 ..     126     188 .. 0.80
   3 ?   -0.7   0.0      0.56   1.7e+03      49      77 ..     441     469 ..     417     473 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.039
   PhetRS_B1  6 vkkeaLfkalgkelteeeledllfefGlElDeiveee 42
                ++++ L + ++ +++ e l + l   GlElD +++ +
  EGE27860.1  3 ISENWLRQWTNPSINSELLGEQLTMAGLELDGVETVA 39
                778889999999999999*99999*******998755 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00059
   PhetRS_B1  50 kseeviykidipAnryDLLcleglaralk 78 
                 + + +i+ i i  nr D L++ glar ++
  EGE27860.1 156 NLDAKIFEIAITPNRGDCLSVLGLAREIA 184
                 457899*******************9986 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.56
   PhetRS_B1  49 kkseeviykidipAnryDLLcleglaral 77 
                 ++ ++  +  ++p+ r DL   + +++ +
  EGE27860.1 441 TTMQQDSLVCQVPSHRFDLTIYQDIVEEI 469
                 45566667788999999998888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5557.00
//
Query:       EGE27861.1  [L=98]
Description: integration host factor subunit alpha [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-29  100.8   0.0    4.3e-29  100.6   0.0    1.0  1  Bac_DNA_binding  Bacterial DNA-binding protein
    4.5e-07   30.0   0.0    4.8e-07   29.9   0.0    1.0  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
    0.00029   20.7   0.1    0.00041   20.2   0.1    1.2  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
     0.0024   18.0   0.0     0.0037   17.4   0.0    1.3  1  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
  ------ inclusion threshold ------
      0.048   13.8   0.0      0.052   13.7   0.0    1.1  1  HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
       0.19   11.9   0.0       0.22   11.7   0.0    1.1  1  Iron_transport   Fe2+ transport protein


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   1.4e-32   4.3e-29       1      86 [.       4      89 ..       4      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 1.4e-32
                     EEHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHH CS
  Bac_DNA_binding  1 mtkkeLieeiaektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelk 86
                     +tk+++++e+  +  lt+++a+++v+ f+++i+++L++g++v+lsgFG+f++k++k+r grnpkTge v i+ar+vv+Fk++++l+
       EGE27861.1  4 LTKADMVDELTIRLRLTRQQARKLVDGFFEEISQSLAQGHEVKLSGFGNFELKDKKPRPGRNPKTGESVPIQARRVVTFKAGQKLR 89
                     69**********************************************************************************97 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.6e-10   4.8e-07      32     120 ..       4      94 ..       1      97 [. 0.89

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.6e-10
      HU-HIG  32 vdfeeLceeiskrstlsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkkin.frpgkklkkelkk 120
                 ++  ++++e + r  l+r + +  +d++ +e++++La+G+ V+L ++G+F l+ k  ++  ++k+ ++  i+ ++++ f++g+kl+  +++
  EGE27861.1   4 LTKADMVDELTIRLRLTRQQARKLVDGFFEEISQSLAQGHEVKLSGFGNFELKDKKpRPGRNPKTGESVPIQARRVVtFKAGQKLRGWIDS 94 
                 6677889999999999****************************************999999*********9998644*******987765 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.4e-07   0.00041      13      51 ..      19      57 ..      10      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.4e-07
  HU-CCDC81_bac_2 13 isyeeAlqkiekeveelkqeLeeegrveleniGeLslne 51
                     ++ ++A++ ++ + ee+ q L ++++v+l++ G++ l++
       EGE27861.1 19 LTRQQARKLVDGFFEEISQSLAQGHEVKLSGFGNFELKD 57
                     6789*******************************9875 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06    0.0037      10      58 ..      13      59 ..      10      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
  HU-CCDC81_euk_2 10 laaaaglsrdvVescvqetfqalgdllrngknvelefkgiGvLsirnrk 58
                     l +++ l+r++++  v+ +f ++++ l++g+ v+l   g+G++ ++++k
       EGE27861.1 13 LTIRLRLTRQQARKLVDGFFEEISQSLAQGHEVKLS--GFGNFELKDKK 59
                     5667889************************99986..79*99999987 PP

>> HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05     0.052      18      64 ..      18      64 ..       4      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
  HU-CCDC81_euk_1 18 lltteqllliWdalgeyieeqlekgkgvhipnfGtFtfeapdldlka 64
                      lt++q ++  d + e i++ l +g  v++ +fG F ++ ++  ++ 
       EGE27861.1 18 RLTRQQARKLVDGFFEEISQSLAQGHEVKLSGFGNFELKDKKPRPGR 64
                     68899999999**************************9966544444 PP

>> Iron_transport  Fe2+ transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.5e-05      0.22      60     114 ..       6      58 ..       2      77 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.5e-05
                     TTSB--S-EEEEEEEETT----EEEE-EEEEETTEEEEEEEE--T-SEEEEEEEE CS
  Iron_transport  60 eGewvpyLtvkykltkkksgeaksgtlmpmvasDgphYganvklkgvgkYkltle 114
                     + + v +Lt++ +lt+++  + ++g +  + +s     g+ vkl+g g+++l+ +
      EGE27861.1   6 KADMVDELTIRLRLTRQQARKLVDGFFEEISQS--LAQGHEVKLSGFGNFELKDK 58 
                     5678999********************998765..778*************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 727.50
//
Query:       EGE27862.1  [L=86]
Description: 50S ribosomal protein L31 type B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-26   91.7   0.2      3e-26   91.4   0.2    1.1  1  Ribosomal_L31  Ribosomal protein L31


Domain annotation for each model (and alignments):
>> Ribosomal_L31  Ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.2   1.7e-30     3e-26       1      67 []       1      78 [.       1      78 [. 0.99

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 1.7e-30
  Ribosomal_L31  1 mKkgiHPeyrevvvkca.cgeefltrStl..........kekpeikvdvcsksHPfYtGkqklvdtaGrvekFkkryg 67
                   m+k+iHPeyrev ++++ ++  fltrSt+          +e+p + +d++s+sHPfYtG+q+ + ++Grv+ F+kr+g
     EGE27862.1  1 MRKDIHPEYREVLFHDTnADVYFLTRSTVstkttreyegQEYPYFPLDISSASHPFYTGEQRKTANEGRVASFNKRFG 78
                   9****************99**********************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.82
# Mc/sec: 318.42
//
Query:       EGE27863.1  [L=322]
Description: putative cell division protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-29  102.5   0.0    2.5e-29  101.7   0.0    1.4  1  ZipA_C    ZipA, C-terminal FtsZ-binding domain


Domain annotation for each model (and alignments):
>> ZipA_C  ZipA, C-terminal FtsZ-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0   1.4e-33   2.5e-29       2     126 ..     187     313 ..     186     315 .. 0.96

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 1.4e-33
      ZipA_C   2 vivlnvvakeg.eafsGtkllqaleaaglklgemgiFhrhededgkgpvlFslanmvkpG..tFdlenmeefstpGvslflqlpsvgdaleafdqmlet 97 
                 ++ + ++ +++   + G ++l++++++g+k+g m++Fhr+e+edg+g ++Fs++ +  +G   Fdl+++ e+++ G++lfl lp+ ++al+ fd m+++
  EGE27863.1 187 TVSIAIMPRNSfAGLPGCTVLEIVRTYGMKYGVMNLFHRYENEDGTGDLWFSMMGVGYEGvcAFDLNSLPESHFMGLTLFLALPH-PHALRGFDSMVSV 284
                 67899999998889**********************************************999**********************.89*********** PP

      ZipA_C  98 ArqlaeeLggellDenrsplteqtiekir 126
                 A+ +a++L +++lDe+ + ++++ ++k+r
  EGE27863.1 285 AHMIAQDLSADMLDEQGNLFDDTYFAKLR 313
                 ***********************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1410  (0.0786435); expected 358.6 (0.02)
Passed bias filter:                      891  (0.049696); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2193.34
//
Query:       EGE27864.1  [L=302]
Description: formamidopyrimidine-DNA glycosylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-25   88.8   0.0    6.4e-25   88.0   0.0    1.4  1  Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-termina
    4.7e-25   87.4   0.0    9.2e-25   86.5   0.0    1.5  1  H2TH            Formamidopyrimidine-DNA glycosylase H2TH doma
    1.3e-06   28.1   0.4    2.2e-06   27.4   0.4    1.4  1  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
  ------ inclusion threshold ------
       0.21   11.8   0.5       0.41   10.8   0.5    1.5  1  Auto_anti-p27   Sjogren's syndrome/scleroderma autoantigen 1 


Domain annotation for each model (and alignments):
>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   1.4e-28   6.4e-25       1     116 []       1     122 [.       1     122 [. 0.89

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1.4e-28
                     X--HHHHHHHHHHHHHHHTT-EEEEEEE-SSHHHTS.THHHHHTT-.SEEEEEEEEETTEEEEEE.......EEEEEEE-TTTEEESS....... CS
  Fapy_DNA_glyco   1 MPElpEVetvrrglrrhllgkkiakvevlkdktlrg.spaafakalkgrkiasvgrrGKyllleldg.....gevlvvhlgmtGrllikeaeeep 89 
                     MPElpEVet++  l++ l+g++++ v+v +++ lr+  +++++ +l g ++++++rr+Kylll++ +     +++l++hlgm+G+l+   + +ep
      EGE27864.1   1 MPELPEVETTKLSLEP-LIGQTVTCVQV-RHPRLRYdIAKDLD-SLVGFVLTKLQRRAKYLLLDFYHahdsrQKTLLIHLGMSGSLQQ--HINEP 90 
                     **************99.9**********.89999995555555.599******************65666779*************76..66777 PP

                     ..TTEEEEEEEG....GGEEEEEEETT---EE CS
  Fapy_DNA_glyco  90 p.khtkvrleld....dgtelaFvDpRrfGrv 116
                     p kh++v ++++    +   l+++DpRrfG +
      EGE27864.1  91 PrKHDHVLIDFAdshgKIITLHYHDPRRFGMI 122
                     779********989888899**********75 PP

>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.0   2.1e-28   9.2e-25       1      91 [.     144     241 ..     144     243 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 2.1e-28
                 ---BTTSTTS-HHHHHHHHHT-.......-SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHHHHHHHHTTTTGCCS CS
        H2TH   1 Lgpeplseaftvdalaerlkkk.......krkiktlLLDqklvaGlGNiyadEvLfrakihPerlakslskeelellhqeikevlkeaielgksgist 91 
                 Lgpeplse+f++++l +++ +        +++ik l++Dq++v+G+GNiya E+Lf ++ihP ++a  +++ +l +l+++ik++l +ai  g+s++++
  EGE27864.1 144 LGPEPLSEDFDANYLIRYIMRPkshqkplNKPIKSLIMDQSVVVGVGNIYAAESLFLSGIHPLTPAYLVHEDKLVRLTHHIKQILARAITQGGSTLRD 241
                 8**************9998765567778899***********************************************************99999876 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.4     5e-10   2.2e-06       1      29 [.     263     291 ..     263     291 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 5e-10
                   TSB-TTT--BBEEEECTTEEEEE-TTTT. CS
  zf-FPG_IleRS   1 GepCpRCwryiervgqagrstyfCprCqk 29 
                   Ge C +C+  +e ++++gr +++Cp+Cq+
    EGE27864.1 263 GESCATCGSLLENIKISGRASVYCPNCQP 291
                   677*************************6 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   9.2e-05      0.41      15      40 .]     263     290 ..     262     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.2e-05
  Auto_anti-p27  15 aetCpvCgvPLmrdr..kggkvyCvaCd 40 
                    +e+C +Cg+ L   +  ++  vyC++C+
     EGE27864.1 263 GESCATCGSLLENIKisGRASVYCPNCQ 290
                    799******99999999999*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2387.99
//
Query:       EGE27865.1  [L=788]
Description: (p)ppGpp synthetase I SpoT/RelA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-34  117.4   0.6    2.2e-33  115.0   0.1    2.3  2  RelA_SpoT   Region found in RelA / SpoT proteins
    6.5e-30  103.9   1.0    1.5e-29  102.8   1.0    1.6  1  HD_4        HD domain
    1.4e-17   63.5   0.3    5.9e-17   61.5   0.0    2.3  2  TGS         TGS domain
    9.3e-14   51.8   0.2    3.5e-13   49.9   0.2    2.1  1  ACT_4       ACT domain
  ------ inclusion threshold ------
      0.011   15.5   0.3      0.089   12.6   0.0    2.7  3  Ub-Mut7C    Mut7-C ubiquitin
        0.1   12.4   0.2       0.31   10.9   0.2    1.9  1  ACT         ACT domain
        1.5    9.1   4.7        5.3    7.4   0.3    3.2  3  dsDNA_bind  Double-stranded DNA-binding domain


Domain annotation for each model (and alignments):
>> RelA_SpoT  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.58   1.5e+03      56     102 ..     174     221 ..     131     224 .. 0.64
   2 !  115.0   0.1   8.5e-37   2.2e-33       1     115 [.     310     418 ..     310     420 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.58
                 SEEEEEEETST.SHCTTCCSEEEEEEEETTEEEEEEEEEEEEEHHHHH CS
   RelA_SpoT  56 vkpkrfkdyia.epkengYrslHtvvssekgeekvlvEiQiRtiamda 102
                  +++r +dy++ +++e+  + + +++s++++ + vl+ +  Rt+am +
  EGE27865.1 174 ESNQRLEDYFEsNQREQLSNIYSMLISTTNDVRAVLIKLAERTFAMRE 221
                 345588999986666666666777777778888888888888888765 PP

  == domain 2  score: 115.0 bits;  conditional E-value: 8.5e-37
                 EEE--HHHHHHHHHHCT--CCCCCCCSSTSEEEEEEESSHHHHHHHHHHHHT-SSSEEEEEEETSTSHCTTCCSEEEEEEEETTEEEEEEEEEEEEEHH CS
   RelA_SpoT   1 gRvKslysiieKlerkgikveekfeeitDligiRvivefkddvyevlelikklwdvkpkrfkdyiaepkengYrslHtvvssekgeekvlvEiQiRtia 99 
                 gRvK++ysi++K+++k+     +f++++D+ ++Rv+v++  ++y +l++++ lw+++p++f+dyi++pk+ngY+slHt+v      e+ ++E+QiRt++
  EGE27865.1 310 GRVKHIYSIWRKMKSKN-L---SFDQLYDIRALRVMVNTNAECYYTLGIVHGLWRHIPEQFDDYITNPKPNGYKSLHTAV----IAEQRTLEVQIRTFD 400
                 6****************.6...7*********************************************************....6677899******** PP

                 HHHHHH..HHHHHHHHCT CS
   RelA_SpoT 100 mdawae..iehhlrYkek 115
                 m++ ae   ++h++Yke+
  EGE27865.1 401 MHFEAElgKASHVNYKEG 418
                 ******999*******86 PP

>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   1.0   5.7e-33   1.5e-29       8     155 ..      96     250 ..      90     251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 5.7e-33
        HD_4   8 lhagqrkltgepllahalevAailaelgldaetviAalLhdvveda.lsleeirerfGeevarLvegvsklkrlqkva......aadeaeekaeqvenl 99 
                 +ha++ + t + +  +++++A ila l  ++ +++Aa+L+++ +    s++ ir +fGe++a+Lv ++  + rl++        +   +++++eq+ n+
  EGE27865.1  96 IHANKPHVTRSGAYITGIGMADILAYLFQNENALAAAMLYRTARRElVSIQTIRVNFGEDIAHLVMDALAMGRLSESIesnqrlEDYFESNQREQLSNI 194
                 444455555555666799*************************9766888*************************99877776666667788******* PP

        HD_4 100 RkmLlAmveDirvvliklAdrlqtlrslaaakeekrrdvaretldiyaplAnrlGi 155
                   mL++ ++D+r+vliklA+r+ ++r l+ a+++++++vare++ iyaplA+rl i
  EGE27865.1 195 YSMLISTTNDVRAVLIKLAERTFAMRELSFAPPDRQKRVAREVMTIYAPLAHRLSI 250
                 *****************************************************987 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   2.3e-20   5.9e-17       1      60 []     459     518 ..     459     518 .. 0.99
   2 ?   -2.6   0.1       2.4   6.1e+03      32      58 ..     594     632 ..     591     633 .. 0.82

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 2.3e-20
                 EEEEETTSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEEE CS
         TGS   1 irvytPdGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIvt 60 
                 i+v+ +dG++ +lp+gatv DfAy +h+++++++ +A+VnG+ v+l+h+ + gd +eI+t
  EGE27865.1 459 IYVFSRDGDITELPKGATVLDFAYYVHTEVGNRAQGARVNGRYVPLTHQPKTGDQIEIIT 518
                 799*******************************************************98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.4
                 HHEEEEEECS............EEEETTSBB-SSEEEEE CS
         TGS  32 kkfiyAlVnG............qrvgldhvLedgdvveI 58 
                 +++ +AlV G            q+  l++++ d +++eI
  EGE27865.1 594 DDLYVALVIGditvtqisnlvaQKLNLTTQVPDKAKIEI 632
                 566778888888888888888899999999999999998 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.2   1.4e-16   3.5e-13       6      80 .]     712     785 ..     708     785 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 1.4e-16
       ACT_4   6 tvrleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisVeR 80 
                 +v ++vea++ +glL+d++ vi  ek+ni+  +++ ++   + ++k+ veV  ++hLsr+++k+++ p+V  ++R
  EGE27865.1 712 PVVIHVEAKNTNGLLRDLVHVIDREKVNIHRAETVFND-GAISHMKFYVEVAGIAHLSRLLNKIEQQPSVLHARR 785
                 789*********************************85.99*****************************99988 PP

>> Ub-Mut7C  Mut7-C ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.89   2.3e+03       5      41 ..     149     185 ..     146     204 .. 0.62
   2 ?   12.6   0.0   3.5e-05     0.089      46      78 ..     485     521 ..     484     524 .. 0.80
   3 ?   -3.7   0.0       4.4   1.1e+04       7      25 ..     540     558 ..     538     560 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.89
    Ub-Mut7C   5 tfrfyaeLndflprarreralavafdeaatvkhviEa 41 
                  ++f + + +++  a     l+  +++ + + +  E+
  EGE27865.1 149 RVNFGEDIAHLVMDALAMGRLSESIESNQRLEDYFES 185
                 5556666666666555555555555555555555554 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.5e-05
    Ub-Mut7C  46 htEVel....ilvnGesvgfshiledGdrvavypvfe 78 
                 htEV+      +vnG++v++ h ++ Gd++++ ++++
  EGE27865.1 485 HTEVGNraqgARVNGRYVPLTHQPKTGDQIEIITRSN 521
                 777764333368*******************998765 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 4.4
    Ub-Mut7C   7 rfyaeLndflprarreral 25 
                 r + +L++ +++++r +++
  EGE27865.1 540 RAKSKLRQWFNKQDRDKNI 558
                 6778999******999876 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00012      0.31       3      65 ..     715     777 ..     713     779 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTT CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkl 65 
                 + v++++  GlL ++  ++ +  +Ni+++e+   +  + +  f v+v++ ++l+ +l+++++ 
  EGE27865.1 715 IHVEAKNTNGLLRDLVHVIDREKVNIHRAETVFNDGAISHMKFYVEVAGIAHLSRLLNKIEQQ 777
                 55899************************9876666678888888888888888888888875 PP

>> dsDNA_bind  Double-stranded DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3    0.0021       5.3      39      89 ..     127     177 ..     123     180 .. 0.89
   2 ?    1.4   0.1      0.14   3.7e+02      39      77 ..     176     214 ..     174     218 .. 0.90
   3 ?    0.2   0.1      0.36   9.1e+02      43      82 ..     274     313 ..     268     315 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0021
                 HHHHTTS--HHHHHHHHHHTTT-HHHHHHHHHHHHHHHH--SS-----HHH CS
  dsDNA_bind  39 qaiLsqiLepeAreRLsrirlvkperaeavenrLiqlaqsGqlrskvteeq 89 
                 +a+ + +L + Ar  L +i+  + +  e++ + ++    +G+l++ ++ +q
  EGE27865.1 127 NALAAAMLYRTARRELVSIQTIRVNFGEDIAHLVMDALAMGRLSESIESNQ 177
                 5555678999***********************************998765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.14
                 HHHHTTS--HHHHHHHHHHTTT-HHHHHHHHHHHHHHHH CS
  dsDNA_bind  39 qaiLsqiLepeAreRLsrirlvkperaeavenrLiqlaq 77 
                 ++ L+   e++ re Ls+i  +    +++v   Li+la+
  EGE27865.1 176 NQRLEDYFESNQREQLSNIYSMLISTTNDVRAVLIKLAE 214
                 567888999999*************************97 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.36
                 TTS--HHHHHHHHHHTTT-HHHHHHHHHHHHHHHH--SS- CS
  dsDNA_bind  43 sqiLepeAreRLsrirlvkperaeavenrLiqlaqsGqlr 82 
                 +++L+++  eR + i+lvk   +e++e   iq   sG+++
  EGE27865.1 274 ASLLAEKRSEREAYIQLVKSKLSEELERAGIQGEVSGRVK 313
                 56788888899999************99988887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.39
# Mc/sec: 5995.81
//
Query:       EGE27866.1  [L=63]
Description: hypothetical protein EA1_00745 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 560.44
//
Query:       EGE27867.1  [L=32]
Description: hypothetical protein EA1_00750 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 254.87
//
Query:       EGE27868.1  [L=581]
Description: putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-48  162.9   0.0    2.4e-47  160.9   0.0    1.9  2  DEAD            DEAD/DEAH box helicase
    8.5e-31  106.6   0.1    2.5e-30  105.1   0.1    1.9  2  Helicase_C      Helicase conserved C-terminal domain
      5e-06   26.6   0.0    1.7e-05   24.9   0.0    1.9  1  ResIII          Type III restriction enzyme, res subunit
     0.0082   16.5   0.1      0.056   13.8   0.1    2.2  2  AAA_19          AAA domain
  ------ inclusion threshold ------
      0.075   13.4   0.1       0.17   12.3   0.1    1.5  1  HCV_core        Hepatitis C virus core protein
       0.08   12.9   0.1       0.36   10.8   0.0    2.1  3  Flavi_DEAD      Flavivirus DEAD domain
       0.14   12.4   0.1       0.45   10.8   0.1    1.8  1  CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/C
       0.24   11.7   1.2        2.1    8.6   1.2    2.4  1  AAA_22          AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9   0.0   1.1e-50   2.4e-47       1     172 [.      42     208 ..      42     212 .. 0.93
   2 ?   -1.0   0.0      0.57   1.3e+03      45     104 ..     256     315 ..     243     324 .. 0.66

  Alignments for each domain:
  == domain 1  score: 160.9 bits;  conditional E-value: 1.1e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvlliiggvaardqlskldng 97 
                 t+iQa+aip++l+g+d+l++a+TGsGKT+af++pvl++++++ + +++ +ali++PtreLa q+ + ++++++ ++ +  + ++gg ++  ql++l++g
  EGE27868.1  42 TPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKMSRKpTIEKHVQALILTPTRELALQVQDSVRRYGDGMRnMFSVPLVGGAPYGGQLRALKKG 140
                 89*************************************998889999*************************96633333679*************** PP

                 CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 v+++++tpgrl+d++++g+++ls++ +l+lDEadr+ld+gf d+i++il+++       +++rq+++ SAT+   
  EGE27868.1 141 VQVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNT-------PQTRQTVMSSATWDGA 208
                 ****************************************************.......56688*******9755 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.57
                 STS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEE.EEETTSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  45 ktgpkalivePtreLaeqtlnnlkkfkkyidlrvl.liiggvaardqlskldng.vdivvgt 104
                  + ++a+i + t+  +e+ + +l + + ++  r+l   + + ++++ +s++++g +d++v+t
  EGE27868.1 256 PKIKQAVIFAATKMSTEKLAAQLVEAGFKA--RYLhGDLPQGKRNRIVSDMKSGkCDVLVAT 315
                 444577788877777777777777776653..333133445566677777776679999988 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         6   1.3e+04       6      29 ..     185     209 ..     182     232 .. 0.59
   2 !  105.1   0.1   1.1e-33   2.5e-30       2     111 .]     245     353 ..     244     353 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6
                 HHHHHHHTTTTSEEEEEESSHH.HH CS
  Helicase_C   6 llellkleeeggkilifvntid.rl 29 
                 ++e+l+++ +++++++ + t+d  +
  EGE27868.1 185 IKEILQNTPQTRQTVMSSATWDgAV 209
                 5667777777788888888888533 PP

  == domain 2  score: 105.1 bits;  conditional E-value: 1.1e-33
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 k ++ll+ l ++ + ++++if+ t+ + ek  ++l+  + g+k+ +lhg+lpq +r++i++++++g++dvL+atdva+rGidi  +++Vin+dlpr+v+
  EGE27868.1 245 KNNILLQVL-NNPKIKQAVIFAATKMSTEKlaAQLV--EAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGIDISAISHVINYDLPRQVE 340
                 678899999.89999***********9987655555..779********************************************************** PP

                 HHHHHHTTSSSTT CS
  Helicase_C  99 syiqriGRtgRag 111
                 +y++riGR+gRag
  EGE27868.1 341 DYVHRIGRCGRAG 353
                 ***********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   7.4e-09   1.7e-05      24     161 ..      55     196 ..      29     206 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.4e-09
                 TSEEEEEESTTSTHHHHH.HHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG.........GEEEESSS-B--.......-SEEEEEHHH CS
      ResIII  24 dkrglikmaTGtGKTlva.aklierllkkgkee...kflflvprkslleqtleefkkflseayke.....igkkvsgdkkkakekdstnkkilvttiqs 113
                  + +l+ + TG+GKT    + + +++++k  +e   ++l+l p+++l  q ++ ++++ +  ++      +g+   g + +a    ++  +++++t  +
  EGE27868.1  55 GRDLLLSAQTGSGKTAAFvLPVLDKMSRKPTIEkhvQALILTPTRELALQVQDSVRRYGDGMRNMfsvplVGGAPYGGQLRA---LKKGVQVIIATPGR 150
                 356899*********9998899999999998889999***********************9998888888555555555544...59999********* PP

                 HHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---SE CS
      ResIII 114 ldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfkeav 161
                 l  ++      + + + ++ d++i DEa r+ ++   + ++eil++ ++  
  EGE27868.1 151 LIDHM-----REGRVDLSKLDMLILDEADRMLDMgfaDDIKEILQNTPQTR 196
                 *****.....7889999999*************966557777777765543 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.5e-05     0.056       1      69 [.      45     116 ..      45     200 .. 0.65
   2 ?   -0.1   0.0      0.49   1.1e+03      38      74 ..     254     290 ..     242     388 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkh.ivallvelgg.vkpeeillvaftgrAakelrerlaalgaea 69 
                 q +a+  al+ + ll+ a  G+GKT   +  ++  + +  + +k  + l++++t+  a +++++++ +g   
  EGE27868.1  45 QAKAIPhALNGRDLLLSAQTGSGKTAAFVLpVLDKMSRKPTiEKHVQALILTPTRELALQVQDSVRRYGDGM 116
                 7899966******************8655414444444443145589***********99999997776654 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.49
      AAA_19  38 ggvkpeeillvaftgrAakelrerlaalgaeatTiHr 74 
                 ++ k ++ ++ a t+ ++++l+ +l ++g +a+ +H+
  EGE27868.1 254 NNPKIKQAVIFAATKMSTEKLAAQLVEAGFKARYLHG 290
                 3445689999999999999999999888888888884 PP

>> HCV_core  Hepatitis C virus core protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.4e-05      0.17      19      43 ..     119     144 ..     109     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.4e-05
    HCV_core  19 mgyiplv.gaplggaaralahgvrvl 43 
                 m  +plv gap gg  ral +gv+v+
  EGE27868.1 119 MFSVPLVgGAPYGGQLRALKKGVQVI 144
                 5569999459*************997 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016      0.36       8      54 ..      59     110 ..      53     121 .. 0.76
   2 ?   -2.6   0.0       2.1   4.7e+03      94     112 ..     163     181 ..     139     215 .. 0.64
   3 ?   -2.5   0.0       2.1   4.6e+03      60      88 ..     264     292 ..     251     325 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
                 EEE--TTS-TTTTHHHHHHHH.....HHHTT--EEEEESSHHHHHHHHHHTT CS
  Flavi_DEAD   8 vldlhPGaGktrkvlpelvke.....aierrlrtlvLaPtrvvlaemeealk 54 
                 +l +  G+Gkt  ++  ++++     +ie+++++l+L+Ptr  +  ++++++
  EGE27868.1  59 LLSAQTGSGKTAAFVLPVLDKmsrkpTIEKHVQALILTPTRELALQVQDSVR 110
                 577889*****98655544331112368999**********99999888776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.1
                 ---SEEEEETTT--SHHHH CS
  Flavi_DEAD  94 knyeliimDeahflDPasi 112
                  + +++i+Dea  +  +  
  EGE27868.1 163 SKLDMLILDEADRMLDMGF 181
                 4567788888865544444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.1
                 E-------------SEEEEEHHHHHHHHH CS
  Flavi_DEAD  60 yktsavkeektgrelvdvmchatftkrll 88 
                 +  + +++ek   +lv++   a + +  l
  EGE27868.1 264 FAATKMSTEKLAAQLVEAGFKARYLHGDL 292
                 33334444444444444444444444443 PP

>> CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1    0.0002      0.45      92     150 ..     160     216 ..     145     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
  CobA_CobO_BtuR  92 laseeydlvvlDEinyalklglldeeevlellkkkpeklelvlTGrnapeelleaADlv 150
                     +  +++d+++lDE   +l++g+   +++ e+l++ p++ + v++  + + ++ ++A+  
      EGE27868.1 160 VDLSKLDMLILDEADRMLDMGFA--DDIKEILQNTPQTRQTVMSSATWDGAVGKIAESF 216
                     4446899**************95..799**************99877777777776655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.2   0.00093       2.1      70     118 ..     115     191 ..      54     202 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00093
      AAA_22  70 a............................erlsseellealeqalraravielliiDEaqh.lrseealeeLrsllnl 118
                 +                              ++  +l++++++   + ++  +li+DEa++ l  +    +++++l +
  EGE27868.1 115 GmrnmfsvplvggapyggqlralkkgvqvIIATPGRLIDHMREGRVDLSKLDMLILDEADRmL-DMGFADDIKEILQN 191
                 3444444444446663444443333333322344445555555555555599*********66.66666666655553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 4221.98
//
Query:       EGE27869.1  [L=497]
Description: 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-22   80.5   0.0    3.4e-22   78.9   0.0    1.8  2  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
    4.7e-12   46.0   0.0    8.5e-12   45.1   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
      6e-10   39.2   0.0    1.1e-09   38.4   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    1.5e-08   35.2   0.0    6.2e-08   33.2   0.0    2.2  1  Methyltransf_25  Methyltransferase domain
    3.2e-07   30.0   0.0    5.9e-07   29.2   0.0    1.3  1  MTS              Methyltransferase small domain
    2.4e-05   23.8   0.0      4e-05   23.1   0.0    1.3  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    6.7e-05   22.6   0.0    0.00011   21.9   0.0    1.3  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    8.8e-05   22.4   0.0    0.00018   21.4   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    0.00061   20.4   0.0     0.0019   18.8   0.0    1.9  1  Methyltransf_11  Methyltransferase domain
    0.00093   19.1   0.0     0.0023   17.9   0.0    1.7  1  TRAM             TRAM domain
      0.002   17.9   0.0     0.0042   16.9   0.0    1.5  1  Met_10           Met-10+ like-protein
     0.0026   17.1   0.0     0.0045   16.3   0.0    1.3  1  N6_Mtase         N-6 DNA Methylase
     0.0026   17.4   0.0     0.0054   16.4   0.0    1.5  1  Cons_hypoth95    Conserved hypothetical protein 95
     0.0064   16.6   0.0      0.012   15.8   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase
     0.0079   15.5   0.0      0.013   14.8   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.015   15.3   0.0      0.028   14.4   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.047   14.4   0.0       0.13   13.1   0.0    1.8  1  Methyltransf_12  Methyltransferase domain
      0.077   12.7   0.0       0.13   11.9   0.0    1.3  1  GCD14            tRNA methyltransferase complex GCD14 subunit
       0.08   12.0   0.0       0.17   11.0   0.0    1.5  1  RrnaAD           Ribosomal RNA adenine dimethylase
      0.081   12.5   0.0        3.4    7.2   0.0    2.3  2  Methyltransf_15  RNA cap guanine-N2 methyltransferase
       0.16   12.1   0.2       0.33   11.1   0.2    1.5  1  zf-Mss51         Zinc-finger of mitochondrial splicing suppre
       0.17   11.6   0.0        2.4    7.8   0.0    2.2  1  UPF0020          Putative RNA methylase family UPF0020


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.1   1.7e+03       3      77 ..     124     204 ..     122     273 .. 0.63
   2 !   78.9   0.0   4.2e-25   3.4e-22     169     350 ..     311     488 ..     305     495 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.1
  tRNA_U5-meth_tr   3 eaqleekksrlkkllaefeapelevfesp....eehyrlraefrl.wheeddlyyimf.dqktkkkirvdefdaaseline 77 
                      +aq++ k+s lk+ll + +  e++++  p    +  yr++a + + +  ++d   + f +++++    ++e ++ +++i  
       EGE27869.1 124 DAQIDFKQSVLKELLIHQAGIEPDIWLKPlvgdRLGYRTKARMGVrYVAKKDSALVGFrERASNFLAELNECHILDKRIGF 204
                      567788888888888888888888775542211556777776654222233333333313344444455555555555554 PP

  == domain 2  score: 78.9 bits;  conditional E-value: 4.2e-25
  tRNA_U5-meth_tr 169 elvyrqvensftqPnaavnekmleWalevtqeskg.dllelycGnGnfslalarnfek...vlateiakssveaaqyniaankidnvqiirlsa 258
                      +l+y++    ftq n +vn+km++ a  +++ +kg  +l+l+cG Gnfsl lar++     v+  e +    e a++n  an i   ++    a
       EGE27869.1 311 DLTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGeRVLDLFCGLGNFSLVLARQVGEsgfVVGVEGSEQMTERAKMNACANGIAHTEF---YA 401
                      5789999999*********************9998579****************997656699*******************9998775...69 PP

  tRNA_U5-meth_tr 259 eeltealkkkrefrrlkgidlksyafetifvdPPraGldketvklvkky..erilyiscnPetlkenleelset.hrverlalfdqfpythhle 349
                       +lt+ l+++            + +f+++++dPPr+G  + +  l  k+  +ri+y+scnP tl+ + + l e+ +r++++ ++d f++t h+e
       EGE27869.1 402 KDLTQDLSDQP-------WATGNNRFDALLIDPPRSGAWEVMAYL-PKFnaKRIVYVSCNPVTLARDTKALIEAgYRLTHAGVMDMFSHTGHVE 487
                      9****999864.......34567899***********87655555.5552369***************99976439****************** PP

  tRNA_U5-meth_tr 350 s 350
                      s
       EGE27869.1 488 S 488
                      8 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0     1e-14   8.5e-12       2      81 ..     343     426 ..     342     466 .. 0.91

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1e-14
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.led..ekfDlilsn 81 
                      +kg rvlDl CG G+++++la+++g+ + vvG++ se++ e+A+ na  +g+   eF + d ++ l+ + ++   ++fD +l +
       EGE27869.1 343 QKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFYAKDLTQdLSDQpWATgnNRFDALLID 426
                      7899***************************************************************99999999****98876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   1.3e-12   1.1e-09      41     128 ..     312     399 ..     304     411 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.3e-12
                 GTTSSS-EEEETTEEE--HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEE CS
        PCMT  41 kaYedaplsigynatiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenviv 128
                  +Ye +pl+  + + + + +m+ la  ll+l+kg+rvL++ +G G  + vlar vge+g vv++e +++++e+ak n  ++++++  +
  EGE27869.1 312 LTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEF 399
                 57889999998888888999*******************************************************9988877776555 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   7.7e-11   6.2e-08       1      69 [.     348     424 ..     348     448 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 7.7e-11
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBC.CGBS.....SSTTTEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl.nvefvqgda.edlp.....fedgsfDlvv 69 
                      vLdl cG G+++l la+++g ++ v+gv+ se+m e+a+ +a ++g+ + ef+ +d+ +dl+       +++fD+ +
       EGE27869.1 348 VLDLFCGLGNFSLVLARQVGeSGFVVGVEGSEQMTERAKMNACANGIaHTEFYAKDLtQDLSdqpwaTGNNRFDALL 424
                      9******************769************************9*****9999954454222335777888876 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   7.3e-10   5.9e-07      15     106 ..     332     428 ..     325     436 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 7.3e-10
                 S--HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTT.......S-EEEEEE- CS
         MTS  15 klDkGsklLletlpkelsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleankle.vevvasdvleevee.......kkfdlivsN 104
                  +D +s+lL  +l+k   ++vlDl cG G  +++la++  e   v+ v+ + +  e ak n+ an+++ +e++a+d+++++++       ++fd+++  
  EGE27869.1 332 MMDLASSLL--NLQK--GERVLDLFCGLGNFSLVLARQVGESGfVVGVEGSEQMTERAKMNACANGIAhTEFYAKDLTQDLSDqpwatgnNRFDALLID 426
                 567777776..6666..778*******************999999**********************99********9998751222222567777777 PP

                 -- CS
         MTS 105 PP 106
                 PP
  EGE27869.1 427 PP 428
                 77 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.9e-08     4e-05      37     103 ..     334     400 ..     321     412 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.9e-08
                      HHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEE CS
  Ubie_methyltran  37 kfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkiniefl 103
                      +    l + ++g++vlD+ +G g++++ l+++vge+g vv+++ +e+m + ++  +  +g  + ef 
       EGE27869.1 334 DLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY 400
                      45566778899*********************************************99999988885 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.4e-07   0.00011       3      92 ..     339     432 ..     337     475 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.4e-07
                      HH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTC....CHHHHCC..EEEEEEEE--CCG CS
  Methyltr_RsmB-F   3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDark....idkvlggelfDriLlDaPCsgt 92 
                      lL++q++e++lDl ++ G     +a  + ++g vv v+ +++ ++r + n    g+ +t     D+++     +  +g++ fD +L+D P sg 
       EGE27869.1 339 LLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFYAKDLTQdlsdQPWATGNNRFDALLIDPPRSGA 432
                      79************************9************************99999999998888776321133445569**********9986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.2e-07   0.00018       8      70 ..     331     404 ..     323     486 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.2e-07
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevlren.gf..svtgvDlspeaveiae..............kakkaqkdq 70 
                      ++ d+   ll +l++g rvLd+ cG G+++ vl+++ g    v+gv+ s+++ e+a+                    kd 
       EGE27869.1 331 KMMDLASSLL-NLQKGERVLDLFCGLGNFSLVLARQvGEsgFVVGVEGSEQMTERAKmnacangiahtefyA-----KDL 404
                      5556666666.599*******************66636655699************9888777766443321.....222 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.3e-06    0.0019       1      54 [.     349     406 ..     349     426 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.3e-06
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCC CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl.kvefvvadaek 54 
                      Ld+ cG G ++  la+++   + vvgv+ s++m+++ak++a  +g+ + ef   d+++
       EGE27869.1 349 LDLFCGLGNFSLVLARQVgesGFVVGVEGSEQMTERAKMNACANGIaHTEFYAKDLTQ 406
                      7888***********888899***********************99987886666664 PP

>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.8e-06    0.0023      12      62 .]      35      92 ..      31      92 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.8e-06
                EEEE-.TTSEEEEEET...........TEEEEETT--T..TEEEEEEEEEE-SSEEEEEEE CS
        TRAM 12 veglsksegegiGrtdn..........gkvvfvpgdlpgIGdfVeVkItkvkrqyLrGell 62
                ++ l+ ++g g++  ++          gk vf++++lp  G+ V Vk t +k+++ +G++l
  EGE27869.1 35 ITNLA-HDGRGVAVYETdntthnpdkaGKKVFISFALP--GEAVLVKMTNSKKNFEEGDAL 92
                56666.888888876666699999999***********..***************999986 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.1e-06    0.0042      97     149 ..     341     394 ..     314     421 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.1e-06
                 T--TT-EEEETT-TTTCCHHHCCHH.TTSSEEEEEES-HHHHHHHHHHHHHTT- CS
      Met_10  97 lveegevVvdvfAGiGpfaipiaky.skakrvlaidlnPesvkylkeniklNkv 149
                   ++ge+V+d+f G G f++++a+  ++  +v++++   +  +  k n   N +
  EGE27869.1 341 NLQKGERVLDLFCGLGNFSLVLARQvGESGFVVGVEGSEQMTERAKMNACANGI 394
                 3799****************9997527888999998665555555555555444 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.5e-06    0.0045      33     141 ..     331     434 ..     328     455 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.5e-06
    N6_Mtase  33 evsklivellepksgesvyDpacGsggllvqaekvlkeedgktkelsiyGqeknettyrLakmNlllhgieykkvk..irlgdtlekpkfekdkkfdvv 129
                 +++ l  +ll+ ++ge v+D  cG g + +  ++++       ++  + G+e  e+ ++ akmN +  gi+  ++     ++d   +p+ + +++fd+ 
  EGE27869.1 331 KMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVG------ESGFVVGVEGSEQMTERAKMNACANGIAHTEFYakDLTQDLSDQPWATGNNRFDAL 423
                 5678889999******************999999884......566889*******9***************9986424456666778888******** PP

    N6_Mtase 130 vaNppfnqkewk 141
                 +  pp + + w+
  EGE27869.1 424 LIDPPRSGA-WE 434
                 *****9998.84 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.7e-06    0.0054      40     123 ..     343     429 ..     328     466 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.7e-06
                    HCC-EEEETT-TTSHHHHHHHHTT-SE...EEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS..--SS-EEEEEEE--SS CS
  Cons_hypoth95  40 iegarvLDlfaGsGalglEAlSRgakk...avlvekdkeavkilkenleelkleeetaelkedaleallkl..akkkeefdivflDPPy 123
                     +g+rvLDlf+G G  +l  l R++ +   +v ve ++++ +  k n  + ++ + t+ + +d +++l+ +  a  +++fd   +DPP 
     EGE27869.1 343 QKGERVLDLFCGLGNFSL-VLARQVGEsgfVVGVEGSEQMTERAKMNACANGIAH-TEFYAKDLTQDLSDQpwATGNNRFDALLIDPPR 429
                    57899************9.799*99762225668999999999999999999885.88888888888887722356789*********4 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.4e-05     0.012      16      70 ..     339     394 ..     329     475 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.4e-05
                 HT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEES.SSSHHHTTEEEECS-C CS
        FtsJ  16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpmaplpgvttiqgdi 70 
                    +++g++v+Dl ++ G++s vl++++g++g vv+v    +m+ + +++     i
  EGE27869.1 339 LLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGsEQMTERAKMNACANGI 394
                 4346799**********************99******9966665555555443333 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.6e-05     0.013      48     110 ..     330     394 ..     307     411 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--E..EEEEES-HHHHHHHHHHHHTS-S CS
        CMAS  48 laKldlileklelkpGmtlLdiGcGWGslvrraverydvk..vvglTlSkeqaklakkrvdeldl 110
                 ++ +dl+   l+l++G+++Ld+ cG G+     +++ + +  vvg+  S++ +++ak +  + ++
  EGE27869.1 330 QKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESgfVVGVEGSEQMTERAKMNACANGI 394
                 455899999*******************9999888876544478888787777777766555555 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.4e-05     0.028      13      89 ..     336     404 ..     323     423 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.4e-05
  Methyltransf_32  13 vakllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsi 89 
                       ++l     + ++ ++v+D+ +G g  s vla  ++  +  vvg++ +e+++e+a+  a + g  + ++++f  ++ 
       EGE27869.1 336 ASSL----LNLQKGERVLDLFCGLGNFSLVLAR-QVGESGFVVGVEGSEQMTERAKMNACANG--I-AHTEFYAKDL 404
                      3333....4447889******************.777899**************998887777..4.5555555544 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00016      0.13       1      70 [.     349     423 ..     349     444 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00016
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg....ssfDlv 70 
                      L++ cG G+++ +l+++  +   ++gv+ s+++ e+ak    +++  +++++  + +++l++++     + fD+ 
       EGE27869.1 349 LDLFCGLGNFSLVLARQVgESGFVVGVEGSEQMTERAKMNACANGIAHTEFYAKDLTQDLSDQPWatgnNRFDAL 423
                      7888**************5555555*********99999999999877777776666655444337777777765 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00016      0.13      33     123 ..     337     429 ..     322     455 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
       GCD14  33 imkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsq...lvtvthrDvckeGfdeevsgkvDavfLDlPa 123
                    L+l++G +v++   G g +s  +ar v+  G +  +e  eq +e+a+ +   +++++   + +  ++D+  + + ++ ++  Da+++D P 
  EGE27869.1 337 SSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHtefYAKDLTQDLSDQPWATG-NNRFDALLIDPPR 429
                 56799*****************************************************6633455666788888888555.5899999999885 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002      0.17      11      69 ..     325     386 ..     320     418 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                 -EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHH CS
      RrnaAD  11 nflknkkvineIldklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllq 69 
                 n  +n+k+++ + + lnl++   vl++  G G+++  La ++     vv +E  e++ ++ +
  EGE27869.1 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVgesGFVVGVEGSEQMTERAK 386
                 6679**********************************999986555777888888887765 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.093        75      77     108 ..     296     326 ..     274     339 .. 0.82
   2 ?    7.2   0.0    0.0042       3.4       3      53 ..     347     400 ..     345     433 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.093
  Methyltransf_15  77 lSpPwGGpsYkkqekfdlkkklkplkleqllk 108
                      + pP+GG  Y+   +fdl+++  pl ++q+  
       EGE27869.1 296 TVPPTGGLFYHLP-NFDLTYEFSPLDFTQVNL 326
                      569*****99865.6**********9999754 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0042
  Methyltransf_15   3 vilDlfsGaGGnviqfalv.....fekviaieinleklacaqhNaevYgvsdkitl 53 
                       +lDlf+G G  +  +a++     f  v+++e +++  + a+ Na + g+++  ++
       EGE27869.1 347 RVLDLFCGLGNFSLVLARQvgesgF--VVGVEGSEQMTERAKMNACANGIAHTEFY 400
                      79***************99766444..******************99999876444 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2    0.0004      0.33      11      38 ..      99     126 ..      80     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0004
    zf-Mss51  11 apkhvdfeCpdCGiptycseehwedDye 38 
                 ++++++  Cp+ G+   cs +hw++D +
  EGE27869.1  99 HSQRQTPPCPHFGVCGGCSLQHWQADAQ 126
                 36778889******************87 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0029       2.4      79     130 ..     372     428 ..     332     430 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0029
                 EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.....STTS---EEEE--- CS
     UPF0020  79 lygsDldrrvvqgareNaekagvgdliefsqadaakLr.....lkegevdvivtnpP 130
                 ++g++  ++++++a+ Na + g++++  + +   ++L        ++ +d+++ +pP
  EGE27869.1 372 VVGVEGSEQMTERAKMNACANGIAHTEFYAKDLTQDLSdqpwaTGNNRFDALLIDPP 428
                 899***********************9999999999998777767778999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3347.93
//
Query:       EGE27870.1  [L=42]
Description: hypothetical protein EA1_00765 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 324.24
//
Query:       EGE27871.1  [L=74]
Description: hypothetical protein EA1_00770 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.72    9.9   3.3          1    9.5   3.3    1.3  1  UPF0370   Uncharacterised protein family (UPF0370)


Domain annotation for each model (and alignments):
>> UPF0370  Uncharacterised protein family (UPF0370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.3   5.6e-05         1       1      36 [.      36      72 ..      36      74 .] 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 5.6e-05
     UPF0370  1 meWLa.dYWWvillllvGillngikeLkrvdhkkfLd 36
                m WL+    W+++l+ v i++  + ++  v ++++L+
  EGE27871.1 36 MLWLKtAISWILILIAVQIIIRFVMDMGEVFNNSYLT 72
                889961578*********************9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 575.19
//
Query:       EGE27872.1  [L=257]
Description: 3'-5' exonuclease [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-57  193.0   0.1    5.8e-57  192.8   0.1    1.0  1  DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the ex
    1.3e-12   48.0   0.1    5.6e-12   46.0   0.0    2.0  2  RNase_H_2       RNase_H superfamily
    0.00029   20.1   0.1    0.00056   19.2   0.0    1.5  2  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain


Domain annotation for each model (and alignments):
>> DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.8   0.1   9.7e-61   5.8e-57       2     213 .]      50     255 ..      49     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 192.8 bits;  conditional E-value: 9.7e-61
  DNA_pol_B_exo2   2 dFlrlalhrvvaisvvkarkdekfkvkslgeeessekelikkffegvekkkpqlVsfngrgfDlpvleyralkhgvsapkyfdegdedrekkwnn 96 
                     +F+rl+lh++ + s++ + +  +f++ksl+ ++ seke++ +f+++++k kp lVs+ng +fDlpvl++r++ h++sap++f + +     k+  
      EGE27872.1  50 EFMRLPLHKIACLSFL-WFDGTTFHLKSLTLQTMSEKEILVNFLRAFDK-KPVLVSWNGLAFDLPVLMHRSMHHQLSAPALFGSAQ-----KFG- 136
                     8***************.889999************************86.79******************************9999.....787. PP

  DNA_pol_B_exo2  97 ylsrystrhlDLmdllseygaranakLdelakllglPGKlgvdGskVaelyqegklkeireYcetDvlnTYlvylrlellrgklseeeyaeeiaq 191
                     y  ry + h+DLmd  + ++++ ++kLd++a+l+g+ GK ++dGs+V  ++q++++++++ Yce+DvlnT+l+ylr+ +l+gk s++e ++ i++
      EGE27872.1 137 YSYRYGEMHIDLMDKTALHNNKLHQKLDTVASLCGFAGKGNLDGSQVLPMVQNSQWDALSCYCESDVLNTWLIYLRWLTLTGKSSTDECQALIDK 231
                     99********************************************************************************************* PP

  DNA_pol_B_exo2 192 vrellekeke..ekehlkefleaw 213
                     +++++++ ++  +k ++++fl+aw
      EGE27872.1 232 TNQFVQSLTNsaGKLRHQSFLDAW 255
                     ****98766644677799999998 PP

>> RNase_H_2  RNase_H superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.46   2.7e+03       1       8 [.       7      14 ..       7      19 .. 0.82
   2 !   46.0   0.0   9.4e-16   5.6e-12      17     165 ..      59     213 ..      53     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.46
   RNase_H_2  1 lffDiEtt 8 
                l fDiEt+
  EGE27872.1  7 LVFDIETM 14
                57*****8 PP

  == domain 2  score: 46.0 bits;  conditional E-value: 9.4e-16
   RNase_H_2  17 iyliGvldvdekeiekltqllaeepeeekailelflellekkkalvtfngksFDvpflkrlfkkyklde.......eef........rhiDLlkel..r 98 
                 i  +++l++d+ +++ l+ l  ++++e++++   fl  + kk+ lv++ng +FD+p+l ++   ++l+        ++f         hiDL+  +  +
  EGE27872.1  59 IACLSFLWFDGTTFH-LKSLTLQTMSEKEILVN-FLRAFDKKPVLVSWNGLAFDLPVLMHRSMHHQLSApalfgsaQKFgysyrygeMHIDLMDKTalH 155
                 567889999999998.88888889888888888.77***********************9994555555558998833344455556*****9855448 PP

   RNase_H_2  99 kkklesysLksvekelgierreedlsGsqavklyqeylrtgdeellekilaYNedDvralatlyekl 165
                 ++kl++ +L +v+   g+  +  +l+Gsq+  + q+       + ++++  Y+e Dv++++ +y ++
  EGE27872.1 156 NNKLHQ-KLDTVASLCGFAGK-GNLDGSQVLPMVQN-------SQWDALSCYCESDVLNTWLIYLRW 213
                 888899.**************.7*******988765.......67******************9766 PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       0.7   4.2e+03     161     169 ..       6      14 ..       5      18 .. 0.80
   2 !   19.2   0.0   9.3e-08   0.00056     237     284 ..      83     128 ..      77     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.7
                     EEEEEEEET CS
  DNA_pol_B_exo1 161 vlsFDIeck 169
                     +l FDIe++
      EGE27872.1   6 ILVFDIETM 14 
                     688****96 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 9.3e-08
                     SHHHHHHHHHHHHHHH--SEEEESSTTTTHHHHHHHHHHHCCTCCHCG CS
  DNA_pol_B_exo1 237 sEkelLqaflefikqydPdvitgYNidnFDlpYilnRakelykvklsk 284
                     sEke+L +fl  + ++   v++ +N+  FDlp++++R ++ +    + 
      EGE27872.1  83 SEKEILVNFLRAFDKK--PVLVSWNGLAFDLPVLMHRSMHHQLSAPAL 128
                     8*************99..*******************99555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1900.96
//
Query:       EGE27873.1  [L=309]
Description: cysteine synthase B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-67  225.8   0.4    1.3e-66  225.1   0.4    1.3  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.016   15.0   0.3      0.027   14.3   0.3    1.3  1  DFP       DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.1   0.4   1.4e-70   1.3e-66       2     294 .]      20     294 ..      19     294 .. 0.92

  Alignments for each domain:
  == domain 1  score: 225.1 bits;  conditional E-value: 1.4e-70
                 GGCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHH CS
        PALP   2 tlgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvall 97 
                 ++ +g+TPlv+l+ l+k+ ++ l++KlE+ np gS+KdR a ++++++++    ++++t++ea+sGN+g+alA++aa+ G++ t+++pa++++e+++++
  EGE27873.1  20 SDCVGNTPLVKLNTLAKDSQATLLAKLEGNNPAGSVKDRPAFNMIYQAEQRgqiKPGDTLIEATSGNTGIALAMVAAMRGYQMTLLMPANSTQERKDAM 118
                 5789*******************************************88888*********************************************** PP

                 HHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTT CS
        PALP  98 rllGaevvevggdydeavaaaaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegs 195
                  ++Ga+++ev ++ ++a+++a ++ a+ +  ++++qf+n ++ ++ y t+g+E+++q+ gk++++v ++G+ g+i+G++++lke++p +++ig +p++ 
  EGE27873.1 119 TAYGATLIEVADGMEAARDMALQMQAD-GQGIVLDQFNNTDNKHAhYLTTGPELWQQTEGKITHFVSSMGTTGTIMGVSQYLKEQNPAIQIIGLQPDEQ 216
                 **********999**************.*********************************************************************77 PP

                 CGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHH.SEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-H.HHHHHHHHHHHHHHHCCTTCEEEEEEE CS
        PALP 196 dalarslragrrvtvpvsdtiadglavgspselafell.drlvdeivtvsdeealeamrllarregivvep.ssaaalaalklreagelkegdrvvvil 292
                 +++a+ +                      p+e+   ++ + lvd+i+ v++  a + mr+lar+egi+++  s++aa aa   + a++ ++  ++v+i 
  EGE27873.1 217 SSIAGIR-------------------RW-PAEYLPGIFdASLVDTIMDVNQTNAERYMRKLAREEGIFCGVsSGGAAWAAH--QIAKNTPNA-VIVFIA 292
                 7777666...................44.4444444443667788888***********************6666666666..778888887.9**999 PP

                 -B CS
        PALP 293 tg 294
                 ++
  EGE27873.1 293 CD 294
                 86 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3     3e-06     0.027      26      75 ..      82     135 ..      71     150 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-06
                 ----HHHHHHHHHHHHTT-EEEEEE-S-SS--......-TT-EEEE--SHHHHHHH CS
         DFP  26 rSSGkmGyalAeaaaarGaeVtlvsgpvslet......pegvevvkvesaeemlea 75 
                   SG +G+alA  aa rG + tl     s+++        g+++  +e a+ m++a
  EGE27873.1  82 ATSGNTGIALAMVAAMRGYQMTLLMPANSTQErkdamtAYGATL--IEVADGMEAA 135
                 67*********************987755444122211112233..3334444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2315.62
//
Query:       EGE27874.1  [L=41]
Description: hypothetical protein EA1_00785 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 308.66
//
Query:       EGE27875.1  [L=988]
Description: two-component system sensor histidine kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-27   95.6   0.3    4.9e-27   94.7   0.3    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    1.9e-21   76.3   0.7    5.4e-21   74.9   0.1    2.1  2  Response_reg  Response regulator receiver domain
    2.2e-20   72.4   3.2    2.6e-20   72.2   0.1    3.0  3  HisKA         His Kinase A (phospho-acceptor) domain
    9.1e-08   32.3   0.8    2.9e-07   30.7   0.1    2.3  2  Hpt           Hpt domain
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.049   13.5   0.0    1.5  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
      0.028   14.5   0.0        2.1    8.5   0.0    2.5  2  FeoC          FeoC like transcriptional regulator


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.3   1.6e-30   4.9e-27       1     110 [.     433     549 ..     433     551 .. 0.91

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 1.6e-30
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEE.. CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikase..ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwv.. 94 
                 gd+ r++qi+ nlv+Na+kf t++g++ v+++  e  ++l+i+veD+G+Gi+++d ++lf++f q d s +r++ggtGlGl i+k+l++lmgG+i +  
  EGE27875.1 433 GDSLRVKQILTNLVGNAIKF-TDMGSVVVRVSLAEktGYLCIEVEDTGKGISESDKEQLFQSFGQgDLSVTRRYGGTGLGLVISKQLTQLMGGSIGFid 530
                 7999****************.99**9999999844569***************************99999999************************65 PP

                 .EEET..TTEEEEEEEEES CS
   HATPase_c  95 .esep..grGttftftlpl 110
                  +se   + G tf+f++p+
  EGE27875.1 531 nRSENiaNAGATFWFEMPM 549
                 533337788******9997 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.7     5e+03      12      50 ..     584     623 ..     578     624 .. 0.64
   2 !   74.9   0.1   1.8e-24   5.4e-21       1     111 [.     706     826 ..     706     827 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.7
                   HHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH..ESEEEEE CS
  Response_reg  12 ellrqlleeegyeevaeaedgkealellkeek..vdlillD 50 
                   ++l++ l   ++ + + a   +++le+l++++  +d +++D
    EGE27875.1 584 RVLKSSLVGTKV-QLTIAIGLADLLEKLDKNEmdYDWVIVD 623
                   555555655555.5566666778888885555449999988 PP

  == domain 2  score: 74.9 bits;  conditional E-value: 1.8e-24
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH......ESEEEEESSCSSSEHHHHHHHHHHCT.....TTSEEEEEESSTSHHHH CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek......vdlillDinmpgmdGlellkeireed.....pelpviiltahseeeda 86 
                   +l vdD+  ++ +l  ll e g+ ev +a++g ea+e + ++       +d+i++D++mp+m+Gle+  eir+ +     + +p+i+ltah+ ++++
    EGE27875.1 706 ILAVDDHLPNLLVLDALLAELGV-EVVTANSGFEAIERMTQSItgstppIDMIFMDVQMPRMSGLETSIEIRKIEqahlsKPVPIIALTAHGLSDEK 801
                   899********************.9**************6665566788******************999998886666666*************** PP

                   HHHHHCTESEEEESSG-HHHHHHHH CS
  Response_reg  87 vealkagaddflsKpfdpeeLlkal 111
                    + ++ g +d++sKp+ + +L++ l
    EGE27875.1 802 DQLVSSGLNDYVSKPIGEVQLVQTL 826
                   *********************9987 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2       4.7   1.4e+04      29      58 ..      57      83 ..      50      85 .. 0.67
   2 ?   -2.0   0.0       1.3   3.9e+03      15      45 ..     232     276 ..     232     284 .. 0.59
   3 !   72.2   0.1   8.8e-24   2.6e-20       1      67 []     320     386 ..     320     386 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.7
                C..T-HSSCHHHHHHHHHHHHHHHHHHHHH CS
       HisKA 29 regklteelkeyletiesearrldhlvedl 58
                r   ++  ++ +l +++   +rld+ v ++
  EGE27875.1 57 R---YDAIVRPLLTDLQHRQNRLDERVAQM 83
                4...56666777778888888888777665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHC................T-HSSCHHHHHHHH CS
       HisKA  15 tPLsailgnaeaLkre..............gklteelkeyletie 45 
                 tPL  ++++++ L  +              + l+++  +++++++
  EGE27875.1 232 TPLYEMRLYLQRLNTDnlsrvpqlktsgefALLRDDFTRAVRRLH 276
                 788888999998844446777774444444444444444444444 PP

  == domain 3  score: 72.2 bits;  conditional E-value: 8.8e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +++ fla+++HELrtPL++i g++ +L r+g+lt e+  y++ti++++ +l++lv+d+Ld+s+ieag
  EGE27875.1 320 AKSAFLANISHELRTPLNSIDGFINLLARKGELTGEQNLYVQTIKKSSAHLLALVNDVLDFSKIEAG 386
                 5899***********************999***********************************97 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         6   1.8e+04      15      29 ..     291     296 ..     275     306 .. 0.46
   2 !   30.7   0.1   9.7e-11   2.9e-07       2      80 ..     886     967 ..     885     974 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6
                 HHHHHHHSCCHHHHH CS
         Hpt  15 eqleqaldqedlqel 29 
                           dlq++
  EGE27875.1 291 H---------DLQQA 296
                 2.........22222 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 9.7e-11
                 HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCHHHHHHHH....HHHHHHH CS
         Hpt   2 llelfleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlldragelelepelle....alkalle 80 
                 lle++++ a+ + ++le+a++++d+ +la++ H++ G+a++ G+++l+++ + +E+++ r+   +++p+++     a +al++
  EGE27875.1 886 LLEMLIDGADSERQSLERAWADRDRVSLADISHRMVGAARYAGVPRLRAVSEIFESAC-RNDITAVTPSHFIalrpAYRALID 967
                 89******************************************************88.677777777777655553333333 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.6e-05     0.049       5      77 ..     440     512 ..     436     521 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
  HATPase_c_3   5 kAlaelvdNsld.Adaenvkievnknr.gktgeivieDdGkGmseeelknalr.latsskeakrkstslGkkGiGl 77 
                  + l+ lv N++   d+ +v + v+  + +    i +eD GkG+se++ ++ ++ +++ + +     + +G  G+Gl
   EGE27875.1 440 QILTNLVGNAIKfTDMGSVVVRVSLAEkTGYLCIEVEDTGKGISESDKEQLFQsFGQGDLS---VTRRYGGTGLGL 512
                  56899******999999988888866524568999************99988647766666...466777777774 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00069       2.1      12      48 ..     320     356 ..     316     363 .. 0.90
   2 ?    3.0   0.0     0.035   1.1e+02       4      23 ..     900     919 ..     899     922 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00069
        FeoC  12 rgrvslkeLsrhfkaspealeamLeqwvrkGrvekva 48 
                  +++ l ++s+++++  + +++ ++++ rkG ++ ++
  EGE27875.1 320 AKSAFLANISHELRTPLNSIDGFINLLARKGELTGEQ 356
                 688999*************************998765 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.035
        FeoC   4 elkeyleergrvslkeLsrh 23 
                 +l+ + + r rvsl ++s++
  EGE27875.1 900 SLERAWADRDRVSLADISHR 919
                 6888999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 6641.12
//
Query:       EGE27876.1  [L=30]
Description: hypothetical protein EA1_00795 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-07   29.9   0.4    4.2e-07   29.9   0.4    1.0  1  DUF2892   Protein of unknown function (DUF2892)


Domain annotation for each model (and alignments):
>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.4   2.4e-11   4.2e-07       1      28 [.       1      28 [.       1      30 [] 0.94

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.4e-11
     DUF2892  1 MkkNvgtldRilrivvGlvllllallgl 28
                M+ N +++dRi+riv+G++l++l l+++
  EGE27876.1  1 MQANLHQVDRIIRIVIGIALIVLPLFAV 28
                99*********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 235.12
//
Query:       EGE27877.1  [L=277]
Description: phosphatidylserine decarboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-59  200.8   0.0      2e-59  200.5   0.0    1.1  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.5   0.0   1.1e-63     2e-59       1     199 [.      61     273 ..      61     274 .. 0.96

  Alignments for each domain:
  == domain 1  score: 200.5 bits;  conditional E-value: 1.1e-63
  PS_Dcarbxylase   1 lneffvrklkdgaRpidddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsgkvee 95 
                     +n+ff+r+lk++aRpid++p+ +++PaDg+i+qig+i++g+++q+Kg ty++ +Ll ++ +  ++ f ng+f++iyL+p +yHr+h+P +g+++ 
      EGE27877.1  61 FNDFFTRELKSDARPIDETPNQLICPADGTISQIGDIKQGMILQAKGRTYEIGQLLADYDD--GQYFMNGSFATIYLAPSNYHRVHMPFDGQLTA 153
                     8*********************************************************988..88****************************** PP

  PS_Dcarbxylase  96 rrhipGellsvnpsalkelrglftlneRvvlvie.wkGkvavvpvGatnvgsivln.............vlkgdelkkGeelGyFqfGStvvlvf 176
                      r++pG+l+svn + +k+ ++lf++neR +++++ ++G+ avv vGa++v  i+                 ++ +l+kG+elG F +GSt ++++
      EGE27877.1 154 TRYVPGTLFSVNHTTAKHVPDLFARNERLICLFDtSFGRAAVVMVGAMIVAGIESVatgkinrtphiqyRTHELTLSKGDELGRFYLGSTAIIIL 248
                     **********************************669*******************************966999********************* PP

  PS_Dcarbxylase 177 eag..kfieslvekgqkvkmGeklg 199
                     ++   ++   +++ g+kv mG+++g
      EGE27877.1 249 PKSahNDWLAHITHGKKVMMGQAIG 273
                     *885544556788999*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2222.94
//
Query:       EGE27878.1  [L=146]
Description: membrane protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-35  119.5  12.6    9.2e-35  119.1  12.6    1.2  1  DUF454       Protein of unknown function (DUF454)
  ------ inclusion threshold ------
      0.023   13.2   0.2      0.036   12.5   0.2    1.3  1  FHIPEP       FHIPEP family
       0.16   11.7   3.4        3.4    7.3   0.1    2.3  2  Tetraspanin  Tetraspanin family
       0.63   10.4  22.5        1.4    9.3   2.8    2.9  2  DUF308       Short repeat of unknown function (DUF308)
          2    8.3   7.3         10    6.0   1.0    2.3  2  DUF2721      Protein of unknown function (DUF2721)
        8.5    7.0   8.6         14    6.3   2.4    2.2  2  DUF3899      Domain of unknown function (DUF3899)


Domain annotation for each model (and alignments):
>> DUF454  Protein of unknown function (DUF454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1  12.6   3.1e-38   9.2e-35       1     114 [.      29     144 ..      29     145 .. 0.95

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 3.1e-38
      DUF454   1 rllllllGllslalGviGivlPlLPTtpFlLlAafcfarssprlhrwLlehklfgpyirdwrekraitlkaKvialllmllsllislll..veslwvki 97 
                 r+++++lGl++l+lG+iGiv+P++PTt+F+LlA +++arss+r+++wLl+h+lfg++i +w+++rai++ aK++a ++m+ls +i+++   ++  wv++
  EGE27878.1  29 RAVYFVLGLVCLILGLIGIVVPGMPTTVFILLAGYFWARSSRRFYAWLLAHRLFGQMIINWQTHRAIPRFAKYLAWSMMSLSTIILFFKlpSSWQWVAW 127
                 689**********************************************************************************99996555589999 PP

      DUF454  98 llalvllvvllyilrip 114
                 lla++ l+v ++++r+p
  EGE27878.1 128 LLAAISLGVGIWMARLP 144
                 *************9998 PP

>> FHIPEP  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   1.2e-05     0.036     234     289 ..       7      66 ..       2      79 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
                 XXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXX CS
      FHIPEP 234 ivtrvaseenlgeeivkqllanpkalliaagvllllal....vpglpklvflllaallal 289
                 ++t  + ++ + +++++q +  + ++++ ++v+l+l+l    vpg+p++vf+lla+ + +
  EGE27878.1   7 MITPLKPTQPTPKNLIHQSALMRAVYFVLGLVCLILGLigivVPGMPTTVFILLAGYFWA 66 
                 5666666677778889998888889999999988888755568************98765 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0011       3.4      42      70 ..      21      49 ..      13      83 .. 0.85
   2 ?    5.2   0.5    0.0052        15       9      26 ..     123     140 ..     118     145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0011
                 ...........XXXXXXXXXXXXXXXXXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin 42 saedpailaillivvGvllfllgflGcig 70
                   +++a ++ +++v+G + ++lg++G++ 
   EGE27878.1 21 LIHQSALMRAVYFVLGLVCLILGLIGIVV 49
                 56778888888999999999999999875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0052
                  XXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxx RF
  Tetraspanin   9 nllfwligivllavGvwl 26 
                   ++ wl++++ l+vG+w+
   EGE27878.1 123 QWVAWLLAAISLGVGIWM 140
                  5899*************9 PP

>> DUF308  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  11.8    0.0075        22       1      31 [.      34      64 ..      34      87 .. 0.92
   2 ?    9.3   2.8   0.00045       1.4      36      71 ..     108     140 ..     102     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0075
      DUF308  1 llGillivlGilalllPvaallalvllfGil 31
                +lG+++++lG++ +++P++ +++++ll G +
  EGE27878.1 34 VLGLVCLILGLIGIVVPGMPTTVFILLAGYF 64
                68**********************9999966 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00045
      DUF308  36 GivqiiaafaarkknrggrwlglllGilyliaGlll 71 
                 ++  ii  f+  +++++  w   ll++++l +G+++
  EGE27878.1 108 SLSTIILFFKLPSSWQWVAW---LLAAISLGVGIWM 140
                 56778999999999998888...9***********9 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.0    0.0034        10      95     114 ..      26      45 ..      20      49 .. 0.83
   2 ?    5.8   0.7     0.004        12      69     107 ..      99     135 ..      91     143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0034
     DUF2721  95 sllaailfvlalllllvsll 114
                 +l+ a+ fvl+l++l+++l+
  EGE27878.1  26 ALMRAVYFVLGLVCLILGLI 45 
                 5677899***********98 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.004
     DUF2721  69 llvlsallvvlvvlllflsallsldlsllaailfvlall 107
                 + +l+  +++l+ ++lf+   l  +++++a +l++++l 
  EGE27878.1  99 AKYLAWSMMSLSTIILFF--KLPSSWQWVAWLLAAISLG 135
                 56899999999999***9..4456777777777776664 PP

>> DUF3899  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   2.4    0.0047        14       4      21 ..      32      49 ..      31      51 .. 0.91
   2 ?    4.5   0.4     0.016        48      10      75 ..      56     129 ..      52     138 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0047
     DUF3899  4 lFllglllliigillivl 21
                +F+lgl++li+g++ iv+
  EGE27878.1 32 YFVLGLVCLILGLIGIVV 49
                8*************9985 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.016
     DUF3899  10 llliigillivlnsGfFdgfsygfrklkklflkk..skkddsyyeykekkkes......skkstrplliiGlll 75 
                 +++++++ ++  +s  F ++ + +r +++++++      + ++ +y ++ + s      ++k  + + +++ ll
  EGE27878.1  56 VFILLAGYFWARSSRRFYAWLLAHRLFGQMIINWqtHRAIPRFAKYLAWSMMSlstiilFFKLPSSWQWVAWLL 129
                 789999999*****************999988767744444555555553333333555444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1112.33
//
Query:       EGE27879.1  [L=440]
Description: adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-125  419.3   0.0   1.5e-125  419.1   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
     0.0015   17.9   0.0     0.0025   17.2   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
       0.15   11.2   0.0       0.23   10.6   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  419.1   0.0  2.5e-129  1.5e-125      11     405 ..      24     418 ..      14     419 .. 0.97

  Alignments for each domain:
  == domain 1  score: 419.1 bits;  conditional E-value: 2.5e-129
                  EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHH CS
  Aminotran_3  11 lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlar 108
                  l +  a+G+ +  +dg  ++D +ss++ +++G++hP +++a+ eq+ k+sh++fg lt+epa+kl + ll+++pk l+++f+a+sGs Ave+AlK+a 
   EGE27879.1  24 LPVACAKGCQIHLQDGTVLIDGMSSWWCAIHGYNHPVLNAAITEQLTKMSHIMFGGLTHEPAIKLGQLLLSIVPKPLQHIFYADSGSVAVEVALKMAV 121
                  677889******************************************************************************************** PP

                  HHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-S.CETTT CS
  Aminotran_3 109 kyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEp.iqgeg 205
                  +y+++ ++t k++i++ ++++HG+t++a+sv+++ +++++ fg+ lp  +++ +p    +k  + +++a++  ++   k++++++aA+i+Ep +qg+g
   EGE27879.1 122 QYQHALGKTTKNNIMTTRSGYHGDTWNAMSVCDPITGMHQIFGDALPSRIFVDAPT---IKIDDPWDDAAMDDIRLAFKRHHKNLAAFIIEPiVQGAG 216
                  *******************************************************5...88999************99******************** PP

                  TSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS.....B--TTTT-HHH CS
  Aminotran_3 206 GvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs.....hgsTfgGnpla 297
                  G+ ++  ++l++lr+lc++++vlli+DE++tGfGrTG lfA+eha v pD+m+l+KaltgG ++lsavl+t++v+++++ g+     hg+Tf++npla
   EGE27879.1 217 GMRFYHTNYLRQLRKLCDEYGVLLIFDEIATGFGRTGRLFACEHAKVVPDIMCLGKALTGGyMTLSAVLTTTKVAHTISHGKvgafmHGPTFMANPLA 314
                  *********************************************************************************9**************** PP

                  HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHH CS
  Aminotran_3 298 cavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdeei 395
                  cavala+++++ ++ ++ +++++ +  +  L++l++ + ++++vR +G++ ++e+++++++    i ++  + G++i+++G ++++l+pp+ii+d+e+
   EGE27879.1 315 CAVALASVQLLLQSPWQYHVRRIARTCRMTLTHLKQLP-HVADVRILGAIAVVEMTDPVDMA--IIQQECVARGIWIRPFG-RLVYLMPPFIISDDEL 408
                  ***********************************999.*********************76..788999***********.**************** PP

                  HHHHHHHHHH CS
  Aminotran_3 396 delleilkka 405
                  + ll  + + 
   EGE27879.1 409 ATLLHEFTDL 418
                  ****999876 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.2e-07    0.0025      48     167 ..     101     243 ..      70     245 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.2e-07
                      SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHC..C--EEEEE-EBTT.......................TBE-HHHHHH CS
  Beta_elim_lyase  48 eaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiael..agvklrdlknkea.......................Gkmdleklea 116
                      ++++++ +G  A +++lk+ +q +++   t +++i+++  g +     a +   ++++ ++                        +  +++++ 
       EGE27879.1 101 QHIFYADSGSVAVEVALKMAVQYQHALGKTTKNNIMTTRSGYHGDTwnAMSVCDPITGMHQifgdalpsrifvdaptikiddpwDDAAMDDIRL 194
                      56677889*************99999999999****999999999853344456677777799******************************* PP

                      HS--S-TTS-EEEEEEEESSBTTTTT.B---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 117 aikevgaheekiklisltvTnntagG.qvvsleelrevaaiakkygiplhlD 167
                      a k+   h+++ ++ +++  ++ agG + +  ++lr++++++++yg+ l++D
       EGE27879.1 195 AFKR---HHKNLAAFIIEPIVQGAGGmRFYHTNYLRQLRKLCDEYGVLLIFD 243
                      ****...89999999999999999995689*******************999 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.8e-05      0.23     170     343 ..     226     391 ..     221     400 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.8e-05
                    HHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH.....HHHHHHH..HHHHHHTSSHHHHH CS
  Aminotran_1_2 170 leklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna.....avvsqlr..klsrpflsssllqa 258
                    l++l +l+++y++ll++De+  gf  +   ++  +a+v ++   +    l+Ka  l+G   Gy + +a     +v+ ++   k+ +++  ++ ++ 
     EGE27879.1 226 LRQLRKLCDEYGVLLIFDEIATGFGRTGRLFACEHAKVVPD---IM--CLGKA--LTG---GYMTLSAvltttKVAHTIShgKVGAFMHGPTFMAN 311
                    4555555*************999999854332224444443...33..46776..577...77777776766655555541144455555777754 PP

                    ..HHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTE CS
  Aminotran_1_2 259 ..avaaal.sdallkqseleemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgr 343
                      a+a al s +ll qs  +  ++r+++  +    +L++l    ++ +l   +++ ++  +++ ++  ++++++ + g++++p        +
     EGE27879.1 312 plACAVALaSVQLLLQSPWQYHVRRIARTCRMTLTHLKQLphvaDVRIL---GAIAVVEMTDPVDMAIIQQECVAR-GIWIRP--------F 391
                    1133444404444444577777777877777777777776743333333...466666667777555555557777.777777........4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3361.75
//
Query:       EGE27880.1  [L=399]
Description: 8-amino-7-oxononanoate synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-45  154.7   0.0    4.1e-45  154.5   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
       0.12   11.6   0.0       0.28   10.4   0.0    1.5  2  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.0   4.6e-49   4.1e-45       2     361 ..      42     388 ..      41     390 .. 0.91

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 4.6e-49
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHH...HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaeke...galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpg 93 
                    +++nL+sn+ylg +++    +e ++   e    ++a++++  +g+++    le+++a+++g        r   +++ sG++a+i +l+++++   +
     EGE27880.1  42 PLLNLASNDYLGIASQtSLYEEFLELLHEqrwPFSASSSRLLTGNFENFERLETKMASLFG--------RP-CLLFNSGYHANIGILPAICD--DK 126
                    679**********9998888888888888999*****************************........77.8******************8..** PP

                    -EEEEEESS-THHHHHHHHTTSE.EEEEEBEETTTTEE-HHHHHHHHTTHHCTTE.TEEEEEEESS-TTT--B--HHHHHHHHHHHHHT.TEEEEE CS
  Aminotran_1_2  94 deilvpdptyasyknilrlsgge.vvryplyseedfhldlealeealkeapegnk.ktkvilvesphNPtGtvatleeleklldlakky.nlllfv 186
                    ++il++++++as++++ +l+      +++++     h +l +le+++++ +++n   + ++++es+++++G++ +l +l  l   + +y +++l+v
     EGE27880.1 127 TVILADKLVHASIIDGMQLAAKHgTKTIRYQ-----HQNLPQLERLIQKYQSDNGiCRIIVVTESIFSMDGDITNLSHLSHL---KAQYpKVMLYV 214
                    ******************9866667777766.....*************8887765888999********************...99999****** PP

                    EETTTTCBSSSS..HTHHHHGGSTTSTT..EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 187 DeaYagfvfgsl..davatranveeepn..llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemr 278
                    Dea+a++v g    + v+   +v    n  ++ivg ++Ka++++G   Gy+++++ ++++l +  rp+++s++l+++  a+    l+ +  ++++r
     EGE27880.1 215 DEAHAIGVRGGRglGCVE-EYGVI---NqvDFIVGAFGKALASVG---GYCICHPILRDYLINKMRPLIFSTALPPINIAWSCFILEQIPLMNQRR 303
                    **********76222222.44444...3556**************...***************************************999****** PP

                    HHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHH CS
  Aminotran_1_2 279 qrlqkrrkelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelve 361
                    + l k+++ l +    + l++ +  s ++++ ++++++   ++  L  + g++v++++++tv   ++rlRi++ ++ ++++++++ +
     EGE27880.1 304 KYLMKLSDDLSKVVHLAKLPCPS-ASQIIPIILGDNARTLNAAADLGRQ-GYHVLAVRPPTVpkgQSRLRICLnSTINDDTMTKFTQ 388
                    *************9667999876.5************99999999****.99999999****999**************99998765 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.1e-05      0.28      32     154 ..      88     204 ..      82     217 .. 0.81
   2 ?   -3.1   0.0       0.4   3.6e+03     167     179 ..     337     349 ..     331     353 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.1e-05
                      HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS CS
  Beta_elim_lyase  32 ktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgahe 125
                      ++++rLe ++a lfg  + lf  +G  An   l +++  ++ +++++  h       ++a+  g k +  ++++    +le+l ++ + ++   
       EGE27880.1  88 ENFERLETKMASLFGRPCLLF-NSGYHANIGILPAICDDKTVILADKLVHASIIDGMQLAAKHGTKTIRYQHQN--LPQLERLIQKYQSDN--- 175
                      799*************99887.79*************9999999999999999888888888888666655555..666666666666633... PP

                      -EEEEEEEESSBTTTTTB---HHHHHHHH CS
  Beta_elim_lyase 126 ekiklisltvTnntagGqvvsleelreva 154
                         ++i++t  + ++ G +  l +l  ++
       EGE27880.1 176 GICRIIVVTESIFSMDGDITNLSHLSHLK 204
                      58999999999999999999998888776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.4
                      EETTHHHHHHHHT CS
  Beta_elim_lyase 167 DgARfanaakslg 179
                      D AR +naa+ lg
       EGE27880.1 337 DNARTLNAAADLG 349
                      99******98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3015.47
//
Query:       EGE27881.1  [L=290]
Description: biotin biosynthesis protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-06   28.8   0.0    3.5e-06   27.6   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
     0.0011   19.7   0.0     0.0026   18.4   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
     0.0039   17.0   0.0     0.0097   15.8   0.0    1.7  2  Methyltransf_23  Methyltransferase domain
     0.0054   17.4   0.0      0.033   14.9   0.0    2.1  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   7.9e-10   3.5e-06       1      95 [.      80     171 ..      80     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 7.9e-10
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      L++G+G+G+l+ al +++   +++  Dl ++  + a  k        +++ +d+  + +++ + D v+ss++l+++  p+ ++k + + L  gG
       EGE27881.1  80 LEIGVGSGLLTDALFENFsvDTLYLNDLYDNIQTNALPKDI----DANYLIGDIGMIDLPK-TLDGVISSSALQWIYPPDVLFKRVFQTLTAGG 168
                      89*************99988899999998888855543333....3568***********9.******************************** PP

                      EEE CS
  Methyltransf_11  93 llv 95 
                      +++
       EGE27881.1 169 FFA 171
                      986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.9e-07    0.0026       2      97 .]      80     168 ..      79     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.9e-07
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      L++G G+G lt al ++++  +++  D+ ++   +a      ++++++++ gd+  +++++ + D v+ss al+++ ++d   ++k++++ L+ 
       EGE27881.1  80 LEIGVGSGLLTDALFENFSVDTLYLNDLYDNIQTNAL----PKDIDANYLIGDIGMIDLPK-TLDGVISSSALQWIYPPD--VLFKRVFQTLTA 166
                      89***************97677888887766655554....45589*********999987.*******989***99888..67******9999 PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      gG
       EGE27881.1 167 GG 168
                      98 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.2e-06    0.0097      24     163 ..      72     211 ..      34     213 .. 0.71
   2 ?   -2.8   0.0       1.1   4.8e+03      37      60 ..     229     252 ..     226     266 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.2e-06
  Methyltransf_23  24 g.....rvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg.............kfdlIvlrevlehvpd 97 
                      +     r+L+iG G+G l++ l en+   ++++ Dl+++ +            ++   +++   +             + d ++++  l ++ +
       EGE27881.1  72 QdehisRLLEIGVGSGLLTDALFENFSvdTLYLNDLYDNIQT-----------NALPKDIDA--NyligdigmidlpkTLDGVISSSALQWIYP 152
                      0455559*************997776668999****986333...........222222222..02233444444444**************** PP

  Methyltransf_23  98 ppellrqiatllkpgGylllseplaslkedrllldwlylvpagrhisffsarslkelleeaGlevv 163
                      p  l++++++ l  gG +  s++ +   +++   +++  +  gr +++ + ++l   l++aG+ ++
       EGE27881.1 153 PDVLFKRVFQTLTAGGFFAASTFVE--GNLS---EIQ--ALTGRGLRYDTPKQLMVRLNQAGFMID 211
                      ********************99943..2233...333..344567777788888888888887665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.1
  Methyltransf_23  37 levlrengfsvtgvDlspeaveia 60 
                      l++l++ g++ +g ++ ++  + +
       EGE27881.1 229 LRHLKATGVTAVGTEQACWSKQSL 252
                      667777888888888888755543 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.5e-06     0.033       1      99 []      80     170 ..      80     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.5e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      LeiG G+G l++al e+++  +++  D+  +      + l k ++    n+ + ++  +dl+  ++ D v++s++l+++ +++ +++++ + L+
       EGE27881.1  80 LEIGVGSGLLTDALFENFSVDTLYLNDLYDNIQ---TNALPKDIDA---NYLIGDIGMIDLP--KTLDGVISSSALQWIYPPDVLFKRVFQTLT 165
                      89***************9888888888888777...4444555543...3334444444443..59**************************** PP

  Methyltransf_12  95 pgGrl 99 
                       gG +
       EGE27881.1 166 AGGFF 170
                      ***75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2252.56
//
Query:       EGE27882.1  [L=234]
Description: dithiobiotin synthetase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-27   94.7   0.0    7.6e-27   94.4   0.0    1.0  1  AAA_26    AAA domain


Domain annotation for each model (and alignments):
>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   4.3e-31   7.6e-27       3     176 ..      14     197 ..      12     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 4.3e-31
      AAA_26   3 ifvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgiee.dedselikellgl....dqtyelpeplalsaplspelaarqegedidlekiv...k 93 
                 +f++g+dt++GKT+ +  ++  l ++g  v   K iqtg+ +  ed+   ++++g+    d++++l+ pl+ls p+sp+la++ +g+++d++ +    k
  EGE27882.1  14 YFISGIDTNIGKTIATGHIACQLLKNGRTVITQKLIQTGNIKiSEDIVKHRQMMGVgmlpDDKMHLTMPLILSYPASPHLASKMDGVSVDVSHLLactK 112
                 79**************************************9878888877775554223256899*************************99999999* PP

      AAA_26  94 elekdadivvVEGagglgvpitee...llnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnpenvetl 176
                 +l+++++iv++EGaggl+vp  ++    l++d +++ + pvilV +g+lg+in++ll+++al++ ++ + ++  N+ +++ + e++
  EGE27882.1 113 QLAEAYEIVLIEGAGGLMVPMMDDvkgGLMIDYIASQNYPVILVSSGRLGSINHTLLSLNALKTYGIYLYALAYNQ-ADDGDDEMI 197
                 ********************99876568*******************************************99999.455333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1794.61
//
Query:       EGE27883.1  [L=150]
Description: D-tyrosyl-tRNA(Tyr) deacylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-47  161.6   0.0    1.9e-47  161.4   0.0    1.0  1  Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase


Domain annotation for each model (and alignments):
>> Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.0     1e-51   1.9e-47       1     144 []       2     149 ..       2     149 .. 0.96

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 1e-51
                    EEEEEEEEEEEEEETTEEEEEESSEEEEEEE-BTT--HHHHHHHHHHHHH-EEEE.....ETTSSEEEETTTTT-EEEEEE-GGGGSBTSSSSS-B CS
  Tyr_Deacylase   1 raviqrvksAsvtvegevvgsigkGllvlvgvekedteedleklakkilnlrife.....deegkmnlsvkdvggevLvVsqftLyadtrkGrrps 91 
                    +a+iqrv++A+v+v gevvg+i+ G+l+++g++k+d+ +++++l++kil++rife     d+ gkm++sv+dvgg +L+VsqftL+a t+kGrrp+
     EGE27883.1   2 KALIQRVHQARVEVCGEVVGEIDGGILAYIGIGKSDDVKQAKRLVDKILSYRIFEnttdaDKLGKMDKSVADVGGGLLLVSQFTLMALTDKGRRPD 97 
                    799***********99***************************************6665557788******************************* PP

                    GTTB--HHHHHHHHHHHHHHHHHCTCTTEEE--TTS-EEEEEEEEEEEEEEEE CS
  Tyr_Deacylase  92 fhkaakpeeaeelyekfveklrerlgekvetGeFgadmkvslvndGPvtilld 144
                    f  a++p++a +l++++v  +++ ++++v+tG+Fga+m+v  +ndGP+ ++l+
     EGE27883.1  98 FGPAMPPNQAAQLFDELVCYAKQ-YHTPVATGQFGAHMQVIAHNDGPINFILE 149
                    ********************986.688***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1120.41
//
Query:       EGE27884.1  [L=157]
Description: NUDIX hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-09   37.7   0.0    3.6e-09   36.7   0.0    1.2  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0     2e-13   3.6e-09       9      66 ..       6      65 ..       2      81 .. 0.71

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 2e-13
                EEEETTSEEEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHS.EEE.EEEEEEE CS
       NUDIX  9 vllnekgevLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtG.lea.ellellg 66
                +++ e+ ++Ll rr+  p  g W+lP+G++e gEt  e A+RE+ EE+  +     l +l 
  EGE27884.1  6 LVRHEN-KILLCRRAIEPRYGyWTLPAGFMEIGETMMEGALRETIEEAAaIATdAKLYCLF 65
                455555.6*******4444447**************************9543334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1178.75
//
Query:       EGE27885.1  [L=260]
Description: NUDIX hydrolase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-08   33.1   0.0    7.6e-08   32.5   0.0    1.3  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   4.2e-12   7.6e-08       3     115 ..      78     192 ..      76     205 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.2e-12
                 EEEEEEEEEETTSE.EEEEEES..SSSTTT.EESSEEECBTTS.HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGC CS
       NUDIX   3 rravgvvllnekge.vLlvrrs..kkpfpg.WelPgGkvepgE.tpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevegel 96 
                 ++ v v +++e g  +Ll+rr+   + ++g  +l+gGk ++ + +  e A RE++EE+Gl  ++ +l+g l+   + +g     + +++ ++ +  + l
  EGE27885.1  78 HACVLVAITDEIGPrLLLTRRAsnLSSHAGeVSLVGGKRDKTDrSSYEVATREAFEEVGLLRQDSTLIGFLPMQISKKGLLV--RPVVVSMTPAIADSL 174
                 7778999*****999*******98666666588********999999************98889999997666555544433..333344555555555 PP

                 SSTSTTTEEEEEEEEHHHH CS
       NUDIX  97 epndenevsevrwvpleel 115
                     e+e++ + w +l+ l
  EGE27885.1 175 IAS-EDEIQRLFWADLTYL 192
                 555.777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1835.44
//
Query:       EGE27886.1  [L=121]
Description: hypothetical protein EA1_00845 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-25   88.0   0.0    5.2e-25   87.8   0.0    1.1  1  RsfS      Ribosomal silencing factor during starvation
  ------ inclusion threshold ------
      0.019   15.2   0.3       0.03   14.5   0.3    1.3  1  FliG_M    FliG middle domain


Domain annotation for each model (and alignments):
>> RsfS  Ribosomal silencing factor during starvation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   5.8e-29   5.2e-25       3      99 .]      13     107 ..      11     107 .. 0.95

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 5.8e-29
                 HHHHHHHTT-EEEEEEE-TTTTBSS-SEEEEEEESSHHHHHHHHHHHHHHHHHC.C-.--EEECBTTS.SEEEEE-SSEEEEEEECCCHHHHHHHHHC CS
        RsfS   3 iaealedkkaedivvidlrekkssladymviatakserhlkalaeelekklkeeaae.alsveGlnegddWvlvdlgdvvVhllteeaReeydLEelW 99 
                 +++ l+d ka++i+ +++++  +++a+ +vi++a+s+rh+kala++l    ke+ +  +l  eG  +++dW+lvdlg vvVh++t++aR++ydLE lW
  EGE27886.1  13 VTTTLDDLKAKNITTLEIEH-LTEIAERIVICEATSKRHVKALADKLGAATKEA-GLmPLGREGD-KDSDWTLVDLGAVVVHIMTPQARAFYDLEGLW 107
                 6799****************.79****************************987.6678999***.899***************************** PP

>> FliG_M  FliG middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   3.4e-06      0.03      14      66 ..       8      59 ..       6      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.4e-06
                HHHHHHHHTS-HHHHHHHHHTS-HHHHHHHHHHHHTCCTCSHHHHHHHHHHHH CS
      FliG_M 14 qtiAliLsyLdpeqAAevLseLpeelraevirriatlekvspevlkeveevLe 66
                qt Al+   Ld  +A + +  L+ e  +e++ ri+  e +s+  +k +++ L 
  EGE27886.1  8 QTLALVTTTLDDLKAKN-ITTLEIEHLTEIAERIVICEATSKRHVKALADKLG 59
                99********9777655.689***************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 905.37
//
Query:       EGE27887.1  [L=254]
Description: nicotinate nucleotide adenylyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-21   76.4   0.1    3.2e-21   76.0   0.1    1.1  1  CTP_transf_like  Cytidylyltransferase-like
  ------ inclusion threshold ------
      0.011   15.5   0.2      0.024   14.4   0.2    1.6  1  L27              L27 domain


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.1   3.5e-25   3.2e-21       1     142 [.      40     219 ..      40     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 3.5e-25
                      EEEE--TT--HHHHHHHHHHHHHSSES.....EEEEEESSTHCSST-SCSSTHHHHHHHHHHH....TTCTTEEEEEEESEHH.......HHHH CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleed.....livgvpsdeppkkkkkplasaeeRlemlela....kevdevisvdpweltr.......evlk 78 
                      ++gG+FDpiH +Hl+++  a++ ++++      + ++p++ +p k+   ++s ++R+ ml+la    +++   is+d++el         ++++
       EGE27887.1  40 YLGGSFDPIHRAHLQMVLSAHDTIHQKttdtvTVHLLPTAGNPFKN--APTSHAHRIVMLKLAitplIKKGMNISIDERELSLippiytiDTIR 131
                      689***********************99*88777788888888877..9**************99887777779999999999*******5555 PP

                      HTTTT....EEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEE.....................HTTCEEEEEEECCTTTCSHHHHHH CS
  CTP_transf_like  79 klkpd....klylvigadvledfsewkeleeilgnvklvvvsrp.....................ekqanvllkaekrtngiSstkire 142
                      +lk+      l+++ig+d+l+++++wk+++e++  vkl+ ++r                       ++++++l++++++ +iSs++ir+
       EGE27887.1 132 QLKSTypddRLIFIIGGDSLANLHQWKAYDELIYQVKLWAFDRVdttpadetvatkcttnldeflANDHTIYLDHTPIM-NISSSQIRT 219
                      555533338**********************************9******************98777777777776666.*******96 PP

>> L27  L27 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   2.7e-06     0.024      32      52 ..      52      72 ..      50      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-06
         L27 32 hlqaLlevHDrVaetvyetps 52
                hlq +l++HD+++++  +t++
  EGE27887.1 52 HLQMVLSAHDTIHQKTTDTVT 72
                9**************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1997.89
//
Query:       EGE27888.1  [L=957]
Description: excinuclease ABC, A subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-38  129.8   0.1    9.2e-38  128.7   0.1    1.7  1  UvrA_inter       UvrA interaction domain
    5.2e-34  116.9   0.0    1.7e-32  112.0   0.0    2.8  2  UvrA_DNA-bind    UvrA DNA-binding domain
    2.9e-22   79.7   0.1    1.2e-05   25.8   0.0    4.6  4  ABC_tran         ABC transporter
    1.2e-10   41.3   0.0       0.05   13.0   0.0    4.1  4  SMC_N            RecF/RecN/SMC N terminal domain
    5.8e-09   35.6   0.9    0.00048   19.8   0.6    2.7  2  AAA_29           P-loop containing region of AAA domain
    2.5e-07   31.3   0.0      0.017   15.5   0.0    2.8  2  AAA_16           AAA ATPase domain
    3.3e-06   27.4   0.2       0.19   12.0   0.1    3.6  4  AAA_22           AAA domain
    8.3e-06   25.8   0.6      0.046   13.6   0.1    2.8  2  RsgA_GTPase      RsgA GTPase
    1.5e-05   25.2   0.0      0.026   14.7   0.0    3.0  2  AAA_33           AAA domain
    1.8e-05   25.3   3.7       0.12   12.9   0.0    3.1  3  AAA_23           AAA domain
    0.00011   22.5   3.9      0.042   14.2   0.2    3.6  4  DnaJ_CXXCXGXG    DnaJ central domain
    0.00024   21.7   0.1        2.3    8.8   0.1    3.6  3  AAA_18           AAA domain
    0.00025   21.1   0.1      0.029   14.4   0.1    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
     0.0011   18.8   0.0      0.046   13.5   0.0    2.4  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0014   18.5   0.0       0.25   11.2   0.0    2.6  2  NACHT            NACHT domain
     0.0014   18.5   0.6        1.1    9.1   0.0    2.7  2  APS_kinase       Adenylylsulphate kinase
     0.0018   17.9   1.3       0.15   11.6   0.4    2.8  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0021   18.0   8.2       0.17   11.6   0.1    4.2  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0034   17.1   0.2       0.32   10.7   0.0    2.8  3  AAA_24           AAA domain
     0.0048   16.5   0.1        0.5    9.9   0.0    2.7  2  AAA_25           AAA domain
     0.0062   16.6   0.0        8.5    6.4   0.0    3.5  3  AAA_14           AAA domain
  ------ inclusion threshold ------
      0.011   15.1   0.1          4    6.7   0.0    2.7  2  ATPase           KaiC
      0.014   15.7   0.1        6.4    7.0   0.0    2.5  2  AAA_28           AAA domain
      0.015   14.5   0.1        2.7    7.2   0.0    2.3  2  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.019   13.9   0.3       0.69    8.8   0.1    2.7  3  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.022   14.7   0.0        2.2    8.1   0.0    2.4  2  ATPase_2         ATPase domain predominantly from Archaea
      0.026   14.2   0.3        5.9    6.6   0.1    3.2  3  AAA_30           AAA domain
      0.046   13.6   0.3        1.2    9.1   0.1    2.8  2  NTPase_1         NTPase
      0.079   12.0   0.4        3.5    6.6   0.3    2.3  2  T2SSE            Type II/IV secretion system protein
        0.1   12.1   0.1         10    5.6   0.1    2.4  2  AAA_7            P-loop containing dynein motor region
       0.12   12.2   0.2       0.42   10.5   0.2    2.0  1  Rad50_zn_hook    Rad50 zinc hook motif
          8    7.4   5.2        7.4    7.6   0.0    2.7  2  Cytochrome_C554  Cytochrome c554 and c-prime
        9.7    6.2   6.8         28    4.8   0.3    3.0  2  Anti-TRAP        Tryptophan RNA-binding attenuator protein in


Domain annotation for each model (and alignments):
>> UvrA_inter  UvrA interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   0.1   1.7e-40   9.2e-38       1     106 [.     132     237 ..     132     240 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 1.7e-40
  UvrA_inter   1 QsveqIvdqilkleegtkllilaPvvrerkgefkkllenlkkkGfvrvriDgeiydldedieldknkkhsievvvDrlvvkkeersrlaesvetAlklg 99 
                 Q+v+++vd i++l+ +tkl+ilaPvvrerkge+ +lle+l ++Gf+rvriDg iy++de ++l+knkkhsievvvDr++v+++  +r+aes+e Alklg
  EGE27888.1 132 QTVSEMVDGIMSLPTETKLMILAPVVRERKGEHIALLEQLPSQGFTRVRIDGVIYETDELPSLEKNKKHSIEVVVDRFKVRDDLGNRVAESLEVALKLG 230
                 9************************************************************************************************** PP

  UvrA_inter 100 eglvivs 106
                 ++++i  
  EGE27888.1 231 NDIAILY 237
                 **99976 PP

>> UvrA_DNA-bind  UvrA DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.7   3.8e+02      79     109 ..      38      68 ..      26      69 .. 0.83
   2 !  112.0   0.0   3.1e-35   1.7e-32       3     109 ..     296     402 ..     295     403 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.7
                    ......---HHHHHHHHHH-------HHHHH CS
  UvrA_DNA-bind  79 rsyektfeGvipnlerryreteSeavreele 109
                     + +  f+ +  + +rry e+ S ++r+ l+
     EGE27888.1  38 GKSSLAFDTLYAEGQRRYVESLSAYARQFLS 68 
                    56667788899999*************9876 PP

  == domain 2  score: 112.0 bits;  conditional E-value: 3.1e-35
                    ----.-----------GGG..TT-HHHHHHHHHHHTTTS------------S-THHHHH----....................---HHHHHHHHHH CS
  UvrA_DNA-bind   3 dlvvpdpslslaegAiapwsskkssyyrqlleavaehygidldtpfkeLpeeqkdilLyGsgeekikveyks.ggrkrsyektfeGvipnlerryr 97 
                    +++v +p++sl++gAi++w +k++ yy+ ll++v++h+gid+d p+++L+++++ i+L+Gsg++ki++++++ +grk++++++feG++p+lerry 
     EGE27888.1 296 ERIVTHPEKSLNQGAIHGW-DKRHAYYFGLLSTVCRHFGIDMDMPWQDLSNKHQAIILNGSGRQKIEFNFTDeRGRKTTKNTPFEGILPYLERRYT 390
                    689****************.99*************************************************99*********************** PP

                    -------HHHHH CS
  UvrA_DNA-bind  98 eteSeavreele 109
                    +t+S+ vr+el+
     EGE27888.1 391 TTTSNLVRDELA 402
                    *********997 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   9.6e-06    0.0052       1      28 [.      16      43 ..      16     223 .. 0.94
   2 !   11.6   0.0   0.00054      0.29      87     135 ..     472     519 ..     376     521 .. 0.72
   3 !   19.6   0.0   1.9e-06     0.001       1      29 [.     639     667 ..     639     712 .. 0.93
   4 !   25.8   0.0   2.3e-08   1.2e-05      85     136 ..     822     876 ..     762     877 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 9.6e-06
                EEEEEEEEETTSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  1 lknvslklkegekvaivGenGaGKStLl 28
                lkn+++++ +++ v+i+G +G+GKS+L+
  EGE27888.1 16 LKNIDVDIPRDKFVVITGLSGSGKSSLA 43
                79************************95 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00054
                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT..SSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkk..pkllllDEp 135
                  +l+k+g   l+  ++ +s+++LSgG+ qr+ la  +       +++lDEp
  EGE27888.1 472 GFLTKVG---LEYLTLARSAETLSGGEAQRIRLASQIGAGlmGVMYVLDEP 519
                 3444444...4445666778**************98765411467888888 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 1.9e-06
                 EEEEEEEEETTSEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlk 29 
                 lknv+l++  g ++ i+G +G+GKStL++
  EGE27888.1 639 LKNVHLSIPIGVMTCITGVSGSGKSTLIN 667
                 79*************************97 PP

  == domain 4  score: 25.8 bits;  conditional E-value: 2.3e-08
                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT...SSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkk...pkllllDEpt 136
                 i++ l+ l  ++l+  ++++s+++LSgG+ qrv+la+ l+k+   ++l++lDEpt
  EGE27888.1 822 IHRRLEALHEVGLDYIRLGQSATTLSGGEAQRVKLAKELAKRdtgKTLYILDEPT 876
                 666677777777888999999*******************8733368*******9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0006      0.32       6      48 ..       7      50 ..       4      78 .. 0.70
   2 !    6.4   0.0    0.0096       5.2     135     211 ..     203     564 ..     149     570 .. 0.68
   3 ?    6.0   0.2     0.013       7.1      22      42 ..     648     667 ..     635     692 .. 0.80
   4 !   13.0   0.0   9.1e-05      0.05     135     209 ..     844     918 ..     688     925 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0006
                EEESETTEECEEEEEET.TSSEEEEEESTTSSHHHHHHHHHHHC CS
                xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  6 eienFksyagktvilpf.sksftaivGpNGSGKsnlldAilFvL 48
                 i++ ++ + k++++++  ++f +i+G  GSGKs+l    l+  
  EGE27888.1  7 AIRGARTHNLKNIDVDIpRDKFVVITGLSGSGKSSLAFDTLYAE 50
                555555555555555542356**************954333555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0096
                 T.................................................................................................. CS
                 x.................................................................................................. RF
       SMC_N 135 e.................................................................................................. 135
                 e                                                                                                  
  EGE27888.1 203 Evvvdrfkvrddlgnrvaeslevalklgndiailyhmdgnpvgddeqilsakhscpvcdravseleprlfsfnnpagacpacdglgkrqyfaaerivth 301
                 455555555555555555555555555555666666666666666666666666666666666666666666666666666666666666666666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  EGE27888.1 302 pekslnqgaihgwdkrhayyfgllstvcrhfgidmdmpwqdlsnkhqaiilngsgrqkiefnftdergrkttkntpfegilpylerryttttsnlvrde 400
                 666666666666666666666666666666666666777777777777777777777777777777777777777777777777777777777777777 PP

                 .........................................................................................CS-HHHHHHH CS
                 .........................................................................................xxxxxxxxxx RF
       SMC_N 136 .........................................................................................lLSgGektLv 145
                                                                                                          +LSgGe + +
  EGE27888.1 401 laqylsdtqcnvchgvrlndiarhvrvedkaigdiihlpigeawqyyqnlkitgakgevadkifkeikerlgfltkvgleyltlarsaeTLSGGEAQRI 499
                 7777777777777777777888888888888888888888888888888888888888888888888888888888888888888888899***98876 PP

                 HHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 146 alaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgv 211
                  la    i +     +y+lDe    L ++   ++ + l + ++    ++v+ ++e+ +++ad ++ +
  EGE27888.1 500 RLASQ--IGAGLMGVMYVLDEPSIGLHQRDNDRLLSTLIQLRDLgNTVVVVEHDEDAIRQADYIIDI 564
                 66655..55666678***********9987777666555555443899999**********998876 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.013
                 TTSSEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  22 fsksftaivGpNGSGKsnlld 42 
                 +   +t+i+G  GSGKs l++
  EGE27888.1 648 IGV-MTCITGVSGSGKSTLIN 667
                 444.89***********9987 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 9.1e-05
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklv 209
                 ++LSgGe + v la  +A +    + ly+lDe    L ++ ++k+ ++l++ +++   ++vi ++ ++++ ad +v
  EGE27888.1 844 TTLSGGEAQRVKLAKELAKRDT-GKTLYILDEPTTGLHFHDIAKLLHILHTLRDRgNTVVVIEHNLDVIKTADWIV 918
                 38***************97665.678************************99988678999999999999998776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00011      0.06      16      38 ..      20      42 ..      13      55 .. 0.79
   2 !   19.8   0.6   8.8e-07   0.00048      22      57 ..     648     681 ..     637     684 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      AAA_29 16 tieidlkgatlltGpsGsGKSTl 38
                +++i ++ ++++tG sGsGKS+l
  EGE27888.1 20 DVDIPRDKFVVITGLSGSGKSSL 42
                5667666699***********98 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 8.8e-07
      AAA_29  22 kg.atlltGpsGsGKSTllDAiqalLvpakkvrfNka 57 
                  g +t +tG sGsGKSTl+   +  L+p   ++ N+a
  EGE27888.1 648 IGvMTCITGVSGSGKSTLI---NRTLMPLAATTLNNA 681
                 35599*************9...677777777777777 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.1e-05     0.017      22      69 ..      24      74 ..       9     111 .. 0.74
   2 !   12.5   0.0   0.00026      0.14      25      51 ..     650     676 ..     637     741 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.1e-05
      AAA_16 22 grpelvllsGesGvGKsslvrellralekdggif..lrgkcdql..esaipy 69
                +r   v+++G sG+GKssl+   l ++e+++ ++  l++ ++q+  +++ p 
  EGE27888.1 24 PRDKFVVITGLSGSGKSSLAFDTL-YAEGQRRYVesLSAYARQFlsQMQKPE 74
                445789**************5555.456666677779999999855555554 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00026
      AAA_16  25 elvllsGesGvGKsslvrellralekd 51 
                  ++ ++G sG+GKs+l+++ l +l ++
  EGE27888.1 650 VMTCITGVSGSGKSTLINRTLMPLAAT 676
                 67889************8877676665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00096      0.52       5      66 ..      26      91 ..      23     119 .. 0.66
   2 ?   -1.4   0.0       4.8   2.6e+03      59     110 ..     359     411 ..     354     428 .. 0.69
   3 !   12.0   0.1   0.00034      0.19       7      29 ..     651     673 ..     649     699 .. 0.84
   4 ?   -2.0   0.0       7.4     4e+03      83     123 ..     857     900 ..     836     907 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00096
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsstsskdllrellralgl 66
                ++++v+tG sG+GK+ l+   l+   ++ + e     +r  +  ++ p+  s + l  +++ + ++
  EGE27888.1 26 DKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESlsayARQFLSQMQKPEVDSIDGLSPAIAIEQKS 91
                6899*************9888888888777777775433333355555555666666666555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.8
      AAA_22  59 ellralglelkaerlsseellealeqalrarav..ielliiDE.aqhlrseeale 110
                 ++  ++++e+ +   ++   +e +  +l++r++  ++ l+ DE aq+l s+++ +
  EGE27888.1 359 KIEFNFTDERGR-KTTKNTPFEGILPYLERRYTttTSNLVRDElAQYL-SDTQCN 411
                 555566655555.56777777888888888888888888888844558.655544 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00034
      AAA_22   7 ilvvtGesGtGKTtllrrlleql 29 
                 ++++tG sG+GK+tl++r l+ l
  EGE27888.1 651 MTCITGVSGSGKSTLINRTLMPL 673
                 689**************998876 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 7.4
      AAA_22  83 eqalrarav.ielliiDEaqh.lrs....eealeeLrsllnlsrkgv 123
                 ++ l +r++ + l i+DE    l +    +++l  L++l +  r ++
  EGE27888.1 857 AKELAKRDTgKTLYILDEPTTgL-HfhdiAKLLHILHTLRD--RGNT 900
                 45555555566888888877766.43345555555555555..5444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0017      0.92      88     116 ..      14      43 ..       4      62 .. 0.76
   2 !   13.6   0.1   8.5e-05     0.046      86     120 ..     635     670 ..     610     683 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0017
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHH CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLi 116
                  ++l+++   +   k++v+ G SG GKS+L 
   EGE27888.1  14 HNLKNIDVDIPRdKFVVITGLSGSGKSSLA 43 
                  56666666665449**************95 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 8.5e-05
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinall 120
                  t+++l++++  +    ++++ G SG GKStLin+ l
   EGE27888.1 635 TGNNLKNVHLSIPIgVMTCITGVSGSGKSTLINRTL 670
                  5556666665555447899**************754 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.011       5.8       2      24 ..      29      51 ..      28     104 .. 0.76
   2 !   14.7   0.0   4.8e-05     0.026       4      57 ..     654     721 ..     651     742 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.011
      AAA_33  2 vllvGlpGsGKstlaerllkklg 24
                v++ Gl+GsGKs la   l ++g
  EGE27888.1 29 VVITGLSGSGKSSLAFDTLYAEG 51
                7889*********9966555555 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.8e-05
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdt..............lrrrlfgtdqqsktdytrvldrlyq 57 
                 + G++GsGKstl+ r l +l+a++l+  t               +++++  dq ++ + +r ++ +y 
  EGE27888.1 654 ITGVSGSGKSTLINRTLMPLAATTLNNATtlapekyekisgleHLDKMVDIDQSPIGRTPRSNPATYT 721
                 67***************9*****999888666666666666544445554444444444444444554 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00021      0.12       1      35 [.       5      42 ..       5      44 .. 0.86
   2 ?    0.0   0.0       1.9     1e+03      66     121 ..     351     405 ..     334     469 .. 0.71
   3 !   11.1   0.3   0.00074       0.4      21      37 ..     651     667 ..     640     668 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00021
      AAA_23  1 kLkienfrsfrdqeidF...skgltlItGpNGaGKTTi 35
                k+ i++ r ++ ++id     +++++ItG  G+GK+++
  EGE27888.1  5 KIAIRGARTHNLKNIDVdipRDKFVVITGLSGSGKSSL 42
                6889999999666666666999**************98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.9
      AAA_23  66 esegkvkayveltfenkdgry..........trsiererelskkkgkttkkaklelleideleqfi 121
                   +g++++ +e++f++++gr+                         ++++ +++++l  del q++
  EGE27888.1 351 ILNGSGRQKIEFNFTDERGRKttkntpfegiL-----------PYLERRYTTTTSNLVRDELAQYL 405
                 34468888999999999998654433333331...........33344444444444444444444 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00074
      AAA_23  21 ltlItGpNGaGKTTild 37 
                 +t+ItG  G+GK+T+++
  EGE27888.1 651 MTCITGVSGSGKSTLIN 667
                 79*************96 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.076        41      14      52 ..     254     289 ..     244     294 .. 0.57
   2 ?    3.8   0.2      0.14        75      15      26 ..     279     290 ..     257     304 .. 0.68
   3 ?    1.7   0.0       0.6   3.3e+02      15      23 ..     408     416 ..     397     429 .. 0.70
   4 !   14.2   0.2   7.7e-05     0.042      15      51 ..     754     786 ..     740     792 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.076
  DnaJ_CXXCXGXG  14 kktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGk 52 
                    k++C+ C+   ++ e +  l + +++    Cp+C+G Gk
     EGE27888.1 254 KHSCPVCDRAVSELEPR--L-FSFNNPAGACPACDGLGK 289
                    55677776555322222..2.122344567888888776 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.14
  DnaJ_CXXCXGXG  15 ktCktCkGsGvv 26 
                      C++C+G G+ 
     EGE27888.1 279 GACPACDGLGKR 290
                    358888887743 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.6
  DnaJ_CXXCXGXG  15 ktCktCkGs 23 
                    ++C+ C+G 
     EGE27888.1 408 TQCNVCHGV 416
                    456666664 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 7.7e-05
  DnaJ_CXXCXGXG  15 ktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtG 51 
                     +C+ C+G G +++e++ +      +  +C+ C+G+ 
     EGE27888.1 754 GRCEVCQGDGLIKVEMH-F---LPDMYVPCDVCHGKR 786
                    47********6655553.4...445668*******86 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0093         5       1      15 [.      29      43 ..      29      68 .. 0.91
   2 ?   -0.4   0.0       2.9   1.6e+03      13      39 ..     400     429 ..     393     477 .. 0.72
   3 !    8.8   0.1    0.0043       2.3       2      16 ..     653     667 ..     653     689 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0093
      AAA_18  1 IlltGtpGvGKttla 15
                +++tG +G+GK++la
  EGE27888.1 29 VVITGLSGSGKSSLA 43
                79***********98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.9
      AAA_18  13 tlakeLskrl.gf..gvnlrdvakenglll 39 
                 +la++Ls+   ++  gv+l+d+a++ + ++
  EGE27888.1 400 ELAQYLSDTQcNVchGVRLNDIARHVRVED 429
                 68999999975669*999999998766555 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0043
      AAA_18   2 lltGtpGvGKttlak 16 
                 ++tG++G+GK+tl +
  EGE27888.1 653 CITGVSGSGKSTLIN 667
                 79**********975 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.11        62       2      15 ..      29      42 ..      28      62 .. 0.89
   2 !   14.4   0.1   5.4e-05     0.029       3      40 ..     653     690 ..     651     706 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.11
                EEEEESTTSSHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStL 15
                v+i G + +GKS+L
  EGE27888.1 29 VVITGLSGSGKSSL 42
                89***********9 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.4e-05
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtTrdinegr 40 
                 +i G + +GKStLin+ +   a ++  + tT+ +++++
  EGE27888.1 653 CITGVSGSGKSTLINRTLMPLAATTLNNATTLAPEKYE 690
                 799****************999999999****996654 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.16        89       2      47 ..      30      75 ..      29      92 .. 0.63
   2 !   13.5   0.0   8.4e-05     0.046       2      36 ..     653     686 ..     652     701 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.16
  Viral_helicase1  2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegk.pklpnlsv 47
                     v+ G  G+GKS+l  + l  +   + ++++  ++ +++ ++ ++++v
       EGE27888.1 30 VITGLSGSGKSSLAFDTLYAE-GQRRYVESLSAYARQFlSQMQKPEV 75
                     89**********987777663.2233444455555554544455444 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 8.4e-05
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaellt 36 
                       + Gv G+GKStli + l + l  t+ ++++ l+ 
       EGE27888.1 653 CITGVSGSGKSTLINRTLMP-LAATTLNNATTLAP 686
                      589***************88.66666666666654 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.045        24       3      18 ..      29      44 ..      27     182 .. 0.83
   2 !   11.2   0.0   0.00046      0.25       3      32 ..     652     681 ..     650     686 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.045
                EEEEC-TTTCHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlq 18
                v+++G +GsGK+ L+ 
  EGE27888.1 29 VVITGLSGSGKSSLAF 44
                89***********984 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00046
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqg 32 
                  +++G +GsGK+tL+ +  + +a+ +l++ 
  EGE27888.1 652 TCITGVSGSGKSTLINRTLMPLAATTLNNA 681
                 69***************9999999998875 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0021       1.1       4      21 ..      28      45 ..      25      59 .. 0.80
   2 ?    6.9   0.1      0.01       5.4       3      26 ..     650     673 ..     648     686 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0021
                EEEEESSTTSSHHHHHHH CS
  APS_kinase  4 vvwltGlsgsGKstiana 21
                 v +tGlsgsGKs++a+ 
  EGE27888.1 28 FVVITGLSGSGKSSLAFD 45
                6889***********974 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.01
                 EEEEEESSTTSSHHHHHHHHHHHH CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkL 26 
                 v+  +tG+sgsGKst+ n+    L
  EGE27888.1 650 VMTCITGVSGSGKSTLINRTLMPL 673
                 66789**********987765555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.059        32       3      23 ..      29      49 ..      27      56 .. 0.78
   2 !   11.6   0.4   0.00028      0.15       2      21 ..     651     670 ..     650     685 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.059
                EEEEESTTCCHHHHHHHHHCT CS
        cobW  3 tvltGflGsGKTtLlnhllen 23
                +v+tG  GsGK++L   +l  
  EGE27888.1 29 VVITGLSGSGKSSLAFDTLYA 49
                79***********98777744 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00028
                 EEEEEESTTCCHHHHHHHHH CS
        cobW   2 vtvltGflGsGKTtLlnhll 21 
                 +t +tG  GsGK+tL+n++l
  EGE27888.1 651 MTCITGVSGSGKSTLINRTL 670
                 689***************98 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.19     1e+02       1      15 [.      28      42 ..      28      48 .. 0.93
   2 ?    0.9   0.0      0.58   3.1e+02     259     281 ..     512     538 ..     447     547 .. 0.78
   3 ?    4.4   0.6     0.052        28       1      16 [.     651     666 ..     651     667 .. 0.93
   4 !   11.6   0.1   0.00032      0.17     244     295 ..     853     904 ..     820     912 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.19
      AAA_21  1 lnvliGpNgsGKSnL 15
                + v++G  gsGKS+L
  EGE27888.1 28 FVVITGLSGSGKSSL 42
                689**********98 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.58
      AAA_21 259 sllliDEpEngLHP....kllrrllel 281
                   +++DEp  gLH     +ll++l++l
  EGE27888.1 512 VMYVLDEPSIGLHQrdndRLLSTLIQL 538
                 5789*********98888888888875 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.052
      AAA_21   1 lnvliGpNgsGKSnLL 16 
                 +++++G  gsGKS+L+
  EGE27888.1 651 MTCITGVSGSGKSTLI 666
                 699************8 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00032
      AAA_21 244 llalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvilt 295
                   +l+  l+ ++   +l+++DEp +gLH + +++ll +l  l+++g  v++ 
  EGE27888.1 853 RVKLAKELAKRDTGKTLYILDEPTTGLHFHDIAKLLHILHTLRDRGNTVVVI 904
                 446777777777777**************88888887776666677777776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.11        61       5      20 ..      29      44 ..      25      53 .. 0.87
   2 ?   -2.9   0.0       8.9   4.8e+03     111     132 ..     531     552 ..     526     555 .. 0.77
   3 !   10.7   0.0   0.00059      0.32       3      60 ..     650     714 ..     648     737 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.11
      AAA_24  5 iliyGpsgiGKTtlak 20
                ++i+G sg+GK++la 
  EGE27888.1 29 VVITGLSGSGKSSLAF 44
                89***********996 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.9
      AAA_24 111 frrllkklqelrknvifiahek 132
                 + ++l +l++l+++v+++ h +
  EGE27888.1 531 LLSTLIQLRDLGNTVVVVEHDE 552
                 5566677888888**9999965 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00059
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel........a 60 
                 ++ +i+G sg+GK+tl+++    pl   t + +  l + k+++i+++e + + v+ +        +
  EGE27888.1 650 VMTCITGVSGSGKSTLINRT-LMPLAATTLNNATTLAPEKYEKISGLEHLDKMVDIDqspigrtpR 714
                 6789**************99.777777777777788888888888777766666655555665553 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00091       0.5      26      54 ..      19      47 ..       5      52 .. 0.84
   2 ?    3.3   0.1     0.095        51      26      50 ..     642     666 ..     630     683 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00091
      AAA_25 26 vkgllpagelallaGapgtGKttlaldla 54
                ++  +p++++++++G +g+GK+ la d  
  EGE27888.1 19 IDVDIPRDKFVVITGLSGSGKSSLAFDTL 47
                55568********************9876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.095
      AAA_25  26 vkgllpagelallaGapgtGKttla 50 
                 v+  +p g  + ++G +g+GK+tl 
  EGE27888.1 642 VHLSIPIGVMTCITGVSGSGKSTLI 666
                 5566888999*************96 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.016       8.5       2      27 ..      26      51 ..      25      80 .. 0.82
   2 ?    5.2   0.0     0.038        21       5      24 ..     652     671 ..     649     703 .. 0.80
   3 ?   -0.5   0.0       2.2   1.2e+03      53      76 ..     857     878 ..     827     905 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.016
      AAA_14  2 rkilvitGaRrvGKTtllkqlikell 27
                +k +vitG+  +GK+ l+++ ++ + 
  EGE27888.1 26 DKFVVITGLSGSGKSSLAFDTLYAEG 51
                5899**************99887655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.038
      AAA_14   5 lvitGaRrvGKTtllkqlik 24 
                  +itG+  +GK+tl+++ + 
  EGE27888.1 652 TCITGVSGSGKSTLINRTLM 671
                 68************998764 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.2
      AAA_14  53 lelileklkeekktylflDEiqev 76 
                  +++ ++  + +kt+ +lDE    
  EGE27888.1 857 AKELAKR--DTGKTLYILDEPTTG 878
                 3333333..258999999996554 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0073         4      16      42 ..      23      49 ..      15     109 .. 0.89
   2 ?    5.3   0.1     0.021        11      16      36 ..     646     666 ..     639     676 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0073
      ATPase 16 ipegrvvlitGepGtGKtifalqFlik 42
                ip+++ v itG +G+GK+ +a   l+ 
  EGE27888.1 23 IPRDKFVVITGLSGSGKSSLAFDTLYA 49
                89****************999776664 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.021
      ATPase  16 ipegrvvlitGepGtGKtifa 36 
                 ip g ++ itG++G+GK+++ 
  EGE27888.1 646 IPIGVMTCITGVSGSGKSTLI 666
                 7888999***********985 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.012       6.4       2      47 ..      29      79 ..      28      97 .. 0.70
   2 ?    6.0   0.2     0.024        13       3      18 ..     653     668 ..     651     697 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.012
      AAA_28  2 ivitGgestGKTtll.eaLaar....gypvvpEaareileeklakgedalp 47
                +vitG +++GK++l+   L a+     ++ +  +ar++l++ ++ + d ++
  EGE27888.1 29 VVITGLSGSGKSSLAfDTLYAEgqrrYVESLSAYARQFLSQMQKPEVDSID 79
                8*************9778886632223445588999999888877776555 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.024
      AAA_28   3 vitGgestGKTtllea 18 
                 +itG +++GK+tl+++
  EGE27888.1 653 CITGVSGSGKSTLINR 668
                 8************975 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0049       2.7       2      25 ..      27      50 ..      26      93 .. 0.79
   2 ?    5.0   0.1     0.023        12       3      26 ..     651     674 ..     649     692 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0049
     DUF2075  2 avvlVtGvaGtGKtvvllnllael 25
                + v++tG +G+GK+ +++  l++ 
  EGE27888.1 27 KFVVITGLSGSGKSSLAFDTLYAE 50
                579****************99986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.023
     DUF2075   3 vvlVtGvaGtGKtvvllnllaele 26 
                 +  +tGv+G+GK+ + ++ l  l 
  EGE27888.1 651 MTCITGVSGSGKSTLINRTLMPLA 674
                 5679**********9999887774 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.18        96      20      46 ..      17      43 ..       9      56 .. 0.77
   2 ?   -3.2   0.0       5.9   3.2e+03     207     237 ..     449     479 ..     436     486 .. 0.80
   3 ?    8.8   0.1    0.0013      0.69      33      55 ..     653     675 ..     643     684 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.18
                HHHGGG-S-SEEEEEEE-TTSSHHHHH CS
        MeaB 20 erllakaGraqvvGltGvPGaGkstlv 46
                +++  +  r + v +tG+ G+Gks l 
  EGE27888.1 17 KNIDVDIPRDKFVVITGLSGSGKSSLA 43
                55666667888999**********874 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.9
                 EEEEBCCCTBSHHHHHHHHHHHHHHHHHTTH CS
        MeaB 207 vlktsavegeGidelvdaieehrevlkktGl 237
                  lk+++ +ge  d+++++i+e   +l+k Gl
  EGE27888.1 449 NLKITGAKGEVADKIFKEIKERLGFLTKVGL 479
                 5788888999999999999999999988886 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0013
                 EEEE-TTSSHHHHHHHHHHHHHC CS
        MeaB  33 GltGvPGaGkstlvealglelrr 55 
                  +tGv G+Gkstl+++  + l++
  EGE27888.1 653 CITGVSGSGKSTLINRTLMPLAA 675
                 59*************99988865 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0041       2.2      19     111 ..      25     115 ..      12     119 .. 0.67
   2 ?    3.9   0.0     0.081        44      23      41 ..     652     670 ..     648     682 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0041
    ATPase_2  19 pneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilk.eksklvfkaiellle 111
                 ++++++i+G  gsGK++L    +    +   yv  ++a  ++++s++++   e ++ + l+ a++i+ ++++ +  +   ++++v+ ++ ll++
  EGE27888.1  25 RDKFVVITGLSGSGKSSLAFDTLYAEGQ-RRYVESLSAYARQFLSQMQKP--EVDSIDGLSPAIAIEQKSTNHNPRSTvGTITEVYDYLRLLFA 115
                 4789**************9888777644.334555555555555555555..777777777777776666666655556666777777766665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.081
    ATPase_2  23 yfiYGpegsGKtaLlkeii 41 
                   i+G  gsGK++L+++ +
  EGE27888.1 652 TCITGVSGSGKSTLINRTL 670
                 579************9865 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.13        71      18      34 ..      26      42 ..      23      65 .. 0.87
   2 ?    6.6   0.1     0.011       5.9      20      38 ..     651     669 ..     646     690 .. 0.77
   3 ?   -0.2   0.0       1.3   6.8e+02      83     121 ..     860     903 ..     828     906 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.13
      AAA_30 18 drvavltGpAGtGKtta 34
                d+++v+tG  G+GK+ +
  EGE27888.1 26 DKFVVITGLSGSGKSSL 42
                6799**********976 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
      AAA_30  20 vavltGpAGtGKttalkal 38 
                 ++++tG+ G+GK+t+++  
  EGE27888.1 651 MTCITGVSGSGKSTLINRT 669
                 789************9865 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.3
      AAA_30  83 rarlepg.tllivDEagmv....dtkqlaallkaaekagakvil 121
                  a+ ++g tl+i DE        d+++l ++l  ++++g +v++
  EGE27888.1 860 LAKRDTGkTLYILDEPTTGlhfhDIAKLLHILHTLRDRGNTVVV 903
                 23334445999999966544455666666667777777777665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.53   2.9e+02       2      16 ..      29      43 ..      28      50 .. 0.88
   2 ?    9.1   0.1    0.0022       1.2       3      24 ..     653     674 ..     651     691 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.53
                EEEE--TTSSHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlv 16
                v+iTG +G+GK+ l 
  EGE27888.1 29 VVITGLSGSGKSSLA 43
                79**********986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0022
                 EEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellk 24 
                 +iTG +G+GK+Tl+++ l  l+
  EGE27888.1 653 CITGVSGSGKSTLINRTLMPLA 674
                 69*************9987775 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.078        43     117     147 ..      15      44 ..       1      54 [. 0.71
   2 ?    6.6   0.3    0.0064       3.5     129     156 ..     649     676 ..     600     685 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.078
       T2SSE 117 kiaevlrkavrerglilvsGgTgsGKttlly 147
                 ++++ +   + + + ++++G  gsGK+ l+ 
  EGE27888.1  15 NLKN-IDVDIPRDKFVVITGLSGSGKSSLAF 44 
                 4443.4555678899************8874 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0064
       T2SSE 129 rglilvsGgTgsGKttllyallkeinks 156
                   +  ++G  gsGK+tl++  l  ++++
  EGE27888.1 649 GVMTCITGVSGSGKSTLINRTLMPLAAT 676
                 567789*************998777655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.069        37      32      63 ..      25      56 ..      13      75 .. 0.78
   2 ?    5.6   0.1     0.019        10      33      59 ..     649     675 ..     639     687 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.069
       AAA_7 32 nkkpvllvGptGtGKtviikdllkkldkekyl 63
                ++k v+++G +G+GK++++ d+l +  +++y+
  EGE27888.1 25 RDKFVVITGLSGSGKSSLAFDTLYAEGQRRYV 56
                678899************99976665555554 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.019
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldk 59 
                 +  ++++G +G+GK+++i+++l  l  
  EGE27888.1 649 GVMTCITGVSGSGKSTLINRTLMPLAA 675
                 5567899*************8877764 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00077      0.42      13      27 ..     248     262 ..     248     270 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00077
                    HHHTT-SEE-TTT-- CS
  Rad50_zn_hook  13 eelkeakgcCPlCgR 27 
                    e++ +ak++CP+C+R
     EGE27888.1 248 EQILSAKHSCPVCDR 262
                    68899*********9 PP

>> Cytochrome_C554  Cytochrome c554 and c-prime
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.014       7.4      65      84 .]     396     415 ..     388     415 .. 0.84
   2 ?   -0.8   2.5       5.5     3e+03      76      84 .]     776     784 ..     752     784 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.014
                      --SSS--GGGBSS-HHHHH- CS
  Cytochrome_C554  65 fvlkektkllagVqCesCHg 84 
                       v++e  ++l++ qC++CHg
       EGE27888.1 396 LVRDELAQYLSDTQCNVCHG 415
                      56788899***********9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 5.5
                      SS-HHHHH- CS
  Cytochrome_C554  76 gVqCesCHg 84 
                       V C++CHg
       EGE27888.1 776 YVPCDVCHG 784
                      589*****8 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2      0.09        49      12      40 ..     256     288 ..     252     299 .. 0.70
   2 ?    4.8   0.3     0.051        28      12      40 ..     755     786 ..     753     789 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.09
                 E-TTTTTT.SEETTE..........E-TTTTTSS CS
   Anti-TRAP  12 kCdaCngs.Gkiepe....eprasleCPkCsGkg 40 
                  C+ C+++  + ep     ++ a+  CP+C G g
  EGE27888.1 256 SCPVCDRAvSELEPRlfsfNNPAG-ACPACDGLG 288
                 688888873355666776533333.699999866 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.051
                 E-TTTTTTSEETTE.........E-TTTTTSS CS
   Anti-TRAP  12 kCdaCngsGkiepe...eprasleCPkCsGkg 40 
                  C+ C+g G i+ e    p   ++C  C Gk 
  EGE27888.1 755 RCEVCQGDGLIKVEmhfLPDMYVPCDVCHGKR 786
                 59999999999988666667888999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 6300.56
//
Query:       EGE27889.1  [L=236]
Description: single-strand binding protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-39  134.4   1.5    2.1e-39  133.7   1.5    1.3  1  SSB       Single-strand binding protein family
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.17   11.9   0.0    1.5  1  DUF3217   Protein of unknown function (DUF3217)


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.7   1.5   2.4e-43   2.1e-39       1     104 []       3     108 ..       3     108 .. 0.99

  Alignments for each domain:
  == domain 1  score: 133.7 bits;  conditional E-value: 2.4e-43
                 ECEEEEEEEESSS-EEEEETTSEEEEEEEEEEEEEEEE.TTCCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEECTT.SCEEEEEEEE CS
         SSB   1 vnkvilvGrlgkdpelrqtesGnavarftlatnrrfkd.qegekdeetewhrvvvfgklaevvaeylkkGslvyveGrlqtrkyedqe.gqkrysteiv 97 
                 vnkvilvG+lg+dpe+r + +G  +a++++at++r++d ++ge++e+tewhrvv+ ++laev+++yl+kGs++yveG+l+trk++d + gq+ry+tei 
  EGE27889.1   3 VNKVILVGNLGNDPEVRNFDNGGMIATVSIATSERWTDrNTGERKEHTEWHRVVFNNRLAEVASQYLRKGSQIYVEGSLRTRKWQDTQtGQERYTTEIR 101
                 7*************************************99************************************************9********** PP

                 EEEEEEE CS
         SSB  98 aeevqfl 104
                 a+++q+l
  EGE27889.1 102 ADNMQML 108
                 *****97 PP

>> DUF3217  Protein of unknown function (DUF3217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05      0.17      31      79 ..      41      90 ..       3     126 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
     DUF3217 31 rsfger.kftdyfviyankqlalelekytkevkvlsvkGvlktylekksk 79
                r  ger ++t+++ +  n++la    +y ++   + v+G+l+t+  + ++
  EGE27889.1 41 RNTGERkEHTEWHRVVFNNRLAEVASQYLRKGSQIYVEGSLRTRKWQDTQ 90
                55666525999999999*****55568999*************9876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1837.28
//
Query:       EGE27890.1  [L=383]
Description: putative glutathionylspermidine synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.1e-135  450.0   0.0     8e-135  449.8   0.0    1.0  1  GSP_synth  Glutathionylspermidine synthase preATP-grasp


Domain annotation for each model (and alignments):
>> GSP_synth  Glutathionylspermidine synthase preATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.8   0.0  4.5e-139    8e-135       1     378 []      12     382 ..      12     382 .. 0.96

  Alignments for each domain:
  == domain 1  score: 449.8 bits;  conditional E-value: 4.5e-139
   GSP_synth   1 weekleeegftfhtedgepYwdesaayaftlaeveeleeateelhqmcleaaeevveeeellarlgipeellelireSwerrepsLygRfDlaydGkgp 99 
                 w+++++++gf++h+ dg+ Yw+e+a+y ft+++++ le+at++lh+m+++a+++vv++  ++arlgi++ +++ i++S+ r+ psLygRfDl++dG +p
  EGE27890.1  12 WQSEMARIGFNYHSIDGN-YWQEDACYVFTESQIDLLEDATNTLHHMYVQAVAHVVKTG-DYARLGIDDIAAKQIEDSFGRQAPSLYGRFDLCFDGINP 108
                 999***********9765.***************************************9.*************************************** PP

   GSP_synth 100 akllEyNaDTPTsLlEaavvqwlwledqreagelkeeadqfnslhealverfkeltleeekeklhfsavedseEDratvayLqdtakeagleteflpie 198
                 +kl+EyNaDTPT+L+Ea+v+qw+wl++q   g + + adqfns+he+l+ +f++l+    +++l+++av+ds ED +t++yLqd+a +agl+t++++i 
  EGE27890.1 109 PKLYEYNADTPTALFEASVAQWYWLQAQ---GGILRGADQFNSIHERLLVEFESLKPMLGHDTLYLTAVSDSIEDLTTTQYLQDVAIQAGLQTDYIDIG 204
                 ***************************5...899999*****************75568899************************************* PP

   GSP_synth 199 digldeeegrfvdadgrkiellfkLyPwEwlvedefgeelaeallevrllePawklllsnKalLallWelypghpnLLpayfeedeeeekgkkyvkKpl 297
                 +ig+  ++g+f+d++++ i+ lfkLyPwEwl+++efg+++a+++  ++l+ePa+kll+snKalL++lWe++p+hpnLL a+++ ++    ++++vkKp+
  EGE27890.1 205 NIGYCMSDGQFTDLNDNIIHHLFKLYPWEWLLAEEFGQHIASSN--IHLIEPAYKLLMSNKALLTVLWEMFPNHPNLLAASLNPND---ISTNVVKKPF 298
                 *****99***********************************99..************************************5444...679******* PP

   GSP_synth 298 fgREGanveiveegsevaeekegeygeekviyQeyaelpkf.....dgsypvlgswlvgdeaaGlgiRedrglitdnlsrFvPhli 378
                 f+REGan+++++++++ +++  g+yg+e+++yQe  +lpkf     ++ ++v+gsw++g++aaG+giRed++lit+++s FvPh +
  EGE27890.1 299 FSREGANISLTHANQTLSTH--GQYGQEGYVYQESKPLPKFsnnqgQDVFAVIGSWIIGHSAAGIGIREDSTLITKDTSLFVPHAF 382
                 ***********988888665..*******************77644444***********************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2861.51
//
Query:       EGE27891.1  [L=181]
Description: hypothetical protein EA1_00870 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00016   21.5  11.8    0.00019   21.2  11.8    1.1  1  SARAF         SOCE-associated regulatory factor of calcium ho
     0.0025   16.3   6.8      0.003   16.0   6.8    1.1  1  DUF3292       Protein of unknown function (DUF3292)
  ------ inclusion threshold ------
       0.26   12.4   9.1       0.32   12.1   0.3    2.9  2  DUF5320       Family of unknown function (DUF5320)
       0.44    9.9  22.3       0.58    9.5  22.3    1.1  1  DUF4407       Domain of unknown function (DUF4407)
       0.47   10.4   5.8        0.3   11.0   1.0    2.0  2  DinB          DinB family
       0.66    9.0   8.7        0.8    8.7   8.7    1.1  1  BAF1_ABF1     BAF1 / ABF1 chromatin reorganising factor
       0.91    8.5   3.3        1.1    8.2   3.3    1.1  1  SLC12         Solute carrier family 12
        2.2    8.1   5.3        3.4    7.5   5.3    1.4  1  Folliculin    Vesicle coat protein involved in Golgi to plasm
        3.5    5.5   4.0        5.6    4.8   4.0    1.2  1  Dicty_REP     Dictyostelium (Slime Mold) REP protein
        3.6    7.5  21.7        5.3    6.9  21.7    1.2  1  TFIIA         Transcription factor IIA, alpha/beta subunit
        3.8    5.5   6.8        4.9    5.2   6.8    1.0  1  Hid1          High-temperature-induced dauer-formation protei
        6.5    7.3  12.1       0.52   10.8   2.5    2.2  2  DUF4140       N-terminal domain of unknown function (DUF4140)
        7.8    6.8  10.5       0.17   12.1   2.7    1.9  2  Spc24         Spc24 subunit of Ndc80
        8.6    5.1   5.3         13    4.5   5.3    1.2  1  DUF3537       Protein of unknown function (DUF3537)
        9.6    4.8  12.7         13    4.5  12.7    1.1  1  Presenilin    Presenilin


Domain annotation for each model (and alignments):
>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2  11.8   1.6e-07   0.00019     193     328 ..      43     173 ..       4     175 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.6e-07
       SARAF 193 ggrrgeggggggggggpgseeeqddpPppy......................sltksqkpssssessqqgeqeeswrpGFWtGlatGaaaGYlagrrra 269
                 +++                       P  y                      +++ ++++   s++++  +++ s+ +    G+a+GaaaGY+a++ + 
  EGE27891.1  43 QQE-----------------------PLQYtnaeaqalqeqaaalqaqaaelEMQAQEAQADASHETKATSADGSGVGSLLAGAAAGAAAGYVASKVAG 118
                 111.......................1111222222222222233334444434444444444445666667888999***************998888 PP

       SARAF 270 qneeteeeekeksssWgsssegsssssssssssssassssssssssssstrestGFGgT 328
                 ++ +t +++++     ++++++++  ++++++++s+++s +++++ + + +++ GFG T
  EGE27891.1 119 NRAATAQASQTA----QTPTTTQQPAQNNQQATNSNRQSLAQATQDNRAGTTRQGFGAT 173
                 766666543332....233333333444444444445555555666667788899*998 PP

>> DUF3292  Protein of unknown function (DUF3292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   6.8   2.5e-06     0.003     404     524 ..      29     144 ..      14     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.5e-06
     DUF3292 404 kaPlPpppsskekppekpaelkdeelraeagedepldaseeeleeaiepdeekakekeeekeeekekkkkkkkgskilgllkgttkggvktalavdkvk 502
                  +P  p   ++++++++p++ ++ e++a +++ ++l+a+ +ele ++++ +  a++++++     ++ + ++ gs + g   g+++g v +++a +++ 
  EGE27891.1  29 CSPQSPTVAEHQPQQQEPLQYTNAEAQALQEQAAALQAQAAELEMQAQEAQADASHETKA-----TSADGSGVGSLLAGAAAGAAAGYVASKVAGNRAA 122
                 4566666666788888899999999999788889**********9999888865555554.....444567899999********************** PP

     DUF3292 503 akvgsehaknrlgvlkkkgkkk 524
                 ++  s+ a++  +  ++ ++++
  EGE27891.1 123 TAQASQTAQTPTTTQQPAQNNQ 144
                 9999999998877776654333 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   0.00027      0.32      61      96 ..      35      75 ..       6      78 .. 0.60
   2 ?    4.2   1.7     0.074        89      12      87 ..     101     156 ..      83     167 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00027
     DUF5320 61 la.....aaetaeaskeeekelLeeqaeaLeeeleaikkrl 96
                ++     +++   + +++e+++L+eqa+aL+++ ++++ + 
  EGE27891.1 35 TVaehqpQQQEPLQYTNAEAQALQEQAAALQAQAAELEMQA 75
                22222234445555667778888888888888877777665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.074
     DUF5320  12 lGpmtGrglGyCagadapgyansagfGrgrggrglgrgfgrrrraggarla..aaetaeaskeeekelLeeqaeaLee 87 
                 +G+  G ++                      g+   +  g+r  + +a+ +  +++t+++ +++++++ +++ ++L +
  EGE27891.1 101 AGAAAGAAA----------------------GYVASKVAGNRAATAQASQTaqTPTTTQQPAQNNQQATNSNRQSLAQ 156
                 222222222......................33333333332222222222343445555555555555555555554 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  22.3   0.00048      0.58     130     235 ..      46     161 ..      32     177 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00048
     DUF4407 130 a...ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...........gtgttgvaGkgpaake.....kkaqldaaqaelaelkakldat 209
                      +ae ++l++q aalqa+ +++e ++++++a+a  e++ t+           g          + a +     k a + aa+a+  +  ++   t
  EGE27891.1  46 PlqyTNAEAQALQEQAAALQAQAAELEMQAQEAQADASHETKATSadgsgvgsllaG--------AAAGAAAgyvasKVAGNRAATAQASQTAQT-PTT 135
                 13336789999999999*********************9999999887766555432........222222222222222222222222222222.123 PP

     DUF4407 210 arlaalraelaeleaerakeraasqa 235
                 ++++a+++++a+  ++++ ++a+++ 
  EGE27891.1 136 TQQPAQNNQQATNSNRQSLAQATQDN 161
                 33333333333322222222222222 PP

>> DinB  DinB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.0   0.00025       0.3      65     115 ..      32      82 ..      14      92 .. 0.79
   2 ?    2.0   0.3      0.14   1.7e+02      70     103 ..     127     160 ..     112     177 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
                 ..SSSGGGT---------HHHHHHHHHHHHHHHHCT--HHHHHSEE----- CS
        DinB  65 eegapavddqterkeleeldalrealderliafldqltdleretlldrada 115
                 ++ + a ++ ++++ l++ +a  +al+e+++a+++q ++le + +  +ada
  EGE27891.1  32 QSPTVAEHQPQQQEPLQYTNAEAQALQEQAAALQAQAAELEMQAQEAQADA 82 
                 556778899999***************************655555444444 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.14
                 GGGT---------HHHHHHHHHHHHHHHHCT--H CS
        DinB  70 avddqterkeleeldalrealderliafldqltd 103
                 + + qt++ +++ ++  ++a +   ++++++ +d
  EGE27891.1 127 SQTAQTPTTTQQPAQNNQQATNSNRQSLAQATQD 160
                 3444555555555555555555555555555555 PP

>> BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   8.7   0.00067       0.8      97     209 ..      44     160 ..      16     172 .. 0.32

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00067
   BAF1_ABF1  97 dkenkkektees.eeatkasaeaeteslkkdeseenketqkkkeada.adedddvsaaiaaAVaava.....dsknakeekkeekakkeedaeentnkn 188
                 ++  + ++ e +  + ++a  +a++++l+ +++e+  +++ ++e++a +++   v   +a A a +a     ++ +++ ++  +++++++ ++++t+++
  EGE27891.1  44 QEPLQYTNAEAQaLQEQAAALQAQAAELEMQAQEA--QADASHETKAtSADGSGVGSLLAGAAAGAAagyvaSKVAGNRAA--TAQASQTAQTPTTTQQ 138
                 22222222222202222222222222222222222..22222222220233344554444443333312222222222222..2222222222222222 PP

   BAF1_ABF1 189 ennd..asisqkknslsedaled 209
                   ++  + ++++ +sl++++ +d
  EGE27891.1 139 PAQNnqQATNSNRQSLAQAT-QD 160
                 22220022222222222222.22 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.3   0.00095       1.1     150     217 ..      51     152 ..       9     170 .. 0.35

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00095
       SLC12 150 keeeekkkakkkklleekskekeekekleekdsnlslseekk....................................eeekekkkekkkkkekkeklk 212
                 +  e+++ +++  +l+ ++ e e + +  ++d +++++ ++                                     + ++++ +++++ ++++++++
  EGE27891.1  51 N-AEAQALQEQAAALQAQAAELEMQAQEAQADASHETKATSAdgsgvgsllagaaagaaagyvaskvagnraataqasQ-TAQTPTTTQQPAQNNQQAT 147
                 1.11111111111222122221212122222222222221113455666666666666666666554444333332211.1111111111111111111 PP

       SLC12 213 kkeks 217
                 +++++
  EGE27891.1 148 NSNRQ 152
                 11111 PP

>> Folliculin  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.3    0.0029       3.4      89     167 ..      54     160 ..      36     167 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0029
  Folliculin  89 veafeklaaeiqalaeaelereskeeeassaassssa...............................lkadgsglsrregssfslskekylrrskskl 156
                 ++a+++ aa +qa+a +   ++++ ++ +s+++++++                                   +++ +++++ + +++++  ++++ ++ 
  EGE27891.1  54 AQALQEQAAALQAQAAELEMQAQEAQADASHETKATSadgsgvgsllagaaagaaagyvaskvagnraA--TAQASQTAQTPTTTQQPA-QNNQQATNS 149
                 578888888898887665544444333333333333379999******************998886431..222222222222222233.333444445 PP

  Folliculin 157 karsLaelvgd 167
                 + +sLa+ ++d
  EGE27891.1 150 NRQSLAQATQD 160
                 57888887776 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   4.0    0.0047       5.6     250     294 ..     119     163 ..     107     175 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0047
   Dicty_REP 250 skeknkttttttttttttsqartrkrkaidddklsenqakekkkn 294
                 ++  +++  +t++t ttt+q+ ++ ++a++ ++ s +qa ++++ 
  EGE27891.1 119 NRAATAQASQTAQTPTTTQQPAQNNQQATNSNRQSLAQATQDNRA 163
                 667889999******************999888887666655443 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  21.7    0.0044       5.3      61     189 ..      37     158 ..      19     176 .. 0.28

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0044
       TFIIA  61 vlqlpqslkqalqasaaaa..sqapastsqslpslvipagksvqsltanssaataatfslpakleppvqipagvtlqtasg.qlykvnv.....qasga 151
                 + ++pq++++ + ++a+a+  + + a+ ++++++l ++a+    + +a  s++t+at +  +++     + ag     a g  + k  v     ++ +a
  EGE27891.1  37 AEHQPQQQEPLQYTNAEAQalQEQAAALQAQAAELEMQAQ----EAQADASHETKATSADGSGVGS---LLAGAAAGAAAGyVASK--VagnraATAQA 126
                 2222222222222111111011111111111111111111....1111222222222222222222...33333333333321111..11111223333 PP

       TFIIA 152 qqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqala 189
                 +q a+ p  ++    q+++ +++++++++q  ++++++
  EGE27891.1 127 SQTAQTPTTTQ----QPAQNNQQATNSNRQ--SLAQAT 158
                 33333332222....222212222222211..111111 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.8    0.0041       4.9     545     674 ..      35     159 ..      32     175 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0041
        Hid1 545 nviqkqfkgnrnLvYsilrkrkvfealrnltlesaseeiersnesarldsideeeeenssessrieesrsesrspslsevpelksslaitddeskaere 643
                 +v+++q+++ + L Y+   ++   e+ ++l+ ++a+ e++ ++    ++++++e++ +s + s + +  ++   +  ++   + s++a +   +++ ++
  EGE27891.1  35 TVAEHQPQQQEPLQYTNAEAQALQEQAAALQAQAAELEMQAQEA---QADASHETKATSADGSGVGSLLAG--AAAGAAAGYVASKVAGNRAATAQASQ 128
                 57888899999999988888888888888887777744444433...344444444444555555554444..23335555666677766666666666 PP

        Hid1 644 ksatessssqavsqlremsekarakesaest 674
                 + +t++ ++q ++++++ ++++r+   +  +
  EGE27891.1 129 TAQTPTTTQQPAQNNQQATNSNRQSLAQATQ 159
                 6666666555555344443333333333222 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.5   0.00044      0.52      52      94 ..      39      81 ..      22      84 .. 0.72
   2 ?    1.7   2.2      0.29   3.5e+02      40      83 ..     115     160 ..     113     169 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00044
     DUF4140 52 vqvervpnreaeee....elkalraeleeledelaaledelaaaear 94
                 q ++++      +    e +al+++  +l+++ a+le +++ a+a 
  EGE27891.1 39 HQPQQQEPL----QytnaEAQALQEQAAALQAQAAELEMQAQEAQAD 81
                333333444....2455489999999999999999999999999875 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.29
     DUF4140  40 rVegagaatildvqvervpnreaeee..elkalraeleeledelaa 83 
                 +V g+ aat +  q++++p ++++ +    +a+++  ++l ++ ++
  EGE27891.1 115 KVAGNRAATAQASQTAQTPTTTQQPAqnNQQATNSNRQSLAQATQD 160
                 5778888899988888877777766543244444444444444333 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.7   0.00014      0.17      13      48 ..      47      82 ..      38      96 .. 0.78
   2 ?   -1.0   1.0       1.8   2.1e+03      17      34 ..     137     154 ..     119     168 .. 0.43

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
       Spc24 13 lsdleselesleselaelkeeleeleeesee...keser 48
                l+ +++e+++l+++ a l+++ +ele++ +e   +   +
  EGE27891.1 47 LQYTNAEAQALQEQAAALQAQAAELEMQAQEaqaD---A 82
                6778999***********************95331...2 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.8
       Spc24  17 eselesleselaelkeel 34 
                 ++ +++ ++  ++ ++ l
  EGE27891.1 137 QQPAQNNQQATNSNRQSL 154
                 222222222222222222 PP

>> DUF3537  Protein of unknown function (DUF3537)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   5.3     0.011        13     286     377 ..      62     170 ..      50     172 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.011
     DUF3537 286 qaitslaskWhalatiesaeaekeepsssaaeleaaksassl........................dsseesseesdldstklvsvqanstisfqkrqa 360
                  a+ + a++  + a  ++a+a++e++ +sa  +        +                         +++++s++ ++ +t   ++q+n++++  +rq+
  EGE27891.1  62 AALQAQAAELEMQAQEAQADASHETKATSADGSG-------VgsllagaaagaaagyvaskvagnrAATAQASQTAQTPTTTQQPAQNNQQATNSNRQS 153
                 4444444444444444444443333333333322.......1333444456777788877777644333334444444455567777778999****** PP

     DUF3537 361 lvtYLennraGitvfGf 377
                 l +  + nraG t  Gf
  EGE27891.1 154 LAQATQDNRAGTTRQGF 170
                 ************98888 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  12.7     0.011        13     230     327 ..      52     171 ..      32     172 .. 0.39

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.011
  Presenilin 230 aevaeseeeeeaekkkeeasesskeeeseeesseksaqsse............................seeeseeesseaessaeesseekeseesse 300
                 ae+++ +e+++a ++++++ e +++e++ + s+e++a   +                                +++++++a+++a++++++++ +++++
  EGE27891.1  52 AEAQALQEQAAALQAQAAELEMQAQEAQADASHETKA---TsadgsgvgsllagaaagaaagyvaskvaG---NRAATAQASQTAQTPTTTQQPAQNNQ 144
                 2222222222222222222222222222222222222...133578899999999999**9999764431...22222222222222222222222222 PP

  Presenilin 301 sseeeeeeeeeeeeseseergvkLGLG 327
                 +++++++++ ++ +++++ ++ + G+G
  EGE27891.1 145 QATNSNRQSLAQATQDNRAGTTRQGFG 171
                 222222222222222233335666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2621  (0.146188); expected 358.6 (0.02)
Passed bias filter:                      715  (0.0398795); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 1314.33
//
Query:       EGE27892.1  [L=269]
Description: heme exporter protein CcmC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-30  105.6  21.1      3e-30  105.6  21.1    1.6  2  Cytochrom_C_asm  Cytochrome C assembly protein
  ------ inclusion threshold ------
      0.012   15.7   0.4      0.012   15.7   0.4    3.1  4  CbtB             Probable cobalt transporter subunit (CbtB)


Domain annotation for each model (and alignments):
>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6  21.1   3.4e-34     3e-30      41     214 .]      48     204 ..      21     204 .. 0.87
   2 ?   -1.9   0.3      0.26   2.4e+03      78      93 ..     225     240 ..     209     261 .. 0.55

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 3.4e-34
  Cytochrom_C_asm  41 aalillgfalflllaelqesadlnpalqspilmiHvplallsYatliigallsialliierqlkkkkklklsanlkllkqldrlsyriiliGfv 134
                      +a++llg+   l+ a    + d+ ++++++i++iHvp+a l+++++   ++l +++l                 ++++k+++ ++++i++iGf+
       EGE27892.1  48 VAALLLGTG--LVWALGFAPPDYLQGNSYRIIFIHVPTASLAMSIYFALSVLGVIFL-----------------VWKIKTANIVAQAIAPIGFI 122
                      222222222..4466667799999*********************************.................******************** PP

  Cytochrom_C_asm 135 lltigiilGsvWaeeaWGsywsWDpketaslitWlvfaallhsri..ek.gwrgkkaailailgflllllayfgvrllgeglh 214
                      +  i++++Gs+Wa+++WG+yw+WD+++t+ li+ +++a++++++   e  + rgk+aail+i+g+++l++++++v++++ +lh
       EGE27892.1 123 FCVISLLTGSIWAKPTWGTYWVWDARLTSMLILAFLYAGVIALFSafESsSNRGKAAAILSIVGAVNLPIIKYSVEWWN-TLH 204
                      ***************************************99999888777****************************9.787 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.26
  Cytochrom_C_asm  78 lallsYatliigalls 93 
                      l+++ ++++ ++a+++
       EGE27892.1 225 LLIMILGMYFMVAAIA 240
                      3333333333333322 PP

>> CbtB  Probable cobalt transporter subunit (CbtB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.4   1.3e-06     0.012      11      33 ..      45      67 ..      42      71 .. 0.89
   2 ?   -3.1   0.3         1     9e+03      15      22 ..      88      95 ..      81     103 .. 0.44
   3 ?   -0.1   1.4      0.11     1e+03      12      31 ..     152     171 ..     146     179 .. 0.84
   4 ?   -2.5   0.0      0.64   5.8e+03       6      19 ..     177     190 ..     172     192 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-06
        CbtB 11 lqlvaAllLGlllvylvgfsqaa 33
                l++vaAllLG++lv+++gf++ +
  EGE27892.1 45 LATVAALLLGTGLVWALGFAPPD 67
                789****************9876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
        CbtB 15 aAllLGll 22
                +++ ++l 
  EGE27892.1 88 MSIYFALS 95
                33333333 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.11
        CbtB  12 qlvaAllLGlllvylvgfsq 31 
                  l++A+l + +++ ++ f  
  EGE27892.1 152 MLILAFLYAGVIALFSAFES 171
                 68999999999999999976 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 0.64
        CbtB   6 saqrllqlvaAllL 19 
                 +a+++l +v+A+ L
  EGE27892.1 177 KAAAILSIVGAVNL 190
                 56778888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2206.88
//
Query:       EGE27893.1  [L=66]
Description: heme exporter protein D [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-14   52.0   0.2    5.4e-14   52.0   0.2    1.3  2  CcmD      Heme exporter protein D (CcmD)
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.016   15.4   0.0    1.1  1  Pox_A14   Poxvirus virion envelope protein A14
      0.038   13.2   0.0      0.038   13.2   0.0    1.0  1  SecY      SecY translocase
        0.1   12.7   0.0       0.13   12.4   0.0    1.2  1  DUF1707   Domain of unknown function (DUF1707)


Domain annotation for each model (and alignments):
>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.2   1.2e-17   5.4e-14       1      44 []      15      58 ..      15      58 .. 0.98
   2 ?   -3.7   0.2       2.9   1.3e+04      40      43 ..      63      66 .]      61      66 .] 0.45

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.2e-17
        CcmD  1 GgYafYVWlsYgitllvlagLilwslrdrrrllrelrrleaReq 44
                G ++ YVWl+Y++t+++++gLi+++  +r+ ++++l r++aR++
  EGE27893.1 15 GDHGYYVWLCYALTVIAILGLIIYTKNERKVTIQKLSRQHARGR 58
                89****************************************96 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.9
        CcmD 40 eaRe 43
                ++R+
  EGE27893.1 63 QRRQ 66
                4443 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   3.5e-06     0.016      50      87 ..      23      61 ..      11      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.5e-06
     Pox_A14 50 vsFilgivillglllfsmygrkCkat.sskvveearyns 87
                +++ l+++++lgl+++   +rk  ++  s++  ++r+ +
  EGE27893.1 23 LCYALTVIAILGLIIYTKNERKVTIQkLSRQHARGRLTN 61
                79*********************9987778888888876 PP

>> SecY  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.4e-06     0.038     115     160 ..       9      57 ..       1      66 [] 0.66

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.4e-06
                 S-HHHHSS..THHHHHHHHHHHHHHHHHCHHHHBEEEECBBBSTT..... CS
        SecY 115 sglielalegilallllllvtllvillvvyveeaerripvqyakr....g 160
                 s++i++  +g   + l  ++t++ il++++ ++ er++++q+  r    g
  EGE27893.1   9 SEFIAMGDHG-YYVWLCYALTVIAILGLIIYTKNERKVTIQKLSRqharG 57 
                 4444443224.56778888888899999999999*******998743222 PP

>> DUF1707  Domain of unknown function (DUF1707)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.9e-05      0.13       5      26 ..      40      61 ..      38      66 .] 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
     DUF1707  5 dadReravelLrealaeGrLtl 26
                  +R+ +++ L++  a+GrLt 
  EGE27893.1 40 KNERKVTIQKLSRQHARGRLTN 61
                579*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 503.21
//
Query:       EGE27894.1  [L=173]
Description: cytochrome c-type biogenesis protein CcmE [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-43  146.4   0.0      5e-43  146.1   0.0    1.1  1  CcmE      CcmE


Domain annotation for each model (and alignments):
>> CcmE  CcmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.0   2.8e-47     5e-43       2     128 .]       5     131 ..       4     131 .. 0.98

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 2.8e-47
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSXXBXTTTTTS--S-TTSEEEEEEEE-TTT-EE-T.TSSEEEEEEE-T.-EEEEEEES---TT--TTSE CS
        CcmE   2 rkkrlklivllllvlaavvvlvlsalqenlvyfltpsevlekkaeegrrlrvgGlVkegsvkrdp.esleveFvvtdlekelkVeYegilPdlFregqg 99 
                 r+k+l++++++ll+ +++v l+l+a++++++y++ p+ v++++a+e +r+rvgG+V++gsv+rdp ++l+++F++td ++ ++V+Y+g+lPdlF e++g
  EGE27894.1   5 RQKKLMWVLAVLLGAVVAVSLILYAIRNQTDYYFDPTAVAAGQAPEAKRIRVGGMVVAGSVQRDPsDQLNIQFKITDYKSVVPVSYRGVLPDLFAENSG 103
                 789**************************************************************999*********99******************** PP

                 EEEEEEE-TTSEEEECCEEESS-XXXX.H CS
        CcmE 100 vvveGrleedgvfeAeevlaKhdekYmpk 128
                 +v++G+l+ dg+f A evlaKhde+Ymp+
  EGE27894.1 104 IVATGELQ-DGMFVAGEVLAKHDENYMPP 131
                 *******6.78****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1242.95
//
Query:       EGE27895.1  [L=276]
Description: D-methionine ABC transporter substrate binding protein MetQ [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-95  316.5   9.3    8.6e-95  316.3   9.3    1.0  1  Lipoprotein_9  NLPA lipoprotein
    0.00064   19.4   2.1     0.0013   18.4   2.1    1.8  1  OpuAC          Substrate binding domain of ABC-type glycine b


Domain annotation for each model (and alignments):
>> Lipoprotein_9  NLPA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.3   9.3   9.6e-99   8.6e-95       1     236 []      39     276 .]      39     276 .] 0.99

  Alignments for each domain:
  == domain 1  score: 316.3 bits;  conditional E-value: 9.6e-99
                    EEEEEETTTHHHHHHHHHHHHHTTT.EEEEEEEESSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHH.TT-.EEEEEEEEE---EEE-SS-SSGGG- CS
  Lipoprotein_9   1 lkvGvlsgpeaevlekvkkllkkkg.ldleiveFtdyvqpNkaladgeiDanaFQhlpyLeqfnke.kgkklvavgnthvepiglYSkkykslsel 94 
                    +kvGv++gpe+ v+e++ +++k+k+ l++e+veF+dy++pN a+++ge+Dana Qh+pyLe+  +e + ++lv vgnt+v+p++ YS+k+k+l+el
     EGE27895.1  39 IKVGVMAGPEQAVAEVAGQVAKEKYnLTVELVEFNDYAMPNSAVSKGELDANAMQHKPYLEKDSQEkGLNNLVIVGNTFVYPLAGYSTKIKTLNEL 134
                    89****************************************************************55578************************* PP

                    -TT-EEEEESSHHHHHHHHHHHHHTTSSEE-TT-CTT--GGGEEE-TT--EEEEE-GGGHHHHGGTSSEEEE-HHHHHHTT--HHHH-SEE-SSTS CS
  Lipoprotein_9  95 keGatiavpndpsnegRaLllLekagLikLkdgkgllatvkdIteNpknLkikeleaaqlpralddvdaavintnyalkagldpkkdalfeedkds 190
                    k+Gatiavpndpsn +RaL+lLek+gLikLkd+++l++t+ dI+eNpk+L+ike+++++ +ra+ddvd+av+n+nya + gl+ +++++f+edkds
     EGE27895.1 135 KDGATIAVPNDPSNLARALILLEKQGLIKLKDNTNLFSTTLDIVENPKKLVIKEVDTSVAARAIDDVDLAVVNNNYAGQVGLTASENGVFVEDKDS 230
                    ************************************************************************************************ PP

                    SG-EEEEEETTCTTSHHHHHHHHHHTSHHHHHHHHHHTTTSSEE-S CS
  Lipoprotein_9 191 pyvniivvrekdkddeavkklveayqseevkkaiekkykgavvpaw 236
                    pyvniiv+r+++kd++a++++v+ayq++ev++ ++k++k++v+++w
     EGE27895.1 231 PYVNIIVARADNKDSKAIQDFVKAYQTDEVEAEAKKQFKDGVIKGW 276
                    *******************************************998 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   2.1   1.4e-07    0.0013       2     113 ..      38     139 ..      37     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.4e-07
                 EEEEEEESSHHHHHHHHHHHHHHHHT.TEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEEECEEEEEEHHHHHH CS
       OpuAC   2 tivigsknwteqevlaeilkqllekk.GykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgagnteglavpkyvaek 99 
                 ti++g++  +eq ++ae+++q+ ++k +++vel++++ +a+   a+++G++D+ +      +++ y ++++++kgl   +   +gnt  +    y    
  EGE27895.1  38 TIKVGVMAGPEQ-AVAEVAGQVAKEKyNLTVELVEFNDYAMPNSAVSKGELDANA-----MQHKPYLEKDSQEKGLN--NLVIVGNTFVYPLAGYS--- 125
                 899999999997.579***************************************.....55666666677666666..66777777777777777... PP

                 HTTTBHHHHCTHHG CS
       OpuAC 100 ygiksisDLkkpae 113
                 ++ik++ +Lk+ a 
  EGE27895.1 126 TKIKTLNELKDGAT 139
                 77888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2081.16
//
Query:       EGE27896.1  [L=229]
Description: D-methionine ABC transporter permease protein MetI [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-20   72.4  16.5    3.7e-20   72.4  16.5    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3      0.02   3.5e+02     141     172 ..      21      50 ..      13      57 .. 0.54
   2 !   72.4  16.5   2.1e-24   3.7e-20      10     181 ..      58     228 ..      43     229 .] 0.90

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.02
  BPD_transp_1 141 lleailgydyseisnggvlalviavlllnlva 172
                   + +++++  y   +  +++++v++ l++ ++a
    EGE27896.1  21 VAQSTWETIYMGLA--ATAIAVLVGLPMGFLA 50 
                   44555555555333..5555555555555554 PP

  == domain 2  score: 72.4 bits;  conditional E-value: 2.1e-24
  BPD_transp_1  10 lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPna 106
                      n+    +l+++i++++s+P+++l+i+l  v  +l + + + +++i+ l + a+p++ ++ ++al ++p++l eaa+ +Ga++wq++ k+ +  +
    EGE27896.1  58 ILENRSAFVILDVIINIGRSVPFIILLIILMPVTRFLVGTTLGTTAAIVPLSVAAIPFFARLSANALLEVPTGLTEAAKSMGATHWQVVSKYYFAES 154
                   5567788889*************************************************************************************** PP

  BPD_transp_1 107 lppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldp 181
                   lp +i  + l++++l+g ++++  +g+ +Glg+l ++  + +++ +  +++++++v++v+++  + d+l++ +d 
    EGE27896.1 155 LPILINAVTLTLVSLIGYSAMAGVVGG-GGLGSLAINYGEHRNMVYVKWISTIIIVAIVMIFQKAGDVLAAKVDH 228
                   **************************5.57************999999999999999999998888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1672.11
//
Query:       EGE27897.1  [L=348]
Description: DL-methionine transporter ATP-binding subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-32  113.4   0.0    1.5e-32  112.9   0.0    1.2  1  ABC_tran     ABC transporter
    2.5e-13   49.7   0.0    4.9e-13   48.7   0.0    1.5  1  NIL          NIL domain
    4.7e-09   36.5   0.1    0.00084   19.2   0.0    2.3  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    5.8e-08   32.4   0.1    1.3e-07   31.3   0.1    1.5  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00014   22.1   2.2      0.003   17.8   2.2    2.8  1  AAA_22       AAA domain
     0.0015   18.3   0.0     0.0032   17.2   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
     0.0093   16.4   0.6      0.039   14.3   0.6    2.0  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.011   16.3   0.3      0.024   15.1   0.3    1.6  1  AAA_23       AAA domain
      0.017   14.6   0.1        0.2   11.1   0.0    2.1  2  TniB         Bacterial TniB protein
      0.021   13.6   2.2        1.5    7.5   0.3    2.8  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.034   14.0   0.0       0.07   13.0   0.0    1.6  1  RsgA_GTPase  RsgA GTPase
      0.092   12.5   0.1       0.36   10.5   0.1    1.9  1  AAA_30       AAA domain
       0.12   12.6   0.0       0.84    9.9   0.0    2.1  2  AAA_28       AAA domain
       0.13   12.5   0.2       0.89    9.8   0.2    2.1  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.15   12.1   0.0       0.42   10.7   0.0    1.8  1  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.0   1.3e-35   1.5e-32       3     137 .]      27     173 ..      25     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 1.3e-35
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren.............esdeei 85 
                   +l+++ ge+++i+G +GaGKStL++++  l++p eG++ +d+ dl+    +el   r++ig+++q+ +l    t  en                +++
  EGE27897.1  27 PTDLTIQSGEIYGIIGASGAGKSTLIRCVNLLERPSEGSVVIDDVDLTAlseRELITQRRKIGMIFQHFNLLHSRTTFENialplelsgtpkaVIASKV 125
                 5689****************************************99999988899999**********9999999999999****99998555555556 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  ++l+ +gl++   ++ +  p++LSgGqkqrva+aral+++pk+ll+DE+t+
  EGE27897.1 126 GDLLELVGLSD---KK-DVYPANLSGGQKQRVAIARALASDPKVLLCDEATS 173
                 66666666666...33.3468*****************************96 PP

>> NIL  NIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   4.1e-16   4.9e-13       2      72 ..     272     342 ..     271     343 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 4.1e-16
                 EEEEEEES-S-SS-HHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT-EEE CS
         NIL   2 lirltftgksavePllshlvrqlglevnIlqGsveriqgtpfGqlvielsgsqesiaaalqylrkrnvdvE 72 
                 +i   ftg+s++ Pl s  ++q+++++nIl  ++++ ++ +fG  + el g+ +s+ +a+++l  + v +E
  EGE27897.1 272 VICFEFTGNSVDMPLFSLASKQFDVDFNILTSQMDYAGDIKFGFTIAELIGEGTSVMQAIEFLTTHRVNIE 342
                 67789***************************************************************998 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   9.6e-06     0.011       2      24 ..      38      60 ..      37     107 .. 0.81
   2 !   19.2   0.0     7e-07   0.00084     223     298 ..     131     204 ..      66     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.6e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 ++iG+ g+GKS+L+++  ll r
  EGE27897.1 38 YGIIGASGAGKSTLIRCVNLLER 60
                68*****************9943 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 7e-07
      AAA_21 223 flengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS 298
                 ++  +d +++ +++lS G+k+  a++ al++++   ++ll DE  + L+P+ + ++l+ll k++++ g+  +l TH 
  EGE27897.1 131 LVGLSDKKDVYPANLSGGQKQRVAIARALASDP---KVLLCDEATSALDPATTQSILTLLkKINEELGITMLLITHE 204
                 555678999*************99999999999...9***********************8777779*********6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.1   1.1e-10   1.3e-07      25     208 ..      36     214 ..      20     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 1.1e-10
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkev 123
                 ++  i+G+ G+GKs l+  +  +L   s  ++  +++ dl   s+++  +++ ++ ++f++ +   + +++  +i   ++ +g+ +  i  k     e+
  EGE27897.1  36 EIYGIIGASGAGKSTLIRCV-NLLERPSEGSVVIDDV-DLTALSERELITQRRKIGMIFQHFNLL-HSRTTFENIALPLELSGTPKAVIASKVGDLLEL 131
                 4678****************.5666555544444444.3444478999999999***99998876.6666667899999******************** PP

                 HHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadkl 208
                   l  ++++++ +LSgG+k+ va+a  +A    +p+ + l De  +aLD + ++ + +llk+ +++    ++ i+++ +++++    
  EGE27897.1 132 VGLSDKKDVYPANLSGGQKQRVAIARALAS---DPK-VLLCDEATSALDPATTQSILTLLKKINEElgITMLLITHEMDVVKRICDK 214
                 *************************99885...455.4578********************99988557789999999988876444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.2   2.5e-06     0.003       7     131 ..      37     204 ..      32     211 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.5e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee...................erpevvfvtlpsstsskdllrellralglelka................ 70 
                 i  ++G sG+GK+tl+r +       ++  e                                  ++    ++++ ++l +++                
  EGE27897.1  37 IYGIIGASGAGKSTLIRCVNLLER--PS--EgsvviddvdltalsereliT--------------QRRKIGMIFQHFNLLHSRttfenialplelsgtp 117
                 6669*************9988752..22..123445455555555555551..............4444444444444444445555555555555555 PP

      AAA_22  71 .......................erlsseellealeqalrarav.........ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvGtp 131
                                        +         a     ++++v         +++l+ DEa   l+   ++ +l+ L+++ +  + g++++L+ ++
  EGE27897.1 118 kaviaskvgdllelvglsdkkdvY--------PANLSGGQKQRVaiaralasdPKVLLCDEATSaLDpatTQSILTLLKKINE--ELGITMLLITHE 204
                 666666666666666555665663........33333333333333333344677*********9988755999999999999..999999998765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.6e-06    0.0032      16      41 ..      29      54 ..      21      64 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.6e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDA 41
                +++i+  +++ ++G+sG+GKSTl+  
  EGE27897.1 29 DLTIQSGEIYGIIGASGAGKSTLIRC 54
                56676555999************955 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.6   3.3e-05     0.039      23      61 ..      34      67 ..      24     201 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
      AAA_16 23 rpelvllsGesGvGKsslvrellralekd..ggiflrgkcd 61
                ++e+  ++G+sG GKs+l+r++   le+   g        +
  EGE27897.1 34 SGEIYGIIGASGAGKSTLIRCVN-LLERPseG------SVV 67
                4477889**************99.67776331......222 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.3     2e-05     0.024      18      41 ..      34      57 ..      11      58 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2e-05
      AAA_23 18 skgltlItGpNGaGKTTildAikl 41
                s  ++ I+G  GaGK+T+++++ l
  EGE27897.1 34 SGEIYGIIGASGAGKSTLIRCVNL 57
                557999**************9875 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.21   2.5e+02      40      53 ..      40      53 ..      32      69 .. 0.86
   2 ?   11.1   0.0   0.00017       0.2     107     160 ..     150     201 ..     137     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.21
        TniB 40 lvGdsnnGKtmive 53
                ++G s  GK+++++
  EGE27897.1 40 IIGASGAGKSTLIR 53
                99**********97 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00017
        TniB 107 leqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 +++ +++   + +++vL+ DE  ++l     + + +l +lk++++el i++ l+
  EGE27897.1 150 KQRVAIARALASDPKVLLCDEATSAL--DPATTQSILTLLKKINEELGITMLLI 201
                 55555555667899************..7778889**************99876 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.015        18     240     264 ..      30      55 ..      23      57 .. 0.89
   2 ?    7.5   0.3    0.0013       1.5     321     353 ..     143     175 ..     133     224 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.015
                 EEE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAl 264
                 + i+ G +  I+G    GKsTL++ +
  EGE27897.1  30 LTIQSGeIYGIIGASGAGKSTLIRCV 55 
                 6799999***************9976 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0013
                 SS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 321 edASGStsqAanimealeagakllLiDEDtsAt 353
                 ++ SG   q ++i++al  + k+lL DE tsA 
  EGE27897.1 143 ANLSGGQKQRVAIARALASDPKVLLCDEATSAL 175
                 6779999999******************99995 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.9e-05      0.07      99     119 ..      35      55 ..      13      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-05
                  TSEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinal 119
                  +++  ++G SG+GKStLi  +
   EGE27897.1  35 GEIYGIIGASGAGKSTLIRCV 55 
                  478889***********9765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0003      0.36      15      47 ..      33      69 ..      24     204 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
      AAA_30 15 tsgdrvavltGpAGtGKttalkalreaweaa.g....g 47
                +sg  +  + G+ G+GK+t+++ ++ + + + g     
  EGE27897.1 33 QSG-EIYGIIGASGAGKSTLIRCVNLLERPSeGsvviD 69
                455.48899*************9987777763344443 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0007      0.84       4      29 ..      40      70 ..      38     103 .. 0.76
   2 ?    0.0   0.0      0.75     9e+02      66      81 ..     156     171 ..     136     198 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0007
      AAA_28  4 itGgestGKTtlleaLa..ar...gypvvpE 29
                i+G++++GK+tl++  +  +r   g +v+ +
  EGE27897.1 40 IIGASGAGKSTLIRCVNllERpseGSVVIDD 70
                8***********9754433333446555555 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.75
      AAA_28  66 eeaaaaankvlfcDrg 81 
                 + a a+++kvl+cD  
  EGE27897.1 156 ARALASDPKVLLCDEA 171
                 2344589999999953 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00075      0.89      62      89 ..     161     188 ..     141     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00075
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                 +++++++ DEA s lD+ +++++l ll+
  EGE27897.1 161 SDPKVLLCDEATSALDPATTQSILTLLK 188
                 35889999****************9997 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00035      0.42       3      17 ..      39      53 ..      37      87 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00035
                EEEESTTSSHHHHHH CS
    MMR_HSR1  3 aivGrpNvGKStLin 17
                +i+G + +GKStLi+
  EGE27897.1 39 GIIGASGAGKSTLIR 53
                89************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 2682.81
//
Query:       EGE27898.1  [L=521]
Description: two component system sensor histidine kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-11   45.2   0.0    3.3e-11   43.7   0.0    1.9  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.2e-11   44.8   0.0    2.9e-11   43.6   0.0    1.7  1  HAMP         HAMP domain
    1.1e-08   35.0   3.0    1.9e-08   34.2   1.0    2.5  2  HisKA        His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
      0.068   13.1   0.0       0.61   10.0   0.0    2.3  2  HATPase_c_5  GHKL domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   7.3e-15   3.3e-11       4     111 ..     353     514 ..     350     515 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 7.3e-15
                 HHHHHHHHHHHHHHHHH.......HSTTTEEEE.........................................................EEEEEE... CS
   HATPase_c   4 krLrqiisnlvdNavkf.......atkageiev.........................................................eikase... 35 
                 k L+++++nl+ Na+ +               +                                                         e    +   
  EGE27898.1 353 KLLTHLVRNLLNNAMIHgippvqvY-------LyhatniqeatsipqylldsfcnigdgdilhsksdeanaldnktptdflkrltrpkdkE----Qkad 440
                 6799************955554440.......24444455566667788888888899988999999888888888888777444333331....1445 PP

                 ..TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEESS CS
   HATPase_c  36 ..ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlple 111
                   +  v+   D G Gipk+++k +f +f++    k++++g+GlGls+v ++ve ++G+i   ++  + t+f + lpl+
  EGE27898.1 441 qpNFAVLAFIDQGLGIPKDKRKDIFSPFVR---LKQEKKGSGLGLSLVSQIVEAHHGTIIT-DTWLGHTRFLVILPLT 514
                 5789999***********************...788999**************99999988.5555788888888876 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   6.5e-15   2.9e-11       1      53 []     187     239 ..     187     239 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 6.5e-15
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLre 53 
                 +++++i+ ++++L+r++ r+++Gd+++r+ ++g+DEi+ La+ fN+ ++++++
  EGE27898.1 187 WISHSITWRINQLSRQMSRLGEGDFSVRVSEEGNDEIAVLAHGFNQSAQKIEQ 239
                 78999999**************************************9999875 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   1.0   4.3e-12   1.9e-08       3      67 .]     245     314 ..     243     314 .. 0.82
   2 ?   -0.8   0.0      0.37   1.7e+03      26      60 ..     316     364 ..     315     370 .. 0.71

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 4.3e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC...T-HSSCHH....HHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkre.gklteelke....yletiesearrldhlvedlLdlsrieag 67 
                 + +la+ +HE+rtP++ i++ +e++     +l+e  k+      + + +    l++lve +L  sr++ag
  EGE27898.1 245 SLLLAHASHEFRTPITRIRLQIEMMDMLtSQLDETTKAkfdkRAAAVNRDLTGLNDLVESILLVSRLDAG 314
                 569**********************774544555555566668888888888****************97 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.37
                 HHHC..T-HSSCHHHHHHHHHHHH...................HHHHHHHHHHH CS
       HisKA  26 aLkregklteelkeyletiesear...................rldhlvedlLd 60 
                 aL+       e+ ++ e i+se++                    l+hlv +lL 
  EGE27898.1 316 ALQA-----TEQVDLYELIRSEVQhypeatligesvsmmaqpkLLTHLVRNLLN 364
                 5555.....567777777777777777777777777777777778899999886 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.21   9.3e+02       6      18 ..     355     367 ..     350     369 .. 0.85
   2 ?   10.0   0.0   0.00014      0.61      60      89 ..     471     500 ..     456     512 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
  HATPase_c_5   6 lcvilgnlLdNAi 18 
                  l+ ++ nlL+NA+
   EGE27898.1 355 LTHLVRNLLNNAM 367
                  788999******8 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00014
  HATPase_c_5  60 skskkeehGiGlksireivkkykgnlsiea 89 
                   k++k+  G+Gl+ +++iv+ ++g++ +++
   EGE27898.1 471 LKQEKKGSGLGLSLVSQIVEAHHGTIITDT 500
                  588999******************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3754.51
//
Query:       EGE27899.1  [L=34]
Description: hypothetical protein EA1_00910 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       123  (0.00686039); expected 358.6 (0.02)
Passed bias filter:                      112  (0.00624686); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 251.16
//
Query:       EGE27900.1  [L=240]
Description: two-component system response regulator [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-26   92.1   0.3    3.7e-26   91.5   0.3    1.3  1  Response_reg  Response regulator receiver domain
    4.7e-23   81.1   0.3    8.1e-23   80.3   0.0    1.6  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
       0.11   13.2   0.0       0.18   12.4   0.0    1.3  1  DUF4402       Domain of unknown function (DUF4402)
       0.12   12.3   0.1       0.25   11.4   0.1    1.5  1  Ovate         Transcriptional repressor, ovate


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.3   8.3e-30   3.7e-26       1     112 []       5     121 ..       5     121 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 8.3e-30
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH..HHHHESEEEEESSCSSSEHHHHHHHHHHCT....TTSEEEEEESSTSHHHHHHHHH CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealell..keekvdlillDinmpgmdGlellkeireed....pelpviiltahseeedavealk 91 
                   +l+++Ddp+++el++++l  + y ev+ a++g+  l++l  ke+++ li+lD+++p+mdG+e+++++r  +    +++p+++lta+++ +d+v +l+
    EGE27900.1   5 ILLIEDDPDLAELISDYLSMNYY-EVHHAATGQGGLDILdtKERDISLIVLDLMLPDMDGMEVCQKVRGSKntmiNKVPIVMLTAKGDTTDRVLGLE 100
                   89*****************9999.***************555666**********************9998778888******************** PP

                   CTESEEEESSG-HHHHHHHHH CS
  Response_reg  92 agaddflsKpfdpeeLlkale 112
                   +gadd+++Kpf+p+eLl++++
    EGE27900.1 101 MGADDYIAKPFEPRELLARIR 121
                   *****************9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       2.8   1.2e+04      51      60 ..     118     127 ..     116     133 .. 0.70
   2 !   80.3   0.0   1.8e-26   8.1e-23       2      77 .]     159     235 ..     157     235 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.8
                  HHHHHHHHTT CS
  Trans_reg_C  51 srLRkkLedd 60 
                  +r+R  L+ +
   EGE27900.1 118 ARIRAVLRRH 127
                  6888888874 PP

  == domain 2  score: 80.3 bits;  conditional E-value: 1.8e-26
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTS.TSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgede.dvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ++v+lt+ +f+lL++++ ++g+v+ re+L +++ ++d+ +  dr++dvhisrLR  +ed++++p++I tvrgvGY++
   EGE27900.1 159 KTVRLTTHQFQLLHYFATHAGKVLNREQLWQAMPNDDSsENIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235
                  569**********************************99999*********************************97 PP

>> DUF4402  Domain of unknown function (DUF4402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.1e-05      0.18       5      40 ..     136     171 ..     133     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.1e-05
     DUF4402   5 ktadLnFGtiaspstggtVtiapdGsrsatgsvslt 40 
                 ++ +L+FG++++ + + +Vti+ ++ r +t +++l+
  EGE27900.1 136 NSGSLTFGRLTVYPDSHEVTIDEKTVRLTTHQFQLL 171
                 5678*****************************993 PP

>> Ovate  Transcriptional repressor, ovate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.6e-05      0.25      21      45 ..       8      32 ..       2      35 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.6e-05
       Ovate 21 ikdweeLeeLLacYLslNskehhkl 45
                i+d+ +L eL+  YLs+N  e+h++
  EGE27900.1  8 IEDDPDLAELISDYLSMNYYEVHHA 32
                67899****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1858.80
//
Query:       EGE27901.1  [L=334]
Description: putative lipoprotein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00014   21.6   0.0     0.0016   18.3   0.0    2.5  1  Biotin_lipoyl    Biotin-requiring enzyme
    0.00079   18.7   0.0      0.034   13.4   0.0    2.3  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
      0.001   19.8   0.1     0.0032   18.1   0.0    1.9  2  HlyD_3           HlyD family secretion protein
     0.0025   17.6   0.2       0.24   11.3   0.1    2.9  3  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.5e-07    0.0016      16      73 .]      96     158 ..      86     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.5e-07
                    ECSESSSTTCEE-TTSEEE....EEECTTEEE.EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  16 vvevlvkvGdkVkagqvla....eveamKmem.eieapkaGvvkeilvkeGdtvevgdllaki 73 
                    v+ ++v +Gd+V++g+ l+     +e+   e+ +++ap +Gvv+ + +  ++  +++++l++i
     EGE27901.1  96 VEHIFVDAGDEVSKGDALLgyftHLESLPSEVtTLPAPFDGVVHRVFAHTDQHYDANTPLIEI 158
                    6689*************975555799999876379*************************997 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.011        51      27      49 ..      93     114 ..      78     120 .. 0.86
   2 !   13.4   0.0   7.6e-06     0.034     106     172 ..     125     191 ..     119     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.011
                 XXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  27 eGwveklyvnatgdkVkkGqpLa 49 
                 +  ve+++v+  gd+V+kG++L+
  EGE27901.1  93 AVIVEHIFVD-AGDEVSKGDALL 114
                 55799*****.9********996 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 7.6e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 106 qktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtveal 172
                 ++++t+ ap++GvV +  + + q+ +++++l++i d+s++  +  +  + ++  k g++v++ v+ +
  EGE27901.1 125 SEVTTLPAPFDGVVHRVFAHTDQHYDANTPLIEIHDISQLKFISYLSSALMNDTKLGDAVTFGVDGI 191
                 6788999********************************9999888888888888888888777655 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         4   1.8e+04      12      27 ..      98     113 ..      92     114 .. 0.62
   2 !   18.1   0.0   7.2e-07    0.0032       2      97 ..     130     220 ..     129     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4
      HlyD_3  12 elnveegevvqagdel 27 
                  + v +g+ v++gd+l
  EGE27901.1  98 HIFVDAGDEVSKGDAL 113
                 4556677777777776 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 7.2e-07
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevslenpe 97 
                 l Ap+dGvv+ + +   +   a+++l ei + ++l++  ++++a ++   k g++vt+ +d g   +  g+i+++  + +++   ++v v +e+++
  EGE27901.1 130 LPAPFDGVVHRVFAHTDQHYDANTPLIEIHDISQLKFISYLSSALMNDT-KLGDAVTFGVD-G--IAHVGQISQVNVS-EQNPKLIEVHVIIEPNP 220
                 67*********************************************96.69******998.4..4677777777654.44456677777666665 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   5.3e-05      0.24      12      31 ..      95     114 ..      85     115 .. 0.90
   2 ?    2.8   0.0     0.023   1.1e+02       1      22 [.     126     147 ..     126     158 .. 0.87
   3 ?   -1.8   0.0      0.66     3e+03      11      20 ..     195     204 ..     195     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.3e-05
  Biotin_lipoyl_2  12 rVaqlnVkdGqrVkaGdvLa 31 
                       V+ ++V  G++V +Gd L+
       EGE27901.1  95 IVEHIFVDAGDEVSKGDALL 114
                      6999*************996 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.023
  Biotin_lipoyl_2   1 evvsIaapvsGrVaqlnVkdGq 22 
                      ev+++ ap++G+V++++ +  q
       EGE27901.1 126 EVTTLPAPFDGVVHRVFAHTDQ 147
                      688999*********9877666 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.66
  Biotin_lipoyl_2  11 GrVaqlnVkd 20 
                      G+++q+nV +
       EGE27901.1 195 GQISQVNVSE 204
                      899****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2464.21
//
Query:       EGE27902.1  [L=174]
Description: cytochrome b561 family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-17   64.1  16.1    2.1e-17   63.3  16.1    1.4  1  Ni_hydr_CYTB     Prokaryotic cytochrome b561
  ------ inclusion threshold ------
       0.26   10.8   2.6        2.7    7.5   0.2    2.1  2  Cytochrome-c551  Photosystem P840 reaction-centre cytochrome 
       0.55   10.5  11.9       0.21   11.9   5.0    2.2  2  DUF4383          Domain of unknown function (DUF4383)
       0.71   10.3  10.4       0.12   12.8   0.8    2.6  3  DUF3975          Protein of unknown function (DUF3975)


Domain annotation for each model (and alignments):
>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3  16.1   4.6e-21   2.1e-17       1     179 [.      14     173 ..      14     174 .] 0.82

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 4.6e-21
                   -----TTHHHHHHHHHHHHHHHHHHHHHS------S-GGG-HHHHHHHHHHHHHHHHHHHHHHH------------STTTSSSSS------------ CS
  Ni_hydr_CYTB   1 ryslvarllHWlnallvvllllsgllianlhprlywgdsgkaralHklaGlvllalllfrllwlkkakkpspriifrqikrdltlllrgrkpeagkn 97 
                   +y+l ar++HW+ all+vl+ +        + ++y       + lHk++G+ +l+ +++r++ +                  +++   ++ p  + +
    EGE27902.1  14 KYNLAARIFHWIGALLIVLAWFLAQ-----QGEDY-------LSLHKSIGVSFLIWTMLRIANR------------------VFTKDPTPLPVSKIY 80 
                   5999*****************9886.....34444.......89********************..................333333333333444 PP

                   ----TT...THHHHHHHHHHHHHHHHHHHTHHHHHHHH..............HTS-THHHHHHH.HHHHHHH.HHHHHHHHHHHHHHH---X.XXXX CS
  Ni_hydr_CYTB  98 nplqkl...vhlllyvllvvliltGlllsfaatagfpll...........lddkggaqlarelHellaaall.afvvlHiaaallhgpvkkd.tlrr 178
                   +    +   vhl+lyv+++v++lt +l s     g+++             ++ ++a+ +  +H  +++ +l +fv++Hi++al+h+++ kd +l+r
    EGE27902.1  81 TV---IanvVHLALYVAMIVMPLTAFLASM--YGGYGVNvfgiisisgfkIPNTELADRLIDWHTDIVWPMLlVFVAAHIIGALYHQFILKDhILSR 172
                   44...3555*******************66..4444444446667777778********************************************** PP

                   X CS
  Ni_hydr_CYTB 179 M 179
                   M
    EGE27902.1 173 M 173
                   9 PP

>> Cytochrome-c551  Photosystem P840 reaction-centre cytochrome c-551
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.3      0.01        47      60      98 ..      52      92 ..      42     108 .. 0.79
   2 ?    7.5   0.2    0.0006       2.7      21      67 ..     112     159 ..     102     164 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.01
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXX CS
  Cytochrome-c551 60 asliilglGklsskisdkwflsfplsilviva..vmfvsle 98
                      s++i+++ +++ ++  k    +p+s +  v+  v+ ++l 
       EGE27902.1 52 VSFLIWTMLRIANRVFTKDPTPLPVSKIYTVIanVVHLALY 92
                     5899*********************9775444015555554 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0006
                      XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX CS
  Cytochrome-c551  21 GalffgvsfltGykvpaenisavltplksfmGw.flliffasliilgl 67 
                      G   fg+  ++G+k+p  +++  l   ++ + w +ll+f+a+ ii +l
       EGE27902.1 112 GVNVFGIISISGFKIPNTELADRLIDWHTDIVWpMLLVFVAAHIIGAL 159
                      5667999999******************99999667899999999766 PP

>> DUF4383  Domain of unknown function (DUF4383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3     0.037   1.7e+02      71      89 ..      18      36 ..       4      47 .. 0.77
   2 ?   11.9   5.0   4.7e-05      0.21      49     123 ..      82     158 ..      79     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.037
     DUF4383 71 garlyllllgvvylllail 89
                +ar++ ++++++ +l + l
  EGE27902.1 18 AARIFHWIGALLIVLAWFL 36
                6788888888888887766 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.7e-05
     DUF4383  49 llhnlvhllvGvlglaaarsasgarlyllllgvvylllailgllvldkt..anllplngadnwlhlllalvllalgl 123
                 ++ n+vhl++ v+ +++  +a +a +y+ ++  v++++ i g+ + +++    l+  ++  +w  ll+ +++ ++g+
  EGE27902.1  82 VIANVVHLALYVAMIVMPLTAFLASMYGGYGVNVFGIISISGFKIPNTElaDRLIDWHTDIVWPMLLVFVAAHIIGA 158
                 789****************************************9977779778999999999988888888877775 PP

>> DUF3975  Protein of unknown function (DUF3975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.8   2.8e-05      0.12      11      79 ..       5      70 ..       2      71 .. 0.91
   2 ?   -2.4   0.2       1.6     7e+03      46      46 ..      90      90 ..      76     108 .. 0.44
   3 ?    4.3   0.3     0.013        57       8      36 ..     134     164 ..     128     174 .] 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.8e-05
     DUF3975 11 awitlgivillqisfhiiewlfhkvvsiltflpnmtlemisivrsiiasiaiviiwsiaklwnklfkkd 79
                + it   vi  +++  i  w+   ++ +  fl +   + +s+ +si  s    +iw++ ++ n++f kd
  EGE27902.1  5 TQITSARVIKYNLAARIFHWIGALLIVLAWFLAQQGEDYLSLHKSIGVSF---LIWTMLRIANRVFTKD 70
                67899999999***********99999999****************9885...78************99 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
     DUF3975 46 t 46
                +
  EGE27902.1 90 A 90
                2 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.013
     DUF3975   8 qllawitlgi..villqisfhiiewlfhkvv 36 
                 +l+ w t  +  ++l+ ++ hii  l+h+ +
  EGE27902.1 134 RLIDWHTDIVwpMLLVFVAAHIIGALYHQFI 164
                 67777764432257788999********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1378.04
//
Query:       EGE27903.1  [L=317]
Description: ribose-phosphate pyrophosphokinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-51  171.1   0.1    6.7e-49  164.7   0.0    2.4  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    9.1e-30  104.0   2.0    1.7e-29  103.2   1.6    1.6  1  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    1.2e-18   67.1   2.4    1.8e-18   66.6   1.0    1.9  2  Pribosyltran    Phosphoribosyl transferase domain
     0.0088   15.5   0.2      0.018   14.5   0.1    1.6  2  UPRTase         Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
      0.059   13.3   0.0        0.1   12.6   0.0    1.4  1  Ses_B           SesB domain on fungal death-pathway protein


Domain annotation for each model (and alignments):
>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   0.0   1.9e-52   6.7e-49       1     116 []       4     121 ..       4     121 .. 0.98
   2 ?    4.2   0.1     0.011        39      34      83 ..     200     245 ..     175     274 .. 0.79

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 1.9e-52
  Pribosyltran_N   1 lkifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqd 95 
                     + +f+gs++++La+ +a++l+++lgka+++rf+dgEi vei+e+vrgkdvfi+q++++p+nd+lme++l++dalrr+sa ritaViPy+gy+rqd
      EGE27903.1   4 MAVFSGSANPKLAQTVADNLHIPLGKADINRFSDGEIAVEIKENVRGKDVFILQPTCAPTNDHLMEVILLADALRRSSAGRITAVIPYFGYARQD 98 
                     789******************************************************************************************** PP

  Pribosyltran_N  96 rk.ks.repisaklvaklLeaaG 116
                     r+ +s r+pisak+va++L+ aG
      EGE27903.1  99 RRpRSaRVPISAKVVADMLSIAG 121
                     **9777*************9988 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.011
  Pribosyltran_N  34 dgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakrit 83 
                     ++   ++i  +v g+d++i+ ++++        l+  ++al+   a+r++
      EGE27903.1 200 NESQVMHIIGDVSGRDCVIVDDIVDT----AGTLCKAAQALKDHGARRVV 245
                     333344677799********999866....56688889999999999886 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   1.6   4.8e-33   1.7e-29      70     183 ..     200     313 ..     191     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 4.8e-33
                     -------EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE--HH CS
  Pribosyl_synth  70 kekppltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdisl 164
                      e   + ++Gdv+Gr  +ivdd++d + ++ +aa+ lk++Ga +++  +th +ls +a +++++sa+de+vvt+tip       c  i+ + i+ 
      EGE27903.1 200 NESQVMHIIGDVSGRDCVIVDDIVDTAGTLCKAAQALKDHGARRVVGYITHPVLSGKAIETIQKSALDELVVTDTIPLSEAASACANIRQISIAS 294
                     5666799**************************************************************************************** PP

                     HHHHHHHHHHHT---TT-S CS
  Pribosyl_synth 165 llaeairrihngesmsylf 183
                     ++ae++rri n+es+s +f
      EGE27903.1 295 MIAESLRRINNEESISAMF 313
                     ****************998 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.49   1.8e+03      44      92 ..      16      55 ..      14      57 .. 0.65
   2 !   66.6   1.0   4.9e-22   1.8e-18      22     118 ..     156     244 ..     151     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.49
                  HHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEE CS
  Pribosyltran 44 akiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVli 92
                  a+ +ad L +pl   ++ +++++   +            e+++gk V+i
    EGE27903.1 16 AQTVADNLHIPLGKADINRFSDGEIAVE---------IKENVRGKDVFI 55
                  6677777777777777776666555555.........456777777776 PP

  == domain 2  score: 66.6 bits;  conditional E-value: 4.9e-22
                   EEEE--GGGEEEEEEETTTHHHHHHHHHHS.TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSE CS
  Pribosyltran  22 ileeyngkpdvvvgiargGvpfakiladeL.evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpee 117
                   + ++ n+++ +vv ++ gGv++a ++a+ L ++ la+++k++ r++ s++++          +d+ g+ ++iVDDi+dt+gTl++a+++Lk++g+ +
    EGE27903.1 156 LKQQ-NYENLMVVSPDVGGVVRARAMAKLLgDADLAIIDKRRARANESQVMH--------IIGDVSGRDCVIVDDIVDTAGTLCKAAQALKDHGARR 243
                   5555.99************************999*****************8........79*********************************96 PP

                   E CS
  Pribosyltran 118 v 118
                   v
    EGE27903.1 244 V 244
                   5 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.1   4.1e+03     112     133 ..      41      62 ..      25      76 .. 0.71
   2 !   14.5   0.1   5.1e-06     0.018      83     151 ..     178     243 ..     153     277 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
     UPRTase 112 ynkLPkkiaertvlllDpviaT 133
                    + ++++ + v++l p++a 
  EGE27903.1  41 AVEIKENVRGKDVFILQPTCAP 62 
                 4556677778889999999884 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 5.1e-06
     UPRTase  83 ealrellpearvghlglqreeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvge 151
                 +a+ +ll +a +  +   r  ++ +    + ++  +++ r  +++D ++ T g++++a q Lk++g++ 
  EGE27903.1 178 RAMAKLLGDADLAIIDKRRARANES---QVMHIIGDVSGRDCVIVDDIVDTAGTLCKAAQALKDHGARR 243
                 5556666666555554444443333...3334567889999***********************99863 PP

>> Ses_B  SesB domain on fungal death-pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.8e-05       0.1       3      14 ..       1      12 [.       1      33 [. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
       Ses_B  3 wssmAsFSGSeN 14
                +s+mA+FSGS N
  EGE27903.1  1 MSYMAVFSGSAN 12
                59********66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2263.16
//
Query:       EGE27904.1  [L=33]
Description: hypothetical protein EA1_00935 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       131  (0.0073066); expected 358.6 (0.02)
Passed bias filter:                      123  (0.00686039); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 260.66
//
Query:       EGE27905.1  [L=290]
Description: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-09   35.8   0.0    1.5e-08   34.7   0.0    1.5  1  GHMP_kinases_N  GHMP kinases N terminal domain
  ------ inclusion threshold ------
       0.11   12.1   0.0        0.2   11.2   0.0    1.4  1  Tenui_NCP       Tenuivirus major non-capsid protein


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.7e-12   1.5e-08       3      64 ..      91     145 ..      90     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.7e-12
                     EEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH CS
  GHMP_kinases_N   3 vikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleaerlaqggngsggDvaasvy 64 
                      +++ iP+gaGLG++++ +++++ Al++l+      ++l+l+a      g   g Dv+++++
      EGE27905.1  91 DLQKHIPTGAGLGGGSSNCATTLIALNQLWA-----LDLSLQALI--DFGQQLGADVPFFIF 145
                     67899*************************6.....555555555..558999****99987 PP

>> Tenui_NCP  Tenuivirus major non-capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.2e-05       0.2      39      78 ..      58      98 ..      38     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.2e-05
   Tenui_NCP 39 pervted.tkklilkgcvyiayhhpletdtlfikvhkhipe 78
                 e +t++  ++li+k +  +a h+p  +  l+i ++khip 
  EGE27905.1 58 AEGLTKElDQNLIVKAVTLLAKHFPNHAKPLIIDLQKHIPT 98
                55566541578****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2241.25
//
Query:       EGE27906.1  [L=190]
Description: outer membrane lipoprotein LolB [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-32  110.5   0.0    9.1e-32  110.2   0.0    1.0  1  LolB      Outer membrane lipoprotein LolB


Domain annotation for each model (and alignments):
>> LolB  Outer membrane lipoprotein LolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   5.1e-36   9.1e-32       2     151 ..      40     188 ..      39     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 5.1e-36
        LolB   2 qwqlsGrlavks....peqsvsanfdwqqqgdryeleLtspLGqtvlelevdpegatledsdgqaytaadaeeLleellgwelPvsgLrqWvlglpapa 96 
                 +++++G+++v +    ++q++sa ++w+q++dr+ +eLt++LG +++++++++++a l ++++ ++ta+++e+Ll +++gw+ P+s+L++W+lg+ ap+
  EGE27906.1  40 KFAVTGKIGVVTttpeGRQAGSAFYTWTQEDDRFAIELTGMLGIGATQIRYNGTTAALDSERTGTITADTPEALLLTATGWQAPISQLPHWILGRGAPD 138
                 5899*******8888899********************************************************************************* PP

        LolB  97 aeeleldeqgrlekleqdgwevrYqnyqdvegvplPkrlelereelqqrikLvid 151
                 ++++ +d+ grl +  +  w+++++  +    ++lP+rl++++ ++ ++i+++++
  EGE27906.1 139 DSTAGYDHLGRLVSAANGAWHAQFDYDK----TSLPSRLRITHTNQ-HSITMTVT 188
                 ************************9644....6********65444.69999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1568.17
//
Query:       EGE27907.1  [L=669]
Description: tetratricopeptide TPR_2 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-17   63.9  37.7     0.0047   17.4   2.2    9.1 10  TPR_19      Tetratricopeptide repeat
    3.3e-11   42.4  16.4    0.00079   19.4   0.1    7.9  8  TPR_2       Tetratricopeptide repeat
      2e-07   30.9   2.2       0.17   12.0   0.1    4.3  4  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
    9.4e-07   28.4  10.4      0.012   15.4   0.1    6.4  7  TPR_1       Tetratricopeptide repeat
    1.4e-06   28.8  25.6       0.05   14.3   0.0    7.6  7  TPR_16      Tetratricopeptide repeat
    1.6e-05   25.0  13.2      0.014   15.6   0.5    5.5  5  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
    2.6e-05   23.1   0.7       0.24   10.1   0.0    3.5  4  PknG_TPR    Protein kinase G tetratricopeptide repeat
    3.6e-05   24.2  34.4          6    8.0   0.5   11.8 12  TPR_14      Tetratricopeptide repeat
    6.5e-05   22.8  11.9        2.2    8.7   0.0    7.8  8  TPR_8       Tetratricopeptide repeat
     0.0006   20.3   0.2       0.08   13.6   0.0    7.6  9  TPR_6       Tetratricopeptide repeat
     0.0033   17.7  22.3       0.64   10.3   0.1    7.1  5  TPR_12      Tetratricopeptide repeat
     0.0056   16.3   3.7       0.93    9.1   0.1    4.5  5  HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
  ------ inclusion threshold ------
      0.027   14.2   0.4      0.027   14.2   0.4    3.7  5  TPR_21      Tetratricopeptide repeat-like domain
      0.036   14.1  13.7          4    7.7   0.1    7.4  8  TPR_7       Tetratricopeptide repeat
      0.054   12.2   0.6       0.59    8.8   0.1    2.4  3  DUF3808     Protein of unknown function (DUF3808)
      0.084   13.3   3.7        1.8    9.0   0.1    3.9  3  DUF1039     Protein of unknown function (DUF1039)
       0.11   12.2   0.1       0.51   10.1   0.1    1.9  2  DUF3799     PDDEXK-like domain of unknown function (DUF3799)
       0.41   11.1   8.5         32    5.2   0.3    5.4  4  TPR_17      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.91   9.1e+02       2      16 ..     158     172 ..     157     188 .. 0.82
   2 !   13.7   0.0   6.9e-05     0.069      14      57 ..     202     246 ..     191     254 .. 0.85
   3 !   13.3   0.5   9.2e-05     0.092       5      43 ..     293     331 ..     287     331 .. 0.93
   4 !   14.5   0.6   3.9e-05     0.039      13      59 ..     335     380 ..     334     390 .. 0.91
   5 !   16.1   0.1   1.2e-05     0.012       1      54 [.     357     409 ..     357     418 .. 0.91
   6 !   10.5   0.0   0.00069      0.69       2      46 ..     391     435 ..     390     441 .. 0.87
   7 !   13.2   0.0    0.0001       0.1       5      57 ..     428     479 ..     425     485 .. 0.93
   8 !   17.4   2.2   4.7e-06    0.0047       2      61 ..     458     518 ..     457     525 .. 0.83
   9 ?    2.3   0.9      0.25   2.5e+02      27      62 ..     550     588 ..     530     592 .. 0.64
  10 !    7.0   1.7    0.0082       8.2       1      61 [.     603     662 ..     603     664 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.91
      TPR_19   2 laegdyaeAlalleq 16 
                  ++gd  +Al+++++
  EGE27907.1 158 ADRGDIRRALNIYKA 172
                 689**********97 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6.9e-05
      TPR_19  14 leqalqe.dpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 ++ a+q+ +p++  a+ +   + l++g++++A a++++++  dp 
  EGE27907.1 202 FATAWQDrNPDHIPAWFYVTHLALKAGEYNQAAAMISTILHYDPR 246
                 44566555*********************************9998 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 9.2e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqlde 43 
                  dy++A  +  qal+ +p+n++   l  ++l a++qlde
  EGE27907.1 293 ADYQAARLHVNQALSIEPNNLAFITLKLDILRAANQLDE 331
                 49***********************************98 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 3.9e-05
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                 +l qa ++ pk  e+ l+ A+ l++ g+l +A +lL ++ + ++d  
  EGE27907.1 335 YLHQARKQLPKEKELYLYEARHLIEVGDLSQAWQLLTQAVKNTQD-K 380
                 799**************99*************************9.3 PP

  == domain 5  score: 16.1 bits;  conditional E-value: 1.2e-05
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 l++ gd+ +A +ll+qa  ++ ++ ++ ll   + l +g++++A+++L++l + 
  EGE27907.1 357 LIEVGDLSQAWQLLTQA-VKNTQDKDIILLAGLVGLDSGRYADAIEILKPLTKN 409
                 6788************8.66799***************************9876 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00069
      TPR_19   2 laegdyaeAlalleqalqedpk.naearllLAeallalgqldeAea 46 
                 l++g+ya+A+++l+  l+++ +  + a ++  + +  lg++++A++
  EGE27907.1 391 LDSGRYADAIEILKP-LTKNTEiASQAHYYIGIGYERLGNPQQARE 435
                 789************.677777799999999*************98 PP

  == domain 7  score: 13.2 bits;  conditional E-value: 0.0001
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 g++++A + +e++  ++ + ++a    +  +la +++++A+++L +l +e+ +
  EGE27907.1 428 GNPQQARENFEKV-HHYEHVLDATNKVVGFYLADNNTTDAIKTLIRLRDEFEN 479
                 89**********7.999********************************9988 PP

  == domain 8  score: 17.4 bits;  conditional E-value: 4.7e-06
      TPR_19   2 laegdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpddary 61 
                 la+++ ++A++ l ++ +e  +   +++++   Ae++l +++ ++A++lL  + +e+pdd r+
  EGE27907.1 458 LADNNTTDAIKTLIRLRDEFENyatDSYILQ--AEIYLRQNNQQKAKDLLTVANREYPDDDRL 518
                 789999*********9999777322555555..**************************8664 PP

  == domain 9  score: 2.3 bits;  conditional E-value: 0.25
      TPR_19  27 arllLAeallal...gqldeAealLdalpeedpddarya 62 
                  r++LA+a l l    + d+A ++ +++ +   dd++y 
  EGE27907.1 550 PRYRLADAKLRLsqnANDDDALNTASEISNISFDDPEYD 588
                 355556665544113667899999999999999999886 PP

  == domain 10  score: 7.0 bits;  conditional E-value: 0.0082
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddary 61 
                 +lae++y++ +++l++ ++  p n+++ + L +a+  lg+ ++  +lL++l+  +++++++
  EGE27907.1 603 ALAEQNYEAVIDYLQAPYEVMP-NLNVGITLLRAYQGLGNNEAVANLLADLQSRFANSSAI 662
                 699*******************.77777788*********************999997765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.82   8.2e+02      18      31 ..     177     190 ..     160     193 .. 0.77
   2 ?    1.6   0.0       0.4     4e+02      10      33 ..     223     246 ..     215     247 .. 0.81
   3 !   11.6   0.0   0.00023      0.23       7      34 .]     285     312 ..     281     312 .. 0.92
   4 ?   -1.6   0.1       4.1   4.1e+03       2      29 ..     348     375 ..     348     377 .. 0.82
   5 ?   -0.3   0.0       1.5   1.5e+03      14      22 ..     393     401 ..     391     404 .. 0.82
   6 !   19.4   0.1   7.9e-07   0.00079       2      27 ..     415     440 ..     414     444 .. 0.93
   7 !    9.7   0.1   0.00096      0.96       3      34 .]     484     515 ..     482     515 .. 0.90
   8 ?    2.5   0.3      0.19   1.9e+02      10      29 ..     595     614 ..     594     618 .. 0.52

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.82
       TPR_2  18 eeAleafekAleld 31 
                 + A + fe+Al+l 
  EGE27907.1 177 KNATNVFERALSLS 190
                 678899****9985 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.4
       TPR_2  10 ayyklgdyeeAleafekAleldPn 33 
                 +++k+g+y++A++     l +dP+
  EGE27907.1 223 LALKAGEYNQAAAMISTILHYDPR 246
                 6899*******9988888888885 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00023
       TPR_2   7 lGlayyklgdyeeAleafekAleldPnn 34 
                 ++ +++ l dy+ A+ + ++Al+++Pnn
  EGE27907.1 285 RAGILMGLADYQAARLHVNQALSIEPNN 312
                 677899999******************8 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 4.1
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 e++ + ++ +++ gd+ +A +++ +A++
  EGE27907.1 348 ELYLYEARHLIEVGDLSQAWQLLTQAVK 375
                 5788999999999999999777777765 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 1.5
       TPR_2  14 lgdyeeAle 22 
                 +g+y++A+e
  EGE27907.1 393 SGRYADAIE 401
                 79*****98 PP

  == domain 6  score: 19.4 bits;  conditional E-value: 7.9e-07
       TPR_2   2 ealynlGlayyklgdyeeAleafekA 27 
                 +a+y++G  y++lg++++A+e fek+
  EGE27907.1 415 QAHYYIGIGYERLGNPQQARENFEKV 440
                 69**********************97 PP

  == domain 7  score: 9.7 bits;  conditional E-value: 0.00096
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                  +  ++++y+++++ ++A++++  A + +P++
  EGE27907.1 484 SYILQAEIYLRQNNQQKAKDLLTVANREYPDD 515
                 58899*****************9999999886 PP

  == domain 8  score: 2.5 bits;  conditional E-value: 0.19
       TPR_2  10 ayyklgdyeeAleafekAle 29 
                 a++ lg+++ A++ +e+++ 
  EGE27907.1 595 ALLVLGNHALAEQNYEAVID 614
                 44555555555555555543 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0041         4      11      33 ..     224     246 ..     216     257 .. 0.85
   2 !   12.0   0.1   0.00017      0.17      14      41 ..     292     319 ..     289     328 .. 0.88
   3 !    7.6   0.1    0.0038       3.8       3      22 ..     416     435 ..     414     443 .. 0.88
   4 ?   -1.4   0.0       2.6   2.6e+03      21      34 ..     536     549 ..     535     550 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0041
                 HHHHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C  11 hyklgeYseArryvdalLeiEPe 33 
                  +k geY++A   + ++L+ +P+
  EGE27907.1 224 ALKAGEYNQAAAMISTILHYDPR 246
                 579******************97 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00017
                 HT-HHHHHHHHHHHHHHTTS-HHHHHHH CS
  Fis1_TPR_C  14 lgeYseArryvdalLeiEPenrQaqsLk 41 
                 l +Y+ Ar  v++ L+iEP+n    +Lk
  EGE27907.1 292 LADYQAARLHVNQALSIEPNNLAFITLK 319
                 789******************9888887 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0038
                 HHHHHHHHHHHHT-HHHHHH CS
  Fis1_TPR_C   3 clYylAlGhyklgeYseArr 22 
                  +Yy+ +G+ +lg+ ++Ar+
  EGE27907.1 416 AHYYIGIGYERLGNPQQARE 435
                 58************999997 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2.6
                 HHHHHHHHHHTTS- CS
  Fis1_TPR_C  21 rryvdalLeiEPen 34 
                 r+ +d+lLei+  n
  EGE27907.1 536 RQAIDRLLEIDEYN 549
                 7899*****99655 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       9.3   9.2e+03      24      30 ..     183     189 ..     178     190 .. 0.81
   2 ?    0.9   0.0      0.47   4.7e+02      11      32 ..     224     245 ..     222     247 .. 0.80
   3 !    6.9   0.0    0.0058       5.7      10      34 .]     288     312 ..     284     312 .. 0.88
   4 ?   -1.7   0.0       2.9   2.9e+03      14      22 ..     393     401 ..     391     403 .. 0.87
   5 !   15.4   0.1   1.3e-05     0.012       2      27 ..     415     440 ..     414     444 .. 0.94
   6 ?    2.2   0.1      0.18   1.8e+02       3      22 ..     484     503 ..     482     506 .. 0.86
   7 ?    3.5   0.2      0.07        70      11      28 ..     596     613 ..     594     618 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9.3
                 HHHHHHH CS
       TPR_1  24 yekALel 30 
                 +e+AL+l
  EGE27907.1 183 FERALSL 189
                 99**987 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.47
                 HHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  11 yfklgkydeAleyyekALelnP 32 
                  +k g+y++A +  +  L  +P
  EGE27907.1 224 ALKAGEYNQAAAMISTILHYDP 245
                 6899******988887777777 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0058
                 HHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  10 ayfklgkydeAleyyekALelnPnn 34 
                 +++ l +y+ A  + ++AL+++Pnn
  EGE27907.1 288 ILMGLADYQAARLHVNQALSIEPNN 312
                 6777889*****************8 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 2.9
                 TT-HHHHHH CS
       TPR_1  14 lgkydeAle 22 
                  g+y +A+e
  EGE27907.1 393 SGRYADAIE 401
                 59*****98 PP

  == domain 5  score: 15.4 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekA 27 
                 +a+y +G  y +lg++++A e +ek+
  EGE27907.1 415 QAHYYIGIGYERLGNPQQARENFEKV 440
                 79**********************97 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHTT-HHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAle 22 
                 ++   + +y+++++ ++A +
  EGE27907.1 484 SYILQAEIYLRQNNQQKAKD 503
                 6888899***********87 PP

  == domain 7  score: 3.5 bits;  conditional E-value: 0.07
                 HHHTT-HHHHHHHHHHHH CS
       TPR_1  11 yfklgkydeAleyyekAL 28 
                 ++ lg++  A++ ye ++
  EGE27907.1 596 LLVLGNHALAEQNYEAVI 613
                 445666666666666554 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       2.8   2.7e+03       7      22 ..     157     172 ..     154     179 .. 0.85
   2 !    8.2   0.0     0.004       3.9       5      30 ..     222     247 ..     222     253 .. 0.89
   3 ?    1.3   0.2      0.57   5.6e+02      33      61 ..     278     306 ..     265     312 .. 0.65
   4 ?    4.2   0.2     0.072        72      19      64 ..     335     377 ..     321     381 .. 0.83
   5 !   14.3   0.0     5e-05      0.05       8      55 ..     391     435 ..     384     442 .. 0.90
   6 !   10.6   0.1   0.00069      0.69       7      67 ..     457     515 ..     457     516 .. 0.92
   7 ?    3.0   0.3      0.16   1.6e+02       5      24 ..     594     613 ..     590     619 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.8
      TPR_16   7 alragdyddAaaalea 22 
                 a+++gd ++A++ ++a
  EGE27907.1 157 AADRGDIRRALNIYKA 172
                 6789999999998864 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.004
      TPR_16   5 raalragdyddAaaaleaalkrdpss 30 
                 ++al+ag+y +Aaa+  + l +dp+s
  EGE27907.1 222 HLALKAGEYNQAAAMISTILHYDPRS 247
                 689********************654 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.57
      TPR_16  33 aaeAllllgdaalrqgrlaeAaalyraal 61 
                 +a  + l++ ++  + ++++A+  ++ al
  EGE27907.1 278 NASISVLRAGILMGLADYQAARLHVNQAL 306
                 66667777777777777777777777766 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.072
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 +l++a+k+    P   e +l+ ++ + + g+l  A +l+  a+++ 
  EGE27907.1 335 YLHQARKQL---PKEKELYLYEARHLIEVGDLSQAWQLLTQAVKNT 377
                 678888888...8888899999999999999999988888888765 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 5e-05
      TPR_16   8 lragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaa 55 
                 l++g+y+dA++ l+ ++k+      a +A+++ g  + r+g+ + A++
  EGE27907.1 391 LDSGRYADAIEILKPLTKNT---EIASQAHYYIGIGYERLGNPQQARE 435
                 89******************...*********************9986 PP

  == domain 6  score: 10.6 bits;  conditional E-value: 0.00069
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +l+ ++ +dA++ l ++++ + +   a +++ l ++++lrq++ ++A +l+  a r++pd+
  EGE27907.1 457 YLADNNTTDAIKTLIRLRDEF-ENY-ATDSYILQAEIYLRQNNQQKAKDLLTVANREYPDD 515
                 688899***************.444.9********************99999999999998 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.16
      TPR_16   5 raalragdyddAaaaleaal 24 
                 +a+l +g+ + A+  +ea++
  EGE27907.1 594 DALLVLGNHALAEQNYEAVI 613
                 45555666666666666555 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.6   1.6e+03      25      49 ..     147     173 ..     143     186 .. 0.77
   2 ?    2.8   0.1      0.14   1.4e+02      46      79 ..     203     237 ..     170     240 .. 0.81
   3 !   15.6   0.5   1.4e-05     0.014      26      80 ..     349     404 ..     293     440 .. 0.69
   4 !   10.1   0.3   0.00074      0.74       3      63 ..     461     521 ..     459     545 .. 0.77
   5 ?   -1.3   0.1       2.6   2.6e+03       7      55 ..     569     625 ..     563     650 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.6
                 HHHHH..HHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  25 dayll..AlclylngqykrAyellrka 49 
                 d+y+l  A+    +g+  rA+++++  
  EGE27907.1 147 DLYALmdAEFAADRGDIRRALNIYKAE 173
                 566666688889999999999999876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.14
                 HHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  46 lrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 +  + + n+ ++ +++   + +lk ++y++A a +
  EGE27907.1 203 ATAWqDRNPDHIPAWFYVTHLALKAGEYNQAAAMI 237
                 45555678899999999999999999999999876 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 1.4e-05
                 HHHH.HHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  26 ayll.AlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 +yl+ A  l + g+  +A +ll +a +n +++ + +l++ + l+ ++y +Ai +L+
  EGE27907.1 349 LYLYeARHLIEVGDLSQAWQLLTQAVKNTQDKDIILLAGLVGLDSGRYADAIEILK 404
                 55555666666666666666666665555555555555566666666666666554 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.00074
                 T-HHHHHHHHHHHH..HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHH CS
      ANAPC3   3 nnyknAiflaerll.aaetespedayllAlclylngqykrAyellrka.klnskslgcrylfA 63 
                 nn+ +Ai  + rl  + e++  ++  l A+ ++++++ ++A +ll  a ++++ +   r+l+A
  EGE27907.1 461 NNTTDAIKTLIRLRdEFENYATDSYILQAEIYLRQNNQQKAKDLLTVAnREYPDD--DRLLYA 521
                 7888999999999944777888888888******************994444444..455555 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 2.6
                 HHHHHHHHHH.........HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC- CS
      ANAPC3   7 nAiflaerll.......a.aetespedayllAlclylngqykrAyellrkaklnsks 55 
                 +A+  a+ +        +  ++  +++++ l+   +  ++y+  +++l+   +   +
  EGE27907.1 569 DALNTASEISnisfddpEyDSQLQLDALLVLGNHALAEQNYEAVIDYLQAPYEVMPN 625
                 555555555533333332223333444555677777777787777777776444455 PP

>> PknG_TPR  Protein kinase G tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       4.7   4.7e+03     133     155 ..     219     241 ..     197     245 .. 0.71
   2 !    9.9   0.1   0.00028      0.28      84     125 ..     337     378 ..     312     381 .. 0.76
   3 !   10.1   0.0   0.00024      0.24      88     156 ..     374     442 ..     372     445 .. 0.92
   4 ?    0.0   0.0      0.27   2.7e+02      89     123 ..     621     655 ..     591     659 .. 0.65

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 4.7
                 HHHHHHHHHT-HHHHHHHHHHHH CS
    PknG_TPR 133 yrglaeLlegdyeeAaaeFdevl 155
                 y    +L +g+y++Aaa   ++l
  EGE27907.1 219 YVTHLALKAGEYNQAAAMISTIL 241
                 55666777778887777666555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00028
                 ------GCC-SHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH- CS
    PknG_TPR  84 eadgvdaseslevpLaevrahldlGdveearelLdeleeeve 125
                 ++ + ++ ++ e+ L e+r  +++Gd ++a +lL++  ++++
  EGE27907.1 337 HQARKQLPKEKELYLYEARHLIEVGDLSQAWQLLTQAVKNTQ 378
                 3444568999*************************9877665 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00024
                 --GCC-SHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHT-HHHHHHHHHHHHH CS
    PknG_TPR  88 vdaseslevpLaevrahldlGdveearelLdeleeeveedWrldWyrglaeLlegdyeeAaaeFdevla 156
                 v+ +++ ++ L +  + ld G  ++a e+L+ l++++e   + ++y g+     g+ ++A+++F++v++
  EGE27907.1 374 VKNTQDKDIILLAGLVGLDSGRYADAIEILKPLTKNTEIASQAHYYIGIGYERLGNPQQARENFEKVHH 442
                 56677888889999999**************************************************86 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.27
                 -GCC-SHHHHHHHHHHHHCT-HHHHHHHHHHHHHH CS
    PknG_TPR  89 daseslevpLaevrahldlGdveearelLdeleee 123
                 ++  +l+v +++ ra   lG+ e++++lL++l+++
  EGE27907.1 621 EVMPNLNVGITLLRAYQGLGNNEAVANLLADLQSR 655
                 34445667777788888888888888888877765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   2.4       1.3   1.3e+03       8      26 ..     154     172 ..     146     225 .. 0.71
   2 ?   -0.7   0.0       3.6   3.6e+03       8      34 ..     221     247 ..     214     253 .. 0.74
   3 ?    5.7   0.0     0.033        33       7      39 ..     285     317 ..     281     322 .. 0.88
   4 !    8.0   0.5     0.006         6       9      43 ..     321     355 ..     316     356 .. 0.91
   5 ?    3.5   0.1      0.17   1.7e+02       3      30 ..     349     376 ..     347     388 .. 0.80
   6 ?    1.6   0.0      0.65   6.4e+02       7      26 ..     386     405 ..     381     411 .. 0.79
   7 !    7.4   0.0    0.0095       9.4       2      26 ..     415     439 ..     414     442 .. 0.89
   8 ?    1.2   0.0      0.91   9.1e+02       8      33 ..     454     479 ..     447     483 .. 0.81
   9 !    7.7   0.2    0.0074       7.4       6      43 ..     487     524 ..     482     525 .. 0.89
  10 ?    0.7   0.2       1.3   1.3e+03       9      40 ..     524     555 ..     518     563 .. 0.73
  11 ?    1.3   0.2      0.83   8.2e+02       3      25 ..     595     617 ..     590     622 .. 0.62
  12 ?    0.2   0.1       1.8   1.8e+03       7      35 ..     632     660 ..     630     663 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.3
      TPR_14   8 aeallalGdpdeAiallrr 26 
                 ae+ + +Gd ++A++++++
  EGE27907.1 154 AEFAADRGDIRRALNIYKA 172
                 5666667777777777764 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 3.6
      TPR_14   8 aeallalGdpdeAiallrralalaPdd 34 
                  ++ l +G++ +A+a+   +l  +P +
  EGE27907.1 221 THLALKAGEYNQAAAMISTILHYDPRS 247
                 5677899******99998887666655 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.033
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawl 39 
                 +a +l+ l d+++A+ + ++al+  P+++++ +
  EGE27907.1 285 RAGILMGLADYQAARLHVNQALSIEPNNLAFIT 317
                 7889999*********************98765 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.006
      TPR_14   9 eallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++l+a+ ++de  ++l++a ++ P++ e++l+ a+
  EGE27907.1 321 DILRAANQLDELWNYLHQARKQLPKEKELYLYEAR 355
                 6799************************9998665 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.17
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                 ++l  a+ l + Gd+ +A +ll +a++ 
  EGE27907.1 349 LYLYEARHLIEVGDLSQAWQLLTQAVKN 376
                 66777999*****************883 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.65
      TPR_14   7 laeallalGdpdeAiallrr 26 
                 ++ + l +G++++Ai++l+ 
  EGE27907.1 386 AGLVGLDSGRYADAIEILKP 405
                 56667899********9985 PP

  == domain 7  score: 7.4 bits;  conditional E-value: 0.0095
      TPR_14   2 eallalaeallalGdpdeAiallrr 26 
                 +a++ ++  +++lG+p++A++ +++
  EGE27907.1 415 QAHYYIGIGYERLGNPQQARENFEK 439
                 589999**************98887 PP

  == domain 8  score: 1.2 bits;  conditional E-value: 0.91
      TPR_14   8 aeallalGdpdeAiallrralalaPd 33 
                 + ++la  ++ +Ai+ l r+ + + +
  EGE27907.1 454 VGFYLADNNTTDAIKTLIRLRDEFEN 479
                 6799************9998776665 PP

  == domain 9  score: 7.7 bits;  conditional E-value: 0.0074
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 + ae++l++ + ++A +ll  a + +Pdd++++++  q
  EGE27907.1 487 LQAEIYLRQNNQQKAKDLLTVANREYPDDDRLLYASFQ 524
                 679***************************99987665 PP

  == domain 10  score: 0.7 bits;  conditional E-value: 1.3
      TPR_14   9 eallalGdpdeAiallrralalaPddaeawll 40 
                 ++l++  +p++ +++ +r+l+ +  +++++l+
  EGE27907.1 524 QLLENELEPQDKRQAIDRLLEIDEYNPRYRLA 555
                 45555557888899999999999999998876 PP

  == domain 11  score: 1.3 bits;  conditional E-value: 0.83
      TPR_14   3 allalaeallalGdpdeAiallr 25 
                 all l+   la +++++ i++l+
  EGE27907.1 595 ALLVLGNHALAEQNYEAVIDYLQ 617
                 55556666666666666666655 PP

  == domain 12  score: 0.2 bits;  conditional E-value: 1.8
      TPR_14   7 laeallalGdpdeAiallrralalaPdda 35 
                 l++a+  lG+ ++ ++ll ++ +++ ++ 
  EGE27907.1 632 LLRAYQGLGNNEAVANLLADLQSRFANSS 660
                 78999999**********99988887665 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.96   9.6e+02      17      31 ..     176     190 ..     165     190 .. 0.80
   2 ?    0.2   0.0       1.2   1.2e+03       7      27 ..     267     287 ..     266     290 .. 0.86
   3 !    8.7   0.0    0.0022       2.2       6      34 .]     284     312 ..     279     312 .. 0.90
   4 ?    0.9   0.0      0.69   6.9e+02       6      25 ..     385     404 ..     381     405 .. 0.84
   5 ?    4.7   0.0     0.043        43      11      27 ..     424     440 ..     415     440 .. 0.90
   6 ?    5.2   0.0     0.029        29       2      22 ..     483     503 ..     482     513 .. 0.91
   7 ?    1.5   0.0      0.44   4.4e+02      14      29 ..     599     614 ..     591     615 .. 0.86
   8 ?   -1.3   0.0       3.5   3.5e+03       7      18 ..     632     643 ..     630     644 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.96
                 HHHHHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekaleld 31 
                 +++A  ++e+al+l+
  EGE27907.1 176 KKNATNVFERALSLS 190
                 689999******985 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyeka 27 
                 l ++++ lg+ ++++++++  
  EGE27907.1 267 LLYALQGLGENNASISVLRAG 287
                 678999**********99875 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0022
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpdn 34 
                 + + i++ l dy++A    ++al+++p+n
  EGE27907.1 284 LRAGILMGLADYQAARLHVNQALSIEPNN 312
                 677899*********************97 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.69
                 HHHHHHHHTT-HHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyye 25 
                 + g++ l+ g+y  A+e ++
  EGE27907.1 385 LAGLVGLDSGRYADAIEILK 404
                 66788899*********985 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.043
                 HHHTT-HHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyeka 27 
                 y+ lg+ ++A e +ek+
  EGE27907.1 424 YERLGNPQQARENFEKV 440
                 99*************96 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.029
                 CHHHHHHHHHHHTT-HHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAke 22 
                 ++y + + iyl +++ ++Ak 
  EGE27907.1 483 DSYILQAEIYLRQNNQQKAKD 503
                 6899***************97 PP

  == domain 7  score: 1.5 bits;  conditional E-value: 0.44
                 TT-HHHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekale 29 
                 lg++  A++ ye +++
  EGE27907.1 599 LGNHALAEQNYEAVID 614
                 8***********9986 PP

  == domain 8  score: -1.3 bits;  conditional E-value: 3.5
                 HHHHHHHTT-HH CS
       TPR_8   7 lgsiylklgdye 18 
                 l ++y+ lg+ e
  EGE27907.1 632 LLRAYQGLGNNE 643
                 7789*****988 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2       3.7   3.7e+03       4      24 ..     149     171 ..     148     172 .. 0.71
   2 ?   -0.5   0.0       2.5   2.5e+03      10      33 .]     224     247 ..     216     247 .. 0.77
   3 ?   -1.9   0.0       6.8   6.8e+03      14      24 ..     394     404 ..     384     408 .. 0.83
   4 !   13.6   0.0     8e-05      0.08       1      26 [.     415     440 ..     415     443 .. 0.94
   5 ?    1.9   0.1      0.42   4.2e+02      10      30 ..     457     477 ..     456     480 .. 0.83
   6 !   13.2   0.2   0.00011      0.11       3      32 ..     485     514 ..     483     515 .. 0.91
   7 ?   -2.1   0.0       8.2   8.1e+03       4      20 ..     552     571 ..     551     577 .. 0.65
   8 ?   -1.8   0.1       6.4   6.4e+03      13      28 ..     599     614 ..     590     615 .. 0.79
   9 ?   -1.8   0.0       6.8   6.7e+03       9      33 .]     635     659 ..     634     659 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.7
                 HHHHHHHHHH..HHHHHHHHHHH CS
       TPR_6   4 yklalsyrkl..gdtdkAleale 24 
                 y l  + +++  gd ++Al +++
  EGE27907.1 149 YALMDAEFAAdrGDIRRALNIYK 171
                 5566666655668999**99996 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6  10 yrklgdtdkAlealerlikeYPdS 33 
                  +k+g++ +A ++   ++   P S
  EGE27907.1 224 ALKAGEYNQAAAMISTILHYDPRS 247
                 45667*****99988888888876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 6.8
                 HHHHHHHHHHH CS
       TPR_6  14 gdtdkAleale 24 
                 g++++A+e+l+
  EGE27907.1 394 GRYADAIEILK 404
                 799*****985 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 8e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerl 26 
                 +A y+++  y++lg++++A+e +e++
  EGE27907.1 415 QAHYYIGIGYERLGNPQQARENFEKV 440
                 699*********************98 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.42
                 HHHHHHHHHHHHHHHHHHHH- CS
       TPR_6  10 yrklgdtdkAlealerlikeY 30 
                 y++ ++t++A+++l rl++e+
  EGE27907.1 457 YLADNNTTDAIKTLIRLRDEF 477
                 455469************998 PP

  == domain 6  score: 13.2 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPd 32 
                 + ++a+ y+++++ +kA+++l    +eYPd
  EGE27907.1 485 YILQAEIYLRQNNQQKAKDLLTVANREYPD 514
                 6689*************************9 PP

  == domain 7  score: -2.1 bits;  conditional E-value: 8.2
                 HHHHHHHHHH...HHHHHHH CS
       TPR_6   4 yklalsyrkl...gdtdkAl 20 
                 y+la + ++l    + d+Al
  EGE27907.1 552 YRLADAKLRLsqnANDDDAL 571
                 88888888765543555555 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 6.4
                 HHHHHHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAlealerlik 28 
                 lg+++ A + +e +i+
  EGE27907.1 599 LGNHALAEQNYEAVID 614
                 5899999999999987 PP

  == domain 9  score: -1.8 bits;  conditional E-value: 6.8
                 HHHHHHHHHHHHH.HHHHHHHH-TT- CS
       TPR_6   9 syrklgdtdkAle.alerlikeYPdS 33 
                 +y+ lg+  +A++ +l +l +++ +S
  EGE27907.1 635 AYQGLGNN-EAVAnLLADLQSRFANS 659
                 56666444.56666999999999987 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.074        73      44      74 ..     279     308 ..     264     311 .. 0.57
   2 ?    3.2   0.3      0.11   1.1e+02      45      73 ..     347     375 ..     322     379 .. 0.84
   3 !   10.3   0.1   0.00064      0.64      39      71 ..     408     440 ..     382     441 .. 0.71
   4 !    8.8   0.2     0.002       1.9       5      69 ..     449     506 ..     445     508 .. 0.82
   5 ?    2.5   0.1      0.19   1.9e+02      13      31 ..     596     614 ..     563     622 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.074
      TPR_12  44 tattlrnLgrlyralgryeeAlelleealai 74 
                 ++++    g+l  ++ +y++A+ + ++al i
  EGE27907.1 279 ASISVLRAGILMGLA-DYQAARLHVNQALSI 308
                 444444455555333.666666666666654 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.11
      TPR_12  45 attlrnLgrlyralgryeeAlelleeala 73 
                  + +   +r + + g++ +A++ll++a++
  EGE27907.1 347 KELYLYEARHLIEVGDLSQAWQLLTQAVK 375
                 56677778889999************987 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00064
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlelleea 71 
                 ++ + ++++ + +g+ y++lg++++A+e +e++
  EGE27907.1 408 KNTEIASQAHYYIGIGYERLGNPQQARENFEKV 440
                 667777888888888888888888888888875 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.002
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69 
                 a n++  ++++  + ++A++ l + ++ +     +++  +  +++  +++y++++++++A +ll+
  EGE27907.1 449 ATNKVVGFYLADNNTTDAIKTLIRLRDEF-----ENY--ATDSYILQAEIYLRQNNQQKAKDLLT 506
                 55567788899999999999999998888.....444..5679******************9986 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.19
      TPR_12  13 lrrlgrydeAlellekale 31 
                 l+ lg+++ A++++e++++
  EGE27907.1 596 LLVLGNHALAEQNYEAVID 614
                 4445666666666665544 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.092        91      26      70 ..     260     304 ..     251     314 .. 0.87
   2 !    9.1   0.1   0.00094      0.93      23      76 ..     325     378 ..     313     383 .. 0.84
   3 ?    1.0   0.0      0.32   3.2e+02      49      75 ..     384     410 ..     379     418 .. 0.79
   4 ?   -3.1   0.0       5.6   5.6e+03      64      96 ..     538     570 ..     531     586 .. 0.69
   5 ?   -2.8   0.0       4.7   4.7e+03      27      53 ..     586     612 ..     563     618 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.092
  HrpB1_HrpK  26 dtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLre 70 
                 + ed  +lL al+ L  ++a + +l + +l+   +++ A+   ++
  EGE27907.1 260 KREDKRALLYALQGLGENNASISVLRAGILMGLADYQAARLHVNQ 304
                 568999******************************999877665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00094
  HrpB1_HrpK  23 asedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLreveaeas 76 
                 a+++ +++ + L+  r   P+ +el l+e+  lie g+++ A +lL +  ++++
  EGE27907.1 325 AANQLDELWNYLHQARKQLPKEKELYLYEARHLIEVGDLSQAWQLLTQAVKNTQ 378
                 5677788888899999999***************************98876655 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.32
  HrpB1_HrpK  49 llegvlliergrweeAlrlLreveaea 75 
                 ll g++ +  gr+++A+ +L+ + +++
  EGE27907.1 384 LLAGLVGLDSGRYADAIEILKPLTKNT 410
                 67788888999*********9998665 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 5.6
  HrpB1_HrpK  64 AlrlLreveaeasgtpyakaLlAlcLaalrDee 96 
                 A+  L e+++ +++  +a a l l ++a +D++
  EGE27907.1 538 AIDRLLEIDEYNPRYRLADAKLRLSQNANDDDA 570
                 666666777777777777777777777766654 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 4.7
  HrpB1_HrpK  27 tedaellLdalrvLrPevaeldllegv 53 
                  +d +l Ldal vL  ++ + + +e+v
  EGE27907.1 586 EYDSQLQLDALLVLGNHALAEQNYEAV 612
                 556666666666666665555555555 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         4     4e+03      79      99 ..     150     170 ..     147     189 .. 0.64
   2 ?   -2.4   0.0       3.3   3.3e+03      77     105 ..     215     243 ..     168     254 .. 0.61
   3 ?   14.2   0.4   2.7e-05     0.027      75     172 ..     346     440 ..     282     454 .. 0.84
   4 ?    4.7   1.0     0.022        22      52     136 ..     460     542 ..     440     548 .. 0.73
   5 ?    3.2   5.6     0.063        63      49     178 ..     492     618 ..     476     627 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4
      TPR_21  79 aLllAkaaveagdlaaAkaqL 99 
                 aL+ A+ a+++gd+ +A + +
  EGE27907.1 150 ALMDAEFAADRGDIRRALNIY 170
                 667777777777777665544 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.3
      TPR_21  77 laaLllAkaaveagdlaaAkaqLewvlek 105
                  a + +++ a +ag++++A+a ++ +l+ 
  EGE27907.1 215 PAWFYVTHLALKAGEYNQAAAMISTILHY 243
                 45666777777777777777777666655 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 2.7e-05
      TPR_21  75 aalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLea.kkeeafaalvaelrGDilvaqgkldeAraaYqaA 172
                  +   L  A++ +e gdl +A + L++++++++d+++  la l    v l+ + y++A++ L+  +k+ + a+++    G  + + g+ ++Ar+ +++ 
  EGE27907.1 346 EKELYLYEARHLIEVGDLSQAWQLLTQAVKNTQDKDIILLAGL----VGLDSGRYADAIEILKPlTKNTEIASQAHYYIGIGYERLGNPQQARENFEKV 440
                 55567999***************************99888877....89*************8625566778888888999999999999999999875 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.022
      TPR_21  52 akdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktL 136
                 ++++++a +   +l de++  +Ya  + +l+A+    +++ ++Ak  L+ +  + +d++    a+ +L +  l+ ++  +A+ +L
  EGE27907.1 460 DNNTTDAIKTLIRLRDEFE--NYATDSYILQAEIYLRQNNQQKAKDLLTVANREYPDDDRLLYASFQLLENELEPQDKRQAIDRL 542
                 5555555666666777765..5999999999999999999999999999999998888877777777777777777777776665 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.063
      TPR_21  49 aveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeeafaal 147
                  +++++++kak++ +  + ey++     +a+++l +++ e +d  +A  +L ++ e ++   l++ a+lRL +    + + d+Al+t ++ ++ +f+  
  EGE27907.1 492 YLRQNNQQKAKDLLTVANREYPDDDRLLYASFQLLENELEPQDKRQAIDRLLEIDEYNPRYRLAD-AKLRLSQ----NANDDDALNTASEISNISFDDP 585
                 4678999999*****************************************99888887776666.7888764....5566788888888888888764 PP

      TPR_21 148 v..aelrGDilvaqgkldeAraaYqaAlaalee 178
                    ++l+ D+l+  g+ + A + Y+a ++ l++
  EGE27907.1 586 EydSQLQLDALLVLGNHALAEQNYEAVIDYLQA 618
                 411467889***************999887765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.8   7.9e+02      11      24 ..     159     172 ..     154     194 .. 0.81
   2 ?   -1.2   0.0       2.8   2.8e+03       7      21 ..     222     236 ..     216     247 .. 0.69
   3 ?   -0.7   0.0       1.9   1.9e+03      10      32 ..     358     378 ..     351     382 .. 0.79
   4 ?    1.1   0.0      0.51   5.1e+02      11      22 ..     392     403 ..     391     404 .. 0.85
   5 ?    7.7   0.1     0.004         4       1      27 [.     416     440 ..     416     451 .. 0.87
   6 ?   -2.7   0.0       8.5   8.5e+03       9      23 ..     457     471 ..     456     473 .. 0.81
   7 ?    4.3   0.1     0.048        48       3      23 ..     486     506 ..     484     535 .. 0.86
   8 ?    1.2   0.2      0.48   4.8e+02       1      24 [.     595     618 ..     595     621 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.8
       TPR_7  11 rlGdyeeAielyeq 24 
                 ++Gd ++A+ +y++
  EGE27907.1 159 DRGDIRRALNIYKA 172
                 68999999999987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.8
       TPR_7   7 rlysrlGdyeeAiel 21 
                 +l  + G+y +A+  
  EGE27907.1 222 HLALKAGEYNQAAAM 236
                 555678999999876 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.9
       TPR_7  10 srlGdyeeAielyeqsLaltkdp 32 
                  ++Gd ++A +l++q  a+ + +
  EGE27907.1 358 IEVGDLSQAWQLLTQ--AVKNTQ 378
                 5789***********..877665 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.51
       TPR_7  11 rlGdyeeAiely 22 
                 + G+y++Aie++
  EGE27907.1 392 DSGRYADAIEIL 403
                 68********87 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.004
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLa 27 
                 a+++++  y+rlG+ ++A e +e+  +
  EGE27907.1 416 AHYYIGIGYERLGNPQQARENFEK--V 440
                 67899999***************9..4 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 8.5
       TPR_7   9 ysrlGdyeeAielye 23 
                 y +++++ +Ai+ + 
  EGE27907.1 457 YLADNNTTDAIKTLI 471
                 788999****99765 PP

  == domain 7  score: 4.3 bits;  conditional E-value: 0.048
       TPR_7   3 lnLarlysrlGdyeeAielye 23 
                    a++y r+++ ++A +l++
  EGE27907.1 486 ILQAEIYLRQNNQQKAKDLLT 506
                 56799***********99887 PP

  == domain 8  score: 1.2 bits;  conditional E-value: 0.48
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 aLl L++   ++++ye  i+++++
  EGE27907.1 595 ALLVLGNHALAEQNYEAVIDYLQA 618
                 677888888999999999999875 PP

>> DUF3808  Protein of unknown function (DUF3808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00059      0.59     249     306 ..     327     382 ..     311     454 .. 0.74
   2 ?    0.0   0.0      0.27   2.7e+02     109     142 ..     459     492 ..     450     516 .. 0.67
   3 ?   -3.8   0.0         4     4e+03     247     269 ..     638     660 ..     622     662 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00059
     DUF3808 249 apleeleelLlksrkrfPksalwllfearieslkgnldeAlelleeiieesqselkqv 306
                  +l+el + L ++rk+ Pk + + l+ear +   g+l +A +ll +++ ++++  k++
  EGE27907.1 327 NQLDELWNYLHQARKQLPKEKELYLYEARHLIEVGDLSQAWQLLTQAV-KNTQ-DKDI 382
                 567888999************************************998.4443.3444 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.27
     DUF3808 109 lseslvefiKgglklRkaYqiykeilkeikklek 142
                  +++ +++iK +++lR  ++ y      +++  +
  EGE27907.1 459 ADNNTTDAIKTLIRLRDEFENYATDSYILQAEIY 492
                 6889999*********999988754444443333 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4
     DUF3808 247 lkapleeleelLlksrkrfPksa 269
                 + ++ e + +lL++ ++rf +s+
  EGE27907.1 638 GLGNNEAVANLLADLQSRFANSS 660
                 568899999***********997 PP

>> DUF1039  Protein of unknown function (DUF1039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0018       1.8      11      49 ..     263     301 ..     260     316 .. 0.87
   2 ?   -0.5   0.0       1.7   1.7e+03      19      55 ..     370     408 ..     361     413 .. 0.72
   3 ?    1.9   0.1      0.31   3.1e+02      37      56 ..     636     655 ..     629     659 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0018
     DUF1039  11 eahailnaLPllipDeelrlvceAlLlfGLgetakAtal 49 
                 + +a+l aL  l +++  + v  A +l+GL + ++A+  
  EGE27907.1 263 DKRALLYALQGLGENNASISVLRAGILMGLADYQAARLH 301
                 6799********************************865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
     DUF1039  19 LPllipDeelrlvceAlLlfGL..getakAtalLadlss 55 
                 L++ + +++++ ++    l+GL  g+ a A+++L+ l++
  EGE27907.1 370 LTQAVKNTQDKDIILLAGLVGLdsGRYADAIEILKPLTK 408
                 778888888888877777788833356677778876665 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.31
     DUF1039  37 lfGLgetakAtalLadlsse 56 
                 + GLg++++ ++lLadl+s 
  EGE27907.1 636 YQGLGNNEAVANLLADLQSR 655
                 57**************9875 PP

>> DUF3799  PDDEXK-like domain of unknown function (DUF3799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.5   1.5e+03      65      85 ..     221     242 ..     198     250 .. 0.76
   2 ?   10.1   0.1   0.00051      0.51     127     204 ..     467     532 ..     447     550 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
                 .TSSB-HH.HHHHHHHHHHHHT CS
     DUF3799  65 kkgelkae.fkaaekmierlka 85 
                 ++  lka  +++a +mi ++ +
  EGE27907.1 221 THLALKAGeYNQAAAMISTILH 242
                 456789888*********9987 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00051
                 EEEES-SS--EEETTTE.EE-HHHHTTHHHHHHHHHHHHHHHHS----EEEEEEE-SSS--EEEEEE-HHHHHHHHHH CS
     DUF3799 127 lKttkdiskkkfnedaakrvsFieaygYdlQaavYqellrqktgktlefviiaveketppdkavitldqelleeglke 204
                 +Kt +++++ +f+++a +         Y+lQa +Y   lrq+ +++++ ++ ++++e p d +++ ++ +lle++l+ 
  EGE27907.1 467 IKTLIRLRD-EFENYATD--------SYILQAEIY---LRQNNQQKAKDLLTVANREYPDDDRLLYASFQLLENELEP 532
                 888888888.67766666........8********...689999999999***********************99864 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.047        47       7      32 ..     208     233 ..     202     235 .. 0.90
   2 ?   -0.8   0.1       2.6   2.6e+03       4      28 ..     304     328 ..     303     332 .. 0.65
   3 ?    1.2   0.0       0.6     6e+02      14      34 .]     415     435 ..     409     435 .. 0.87
   4 ?    5.2   0.3     0.032        32      14      33 ..     483     502 ..     478     503 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.047
      TPR_17   7 eldPnnadaynnLAelllknGdlmtA 32 
                 +++P++ +a+++   l lk+G++ +A
  EGE27907.1 208 DRNPDHIPAWFYVTHLALKAGEYNQA 233
                 78*******************99988 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.6
      TPR_17   4 kaleldPnnadaynnLAelllknGd 28 
                 +al ++Pnn  + +++  +l+ +++
  EGE27907.1 304 QALSIEPNNLAFITLKLDILRAANQ 328
                 6899999996665555555555555 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.6
      TPR_17  14 daynnLAelllknGdlmtArq 34 
                  a+++ +  ++++G++++Ar+
  EGE27907.1 415 QAHYYIGIGYERLGNPQQARE 435
                 67888888899********96 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.032
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                 d+y + Ae++l++++ ++A+
  EGE27907.1 483 DSYILQAEIYLRQNNQQKAK 502
                 899**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4556.95
//
Query:       EGE27908.1  [L=447]
Description: glutamyl-tRNA reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-41  140.6   0.0    8.8e-41  139.1   0.0    1.8  2  GlutR_N        Glutamyl-tRNAGlu reductase, N-terminal domain
    3.4e-33  114.6   0.0    9.1e-33  113.2   0.0    1.8  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
    9.5e-11   42.0   1.6    2.6e-10   40.6   1.6    1.8  1  GlutR_dimer    Glutamyl-tRNAGlu reductase, dimerisation domai
     0.0053   17.3   0.0      0.029   14.9   0.0    2.3  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.31   11.4   0.0    1.7  1  EntA_Immun     Enterocin A Immunity


Domain annotation for each model (and alignments):
>> GlutR_N  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.0   2.5e-44   8.8e-41       1     146 []       6     169 ..       6     169 .. 0.88
   2 ?   -3.4   0.2         2   7.1e+03     104     115 ..     357     368 ..     356     394 .. 0.61

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 2.5e-44
     GlutR_N   1 iginhktapvelreklafseeelkellkeleekvkeaviLsTCNRtEiy.......lsaeeee..............easeellellaevs...leelk 75 
                 ig+nhktapv+lre+l+f  +++ +++++l++  +++ i+sTCNR E+y             +              ++ +++ e+lae++    +e++
  EGE27908.1   6 IGVNHKTAPVSLRERLSFG-SDMPQAIEQLSTLANGCTIVSTCNRSELYvgivddvG-----SqhesqdeqsgglisAKLQAIGEWLAEFKgvsFDEIA 98 
                 89****************7.668999999944667**************65554431.....03345567899999888888999999996677999** PP

     GlutR_N  76 eklyvlegeeavrHlfrVasGLdSlvlGEdqIlgQvkeayelakeagtlgkvLerlfqkaikvakrvrtet 146
                 ++ly++e++ a++H++rVa+GLdS++lGE+qIlgQ+++a++l++e+g +++ +  l q+++++a+ vr +t
  EGE27908.1  99 PYLYTYEDSRALNHWLRVAAGLDSMILGEPQILGQIRQAVALSREYGGVDSDFGWLTQQVFAAARTVRRDT 169
                 ********************************************************************987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2
     GlutR_N 104 EdqIlgQvkeay 115
                 E q +gQv +++
  EGE27908.1 357 EAQMQGQVARTH 368
                 778888887654 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   2.5e-36   9.1e-33       2     138 .]     185     330 ..     184     330 .. 0.93

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 2.5e-36
                   HHHHHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E........T-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB CS
  Shikimate_DH   2 lakkkleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkge........eiealkleelkellaeadvvisataseepil 90 
                   la +++++ ++ + ll+ aGem +lva++ +a gvkk+++ NR+ era++l +el++         eie   l+ l e+l +ad+v s+ +s ++++
    EGE27908.1 185 LATQIFDDPSDLTFLLVAAGEMNRLVAHNVAALGVKKIIICNRSSERAQALSDELSEMaqqagrflEIELAGLDRLGEVLPQADIVSSCSGSMQALI 281
                   89**************************************************99977633333344577788999********************** PP

                   -HHHHHCCHHH.S...EEEEE--SS-SB-TTGGGSTTCCCEEHHHHHHH CS
  Shikimate_DH  91 ekeeveealkkrk.kplllvDiavPRdvepevaeledvrlytvDdLkev 138
                   + ++v+ alk r+ +p+llvD+avPRd++p v+++++++ly+vDdL++v
    EGE27908.1 282 DTAMVKYALKIRRhQPMLLVDLAVPRDIDPLVGQFDNIYLYSVDDLQHV 330
                   ***********999********************************997 PP

>> GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   1.6   7.3e-14   2.6e-10       1      92 [.     344     436 ..     344     439 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 7.3e-14
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S..-------.-TTHHHHHHHHHHHHHHHHHHSS.-TTTT.HHHHHHH CS
  GlutR_dimer   1 kAeaiIeeeveefeawlkslevvptIkalrekaeeireeeleralkklaldgedree.lekltrslvnkllheptarLkea.edeee.ellealr 92 
                  +Ae ++ + v+++ea+++ + +   I+++r+ ae+  +  l+ra+++++ +g+d+++ l +++++l + l+h p++ +++  +   + ++l++++
   EGE27908.1 344 EAELLVGQLVADIEAQMQGQVARTHIRDYRQMAEARTQVLLARAMAQID-QGDDAKAvLSEFSHTLSQALMHSPSRLIRQIaK-TYDaDTLDLVS 436
                  69999********************************************.******************************943.33358888875 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.1   7.4e+03      73      96 ..      26      48 ..      25      49 .. 0.83
   2 !   14.9   0.0   8.2e-06     0.029       5      51 ..     201     244 ..     197     270 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.1
                   HHHHHHHHCGHHHHTTSEEEEESS CS
  F420_oxidored 73 dveevlselakdalkgklvisvla 96
                   d+++++++l + + +g +++s+++
     EGE27908.1 26 DMPQAIEQL-STLANGCTIVSTCN 48
                   678888999.89999999999988 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 8.2e-06
                    ETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEE CS
  F420_oxidored   5 iGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvt 51 
                    ++aG+m + +a++++a g   ++i+ +++r+ e+a++l +el+  ++
     EGE27908.1 201 VAAGEMNRLVAHNVAALG--VKKII-ICNRSSERAQALSDELSEMAQ 244
                    589***************..99999.88*************985444 PP

>> EntA_Immun  Enterocin A Immunity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.7e-05      0.31      23      62 ..     380     419 ..     366     428 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.7e-05
  EntA_Immun  23 lrevLltaknklekgknvsvvasrLeqelrsyalknkikL 62 
                  + +L  a  ++++g+++++v+s+ +++l++++++    L
  EGE27908.1 380 TQVLLARAMAQIDQGDDAKAVLSEFSHTLSQALMHSPSRL 419
                 5678999**************************9776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3405.85
//
Query:       EGE27909.1  [L=553]
Description: FAD-dependent oxidoreductase FixC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-50  167.1   0.1    1.5e-49  166.4   0.1    1.3  1  ETF_QO           Electron transfer flavoprotein-ubiquinone ox
    1.1e-09   38.0   0.5    4.8e-05   22.6   1.2    2.2  2  FAD_binding_2    FAD binding domain
    4.8e-07   29.3   0.0    9.9e-05   21.7   0.1    2.2  2  Thi4             Thi4 family
    5.1e-07   29.8   0.1    2.8e-06   27.4   0.2    2.2  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    5.4e-07   29.5   0.6    3.3e-05   23.7   1.2    2.4  2  DAO              FAD dependent oxidoreductase
      5e-06   26.0   0.3      2e-05   24.0   0.1    2.0  2  FAD_binding_3    FAD binding domain
    1.9e-05   24.1   0.0    2.2e-05   23.8   0.0    1.2  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    0.00069   18.4   0.4     0.0011   17.8   0.4    1.3  1  HI0933_like      HI0933-like protein
    0.00087   18.6   0.6     0.0015   17.8   0.6    1.3  1  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
     0.0022   17.1   0.1     0.0031   16.6   0.1    1.2  1  Lycopene_cycl    Lycopene cyclase protein
     0.0027   17.7   0.2     0.0059   16.6   0.2    1.5  1  NAD_binding_9    FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.014   14.5   0.1      0.053   12.6   0.0    1.8  2  GIDA             Glucose inhibited division protein A
      0.019   14.1   0.0      0.027   13.6   0.0    1.2  1  K_oxygenase      L-lysine 6-monooxygenase (NADPH-requiring)
      0.019   15.5   1.3      0.039   14.6   1.3    1.4  1  Fer4_7           4Fe-4S dicluster domain
      0.034   13.5   1.0       0.05   12.9   1.0    1.2  1  FAD_oxidored     FAD dependent oxidoreductase
      0.089   12.9   0.7       0.21   11.7   0.7    1.6  1  Fer4_2           4Fe-4S binding domain
       0.15   12.2   0.0       0.29   11.3   0.0    1.4  1  GramPos_pilinD1  Gram-positive pilin subunit D1, N-terminal d
       0.36    9.6   1.1       0.71    8.6   0.5    1.7  2  Trp_halogenase   Tryptophan halogenase


Domain annotation for each model (and alignments):
>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.1   1.5e-52   1.5e-49       1     103 [.     449     550 ..     449     551 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 1.5e-52
                 SSSS--HHHHHHTTT-B--SSS--SEEESSTTHHHHTHHHHHS-THHHH-TTS-EEEEETTTTSSEEEEE-CCC--S--HHHHH-TT--EEE---STT- CS
      ETF_QO   1 gkltfdklssvflsgtnheedqpvhLklkdaevavkvnlekyagpeqryCPagvyeivedeeakekklqinaqnCvhCktCdikdpsqniewvvPeGgg 99 
                 gkltfdklssvf+s+tnh+edqp hL+l+d++v+v+ nl+ ya+p+qryCPagvyeiv++e  +++k++in+qnCvhCktCdikdpsqni+wv+PeGgg
  EGE27909.1 449 GKLTFDKLSSVFISNTNHAEDQPNHLRLTDPAVPVSLNLPLYAEPAQRYCPAGVYEIVQKE-GETPKFVINSQNCVHCKTCDIKDPSQNITWVTPEGGG 546
                 79********************************************************999.599********************************** PP

                 C--- CS
      ETF_QO 100 GPky 103
                 GP+y
  EGE27909.1 547 GPNY 550
                 **** PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   1.2   4.8e-08   4.8e-05       1      38 [.      11      55 ..      11      62 .. 0.81
   2 !   12.5   0.0   5.6e-05     0.056     129     204 ..     108     195 ..      63     215 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.8e-08
                   SEEEE--SHHHHHHHHHHHH....TTT...-EEEEESSSGGGSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae....aGl...kvavvekeqefggat 38
                   Dvi++G+G AGL+AA+++++    aG    +v+v+ek++efg +t
     EGE27909.1 11 DVIIVGGGPAGLSAAIRLRQlaiaAGMdefTVCVIEKGSEFGAHT 55
                   9***************987643334432248*********99987 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.6e-05
                    STT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEE.CTTEEEEEEEEET......TTTCEE....EEEESEEEE-----GG CS
  FAD_binding_2 129 aadarr.etlvtghallarlvesarkagvdfqerteadeLiv.edgrvtGavvenp......esgrev....rirakavvlatgGfgr 204
                     + +++ + +v+  +++  l+e+a++++v ++++ +a ++++ edg v+G+v  ++      e ++ +    ++ ak ++ a+g  g+
     EGE27909.1 108 SSMHNDgNYIVSLGNVVRWLAEQAESLEVMMFPSFAASDVLYhEDGSVRGVVTGDMglnaqgEPKNSFepgyELLAKYTIFAEGCRGH 195
                    455556688999999***********************98884689******999999866533333367778899999999999997 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   9.9e-08   9.9e-05      14      60 ..       6      58 ..       1      71 [. 0.75
   2 !    5.4   0.0    0.0093       9.3      98     184 ..     122     208 ..      88     238 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 9.9e-08
                HHTEEEEEEE--SHHHHHHHHHH.....HHC.TTS-EEEEESSSS--TTTTTT CS
        Thi4 14 kyaesDvvivGaGssGLtaayyl.....akk.pdlkvailersvspGGGawlG 60
                + +e Dv+ivG+G++GL+aa  l     a    ++ v+++e+   +G  +  G
  EGE27909.1  6 DSMEFDVIIVGGGPAGLSAAIRLrqlaiAAGmDEFTVCVIEKGSEFGAHTLSG 58
                6799****************6542221133356899*****988888665554 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0093
                 HHHHHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEEHHHHTCTTTSS.-B-E.EEEEEEEEE--GSSSTTTTHHHHHHHHCT CS
        Thi4  98 lftstllskvlqlanvkllnavaveDlivregegvaGvvinwtlvelahdtqscvDPl.virakvvvdatGhdgeivavvvkkiklea 184
                  ++  l+ ++    +v ++ + a+ D++ +e+ +v+Gvv+  + ++ + + +   +P   + ak  + a G  g++++ ++ + +l +
  EGE27909.1 122 NVVRWLAEQAES-LEVMMFPSFAASDVLYHEDGSVRGVVTGDMGLNAQGEPKNSFEPGyELLAKYTIFAEGCRGHLGKRLISRFHLDK 208
                 444445444444.67999**********************999998887778888885157778888888888888887777765443 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2   2.8e-09   2.8e-06       1      40 [.      14      60 ..      14      72 .. 0.84
   2 ?   -2.0   0.0       4.3   4.3e+03      41      55 ..     298     312 ..     293     317 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.8e-09
                   EE--SHHHHHHHHHHHC....C...TEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLak....a...gfdvlllekrdrlGGraasyev 40
                   IvG+G +Gl+aA +L++    a    f v ++ek++ +G +  s  v
     EGE27909.1 14 IVGGGPAGLSAAIRLRQlaiaAgmdEFTVCVIEKGSEFGAHTLSGAV 60
                   9***************966652444889*************999866 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.3
                    TTCEECTS---EEET CS
  NAD_binding_8  41 pgvrvdygahifhgs 55 
                    +g r+ yga++++++
     EGE27909.1 298 GGKRLSYGARALTKG 312
                    568999****99875 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   1.2   3.3e-08   3.3e-05       1      37 [.      11      56 ..      11      62 .. 0.83
   2 ?    2.5   0.0     0.086        86     114     187 ..      90     162 ..      62     200 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.3e-08
                EEEEECTSHHHHHHHHHHHHT....T.....EEEEESSSSTTSSGG CS
         DAO  1 dvviiGGGiiGlstAyeLarr....g.....VtllekgdiagsgaS 37
                dv+i+GGG +Gls+A  L +     g     V+++ekg+++g ++ 
  EGE27909.1 11 DVIIVGGGPAGLSAAIRLRQLaiaaGmdeftVCVIEKGSEFGAHTL 56
                9*****************43234346899************97764 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.086
                 EEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEE.EEEETCEEEEEEECT CS
         DAO 114 elldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgl.eeedgkvwgverttp 187
                 ++l++e+     p ++ +  ++++++  +v    ++++la++ae+l v ++    + ++  +edg v gv +t +
  EGE27909.1  90 YMLTSEKGSTALP-SSIVPSSMHNDGNYIVSLGNVVRWLAEQAESLEVMMFPSFAASDVlYHEDGSVRGV-VTGD 162
                 4555552223333.2245588999999999******************9999999999535567889998.4433 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1     2e-08     2e-05       2      53 ..      10      69 ..       9     213 .. 0.59
   2 ?   -3.8   0.0       5.9   5.9e+03     288     318 ..     327     357 ..     326     372 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2e-08
                   EEEEEE--SHHHHHHHHHHHHTTHH.......EEEEESSSSSCCSS.S--EEEHHHHHHH CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvr.......vvlvekrsttvvlp.radglnqrtmell 53
                    dV+IVG+GpaGl++a  L++  +        v+++ek s+   ++  + ++++r ++ l
     EGE27909.1 10 FDVIIVGGGPAGLSAAIRLRQLAIAagmdeftVCVIEKGSEFGAHTlSGAVIETRALDEL 69
                   79******************988878888***********99888878899999998533 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.9
                    E-GGGTEEE-STTSHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 288 laGDAaHihpPtgGqGlNtaiqDavnLawkL 318
                    l+GD a    P++ +G  t+++  +  a  +
     EGE27909.1 327 LVGDDAGFLNPAKIKGTHTSMKSGMLAAESI 357
                    7899999999999999999998777666555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.3e-08   2.2e-05       1      35 [.      10      51 ..      10     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.3e-08
                 CSEEEE--SHHHHHHHHHHHH.......HTS-EEEEETTHCH CS
                 xxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaq.......agakvtlvelegtc 35
                 +dv+++GgGpAGl+aa++l+q        ++ v ++e++ ++
   EGE27909.1 10 FDVIIVGGGPAGLSAAIRLRQlaiaagmDEFTVCVIEKGSEF 51
                 69*******************999877778888888733332 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   1.1e-06    0.0011       1      37 [.      10      53 ..      10      58 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.1e-06
                 -SEEEE--SHHHHHHHHHH.......HHTT--EEEE-SSSSS-H CS
  HI0933_like  1 kdviviGgGaAGlmaAisa.......akrgkrVlllekakklgr 37
                 +dvi++GgG+AGl aAi++       +  +  V ++ek++++g 
   EGE27909.1 10 FDVIIVGGGPAGLSAAIRLrqlaiaaGMDEFTVCVIEKGSEFGA 53
                 59*************99874444333567789999999999986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.6   1.5e-06    0.0015       1      30 [.      13      48 ..      13      56 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.5e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagl......edylilEkg 30
                 iI+G+GPaGl+aai l+++ +       +++++Ekg
   EGE27909.1 13 IIVGGGPAGLSAAIRLRQLAIaagmdeFTVCVIEKG 48
                 8****************9988444433256788888 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.1e-06    0.0031       1      35 [.      11      50 ..      11      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarl.....teakpglkvvlieasps 35
                   Dv+++G+GpAgls A rl     ++   +  v++ie + +
     EGE27909.1 11 DVIIVGGGPAGLSAAIRLrqlaiAAGMDEFTVCVIEKGSE 50
                   9****************98877667777889999998866 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   5.9e-06    0.0059       2      39 ..      14      54 ..      13      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.9e-06
  NAD_binding_9  2 ivGaGprGlavlerLlara..kkkspleitlfdp.sepgag 39
                   ivG+Gp+Gl+++ rL + a  +  +++++ ++++ se+ga 
     EGE27909.1 14 IVGGGPAGLSAAIRLRQLAiaAGMDEFTVCVIEKgSEFGAH 54
                   9******************9888899********8888954 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.3e-05     0.053       1      23 [.      11      33 ..      11      96 .. 0.89
   2 ?   -0.8   0.0      0.63   6.3e+02     190     272 ..     415     500 ..     407     536 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.3e-05
                CEEEE-SSHHHHHHHHHHHHTT- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGa 23
                dvi++GgG AG+ AA+ + +l +
  EGE27909.1 11 DVIIVGGGPAGLSAAIRLRQLAI 33
                7***************9988765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.63
                 EEEEE--EEEGGGS-TTTSEEE---SS-B-SSSSSSSTC.G----EEEEE--HHHHHHHHCTCCC-T.T----...B--S-CCC-SS CS
        GIDA 190 lktgtppridkesidfskleeqsgdkegeefsylnkpln.keqvecfltatneathkiikenlkksaklfegc...ieelgprycps 272
                 + + +p +i+ ++ d+s+l +++   +++     + +l+ ++  + f+++tn+a+ +  +  l++ a  ++     + e ++rycp 
  EGE27909.1 415 FGGKMPLTIHDNTPDYSTLDKADHAYKPN-YPKPDGKLTfDKLSSVFISNTNHAEDQPNHLRLTDPAVPVSLNlplYAEPAQRYCPA 500
                 55567889999999999999999884343.233344444255556899999999999888888854423332246677778888876 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.7e-05     0.027       3      43 ..      10      55 ..       8      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.7e-05
  K_oxygenase  3 lDligiGiGpsnLsLailleevk.....kelkalflerqpefaWhp 43
                 +D+i++G Gp+ Ls ai+l++ +     +e++++++e+ +ef+ h+
   EGE27909.1 10 FDVIIVGGGPAGLSAAIRLRQLAiaagmDEFTVCVIEKGSEFGAHT 55
                 8********************99999999*************9884 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.3   3.9e-05     0.039      10      44 ..     496     528 ..     495     531 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.9e-05
      Fer4_7  10 aaCpvkaieldeeenekgtekveidpekClgCgaC 44 
                 ++Cp+++ e+ ++  e +t+k +i++++C++C+ C
  EGE27909.1 496 RYCPAGVYEIVQK--EGETPKFVINSQNCVHCKTC 528
                 68********887..55678*************** PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0     5e-05      0.05       1      17 [.      11      27 ..      11      66 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAia 17
                  Dv++vGGgpaG+ AAi 
    EGE27909.1 11 DVIIVGGGPAGLSAAIR 27
                  9*************985 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   0.00021      0.21       1      16 [.     513     528 ..     513     530 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00021
      Fer4_2   1 apvvvdtdrCigCgaC 16 
                 +++v+++++C++C++C
  EGE27909.1 513 PKFVINSQNCVHCKTC 528
                 5799************ PP

>> GramPos_pilinD1  Gram-positive pilin subunit D1, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0003      0.29      90     146 ..     430     491 ..     418     498 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
  GramPos_pilinD1  90 dakeaklskatak.....eGianftklkkgrdgvYlivEtkekstykg.....kAvPvvitLPlvtn 146
                      + + +k++ a +      +G+ +f+kl+     v+    +++  + +       AvPv + LPl+  
       EGE27909.1 430 YSTLDKADHAYKPnypkpDGKLTFDKLS----SVFISNTNHAEDQPNHlrltdPAVPVSLNLPLY-A 491
                      333333333333355556**********....8999888888888855*****************.3 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.5   0.00072      0.71       1      33 [.      11      47 ..      11      62 .. 0.73
   2 ?   -1.7   0.0         1     1e+03     319     344 ..     326     355 ..     321     384 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00072
                    EEEEE--SHHHHHHHHHHHHHTTTS....SEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk....levtlves 33
                    +++ivGGG+aG  aA+ l++         ++v ++e+
      EGE27909.1 11 DVIIVGGGPAGLSAAIRLRQLAIAAgmdeFTVCVIEK 47
                    69**************998753211112366666665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                     EE-CCCTEE--CCCS-HHHHHHH....HHH CS
  Trp_halogenase 319 valGlasgfvePlestsihliqa....alr 344
                     v++G+ +gf++P +  + h+ ++    a++
      EGE27909.1 326 VLVGDDAGFLNPAKIKGTHTSMKsgmlAAE 355
                     89**********988887776654444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3909.72
//
Query:       EGE27910.1  [L=208]
Description: hypothetical protein EA1_00965 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-44  152.0   0.2    1.4e-44  151.7   0.2    1.1  1  DUF1285   Protein of unknown function (DUF1285)


Domain annotation for each model (and alignments):
>> DUF1285  Protein of unknown function (DUF1285)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.2   7.7e-49   1.4e-44       1     146 []      52     202 ..      52     202 .. 0.94

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 7.7e-49
                 EEE-TTS-EEETTEE---HHHHHHHHTTEEEETT....EEEEE-SS-EEEEEESS-SEEEEEEEEES-GGG-EEEEEETTS-EEE-SSSS-EEEEE-TT CS
     DUF1285   1 lrIkadGeWfyegspikRealvkLFasvLrkeed...geyfLvtPveklrIeVeDapflavevevegegeeqvlefrtnvgdvveldadhplrveedee 96 
                 ++I+++GeW++eg++++R++lv+LFasvL+ e +   + ++L+tP++k++I+V Dap+++++v+++++ + +++ef t+ gdv++ld+dhpl +++ ++
  EGE27910.1  52 IEIRDNGEWWHEGQKMTRQSLVDLFASVLWVEWHddqAIHYLKTPTDKYQIHVADAPLFINQVTQVTDADGEWIEFGTTNGDVIRLDEDHPLYFKRFGD 150
                 78***************************9987766689*********************************************************766 PP

                 T-SEEEEEEEETTEEEEE-HHHHHHHHTT-EEET........TEEEEEETTEEE CS
     DUF1285  97 ageprpyvkvrngleArisrnvfyeLvelaeeeev....dgktvlgvesggaff 146
                   e r+y+  r gl+Ar+ +n++y+L+++++ +++    ++ktvl ++sgg+++
  EGE27910.1 151 --EERVYIDTRFGLTARLMNNAMYHLIQMGRLSQIqesrQNKTVLKLSSGGKIY 202
                 ..79**************************99887666689999*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1709.29
//
Query:       EGE27911.1  [L=285]
Description: glutamate racemase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-30  107.0   0.0    1.6e-30  106.7   0.0    1.1  1  Asp_Glu_race  Asp/Glu/Hydantoin racemase


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   8.8e-35   1.6e-30       1     222 [.      17     229 ..      17     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 8.8e-35
                   EEEC.SCCCCHHHHHHHHHHBTTSSGGGS..EEEEE-CC.S-TCHHHHHCH.T..THH.HHHHHHHHHHCTTESEEEE--CHHHHH.HHHHHHH-SS CS
  Asp_Glu_race   1 IGgm.gpeatlsvlrklveatpaesdqehlplivlndsa.ipdrteaieeesgddpvl.klleaakkLekagadaiviaCnTahav.adelqkkiki 93 
                   IG++ +++++lsv+r+l+e +p+e+      +++++d++  p + ++     gd+ +l  +l+a+++L ++g+++iviaCn+a+a+ ++ l+  ++i
    EGE27911.1  17 IGIFdSGVGGLSVYRHLSELMPKER------YVYYADTQnLP-YGNKS----GDE-ILfLTLQAVDWLCRQGCKLIVIACNSASAYsLTTLRIRCRI 101
                   9************************......********666.33333....443.566************************865267888***** PP

                   EEEECHHHHHHHHHHHSS-EEEEEE-HHHHHCTHHHHHHHHHGT.EEE....T-CCCHHCCHCHHHH.TT-TTSH.HHHHHHHHHHHHH.TTT-SEE CS
  Asp_Glu_race  94 PvlgiveataealkatgvkkvglLgTrgtlksglyqkeleanqgievvvpseelqssvnqaiyeelk.aGevtee.arrailkllerla.ergadav 187
                   P++g+v+a+  a++  ++++++lL+T++tl+ +l ++ +++ +  + v     ++++   +  ++ + +G   +   ++ ++k  + ++ ++g+d +
    EGE27911.1 102 PIVGLVPAVKPACEMSQTRQIALLATQATLQGQLLAQVIHEVATSKGV----TVHKHFEPML-VPWVeSGMPINHhVADLLIKQTQ-AWyQQGVDIL 192
                   ****88877777777*********************999996333223....3333443333.46664777444447777777777.455******* PP

                   EE-STTHHHHHHHHHHCC-TT...SEEEEHHHHHHHH CS
  Asp_Glu_race 188 iLGCTelplllekaealekek..svpvidptdilare 222
                   +LGCT++p++ + ++   +e+   ++++d+++++a+ 
    EGE27911.1 193 VLGCTHYPFFRQFLQDWIDEQhiTMTLLDSGAAIAQR 229
                   ***************999999899**********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2365.63
//
Query:       EGE27912.1  [L=72]
Description: hypothetical protein EA1_00975 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1598  (0.0891293); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 589.17
//
Query:       EGE27913.1  [L=473]
Description: lytic murein transglycosylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-94  315.8   0.0    3.7e-94  315.2   0.0    1.2  1  SLT_2            Transglycosylase SLT domain
    9.8e-10   38.5   0.0    2.5e-09   37.2   0.0    1.7  1  PG_binding_1     Putative peptidoglycan binding domain
      0.002   18.4   0.1     0.0066   16.7   0.1    1.9  2  PG_binding_3     Predicted Peptidoglycan domain
  ------ inclusion threshold ------
      0.018   15.5   0.0      0.059   13.9   0.0    1.9  2  Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylgluc
      0.088   13.1   0.0       0.24   11.7   0.0    1.8  1  PG_binding_2     Putative peptidoglycan binding domain
       0.16   11.6   0.4       0.73    9.5   0.0    2.3  3  SLT              Transglycosylase SLT domain


Domain annotation for each model (and alignments):
>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.2   0.0   1.3e-97   3.7e-94       2     291 .]      34     322 ..      33     322 .. 0.95

  Alignments for each domain:
  == domain 1  score: 315.2 bits;  conditional E-value: 1.3e-97
       SLT_2   2 feawlaelkeeaaaegiseetleaalagvepkprvieldkkqaefkktleeYlkrfvtekriakGraflkehaallariekeyGVpaeiivAiwgvEtr 100
                 f+++l++lk+  + + +s  t+e+  +  +p+p+vi++ + q+efkk +++Yl+++v+++r+++G ++ +e+a++l+rie++yGV++e ++++wgvE++
  EGE27913.1  34 FQQCLSTLKNSSTFRSVSGVTFEK-YRPSQPDPSVIRSLNYQPEFKKDVWDYLASLVDSERVQDGIRAKHEQADVLRRIESRYGVKPEHVLGVWGVESN 131
                 889999999999999999999999.78889********************************************************************* PP

       SLT_2 101 yGkntgkfrvldalatlafdgrRseffrkeliaalklldegdvdpeelkGSwaGamGltQFmPssylkyAvDfdgdgrrDlwnspaDalaSvAnyLkkh 199
                 +G++ gk++++d+latl++  rR+++fr e ++alk++++gd++pe+++GSwaGa+G+tQFmPs++l++AvDfdgdgr+Dl+ns+aDalaS+An+L k 
  EGE27913.1 132 FGQTLGKKNLFDSLATLSCFDRRQSYFRGEYANALKIVQNGDIHPEDMTGSWAGAFGQTQFMPSTFLELAVDFDGDGRKDLVNSKADALASTANFLVKR 230
                 *******************99****************************************************************************** PP

       SLT_2 200 gWqagepwgvevklpaefdellagkkkplaewaalgvkraegka.paaekaeaslllpagekgpaflvlknfkvitrYNrStlYalaVaelad 291
                 g++ gepwg+ev+l+    ++ +++k+++++w+a+g++  +g++ p++  a+a lllpag++gpaflv knf++ ++YN+S++Yala+a+l+d
  EGE27913.1 231 GYRLGEPWGYEVRLNGYNGSSGRRNKQSINHWRAQGITLPNGQPiPNN-MASAGLLLPAGRQGPAFLVGKNFDTFYSYNASESYALAIAQLSD 322
                 **************944444444468999************9997665.8889**************************************97 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   8.4e-13   2.5e-09       4      52 ..     348     396 ..     346     401 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 8.4e-13
                   HHHHHHHHHHHTT--.SSSSSB--HHHHHHHHHHHHHTTST-SSSBSHH CS
  PG_binding_1   4 dvkelqryLsrlGylsgpadgtfgpateeaVkefQqffgLpvtGildpa 52 
                   + ke+q++L + Gy+ g++dg+ g+ t++a+ ++Q++ g  ++G+++++
    EGE27913.1 348 ESKEIQQALINAGYDIGAVDGIIGDNTRQAIMDYQRKVGVMPDGRAGQK 396
                   689************99******************************97 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.1   1.5e+04      54      71 ..     320     337 ..     316     338 .. 0.78
   2 !   16.7   0.1   2.2e-06    0.0066       6      33 ..     352     380 ..     347     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.1
                   HHHHHHHHHSTHHHHHHH CS
  PG_binding_3  54 yldlaerritnerflrGW 71 
                   + dl   + tn++f   W
    EGE27913.1 320 LSDLVRDENTNTNFATPW 337
                   567777788999998877 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.2e-06
                   HHHHHT.....S.---S---HHHHHHH.. CS
  PG_binding_3   6 lQriLgklgydv.kvDGiiGpkTlaAvea 33 
                   +Q++L + gyd+ +vDGiiG +T++A+++
    EGE27913.1 352 IQQALINAGYDIgAVDGIIGDNTRQAIMD 380
                   799998899997489************73 PP

>> Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     2e-05     0.059       2      42 ..     106     143 ..     105     204 .. 0.80
   2 ?   -3.3   0.0       4.4   1.3e+04      11      14 ..     307     310 ..     258     325 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-05
                      HHHHHHHHHCT.-HHHHHHHHHHHHTTTTCHHHHHCT-TSE CS
  Glucosaminidase   2 eaaleaakkygippsvalaqaalEsgwgtsrlakeqnNlfG 42 
                      +++++++++yg+ p+ +l+ + +Es++g++    +++Nlf 
       EGE27913.1 106 DVLRRIESRYGVKPEHVLGVWGVESNFGQT---LGKKNLFD 143
                      5678999*********************87...35667775 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.4
                      CT.- CS
  Glucosaminidase  11 ygip 14 
                      y+  
       EGE27913.1 307 YNAS 310
                      2222 PP

>> PG_binding_2  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.1e-05      0.24       7      51 ..     338     382 ..     332     384 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.1e-05
  PG_binding_2   7 peeervlaedvaeevqaaLsrLGyydgeaggafrealrdALrafi 51 
                   p+++  +   + +e+q+aL + Gy  g+ +g +++++r+A   ++
    EGE27913.1 338 PTDDPGIGRRESKEIQQALINAGYDIGAVDGIIGDNTRQAIMDYQ 382
                   6666666667789***************************99987 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00024      0.73       5     100 ..     110     253 ..     106     265 .. 0.78
   2 ?   -2.8   0.0       1.5   4.6e+03      64      86 ..     308     330 ..     303     335 .. 0.56
   3 ?   -3.5   0.0       2.6   7.8e+03      57      73 ..     406     422 ..     397     438 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00024
                 HHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTS............................................EBTTTTBETTTHHHHHHHHT.-S CS
         SLT   5 kaekkygvepsllaaiaqvESgfnpkAvsksg............................................avGLmQimpstakrlglrvk.ls 58 
                   e++ygv+p+ ++ +  vES+f  +   k+                                             a G  Q+mpst+ +l+  +  ++
  EGE27913.1 110 RIESRYGVKPEHVLGVWGVESNFGQTLGKKNLfdslatlscfdrrqsyfrgeyanalkivqngdihpedmtgswagAFGQTQFMPSTFLELAVDFDgDG 208
                 668899999999999999***9999888877788889999999999999999999999999999999999999999**************999888877 PP

                 HHHHCSHH.HHHHHHHHHHHHHHHTTTT..HHHHHHHHHHH-HHH CS
         SLT  59 edelldPe.knisagakyLkslykqyng..slllalaAYNaGegt 100
                 +++l + + +++   a++L ++  ++++    +  l +YN   g+
  EGE27913.1 209 RKDLVNSKaDALASTANFLVKRGYRLGEpwGYEVRLNGYNGSSGR 253
                 777776651455556667766666666533233345566655555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
                 SHHHHHHHHHHHHHHHHHTTTTH CS
         SLT  64 dPeknisagakyLkslykqyngs 86 
                 +  ++  ++++ L++l++  n++
  EGE27913.1 308 NASESYALAIAQLSDLVRDENTN 330
                 44455556666666666555554 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.6
                 -SHHHHCSHHHHHHHHH CS
         SLT  57 lsedelldPeknisaga 73 
                  s+++++ P+++i++ +
  EGE27913.1 406 ASIQSAQTPAQSINTPT 422
                 56677788888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3417.04
//
Query:       EGE27914.1  [L=177]
Description: methionine-S-sulfoxide reductase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-59  199.5   0.2    3.8e-59  199.3   0.2    1.0  1  PMSR      Peptide methionine sulfoxide reductase


Domain annotation for each model (and alignments):
>> PMSR  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.3   0.2   2.1e-63   3.8e-59       1     153 []       3     153 ..       3     153 .. 0.99

  Alignments for each domain:
  == domain 1  score: 199.3 bits;  conditional E-value: 2.1e-63
                 EEEEE-S-HHHHHHHHCTSTTEEEEEEEEESSS-SS--HHHHHTTTT--EEEEEEEEETTTS-HHHHHHHHHHTS-TT-SSEETTEESGGG--EEEESS CS
        PMSR   1 eavlagGCFWgveklfeklkGvlstevGYagGktenptYeevcsgktghaEavevvydpekvsleellelffeihDptqlnrqgnDvGtqYrsaiyytn 99 
                 +++l+gGCFW++e++f++lkG+ s+ +GYagG  ++++Y+ vc+g+tgh+E++ev+yd++ + ++++l++ff +hDpt+lnrqgnD+GtqY s+i+yt+
  EGE27914.1   3 TILLGGGCFWCTESVFDSLKGINSVVSGYAGGAGDTANYQAVCTGETGHVEVIEVNYDDSILGTDAILSVFFATHDPTTLNRQGNDIGTQYASVIFYTD 101
                 589************************************************************************************************ PP

                 CCHHHHHHHHHHHHHTTHTTSSS---EEEEG-SEEE--CCCTTHHHH-TTS.--T CS
        PMSR 100 eeqkevaeevleelqkkkalkkkivteieplkefykaeeyHqqYleknpeg.ych 153
                 +eq +va++++e+l+++   + ++vt++ep+ +fy+ae+yHq+Y+++np++ yc+
  EGE27914.1 102 DEQAKVAKAMIESLRSE---GVNVVTKLEPAPTFYPAEDYHQNYYANNPTQaYCN 153
                 *****************...99****************************99*96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1433.97
//
Query:       EGE27915.1  [L=256]
Description: tRNA (cmo5U34)-methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-11   43.3   0.0    7.4e-11   42.6   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    1.1e-09   38.3   0.0    1.4e-09   37.9   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    8.7e-09   36.0   0.0    1.5e-08   35.2   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    1.9e-07   31.6   0.0    3.3e-07   30.8   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    6.6e-07   28.8   0.0    8.3e-07   28.5   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
    7.2e-05   22.4   0.0       0.21   11.0   0.0    2.2  2  CheR             CheR methyltransferase, SAM binding domain
    0.00026   20.4   0.0    0.00039   19.8   0.0    1.2  1  Rsm22            Mitochondrial small ribosomal subunit Rsm22
    0.00098   18.8   0.0     0.0016   18.1   0.0    1.3  1  NodS             Nodulation protein S (NodS)
     0.0011   18.6   0.0     0.0019   17.7   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0014   18.5   0.0     0.0019   18.1   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.023   14.2   0.0      0.032   13.7   0.0    1.3  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
       0.09   12.7   0.0       0.15   12.0   0.0    1.3  1  Methyltransf_18  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   4.9e-14   7.4e-11       1      97 []      74     172 ..      74     172 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 4.9e-14
                      EEEET-TTSHHHHHHHCTS.T.SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.g.kakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeia 90 
                      v dlG+  G +++ala+++ + + +++++Dis+ m+e+a++ + e  +  +++f   d+ ++++    +Dl++++ +l++l+++++  +l++++
       EGE27915.1  74 VYDLGTSLGAVSFALADKFaPdELEIHAIDISAPMIERAKSVVGEYYPdhDIRFWLDDVCQMDLLP--CDLIIINLTLQFLPPDQRLLLLQKCH 165
                      78*****************8469********************9977788************9885..******877***************** PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                       +L +gG
       EGE27915.1 166 HALAEGG 172
                      ******9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   9.4e-13   1.4e-09       6     127 ..      73     194 ..      70     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 9.4e-13
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgp.kaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdk..ile 95 
                      rv+DlG+  G+ +f+la++  p + e++ iDis+ +ie+A++   +   d  ++F   d+ +++      + Dli+ n +l+ l+  +    l+
       EGE27915.1  73 RVYDLGTSLGAVSFALADKFAPdELEIHAIDISAPMIERAKSVVGEYYPDhDIRFWLDDVCQMDL----LPCDLIIINLTLQFLPPDQRllLLQ 162
                      79****************99887889*******************99999*************94....68**********5555444311567 PP

  Methyltransf_31  96 eiervlkpggilliedprllaelpakveeesk 127
                      + + +l +ggil++++  +l++  + + + ++
       EGE27915.1 163 KCHHALAEGGILILTEKTHLTDEQDDAWRVER 194
                      *************9998855554444444444 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0     1e-11   1.5e-08       2      99 .]      76     174 ..      75     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1e-11
  Methyltransf_12   2 eiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.kdir.evldnirk 91 
                      ++G+  G++++al++k+   ++e++++Dis+ +ie+ak    ++ +++   +++  +d+ + d     Dl++++ +l+ l +d r  +l+++++
       EGE27915.1  76 DLGTSLGAVSFALADKFapDELEIHAIDISAPMIERAKSVVGEYYPDH--DIRFWLDDVCQMDLL-PCDLIIINLTLQFLpPDQRlLLLQKCHH 166
                      89********************************99999999999866..677776777777776.9*************966665999***** PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +L+ gG+l
       EGE27915.1 167 ALAEGGIL 174
                      ******87 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.2e-10   3.3e-07       2      96 .]      76     176 ..      75     176 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.2e-10
                      EET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHH CS
  Methyltransf_11   2 dvGcGtGrlaealakrg....arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRv 87 
                      d+G+  G+++ ala+++     ++ ++D+s+ m+++ak+ + e ++   ++f   d+ ++ +    +Dl++++ +l+++  +++  +l++++  
       EGE27915.1  76 DLGTSLGAVSFALADKFapdeLEIHAIDISAPMIERAKSVVGEYYPdhDIRFWLDDVCQMDLLP--CDLIIINLTLQFLppDQRLLLLQKCHHA 167
                      89************8777999****************999999998999**********99988..9************98889999******* PP

                      EEEEEEEEE CS
  Methyltransf_11  88 LkpgGllvi 96 
                      L  gG+l++
       EGE27915.1 168 LAEGGILIL 176
                      ******985 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   5.5e-10   8.3e-07      61     176 ..      69     189 ..      27     222 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 5.5e-10
                     GG-SEEEEET-TTSHHHHHHHHH-.T.T-EEEEEE-HH.HHHHHHHHS.-----TTEEEEES-TTTS-----SEEEEESSGGGS-HHHHHHHHHH CS
  Methyltransf_2  61 eglkslvDvGGGtGalakaivsay.P.tikvivfDlpe.VveaAkehl.sageeervefvgGdffkdslPeaDaillkrvlhDwsdekcvklLkr 151
                      ++++++D+G   Ga+  a + ++ P ++++   D++   +e+Ak+ + +   +++++f   d+ +  l   D+i+++  l     ++   lL++
      EGE27915.1  69 ARVSRVYDLGTSLGAVSFALADKFaPdELEIHAIDISApMIERAKSVVgEYYPDHDIRFWLDDVCQMDLLPCDLIIINLTLQFLPPDQRLLLLQK 163
                     57899****************9994346889999*96439*******999999****************************************** PP

                     HHHH--TT-EEEEEE--.--TTS--- CS
  Methyltransf_2 152 vkkalpagGkvivveav.lgadpsge 176
                     +++al +gG +i+ e   l  ++++ 
      EGE27915.1 164 CHHALAEGGILILTEKThLTDEQDDA 189
                     **************988455444444 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00014      0.21      31      83 ..      70     115 ..      55     130 .. 0.74
   2 !    9.5   0.0   0.00041      0.61     136     184 ..     139     187 ..     122     196 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                 SSEEEEEES-TTTHHHHHHHHHHHCHSTTTSSS-EEEEEEESSCHHHHHHHHT CS
        CheR  31 krvriwsagcssGeEpYslAmllketlpkaaklkvkilAtDidlkvlekAkag 83 
                 ++ r++  g s G  +++lA  ++       + +++i+A+Di++ ++e+Ak+ 
  EGE27915.1  70 RVSRVYDLGTSLGAVSFALADKFAP------D-ELEIHAIDISAPMIERAKSV 115
                 6678888888888777777644444......3.678**************985 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00041
                 -EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE-TTB--SSSCC CS
        CheR 136 klDvifcrnvliYfdeetqekvlerfaeklkpgglLllGhsEslkklkd 184
                 + D+i+    l ++ ++++  +l++ +++l++gg+L+l +  +l++++d
  EGE27915.1 139 PCDLIIINLTLQFLPPDQRLLLLQKCHHALAEGGILILTEKTHLTDEQD 187
                 579999999999**************************99999986555 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.6e-07   0.00039      38     140 ..      74     178 ..      63     183 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.6e-07
       Rsm22  38 lldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelke.aalrrsvirealeleeadLviisyvLleledesreklvknlWakask 134
                 + d+g   g++ +a  + +  +  e+  id s+++ e +k ++ +    +    + ++v+  +++l + dL+ii  +L+ l +++r  l+++  +++++
  EGE27915.1  74 VYDLGTSLGAVSFALADKFApDELEIHAIDISAPMIERAKSVVGEYYPDHDiRFWLDDVC--QMDLLPCDLIIINLTLQFLPPDQRLLLLQKCHHALAE 170
                 6799***************99***************999999877655555055667776..89****************************9988877 PP

       Rsm22 135 ..ilvivE 140
                   il++ E
  EGE27915.1 171 ggILILTE 178
                 64444444 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-06    0.0016      29     120 ..      56     153 ..      49     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
        NodS  29 erlaqilrlslaqgsiadalevGcaaGa....lterlapyckrltvvdvveeaiararervkes...shiswivsdvqqfstdekfdlivvaevlyyie 120
                 +r+  + ++s ++ +++ + ++G + Ga    l++++ap    +  +d+    i+ra+  v e     +i +   dv+q+++    dli++   l ++ 
  EGE27915.1  56 RRHCLLRQVSDRGARVSRVYDLGTSLGAvsfaLADKFAPDELEIHAIDISAPMIERAKSVVGEYypdHDIRFWLDDVCQMDLL-PCDLIIINLTLQFLP 153
                 56666677899999********999997222245677788888999***************98643368************96.579999988887765 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0019      23     146 ..      60     185 ..      57     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
                 HHHHCHCC..TCSEEEEET-TTSHHHHHHHHHT..TC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTCHCHH CS
         MTS  23 Lletlpke..lsgkvlDlGcGaGvlgaalakes..peaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagkatel 115
                 Ll++++++  +  +v DlG+  G+++ ala++   +e+e++++d++a  +e ak  + +   +  +++   dv +      +dli+ N  ++       
  EGE27915.1  60 LLRQVSDRgaRVSRVYDLGTSLGAVSFALADKFapDELEIHAIDISAPMIERAKSVVGEYYPDhdIRFWLDDVCQMDL-LPCDLIIINLTLQFLP---P 154
                 55566665555567***************9876224567******************999888768888888877666.99*******6554433...3 PP

                 HHHHHHHHHHHHHEEEEEEEEEEEETTSCHH CS
         MTS 116 avaeeliaeAkeaLkegGeLliVanrklgye 146
                 +    l+++ ++aL+egG L++  +++l  e
  EGE27915.1 155 DQRLLLLQKCHHALAEGGILILTEKTHLTDE 185
                 5566688888888999998888888887655 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.2e-06    0.0019      17     137 ..      65     194 ..      53     238 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.2e-06
  Methyltransf_23  17 lpklraggrvLdiGcGtGillevlrengf....svtgvDlspeaveiae....kakkaqkdqfdeqeaaepqg...............kfdlIv 87 
                      +++  + +rv d+G+  G ++  l+++++    ++ ++D+s  ++e+a+    +                                   +dlI+
       EGE27915.1  65 SDRGARVSRVYDLGTSLGAVSFALADKFApdelEIHAIDISAPMIERAKsvvgE----YYPD----------HdirfwlddvcqmdllPCDLII 144
                      455667789*********9877777776556669************98533320....2222..........2233333344455677****** PP

  Methyltransf_23  88 lrevlehvp.d.ppellrqiatllkpgGylllseplaslkedrllldwlylv 137
                       + +l  +p d    ll++ +  l++gG l+l+e +  +  d+  + w+ ++
       EGE27915.1 145 INLTLQFLPpDqRLLLLQKCHHALAEGGILILTEKT--HLTDEQDDAWRVER 194
                      *********644668899***************963..44555555555544 PP

>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.1e-05     0.032      52     168 ..      67     185 ..      41     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
  Methyltransf_PK  52 gkrevkvaldcGaGiGrvtknlLlkll...skvDlvepvekflekakeelaeekkkvgkvyvvglqeftP.eegrYdliWiqWcvghLtDedlv 141
                         +v+++ d G+ +G v+  l  k++    ++  ++  + ++e+ak+ ++e      + +   l++    +    dli i   +  L+ ++ +
       EGE27915.1  67 RGARVSRVYDLGTSLGAVSFALADKFApdeLEIHAIDISAPMIERAKSVVGE--YYPDHDIRFWLDDVCQmDLLPCDLIIINLTLQFLPPDQRL 158
                      3467888999999999999999888887666788889999999999999998..3333444445555543134567999999******999999 PP

  Methyltransf_PK 142 aflkrckkalkpnGlivvkenvakeek 168
                        l++c +al+++G++++ e +  +++
       EGE27915.1 159 LLLQKCHHALAEGGILILTEKTHLTDE 185
                      9*****************998765543 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.7e-05      0.15      13      76 ..      69     134 ..      60     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.7e-05
  Methyltransf_18  13 ekgsrvaDiGtDHgylpiylvkegkak..kviasDinegplekakeniekagledkievrlsdGle 76 
                       + srv D Gt  g ++++l+++   +  +++a+Di++  +e+ak+ + ++  +++i++ l d  +
       EGE27915.1  69 ARVSRVYDLGTSLGAVSFALADKFAPDelEIHAIDISAPMIERAKSVVGEYYPDHDIRFWLDDVCQ 134
                      56789****************9876552269***************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1973.83
//
Query:       EGE27916.1  [L=346]
Description: tRNA (mo5U34)-methyltransferase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.9e-115  383.5   0.0   7.1e-115  383.3   0.0    1.0  1  Methyltransf_9   Protein of unknown function (DUF1698)
    1.1e-09   38.3   0.0    1.9e-09   37.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    6.7e-07   29.2   0.0    1.9e-06   27.7   0.0    1.8  1  Methyltransf_31  Methyltransferase domain
    0.00015   22.4   0.0    0.00046   20.8   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
     0.0029   18.2   0.0      0.011   16.4   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   15.2   0.1       0.12   12.1   0.1    2.1  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.15   12.8   0.0       0.43   11.4   0.0    1.8  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.3   0.0  2.8e-118  7.1e-115      10     315 .]      25     344 ..      14     344 .. 0.91

  Alignments for each domain:
  == domain 1  score: 383.3 bits;  conditional E-value: 2.8e-118
                     THHHHHCHHHHHHHHHHCTC.CHHHCCHHHHHCS-----SEEESSSS-EEE-SS..-HHHHHHHHHHHHTT----CE-EEETT.....EEE--SE CS
  Methyltransf_9  10 lsewletlpaqlkewqekeh.gdlkrwakaleklpelkpdsidlkdsvtiekeeqlsegekkklekllralmPWrkGPfslfG.....vdidteW 98 
                       ewl+ lp+ l++ ++k++  +   ++++++klp ++p++i+l+ +  i+++ ++++ + ++ e+ll++lmPWrkG f+  G     ++idteW
      EGE27916.1  25 AYEWLKLLPDWLANIKNKDRyAHAPYYESIIDKLPDVTPNEINLNAAC-ITSQIDFTHSDYRCSEALLKNLMPWRKGGFKF-GqgdrlIHIDTEW 117
                     569***********99776615566788899*************8875.4555689***********************97.3247779****** PP

                     EHHHHHHHHGGGS.--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTT......TSSEEEE---GGGS-T---....E CS
  Methyltransf_9  99 rsdwkWdrvlphlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllge......dqrahllplgieqlpelea....f 183
                     rsd kWdr+lp++ dl+g+++ldvG g+Gyh +rmvg+ga++v+ idPs lf+ qf a r++lg+      + + h +p+g+e+lp+ +     f
      EGE27916.1 118 RSDLKWDRILPYIGDLTGKRVLDVGGGSGYHGFRMVGAGASTVIVIDPSCLFYHQFMATRHFLGNiknryeQSPIHFIPVGLEELPQDNNqsglF 212
                     ***************************************************************97332222345789*********94322355* PP

                     EEEEEES-GGG-S-HHHHHHHHHCTEEEEEEEEEEEE-BSS-TT-EE--SS-BTTBSS---EEBHHHHHHHHHHTT-EEEEEEEEEE--TTTB-- CS
  Methyltransf_9 184 dtvfsmGvlyhrrsPldhllqlkdqlvkgGelvletlvieGdenavlvPedryakmrnvyfiPsaaalkvWlekvgfvdvrivdesvttleeqrk 278
                       vf mGvlyhr sP+d llqlk+ql+kgGel+letlv++Gden+vlvP++rya m+nvyf+Ps++al++Wl+k+gf +vr+vd ++tt +eqr+
      EGE27916.1 213 HSVFCMGVLYHRASPFDCLLQLKNQLTKGGELILETLVVDGDENTVLVPKNRYAMMNNVYFLPSVSALQLWLDKIGFAQVRCVDINITTNDEQRT 307
                     *********************************************************************************************** PP

                     BTTB-S--HHHHEETTEEEEETTSSB--EEEEEEEE- CS
  Methyltransf_9 279 teWleteslkdfldpedpektveGypaPkravlvark 315
                     teW++ +sl dfld +dp+kt eGyp Pkrav++a+k
      EGE27916.1 308 TEWMTYHSLDDFLDTKDPSKTAEGYPRPKRAVIIAKK 344
                     ***********************************97 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   7.6e-13   1.9e-09      14     162 ..     124     291 ..     112     293 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 7.6e-13
  Methyltransf_23  14 erllpk..lraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae........kakkaqkdqfdeq..........eaaepqgkfdlI 86 
                      +r+lp+  + +g+rvLd+G G+G+    +   g+ +v+++D+s+   +  +        + +k++ +q + +          ++ +++g f  +
       EGE27916.1 124 DRILPYigDLTGKRVLDVGGGSGYHGFRMVGAGAsTVIVIDPSCLFYH--QfmatrhflGNIKNRYEQSPIHfipvgleelpQDNNQSGLFHSV 215
                      56666666899************544445555656999****974222..133445555444444444444455555554444445888***** PP

  Methyltransf_23  87 vlrevlehvpdppellrqiatllkpgGylllseplaslk.edrllldwlylvpagrhisffsarslkelleeaGlev 162
                       ++ vl+h  +p   l q+++ l  gG l+l++  ++   ++ l+ +++y+  +  +  + s ++l  +l + G+  
       EGE27916.1 216 FCMGVLYHRASPFDCLLQLKNQLTKGGELILETLVVDGDeNTVLVPKNRYAMMN-NVYFLPSVSALQLWLDKIGFAQ 291
                      *********************************98887449999******9866.7888889999999999999975 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   7.5e-10   1.9e-06       4     113 ..     135     250 ..     132     314 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 7.5e-10
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnve..Feqgdieelekl.led........ekfDlilsnevlna 86 
                      g+rvlD+G G+G+ +f++   +g  ++v+ iD  +  + + + +a +++l n++   eq++i+ ++   le+          f  +++ +vl++
       EGE27916.1 135 GKRVLDVGGGSGYHGFRMV-GAG-ASTVIVID--PSCLFYHQFMATRHFLGNIKnrYEQSPIHFIP-VgLEElpqdnnqsGLFHSVFCMGVLYH 223
                      789****************.322.45566666..66799999999999999875226677777666.334444555555588888********* PP

  Methyltransf_31  87 ladpdkileeiervlkpggilliedpr 113
                       a+p ++l ++++ l++gg+l++e+  
       EGE27916.1 224 RASPFDCLLQLKNQLTKGGELILETLV 250
                      ***********************9988 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.8e-07   0.00046       1      97 []     138     242 ..     138     242 .. 0.69
   2 ?   -3.7   0.0         7   1.8e+04      16      30 ..     284     298 ..     279     304 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.8e-07
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHH..........HHHHHTTTTEEEEESBCCGBSSSTT...TEEEEEEESTGGGSSHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaar..........eraeeeglnvefvqgdaedlpfedg...sfDlvvssgalhhlsded 81 
                      vLd+G G+G + +++  + g+++v+ +D+s  +  +            +r+  e+  ++f+   +e+lp++++    f+ v+++g+l h     
       EGE27916.1 138 VLDVGGGSGYHGFRMVGA-GASTVIVIDPSCLFYHQFMatrhflgnikNRY--EQSPIHFIPVGLEELPQDNNqsgLFHSVFCMGVLYHRA--S 226
                      9***************99.69********9877765442223332211333..4449************8555122677788876666643..4 PP

                      HHHHHHHHHHHEEEEE CS
  Methyltransf_25  82 lekalkeiarvLkpgG 97 
                        ++l ++++ L++gG
       EGE27916.1 227 PFDCLLQLKNQLTKGG 242
                      4467777777777776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7
                      HCTSTSSEEEEEESS CS
  Methyltransf_25  16 akrlgkakvtgvDis 30 
                      ++++g a+v +vDi+
       EGE27916.1 284 LDKIGFAQVRCVDIN 298
                      445567899999986 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.2e-06     0.011       1      95 [.     139     245 ..     139     246 .. 0.83
   2 ?   -2.0   0.0       2.3   5.8e+03      11      29 ..     281     300 ..     277     313 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.2e-06
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHH..........HHHCCHHT-EEEETTEECCCTSS-TT...-EEEEEEES-CCC-CCHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlkla..........kekaseeglkvefvvadaeklpfedn...sfDlvvssevlhhvedpeka 80 
                      LdvG G+G++   +  +g ++v+ +D+s  +  +           k+++++++  + f+   +e+lp  +n    f  v++  vl h + p ++
       EGE27916.1 139 LDVGGGSGYHGFRMVGAGaSTVIVIDPSCLFYHQFmatrhflgniKNRYEQSP--IHFIPVGLEELPQDNNqsgLFHSVFCMGVLYHRASPFDC 230
                      89********9999988899******999998544445555555566666666..99*********9777633369999*************** PP

                      HHHHHHHEEEEEEEE CS
  Methyltransf_11  81 lkeiaRvLkpgGllv 95 
                      l +++  L +gG l+
       EGE27916.1 231 LLQLKNQLTKGGELI 245
                      ************998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
                      HHHHHHTT.SEEEEEES-HH CS
  Methyltransf_11  11 aealakrg.arvvgvDlske 29 
                      + +l k g a+v +vD++ +
       EGE27916.1 281 QLWLDKIGfAQVRCVDINIT 300
                      56777888999999998755 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.7e-05      0.12      73      89 ..     134     150 ..     123     169 .. 0.76
   2 ?    0.4   0.0      0.18   4.6e+02     158     172 ..     233     247 ..     222     279 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.7e-05
                 TT-EEEEES-TTSHHHH CS
        PCMT  73 kgarvLevGsGsGylta 89 
                  g+rvL+vG+GsGy+  
  EGE27916.1 134 TGKRVLDVGGGSGYHGF 150
                 699***********964 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.18
                 HHHHTEEEEEEEEEE CS
        PCMT 158 alidQLkeGGrlvvP 172
                 +l +QL +GG l++ 
  EGE27916.1 233 QLKNQLTKGGELILE 247
                 5779********985 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.43       1      99 []     139     244 ..     139     244 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...........ssfDlvvasnvlhhlkdir 83 
                      L++G+G+G   +++  +   ++++++D+s  +     + +a r+ + n ++++e+  ++  + g           + f  v++ +vl h + + 
       EGE27916.1 139 LDVGGGSGYHGFRMVGA-GASTVIVIDPSCLFY---HQFMATRHFLGNIKNRYEQSPIHFIPVGleelpqdnnqsGLFHSVFCMGVLYHRASPF 228
                      89******999999988.677777999998777...33333333333333333333332222224445567888899***************** PP

  Methyltransf_12  84 evldnirklLkpgGrl 99 
                      + l ++++ L++gG l
       EGE27916.1 229 DCLLQLKNQLTKGGEL 244
                      **************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2539.52
//
Query:       EGE27917.1  [L=305]
Description: hypothetical protein EA1_01000 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     9e-110  366.5  16.6   1.1e-109  366.2  16.6    1.0  1  DUF808     Protein of unknown function (DUF808)


Domain annotation for each model (and alignments):
>> DUF808  Protein of unknown function (DUF808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.2  16.6  6.2e-114  1.1e-109       2     302 ..       5     293 ..       4     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 366.2 bits;  conditional E-value: 6.2e-114
      DUF808   2 gllaLlDdiaalaklaaaslDDvaaaakkaakkaagvvvDDlavtaqqvsgvkaeRElpvvwkiakgSllNKlvillPaalllsafapwlitplLmlGg 100
                 +ll+LlDdiaa+       lDDv++++k+aakk+agv++DDla++aqqv+gv+a+REl+vvw +akgSl+NK +il+Paall+sa+++wlitplLmlGg
  EGE27917.1   5 SLLMLLDDIAAI-------LDDVSVMTKVAAKKTAGVLGDDLALNAQQVTGVRADRELAVVWGVAKGSLINK-LILVPAALLISAIVAWLITPLLMLGG 95 
                 89**********.......*****************************************************.9************************* PP

      DUF808 101 ayLcfEGaeKvlekl.....lhkeeeeeeeeeeaeea......dlaelEkekvkgairtDfiLSaEiivialgevaeeslltqvlvlvvvavliTvgvY 188
                 a+Lc+EGaeKv++k+      h+ ++e +++++ + a      dla++Ek+k++gairtDfiLSaEi+vi+lg +++++++t+++ l+++a+++TvgvY
  EGE27917.1  96 AFLCYEGAEKVVHKFtpnllPHEMDDEMAHTKRLK-AnadesiDLAAFEKDKIRGAIRTDFILSAEIVVISLGVMTAATFTTKAAALSAIAIMMTVGVY 193
                 ***************88764244444222222222.124567799****************************************************** PP

      DUF808 189 GlValivklDdvGlalakkkksklarklGrglvkamPkllkllsvvGtaAmllVgggilvhgleelglealaelvhhlaeavaeaaaalgavlewlvet 287
                 GlValivklDd+G++l++ + s+  +++Gr++++++P+l+k+ls+ Gt+Am+lVgggilvhg+          ++hh a+++a+    l++v++ l+e+
  EGE27917.1 194 GLVALIVKLDDMGIYLVN-QPSAYRQAMGRTILAFAPRLMKFLSFAGTLAMFLVGGGILVHGVG---------ILHHQAQDLAA----LSGVFGGLTEA 278
                 ******************.66999***************************************9.........9*****99987....899******** PP

      DUF808 288 llsavvGlvvGavvv 302
                 l+++++Gl++G++++
  EGE27917.1 279 LYNGMTGLIAGLMIL 293
                 ***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2330.74
//
Query:       EGE27918.1  [L=316]
Description: CRISPR-associated protein Cas1 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-08   34.6   0.0    1.7e-08   34.0   0.0    1.2  1  Cas_Cas1  CRISPR associated protein Cas1


Domain annotation for each model (and alignments):
>> Cas_Cas1  CRISPR associated protein Cas1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   9.3e-13   1.7e-08       8     262 ..      27     287 ..      20     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 9.3e-13
                 EEEEEETTEEEEEE..SSEEEEEEECCCEEEEEEESTEEEEHHHHHHHHHTT-EEEEE-TT......S-EEEEEEE.SSSSTHHHHHHHHHHHHSHHHH CS
    Cas_Cas1   8 aylrkkgerlvvek..egeekkeiplediesivifgevslstkalrllaekgipvvflsen......gkylgrlep.eesgnvelrraQyraaddeekr 97 
                 ++++k+g+ l+ ++   ++   +ip+ ++  i++ + +s++++a+rlla  g+ v f+         g  +  l+p +e++ +e+    +    d++kr
  EGE27918.1  27 RVMQKDGRILYLTEtkYQNHYYNIPIANTTVILLGTGTSITQAAMRLLAGAGVLVGFCGGGatplfsGVEIQWLSPqNEYRPTEYVQGWLSFWFDDKKR 125
                 55777888888877443345778*******9999999**********************994444444445567777888888888888899999999* PP

                 HHHHHHHHHHHHHHHHHHHHHCCHHCTT..HHHHCHCHHH.HHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHHHHCSCGGS-SS-SSSS-SSHHHHHHH CS
    Cas_Cas1  98 lelakkivagklenqrkvlrrlkrdree..eeleeaieel.eelleklekaesleeLrgiEGeaakaYfeafdkllkeefefegRsrrppkDpvNalLs 193
                 l +ak + +++le ++kv  + k+ +e   +  ++ + +l +++ +k+e+++s+  L+  E+ + k+ +   ++    +++fe+     ++D  N +L+
  EGE27918.1 126 LTIAKVFQKQRLEFTQKVWLKDKQLQEAgfDITDYDVVQLhTAFTNKIEQVDSVGDLLLAEALMTKRLYHYAKTKC--ALSFER-DF-HASDDANRFLN 220
                 *************999999888888856875555555555157899*******************99998888655..677764.44.458******** PP

                 HHHHHHHHHHHHHHHTSS--TT--SSS--TTSS-HHHHHHHHHHHHHHCHHHHHHHHHTTSS-GGGEEE CS
    Cas_Cas1 194 fgYtllysevlsaieavgLdPyiGfLHedrpgrpsLalDLmEefRpllvDrlvlslinkrqlkekdFek 262
                  g+ l y   +  +   g    + ++H  +++r +L++D+++  +  +v    + ++ k+ ++e++F +
  EGE27918.1 221 HGNYLAYGLGACTLWVLGIPHGFAVMH-GKTRRGALVFDVADLVKDAIVLPWSF-VCAKQNFTEQEFRQ 287
                 ***************************.7899************9988766554.45555666677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2738.15
//
Query:       EGE27919.1  [L=1098]
Description: CRISPR-associated helicase Cas3 family protein, partial [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-05   23.7   2.4    0.00022   21.4   0.1    2.7  2  HD_6      HD domain
  ------ inclusion threshold ------
      0.053   13.7   0.8       0.49   10.6   0.2    2.8  2  HD        HD domain
      0.069   14.0   1.5       0.24   12.2   0.5    2.5  2  DUF1062   Protein of unknown function (DUF1062)


Domain annotation for each model (and alignments):
>> HD_6  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   3.7e-08   0.00022      52     129 ..     114     229 ..      87     286 .. 0.62
   2 ?    1.1   0.2     0.064   3.8e+02      94     140 ..     897     949 ..     821     992 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.7e-08
                 HHHHHHHHCCCGGGSSHHHHTTS----TTS-.....-GGGT----HHHHHHHH.............................HH............... CS
        HD_6  52 rllaflaalHDlGKaspaFqakvpelaekleeaglelekelekarHdslgaal.............................le............... 106
                  ++++ a lHDlGK + +Fq+k ++ + +            + +rH+ +++ +                             l+               
  EGE27919.1 114 IIATLAALLHDLGKSTLGFQHKLKHGSTQG-----------DPYRHEWISLKIllwliqdcqtdsqwlerfgridewlktqkLSalndylkpcnldhad 201
                 344455678**************7766644...........5677887777774454455555444444444444444443300444444444444444 PP

                 .....HHHHHHHHHHHTTTS---HHHHH CS
        HD_6 107 .....evarslaaavggHHGkppkeeee 129
                         +++a++v++HH  pp  +  
  EGE27919.1 202 lsklpPLGQWVAWLVVSHHRLPPLVNVF 229
                 445556667**********966654443 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.064
                 ---HHHHHHHHHH..HHHHHHHHHHHTTTS.---HHHHHTSS-HHHHTT...H CS
        HD_6  94 karHdslgaalle..evarslaaavggHHG.kppkeeeekaekkssaae...d 140
                  +rH    ++l++     ++ ++a+  HHG +++k   e+++ k ++++    
  EGE27919.1 897 VWRHRPNKQVLDSniLILNKNIRALQNHHGpVFTKPGFETKKYKLTEHDmtaL 949
                 445555555553344456688999999***77776666666655555545552 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   8.3e-05      0.49      28      48 ..     116     135 ..     101     224 .. 0.78
   2 ?   -0.3   0.0      0.19   1.2e+03       2      19 ..     381     398 ..     380     405 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.3e-05
                 HHHHHHHTTTTHHHHTS..HH CS
          HD  28 lllaaLlHDiGkgpfgdafek 48 
                 + laaLlHD+Gk + g ++ k
  EGE27919.1 116 ATLAALLHDLGKSTLG-FQHK 135
                 679**********966.3332 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHHHHHHH CS
          HD   2 leHsleVaklarrlaedl 19 
                 +eH l+Va +++ +a++l
  EGE27919.1 381 DEHLLGVASFTAHFARYL 398
                 69**********999987 PP

>> DUF1062  Protein of unknown function (DUF1062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   4.1e-05      0.24       3      50 ..     279     325 ..     278     337 .. 0.93
   2 ?   -2.9   0.0       1.9   1.1e+04      34      71 ..     977    1015 ..     965    1026 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
     DUF1062   3 AnkkklDvWliykCekCdstwnltileRvkvksidkellerllsNdke 50 
                 Ankk +D W   +C+  ++ w+  i  R   k+i+  +l++l++ dk 
  EGE27919.1 279 ANKKLVDFWQFDQCVIDSNAWQSRI-KRWANKAIKDPTLQALSAQDKP 325
                 9*********************998.7****************99985 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
     DUF1062   34 ksidkeller.llsNdkelareyafdlellrrnkaelde 71  
                  ++++++l++  + +N ++ +++y  ++ + +r +++l++
  EGE27919.1  977 EQLEHTLMHDlFGANKTNYINAYWREAGASNRIHTHLQQ 1015
                  566666665426789999999999999999988887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1098 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.37
# Mc/sec: 8886.25
//
Query:       EGE27920.1  [L=44]
Description: 50S ribosomal protein L34 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-25   86.4  12.9    9.6e-25   86.3  12.9    1.0  1  Ribosomal_L34  Ribosomal protein L34


Domain annotation for each model (and alignments):
>> Ribosomal_L34  Ribosomal protein L34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3  12.9   5.4e-29   9.6e-25       1      44 []       1      44 []       1      44 [] 0.99

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 5.4e-29
                   ---S----HHHHHCSSSHHHHHHSHHHHHHHHHHHTTSSS-SCC CS
  Ribosomal_L34  1 mkrtyqPskrkRkrkhGFraRmstknGrkvLkrRraKGRkrLsv 44
                   mkrt+qPs +kRkr+hGFraRm+tk+Gr+vL+rRraKGR+rL+v
     EGE27920.1  1 MKRTFQPSVLKRKRTHGFRARMATKKGRQVLARRRAKGRHRLTV 44
                   9*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 394.36
//
Query:       EGE27921.1  [L=467]
Description: chromosomal replication initiator protein DnaA [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-58  196.5   0.0    8.1e-58  195.8   0.0    1.3  1  Bac_DnaA      Bacterial dnaA  protein
    1.4e-31  108.4   0.1    3.4e-30  103.9   0.0    2.4  2  Bac_DnaA_C    Bacterial dnaA protein helix-turn-helix
      1e-09   38.0   0.2      2e-09   37.0   0.2    1.6  1  DnaA_N        DnaA N-terminal domain
    1.9e-09   37.5   0.0    3.7e-09   36.6   0.0    1.4  1  IstB_IS21     IstB-like ATP binding protein
    6.9e-07   29.4   1.1    1.5e-05   25.0   0.9    2.4  2  ATPase_2      ATPase domain predominantly from Archaea
    6.9e-06   26.5   0.0    1.7e-05   25.3   0.0    1.6  1  AAA           ATPase family associated with various cellular 
    2.1e-05   24.8   0.1     0.0063   16.8   0.0    2.5  2  AAA_22        AAA domain
    5.4e-05   23.2   0.0     0.0001   22.3   0.0    1.5  1  AAA_14        AAA domain
    0.00046   20.6   0.0     0.0011   19.3   0.0    1.7  1  AAA_16        AAA ATPase domain
     0.0037   17.0   0.0      0.014   15.1   0.0    1.8  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
     0.0048   15.9   0.3     0.0057   15.6   0.3    1.3  1  Kinesin       Kinesin motor domain
     0.0086   16.5   0.3      0.042   14.2   0.3    2.3  1  RNA_helicase  RNA helicase
  ------ inclusion threshold ------
      0.013   14.5   0.0      0.022   13.7   0.0    1.4  1  AFG1_ATPase   AFG1-like ATPase
      0.021   14.8   0.2        1.4    8.9   0.1    2.6  2  ResIII        Type III restriction enzyme, res subunit
      0.024   14.4   0.0      0.057   13.1   0.0    1.6  1  AAA_30        AAA domain
      0.035   13.8   0.0      0.067   12.9   0.0    1.4  1  AAA_24        AAA domain
      0.042   13.5   0.2      0.091   12.4   0.0    1.7  2  SRP54         SRP54-type protein, GTPase domain
      0.047   13.1   0.3        2.7    7.4   0.0    2.4  2  TniB          Bacterial TniB protein
      0.049   14.0   0.2        2.3    8.5   0.0    2.4  2  AAA_19        AAA domain
       0.05   12.8   0.0        0.1   11.8   0.0    1.5  1  NB-ARC        NB-ARC domain
      0.064   13.2   0.1       0.22   11.4   0.1    2.0  1  NACHT         NACHT domain
      0.081   13.4   0.0       0.39   11.2   0.0    2.2  2  ABC_tran      ABC transporter
       0.11   12.5   0.0       0.62   10.1   0.0    2.1  1  AAA_5         AAA domain (dynein-related subfamily)
       0.12   12.1   0.2        0.5   10.1   0.2    2.1  1  DEAD          DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.8   0.0   1.1e-60   8.1e-58       2     215 ..     128     344 ..     127     347 .. 0.93

  Alignments for each domain:
  == domain 1  score: 195.8 bits;  conditional E-value: 1.1e-60
                 -SS-SGGG----TTTHHHHHHHHHHHHS.TTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-S CS
    Bac_DnaA   2 nkrytFetFviGasnrlAlaaalkvaea.pgkkynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkvD 99 
                 ++ +tF+ F++G+sn  A++a  +++ + ++++y P+fiyg++GlGktHL++a++++ ++    ++  Y t ++F +  ++a r++++ ++ ++++++D
  EGE27921.1 128 DPGFTFDVFIKGKSNASAYNACNELSRKeSKHNYGPIFIYGSSGLGKTHLMHAMAHRYQK--YGKQFFYFTKDHFYKITLEAFRTNDIVQMEKEICQAD 224
                 5679**********************9846669**********************98765..67889******************************** PP

                 EEEEE-GGGGTT-H..HHHHHHHHHHHHHH..TTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTHHHHH CS
    Bac_DnaA 100 vLliDDiqflagke..ktqeelfhtfnall..eegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeevlefi 194
                 +L+iDD++ ++g +  k+ e+l+++f+++   +++kqvvl+sDr+P++++++ +r  sr++  l+  ieppd+e+r++il+kk+++ +l +p+e + ++
  EGE27921.1 225 LLIIDDVHMVSGSKapKVTEILMKLFDTFSagNTQKQVVLASDRPPSQMTSFGERYISRLSSCLQLSIEPPDMEMRIQILEKKAQMLNLLLPRECALYM 323
                 **********975534899********997446889*************************************************************** PP

                 HHH--S-HHHHHHHHHHHHHH CS
    Bac_DnaA 195 aervtdnvRelegalnrlkay 215
                 a+++  +vR legal+r+++ 
  EGE27921.1 324 AQNLPPDVRGLEGALKRVQLS 344
                 *****************9875 PP

>> Bac_DnaA_C  Bacterial dnaA protein helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.32   2.4e+02      16      42 ..     301     327 ..     296     330 .. 0.81
   2 !  103.9   0.0   4.6e-33   3.4e-30       2      69 .]     376     443 ..     375     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.32
                 HHHHHS----CSSHHHHHHHHHHHHHT CS
  Bac_DnaA_C  16 vedlkskkRkkeiveaRqiamylarel 42 
                 ++ l +k +  ++  +R  a y+a++l
  EGE27921.1 301 IQILEKKAQMLNLLLPRECALYMAQNL 327
                 5566677789999**********9987 PP

  == domain 2  score: 103.9 bits;  conditional E-value: 4.6e-33
                 .HHHHTHHHHTT--HHHHHS----CSSHHHHHHHHHHHHHTS---HHHHHHHHT-STTHHHHHHHHHH CS
  Bac_DnaA_C   2 ekIieaVaeyfgvsvedlkskkRkkeiveaRqiamylareltdlslpeIGkefggrdHsTVihaikki 69 
                 e+I + Vaey+++s++dl+skkR + i+++Rq+am l+relt +s+peIG+ fggrdH+TV+ha++ki
  EGE27921.1 376 ENIRDLVAEYYEISPKDLMSKKRARYIARPRQMAMALIRELTRDSFPEIGQVFGGRDHTTVMHACEKI 443
                 89*****************************************************************8 PP

>> DnaA_N  DnaA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.2   2.7e-12     2e-09       2      62 ..      21      80 ..      20      82 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 2.7e-12
      DnaA_N  2 elWsavlerLkkelgeqsfdtWikplklfalknngltlivpneFardwiesnYldriaell 62
                 +W+ +l +L+  + ++ +++Wi+plk+ ++++++l l +pn      +++nYl++i++l+
  EGE27921.1 21 RVWQLCLPDLQFAMADKDYRQWIAPLKA-EVNDTELLLLAPNMMWVRHVKDNYLSQITDLA 80
                69*************************6.575777***********************987 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   4.9e-12   3.7e-09      49     153 ..     163     272 ..     133     279 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 4.9e-12
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdlgllpldqaea.....ellfeviekryerrs 142
                  i + G sG GK+hl  a++++  + g++ ++++ + + +    a r + + ++ k++ ++dlli+Dd+ ++  ++a +      +lf+  ++   ++ 
  EGE27921.1 163 PIFIYGSSGLGKTHLMHAMAHRYQKYGKQFFYFTKDHFYKITLEAFRTNDIVQMEKEICQADLLIIDDVHMVSGSKAPKvteilMKLFDTFSAGNTQKQ 261
                 5899*****************************999999988888889999999**************9887666554311111344555555566666 PP

   IstB_IS21 143 iiitsnlpfae 153
                 ++++s+ p ++
  EGE27921.1 262 VVLASDRPPSQ 272
                 77777766665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.9     2e-08   1.5e-05       9     112 ..     150     252 ..     147     267 .. 0.61
   2 ?   -2.8   0.0       6.6     5e+03     179     209 ..     394     425 ..     390     437 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2e-08
    ATPase_2   9 keleeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekal..giavpkaeleeilkeksklvfka 105
                 +el +  ++ ++ ++fiYG+ g GKt L+  ++ + ++++k+ +y+++ + ++i +l+ f    ++  ++ek +  ++ +  + ++ ++ +k  +v++ 
  EGE27921.1 150 NELSRKESKHNYGPIFIYGSSGLGKTHLMHAMAHRYQKYGKQFFYFTKDHFYKI-TLEAFRT--NDIVQMEKEIcqADLLIIDDVHMVSGSKAPKVTEI 245
                 6777777888999***************************97777766555544.3444411..11111222222233333333333444666666666 PP

    ATPase_2 106 ielllek 112
                 + +l++ 
  EGE27921.1 246 LMKLFDT 252
                 6666655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.6
    ATPase_2 179 elegrhky.ilvddldketalnflkegfkele 209
                 + ++r++y +  + +    +++++++ f e+ 
  EGE27921.1 394 MSKKRARYiARPRQMAMALIRELTRDSFPEIG 425
                 56788888778888877777777777777763 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.2e-08   1.7e-05       2     113 ..     165     270 ..     164     288 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.2e-08
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvk 97 
                  +yG  G GKT l++a+a+     g +f+ +    +    +   + +++++++  ke  +   l+iD+++ + +s+       + +v + L++ +d ++
  EGE27921.1 165 FIYGSSGLGKTHLMHAMAHRYqkyGKQFFYFTKDHFY--KITLEAFRTNDIVQMEKEICQADLLIIDDVHMVSGSK-------APKVTEILMKLFDTFS 254
                 68******************74334667777777777..34555566777777655544559**********9999.......8999999999999999 PP

                 TSSSTEEEEEEESSGG CS
         AAA  98 kkeskvivigatnrpd 113
                   + +  v++a+ rp 
  EGE27921.1 255 AGNTQKQVVLASDRPP 270
                 9988899999999964 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.5e-06    0.0063       6      51 ..     162     209 ..     157     223 .. 0.79
   2 ?    5.7   0.0     0.022        17      90     121 ..     222     258 ..     204     266 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.5e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsst 51 
                 g ++++G sG GKT+l+  ++++++++ k+     +++++++tl +  
  EGE27921.1 162 GPIFIYGSSGLGKTHLMHAMAHRYQKYGKQFFyfTKDHFYKITLEAFR 209
                 7799********************877555448878888877777665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.022
      AAA_22  90 avielliiDEaqhlr.s..eealeeLrsllnl...srk 121
                 ++  lliiD+++ ++ s  +++ e L +l++    + +
  EGE27921.1 222 QA-DLLIIDDVHMVSgSkaPKVTEILMKLFDTfsaGNT 258
                 44.89*********663777777777777775544444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.4e-07    0.0001       3      88 ..     162     251 ..     160     273 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.4e-07
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelilek.lkeekktylflDEiqev.....pewekalkslvd 88 
                  +++i G    GKT l++ +++++    ++++y++ d+  + +l+ +++++ + +ek +   +  +l++D +++v     p++ ++l +l+d
  EGE27921.1 162 GPIFIYGSSGLGKTHLMHAMAHRYQKYGKQFFYFTKDHFYKITLEAFRTNDIVQMEKeI--CQADLLIIDDVHMVsgskaPKVTEILMKLFD 251
                 5789****************988887889********9888888877544434444423..35799********966666666666666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.5e-06    0.0011      25      99 ..     162     226 ..     147     289 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.5e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawre 99 
                 + ++++G sG GK+ l+ + +++++k g  f++ + d++     y + ++a+ r   + q++ e      +a+  
  EGE27921.1 162 GPIFIYGSSGLGKTHLMHAMAHRYQKYGKQFFYFTKDHF-----YKITLEAF-RTNDIVQMEKE----ICQADLL 226
                 789*******************99999888888888888.....77799999.66888888877....4444444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.9e-05     0.014      31     105 ..     159     247 ..     148     256 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
      RuvB_N  31 ealdhvllyGpPGlGkttlakiiakelgvk...l.kitsgP....vle..kagdlaalltnleekdvlfideihrls....raveevly 105
                 ++   +++yG+ GlGkt l + +a+  +     +   t       +le  +++d++ + +++ + d+l id++h +s    ++v e+l 
  EGE27921.1 159 HNYGPIFIYGSSGLGKTHLMHAMAHRYQKYgkqFfYFTKDHfykiTLEafRTNDIVQMEKEICQADLLIIDDVHMVSgskaPKVTEILM 247
                 4455689*****************87765411131334433111133344899*********************986222245666665 PP

>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   7.6e-06    0.0057      25      95 ..     113     181 ..      89     420 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.6e-06
                 TCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC CS
     Kinesin  25 keeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk 95 
                 k+++kk+   +    +  f+Fd vf + +++++ y+ + ++l ++  +   + if YG +g GKT+ m+  
  EGE27921.1 113 KKTSKKTGVVEGLPIDPGFTFD-VFIKGKSNASAYNAC-NELSRKESKHNYGPIFIYGSSGLGKTHLMHAM 181
                 33444444444445567899*9.566677899999997.999999999999***************99875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   5.6e-05     0.042       1      45 [.     164     201 ..     164     267 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.6e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl.......klkkkdsvysrnpeddfwd 45 
                   i++yG+sg GK++l++ +a++ +k         k              d+++
    EGE27921.1 164 IFIYGSSGLGKTHLMHAMAHRYQKYGkqffyftK--------------DHFY 201
                   79***************99988844333333331..............2222 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     3e-05     0.022      52     156 ..     152     251 ..     133     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
  AFG1_ATPase  52 fgrkrksvepvrglYlwGgvGrGKtylmdlffeslpvekkrrvhfhafmarvhdeltklrkekdplaivadrlaeearvlCfDEfevsDiadamllsr 149
                  + rk+ s++    ++++G  G GKt+lm  +       +k    f  f ++ + ++t  + +++ + ++ +++++ a++l +D+ ++   + a  ++ 
   EGE27921.1 152 LSRKE-SKHNYGPIFIYGSSGLGKTHLMHAMA---HRYQKYGKQFFYFTKDHFYKITLEAFRTNDIVQMEKEICQ-ADLLIIDDVHMVSGSKAPKVTE 244
                  55666.44467789**************8654...445667778999999999999999999***********95.67******99988777777776 PP

  AFG1_ATPase 150 LleaLfa 156
                  +l  Lf+
   EGE27921.1 245 ILMKLFD 251
                  6666664 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1    0.0018       1.4      18      61 ..     155     195 ..     140     222 .. 0.67
   2 ?    3.6   0.1      0.08        60     125     155 ..     215     247 ..     195     264 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0018
                 .....TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEE CS
      ResIII  18 klkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflv 61 
                 k ++++   ++i    G GKT ++ +++ r++k gk  + +f  
  EGE27921.1 155 KESKHNYGPIFIYGSSGLGKTHLMHAMAHRYQKYGK--Q-FFYF 195
                 3332334478899999**************998654..2.3333 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.08
                 ..HHHTTT-SEEEEETGGGTTS.T..TTHHHHH CS
      ResIII 125 seellrdrfdviiiDEaHrlgakk..swreile 155
                 + e++  + d++iiD +H ++++k  +++eil 
  EGE27921.1 215 QMEKEICQADLLIIDDVHMVSGSKapKVTEILM 247
                 5666777889*********99964557777643 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.6e-05     0.057      22     112 ..     165     246 ..     157     268 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.6e-05
      AAA_30  22 vltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaa 112
                 ++ G  G GKt+++ a+++ +++ g++ + ++  +    +L+    ++++ i ++ k+      + +++lli+D + mv+ +++ ++++++
  EGE27921.1 165 FIYGSSGLGKTHLMHAMAHRYQKYGKQFFYFTKDHFYKITLE---AFRTNDIVQMEKE------ICQADLLIIDDVHMVSGSKAPKVTEIL 246
                 67899***************************9999988888...5677777777643......5567***********988888877765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     9e-05     0.067       5      73 ..     164     230 ..     162     243 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9e-05
      AAA_24   5 iliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDt 73 
                 i+iyG+sg GKT+l+  +       g++++++  ++ + ++    f          +++v+ ++e  + + l+iD 
  EGE27921.1 164 IFIYGSSGLGKTHLMHAMahryqkyGKQFFYFTKDH-FYKITLEAFR--------TNDIVQMEKEICQADLLIIDD 230
                 78**************99888888888888888887.4444444444........345566666666666666665 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       9.5   7.1e+03     111     145 ..      87     121 ..      80     122 .. 0.64
   2 ?   12.4   0.0   0.00012     0.091       4      41 ..     164     201 ..     162     263 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9.5
                 HHSSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEE CS
       SRP54 111 vvkpdevllvldattgqeavkqakaFkeavgitgv 145
                 v+k+ ++ +v +++    a k+ak+ k++ + tgv
  EGE27921.1  87 VIKSVRIEMVASTIPNDPATKKAKTNKKTSKKTGV 121
                 55566666666666666677777777766666665 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00012
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSS CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkegkkvllvaaDtfR 41 
                 i + G  G GKT  +  +a++++k gk+    + D+f 
  EGE27921.1 164 IFIYGSSGLGKTHLMHAMAHRYQKYGKQFFYFTKDHFY 201
                 6789*************************999999884 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0036       2.7       9      61 ..     135     187 ..     131     193 .. 0.85
   2 ?    3.4   0.1     0.061        45     117     143 ..     220     246 ..     195     251 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0036
        TniB   9 rwigyprakeilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhpp 61 
                  +i+ +  +++ +  +eL ++ +++    + ++G s  GKt +++  a+++++
  EGE27921.1 135 VFIKGKSNASAYNACNELSRKESKHNYGPIFIYGSSGLGKTHLMHAMAHRYQK 187
                 5677777788888999999************************9998887765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.061
        TniB 117 elkvrvLiiDEihnllagsarkqrefl 143
                  +++ +LiiD +h +   +a k  e+l
  EGE27921.1 220 ICQADLLIIDDVHMVSGSKAPKVTEIL 246
                 38999********99877777776665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0031       2.3       7      38 ..     158     189 ..     153     197 .. 0.81
   2 ?    2.9   0.1      0.17   1.3e+02      95     118 ..     215     239 ..     193     255 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0031
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelg 38 
                 +++ +++++ +  G GKT++++++ + +++ g
  EGE27921.1 158 KHNYGPIFIYGSSGLGKTHLMHAMAHRYQKYG 189
                 577899*************8887777777665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
      AAA_19  95 eeekklqeeellivDEfqdvd.elq 118
                 + ek++ +++lli+D + +v+   +
  EGE27921.1 215 QMEKEICQADLLIIDDVHMVSgSKA 239
                 4567776888**********85554 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00013       0.1      16      51 ..     159     192 ..     144     246 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
                 TTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCB CS
      NB-ARC  16 delqslvvalvGmgGvGKttlakqilnksdevegrF 51 
                 ++ +   ++++G  G+GKt l++ + + +++  ++F
  EGE27921.1 159 HNYG--PIFIYGSSGLGKTHLMHAMAHRYQKYGKQF 192
                 3333..79*******************999999888 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00029      0.22       3      27 ..     164     188 ..     162     254 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00029
                 EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaeg 27 
                 +++ G +G GKT+L++ +a+  ++ 
  EGE27921.1 164 IFIYGSSGLGKTHLMHAMAHRYQKY 188
                 89*************9998876654 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       8.7   6.5e+03      62      96 ..      98     156 ..      78     162 .. 0.60
   2 ?   11.2   0.0   0.00053      0.39      15      60 ..     165     211 ..     162     289 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 8.7
                 EEE-SS--S-TTSBHHHH........................HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxx RF
    ABC_tran  62 gvlpqepqlfpeltvren........................esdeeiekalsklglke 96 
                 +++p +p  ++ +t++++                        +s++ +++a ++l+ ke
  EGE27921.1  98 STIPNDPATKKAKTNKKTskktgvveglpidpgftfdvfikgKSNASAYNACNELSRKE 156
                 44555555555555544455556666666666666666666666666666666666655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00053
                 EEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrke 60 
                  i G++G GK+ L+ ++a+ +++   +  +  kd  + ++le +r +
  EGE27921.1 165 FIYGSSGLGKTHLMHAMAHRYQKYGKQFFYFTKDHFYkITLEAFRTN 211
                 799******************98766665553333333555555444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00083      0.62       2      78 ..     164     235 ..     163     261 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00083
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEverae 78 
                 +++ G +G gK+ l+  +a+++   +++++y  +t+d      ++++ +    ++++ + +v +++    ++++l++D+v++++
  EGE27921.1 164 IFIYGSSGLGKTHLMHAMAHRYqkyGKQFFY--FTKDH-----FYKITL----EAFRTNDIV-QMEkeicQADLLIIDDVHMVS 235
                 799*******************855444444..44432.....222222....233333333.222234456666666666655 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00067       0.5     107     166 ..     209     266 ..     138     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00067
                 HHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 107 rlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlS 166
                 r  d+++ +k ++ q  +l++D +++++ +   +++ +il +l ++ + g+ q+qv++ S
  EGE27921.1 209 RTNDIVQMEK-EICQADLLIIDDVHMVSGS-KAPKVTEILMKLFDTFSAGNTQKQVVLAS 266
                 5667776566.69999************98.89999999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.37
# Mc/sec: 3757.36
//
Query:       EGE27922.1  [L=385]
Description: DNA polymerase III, beta subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-27   94.1   0.0    1.5e-23   83.2   0.0    2.7  2  DNA_pol3_beta    DNA polymerase III beta subunit, N-terminal 
    1.6e-24   86.4   0.2    1.2e-22   80.3   0.1    3.2  3  DNA_pol3_beta_2  DNA polymerase III beta subunit, central dom
    3.3e-22   78.6   1.2      1e-19   70.5   0.0    2.5  2  DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal 


Domain annotation for each model (and alignments):
>> DNA_pol3_beta  DNA polymerase III beta subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   2.5e-27   1.5e-23       1     120 [.       1     122 [.       1     123 [. 0.97
   2 !    8.0   0.0    0.0005         3       5      82 ..     133     210 ..     130     241 .. 0.76

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 2.5e-27
                    -EEEEEHHHHHHHHHHHHTTSSSTTSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEESEEE..EE-EEEEEEHHHHHHHHHHSSTTSEEEEEEET CS
  DNA_pol3_beta   1 mkftiereellkelekvakvisnRntlpiLsgvllevkdsqlsltgtDleisiestisaese..eeegkvlvparllldivkaLpndkkvkisvne 94 
                    mk++i+r+ llk+++ v k+ ++R    iL++++l  ++  l+lt++Dle+++ +++++ ++   + g++++pa +++ ++k+Lp+ ++v i   e
     EGE27922.1   1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALPKDgcIQAGSTTLPAEMFFSVCKSLPE-ETVVIDAPE 95 
                    9***********************************************************9999899*******************.9999*9988 PP

                    .TEEEEEEETTEEEEEE-BEGGGS--- CS
  DNA_pol3_beta  95 .qklliiksgssrfslstlsaeeypnl 120
                     + + ii+sg  r++ls l+a+++p++
     EGE27922.1  96 dTTRCIITSGTGRYTLSCLPADDFPTI 122
                    67889999*****************86 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0005
                    EEHHHHHHHHHHHHTTSSSTTSSGGGGEEEEEEETTEEEEEEE-SS.EEEEEEEESEEEEE-EEEEEEHHHHHHHHHHS CS
  DNA_pol3_beta   5 iereellkelekvakvisnRntlpiLsgvllevkdsqlsltgtDle.isiestisaeseeeegkvlvparllldivkaL 82 
                    i++ +l + ++++  ++ ++ +   L+g+l ++ +++l+  +tD   + +  ++ +e    + +v++p++ ++++ + L
     EGE27922.1 133 ISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGENTLTAVATDGHrLAVAHRLLNETY-APNQVIIPGKAVAELERLL 210
                    6677777888888888888999999*******************862666666666666.999*****99887765544 PP

>> DNA_pol3_beta_2  DNA polymerase III beta subunit, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.043   2.6e+02       2      45 ..       5      48 ..       4     103 .. 0.84
   2 !   80.3   0.1   1.9e-26   1.2e-22       2     116 .]     133     262 ..     132     262 .. 0.79
   3 ?   -2.7   0.0       1.1   6.6e+03      70      97 ..     316     345 ..     306     353 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.043
                     EEHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEECCEEEEEEE- CS
  DNA_pol3_beta_2  2 lkqkelkelieqvafaasedetrpvLtGvrleieedklllaaTd 45
                     ++ + l ++i+ v  aa +     +L  ++l +ee  l+l+a d
       EGE27922.1  5 INRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASD 48
                     56777888888888888888888888888888888888888777 PP

  == domain 2  score: 80.3 bits;  conditional E-value: 1.9e-26
                      EEHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEECCEEEEEEE-SSEEEEEEEEEEECTTCEEEEEEEHHHHHHHHHHHTS......SSSEEEE CS
  DNA_pol3_beta_2   2 lkqkelkelieqvafaasedetrpvLtGvrleieedklllaaTdghRlavrkleleeeeedeasvivPaktlaelaklled......neeqvkl 89 
                      ++q +l +li++++fa++++++r++LtG+ + i e++l+++aTdghRlav++  l+e+     +vi+P k++ael++ll +        + v+l
       EGE27922.1 133 ISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGENTLTAVATDGHRLAVAHRLLNETYA-PNQVIIPGKAVAELERLLIElaktvdDSNIVEL 225
                      78899*********************************************9988877766.58**************98763333323444555 PP

                      EEE...........SSEEEEEETTEEEEEE-BSS---B CS
  DNA_pol3_beta_2  90 als...........egkirfevgnvrltsrlldgkfPd 116
                       ++           ++ +  e+  v+l +rl++gkfPd
       EGE27922.1 226 GFDaeflqvglvlkDEDTDNEI-TVKLSARLIEGKFPD 262
                      5558888766666533333333.35678999*****98 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
                      HHHHHHHHHHHTS..SSSEEEEEEESSEEE CS
  DNA_pol3_beta_2  70 aktlaelaklled..neeqvklalsegkir 97 
                       + l e++ +l    ++++++l+++e ++r
       EGE27922.1 316 NRNLGEAEEMLGVnySGDAIELTFNEAYLR 345
                      444555555543323455555555555444 PP

>> DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.3    0.0014       8.1      12      55 ..       3      51 ..       1      55 [. 0.79
   2 !   70.5   0.0   1.7e-23     1e-19       1     121 []     264     384 ..     264     384 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0014
                     EEEEHHHHHHHHHHHHTTSSTSTG.....EEEEEEETTEEEEEEEETTS CS
  DNA_pol3_beta_3 12 vtvdlkelkealkRvalladeknr.....kvrLsleegqlklsaensev 55
                     ++++++ l++a++ v   ad++ r     +++L leeg l+l+a++ e 
       EGE27922.1  3 LSINRDLLLKAINLVVKAADKRHRfailaNIKLVLEEGFLTLTASDLEL 51
                     6788999999999998888866643333379*************99886 PP

  == domain 2  score: 70.5 bits;  conditional E-value: 1.7e-23
                      CCCS-SS-SEEEEEEHHHHHHHHHHHHTTSSTSTGEEEEEEE.TTEEEEEEEETTSEEEEEEEEEBEESS-EEEEEEHHHHHHHHHHH-SSEEE CS
  DNA_pol3_beta_3   1 krllPkefkkkvtvdlkelkealkRvalladeknrkvrLsle.egqlklsaensevgeaeEevdvnyeGeeleiafNvsYlldalkaleteeve 93 
                      +r++P++++k+v+ + +e +++l R+++l  + + +v ++++  +  k+ ++n + geaeE + vny+G+ +e+ fN  Yl  +l++le+ ev 
       EGE27922.1 264 RRVIPANNDKNVLFNKDEAVDVLRRISVLNTKEEPGVLMNFDtTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-EVC 356
                      69*****************************9999*******88999*****************************************98.589 PP

                      EEESSTTS-EEEEETTEESEEEEE--BB CS
  DNA_pol3_beta_3  94 lqltdstkpvllsevedesvkyvilpmr 121
                      l+l+++++p+l+ +v+d+   yvi+pmr
       EGE27922.1 357 LELNQPSSPALIYQVGDDLHRYVIMPMR 384
                      ***************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2778.94
//
Query:       EGE27923.1  [L=402]
Description: DNA replication and repair protein RecF [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-22   78.7   0.1    5.6e-22   78.3   0.1    1.1  1  SMC_N     RecF/RecN/SMC N terminal domain
    2.5e-09   37.4   0.3    1.2e-07   31.8   0.3    2.5  1  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    1.7e-08   34.6   0.0    1.8e-08   34.5   0.0    1.3  1  AAA_15    AAA ATPase domain
      7e-07   28.8   0.8      0.019   14.3   0.0    2.2  2  DUF2813   Protein of unknown function (DUF2813)
    2.5e-06   28.0   1.2      0.014   15.8   0.0    2.6  2  AAA_16    AAA ATPase domain
      5e-06   27.2   0.0    1.3e-05   25.8   0.0    1.7  2  AAA_23    AAA domain
      7e-05   22.5   0.0     0.0009   18.9   0.0    2.5  2  AAA_29    P-loop containing region of AAA domain
    0.00078   20.0   0.7      0.022   15.3   0.1    2.6  3  ABC_tran  ABC transporter
     0.0011   19.3   2.1       0.34   11.2   0.1    3.1  2  AAA_22    AAA domain
     0.0042   15.8   0.0      0.015   14.0   0.0    1.8  2  AAA_13    AAA domain
  ------ inclusion threshold ------
      0.026   14.5   0.1        3.9    7.3   0.0    2.3  2  ATPase_2  ATPase domain predominantly from Archaea
      0.062   12.9   0.0       0.12   12.0   0.0    1.4  1  AAA_27    AAA domain
      0.074   13.0   0.1       0.23   11.4   0.0    1.9  2  NACHT     NACHT domain
       0.17   12.1   0.1       0.51   10.6   0.1    1.9  1  AAA_28    AAA domain


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.1   4.4e-25   5.6e-22       1     204 [.       1     361 [.       1     373 [. 0.92

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 4.4e-25
                 EEEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   1 vlkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsi 99 
                 ++k+l+i++ +++  k+v l ++   + ivG+NGSGK++ll+A+ F+L+    k++r+++ ++ i + +++a++  a+ +    +e+         + i
  EGE27923.1   1 MIKQLQIHELRNL--KQVNLTLAA-CNLIVGANGSGKTSLLEAV-FLLS--RGKSFRHHEPKRYIRH-HQSACTVWARTKF---EESC-------TLAI 82 
                 69***********..688888877.9******************.****..7889***********9.6666666666655...2333.......4889 PP

                 EEEEETTSE..EEEEETTEEE-H.HHHHHHHHCTT-STT............................................................ CS
                 xxxxxxxxx..xxxxxxxxxxxx.xxxxxxxxxxxxxxx............................................................ RF
       SMC_N 100 srrvkrkge..seykingkevtk.kevsellesagiske............................................................ 135
                 ++++ ++g+  s  ++n+++v+  + +s  l++  i++                                                             
  EGE27923.1  83 QKKLDETGKsdSILRFNEHTVSTqSTLSFHLPTLLIDPVsmslldegsisrrqmldwltfhiqpkfyhqwlqyqrllkqrnallkhpsvhhklpelfaw 181
                 999988888446677899999875889999*******999*********************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  EGE27923.1 182 deqlgfyahalhehrlavfdqwtryfdemikqllpeyhsslslqylagfdytkplsqtlkmrlnqdmslgytrigahradinvkihsqnnqgqtiheqa 280
                 *************************************************************************************************** PP

                 ..CS-HHHHHHHHHHHHHH.............HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 ..xxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ..lLSgGektLvalaLlfA.............iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                    LS+Gek+L+  aL ++             +q     p++l+D++da+LDe  ++++ + + +    +Q i++sl+ ++ +k
  EGE27923.1 281 thILSRGEKKLLITALKLSqlklmchaidkipMQ-TAHPPVVLIDDLDAELDEDAIEILLKTVFSLP--CQAIITSLNVQTHQK 361
                 ************************9999985333.3445899*********************9998..********9988776 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.3   9.6e-11   1.2e-07       2     295 ..      24     352 ..      23     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 9.6e-11
      AAA_21   2 nvliGpNgsGKSnLLdaldllarl..drdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv..eeklssvetlles 96 
                 n+++G+NgsGK++LL+a  ll+r   +r+ e+  +++    + ++      ++ +e++ +++i ++l++  + + +lr+++  v  + +ls   ++l++
  EGE27923.1  24 NLIVGANGSGKTSLLEAVFLLSRGksFRHHEPKRYIR----HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVstQSTLSFHLPTLLI 118
                 99****************8887657777777777777....99999999999999999999999999*****************999999999999999 PP

      AAA_21  97 gllldkrsleeedvfnpeargirg.gvsvfslkelsvsepndlqfgkaltditsrawsll.llldglrke.......rigllnifadyfgfakekrllq 186
                  + + ++ +e      ++ +     +   f++++l +    ++ +  +   +++++   l  +++ l+ +       r ++++ + +yf   ++k+ll 
  EGE27923.1 119 DPVSMSLLDEGSISRRQMLDWLTFhIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPELfAWDEQLGFYahalhehRLAVFDQWTRYF-DEMIKQLLP 216
                 99999999999999999999865404456788888888888888877777777776654336666666668899999999999997777.777777777 PP

      AAA_21 187 rlvrslklveielsdlgegeeliasvderlrer...............gvvflengdgqelparel....SdGtkrllalltallralkkg........ 258
                 ++ +sl+l+ +   d ++   +  +  + +                  +v ++  ++ +++   ++    S G k+l  l+tal     k         
  EGE27923.1 217 EYHSSLSLQYLAGFDYTKPLSQTLKMRLNQ--DmslgytrigahradiNVKIHSQNNQGQTIHEQAthilSRGEKKL--LITALKLSQLKLmchaidki 311
                 777777776665555543333332222222..24467799999****75555555555555555557889*******..9999999999999******* PP

      AAA_21 259 .......sllliDEpEngLHPkllrrll.ellkelsrngaQvilt 295
                        +++liD++++ L+  +++ ll +++++      Q i+t
  EGE27923.1 312 pmqtahpPVVLIDDLDAELDEDAIEILLkTVFSLP----CQAIIT 352
                 *******************9999999995555444....455555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.4e-11   1.8e-08       1      84 [.       1     110 [.       1     345 [. 0.74

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.4e-11
      AAA_15   1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFlnnkekkn....kkvikiekedleifeniseskdikIdvef............ 83 
                 M Ik+++i   R lk+v + l    ++++G+N+sGK+s+lea  ++l++ +++     k +i   ++ + ++  ++++ +  ++++             
  EGE27923.1   1 M-IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAV-FLLSRGKSFRhhepKRYIRHHQSACTVWARTKFEESCTLAIQKkldetgksdsil 96 
                 8.9********************.*******************.5555554555789977777777777777777777777777766444444444444 PP

      AAA_15  84 .............a 84 
                               
  EGE27923.1  97 rfnehtvstqstlS 110
                 44444444444440 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.5e-05     0.019       3      47 ..       2      45 ..       1      67 [. 0.84
   2 !   12.9   0.3   3.9e-05     0.049     245     319 ..     278     353 ..     247     362 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
     DUF2813  3 LerieisGFRGinrLSlsleentvLiGENaWGKSSLldALsliln 47
                +++++i   R +++  l+l + + ++G N  GK SLl+A  l+ +
  EGE27923.1  2 IKQLQIHELRNLKQVNLTLAACNLIVGANGSGKTSLLEAVFLL-S 45
                68999**********************************8764.4 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.9e-05
     DUF2813 245 kslnqllkqeeekslrlll.lgllatllqakgkvelkriarPilllEdpearLHPtmlaiaWellellPlQkiltT 319
                 ++ +++l++ e+k l ++l l +l+ + +a  k+ ++  + P++l++d++a L    + i+ + + +lP+Q i+t 
  EGE27923.1 278 EQATHILSRGEKKLLITALkLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAIITS 353
                 34455566566666666662345556667777888999999********************************996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-05     0.014       8      51 ..       6      47 ..       3     110 .. 0.69
   2 !   10.4   0.2   0.00049      0.62     109     158 ..     290     342 ..     176     351 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-05
      AAA_16  8 eleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51
                ++++L++ l++v+     + l++G+ G+GK+sl+++++  l++ 
  EGE27923.1  6 QIHELRN-LKQVNLTLAACNLIVGANGSGKTSLLEAVF-LLSRG 47
                6666666.4556666667889****************9.44433 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00049
      AAA_16 109 pelagaeasrllellkrll.allsrderplvlvlDdlq.wadeaslql.laaL 158
                 + l  a++ + l l+ +++ +   ++++p v+++Ddl+  +de+  ++ l++ 
  EGE27923.1 290 KLLITALKLSQLKLMCHAIdKIPMQTAHPPVVLIDDLDaELDEDAIEIlLKTV 342
                 33333333777888999998888899************888888777755555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   9.9e-09   1.3e-05       3      46 ..       6      48 ..       4     122 .. 0.73
   2 ?   -2.5   0.0       4.6   5.9e+03      81      97 ..     270     283 ..     237     339 .. 0.57

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 9.9e-09
      AAA_23  3 kienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLyge 46
                +i+ +r ++ +++ +    +lI+G NG+GKT++l+A+ l   g+
  EGE27923.1  6 QIHELRNLKQVNLTLA-ACNLIVGANGSGKTSLLEAVFLLSRGK 48
                5555666665555554.689****************99876664 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.6
      AAA_23  81 nkdgrytrsiererels 97 
                 n++g   ++i+++ + +
  EGE27923.1 270 NNQG---QTIHEQATHI 283
                 2222...2222222222 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     7e-07    0.0009      13      45 ..      11      44 ..       2      52 .. 0.81
   2 ?    0.3   0.0      0.46   5.9e+02       2      13 ..     132     143 ..     131     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7e-07
      AAA_29 13 dg.htieidlkgatlltGpsGsGKSTllDAiqal 45
                ++ ++++++l+   l++G++GsGK++ll A+  l
  EGE27923.1 11 RNlKQVNLTLAACNLIVGANGSGKTSLLEAVFLL 44
                55567777877889***************98765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.46
      AAA_29   2 krlqlvNWgtfd 13 
                 +r q+++W tf+
  EGE27923.1 132 SRRQMLDWLTFH 143
                 689********9 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.7e-05     0.022       3      34 ..      15      44 ..      13      67 .. 0.79
   2 ?   -1.5   0.0       2.7   3.4e+03      86     134 ..      80     128 ..      45     130 .. 0.72
   3 ?    2.0   0.0      0.21   2.7e+02      93     120 ..     267     295 ..     157     305 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.7e-05
                EEEEEEETTSEEEEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  3 nvslklkegekvaivGenGaGKStLlkllagl 34
                +v+l+l +  +  ivG nG+GK++Ll+++  l
  EGE27923.1 15 QVNLTLAA--CNLIVGANGSGKTSLLEAVFLL 44
                55555554..4569************998665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.7
                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                  ++ +kl+ +++ d++++ + +++S        l  +l+   ++ llDE
  EGE27923.1  80 LAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTLLIDPVSMSLLDE 128
                 4566777777778888877788888877777888888888888888887 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.21
                 TTGGTTCBGESTTS.GGS-HHHHHHHHHH CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
    ABC_tran  93 glkelkdtvvkssp.ssLSgGqkqrvala 120
                   ++ + +++++++ + LS G+k+ +  a
  EGE27923.1 267 HSQNNQGQTIHEQAtHILSRGEKKLLITA 295
                 22223334444444499****99876544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00027      0.34       7      43 ..      23      59 ..      19     184 .. 0.72
   2 ?    6.0   0.3      0.01        13      44     114 ..     263     340 ..     236     362 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevv 43
                + +++G  G+GKT ll+ ++      ++  +e+++++
  EGE27923.1 23 CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYI 59
                668***************9998644444444444444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.01
      AAA_22  44 fvtlpsst.sskdllrellralglelka.....erlsseellealeqalrarav....ielliiDEaqh.lrseealeeLrs 114
                  v++ s++   +++ ++  ++l ++ k+       ls+  l+ +  + +    +    +++++iD+ +  l  e+a+e L +
  EGE27923.1 263 NVKIHSQNnQGQTIHEQATHILSRGEKKllitaLKLSQLKLMCHAIDKIP---MqtahPPVVLIDDLDAeL-DEDAIEILLK 340
                 55556666556677777777777777777765544444444433333333...344479**********9*.8888888844 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.2e-05     0.015      15      45 ..      20      50 ..       8     105 .. 0.78
   2 ?   -0.9   0.0      0.37   4.8e+02     494     505 ..     278     289 ..     209     342 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
      AAA_13 15 fkriNliYGwNGaGKTtLSrllrslelgete 45
                +   Nli G+NG+GKT+L ++   l++g+  
  EGE27923.1 20 LAACNLIVGANGSGKTSLLEAVFLLSRGKSF 50
                7889**************9998888777644 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.37
      AAA_13 494 sqaaetLSeGEk 505
                 +qa++ LS GEk
  EGE27923.1 278 EQATHILSRGEK 289
                 234444555554 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0031       3.9      17      49 ..      18      50 ..       6     110 .. 0.78
   2 ?    5.3   0.0     0.013        17      96     192 ..     297     389 ..     186     396 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0031
    ATPase_2 17 repneiyfiYGpegsGKtaLlkeiienledkdk 49
                 + +   +i G  gsGKt+Ll  +   ++ k++
  EGE27923.1 18 LTLAACNLIVGANGSGKTSLLEAVFLLSRGKSF 50
                44667889*************988766665554 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.013
    ATPase_2  96 k.eksklvfkaielllekikkkgkk....iiiiiDelqklidlglngaellvkeLlnl....iesltkekhlcvviclsSeglfiervyneselegrhk 185
                 k ++ kl+  ai+++ +       +    ++++iD+l        +  e l+k  ++l    i   ++ +    +++l S+g +      +++ + +++
  EGE27923.1 297 KlSQLKLMCHAIDKIPM-------QtahpPVVLIDDLDAEL--DEDAIEILLKTVFSLpcqaIITSLNVQTHQKILALKSDGFMAT----SAPNQRTAE 382
                 33333333333333333.......33345********9877..7778899999998642222566666777777888888888877....566555555 PP

    ATPase_2 186 yilvddl 192
                  ++ + +
  EGE27923.1 383 DLSYKMF 389
                 5666555 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.2e-05      0.12      27      84 ..      22      82 ..       2     112 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.2e-05
      AAA_27 27 dlhliyGpNEAGKstalrAisdllfG..ipertkdnf.lhdakkLrigavleeadgeelef 84
                   li+G+N +GK+++l+A+  l  G  + +++++ + +h+++   + a+ + ++  +l++
  EGE27923.1 22 ACNLIVGANGSGKTSLLEAVFLLSRGksFRHHEPKRYiRHHQSACTVWARTKFEESCTLAI 82
                5689***************988876633455555554246666666666665555555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018      0.23       4      31 ..      25      52 ..      23     150 .. 0.66
   2 ?   -1.7   0.0       1.9   2.4e+03      84      91 ..     320     327 ..     266     363 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
                EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT  4 ilqGeaGsGKTtLlqklalawaegklpq 31
                ++ G++GsGKT Ll+ + l+ + +   +
  EGE27923.1 25 LIVGANGSGKTSLLEAVFLLSRGKSFRH 52
                699***********99876655544444 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.9
                 EEEEE-ST CS
       NACHT  84 LlilDglD 91 
                 + ++D+lD
  EGE27923.1 320 VVLIDDLD 327
                 25666666 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1    0.0004      0.51       3      41 ..      25      66 ..      23     103 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0004
      AAA_28  3 vitGgestGKTtlleaLa..argypvv.pEaareileeklak 41
                 i+G+ ++GKT+llea    +rg +   +E+ r i  +++a+
  EGE27923.1 25 LIVGANGSGKTSLLEAVFllSRGKSFRhHEPKRYIRHHQSAC 66
                599************987666665544366666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2865.09
//
Query:       EGE27924.1  [L=819]
Description: DNA gyrase subunit B [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-59  197.8   0.0    1.5e-58  197.1   0.0    1.3  1  DNA_gyraseB    DNA gyrase B
    4.9e-30  103.5   0.2    1.1e-29  102.3   0.2    1.7  1  DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
    2.3e-28   99.2   0.0    4.3e-28   98.3   0.0    1.4  1  GyrB_insert    DNA gyrase B subunit insert domain
      1e-22   80.8   0.0    2.1e-22   79.8   0.0    1.6  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    4.8e-17   62.1   0.0    1.2e-16   60.8   0.0    1.7  1  Toprim         Toprim domain
    0.00046   20.0   0.1      0.001   18.9   0.1    1.6  1  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li


Domain annotation for each model (and alignments):
>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.0     5e-62   1.5e-58       1     173 [.     234     403 ..     234     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.1 bits;  conditional E-value: 5e-62
  DNA_gyraseB   1 GlkdfveelnkdkkelikevlsvegekaveevievevalqwtssysenilsFvNniatpeGGtHvdgfksaltktlneyakkkkllkkkeekisgedi 98 
                  Gl++fv+++n++k++l  ++++++++   ++ i vevalqw +sy+e++l+F+Nni++++GGtH++gf+salt++ln y++++++ kk++ +i+g+d 
   EGE27924.1 234 GLSEFVSYINGGKHTLN-DIFHFTADG--ADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSGFRSALTRCLNYYLDSENITKKEKVQITGDDA 328
                  89**********77775.599999999..777****************************************************************** PP

  DNA_gyraseB  99 regltavvsvkipepqFeGQTKekLgnsevksivekvvseeleafleenkeeakkilekaveaakareaarkare 173
                  reglta++svk+p+p+F +QTK+kL +sevks+ve+++ e+l+++l en+++ak i++k+++aa+ar+aarkare
   EGE27924.1 329 REGLTAIISVKVPDPKFSSQTKDKLVSSEVKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKARE 403
                  *************************************************************************98 PP

>> DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.2   3.8e-33   1.1e-29       2      63 .]     748     809 ..     747     809 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 3.8e-33
  DNA_gyraseB_C   2 kkveiqRfKGLGEmnpeqLweTTmdpetRrLlqvtiedaeeadelfstLmGkkvepRrefie 63 
                    ++v++qR+KGLGEmn+eqLweTTmdpe+Rr+l++tieda +ad+lfs LmG++vepRr fie
     EGE27924.1 748 RGVDVQRYKGLGEMNKEQLWETTMDPENRRMLKITIEDAIKADHLFSCLMGDEVEPRRIFIE 809
                    5799*********************************************************8 PP

>> GyrB_insert  DNA gyrase B subunit insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   1.4e-31   4.3e-28       2     164 ..     578     743 ..     578     746 .. 0.90

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 1.4e-31
  GyrB_insert   2 eLvvnedappisgeaLeeLvrqyrkaeaiIkRlsrrydeevLeallelpeldeedledeaaaeawakalearlnqeeekgeryeveve....edeeee 95 
                  +L+ ++d+pp++g aLe+L+++y + + i ++l+  y++++L+al+ +p+ld +++ d++a+++wa ale++ln   e + + +ve+      d+ ++
   EGE27924.1 578 QLFLSKDTPPVTGVALEKLLKDYSQSQVIKAHLQSKYPSHLLDALTLIPRLDVSAIGDKQAVDEWALALENQLND-LEPKLDAKVEAVqvlgGDDGNG 674
                  6999*********************************************************************73.33333333333211126999** PP

  GyrB_insert  96 kallevertqhGnekesvldadffesadYralaelaeklkgLieegAyikRGekeqavesFkealeWLl 164
                  ++l++v+ + h + ++++ld++f+ sadY +l +l+++ +  +++ A+ +RG+k   +++F+   + L+
   EGE27924.1 675 HWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVLSNSAFLRRGDKDFIIKDFEYLWQQLM 743
                  **************************************************************9999888 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   6.9e-26   2.1e-22       2     111 ..      45     187 ..      44     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 6.9e-26
                 HHHHHHHHHHHHHHHHHHH..HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT..............GTCSTTCHHCSTCHTSTSSSHHHHHHHHH CS
   HATPase_c   2 dekrLrqiisnlvdNavkf..atkageieveikaseddlvisveDnGiGipkedlk..............klfekfsqddstkrggggtGlGlsivkkl 84 
                 d ++L++++ ++vdNa+++  a++++ei + ++  + d ++sv DnG+Gip+++++              + ++kf++ +s+k++gg +G+G+s+v++l
  EGE27924.1  45 DGTGLHHMVFEVVDNAIDEalAGHCDEINIIVH--D-DESVSVMDNGRGIPVDIHPeegvsaaevimtvlHAGGKFDD-NSYKVSGGLHGVGVSVVNAL 139
                 7899***************66669999999999..5.99*****************************877777****.******************** PP

                 HHHTTTEEEE.....................EEETTTEEEEEEEEESS CS
   HATPase_c  85 velmgGeiwv.....................esepgrGttftftlple 111
                 ++++  +iw+                     e + + Gt+++f++ +e
  EGE27924.1 140 SKKLILTIWRdgyahtqnytdgvpdaplaklEPSTQTGTQVRFYPSFE 187
                 **8888****999999999888888877755444478*****998775 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0     4e-20   1.2e-16       1     102 [.     432     544 ..     432     545 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 4e-20
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS.TTEEEEE..ECTTTHHHHHH......HHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHT.. CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildlet.efkpvye..eiedkkkvlka......lkelakradeiilatDpDreGeaiawellevlk.. 88 
                 el+ivEg+s+ +++++ ++++ qa+++++G+il++e  +f++++   e+ + +++l++       ++ + r+++i+++tD+D++G++i+++ll+++   
  EGE27924.1 432 ELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERaRFDKMLSsaEVGTLITALGTgigpgeYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFrq 530
                 69***********************************999999999999999999999*9*9********************************99988 PP

                 ..HHHTTTEEEEEESS CS
      Toprim  89 ..ellenkigrvefse 102
                   el+e+  g++++++
  EGE27924.1 531 mpELIER--GHIYIAQ 544
                 8888888..9999876 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   3.4e-07     0.001       5      48 ..      51      94 ..      47     159 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.4e-07
  HATPase_c_3  5 kAlaelvdNsld....AdaenvkievnknrgktgeivieDdGkGmsee 48
                   ++e+vdN++d    +++ +++i v++++    ++++ D+G G++ +
   EGE27924.1 51 HMVFEVVDNAIDealaGHCDEINIIVHDDE----SVSVMDNGRGIPVD 94
                 5699********977677788*******86....9*********9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.40
# Mc/sec: 6122.43
//
Query:       EGE27925.1  [L=519]
Description: GMP synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-41  138.1   0.1    1.7e-40  137.0   0.1    1.6  1  GMP_synt_C     GMP synthase C terminal domain
    9.5e-41  139.7   0.0    1.7e-40  138.8   0.0    1.4  1  GATase         Glutamine amidotransferase class-I
    4.8e-13   48.8   0.1    2.9e-08   33.1   0.1    2.3  2  NAD_synthase   NAD synthase
    8.3e-10   38.8   0.0    2.9e-09   37.0   0.0    1.9  2  Peptidase_C26  Peptidase C26
    6.9e-05   21.8   0.1    0.00015   20.7   0.0    1.6  2  tRNA_Me_trans  tRNA methyl transferase
     0.0018   18.0   0.0     0.0038   16.9   0.0    1.5  2  Asn_synthase   Asparagine synthase
     0.0039   16.7   0.0       0.41   10.1   0.0    2.2  2  QueC           Queuosine biosynthesis protein QueC
  ------ inclusion threshold ------
      0.011   15.5   0.1      0.025   14.3   0.1    1.6  1  ATP_bind_3     PP-loop family
      0.038   13.6   0.1       0.07   12.7   0.1    1.3  1  ThiI           Thiamine biosynthesis protein (ThiI)
      0.045   13.3   0.0      0.083   12.5   0.0    1.5  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
       0.07   13.2   0.0       0.17   11.9   0.0    1.7  2  PAPS_reduct    Phosphoadenosine phosphosulfate reductase fami


Domain annotation for each model (and alignments):
>> GMP_synt_C  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.1     1e-43   1.7e-40       1      92 []     427     518 ..     427     518 .. 0.99

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1e-43
                 CCCCTTT-GGGSSEEEEEEEEEEE----------EEEEEEEEE---------B----HHHHHHHHHHHHHHSTT---EEEE---TTTS-S-- CS
  GMP_synt_C   1 eelkkaglykkiwQafavllpvksvGvmgdkRtyeyvvalRaveseDamtadvaelpyevLekissrivnevkgvnrvvyditskPpatiEw 92 
                 +el+++g+y+k+ Qafav+ pvksvGv gd R y++v+alRave+ D+mta++a+lpye+++kis+ri+ne+k+v+rvvyd++skPpatiEw
  EGE27925.1 427 QELRASGWYDKTAQAFAVFEPVKSVGVVGDGRRYAWVIALRAVETVDFMTARFAHLPYELIDKISTRIMNEIKEVSRVVYDVSSKPPATIEW 518
                 5899**************************************************************************************** PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8   0.0     1e-43   1.7e-40       2     187 ..      11     192 ..      10     195 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.8 bits;  conditional E-value: 1e-43
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekeh 100
                 ++D+++++++ ++++++e+gv+ e++ +d s+e i+  + np gi++sgGp s+  eg+++a k ++e ++P+LGIC+G+Q + +++g+kv+     e 
  EGE27925.1  11 ILDFGSQYSQLIARRVREAGVYSEIHAFDMSDEDIR--AFNPRGIILSGGPESVHQEGSPRAPKAVFELGVPVLGICYGFQTMSEQLGGKVEAGLVHEF 107
                 79*********************************5..89****************************************************9999999 PP

                 EEEEEEEEETTT..CGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase 101 hggtmrlgddet..allyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfl 187
                   +++ ++++++  ++++++kn+ +++++H+++v     +p+g++vt  + + + ++ +  ++++++gvQFHPE+t+t++g++l+ nf+
  EGE27925.1 108 GYAKIDITHQDKllSKINDEKNQSQVWMSHGDKVAS---LPTGFTVTSSTPN-CPYASASDEDRQLYGVQFHPEVTHTEKGEQLISNFV 192
                 99*******999***********************9...*******999965.678888888888**********************96 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1   1.8e-11   2.9e-08       9      80 ..     212     283 ..     205     302 .. 0.82
   2 !   13.2   0.0   2.2e-05     0.036     148     177 ..     367     396 ..     360     400 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.8e-11
                   HHHHHHHCTTSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--.SSSTTHHHHHHHHHHHHHHTSEEEE-- CS
  NAD_synthase   9 lkeyvkkagakgvvlGlSGGvDSslvaalavkalgkenvlalllP.ssvsseedvedalalaenlgievktid 80 
                   +++  ++ g ++v+lGlSGGvDSs+vaal  +a+g+ + + + +  +    +e  +  +++aen+gi+v   d
    EGE27925.1 212 IEQLKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGD-QLTCVFVDnGLLRLNEGDQVMQMFAENMGIRVIRAD 283
                   6666678899************************65.566666665778888888899999999999987766 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.2e-05
                   BETTTTS-HHHHHHHHHHTT--HHHHCS-- CS
  NAD_synthase 148 lapiaellKtevkeLakelnvPervlkkpP 177
                   ++p+ +l+K ev++L  +l++P++++ ++P
    EGE27925.1 367 VEPLRDLFKDEVRKLGVALGIPHHMIYRHP 396
                   57************************9998 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.5   7.4e+03      60      70 ..      51      62 ..      17      66 .. 0.62
   2 !   37.0   0.0   1.8e-12   2.9e-09     100     216 .]      73     177 ..      69     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.5
  Peptidase_C26 60 dgllltGgq.dv 70
                    g++l+Gg+  v
     EGE27925.1 51 RGIILSGGPeSV 62
                   589999998555 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 1.8e-12
  Peptidase_C26 100 aalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkve.kgsllaellg.seeievnslHhqaikelaeelrveAvaeD 193
                    a+ e gvP+lgiC G+q +  +lGG++   + +            ++   +++++ +++ll+++   +++ +v   H   +  l +++ v++ ++ 
     EGE27925.1  73 AVFELGVPVLGICYGFQTMSEQLGGKVEAGLVH------------EFGYAKIDIThQDKLLSKINDeKNQSQVWMSHGDKVASLPTGFTVTSSTPN 156
                    567889*******************99888873............2334466665378899999987999**********************9996 PP

  Peptidase_C26 194 gviEaieseeakafvlgvQwHPE 216
                          +   ++  ++gvQ+HPE
     EGE27925.1 157 CPYASASD--EDRQLYGVQFHPE 177
                    55444444..4557********9 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   9.3e-08   0.00015       1      34 [.     222     256 ..     222     293 .. 0.74
   2 ?   -3.6   0.0       2.3   3.7e+03     165     181 ..     367     383 ..     364     388 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 9.3e-08
  tRNA_Me_trans   1 kkvvvalSgGVDSsvaaallkeq.gyevigvflkl 34 
                    +kv+ +lSgGVDSsv+aall+++ g +++ vf+ +
     EGE27925.1 222 QKVLLGLSGGVDSSVVAALLHRAiGDQLTCVFVDN 256
                    589*****************997357777777766 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.3
  tRNA_Me_trans 165 lfPlgeltKeevrkiAk 181
                    + Pl +l K+evrk+  
     EGE27925.1 367 VEPLRDLFKDEVRKLGV 383
                    5699*********9865 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.9   6.3e+03      15      27 ..      46      58 ..      44      61 .. 0.84
   2 !   16.9   0.0   2.4e-06    0.0038      19      44 ..     223     248 ..     215     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.9
  Asn_synthase 15 radvpvGalLSGG 27
                  ra  p G+ LSGG
    EGE27925.1 46 RAFNPRGIILSGG 58
                  677899******9 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2.4e-06
  Asn_synthase  19 pvGalLSGGlDSSliaalaarqsksp 44 
                   +v + LSGG+DSS++aal+ r    +
    EGE27925.1 223 KVLLGLSGGVDSSVVAALLHRAIGDQ 248
                   67778**************9876555 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00025      0.41       2      53 ..     224     277 ..     223     311 .. 0.73
   2 ?    4.3   0.0     0.015        24     140     178 ..     352     390 ..     325     394 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00025
                 EEEE--SSHHHHHHHHHHHHH-.SEEEEEEEESS-T.TSHHHHHHHHHHHHT-- CS
        QueC   2 avvllSGGlDSttvlalakkeg.kevealtfdYgqr.hkkeleaakkiakelgv 53 
                 +++ lSGG+DS++v+al ++++ ++++++ +d g    ++  ++++ +a+++g+
  EGE27925.1 224 VLLGLSGGVDSSVVAALLHRAIgDQLTCVFVDNGLLrLNEGDQVMQMFAENMGI 277
                 67789**********999887438999999988865255556677777777777 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.015
                 HHHHHHHH...HTS--EEE-TTTT--HHHHHHHHHHTTHHHH CS
        QueC 140 lnkalnlg...edkkieieaPlidlsKaeivklgkelgvple 178
                  +++   g    d  +e++ Pl dl K e+ klg  lg+p +
  EGE27925.1 352 HHNV---GglpDDLAFELVEPLRDLFKDEVRKLGVALGIPHH 390
                 3333...244478899**********************9876 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.6e-05     0.025       1      66 [.     223     284 ..     223     354 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
                 EEEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE- CS
  ATP_bind_3   1 kvlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkelckklnikleiekv 66 
                 kvl+++SgG+DS +   ll++       +l+++ vd gl    +   ++++ ++++++i+++ ++ 
  EGE27925.1 223 KVLLGLSGGVDSSVVAALLHRAIG---DQLTCVFVDNGLLRLNE-GDQVMQMFAENMGIRVIRADS 284
                 589****************99944...59999****99976544.456788899999888876655 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   4.3e-05      0.07       4      55 ..     222     274 ..     220     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.3e-05
        ThiI   4 gkvlaLlSgGiDSpVaaylllkR.Gcrvvlvhlknepgtseeaiekveklael 55 
                  kvl+ lSgG+DS V a ll +  G +  +v+++n +   +e  +++++ ae 
  EGE27925.1 222 QKVLLGLSGGVDSSVVAALLHRAiGDQLTCVFVDNGLLRLNEGDQVMQMFAEN 274
                 689999*******9877665543499*********999999999999998876 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.1e-05     0.083      66     129 ..      69     127 ..      30     200 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.1e-05
    GATase_3  66 eaikeaaeaggpvlgiCGGlqmLGeeiedpegvegeageveglglLdietefekekltgqvege 129
                 +a k+  e g+pvlgiC G+q ++e++  +     eag v   g+ +i+++ ++ kl+++++ e
  EGE27925.1  69 RAPKAVFELGVPVLGICYGFQTMSEQLGGKV----EAGLVHEFGYAKIDITHQD-KLLSKINDE 127
                 445667788*****************97654....3477888888888888888.888777666 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       7.5   1.2e+04      51      79 ..     107     135 ..     103     141 .. 0.73
   2 ?   11.9   0.0    0.0001      0.17       4      69 ..     226     293 ..     223     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7.5
                  TT-EEEEEE-SCHHHHHHHHHH-S-THHH CS
  PAPS_reduct  51 yglrlkvyepeeevaekinaekhgsslye 79 
                  +g  +++ + +++   kin ek  s+++ 
   EGE27925.1 107 FGYAKIDITHQDKLLSKINDEKNQSQVWM 135
                  55667777888888888888888888775 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.0001
                  EE--SSCTCHHHHHHHHHHCTT.HEEEEEE-STB.-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHH CS
  PAPS_reduct   4 vsvsgGkdslVllhLalkafkp.vpvvfvdtghe.fpetiefvdeleeryglrlkvyepeeevaekin 69 
                  +  sgG ds+V+  L+ +a  +  + vfvd g    +e  + ++ ++e++g+r++ +++e ++ ++++
   EGE27925.1 226 LGLSGGVDSSVVAALLHRAIGDqLTCVFVDNGLLrLNEGDQVMQMFAENMGIRVIRADSEARFLNALA 293
                  568************9999999459******9752688899999999999999888887777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3995.22
//
Query:       EGE27926.1  [L=405]
Description: glycerophosphoryl diester phosphodiesterase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-56  191.3   0.3    3.9e-56  191.1   0.3    1.1  1  Phytase-like  Esterase-like activity of phytase


Domain annotation for each model (and alignments):
>> Phytase-like  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1   0.3   2.2e-60   3.9e-56       1     286 []      64     379 ..      64     379 .. 0.93

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 2.2e-60
  Phytase-like   1 tpvgglSglaydpkdgrfyalsDrgs..k.nsarfytlkldl......dadklgkveitevtplkdpd..................gapfpkkglDp 70 
                   +pv+g+Sg   +  d ++ +l D+g+  k nsa+f+++ ++l      ++++ g+v++ + ++l+dp+                  ga+f     Dp
    EGE27926.1  64 QPVQGFSGALKN-HDSSYTVLADNGYgtKdNSADFLLRIYHLdvdfrsKEGGGGEVKVLDFIQLRDPNklipfeivnensadrlltGADF-----DP 154
                   79*******999.*************9768999888877777777787777******************************888888888.....** PP

  Phytase-like  71 EgiavapdgtfwvssEggpfilefdadGkl.lrelplpaellpaaspd.............aglrrnrGfEglalspdgrkLyaalEspldqdgaka 153
                   E+i+ ++dg++w+++E+gpf+l+f+++G l  ++++lp   + +++ +             + ++r++GfEg+als dg++Ly++lE+pl++ g+k+
    EGE27926.1 155 ESIQQTSDGSYWIGEEFGPFLLHFNKEGVLiDAPIALPHPNQKNQQLRspqnplntnysspTTVQRSGGFEGMALSSDGKFLYPMLEKPLTDTGTKQ 251
                   ******************************8999****99855555449**********************************************99 PP

  Phytase-like 154 keagsrlrilefdlat.gktvgefaypleavaeaggngisdllalddgrllvlERdfseg.tgntkrlykidlagatdvsgveslagadgvkpvdke 248
                         l i efd+++ ++t++++ + l++    ++ +i+d+ ++d+++ +v+ERd++e   +  k+l +i+l++    ++v++++ +d++++ +++
    EGE27926.1 252 ------LLISEFDVQKkAYTGNHYWFVLDE----RATAIGDFQMIDNRSGIVIERDDTENdWNGYKKLIRITLGRS--GQAVDRTDLVDLMNIDNPD 336
                   ......**********99***********9....**********************9999778899********99..9999999999999999999 PP

  Phytase-like 249 llldlakl.........glpldniEGlavgprldgrrtlllvsDnNf 286
                    l    ++          +p+ +iE++ +    +++rt+++ +DnNf
    EGE27926.1 337 HLYGPVRAgdmgvgqrfTFPFFTIEDIII----EDDRTITVFNDNNF 379
                   99766666888999887888*********....9************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3331.87
//
Query:       EGE27927.1  [L=164]
Description: rare lipoprotein A family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-14   54.4   0.2    1.8e-14   53.8   0.2    1.3  1  DPBB_1    Lytic transglycolase
  ------ inclusion threshold ------
      0.016   15.0   0.1      0.023   14.5   0.1    1.3  1  Barwin    Barwin family
        0.3   11.7   3.0       0.55   10.8   3.0    1.5  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.2     3e-18   1.8e-14       4      81 ..      19     105 ..      16     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 3e-18
                 EEEEE-.CCC....-TTSSB--TTS-EEE-SSS-TT-EEEE..TT.--EEEEEEEE----.STTECEEE-HHHHHHHT-TTTS-EEE CS
      DPBB_1   4 gsasly.kdg....tacGecyevkcltaahktlplgtycrv..ls.gksvtVtitDrgpf.ppgrhiDLSkaAfeklakpraGvipV 81 
                    ++y +++    ta+Ge+++ +++t a+++  +gt  +v   + +ksv+ +++Drg f   g  +DLSk Af+k+a  ++G ++V
  EGE27927.1  19 ATVTYYgDKFhgkkTASGERFNQNAMTCASNSHKFGTHLKVtnTAnDKSVICRVNDRGGFgKYGVTLDLSKGAFAKIAPLSQGRARV 105
                 56678864447788***************************975579*************9999*******************9998 PP

>> Barwin  Barwin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   3.9e-06     0.023      54      99 ..      47      96 ..       7     111 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.9e-06
      Barwin 54 argqascGkclrvtntatnaqvtvrivdqcsng....Gldldvalfnkld 99
                a +    G  l+vtnta++++v+ r+ d    g     ldl +  f k+ 
  EGE27927.1 47 ASNSHKFGTHLKVTNTANDKSVICRVNDRGGFGkygvTLDLSKGAFAKIA 96
                3334457999******************9766666345566677888775 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.0   9.1e-05      0.55       1      16 [.       1      16 [.       1      16 [. 0.96

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.1e-05
      LPAM_1  1 MKKillalgalllLsG 16
                MKKi++a++al +Ls+
  EGE27927.1  1 MKKIFVAALALSALSA 16
                ***********99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       914  (0.0509789); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1353.95
//
Query:       EGE27928.1  [L=119]
Description: peptidylprolyl isomerase, FKBP-type [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-26   90.2   0.0    1.1e-25   89.8   0.0    1.1  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   6.1e-30   1.1e-25       2      94 .]      13     112 ..      12     112 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 6.1e-30
                 SCBB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTT..........SBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEE CS
      FKBP_C   2 keeakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealeg..........mkvGekrtltippelaYgekglaggvippnatLvFe 90 
                 k+ a +g+ +  +y+g+l dg+vfd s++r++p+e+++G g+vikG++ ++ g          m+vG++r+l++p +laYg++ +  g+ippn+ L Fe
  EGE27928.1  13 KT-AVKGALIITEYTGYLMDGTVFDASVHRGRPFECVIGTGRVIKGWDLGVLGfddsgvgvvpMQVGGRRELIVPAHLAYGDRAV--GKIPPNSPLRFE 108
                 44.999*******************************************************************************..47********** PP

                 EEEE CS
      FKBP_C  91 veLl 94 
                 +eLl
  EGE27928.1 109 IELL 112
                 **97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 914.99
//
Query:       EGE27929.1  [L=391]
Description: ornithine decarboxylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-54  184.1   0.0    3.4e-54  183.8   0.0    1.1  1  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
      8e-13   48.4   0.0    8.8e-13   48.3   0.0    1.2  1  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina
  ------ inclusion threshold ------
      0.026   14.3   0.1      0.055   13.2   0.0    1.5  2  DUF1955          Domain of unknown function (DUF1955)
        0.2   12.3   0.0        6.3    7.5   0.0    2.5  2  Ank_4            Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.0   7.5e-58   3.4e-54       2     246 ..      33     270 ..      32     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 7.5e-58
                    HHHHHHHHHHHHHCTCCEEEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHTEEEESSHHHHHH CS
  Orn_Arg_deC_N   2 asierklkrwkkalprikvfYavKansdlavlellaelGlgldcaSkaElelvlaagvsperiifanpckqreelryalekgvkvvtvdnveelek 97 
                    ++i+ k++++ + +p++k++Ya+Ka + ++v++ la+lG ++dcaS  El++vl  gv ++ri + n  k++ +++ya +kg++    d+   l +
     EGE27929.1  33 SRIKTKYEEMVTLFPKAKIHYAMKASPATEVVKYLADLGSNFDCASIYELDRVLDCGVTADRISYGNTIKKAVHIKYAYNKGIDLYATDSKADLIN 128
                    7899******************************************************************************************** PP

                    HHHHHCCEEEEEEEE-.SCCSSSSTCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHH.HHT-- CS
  Orn_Arg_deC_N  98 laklapeakvllRikt.dvsaatcelistggessKFGaaleeavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdela.elGvk 191
                    +a++ap++kv++Ri + ++++a+ +l      s KFG++ + a+  ll +ak+++l   G+sfHvGS+ +d++a+++a+ k++ +fd ++ e G+k
     EGE27929.1 129 IANNAPGSKVFVRILVhGADTAEWPL------SRKFGCHPDMAI-DLLVQAKNLGLVPYGISFHVGSQQKDVAAWDDALAKVKYMFDWMKyEEGIK 217
                    **************872566666666......********5555.55566777888888************************************* PP

                    -SEEE--S-BS-HCSTTSSSSTHHHHHHHHHHHHHHHHHTSSS-EEEE--SHHHH CS
  Orn_Arg_deC_N 192 lkiLdvGGGfgveyeeeeeplkleeiaekirealeeafpgdkevtiiaEpGRalv 246
                    l+++++GGGf ++y +  e  +++ +ae+i   l e f +d+ ++ii+EpGR++v
     EGE27929.1 218 LQMINLGGGFPTNYIS--EVNPISVYAEEIHRYLSEDFDEDEMPEIILEPGRSMV 270
                    ***************6..5555669****************************98 PP

>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0     2e-16   8.8e-13       5      98 .]     137     368 ..      27     368 .. 0.71

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 2e-16
                      E............................................................................................. CS
                      x............................................................................................. RF
  Orn_DAP_Arg_deC   5 d............................................................................................. 5  
                      +                                                                                             
       EGE27929.1 137 Kvfvrilvhgadtaewplsrkfgchpdmaidllvqaknlglvpygisfhvgsqqkdvaawddalakvkymfdwmkyeegiklqminlgggfptn 230
                      0555555555555555555555555555555555556666666666666666666666666666666666666677777777777777777777 PP

                      .........................................GGEEEEEEEEEEEEETC...EEEEEES--TTTS-HHHHCTT-S-EESBTT-SC CS
                      .........................................xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC   6 .........................................eagvLvtrViavkesek...kkfvivdaGmndllrpalygsfheipvkeeeae 55 
                                                               ++gvLv++V+ + ++++   +++v++d G+ + l  +l ++++   v +++  
       EGE27929.1 231 yisevnpisvyaeeihrylsedfdedempeiilepgrsmvgDSGVLVSEVVLISRKSRtdlTRWVYTDVGLFQGLIETLGEAIKYP-VYTPKM- 322
                      777777777777777777777777777777777788888889********9999877447889********886666664554333.443444. PP

                      EEC.EEEEEEEE-SSSSTT-EEEEEE..EEEE.--TT-EEEESS-S CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC  56 keeeeeeevdvvGptCesgDvlakdr..elpe.levGdllafedaG 98 
                      ++++e+ +v ++GptC+s+D++++d   +lp+ le+Gd l++ ++G
       EGE27929.1 323 ETATEKGTVILAGPTCDSTDIMYEDAayKLPQnLEIGDKLYWLTTG 368
                      44557789*****************666*************99887 PP

>> DUF1955  Domain of unknown function (DUF1955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.2e-05     0.055      50      86 ..      60      96 ..      51     137 .. 0.84
   2 ?   -3.9   0.0       2.2     1e+04      89     100 ..     162     173 ..     159     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
                HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--- CS
     DUF1955 50 cdylvevldsiGkifdlskcqnlkrviecyvklnkls 86
                   +v+ l ++G++fd  +  +l rv++c+v++++ s
  EGE27929.1 60 ATEVVKYLADLGSNFDCASIYELDRVLDCGVTADRIS 96
                56799**************************998765 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.2
                 HHHHHHHHHHTT CS
     DUF1955  89 vdlaldvlvkkg 100
                  d+a+d lv+++
  EGE27929.1 162 PDMAIDLLVQAK 173
                 599****99875 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0014       6.3       5      30 ..      51      77 ..      49      97 .. 0.73
   2 ?    1.9   0.0     0.081   3.6e+02      17      32 ..     107     122 ..     102     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0014
       Ank_4  5 Lhyaai.sgrlelvrlLlekgadinaq 30
                +hya++ s  +e+v++L + g + ++ 
  EGE27929.1 51 IHYAMKaSPATEVVKYLADLGSNFDCA 77
                8*****************999885543 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.081
       Ank_4  17 vrlLlekgadinaqdn 32 
                 +++ ++kg+d++a+d+
  EGE27929.1 107 IKYAYNKGIDLYATDS 122
                 5788899******954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2872.70
//
Query:       EGE27930.1  [L=118]
Description: endoribonuclease L-PSP family protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-24   85.2   0.1    3.7e-24   85.0   0.1    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.1   2.1e-28   3.7e-24       6     120 ..       8     115 ..       3     116 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 2.1e-28
                    TTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEE CS
  Ribonuc_L-PSP   6 aaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsa 101
                    ++    s++  +g +vy++Gq+p d+      + d+  q rq+++n++++La ag+++++ + ++vF++++edf+ +n++++e+++   ++P+r++
     EGE27930.1   8 DSNDTLSEVAVHGSVVYLAGQVPDDD------SLDIVGQSRQVFANIDKALALAGTDKNHLLSAQVFIKNLEDFEGFNNAWKEWMAGS-TPPVRAT 96 
                    556677886677***********886......77******************************************************.7****** PP

                    EE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP 102 veVaaLpkgakvEIeaiav 120
                    ++++ ++++++vEI ++a+
     EGE27930.1  97 IQANLVNPNWLVEIMVTAA 115
                    ****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 958.44
//
Query:       EGE27931.1  [L=418]
Description: D-amino acid dehydrogenase small subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-71  239.6   0.0    8.5e-71  239.4   0.0    1.0  1  DAO              FAD dependent oxidoreductase
    5.9e-12   45.4   0.6    6.9e-05   22.2   0.5    2.2  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    4.6e-11   43.1   0.6      4e-06   27.3   0.3    2.4  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    1.6e-07   30.4   1.1     0.0017   17.2   0.0    2.5  3  HI0933_like      HI0933-like protein
    2.8e-07   30.0   0.9    6.7e-06   25.4   0.9    2.1  1  FAD_binding_2    FAD binding domain
    1.6e-06   27.6   1.1    0.00011   21.5   0.4    2.3  2  FAD_binding_3    FAD binding domain
    1.9e-06   28.0   0.2    7.4e-06   26.1   0.2    2.0  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    4.6e-05   22.8   0.1      0.067   12.4   0.0    2.2  2  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    8.8e-05   21.9   0.9    0.00041   19.7   0.3    2.1  2  Thi4             Thi4 family
     0.0001   21.5   0.7      0.029   13.5   0.3    2.2  2  GIDA             Glucose inhibited division protein A
    0.00012   21.6   0.0     0.0094   15.3   0.0    2.1  2  Amino_oxidase    Flavin containing amine oxidoreductase
    0.00017   21.3   0.1    0.00031   20.4   0.1    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
    0.00058   19.8   0.7     0.0012   18.8   0.7    1.5  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    0.00086   18.7   0.1     0.0014   17.9   0.1    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
      0.001   18.0   0.6      0.085   11.7   0.5    2.2  2  Trp_halogenase   Tryptophan halogenase
     0.0039   16.8   0.2      0.009   15.6   0.2    1.6  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
     0.0056   17.1   0.0       0.01   16.3   0.0    1.5  1  NAD_binding_7    Putative NAD(P)-binding
     0.0066   16.7   0.4      0.014   15.6   0.4    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0067   16.7   0.1       0.02   15.1   0.1    1.8  1  TrkA_N           TrkA-N domain
     0.0072   15.7   1.6       0.26   10.6   0.8    2.3  2  FAD_oxidored     FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.011   15.7   0.2      0.022   14.8   0.2    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.014   15.3   0.2      0.042   13.8   0.2    1.8  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
      0.026   14.5   0.3        3.7    7.5   0.0    2.5  2  NAD_binding_9    FAD-NAD(P)-binding
      0.032   14.2   0.2      0.066   13.2   0.2    1.5  1  TP6A_N           Type IIB DNA topoisomerase
      0.063   13.8   0.0       0.61   10.6   0.0    2.4  2  XdhC_C           XdhC Rossmann domain
       0.08   11.5   0.0       0.14   10.6   0.0    1.4  1  Mqo              Malate:quinone oxidoreductase (Mqo)
       0.14   11.6   0.5       0.26   10.7   0.5    1.4  1  adh_short        short chain dehydrogenase


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.4   0.0   1.3e-73   8.5e-71       1     351 [.       2     396 ..       2     397 .. 0.92

  Alignments for each domain:
  == domain 1  score: 239.4 bits;  conditional E-value: 1.3e-73
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH.......................................... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas.......................................... 55 
                 +v++ GGG+iG +tAy+La++g  Vt++e+++ +++++S +n+g++++g++ +p+a                                           
  EGE27931.1   2 KVLVLGGGVIGTTTAYYLAKKGvqVTVIERQHAVAQETSFGNAGQISPGYS-TPWAApqiptkaikwlfqkhaplairpdgssfqmswltqmlkncthk 99 
                 599**********************************************98.99988899*************************************** PP

                 .......HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTST....TTSEEEEETTEEEE CS
         DAO  56 .......elarlslealeelreleeelgididyrrtGllslaadeeelealdkllallleagldaelldaeevrelepalp....gllgalfypdtgqv 143
                        ++ r+++++++++r+l  ++gid ++r +G+l+l++++++l+++ k ++ l+e g+d+elld++ + + epal+    +l+g+l  p++ + 
  EGE27931.1 100 rytinksRMMRVAEYSRDCFRQLRLDTGIDYEHRTQGTLQLFRTQAQLDQVGKDIEVLKECGVDYELLDKNSLSQAEPALAhaaaQLTGGLRLPHDETG 198
                 *******999************************************************99**********99******94446789************* PP

                 EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSE CS
         DAO 144 dpakltaalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaail 241
                 d+  +t+ala+ +++ Gve++++t++ ++ +++  ++gv   ++ge  +ad  V+a G +s+  ++ l  ldlp++pv+g++l++ p+ +     +  +
  EGE27931.1 199 DCNLFTKALAEICKDMGVEFRFNTTIDKITHNNQTITGV--IADGELITADSYVLALGSYSRaMAKSL-GLDLPVYPVKGYSLTV-PIID-----ESRA 288
                 *****************************8888999999..55566645699********99444334.3477************.8877.....2445 PP

                 EEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCGEE..EEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTT CS
         DAO 242 pvpetdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPqlgdvl..rkwaGlrp.lpdglpligetpgvkglylatGhsgh 337
                 p+  t+ d+++ +++ r ++r++vGg a e sg+d     +++++ l    + lf + gd++    w+Glrp +pdg p+ig+t   k+lyl+tGh+  
  EGE27931.1 289 PIS-TVIDETYKIAITRFNQRIRVGGMA-ELSGFDL-NLRQKRRETLEMVTKSLFDG-GDLKnaTFWTGLRPmTPDGTPIIGQTD-LKNLYLNTGHGTL 382
                 677.889999999***************.*******.******************88.6655325*******55*********86.99*********** PP

                 HHHHHHHHHHHHHH CS
         DAO 338 GltlapatGkllae 351
                 G+t+++++G l+++
  EGE27931.1 383 GWTMSCGSGSLISD 396
                 ***********988 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.5     1e-07   6.9e-05     144     178 ..       2      36 ..       1      45 [. 0.87
   2 !   21.0   0.0   2.5e-07   0.00017     185     240 ..     203     258 ..     200     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1e-07
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  +++v GgG+iG+ +A +lak g++vt++e+   + 
   EGE27931.1   2 KVLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAVA 36 
                  6899*************************988776 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 2.5e-07
                  HHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 185 lsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrps 240
                  +++al+e  +++Gve++++t++ +i+ n++ ++ v  dge i ad  v+a G   +
   EGE27931.1 203 FTKALAEICKDMGVEFRFNTTIDKITHNNQTITGVIADGELITADSYVLALGSYSR 258
                  57889999**********************9999*****************97555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.3     6e-09     4e-06       1      34 [.       2      35 ..       2      43 .. 0.92
   2 !   13.6   0.0   0.00011     0.074      43      78 ..     204     239 ..     199     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 6e-09
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkl 34
                kv+v+GgG+ig   A +la+ g +Vtv+er+  +
  EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAV 35
                79****************************9876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  43 skilqeklekngievllntkveeiegsedgvesvkl 78 
                  k+l+e  +++g+e+++nt++ +i+++++++++v  
  EGE27931.1 204 TKALAEICKDMGVEFRFNTTIDKITHNNQTITGVIA 239
                 67899999******************9998888865 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.3   0.00015     0.099       2      36 ..       2      36 ..       1      46 [. 0.92
   2 ?   -2.8   0.0       2.9   1.9e+03      67     102 ..     105     141 ..      91     152 .. 0.71
   3 !   17.2   0.0   2.5e-06    0.0017     113     168 ..     205     259 ..     197     279 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +v+v+GgG  G  +A  +ak+g +V+++e++++++
   EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAVA 36
                 79****************************99876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.9
                  TTTTHHHHHHS-HHHHHHHHHHTT--EEE-STT..EEE CS
  HI0933_like  67 pkflksalsrftnedlialveelgvelkeedsg..rlF 102
                  +  +    ++++ + +++l  + g++++ +++g  +lF
   EGE27931.1 105 KSRMM-RVAEYSRDCFRQLRLDTGIDYEHRTQGtlQLF 141
                  44433.35789999999999999999999999833445 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 2.5e-06
                  HHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-G CS
  HI0933_like 113 dallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiP 168
                  +al + +k+ gv++r +t++ +++++++ +  v + ++e ++ad+ vlA+G+ S +
   EGE27931.1 205 KALAEICKDMGVEFRFNTTIDKITHNNQTITGVIA-DGELITADSYVLALGSYSRA 259
                  689999********************999999999.9**************99865 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.9     1e-08   6.7e-06       2     208 ..       3     262 ..       2     282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1e-08
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S.-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldela.dqplveafveaapeavdeL 96 
                    v+V G+G+ G + A+ +a++G +v+v+e  +++  +t +  +g   ++           +p ++++   ka  +l  +++   +  + +   +++L
     EGE27931.1   3 VLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAVAQETSFGNAGQISPG---------YSTPWAAPQIPTKAIKWLFqKHAPLAIRPDGSSFQMSWL 89 
                    9*******************************8888877777777777.........367999999999999999988888888899999999999 PP

                    HHT..T----B...CCTSSB-EEE-TT-SST................................................................. CS
  FAD_binding_2  97 eel..gvpfsr...tedgpvdvrelGglsat................................................................. 122
                    +++   +  +r   +   + ++ ++ + s++                                                                 
     EGE27931.1  90 TQMlkNCTHKRytiN---KSRMMRVAEYSRDcfrqlrldtgidyehrtqgtlqlfrtqaqldqvgkdievlkecgvdyelldknslsqaepalaha 182
                    999875555553330...444444444444455555555666666666666666677777777888888899999999999999999999999997 PP

                    ..EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG.... CS
  FAD_binding_2 123 ..artlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgrallk 208
                      ++t+   ++ + ++ ++ +   ++l+e ++++gv+f+++t +d+++++++ +tG+++     g+   i+a+  vla g ++ra++k
     EGE27931.1 183 aaQLTG--GLRLPHDETGDCNLFTKALAEICKDMGVEFRFNTTIDKITHNNQTITGVIAD----GE--LITADSYVLALGSYSRAMAK 262
                    652222..233323778899************************************9998....44..46799999999999985544 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.4   1.7e-07   0.00011       3      38 ..       2      37 ..       1      47 [. 0.90
   2 ?    4.4   0.0     0.029        19      51     145 ..     155     241 ..     102     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.7e-07
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCC CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvv 38
                   +Vl+ G+G  G ++a  L+++Gv+v+++e++   ++
     EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAVAQ 37
                   7*****************************986655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.029
                    HHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEEC CS
  FAD_binding_3  51 ellrqlGledrilaegapnelmgealynelsdtpkaradlelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdk 145
                    e+l++ G++ ++l++ + ++    +  +         a+l+   + ++ ++   + ++++L+e  +  g+++rf+t +  ++++++++t ++ d 
     EGE27931.1 155 EVLKECGVDYELLDKNSLSQAEPALAHA--------AAQLTGGLRLPHDETGDCNLFTKALAEICKDMGVEFRFNTTIDKITHNNQTITGVIADG 241
                    5555555555555555333332222222........24444233444444445578899****************************99999876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.2   1.1e-08   7.4e-06       1      30 [.       5      34 ..       5      52 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.1e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdr 30
                   ++G+G+ G ++Ay+Lak+g++v+++e+++ 
     EGE27931.1  5 VLGGGVIGTTTAYYLAKKGVQVTVIERQHA 34
                   89*************************986 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0    0.0001     0.067       2      35 ..       5      37 ..       1      73 [. 0.66
   2 !    8.2   0.0     0.002       1.3      87     137 ..     207     258 ..     201     266 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgnigns 35
                 + G+G +G ++a+ l k+g+ +++++E++++++ 
   EGE27931.1  5 VLGGGVIGTTTAYYLAKKGV-QVTVIERQHAVAQ 37
                 55666666666666666666.4666666655544 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.002
  Pyr_redox_3  87 lrevaksfelpiklfeeVesvkked.egfevetsketyeAkkviiAtGefdk 137
                  l+e++k   ++ + ++++ ++++++ +   v ++ e ++A++ ++A G +++
   EGE27931.1 207 LAEICKDMGVEFRFNTTIDKITHNNqTITGVIADGELITADSYVLALGSYSR 258
                  3455555556666666666666643033556666666666666666666654 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.3   6.2e-07   0.00041      19      53 ..       2      35 ..       1      47 [. 0.88
   2 ?   -0.1   0.0      0.68   4.5e+02     105     144 ..     208     246 ..     198     252 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.2e-07
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS- CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvsp 53
                 v++ G+G  G t+ayylakk +++v+++er+ ++
  EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKK-GVQVTVIERQHAV 35
                699******************.*********9776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.68
                 HHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEEHHHHT CS
        Thi4 105 skvlqlanvkllnavaveDlivregegvaGvvinwtlvel 144
                 +++++  +v     +++ D i++++++++Gv+ +  l++ 
  EGE27931.1 208 AEICKDMGVEFRFNTTI-DKITHNNQTITGVIADGELITA 246
                 55555566665444555.6677778*******99888875 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   4.3e-05     0.029       1      31 [.       2      32 ..       2      49 .. 0.81
   2 !    6.2   0.0    0.0068       4.5     115     155 ..     221     260 ..     198     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.3e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithk 31
                +v V+GgG  G+  A+ +a++G++v+ i  +
  EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKKGVQVTVIERQ 32
                699***********************99333 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0068
                 ES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-E CS
        GIDA 115 eeeveeliveekkvkgvvtedgetikakavviatGtflkgk 155
                 + +++++  ++++++gv+ +dge i+a++ v+a G+++++ 
  EGE27931.1 221 NTTIDKITHNNQTITGVI-ADGELITADSYVLALGSYSRAM 260
                 567889988889999987.6899*************99875 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.027        18       5      24 ..      14      33 ..      12      35 .. 0.89
   2 !   15.3   0.0   1.4e-05    0.0094     211     264 ..     202     257 ..     101     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.027
                   HHHHHHHHTTEEEEEEESSS CS
  Amino_oxidase  5 aaArqLlsaGfdVtvlEard 24
                   ++A++L+ +G++Vtv+E + 
     EGE27931.1 14 TTAYYLAKKGVQVTVIERQH 33
                   79***************976 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.4e-05
                    HHHHHHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHH CS
  Amino_oxidase 211 qlpealae..elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgv 264
                       +alae  +  g+++r+nt   +i++++ ++t  + dge ++aD++v+++  + 
     EGE27931.1 202 LFTKALAEicKDMGVEFRFNTTIDKITHNNQTITGVIADGELITADSYVLALGSYS 257
                    56678999999****************************************98765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   4.7e-07   0.00031       1      35 [.       3      37 ..       3      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.7e-07
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlea 35
                +++lG G iG++ a++Lak+g +vt+i r+  +++
  EGE27931.1  3 VLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAVAQ 37
                68***************************985554 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.7   1.8e-06    0.0012       1      37 [.       2      38 ..       2      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.8e-06
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealek 37
                kv v+G G++G+  a+ +a++g++V++++++++ +++
  EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAVAQE 38
                689***************************9988776 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.2e-06    0.0014      30      68 ..       2      40 ..       1      66 [. 0.90

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.2e-06
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqle 68
                 kvlv+GgGv G+  +   ++ g +Vtv++ ++a++++ +
   EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAVAQETS 40
                 8*******************************9998865 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.5   0.00013     0.085       1      34 [.       2      32 ..       2      39 .. 0.93
   2 ?    4.2   0.0     0.025        16     152     218 ..     199     264 ..     191     269 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvese 34
                    k++++GGG  G ++A +lak +   ++vt++e +
      EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKKG---VQVTVIERQ 32
                    799******************9...9*****986 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.025
                     -HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-IIIIIIT CS
  Trp_halogenase 152 daalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrgllieqaL 218
                     d +l+ k L ++ ++ Gv+ +  +  +  ++++  ++++   dg+ + ad ++ + G  ++ +++ L
      EGE27931.1 199 DCNLFTKALAEICKDMGVEFRFNTTIDKITHNNQTITGVIA-DGELITADSYVLALGSYSRAMAKSL 264
                     66899****************999999999********987.9**********99999999888876 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   1.4e-05     0.009       1      32 [.       1      32 [.       1      49 [. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
                    SEEEEE--STTHHHHHHHHHHCTSEEEEE-S- CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigvDid 32
                    mk+ v+G G +G +ta  la++g++v+++  +
      EGE27931.1  1 MKVLVLGGGVIGTTTAYYLAKKGVQVTVIERQ 32
                    89**************************9865 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.5e-05      0.01       9      40 ..       2      33 ..       1     107 [. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-05
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapev 40
                   kvlv GgG ++++ ++ l+++g +vtv+  + 
     EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKKGVQVTVIERQH 33
                   79*************************98874 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.4   2.2e-05     0.014       1      40 [.       3      39 ..       3      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.2e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskekleal 40
                     vl++G+G +G  +a +la+++ v  ++tv++r+++ ++++
       EGE27931.1  3 VLVLGGGVIGTTTAYYLAKKG-V--QVTVIERQHAVAQET 39
                     89*****************98.6..9*******9998775 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   3.1e-05      0.02       1      36 [.       3      38 ..       3      44 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.1e-05
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeervee 36
                ++++G G +G++ a +L ++g +v+vi++++++++e
  EGE27931.1  3 VLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAVAQE 38
                68*****************7768*******999987 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.8   0.00039      0.26       2      32 ..       3      33 ..       2      36 .. 0.95
   2 ?    3.4   0.0     0.059        39      83     136 ..     197     246 ..     165     252 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00039
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  v+V GGg+ G++ A+  a++G +v ++e++ 
    EGE27931.1  3 VLVLGGGVIGTTTAYYLAKKGVQVTVIERQH 33
                  99**************************986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.059
  FAD_oxidored  83 tfepevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirA 136
                   t + + ++++l e++++ gv+  +nt++++++ ++++i++v++     ++ i+A
    EGE27931.1 197 TGDCNLFTKALAEICKDMGVEFRFNTTIDKITHNNQTITGVIAD----GELITA 246
                   567788999999999*******************999****984....455555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   3.3e-05     0.022      14      51 ..       2      38 ..       1      44 [. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.3e-05
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHH CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRtlerake 51
                  kvl++G G +++ +a +L++kgv+ v+v+ R+++ a+e
    EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKKGVQ-VTVIERQHAVAQE 38
                  89*********************9.******9998876 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   6.3e-05     0.042       1      37 [.       2      38 ..       2      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.3e-05
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHH CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreeeliee 37
                    k+ vlG+G  Gt+ A  la++g +v+++ r++++++e
      EGE27931.1  2 KVLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAVAQE 38
                    789***************************9988776 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.041        27       2      38 ..       5      36 ..       4     152 .. 0.86
   2 ?    7.5   0.0    0.0055       3.7     103     154 ..     202     254 ..     200     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.041
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepga 38
                   + G+G+ G++++  L+++      +++t+++++++ a
     EGE27931.1  5 VLGGGVIGTTTAYYLAKK-----GVQVTVIERQHAVA 36
                   67**************99.....59******976654 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0055
  NAD_binding_9 103 lfeellarlpegvtvevh.raevvdleeradgqavlladgaslaadaVvLAlG 154
                    lf+++la+  +++ ve+  ++++ +++ ++++ + + adg+ ++ad+ vLAlG
     EGE27931.1 202 LFTKALAEICKDMGVEFRfNTTIDKITHNNQTITGVIADGELITADSYVLALG 254
                    577888888778888886488888999999999999****************9 PP

>> TP6A_N  Type IIB DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2    0.0001     0.066      26      55 ..     116     160 ..      84     166 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
                 HHHHHH...............GGGS-SSHHHHHHHHHHHHHHHTS CS
      TP6A_N  26 RdiYYr...............dvelFksQaesdrliddievllgv 55 
                 Rd++ +                 +lF++Qa+ d++ +dievl ++
  EGE27931.1 116 RDCFRQlrldtgidyehrtqgTLQLFRTQAQLDQVGKDIEVLKEC 160
                 55555566666666666666678*****************99777 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00092      0.61       1      45 [.       3      53 ..       3     101 .. 0.81
   2 ?    0.3   0.0       1.4   9.1e+02      16      66 ..     156     208 ..     152     265 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00092
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE......- CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeade......t 45
                ++++G+g ++   a ++a+ g++vtv++ + ++a++++f +a +      t
  EGE27931.1  3 VLVLGGGVIGTTTAYYLAKKGVQVTVIERQHAVAQETSFGNAGQispgysT 53
                589****************************99999999877655555550 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.4
                 HHHHHTEEEEEEES-G.GGG-GGG-TT-SE.-EEEE--S-HHHHHHHHHHHSS CS
      XdhC_C  16 laaalgfrvtvvdpre.efatkerfpeade.tavvvlthdhklDaealeaalr 66 
                 +++++g++  ++d+++ + a+++ + +a++ t  + l hd + D ++  +al+
  EGE27931.1 156 VLKECGVDYELLDKNSlSQAEPALAHAAAQlTGGLRLPHDETGDCNLFTKALA 208
                 56666777777777774444444444333365555555555555555555552 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00022      0.14       4      51 ..       2      45 ..       1      52 [. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
         Mqo  4 dvvliGaGimsatlgvllkelepelsievlerldkvaeessnawnnaG 51
                 v+++G+G++ +t + +l +    ++++v+er ++va+e s    naG
  EGE27931.1  2 KVLVLGGGVIGTTTAYYLAK--KGVQVTVIERQHAVAQETSF--GNAG 45
                68999************985..7899*************984..4665 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   0.00039      0.26       3      39 ..       3      38 ..       1      46 [. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseeklee 39
                vlv G++  IG  +a+ lak+G++v+v++r+ + ++e
  EGE27931.1  3 VLVLGGG-VIGTTTAYYLAKKGVQVTVIERQHAVAQE 38
                7888887.7*********************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.64u 0.31s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 2694.88
//
Query:       EGE27932.1  [L=623]
Description: thiamine biosynthesis protein ThiC [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-205  682.1   0.0     3e-205  681.8   0.0    1.0  1  ThiC_Rad_SAM     Radical SAM ThiC family
    3.4e-34  116.5   0.0      1e-32  111.8   0.0    2.6  2  ThiC-associated  ThiC-associated domain


Domain annotation for each model (and alignments):
>> ThiC_Rad_SAM  Radical SAM ThiC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  681.8   0.0  3.3e-209    3e-205       1     417 [.     146     590 ..     146     591 .. 0.99

  Alignments for each domain:
  == domain 1  score: 681.8 bits;  conditional E-value: 3.3e-209
  ThiC_Rad_SAM   1 tqleaarkgiiteemeevaeken........................vepefvreevaeGrivipanknhkek.pvaiGkglrtkvnaniGtsadas 72 
                   tq+++a++giit+eme++a +en                        ++pefvr+eva+Gr++ipan+nh+e+ p++iG+++ +k+naniG+sa  s
    EGE27932.1 146 TQMHYAKQGIITPEMEYIAIRENqrqregidmrqhqgqnfgannliqITPEFVRSEVAAGRAIIPANINHPECePMIIGRNFLVKINANIGNSALGS 242
                   8*********************************************************************8888*********************** PP

  ThiC_Rad_SAM  73 dieeEveKlkvalkagadtvmdLstggdideirekileespvpvgtvpiYqaleekekkveelteeellevieeqaedGvdfltiHagvtlellell 169
                   +ieeEv+K+++a+++gadt+mdLstg++i+e+re+i+++spvp+gtvpiYqale++ + +e+lt+e + +++ eqae+Gvd++tiHagv l++++l+
    EGE27932.1 243 SIEEEVAKMTWATRWGADTIMDLSTGKNIHETREWIIRNSPVPIGTVPIYQALEKVGGVAEDLTWEIFKDTLIEQAEQGVDYFTIHAGVLLRYVPLT 339
                   ************************************************************************************************* PP

  ThiC_Rad_SAM 170 kkekRltgivSrgGsllaawmlanekenplyeefdelleilkeydvtlSlgdglRpGsiaDatdeaqlaelivlgelvkrareagvqvmveGPGHvp 266
                   +  +RltgivSrgGs++a+w+la+++en+ly++fde++ei+k+ydv++SlgdglRpG+i+Da+deaq+ el++lgel++ra++++vqvm+eGPGHvp
    EGE27932.1 340 A--NRLTGIVSRGGSIMAQWCLAHHQENFLYTHFDEICEIMKAYDVSFSLGDGLRPGCIQDANDEAQFGELHTLGELTQRAWAHDVQVMIEGPGHVP 434
                   *..********************************************************************************************** PP

  ThiC_Rad_SAM 267 ldeieanvklqkklckeaPfyvlGplvtDiapgYDhitsaiGaalaaaaGadllCyvtpaEHlglPdeedvkeGviaakiaahaadlakglkkarer 363
                   ++ i++n++lq ++ckeaPfy+lGpl+tDiapgYDhitsaiGaa+++++G+++lCyvtp+EHlglP+++dvk+G+i++kiaahaadlakg+++a+ r
    EGE27932.1 435 MHMIKQNMDLQLDVCKEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWYGTAMLCYVTPKEHLGLPNKKDVKDGIITYKIAAHAADLAKGHPGAQVR 531
                   ************************************************************************************************* PP

  ThiC_Rad_SAM 364 dkalskaRkeldwekqfelaldpekareireeklpe....eeeaCsmCgek.Cavkive 417
                   d+alskaR+e++we+qf+l+ldp++ar++++e++p+    ++++CsmCg+k C++ki++
    EGE27932.1 532 DNALSKARFEFRWEDQFNLSLDPDTARSMHDETMPKeahkSAHFCSMCGPKfCSMKITQ 590
                   **********************************987887899*******99****987 PP

>> ThiC-associated  ThiC-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   1.1e-36     1e-32       2      81 .]      27     106 ..      26     106 .. 0.97
   2 ?    1.7   0.0     0.026   2.3e+02      58      76 ..     597     615 ..     593     618 .. 0.83

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 1.1e-36
                      -TT-EEEEEE-SSTT-EEEEEEE---GG.........G----EEEE---GGGG-TTS---TTT-S--TTHHHHHHTS-EE CS
  ThiC-associated   2 fpnsrkvyvegsrpdirVpmreiklsptvlketkekeeenepvrvYDtSGpYtdpeveidvrkGLprlReaWieergdve 81 
                      +p+s+kvy++gsrpdi Vp+rei+l++t +  ++ + e+nep+ vYDtSG+Ytdp+v+id++kGLp++R++Wi er+d e
       EGE27932.1  27 LPASKKVYIQGSRPDIAVPFREISLTDTPTGLAQGGLEKNEPILVYDTSGVYTDPNVQIDLNKGLPHVRQNWILERDDSE 106
                      79**************************988889889*****************************************86 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.026
                      S---TTT-S--TTHHHHHH CS
  ThiC-associated  58 veidvrkGLprlReaWiee 76 
                        +dv++GL+++ e++ ee
       EGE27932.1 597 KGLDVERGLQQMKEKYKEE 615
                      568***********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 4028.51
//
Query:       EGE27933.1  [L=613]
Description: multidrug efflux pump ABC transporter ATPase subunit [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-38  132.7   0.1    2.1e-38  131.9   0.1    1.4  1  ABC_tran      ABC transporter
    8.9e-13   48.5  15.9    1.3e-12   48.0  15.9    1.2  1  ABC_membrane  ABC transporter transmembrane region
    1.4e-07   31.2   0.2    1.4e-06   27.9   0.3    1.9  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00037   20.5   0.0     0.0012   18.9   0.0    1.9  2  MMR_HSR1      50S ribosome-binding GTPase
    0.00052   19.9   0.0      0.001   19.0   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
    0.00061   20.2   0.1      0.001   19.5   0.1    1.5  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.015   14.3   0.0      0.026   13.5   0.0    1.3  1  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
      0.016   15.0   0.2      0.047   13.4   0.2    1.8  1  AAA_29        P-loop containing region of AAA domain
      0.017   14.8   0.0      0.038   13.7   0.0    1.6  1  AAA_24        AAA domain
      0.025   14.8   0.1       0.11   12.8   0.1    2.0  1  AAA_22        AAA domain
       0.05   12.9   0.0       0.12   11.6   0.0    1.6  1  Zeta_toxin    Zeta toxin
       0.12   11.6   0.0       0.19   11.0   0.0    1.2  1  Septin        Septin
       0.21   11.4   0.4        1.8    8.3   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
       0.25   11.2   1.2         11    5.9   0.1    2.5  2  APS_kinase    Adenylylsulphate kinase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.1   1.6e-41   2.1e-38       1     137 []     381     535 ..     381     535 .. 0.91

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 1.6e-41
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................... 79 
                 l++ sl++k+gekv++vG++GaGKStL++ll++ ++ + G+i +d++d+k+++ eslr++ig+++q+++l  ++ vren                    
  EGE27933.1 381 LDDFSLSIKAGEKVGLVGRSGAGKSTLVNLLLRFYDIDGGQIYIDQQDIKTITQESLRQNIGMVTQDTSLLHRT-VRENiaygrpdatddeiiaaakaa 478
                 7899******************************************************************9999.**********98888887774433 PP

                 HHHTC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdee...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +       i+++ +k+g+++  dt v++++ +LSgGq+qr+a+ar++lk++++lllDE+t+
  EGE27933.1 479 H---AwdfIQTLKDKFGNTG-LDTQVGERGVKLSGGQRQRIAIARVMLKNAPILLLDEATS 535
                 3...0344777778888777.88888999******************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0  15.9     1e-15   1.3e-12       1     263 [.      41     305 ..      41     315 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 1e-15
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHCSTHHHHHHS CS
  ABC_membrane   1 liliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyll..nvtgerlskrlrrklfkkilrqpmsffdtn 95 
                   l+l ++l+++ag+    +  ++g+i+d+l++++ +e++++++  ll++l+  a + l+ll ++++   v+ + + +rlr+ + + +l q+m+f+++ 
    EGE27933.1  41 LLLFTVLTAIAGIYWAYVYAWIGQIVDWLSVYSPSEFWTQKKSDLLIMLAISAFIPLVLLFETTIhhQVLQGVVPMRLRWIFHQQMLGQSMQFYQDE 137
                   57899***************************9999966666666666666666666666666663344555667999**9**************** PP

                   CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane  96 svGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192
                    +G+++++++  +  +rd++ + +g+f+  l+ +vg+ +v+  + + lt+  ++ ++ ++ + +++ ++l++ ++ + +a+a ++  ++++  +i t
    EGE27933.1 138 FSGRVSAKVMQTALAVRDVVMTLIGVFVFILTFLVGAGAVLTGIHPLLTVPFVFWILAVAALLVFVLPRLQRTSRIQADARALMTGRITDAYANINT 234
                   ************************************************************************************************* PP

                   HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHH CS
  ABC_membrane 193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvf 263
                   Vk+f + +++    ++a + ++       ++ +ll +   +++ l ++    ++++l +sg +  g + v 
    EGE27933.1 235 VKLFSHSHRESGYAKEAMKHFLGTVHDQMRLVSLLEILVSVIAVLTVSGSVAMSVYLWMSGVVGAGAVAVS 305
                   ******99999888888888888888888888899999999999999888888999999988888876555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.3   1.1e-09   1.4e-06     112     211 ..     423     577 ..     384     582 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.1e-09
                 EETTEEE-HHHHHHHHHCTT-STT...........................................................CS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...........................................................xxxxxxxxxxxxxxxx RF
       SMC_N 112 kingkevtkkevsellesagiske...........................................................lLSgGektLvalaLlf 151
                 +i++++++    ++l ++ g+  +                                                            LSgG+++ +a+a + 
  EGE27933.1 423 YIDQQDIKTITQESLRQNIGMVTQdtsllhrtvreniaygrpdatddeiiaaakaahawdfiqtlkdkfgntgldtqvgergvKLSGGQRQRIAIARV- 520
                 444444444333333333333333556666666666666666666777777777777777777777777777777778888889*******9999877. PP

                 HHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 152 AiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                    + k ap+ llDe  +aLD +  +++ + l+       +i i++r  +++ +dklv +
  EGE27933.1 521 ---MLKNAPILLLDEATSALDSEVEHAITQSLDDMMAGKTVIAIAHRLSTIASMDKLVVM 577
                 ...89***************************************************9865 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.9   7.6e+03      46      58 ..     316     328 ..     308     367 .. 0.65
   2 !   18.9   0.0   9.5e-07    0.0012       1      22 [.     393     421 ..     393     467 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.9
                 EEEEEEECGGCSS CS
    MMR_HSR1  46 keielvDtpGlie 58 
                 ++++l+ t+Gl+e
  EGE27933.1 316 THWVLWETAGLFE 328
                 6788899999876 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 9.5e-07
                 EEEEEESTTSSHHHHHHHHHT.......S CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg.......e 22 
                 +v++vGr+ +GKStL+n l++       +
  EGE27933.1 393 KVGLVGRSGAGKSTLVNLLLRfydidggQ 421
                 69*****************9755444432 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   7.8e-07     0.001      96     130 ..     387     422 ..     345     457 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.8e-07
                  HCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                   +k  + + lvG SG+GKStL+n ll   ++  g++
   EGE27933.1 387 SIKAgEKVGLVGRSGAGKSTLVNLLLRFYDIDGGQI 422
                  444446778****************98655554444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   7.9e-07     0.001       3     125 ..     371     489 ..     370     563 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 7.9e-07
      AAA_16   3 vGReeeleqLlsale.rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrek 100
                 +G++++ + Ll+ ++ ++++g  e v l+G sG GKs+lv+ llr +  dg   ++ + ++           +++++e+l + ++  +++++l +   +
  EGE27933.1 371 YGKKDQSQPLLDDFSlSIKAG--EKVGLVGRSGAGKSTLVNLLLRFYDIDG-GQIYIDQQDI----------KTITQESLRQNIGMVTQDTSLLHRTVR 456
                 688888888888888666666..56889****************9999884.4444444444..........778888888888888777777766666 PP

      AAA_16 101 leeala........avpelagaeasrllellkr 125
                    a++        +++++++a+a ++ ++lk+
  EGE27933.1 457 ENIAYGrpdatddeIIAAAKAAHAWDFIQTLKD 489
                 666666777766665556666666666666655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-05     0.026      11      54 ..     373     416 ..     365     431 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
                 -SHHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB  11 erpeakellerllakaGraqvvGltGvPGaGkstlvealglelr 54 
                 ++ +++ ll+  + +    ++vGl G  GaGkstlv+ l   + 
  EGE27933.1 373 KKDQSQPLLDDFSLSIKAGEKVGLVGRSGAGKSTLVNLLLRFYD 416
                 55689999999998888889****************98876655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   3.7e-05     0.047      17      39 ..     386     408 ..     380     412 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-05
      AAA_29  17 ieidlkgatlltGpsGsGKSTll 39 
                 ++i+  + + l+G+sG+GKSTl+
  EGE27933.1 386 LSIKAGEKVGLVGRSGAGKSTLV 408
                 56665558889***********8 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     3e-05     0.038       3      57 ..     392     445 ..     390     489 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie..swedfldevv 57 
                  k+ ++G sg+GK+tl++ l     f d+++G   +d  ++++i+  s+ + +  v+
  EGE27933.1 392 EKVGLVGRSGAGKSTLVNLL---LRFYDIDGGQIYIDQQDIKTITqeSLRQNIGMVT 445
                 5899****************...99****************9998774444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   8.2e-05      0.11      10      46 ..     396     425 ..     394     568 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.2e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvt 46 
                 ++G sG+GK+tl++ ll+ +d++  +       ++++
  EGE27933.1 396 LVGRSGAGKSTLVNLLLRFYDIDGGQ-------IYID 425
                 79******************985444.......3333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.8e-05      0.12      21      58 ..     396     433 ..     390     465 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.8e-05
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrldpDdlRelh 58 
                 l+G +GAGKs+l +ll +  + +g+ + +d+ d+++  
  EGE27933.1 396 LVGRSGAGKSTLVNLLLRFYDIDGGQIYIDQQDIKTIT 433
                 789*******************************9976 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.19       9      44 ..     396     431 ..     392     466 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
                 EEEBTTSSCCCCCCTTSSSS---------------- CS
      Septin   9 vvGesglGkttlintlfetdlieeekleeasekkkk 44 
                 +vG+sg Gk+tl+n l++  +i+  ++   ++++k+
  EGE27933.1 396 LVGRSGAGKSTLVNLLLRFYDIDGGQIYIDQQDIKT 431
                 79***************9999998554444333322 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0014       1.8       3      26 ..     395     426 ..     394     471 .. 0.75
   2 ?    0.9   0.0      0.25   3.3e+02     237     294 ..     507     560 ..     467     569 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0014
      AAA_21   3 vliGpNgsGKSnLLdaldllarl........d 26 
                 +l+G+ g+GKS+L  +l  + ++        +
  EGE27933.1 395 GLVGRSGAGKSTLVNLLLRFYDIdggqiyidQ 426
                 69***************777665443333332 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.25
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvil 294
                 lS G+++ +a++  +l  +   ++ll+DE  + L+ ++ + + + l++  + g  vi+
  EGE27933.1 507 LSGGQRQRIAIARVMLKNA---PILLLDEATSALDSEVEHAITQSLDDMMA-GKTVIA 560
                 4777777755555555555...*******9999999999999888877666.566665 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.044        56       2      27 ..     288     313 ..     287     320 .. 0.86
   2 ?    5.9   0.1    0.0086        11       5      41 ..     394     429 ..     390     459 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.044
                 -EEEEEESSTTSSHHHHHHHHHHHHH CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLv 27 
                 +v +w++G+ g+G  +++ al+ +L+
  EGE27933.1 288 SVYLWMSGVVGAGAVAVSGALAIRLQ 313
                 6789**************99998776 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0086
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase   5 vwltGlsgsGKstianalekkLvekgisvylLdGdnv 41 
                 v l G sg+GKst+ n l +    +g ++y+ d + +
  EGE27933.1 394 VGLVGRSGAGKSTLVNLLLRFYDIDGGQIYI-DQQDI 429
                 5588************999988888877765.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.47
# Mc/sec: 3899.00
//
Query:       EGE27934.1  [L=466]
Description: argininosuccinate lyase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-78  264.4   0.0    1.8e-78  264.1   0.0    1.1  1  Lyase_1   Lyase
    9.9e-25   87.1   0.0      2e-24   86.1   0.0    1.5  1  ASL_C2    Argininosuccinate lyase C-terminal


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.1   0.0     2e-82   1.8e-78       1     312 []      11     305 ..      11     305 .. 0.99

  Alignments for each domain:
  == domain 1  score: 264.1 bits;  conditional E-value: 2e-82
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSS CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekv 99 
                 grf+ ++d ++++ft++  +++r+  +di++++a +  + + +++++ e  +ii++l ++++e++ + +f+  v  e+ + +++ +l+ +ig       
  EGE27934.1  11 GRFSEATDSFVAEFTASVNFDKRMARQDIQGSIAHATMLGMCGIITQDESCQIINGLTQIQAEIDDG-KFQWLVVLEDVHMNIESRLTTLIG------- 101
                 89*****************************************************************.99999999****************....... PP

                 GIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEET CS
     Lyase_1 100 epndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvell 198
                 ++ +k+htg+S+nDqv+T++rl+l+++ ++ +l  l +L++++ + a ++ +++++G+Thlq A+Pv +g+ ++a+ e+l rd+er+ ++++r+++ +l
  EGE27934.1 102 DVGKKLHTGRSRNDQVATDIRLWLRDETDN-ILVLLAKLQSGILDLAANHTKTIMPGFTHLQTAQPVSFGHHVMAWFEMLVRDSERFVDTRHRINQMPL 199
                 ****************************66.******************************************************************** PP

                 TTTTTTSSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBT CS
     Lyase_1 199 gggtavgtglnadpefaelvakelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNP 297
                 g+++++gt + +d+      a+ l+ ++g   +++ns++avsdrD+ +e+ + +++l+++Ls+++e+l+l +s  +g++ + ++  + GSSiMP+K+NP
  EGE27934.1 200 GSAALAGTTYPIDRT---ITARLLG-FEG---ICQNSLDAVSDRDFAIEFTANASILMMHLSRMSEELILWMSAQFGFIHIPDRFCT-GSSIMPQKKNP 290
                 ***************...8888888.***...*******************************************************.*********** PP

                 HHHHHHHHHHHHHHH CS
     Lyase_1 298 vqlElltgvagrvvG 312
                 +  El++g+a+rv+G
  EGE27934.1 291 DVPELVRGKAARVFG 305
                 **************9 PP

>> ASL_C2  Argininosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   2.2e-28     2e-24       1      68 [.     368     435 ..     368     436 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 2.2e-28
                 STTHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTT--GGG--HHHHHHH-TT--GGGGGGSSHHHHT CS
      ASL_C2   1 FstATdlADyLvrkGlpFReAHeivgravrlaeekgkeleeltleelkeisplleedveeaLdpeasV 68 
                 ++tATdlADyLv+kGlpFR+AHe+vg+av l  +kg++l+el+l+el+++spl+e dv+++L++e+s+
  EGE27934.1 368 YATATDLADYLVKKGLPFRDAHEVVGKAVGLGVSKGVDLSELSLDELQSFSPLIECDVFDCLTLEGSL 435
                 79***************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3191.44
//
Query:       EGE27935.1  [L=321]
Description: porphobilinogen deaminase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-81  272.1   0.0    3.2e-81  271.7   0.0    1.1  1  Porphobil_deam   Porphobilinogen deaminase, dipyromethane cof
    1.2e-19   70.4   0.4    2.1e-19   69.6   0.4    1.4  1  Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain


Domain annotation for each model (and alignments):
>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.7   0.0   3.6e-85   3.2e-81       1     202 [.       6     212 ..       6     214 .. 0.96

  Alignments for each domain:
  == domain 1  score: 271.7 bits;  conditional E-value: 3.6e-85
  Porphobil_deam   1 irigtRkSkLAlaqaelvaeaLke...eeeveivtiktkGDkildkpLakiggkglFtkeleeaLlegeidlaVhSlKDlptelpeglelaavlk 92 
                     ++i+tR+S+LAl+qa+ ++++L++   + +ve+ ++ tkGDkild+pLakiggkglF+kele+aL+++++d+aVhSlKD+p+ lpegl+l+a+++
      EGE27935.1   6 LTIATRQSPLALWQANFIKAKLEQlypSLSVELLEMVTKGDKILDTPLAKIGGKGLFVKELEQALYDKRADIAVHSLKDVPMVLPEGLMLGAYCE 100
                     68********************776656669**************************************************************** PP

  Porphobil_deam  93 redprDvlvvks..sleelpegavvgTsSlRRkaqlkklrpdlevkdlRGnvdtRlrkldegeydaiiLAaAGLkRlgleerisevlspeellpa 185
                     r+ p+D++v ++  +l++lp+ga++gTsSlRR++ql+++rpdl++k+lRGnv tRl kld+geydaiiLA++GL+Rlgl++ri++ l+ e +lpa
      EGE27935.1 101 RHAPTDAFVSNHfeHLDDLPTGAILGTSSLRRECQLRQARPDLDIKSLRGNVGTRLGKLDAGEYDAIILATSGLERLGLHKRIRHELDDELSLPA 195
                     *********744779********************************************************************666********* PP

  Porphobil_deam 186 vgQGalavevrkedeel 202
                     vgQGala+e+r++de++
      EGE27935.1 196 VGQGALAIECRSDDEAI 212
                     **************987 PP

>> Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.4   2.4e-23   2.1e-19       2      74 ..     226     303 ..     225     304 .. 0.88

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 2.4e-23
                      HHHHHHHHHHHHTT--TTSSEEEEEEEETTE.EEEEEEEE-TTS..S-EEEEEEEE.......-GGGHHHHHHHHHHHHH CS
  Porphobil_deamC   2 levlaERallkeLeGGCsvPiGvyaeveaneelkLkglvlsldglksaveeaeakg.......eleeaeelGkklaeell 74 
                      l+vlaERa+++ LeGGC+vPi+++a++e+++ l+L+g v+s dg+   ++  ++ +       +++ ae+lG+++a ell
       EGE27935.1 226 LCVLAERAMNRALEGGCQVPIAGFAVIEDGM-LTLRGRVGSVDGKT-LLKAQQSHKlmgeiqlDEQAAEQLGIDVAHELL 303
                      79*****************************.************76.4444444447888999999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2354.27
//
Query:       EGE27936.1  [L=252]
Description: uroporphyrinogen-III synthase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-26   91.6   0.0    5.7e-26   91.3   0.0    1.0  1  HEM4      Uroporphyrinogen-III synthase HemD


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   3.2e-30   5.7e-26      10     208 ..      22     221 ..      16     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 3.2e-30
                 TTEEEEE---EECCE...CCHHHHHHHHHT.....--SEEEE--HHHHHHHHHHHH...HTT---HHHHHCSEEESSHHHHHHHHHTT---SEE-..SS CS
        HEM4  10 rGaeplelPlieiep...aedraelraalddleagkydwliftSanavealfealk...reeedvkalaslkvaavGpaTaraLeelglrvdlvpseeg 102
                 +G  ++ lPl++i++   +e +a++ +a     + +yd+l++tS++  +  +e+l+      +++ +l +++++avG aTa++L+++gl v+ +p  ++
  EGE27936.1  22 TGMPVIDLPLLDIQTlpmTETKASMMRAWL---DYDYDVLVVTSVESARRALEYLDklhGGHHWQSKLPNAPIVAVGLATAKVLTDRGLPVV-LPRVTN 116
                 5778999********777555555555554...457********************999999999**************************7.787566 PP

                 SHHHH..GGGS-.---EEEEEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHHHHHHHHHHHT..T--SEEEESSHHHHHHHHHH-S-HHHHHCT CS
        HEM4 103 taegL..aeelaeslagkrvlllrgeiarddlaegLeergaevdevevYetvpaeeepeelkealka..gevdavvftSpstvrnllellkdegdelke 197
                 + eg+  + e+++ ++g+rvl+ rg  +r+ l e+L++rg+++d +  Ye+  + ++ ++++++lk   +++d+ v+ S++++ + +++l+     +++
  EGE27936.1 117 N-EGMlaMTEIRSLISGSRVLIWRGAGGRKLLHETLKARGVQIDVIRWYERFIPMDLMDNFQKNLKIinEKADVFVIISSEMAYQAWRRLP----HHRQ 210
                 6.555355599999999**********************************99999********99876888*******************....6888 PP

                 SEEEEESHHHH CS
        HEM4 198 vkvaaiGptTa 208
                  ++ a G++ +
  EGE27936.1 211 YHYLALGERLK 221
                 99988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1846.67
//
Query:       EGE27937.1  [L=290]
Description: SpoU family rRNA methylase [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-35  122.5   0.0    2.1e-35  122.0   0.0    1.3  1  SpoU_methylase  SpoU rRNA Methylase family
    3.6e-10   40.0   0.0      7e-10   39.0   0.0    1.5  1  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   2.3e-39   2.1e-35       2     142 .]     131     275 ..     130     275 .. 0.95

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 2.3e-39
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST..T-SEGCCSHHH CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl..kgkslseidlk 94 
                     l++vl++i+d++NlGa++Rta a+g+++++l +++sa +++p+++++++ga ev+++  v++l+++l+++k++g+ +++t l  ++k+  e d+ 
      EGE27937.1 131 LFLVLDQITDAHNLGACLRTACAMGVDAVILPRHQSA-PITPTVAKVSVGASEVIPVISVTNLARTLEKMKKSGVFIFGTALdkSAKPAFECDFG 224
                     579****************************997776.***************************************9998876888888***** PP

                     TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTS...SS--HHHHHHHHHH CS
  SpoU_methylase  95 ekvalvfGnEdkGlsnelleladrlvkIpmsgev...eSLNvavAvailly 142
                     +kva+++G+E++G+++ + + +d lv+Ipm++     +SLNv+vA++++ly
      EGE27937.1 225 GKVAIIMGSEGDGMRRLTQTMCDTLVYIPMAEVLdrpQSLNVSVATGMVLY 275
                     ******************************98765568***********98 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   7.8e-14     7e-10       2      72 ..      38     112 ..      37     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 7.8e-14
  SpoU_sub_bind   2 iyGlhaVleaLksgrr.iekllvtegradkr...leellklakkrgikvelvdkekLdklsgtanHQGvvaevkp 72 
                     yG+haV  ++k +++ +  l+++  + ++     + +++ ak  gi+++ + +e+L +l+g+++HQGvva ++ 
     EGE27937.1  38 FYGIHAVSMLIKRRPEeVLGLFIQLRDDGQMsseHQLIVQSAKHFGISIQNAHRERLTELCGSQQHQGVVALART 112
                    59************989******99944443443699**********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2281.90
//
Query:       EGE27938.1  [L=85]
Description: hypothetical protein EA1_00105 [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-16   59.4   1.3    2.7e-16   59.0   1.3    1.2  1  NqrM      (Na+)-NQR maturation NqrM


Domain annotation for each model (and alignments):
>> NqrM  (Na+)-NQR maturation NqrM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   1.3   1.5e-20   2.7e-16       1      42 [.      30      75 ..      30      76 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 1.5e-20
        NqrM  1 vivkrKpikGSCGGLaalgidkeCd.C...depCderkkklakeqe 42
                ++vk+Kp+kGSCGG+a+l+ d++C+ C   +++C+++ +k++++++
  EGE27938.1 30 YFVKKKPLKGSCGGVATLMGDEHCQfCgndPNKCESNIDKIDDTAR 75
                89***************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 669.82
//
Query:       EGE27939.1  [L=635]
Description: molecular chaperone DnaK [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     3e-262  871.2  18.6   3.4e-262  871.0  18.6    1.0  1  HSP70            Hsp70 protein
    3.5e-13   49.1   2.9    6.4e-11   41.6   0.7    2.7  2  MreB_Mbl         MreB/Mbl protein
     0.0016   18.2   0.0     0.0038   17.0   0.0    1.7  1  FGGY_C           FGGY family of carbohydrate kinases, C-termi
  ------ inclusion threshold ------
      0.019   14.5   0.0      0.037   13.6   0.0    1.4  1  DUF3153          Protein of unknown function (DUF3153)
      0.021   14.9   0.9      0.047   13.8   0.9    1.5  1  Cob_adeno_trans  Cobalamin adenosyltransferase
      0.037   13.7   1.5        2.8    7.6   0.0    2.5  2  DUF4423          Domain of unknown function (DUF4423)
        0.3   11.2   5.3       0.87    9.7   5.3    1.7  1  DUF1090          Protein of unknown function (DUF1090)
       0.32   11.0   5.5        0.2   11.7   2.3    2.3  2  Phasin           Poly(hydroxyalcanoate) granule associated pr
        2.6    8.5   8.6        1.7    9.1   4.8    2.8  2  Ribosomal_L12    Ribosomal protein L7/L12 C-terminal domain
          6    7.4  12.9        2.6    8.5   0.4    4.1  3  FtsA             Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  871.0  18.6  1.9e-265  3.4e-262       1     598 [.       4     602 ..       4     603 .. 0.99

  Alignments for each domain:
  == domain 1  score: 871.0 bits;  conditional E-value: 1.9e-265
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 viGiDLGttns+vav+eg+k++vi+n+eg+rttPs+vaF++ e lvG+aAkrqavtnpknt+f++KrliGr+f+d+evqk+i+ +p+k+vk++ng+a+v
  EGE27939.1   4 VIGIDLGTTNSCVAVLEGDKVKVIENAEGARTTPSIVAFKDGETLVGQAAKRQAVTNPKNTLFAIKRLIGRRFEDKEVQKDISLVPFKIVKADNGDAWV 102
                 79************************************************************************************************* PP

                 EEEETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSXE CS
       HSP70 100 eveaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggtf 198
                 ev+  ++k +p qisa vL+k+k+tae+ylg+ vt+av+tvPaYfndaqRqatkdAgkiAGL+v Ri+NepTAaalaYG+dkk  +++v+vyDlGggtf
  EGE27939.1 103 EVN--DKKQAPPQISAEVLRKMKKTAEDYLGEAVTEAVVTVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALAYGMDKKGGDKTVAVYDLGGGTF 199
                 ***..999******************************************************************************************* PP

                 EEEEEEEE..TT..EEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTT.EEEEEE CS
       HSP70 199 dvSilele..kG..vfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedg.kdlsek 292
                 dvSi+e+   +G  +fev+aT+gDthlGGedfD al+++lveefkk+++++l+ d+ a+qrlkeaaekaK+eLSss++te+nl+++t+d++g k+l ++
  EGE27939.1 200 DVSIIEIAdvDGdqQFEVLATNGDTHLGGEDFDLALIDYLVEEFKKEQDVNLKGDPLAMQRLKEAAEKAKIELSSSQSTEVNLPYITADSSGpKHLVVT 298
                 *******85545669************************************************************************************ PP

                 EEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBES CS
       HSP70 293 lsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtp 391
                 +sRak+e+l+ed+++rt+ p++ al+da+l++++id+v+lvGG+tR+P vq++v+e+fgkep+k+vnpDeava+GAA+q++vlsg  + kd+lllDvtp
  EGE27939.1 299 ISRAKLESLTEDMVARTIIPCKTALEDAGLSASDIDDVILVGGQTRMPLVQQKVQEFFGKEPRKDVNPDEAVAMGAAIQGAVLSG--DKKDVLLLDVTP 395
                 *************************************************************************************..************ PP

                 S-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCC CS
       HSP70 392 LslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgk 490
                 L+lgiet+ggvmt +ie+nt iptkksqvfstaadnq+av+i+v+qger+++++nkllg+f+l++ippaprGvpqieVtfdi+a+Gi+++sakdk+tgk
  EGE27939.1 396 LTLGIETMGGVMTPIIEKNTMIPTKKSQVFSTAADNQPAVSIQVYQGERKIANQNKLLGNFDLTDIPPAPRGVPQIEVTFDINADGIMNISAKDKGTGK 494
                 *************************************************************************************************** PP

                 EEEEEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHH CS
       HSP70 491 eeeitieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeeekeeieakteelkkv 589
                 +++i+i+a++glse+eie+m++ ae++a+ed+k ++ ++a+nea+  ++ ++k+l+e+++kv+ +e+++vesai+ L+++++e+++++i+ak+e+l+++
  EGE27939.1 495 SQSIQIKADSGLSESEIEEMIRTAEANAAEDEKFANLANARNEADGRIHAVQKALKEAGDKVTTEETTAVESAISTLEAAAKEDDADDIKAKLEALDNA 593
                 *************************************************************************************************** PP

                 HHHHHHHHH CS
       HSP70 590 vekiaekly 598
                   +i +k+y
  EGE27939.1 594 FLPISQKIY 602
                 *****9998 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0017       3.1       2      48 ..       3      55 ..       2      81 .. 0.67
   2 !   41.6   0.7   3.6e-14   6.4e-11      75     317 ..     116     376 ..     110     384 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0017
                SEEEEEE-SSEEEEEE..TTTEEEEEE.......ES-EEEETTT--EEEESHHHHT CS
    MreB_Mbl  2 kdlgiDLGtantlvyv..kgkgivlne.......psvvAikkktkkvlavGeeAkk 48
                k +giDLGt+n  v v   +k  v+++       ps+vA+k  ++    vG+ Ak+
  EGE27939.1  3 KVIGIDLGTTNSCVAVleGDKVKVIENaegarttPSIVAFKDGET---LVGQAAKR 55
                569********9985521455556643233333388888887654...35666665 PP

  == domain 2  score: 41.6 bits;  conditional E-value: 3.6e-14
                 HHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EE.EEEE-SS-EEEEEEETTEE..... CS
    MreB_Mbl  75 eellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnm.vvdiGggttevavislggi..... 167
                 +e+l+++ k +++    + ++ v++vP   ++ +r+A k+a k aG +   +i+ep aAA+  g++ +    ++ v d+Gggt +v++i ++++     
  EGE27939.1 116 AEVLRKMKKTAEDYLGEAVTEAVVTVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTAAALAYGMDKKGGDKTVaVYDLGGGTFDVSIIEIADVdgdqq 214
                 5667777666666666678899********************************************99876554288*************999833333 PP

                 ....EEEEEES-SHHHHHHHHHHHHHHHHS....EE-.-........HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEE..EEEEEHHHHHHHHH CS
    MreB_Mbl 168 ....vtsksvrvaGdeldeaiikyirkkyn....lli.G........ertaekikieigsavkeeeeekmeikGrdlvtglpk..evevsseevrealk 247
                      t    +++G+++d a+i+y+ ++++    + + G        ++ aek kie++s  ++e +        d  +  pk   v++s +++++  +
  EGE27939.1 215 fevlATNGDTHLGGEDFDLALIDYLVEEFKkeqdVNLkGdplamqrlKEAAEKAKIELSSSQSTEVNLP--YITAD--SSGPKhlVVTISRAKLESLTE 309
                 3311334456789***********988775222233323111111223455666666655554444432..22233..334441157889999999999 PP

                 HHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHH CS
    MreB_Mbl 248 epvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtgk 317
                 ++v++ +   k++Le++   L+a  +d  ++l+GG + +  +++ ++e +g + +   +p ++va G+++
  EGE27939.1 310 DMVARTIIPCKTALEDAG--LSASDIDD-VILVGGQTRMPLVQQKVQEFFGKEPRKDVNPDEAVAMGAAI 376
                 ***************865..65544444.7788******************99999999*****999875 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.1e-06    0.0038     139     196 ..     304     380 ..     235     382 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.1e-06
      FGGY_C 139 lealekd..................sgkpldrlavdGGgskndllmqllAdilg.vpVerpktaeatalGaAilAav 196
                 le+l++d                  s +++d ++++GG+++ +l++q   + +g  p + + ++ea+a+GaAi +av
  EGE27939.1 304 LESLTEDmvartiipcktaledaglSASDIDDVILVGGQTRMPLVQQKVQEFFGkEPRKDVNPDEAVAMGAAIQGAV 380
                 34444444444444444466777888999*************************888888999***********997 PP

>> DUF3153  Protein of unknown function (DUF3153)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.037      76     134 ..     427     488 ..     377     506 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
     DUF3153  76 aaglslpepelrlvernlllgveqqlsldlDLrelsgtpr....ldLelaLetpggarninse 134
                 +a+ ++p+ ++++ + ++ ++ +++l  ++DL++++ +pr    ++ ++ +++  g+ ni+++
  EGE27939.1 427 TAADNQPAVSIQVYQGERKIANQNKLLGNFDLTDIPPAPRgvpqIEVTFDINAD-GIMNISAK 488
                 455567889*********************************998888888776.44454444 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.9   2.6e-05     0.047      36     118 ..     528     603 ..     504     607 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
                      HHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS--EESEEES-SSHHHH CS
  Cob_adeno_trans  36 nsaiglarallaeeeeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeideleaelpplksfilpggspaaa 118
                       +        la++++e++ +++ +q+ L ++g ++ t+e++  +++i+  e ++ e+  d+++a+l+ l++ +lp +++  a
       EGE27939.1 528 FAN-------LANARNEADGRIHAVQKALKEAGDKVTTEETTAVESAISTLEAAAKEDDADDIKAKLEALDNAFLPISQKIYA 603
                      222.......33336788999***************99977777777886668999999*****************9988776 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0016       2.8      37     100 ..      63     125 ..      55     137 .. 0.90
   2 ?    4.7   0.3     0.012        22     108     150 ..     557     599 ..     499     604 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0016
     DUF4423  37 adpeelakrlrpkisaeevekalefLlklgllkkdedgkyrqtekslttssevkseavrsyhkq 100
                  +  ++++ ++ ++  +ev+k ++ L+  +++k d+ + ++  + + + + ++++e++r++ k 
  EGE27939.1  63 NTLFAIKRLIGRRFEDKEVQKDIS-LVPFKIVKADNGDAWVEVNDKKQAPPQISAEVLRKMKKT 125
                 566789999**************7.8***********************************985 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.012
     DUF4423 108 alervpkeeRdissltlaiskedyekikkeirefrkkilaiae 150
                  +e++++ e  is+l  a +++d ++ik +++++ + +l i++
  EGE27939.1 557 TTEETTAVESAISTLEAAAKEDDADDIKAKLEALDNAFLPISQ 599
                 3578899999***********************9999988776 PP

>> DUF1090  Protein of unknown function (DUF1090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.3   0.00048      0.87      23     104 ..     509     593 ..     506     596 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00048
     DUF1090  23 qaIekqieaAkahg.nqkrvagLekaLkevkanCtd.eklkaerqekv.eekeeeVaereaeLaeakekgdkdkiakrqekLaea 104
                 ++Ie+ i++A+a+  ++++ a L +a +e++      +k ++e+ +kv  e+   V+     L++a +++d+d+i+++ e L++a
  EGE27939.1 509 SEIEEMIRTAEANAaEDEKFANLANARNEADGRIHAvQKALKEAGDKVtTEETTAVESAISTLEAAAKEDDADDIKAKLEALDNA 593
                 79********9875267899*********9875433255556666666489999*************************999876 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.9   3.5e+03      46      84 ..     121     159 ..     116     169 .. 0.73
   2 ?   11.7   2.3   0.00011       0.2      54     119 ..     526     592 ..     507     598 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.9
      Phasin  46 klekktkkvaeekleevresvkskveevkekaeeqwdkl 84 
                 k++k++++   e+++e+  +v + +++++ +a++   k+
  EGE27939.1 121 KMKKTAEDYLGEAVTEAVVTVPAYFNDAQRQATKDAGKI 159
                 566667777777777777788888888888888877776 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
      Phasin  54 vaeekleevresvkskveevkekaeeqwdklekafdervakaLsrlgvpsre.dveaLsarvdeLtk 119
                 +  ++l ++r++++ +++ v++ ++e+ dk+ +   + v++a+s+l+ + +e d ++++a++++L +
  EGE27939.1 526 EKFANLANARNEADGRIHAVQKALKEAGDKVTTEETTAVESAISTLEAAAKEdDADDIKAKLEALDN 592
                 33456788999************************************976652799********987 PP

>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1         3   5.5e+03      47      58 ..     262     273 ..     254     278 .. 0.73
   2 ?    9.1   4.8   0.00093       1.7      15      60 ..     545     590 ..     536     593 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3
                    HHHHHHHHHHHH CS
  Ribosomal_L12  47 keeAeeikkkLe 58 
                    ke Ae++k +L 
     EGE27939.1 262 KEAAEKAKIELS 273
                    777887777665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00093
                    HHHHHHHHH---HHHHHHHHTTTTSTEEEEE-HHHHHHHHHHHHCT CS
  Ribosomal_L12  15 VIKaVreitglgLkeaKdlVeaapkvvkegvskeeAeeikkkLeea 60 
                    V Ka++e+ +    e    Ve+a ++++ ++++++A++ik+kLe+ 
     EGE27939.1 545 VQKALKEAGDKVTTEETTAVESAISTLEAAAKEDDADDIKAKLEAL 590
                    5577777776677788899************************985 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.4    0.0015       2.6       1      28 [.       5      29 ..       5     176 .. 0.62
   2 ?    3.5   0.9     0.054        96       2      37 ..     191     257 ..     190     375 .. 0.52
   3 ?    0.8   0.5      0.36   6.4e+02      25      61 ..     497     542 ..     477     616 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
                EEEEE-SSSEEEEEEETTEEEEEEEES- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvigv 28
                +++D+G++ ++vav+e+++++   vi  
  EGE27939.1  5 IGIDLGTTNSCVAVLEGDKVK---VIEN 29
                58***************8554...4433 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.054
                 EEEE-SSSEEEEEEETTEEEE...EEEES--HHHHHHH............................H CS
                 xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx............................x RF
        FtsA   2 lvDiGagktdvavaedgalvh...lrvigvggngitkd............................i 37 
                 + D+G+g+ dv+++e   +     ++v+ ++g+    +                            +
  EGE27939.1 191 VYDLGGGTFDVSIIEIADVDGdqqFEVLATNGDTHLGGedfdlalidylveefkkeqdvnlkgdplA 257
                 5699999999999998766657777777774432222223333344444444444444444444433 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.36
                 EES--HHHHHHH.......HHHHHT--HHHHHHHHHHH--S--........E CS
                 xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxx........x RF
        FtsA  25 vigvggngitkd.......iakalrtaveeAerikikyGsala........e 61 
                 +i++     + d       i++++rta ++A + ++ ++++ +         
  EGE27939.1 497 SIQI-----KADsglseseIEEMIRTAEANAAEDEK-FANLANarneadgrI 542
                 4444.....444444444799999999887755542.222222233333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1133  (0.0631937); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4299.48
//
Query:       EGE27940.1  [L=173]
Description: GrpE family heat shock protein [Moraxella catarrhalis O35E]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-45  154.8   7.0    1.8e-45  154.6   7.0    1.0  1  GrpE             GrpE
     0.0033   17.8   4.9     0.0033   17.8   4.9    1.9  2  LPP              Lipoprotein leucine-zipper
  ------ inclusion threshold ------
       0.03   13.1   1.1      0.036   12.9   1.1    1.1  1  DUF3573          Protein of unknown function (DUF3573)
      0.057   13.3   3.1      0.066   13.1   3.1    1.2  1  GvpL_GvpF        Gas vesicle synthesis protein GvpL/GvpF
      0.062   13.4   4.8       0.09   12.9   4.8    1.3  1  RP-C_C           Replication protein C C-terminal region
       0.13   12.6  15.7      0.052   13.9  11.2    2.1  2  Alanine_zipper   Alanine-zipper, major outer membrane lipopro
       0.17   10.9   1.6       0.24   10.4   1.6    1.2  1  RE_HaeIII        HaeIII restriction endonuclease
       0.17   12.3   5.8       0.29   11.5   5.8    1.3  1  Syntaxin_2       Syntaxin-like protein
       0.19    8.8   0.2       0.21    8.7   0.2    1.0  1  Spike_torovirin  Torovirinae spike glycoprotein
       0.22    9.4   2.6       0.24    9.3   2.6    1.0  1  Prominin         Prominin
       0.24   10.0   3.0        0.3    9.7   3.0    1.1  1  DUF3138          Protein of unknown function (DUF3138)
       0.26   12.0   5.9       0.42   11.4   5.9    1.4  1  DUF2203          Uncharacterized conserved protein (DUF2203)
       0.26   11.5   5.3       0.39   10.9   5.3    1.3  1  Fib_alpha        Fibrinogen alpha/beta chain family
        0.3    9.7   7.6       0.35    9.5   7.6    1.0  1  Peptidase_S46    Peptidase S46
       0.32    9.7   4.7       0.39    9.5   4.7    1.1  1  Trehalase        Trehalase
       0.42   10.8   4.3       0.64   10.2   2.1    2.0  2  COG5             Golgi transport complex subunit 5
       0.48   10.7   3.2        1.1    9.5   0.0    2.7  3  Pec_lyase_N      Pectate lyase, N terminus
       0.51    9.9   8.7       0.59    9.7   8.7    1.1  1  DUF885           Bacterial protein of unknown function (DUF88
       0.55   10.3   3.7        2.2    8.3   3.6    2.0  1  DUF1515          Protein of unknown function (DUF1515)
       0.57   10.5   5.5        1.2    9.4   5.5    1.6  1  COMMD1_N         COMMD1 N-terminal domain
       0.61    9.4  11.2       0.79    9.0  11.2    1.2  1  DUF4407          Domain of unknown function (DUF4407)
       0.69    9.1   8.2       0.78    8.9   8.2    1.1  1  VSG_B            Trypanosomal VSG domain
       0.75    7.6   4.3       0.73    7.7   4.3    1.0  1  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.94    9.0  15.3        1.1    8.7  15.3    1.1  1  Filament         Intermediate filament protein
        1.1   10.0   7.2        1.9    9.2   6.8    1.7  2  YabA             Initiation control protein YabA
        1.2    9.3   5.7       0.77   10.0   1.8    2.2  2  XhlA             Haemolysin XhlA
        1.6    7.7   8.1        1.7    7.6   8.1    1.0  1  BAF1_ABF1        BAF1 / ABF1 chromatin reorganising factor
        1.6    7.5   7.0          2    7.2   7.0    1.0  1  Apt1             Golgi-body localisation protein domain
        1.6    8.6  12.8        2.9    7.8   7.7    2.1  2  MIP-T3_C         Microtubule-binding protein MIP-T3 C-termina
        1.8    8.3   5.6        2.9    7.6   5.6    1.3  1  EIIBC-GUT_N      Sorbitol phosphotransferase enzyme II N-term
        1.8    8.7  11.1        6.5    6.9   3.1    2.2  2  GCN5L1           GCN5-like protein 1 (GCN5L1)
          2    7.7   4.6        3.4    6.9   4.6    1.3  1  NHase_alpha      Nitrile hydratase, alpha chain
        2.6    5.5  13.9        2.8    5.3  13.9    1.0  1  DUF3584          Protein of unknown function (DUF3584)
        2.7    8.3  11.8          4    7.8  11.8    1.2  1  Muted            Organelle biogenesis, Muted-like protein
          3    6.3   5.4        3.4    6.1   5.4    1.0  1  FUSC             Fusaric acid resistance protein family
        3.3    7.8   8.0         37    4.4   6.8    2.1  2  COG2             COG (conserved oligomeric Golgi) complex com
        3.9    5.2   8.6        4.7    4.9   8.6    1.1  1  Nup88            Nuclear pore component
        4.3    7.7  10.0         14    6.0   9.6    2.0  2  DUF1840          Domain of unknown function (DUF1840)
          7    5.4   8.1        8.3    5.1   8.1    1.1  1  ALMT             Aluminium activated malate transporter
        7.2    6.9   7.5        9.6    6.5   3.3    2.3  2  Plasmid_RAQPRD   Plasmid protein of unknown function (Plasmid
        9.4    6.6  18.7         14    6.0  18.7    1.5  1  OmpH             Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   7.0     4e-48   1.8e-45       8     165 ..      17     172 ..       6     173 .] 0.96

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 4e-48
                 TTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..HHH-HHHHHHHHHHHHHHHHHHH CS
        GrpE   8 eeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksakeneeekslleGvemtlkqllkiL 106
                 e ++++ e+l +++++le+evke+ke   r++ae  n+++r+e+e ++akkfa++kfak+LL+v+Dnlera+k a+e+ + ++ leG+++t+k ll++L
  EGE27940.1  17 ETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDAEETGADDASLEGIRLTHKVLLSVL 115
                 56789999******************************************************************99999999***************** PP

                 HHTT-EE---TTSB--TTTEEEEEEECSSC...TBEEEEEE--EEETTEEEE-EEEEEE CS
        GrpE 107 ekhgvekiepkgepFDpnlheavstveddekeegtvvevvqkGYklkdrvlRpAmVkVs 165
                 ek+gv+ + ++g+ F+p++heav   +++e  ++ + +v+qkGY l++r lRpAmV V 
  EGE27940.1 116 EKNGVVAVGNVGDTFNPEIHEAVGIFPEAE--KDIIGQVLQKGYILNERTLRPAMVMVG 172
                 ***************************999..9************************96 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   4.9   7.5e-06    0.0033      14      41 ..      21      48 ..      16      67 .. 0.64
   2 ?   -1.1   0.1       5.9   2.6e+03      21      34 ..      79      92 ..      69      99 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.5e-06
         LPP 14 skvdqlssdvnsakaaaqaakeEAaRAN 41
                ++v++l s+++++++++++ake AaRAN
  EGE27940.1 21 EQVEALHSQIQALENEVKEAKETAARAN 48
                4666666666666666666666666666 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 5.9
         LPP 21 sdvnsakaaaqaak 34
                + v++++ a+++a 
  EGE27940.1 79 EVVDNLERAIKDAE 92
                33444555555554 PP

>> DUF3573  Protein of unknown function (DUF3573)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.1   8.3e-05     0.036      31     142 ..       6     126 ..       1     134 [. 0.65

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.3e-05
     DUF3573  31 neqtsksnl...idkelilklqkqikelqaeinhlketknsnesaqfttysskvedsklprslldnkeskdlsqv.qktsvdil...tni..daessii 120
                 +eqt+  ++   +  e +  l +qi+ l+ e+++ ket    ++  + +     +++++ +  +  k +k+l +v ++++  i    +    da+   i
  EGE27940.1   6 TEQTTMEEImaeTTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKKFALQKFAKELLEVvDNLERAIKdaeETGadDASLEGI 104
                 445544433111446778889999999999999999988876666666555544555556666667788888777544444443110222113344459 PP

     DUF3573 121 nlaskplGgifnqkGgidvGga 142
                  l++k l  +++++G + vG+ 
  EGE27940.1 105 RLTHKVLLSVLEKNGVVAVGNV 126
                 9*******************96 PP

>> GvpL_GvpF  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.1   0.00015     0.066     122     196 ..      23      95 ..      10     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00015
   GvpL_GvpF 122 eealleelleedpelrelreeieaasesgtayllrkrlgqrleealeerreelaeeleeaLaplaeevrerepqd 196
                  eal +++ + ++e++e++e++++a++   +y +++r++q+ ++a +   ++ a+el e +  l ++++  e+++
  EGE27940.1  23 VEALHSQIQALENEVKEAKETAARANA--ESYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDAEETG 95 
                 245555566666666666666666655..5899999999999999999999999999999999999998888776 PP

>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   4.8   0.00021      0.09      10      75 ..       8      71 ..       2     126 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00021
      RP-C_C 10 ralverlprkatlaeleelleelealreevenalesalkaenssanesqnerhiqnsnpdsssese 75
                ++ +e++  ++t++++e+l+++++al +ev++a e+a++a+ +s n+++  ++ ++  +  ++ ++
  EGE27940.1  8 QTTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAK--KFALQ 71
                678899999*************************9999999888887654444444444..33322 PP

>> Alanine_zipper  Alanine-zipper, major outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  11.2   0.00012     0.052       5      50 ..      18      67 ..      15      79 .. 0.62
   2 ?    0.9   0.3       1.3   5.9e+02       8      25 ..      79      97 ..      69     102 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00012
  Alanine_zipper  5 elqakadqaeqdaaaaksaadeAkskAdeAaarAenA....eaaAeeAqk 50
                     ++ +++++ ++++a++++ +eAk++A+ A+a + nA    e+  ++A+k
      EGE27940.1 18 TTTEQVEALHSQIQALENEVKEAKETAARANAESYNAqrrmEQETDKAKK 67
                    56667777777777777777777777777777666663333344444444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1.3
  Alanine_zipper  8 akadqaeqdaaaaksa.ad 25
                      +d++e+++++a+++ ad
      EGE27940.1 79 EVVDNLERAIKDAEETgAD 97
                    4466666666666554233 PP

>> RE_HaeIII  HaeIII restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.6   0.00056      0.24       8      70 ..      29      92 ..      25      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00056
   RE_HaeIII  8 clkalleelkkirkveivknssleaakkawneldeelkk.ilklsaeaavetilelePrlkees 70
                 ++al++e+k+ +++    n++ + a++  ++ +++ kk  l++ a+  +e++ +le  +k+ +
  EGE27940.1 29 QIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKKfALQKFAKELLEVVDNLERAIKDAE 92
                589**************9999888888777776666555278999************9998865 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   5.8   0.00067      0.29      27      95 ..      22      93 ..       4      95 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00067
  Syntaxin_2 27 dteelrekl...helieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqrqyae 95
                + e l++++   ++ ++e++e++ + n+   + ++  +++ d+++k++ +k +k++ e++ +++++ ++++e
  EGE27940.1 22 QVEALHSQIqalENEVKEAKETAARANAESYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDAEE 93
                4667777773335556777778888888888888888888888***********************999987 PP

>> Spike_torovirin  Torovirinae spike glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2   0.00048      0.21    1150    1225 ..      13      86 ..       2     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00048
  Spike_torovirin 1150 tilagyttknfeeiqsslntlgqqvqdfsqtsalslqqlsngfeqitqqldksiyyvmavqqyatymsslvnqlne 1225
                        i+a  tt+++e ++s +++l ++v++  +t+a +  +  n   ++ q+ dk+  +  a+q++a  +  +v++l+ 
       EGE27940.1   13 EIMAETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKKF--ALQKFAKELLEVVDNLER 86  
                       48999***********************************************9765..889999999999988865 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.6   0.00055      0.24     612     685 ..       9      93 ..       2     138 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00055
    Prominin 612 lyleqlckkltkvnletlaekleelanelsngk..........knlkqslkneaqdlraiq.qelvlplessvkklkksvkklde 685
                 + +e++  + t+ ++e+l++++++l ne++++k           n+++++++e  + +++  q+++++l + v++l++ +k+ +e
  EGE27940.1   9 TTMEEIMAETTTEQVEALHSQIQALENEVKEAKetaaranaesYNAQRRMEQETDKAKKFAlQKFAKELLEVVDNLERAIKDAEE 93 
                 3444455555555555555555555555555554444333433444444444444444443233333344444444444444443 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.0   0.00068       0.3      19     115 ..      15     107 ..       5     114 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00068
     DUF3138  19 aaaatadrikalkaqltalqrqvkelraalaaakaaaGgkissqkaaaaaaaaaeaaaaltedd.vaqlkeqianaelkv.dalqeaattGpiaGlsvt 115
                 +a++t+++++al++q++al+++vke +++      aa +++ s +a     + ++ a  ++ ++  ++l e + n e  + da ++ a +  + G+ +t
  EGE27940.1  15 MAETTTEQVEALHSQIQALENEVKEAKET------AARANAESYNAQRRMEQETDKAKKFALQKfAKELLEVVDNLERAIkDAEETGADDASLEGIRLT 107
                 56677788888888888888877776654......3344444555555555555555555433314567777777766553555566666667666665 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.9   0.00095      0.42       8      81 ..      16      93 ..       6     105 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00095
     DUF2203  8 AnalLpllkelleelralrkeleeleeeleeakaeaekse....aaeleaeleeleaeieelveeieelGvevkdlea 81
                A+++  +++ l ++++al++e++e++e  ++a+ae+ + +    +++++a+  +l++ ++el+e +++l   +kd+e+
  EGE27940.1 16 AETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQrrmeQETDKAKKFALQKFAKELLEVVDNLERAIKDAEE 93
                666777788888888888888888887666666665555456666666666667777788888888888888888875 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.3    0.0009      0.39      24     101 ..      17      92 ..       8      97 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0009
                 HCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH CS
   Fib_alpha  24 dlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqe 101
                 ++ +++ + ++ +++ lene++e++++   a+  + + +  ++++  ++k  + +++k++kel e + +l++ i++ e
  EGE27940.1  17 ETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAK--KFALQKFAKELLEVVDNLERAIKDAE 92 
                 44455666667777777777777777777777666666666665555555..78999999999988888998887766 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.6    0.0008      0.35     278     385 ..       5     113 ..       1     123 [. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0008
                    HHHHHHHHHHHHH-HHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHTTH.HHHHHHHHHHHHHHHHHCT-H.HHHTTHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_S46 278 eeriallkeemkkdpeiriky.asklagleNylKnliGmlealkkkkv.lekkqaeeaalrawlkkdpekkekygkalselealvkekrklaersa 371
                    ++++ +++e m+++++ +++   s+++ leN +K+++ + +  +++    +++ ++e++ +++ + ++  ++++ +++++le+++k+ +++ +++a
     EGE27940.1   5 TTEQTTMEEIMAETTTEQVEAlHSQIQALENEVKEAKETAARANAESYnAQRRMEQETDKAKKFALQK-FAKELLEVVDNLERAIKDAEETGADDA 99 
                    567788888888877666655499**********9987666555555405555555555555555444.468999****************99999 PP

                    HHHHHTTTTSHHHH CS
  Peptidase_S46 372 lleeaessgsells 385
                     le ++ +++ lls
     EGE27940.1 100 SLEGIRLTHKVLLS 113
                    99988877765555 PP

>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.7    0.0009      0.39      26     111 ..      16     100 ..       1     108 [. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0009
                 HCHHCCHHEE..TTTTHHHHHHHHCE-SGGGS.EE.E-TT-HHHHHHHHHHHCTGGHH.EECCHHCCTTCCCCHTTTS-SCE-TTEC CS
   Trehalase  26 kaslekaltrridkedlkkfvedtfeetgseleri.vpkdekeqpeyflkkaedeelrleaeelnklwkalvrkikkkvgllpeass 111
                  +++ +  + +  +++++++ ++ +e+++++ ++  + +++++++e+ ++ka++  l+++a+el + +++l r ik+++++ +++ s
  EGE27940.1  16 AETTTE--QVEALHSQIQALENEVKEAKETAARANaESYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDAEETGADDAS 100
                 222222..12233455666666666655555544458999999999888999*************************9998877665 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.1    0.0015      0.64      61     111 ..       2      53 ..       1      67 [. 0.87
   2 ?    0.4   0.0       1.6   7.1e+02       7      30 ..      67      90 ..      64     107 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0015
                 XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHH CS
        COG5  61 lehlskskslss.vlselksslesLsasyerlkskvlepyeeaeklqsalkr 111
                 +e+++++++ ++ + ++ ++++e+L + ++ l+++v e  e a   +++  +
  EGE27940.1   2 TEQTTEQTTMEEiMAETTTEQVEALHSQIQALENEVKEAKETAARANAESYN 53 
                 689999999999999999********************99999888776554 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.6
                XXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  7 dFdpksfanallkatnnnddteld 30
                 F  ++fa++ll  + n + +  d
  EGE27940.1 67 KFALQKFAKELLEVVDNLERAIKD 90
                688888999998855544444443 PP

>> Pec_lyase_N  Pectate lyase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.7       2.7   1.2e+03      13      25 ..      41      53 ..      29      57 .. 0.49
   2 ?    9.5   0.0    0.0026       1.1      13      45 ..      62      94 ..      58     119 .. 0.87
   3 ?   -1.2   0.0       5.6   2.4e+03      30      42 ..     125     137 ..     124     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 2.7
  Pec_lyase_N 13 aeeAkkaaleaYe 25
                 +e A +a+ e+Y+
   EGE27940.1 41 KETAARANAESYN 53
                 2333333344554 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0026
  Pec_lyase_N 13 aeeAkkaaleaYepnPleVtdhFneevnealeg 45
                  ++Akk+al+ + ++ leV+d++ ++ ++a e+
   EGE27940.1 62 TDKAKKFALQKFAKELLEVVDNLERAIKDAEET 94
                 689***********************9997665 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 5.6
  Pec_lyase_N  30 eVtdhFneevnea 42 
                  +V d Fn e +ea
   EGE27940.1 125 NVGDTFNPEIHEA 137
                  78899**999986 PP

>> DUF885  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.7    0.0013      0.59     221     301 ..       3      85 ..       1     108 [. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0013
                 HHHSSSS-HHHHH.HHHHHHHHHHHHHHHHHHHHHHH.-.HHHHHHHHHCH-GGGEEESHHHHHHHHHHHHHHHHHHHCCHHH CS
      DUF885 221 sftttdltpeeih.elglaelariraemeaiakevgf.kgdlaevlaalrtdprfyleetdagreellaaaraaiaeldaklp 301
                 ++tt ++t+eei+ e+  ++++ ++++++a+ +ev++ k++ a++ a+  +++r++ +etd+ ++  l+++ +++ e+ ++l+
  EGE27940.1   3 EQTTEQTTMEEIMaETTTEQVEALHSQIQALENEVKEaKETAARANAESYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLE 85 
                 57899999***98357889****************554655566666666888888888888885444444433333333233 PP

>> DUF1515  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.6    0.0051       2.2       5      56 ..      25      88 ..      14     124 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0051
     DUF1515  5 gvlqqlgtllaevkelredlk...........rsedrsdas.rakmyrkmdelvervtalegsv 56
                +++ q++ l +evke +e              r e+ +d + +  +++   el+e v  le ++
  EGE27940.1 25 ALHSQIQALENEVKEAKETAAranaesynaqrRMEQETDKAkKFALQKFAKELLEVVDNLERAI 88
                6899999999999999998874666666666655655553303444444566666666666665 PP

>> COMMD1_N  COMMD1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.5    0.0028       1.2      23      95 ..       3      75 ..       1      82 [. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0028
    COMMD1_N 23 eeiteellkeelypdvsedefaalvekmksLlksiasadmdlaQLeafLtaqtkkqggalsaeqaaalakFWk 95
                e+ te+   ee++++ ++++++al++++++L +++ +a    a  +a   + +++ +    + ++ al+kF k
  EGE27940.1  3 EQTTEQTTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKKFALQKFAK 75
                678999*****************************99999999888765555577776688888899999976 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  11.2    0.0018      0.79     115     213 ..       3     102 ..       1     118 [. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0018
     DUF4407 115 eqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalrae.aqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarl 212
                 eq  e+++ +e +a++ t+++++l +qi+al++e+++a++++++++ae ++++   ++ t   ++    + ake  +  d +++++++++++   +a l
  EGE27940.1   3 EQTTEQTTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARANAEsYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDAEETGADDASL 101
                 566677777777888899999999999999999999888777766654266666666666666778888899999999999999999999886655555 PP

     DUF4407 213 a 213
                 +
  EGE27940.1 102 E 102
                 4 PP

>> VSG_B  Trypanosomal VSG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.2    0.0018      0.78      76     155 ..      13      98 ..       1     120 [. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0018
       VSG_B  76 a....katktkkaakkncgalkafWkeakkaakakkkk..eltrpantrararanekiqqiaekaaeiyseikkekekakkaraek 155
                 +     +t++ +a +++ +al+++ keak++a++++ +   ++r  +++ +++++  +q++a++  e++++++++ ++a++  a++
  EGE27940.1  13 EimaeTTTEQVEALHSQIQALENEVKEAKETAARANAEsyNAQRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDAEETGADD 98 
                 1333356777888899999999************99998878888888889999999*********************99765554 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.3    0.0017      0.73      60     131 ..      12      84 ..       1     139 [. 0.54

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0017
  V_ATPase_I  60 eesleapeekeldeleeelekleeelkelnenleklk.kelnelvelkavlekakefleee.eeeeeeeeseee 131
                 ee ++++++++++ l+++++ le+e+ke +e++ + + +++n    +++   kak+f  ++ ++e  e  + + 
  EGE27940.1  12 EEIMAETTTEQVEALHSQIQALENEVKEAKETAARANaESYNAQRRMEQETDKAKKFALQKfAKELLEVVD-NL 84 
                 44555555555555555555555555555555444431334444444455555555544442222222111.11 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  15.3    0.0026       1.1     198     284 ..       3      90 ..       1      94 [. 0.90

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0026
                 XXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHH CS
    Filament 198 eelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqe.klseleeelaeireemarqlre 284
                 e+ +e+ ++++ +++++ e+++ l+ qiq+le e+++ k+++a  +a+  +++ r+e+e +k+++ +l++  +el e+ ++++r +++
  EGE27940.1   3 EQTTEQTTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKKfALQKFAKELLEVVDNLERAIKD 90 
                 778889999999999**********************************************999846888999999999999998876 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.8    0.0043       1.9      12      66 ..      18      70 ..       6      91 .. 0.72
   2 ?   -0.6   0.0       4.8   2.1e+03       4      20 ..      75      91 ..      70     118 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0043
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXX CS
        YabA 12 eleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkel 66
                + +eq+e+l++++++l++e++e  e  a+ ++e  + ++r+e+e++k+k+   +l
  EGE27940.1 18 TTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKK--FAL 70
                45799****************************99999999443333322..222 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 4.8
                HHHHHHHHHHHHHHHHH CS
        YabA  4 kelfdkleeleeqleel 20
                kel++ +++le+ +++ 
  EGE27940.1 75 KELLEVVDNLERAIKDA 91
                45666666666666554 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.8    0.0018      0.77       4      42 ..      21      59 ..      18      66 .. 0.92
   2 ?    0.4   0.1       1.8   7.7e+02      13      26 ..      81      94 ..      75     109 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0018
        XhlA  4 erlerietkldnleervdkleekaaeaeekiknleedlk 42
                e +e +++++  le++v++ +e aa+a +++ n++ +++
  EGE27940.1 21 EQVEALHSQIQALENEVKEAKETAARANAESYNAQRRME 59
                7899999****************************9987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.8
        XhlA 13 ldnleervdkleek 26
                +dnle  +++ ee 
  EGE27940.1 81 VDNLERAIKDAEET 94
                56666666666665 PP

>> BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   8.1     0.004       1.7     402     490 ..       6      92 ..       1     111 [. 0.65

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.004
   BAF1_ABF1 402 ddkeelseeskdkeeetnsereerqkeleseakeaqaaAqaainessslkrtlaeeddneneerkrsrnnkksdlvklnaknslvedes 490
                 +++    e + ++++e+ ++ +++ + le+e kea+++A+ a  es + +r++++e d+ ++     ++  k+ l  +++ + +++d +
  EGE27940.1   6 TEQTTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKKF--ALQKFAKELLEVVDNLERAIKDAE 92 
                 33444445556667777889999******************************6655555543..222222333344444444444444 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   7.0    0.0045         2      76     156 ..       6      94 ..       2     118 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0045
        Apt1  76 erserlekimlasdfsdleglpemvkklqerirqleeikehfqieskyl........dkegwedrlklekelaeceeeLfllmkaitts 156
                 + +  +e+im +   +++e+l++++++l +++++ +e+    + es +         dk ++  ++k  kel e+ ++L  ++k + ++
  EGE27940.1   6 TEQTTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAqrrmeqetDKAKKFALQKFAKELLEVVDNLERAIKDAEET 94 
                 5667899****************************776666555555333333444355555666666666666666666665555443 PP

>> MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.7    0.0067       2.9      94     147 ..       5      58 ..       1      60 [. 0.75
   2 ?    4.4   0.9     0.079        34      93     131 ..      55      93 ..      49      97 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0067
    MIP-T3_C  94 yrqqaeelaeerrateealeplkaqlaeleeaIkdqkekisnvrakilkNeaki 147
                  ++q +  + + ++t e++e l+ q++ le+++k+ ke    + a+  + + ++
  EGE27940.1   5 TTEQTTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRM 58 
                 4444455555778899*********************99887777666666655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.079
    MIP-T3_C  93 eyrqqaeelaeerrateealeplkaqlaeleeaIkdqke 131
                 + r ++e ++ ++ a ++  ++l + + +le aIkd +e
  EGE27940.1  55 QRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDAEE 93 
                 3344444444444555677889999999********876 PP

>> EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.6    0.0066       2.9     109     182 ..      17      91 ..       6      93 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0066
  EIIBC-GUT_N 109 gvkeeqieladeeeeeeee.eeeekeeaeekekkketkkkiteqeekekkkgliakigigvGkvvavfyqagrda 182
                  + ++eq+e+++++ ++ e+  +e+ke+a++++++ +++++ +eqe+++ kk  ++k+++ + +vv  +  a +da
   EGE27940.1  17 ETTTEQVEALHSQIQALENeVKEAKETAARANAESYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDA 91 
                  566778887765554444303444445555555555666666666667788899***********9999999886 PP

>> GCN5L1  GCN5-like protein 1 (GCN5L1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.1     0.015       6.5      25      67 ..       6      48 ..       2      51 .. 0.86
   2 ?    6.8   1.7     0.016         7      43      86 ..      49      90 ..      45      94 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.015
      GCN5L1 25 esaaaltealvdklnsgvaeayanqkklekeakalqanvakfa 67
                ++ + + e + ++  ++v++++++ ++le+e+k+ ++++a+ +
  EGE27940.1  6 TEQTTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARAN 48
                5667889999999**********************99999876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.016
      GCN5L1 43 aeayanqkklekeakalqanvakfakqtdqWlalvesfnsalke 86
                ae+y+ q+++e+e+ + ++   +++k +++ l++v+++++a+k+
  EGE27940.1 49 AESYNAQRRMEQETDKAKK--FALQKFAKELLEVVDNLERAIKD 90
                5789999999999876544..45667777788888888888886 PP

>> NHase_alpha  Nitrile hydratase, alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.6    0.0078       3.4       5      86 ..       6      85 ..       2      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0078
  NHase_alpha  5 arvkaleelliekglitakeldelvevleaevgpangarvvarAWtdpefkarlledataaieelglegaegeelvvventp 86
                 + ++++ee++ e  + + ++l++++++le+ev++  +++  arA  ++   +r +e+ t  ++++ l++  +e l vv+n +
   EGE27940.1  6 TEQTTMEEIMAETTTEQVEALHSQIQALENEVKE--AKETAARANAESYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLE 85
                 556789*************************655..567789******99999**************999999*****9976 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  13.9    0.0065       2.8     617     712 ..       3     100 ..       1     118 [. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0065
     DUF3584 617 saeakqkqaeeelkq.lnaeleeakravaeaatalknardtlerlqnekesekdklekaiaerkqqaeeq.lqkldaqlkqleeqqkaaleelkedls 712
                 +++ +q+ +ee +++   +++e+++ +++  ++++k+a++t  r++ e  ++++++e+ + ++k+ a ++  ++l +  + le+ +k+a+e  ++d+s
  EGE27940.1   3 EQTTEQTTMEEIMAEtTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKKFALQKfAKELLEVVDNLERAIKDAEETGADDAS 100
                 56777888888776515678999999999999999999999999999999999999999999999876551577999999999999999998888876 PP

>> Muted  Organelle biogenesis, Muted-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  11.8    0.0092         4      46     133 ..       9      93 ..       2      99 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0092
       Muted  46 klvnelkeqllpkclesmkenLselnkkleaalekverllqkeleeekrkseqlqekeeerkaeweeflkelqekkeevDeefeekve 133
                  +++e+++++  + +e+++++++ l++++++a+e++ r + ++ ++++   +  qe+ +++k   ++f kel e  +++++ +++++e
  EGE27940.1   9 TTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQR---RMEQETDKAKKFALQKFAKELLEVVDNLERAIKDAEE 93 
                 456778888888888889999999999999999999999888555554...3334566888889999999999999999999988877 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.4    0.0077       3.4     206     294 ..       8      96 ..       1     117 [. 0.47

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0077
        FUSC 206 qaayesprirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrrale 294
                 q+++e      +++++ +l+s+++al   + +  +  ar +ae+ +a++ +++  +++++++ +++a++l + ++ l+++++++++  +
  EGE27940.1   8 QTTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDAEETGA 96 
                 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444433 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.8     0.085        37      83     117 ..      21      56 ..       5      87 .. 0.42
   2 ?    4.3   0.6     0.091        40      77     121 ..      69     113 ..      54     121 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.085
        COG2  83 kkvesvreklsereeeveskleeakeleekr.ellk 117
                 ++ve++++++++ e+ev++  e a+++++++ +  +
  EGE27940.1  21 EQVEALHSQIQALENEVKEAKETAARANAESyNAQR 56 
                 444444444444444444433333333333321111 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.091
        COG2  77 plaaarkkvesvreklsereeeveskleeakeleekrellklllk 121
                  l+++ k++ +v+++l++++++ e+  ++ ++le  r   k+ll+
  EGE27940.1  69 ALQKFAKELLEVVDNLERAIKDAEETGADDASLEGIRLTHKVLLS 113
                 456666666666666666666666666666666666655555554 PP

>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.6     0.011       4.7     624     702 ..      14      91 ..       1      95 [. 0.72

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
       Nup88 624 seaeremkkelekikeklkslknalkqvkkkldkqrkqiakskeeekksslelsekqkktikeiLkeegeeieelikqv 702
                 + ae    +++e+++++++ l+n++k++k++    + +  +++ ++++++ + ++   ++  + L e  +++e+ ik+ 
  EGE27940.1  14 IMAET-TTEQVEALHSQIQALENEVKEAKETAARANAESYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDA 91 
                 44444.4899*********************999988888888777776666666666666666666666666666654 PP

>> DUF1840  Domain of unknown function (DUF1840)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   9.6     0.033        14      38      97 ..      22      82 ..       4      94 .. 0.73
   2 ?    2.4   0.1      0.43   1.9e+02      39      63 ..      74      98 ..      72     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.033
     DUF1840 38 taedlpaaiakLeaaiaaekaeeaeeeeeeeeeek.eeekeeeeeevsLaqRalPLlelLk 97
                ++e l + i++Le++++++k+ +a++++e+ ++++  e++++++++ +L++ a  Lle  +
  EGE27940.1 22 QVEALHSQIQALENEVKEAKETAARANAESYNAQRrMEQETDKAKKFALQKFAKELLEVVD 82
                56888999*********99999888876665554446778888889999888888887643 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.43
     DUF1840 39 aedlpaaiakLeaaiaaekaeeaee 63
                a++l +++++Le+ai+++++  a++
  EGE27940.1 74 AKELLEVVDNLERAIKDAEETGADD 98
                57888999*******9998876654 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   8.1     0.019       8.3     382     467 ..       7      93 ..       1      95 [. 0.58

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.019
        ALMT 382 kkeeaeaveeaeseseksllkeskrslklskkesapaeeslee.kqlskeeelkelelaealslatfaslLielvarldkiveavee 467
                 ++++ e++++++++++ ++l+++ ++l+++ ke+ ++  + +  +  ++   ++e++ a+   l+ fa  L e+v+ l++ + ++ee
  EGE27940.1   7 EQTTMEEIMAETTTEQVEALHSQIQALENEVKEAKETAARANAeSYNAQRRMEQETDKAKKFALQKFAKELLEVVDNLERAIKDAEE 93 
                 223334444444444444444444455555444444444333314444555567788899999999999999999999999998887 PP

>> Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.3     0.022       9.6       6      36 ..      20      50 ..      15      65 .. 0.83
   2 ?    2.2   0.1      0.47   2.1e+02       8      33 ..      69      94 ..      62     108 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.022
  Plasmid_RAQPRD  6 reeLakllkqLdqlqalveraeaqakqeeka 36
                     e++++l++q+++l++ v++a+++a++++++
      EGE27940.1 20 TEQVEALHSQIQALENEVKEAKETAARANAE 50
                    57899********************998443 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.47
  Plasmid_RAQPRD  8 eLakllkqLdqlqalveraeaqakqe 33
                    +L k +k+L ++   +era + a++ 
      EGE27940.1 69 ALQKFAKELLEVVDNLERAIKDAEET 94
                    56666666655555555555544433 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  18.7     0.032        14      21     105 ..       8      91 ..       1     155 [. 0.75

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.032
                 HHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  21 qeqlekkf.kklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinkaikev 105
                 q+ +e+   ++  +++ea+  ++q+l++e +++++++  ++ ++ ++++++  q+  ++k+  lqk  +ell+ ++d+++ aik+ 
  EGE27940.1   8 QTTMEEIMaETTTEQVEALHSQIQALENEVKEAKETA-ARANAESYNAQRRMEQETDKAKKFALQKFAKELLE-VVDNLERAIKDA 91 
                 4444443337888999999999999999998666553.44444446666666666455555778888888888.888888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2947  (0.164371); expected 358.6 (0.02)
Passed bias filter:                     1229  (0.0685482); expected 358.6 (0.02)
Passed Vit filter:                       217  (0.0121033); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              41  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 1126.53
//
[ok]
